Citrus Sinensis ID: 043667

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------
Protein Sequence
MLEPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGVQLPPSLKRLDIWNCDNIRTLTVEEGVQSSSR
Secondary Structure (PSIPRED)
cccccccccEEEEEccccccccccccccccccEEEEEEEccccccccccccccccccEEEcccccccEEEcccccccccccccccccEEEEcccccccccccccccccccccccccEEEEccccccccccccccccccEEEEEccccccccccccccccEEEEcccccccccccccccccccEEEEcccccccccccccccccccccEEEEcccccccccccccccccccccccEEEEEcccccccccccHHHHHHHHHHHccccccEEEEEcccccccccccccccccccEEEEEccccccccccccccccccEEEEccccccccccccccccccccccEEEEEccccccccccccccccccEEEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEcccccccccccccccccccEEEEEcccccccccccccccccccEEEEccccccEEccHHHcccccccccHHHcEEEEcccHHHHHcccccccccccccccccEEEEccccHHccccccccccccEEEEccccccccccccccccEEEEEEccccccccccccccccccEEEEcccccccccccccccccccccEEEEEccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccEEEEcccHcHHcccccccccccccEEEEcccccccccccccccccccEEEEcccHHHccccccccccccccccEEEEcccccccccccccccccccEEEEcccHHHHHccHHcccccccc
Coil and Loop (DISEMBL)
mlephknleQFCIsgyrgakfptwfgdssfsnlVTLKfeycgmcptlpsvgqlpslkhlaVCGMTSvkrlgsefygkgaaipfprletlRFDAmlgwedwiplrsgqgvegfpklRELHILRCSKlqgtfpehlPALEMLVIEACKELSVSVSslpalcklkiggckkVVWRSatdhlgsqnsvvcrdtsnqvflagplkpqlpKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGlvklpqsslslsslreidiydcsslvsfpevalpsklkkIEIRKCDalkslpeawmcdtnssletlkieRCRSLTyiagvqlppslkrldiwncdnirtltveegvqsssr
Flexible Loop (DISEMBL)
MLEPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWRSATdhlgsqnsvvcrDTSNQVFlagplkpqlpKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLvklpqsslslssLREIDIYDCSslvsfpevalpsklkkiEIRKCDALkslpeawmcdtnssletlkIERCRSLTYIagvqlppslkrldiwnCDNIRTLtveegvqsssr
Low Complexity Region (SEG)
MLEPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGplkpqlpkleelilSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQsslslsslREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGVQLPPSLKRLDIWNCDNIRTLTVEEGVQSSSR
Disordered region (IsUnstruct)
********EQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAE*****QQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGVQLPPSLKRLDIWNCDNIRTLTV*********
Disordered Region (DISOPRED)
MLEPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVV*********SQNSVVCRDTSNQVFLAG**KPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGVQLPPSLKRLDIWNCDNIRTL****GVQ****
Disordered Region (DISEMBL)
MLEPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVA********QLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGVQLPPSLKRLDIWNCDNIRTLTV*********
Disordered Region (DISPRO)
*LEPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGVQLPPSLKRLDIWNCDNIRTLTVE********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLEPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGVQLPPSLKRLDIWNCDNIRTLTVEEGVQSSSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	387	2.2.26 [Sep-21-2011]
Q9LRR5	1424	Putative disease resistan	yes	no	0.932	0.253	0.285	1e-30
Q9LRR4	1054	Putative disease resistan	no	no	0.674	0.247	0.313	2e-29
Q7XBQ9	970	Disease resistance protei	N/A	no	0.410	0.163	0.306	5e-10
Q7XA39	988	Putative disease resistan	N/A	no	0.679	0.266	0.264	7e-10
Q7XA42	979	Putative disease resistan	N/A	no	0.599	0.236	0.256	8e-08
Q7XA40	992	Putative disease resistan	N/A	no	0.705	0.275	0.270	2e-07
Q9FKZ0	815	Probable disease resistan	no	no	0.317	0.150	0.335	4e-06
Q9FKZ1	809	Probable disease resistan	no	no	0.322	0.154	0.345	8e-06
P23799	630	Putative adenylate cyclas	N/A	no	0.702	0.431	0.226	0.0007
Q9FW44	787	Disease resistance protei	no	no	0.330	0.162	0.302	0.0008

>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1

 Score =  134 bits (337), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 122/428 (28%), Positives = 189/428 (44%), Gaps = 67/428 (15%)

Query: 1    MLEPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLA 60
            MLEPH +L+ FCI  Y+G  FP W GDSSF  + ++    C +C +LP VGQLPSLK+L+
Sbjct: 754  MLEPHPHLKTFCIESYQGGAFPKWLGDSSFFGITSVTLSSCNLCISLPPVGQLPSLKYLS 813

Query: 61   VCGMTSVKRLGSEFY---GKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRE 117
            +     ++++G +F+        +PF  L+ L+F  M  W++WI      G+  FP L++
Sbjct: 814  IEKFNILQKVGLDFFFGENNSRGVPFQSLQILKFYGMPRWDEWICPELEDGI--FPCLQK 871

Query: 118  LHILRCSKLQGTFPEHLPALEMLVIEACKELSV----------------SVSSLPALCKL 161
            L I RC  L+  FPE LP+   + I  C   +V                S +S+P++ + 
Sbjct: 872  LIIQRCPSLRKKFPEGLPSSTEVTISDCPLRAVSGGENSFRRSLTNIPESPASIPSMSRR 931

Query: 162  KI----GGCKKVVWRSATDHLGSQNSVVCRDTSNQV-----FLAGPLKPQLPKLEE---- 208
            ++    G  K     SA     S +     +  N+V       + P   Q    ++    
Sbjct: 932  ELSSPTGNPKSDASTSAQPGFASSSQ---SNDDNEVTSTSSLSSLPKDRQTEDFDQYETQ 988

Query: 209  ---LILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCR 265
               L    +E   I   + G + DI S    T+       SLV     D + +   L   
Sbjct: 989  LGSLPQQFEEPAVISARYSGYISDIPS----TLSPYMSRTSLVP----DPKNEGSILPGS 1040

Query: 266  LEYLRLRY-CKGLVKLPQSSLSL---------SSLREIDIYDCSSLVSFPEVALPSKLKK 315
              Y   +Y  K  V  P+SS ++         + +  + + D S L+      LP  L+ 
Sbjct: 1041 SSYQYHQYGIKSSVPSPRSSEAIKPSQYDDDETDMEYLKVTDISHLME-----LPQNLQS 1095

Query: 316  IEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGVQLPPSLKRLDIWNCDNIRT 375
            + I  CD L SLPE  + ++  +L  L I  C SL    G   P +LK L I +C   + 
Sbjct: 1096 LHIDSCDGLTSLPEN-LTESYPNLHELLIIACHSLESFPGSHPPTTLKTLYIRDC---KK 1151

Query: 376  LTVEEGVQ 383
            L   E +Q
Sbjct: 1152 LNFTESLQ 1159

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1

 Score =  130 bits (326), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/297 (31%), Positives = 141/297 (47%), Gaps = 36/297 (12%)

Query: 2    LEPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAV 61
            L PH+++E+  I  Y+G +FP W  D SFS +V ++   C  C +LPS+GQLP LK L +
Sbjct: 761  LRPHRHIEKLAIERYKGRRFPDWLSDPSFSRIVCIRLRECQYCTSLPSLGQLPCLKELHI 820

Query: 62   CGMTSVKRLGSEFY------GKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKL 115
             GM  ++ +G +FY            PF  LETLRFD +  W++W+ +R  +G + FP L
Sbjct: 821  SGMVGLQSIGRKFYFSDQQLRDQDQQPFRSLETLRFDNLPDWQEWLDVRVTRG-DLFPSL 879

Query: 116  RELHILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWRSAT 175
            ++L ILRC +L GT P  LP+L  L I  C  L       P   +      + +  +S+ 
Sbjct: 880  KKLFILRCPELTGTLPTFLPSLISLHIYKCGLLDFQ----PDHHEYSYRNLQTLSIKSSC 935

Query: 176  DHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKK 235
            D L                +  PL      L++L +      Y  +  +  L+   +L+ 
Sbjct: 936  DTL----------------VKFPLN-HFANLDKLEVDQCTSLYSLELSNEHLRGPNALRN 978

Query: 236  LTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRL------RYCKGLVKLPQSSLS 286
            L I+ C  LQ L       Q  Q+   +CR  YLR       +Y      LP+S++S
Sbjct: 979  LRINDCQNLQLLPKLNALPQNLQVTITNCR--YLRQPMEQQPQYHHPQFHLPRSNVS 1033

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 83/199 (41%), Gaps = 40/199 (20%)

Query: 2   LEPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLK---- 57
           L+PH NL    I G+RG   P W   S   N+V++       C  LP  G LP L+    
Sbjct: 701 LKPHSNLTSLKIYGFRGIHLPEWMNHSVLKNIVSILISNFRNCSCLPPFGDLPCLESLEL 760

Query: 58  HLAVCGMTSVKRLGSEFY-GKGAAIPFPRLETL---RFDAMLGWEDWIPLRSGQGVEGFP 113
           H     +  V+ +  + + G    I FP L  L    F ++ G      L   +G E FP
Sbjct: 761 HWGSADVEYVEEVDIDVHSGFPTRIRFPSLRKLDIWDFGSLKG------LLKKEGEEQFP 814

Query: 114 KLRELHILRC-------------------SKLQGTFPE----HLPALEMLVIEAC---KE 147
            L E+ I  C                   +K+  +FPE    +L  L+ L I  C   KE
Sbjct: 815 VLEEMIIHECPFLTLSSNLRALTSLRICYNKVATSFPEEMFKNLANLKYLTISRCNNLKE 874

Query: 148 LSVSVSSLPALCKLKIGGC 166
           L  S++SL AL  LKI  C
Sbjct: 875 LPTSLASLNALKSLKIQLC 893

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score = 65.5 bits (158), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 144/344 (41%), Gaps = 81/344 (23%)

Query: 2   LEPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAV 61
           L+PH NL+   I  + G +FP+W   S    +++++ + C  C  LP  G+LP L++L +
Sbjct: 700 LKPHPNLKYLEIIAFGGFRFPSWINHSVLEKVISVRIKSCKNCLCLPPFGELPCLENLEL 759

Query: 62  -CGMTSVK-----RLGSEFYGKGAAIPFPRLETLR---FDAMLGWEDWIPLRSGQGVEGF 112
             G   V+      + S F  + +   FP L+ LR   F ++ G      L   +G E F
Sbjct: 760 QNGSAEVEYVEEDDVHSRFSTRRS---FPSLKKLRIWFFRSLKG------LMKEEGEEKF 810

Query: 113 PKLRELHILRCSKLQGTFP--EHLPALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVV 170
           P L E+ IL C      FP    +  LE+      + LS S+S+L  L  L+IG      
Sbjct: 811 PMLEEMAILYCPLF--VFPTLSSVKKLEVHGNTNTRGLS-SISNLSTLTSLRIGAN---- 863

Query: 171 WRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGL---L 227
           +R+ +                   L   +   L  LE L        + +K+   L   L
Sbjct: 864 YRATS-------------------LPEEMFTSLTNLEFLSF------FDFKNLKDLPTSL 898

Query: 228 QDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSL 287
             + +LK+L I+ C  L+S          +Q  E    L  L ++YCK L  LP+    L
Sbjct: 899 TSLNALKRLQIESCDSLESF--------PEQGLEGLTSLTQLFVKYCKMLKCLPEGLQHL 950

Query: 288 SSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAW 331
           ++L  + +  C      PEV           ++CD  K + E W
Sbjct: 951 TALTNLGVSGC------PEVE----------KRCD--KEIGEDW 976

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2

 Score = 58.5 bits (140), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 121/312 (38%), Gaps = 80/312 (25%)

Query: 2   LEPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAV 61
           L+PH NL+   I+G+ G + P W   S   N+V+++   C  C  LP  G+LP L+ L  
Sbjct: 697 LKPHSNLKYLEINGFGGIRLPDWMNQSVLKNVVSIRIRGCENCSCLPPFGELPCLESL-- 754

Query: 62  CGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWI-PLRSGQGVEGFPKLRELHI 120
                      E +   A + +              ED + P R       FP LR+L I
Sbjct: 755 -----------ELHTGSADVEYV-------------EDNVHPGR-------FPSLRKLVI 783

Query: 121 LRCSKLQGTFP----EHLPALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWRSATD 176
              S L+G       +  P LE +    C    +     P L  +K     KV+   AT 
Sbjct: 784 WDFSNLKGLLKMEGEKQFPVLEEMTFYWCPMFVI-----PTLSSVK---TLKVIVTDAT- 834

Query: 177 HLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTK-EQTYIWKSHDGLLQDICSLKK 235
                   V R  SN           L  L  L +S   E T +    + + + + +LK 
Sbjct: 835 --------VLRSISN-----------LRALTSLDISDNVEATSL---PEEMFKSLANLKY 872

Query: 236 LTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSL-SLSSLREID 294
           L I +   L+ L           L  L+  L+ L+  +C  L  LP+  +  L+SL E+ 
Sbjct: 873 LKISFFRNLKELPT--------SLASLNA-LKSLKFEFCDALESLPEEGVKGLTSLTELS 923

Query: 295 IYDCSSLVSFPE 306
           + +C  L   PE
Sbjct: 924 VSNCMMLKCLPE 935

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score = 57.8 bits (138), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 129/318 (40%), Gaps = 45/318 (14%)

Query: 2   LEPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAV 61
           L+PH NL+   I  + G   P W   S   N+V++    C  C  LP  G+LP L+ L +
Sbjct: 707 LKPHPNLKYLEIIDFCGFCLPDWMNHSVLKNVVSILISGCENCSCLPPFGELPCLESLEL 766

Query: 62  C-GMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHI 120
             G   V     E+      +   R  +LR   + G+ +   L+  +G E FP L E+ I
Sbjct: 767 QDGSVEV-----EYVEDSGFLTRRRFPSLRKLHIGGFCNLKGLQRMKGAEQFPVLEEMKI 821

Query: 121 LRCSKLQGTFPEHLPALEMLVI--EACKELSVSVSSLPALCKLKIGGCKKVVWRSATDHL 178
             C      FP  L +++ L I  EA      S+S+L  L  LKI     V         
Sbjct: 822 SDCPMF--VFPT-LSSVKKLEIWGEADAGGLSSISNLSTLTSLKIFSNHTVT-------- 870

Query: 179 GSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTI 238
            S    + ++  N ++L+      L  L+EL  S              L  + +LK L I
Sbjct: 871 -SLLEEMFKNLENLIYLSVSF---LENLKELPTS--------------LASLNNLKCLDI 912

Query: 239 DWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDC 298
            +C  L+SL  EE  +    L EL        + +C  L  LP+    L++L  + I  C
Sbjct: 913 RYCYALESL-PEEGLEGLSSLTELF-------VEHCNMLKCLPEGLQHLTTLTSLKIRGC 964

Query: 299 SSLVSFPEVALPSKLKKI 316
             L+   E  +     KI
Sbjct: 965 PQLIKRCEKGIGEDWHKI 982

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q9FKZ0|DRL43_ARATH Probable disease resistance protein At5g66910 OS=Arabidopsis thaliana GN=At5g66910 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 73/140 (52%), Gaps = 17/140 (12%)

Query: 229 DICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLS 288
           ++ SLK L+I  C KL  L         + +  LS RLE LR+  C  L +LP+++  LS
Sbjct: 677 EVVSLKTLSITNCNKLSQL--------PEAIGNLS-RLEVLRMCSCMNLSELPEATERLS 727

Query: 289 SLREIDIYDCSSLVSFP-EVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERC 347
           +LR +DI  C  L   P E+    KL+ I +RKC   + LP     D+   LE L++ +C
Sbjct: 728 NLRSLDISHCLGLRKLPQEIGKLQKLENISMRKCSGCE-LP-----DSVRYLENLEV-KC 780

Query: 348 RSLTYIAGVQLPPSLKRLDI 367
             +T +   +L P ++ L +
Sbjct: 781 DEVTGLLWERLMPEMRNLRV 800

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKZ1|DRL42_ARATH Probable disease resistance protein At5g66900 OS=Arabidopsis thaliana GN=At5g66900 PE=3 SV=1

 Score = 52.0 bits (123), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 74/142 (52%), Gaps = 17/142 (11%)

Query: 227 LQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLS 286
           + +I SLK L+I  C KL  L         + +  LS RLE LRL     L +LP+++  
Sbjct: 669 ISEIVSLKTLSITNCNKLSQL--------PEAIGNLS-RLEVLRLCSSMNLSELPEATEG 719

Query: 287 LSSLREIDIYDCSSLVSFP-EVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIE 345
           LS+LR +DI  C  L   P E+     LKKI +RKC   + LPE+      ++LE L++ 
Sbjct: 720 LSNLRFLDISHCLGLRKLPQEIGKLQNLKKISMRKCSGCE-LPESV-----TNLENLEV- 772

Query: 346 RCRSLTYIAGVQLPPSLKRLDI 367
           +C   T +   +L P ++ L +
Sbjct: 773 KCDEETGLLWERLKPKMRNLRV 794

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P23799|ESAG8_TRYBB Putative adenylate cyclase regulatory protein OS=Trypanosoma brucei brucei GN=ESAG8 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 76/336 (22%), Positives = 134/336 (39%), Gaps = 64/336 (19%)

Query: 48  PSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSG- 106
            S+G L  L HL V G   V  +   F          RL+TL     L  ++ I +  G 
Sbjct: 177 SSIGLLKFLVHLEVDGSRGVTDITGLF----------RLKTLE---ALSLDNCINITKGF 223

Query: 107 QGVEGFPKLRELHILRCS----KLQGTFPEHLPALEMLVIEACKELS--VSVSSLPALCK 160
             +   P+L  L + + +     L+   P+    L+ML I +C E++   ++  + +L K
Sbjct: 224 DKICALPQLTSLSLCQTNVTDKDLRCIHPD--GKLKMLDISSCHEITDLTAIGGVRSLEK 281

Query: 161 LKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIW 220
           L + GC  V      + L   +++   D S  + L   +                     
Sbjct: 282 LSLSGCWNVT--KGLEELCKFSNLRELDISGCLVLGSAV--------------------- 318

Query: 221 KSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKL 280
                +L+++ +LK L++  C   + L   E              LE L L  C G+  L
Sbjct: 319 -----VLKNLINLKVLSVSNCKNFKDLNGLERL----------VNLEKLNLSGCHGVSSL 363

Query: 281 PQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLE 340
              + +LS+L+E+DI  C SLV F  +   + L+ + +R    +KS          S + 
Sbjct: 364 GFVA-NLSNLKELDISGCESLVCFDGLQDLNNLEVLYLRD---VKSFTNVGAIKNLSKMR 419

Query: 341 TLKIERCRSLTYIAGVQLPPSLKRLDIWNCDNIRTL 376
            L +  C  +T ++G++    L+ L +  C  I + 
Sbjct: 420 ELDLSGCERITSLSGLETLKGLEELSLEGCGEIMSF 455

May be involved in the postranscriptional regulation of genes in VSG expression sites.

Trypanosoma brucei brucei (taxid: 5702)

>sp|Q9FW44|ADR1_ARATH Disease resistance protein ADR1 OS=Arabidopsis thaliana GN=ADR1 PE=2 SV=2

 Score = 45.1 bits (105), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 14/142 (9%)

Query: 184 VVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPK 243
           + C+  ++ V  +  +    P L +L +   +     KS  G    I SL  L+I  CP+
Sbjct: 608 IFCKVKNSFVQTSFDISKIFPSLSDLTIDHCDDLLELKSIFG----ITSLNSLSITNCPR 663

Query: 244 LQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVS 303
           +  L       Q          LE LRL  C  L+ LP     L  L+ +DI  C SLVS
Sbjct: 664 ILELPKNLSNVQS---------LERLRLYACPELISLPVEVCELPCLKYVDISQCVSLVS 714

Query: 304 FPE-VALPSKLKKIEIRKCDAL 324
            PE       L+KI++R+C  L
Sbjct: 715 LPEKFGKLGSLEKIDMRECSLL 736

Disease resistance (R) protein that mediates resistance against Hyaloperonospora parasitica in a salicylic acid-dependent manner. Also mediates resistance against Erysiphe cichoracearum is both salicylic acid-dependent and partially NPR1-dependent. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	387
224057382	695	predicted protein [Populus trichocarpa]	0.927	0.516	0.407	3e-55
296085123	1278	unnamed protein product [Vitis vinifera]	0.945	0.286	0.376	5e-55
284026888	1424	CC-NBS-LRR protein [Quercus suber]	0.808	0.219	0.389	5e-55
225449649	1418	PREDICTED: putative disease resistance p	0.927	0.253	0.391	9e-55
400131587	1388	FB_MR5 [Malus x robusta]	0.961	0.268	0.388	5e-54
359495026	2204	PREDICTED: uncharacterized protein LOC10	0.932	0.163	0.366	1e-52
225450023	1396	PREDICTED: putative disease resistance p	0.886	0.245	0.354	8e-52
147860511	1406	hypothetical protein VITISV_014536 [Viti	0.932	0.256	0.364	1e-51
359495024	1390	PREDICTED: putative disease resistance p	0.932	0.259	0.364	2e-51
147766392	1471	hypothetical protein VITISV_007674 [Viti	0.886	0.233	0.351	4e-51

>gi|224057382|ref|XP_002299219.1| predicted protein [Populus trichocarpa] gi|222846477|gb|EEE84024.1| predicted protein [Populus trichocarpa]

 Score =  222 bits (565), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 151/371 (40%), Positives = 208/371 (56%), Gaps = 12/371 (3%)

Query: 1   MLEPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLA 60
           ML+PH+ L++  I+ Y   +FP+W GD SFSN+V L  E C  C ++P++G L SLK L+
Sbjct: 175 MLQPHQGLKELTINSYSSTEFPSWVGDPSFSNMVLLSLENCENCTSVPALGLLKSLKDLS 234

Query: 61  VCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHI 120
           + GM+ ++ +G E YG+  + PFP LETL F  M GW  W      + VE FP+L +L +
Sbjct: 235 ITGMSGLQSIGREIYGECCSNPFPSLETLYFKDMPGWNYWHA-NGEEQVEVFPRLHKLSL 293

Query: 121 LRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWRSATDHLGS 180
           L CS++ G    +LP+L+ LVI   K LSVS+SS P L  L + GCK+++ RS T    S
Sbjct: 294 LNCSRVLGRLLYYLPSLKELVICESKCLSVSISSFPMLRNLDVDGCKELICRSTT-QFSS 352

Query: 181 QNSVVCRDTSNQVFLAGPLKPQLPKLEEL-ILSTKEQTYIWKSHDGLLQDICSLKKLTID 239
            NSVV    SN  FL       L + + L I   +E T  W++   LLQ + SL+ L I 
Sbjct: 353 LNSVVLSCISNFSFLTLGFMQGLAEFKNLKITGCQEITDFWQNGVRLLQHLSSLRYLKIR 412

Query: 240 WCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCS 299
            C +L S  AEEE   Q+    L C LE L+L  C+ L + P     L SL E+ I  C+
Sbjct: 413 SCSRLVSFGAEEEG--QELKLGLPCSLEMLKLIDCESLQQ-PLILHGLRSLEELHIEKCA 469

Query: 300 SLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSS----LETLKIERCRSLT-YIA 354
            LVSF +  LP  LK++ I  CD L+ L E    D N S    LE L I  C SL   ++
Sbjct: 470 GLVSFVQTTLPCTLKRLCISYCDNLQYLLEEEK-DANISSTSLLEYLDIRNCPSLKCLLS 528

Query: 355 GVQLPPSLKRL 365
             +LP  L++L
Sbjct: 529 RRKLPAPLRQL 539

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085123|emb|CBI28618.3| unnamed protein product [Vitis vinifera]

 Score =  221 bits (563), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 144/382 (37%), Positives = 216/382 (56%), Gaps = 16/382 (4%)

Query: 1    MLEPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLA 60
            ML+PH+NL+   I  Y G +FP+W GD SFS +  L  + C  C +LPS+GQLP LK L 
Sbjct: 653  MLQPHENLKNLSIEYYGGTEFPSWVGDPSFSKMEYLNLKGCKKCISLPSLGQLPLLKELI 712

Query: 61   VCGMTSVKRLGSEFYGK--GAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLREL 118
            + GM  +K +G +FYG    +  PF  LETL+F+ +  WE+W     G GVEGFP LREL
Sbjct: 713  IEGMDGIKHVGPQFYGDDYSSIDPFQSLETLKFENIEEWEEWSSFGDG-GVEGFPCLREL 771

Query: 119  HILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWRSATDHL 178
             I +C KL    P +LP+LE + I+ C++L+V +  L  L  L + G    +  +  D  
Sbjct: 772  SIFKCPKLTSKLPNYLPSLEGVWIDDCEKLAV-LPKLVKLLNLDLLGSNVEILGTMVDLR 830

Query: 179  GSQNSVVCRDTSNQVFLAGPLKPQLPKLEEL-ILSTKEQTYIWKSHDGLLQDICSLKKLT 237
                  + + ++ ++F  G ++ Q  KLEEL I++  +   +     GL   + SL++LT
Sbjct: 831  SLTFLQINQISTLKIFPEGFMQ-QSAKLEELKIVNCGDLVALSNQQLGLAH-LASLRRLT 888

Query: 238  IDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYD 297
            I  CPKL +L  E  K        +  RLE L ++ C  L KLP     L SL E+ +  
Sbjct: 889  ISGCPKLVALPDEVNK--------MPPRLESLDIKDCHNLEKLPDELFKLESLSELRVEG 940

Query: 298  CSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGVQ 357
            C  L SFP++ LPSKLK++ I+ C A+K++ +  +  +N+SLE L+I  C SL  +    
Sbjct: 941  CQKLESFPDMGLPSKLKRLVIQNCGAMKAIQDGNL-RSNTSLEFLEIRSCSSLVSVLEGG 999

Query: 358  LPPSLKRLDIWNCDNIRTLTVE 379
            +P +LK + I  C ++++L VE
Sbjct: 1000 IPTTLKYMRISYCKSLKSLPVE 1021

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|284026888|gb|ADB66335.1| CC-NBS-LRR protein [Quercus suber]

 Score =  221 bits (563), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 147/377 (38%), Positives = 192/377 (50%), Gaps = 64/377 (16%)

Query: 1    MLEPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLA 60
            ML+P+  L++  +  Y G KFPTW GD SFSNLV L+FE C  C +LP VGQLP LK L 
Sbjct: 757  MLQPNVKLKELTVKCYGGTKFPTWIGDPSFSNLVLLRFENCDNCNSLPPVGQLPFLKDLL 816

Query: 61   VCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGV-EGFPKLRELH 119
            + GM  VK +G EFYG+  + PF  LETL F+ M  W +WIPL    GV E F  L +L 
Sbjct: 817  IKGMAGVKSVGREFYGESCSRPFQSLETLHFEDMPRWVNWIPL----GVNEAFACLHKLS 872

Query: 120  ILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWRSATDHLG 179
            I+RC  L    P+HLP+L+ LVI  C  + VSVS+LP LC L I GCK+V   S+     
Sbjct: 873  IIRCHNLVRKLPDHLPSLKKLVIHGCWNMVVSVSNLPMLCVLVIEGCKRVECESS----- 927

Query: 180  SQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTID 239
                         V    P      K+ E   +T           GL+  +  ++ L I 
Sbjct: 928  -------------VGFGSPYSMAFSKISEFGNATA----------GLMHGVSKVEYLKIV 964

Query: 240  WCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCS 299
               KL +L                               K+P+    L  LRE+ I DC 
Sbjct: 965  DSEKLTTLWE-----------------------------KIPEGLHRLKFLRELSIEDCP 995

Query: 300  SLVSFPEVALPSKLKKIEIRKCDALKSL-PEAWM-CDTNSSLETLKIERCRSLTYIAGVQ 357
            +LVSFP    PS LK I+I+ C  LKSL PE  +    N+ LE L + RC S+  IA  Q
Sbjct: 996  TLVSFPASGFPSMLKVIQIKSCSGLKSLLPEGTLHSRENACLERLCVVRCDSMKSIARGQ 1055

Query: 358  LPPSLKRLDIWNCDNIR 374
            LP +LK+L+I +C N++
Sbjct: 1056 LPTTLKKLEISHCMNLQ 1072

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449649|ref|XP_002262753.1| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]

 Score =  220 bits (561), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 150/383 (39%), Positives = 203/383 (53%), Gaps = 24/383 (6%)

Query: 1    MLEPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLA 60
             L+P+ NL++  I  Y G  FP W GD SFS +V L+  YC  C  LPS+G+L SLK L 
Sbjct: 767  FLQPNTNLKKLTIQSYGGLTFPYWIGDPSFSKMVCLELNYCRKCTLLPSLGRLSSLKKLC 826

Query: 61   VCGMTSVKRLGSEFYGKGA--AIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLREL 118
            V GM  VK +G EFYG+ +    PFP LE LRF+ M  WE+W         E +P+LREL
Sbjct: 827  VKGMQGVKSVGIEFYGEPSLCVKPFPSLEFLRFEDMPEWEEWC------SSESYPRLREL 880

Query: 119  HILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWRSATDHL 178
             I  C KL    P HLP+L  L I  C +L   + SLP L  L +  C + + RS  D L
Sbjct: 881  EIHHCPKLIQKLPSHLPSLVKLDIIDCPKLVAPLPSLPFLRDLIVAECNEAMLRSGGD-L 939

Query: 179  GSQNSVVCRDTSNQVFLAGPLKPQLPKLEEL-ILSTKEQTYIWKSHDGLLQDICSLKKLT 237
             S  ++   + SN  FL   L   L  LE L I +  E  ++ +S  G  +++  ++ L 
Sbjct: 940  TSLITLRLENISNLTFLNEGLVRFLGALEVLEICNCSELKFLLQSGVG-FENLSCIRHLV 998

Query: 238  IDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYD 297
            I  CPKL  L+AE++         L C LEYL +  C  L KLP    SL+SLRE+ I  
Sbjct: 999  IVMCPKL-VLLAEDQP--------LPCNLEYLEINKCASLEKLPIGLQSLTSLRELSIQK 1049

Query: 298  CSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSS----LETLKIERCRSLTYI 353
            C  L S  E+  P  L  +E+  C+ L+SLP+  M +  +     LE LKI  C SL   
Sbjct: 1050 CPKLCSLAEMDFPPMLISLELYDCEGLESLPDGMMINGENRNFCLLECLKIVHCPSLICF 1109

Query: 354  AGVQLPPSLKRLDIWNCDNIRTL 376
               +LP  LK L+I +C  +++L
Sbjct: 1110 PRGELPSKLKELEIIDCAKLQSL 1132

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|400131587|emb|CCH50986.1| FB_MR5 [Malus x robusta]

 Score =  218 bits (554), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 160/412 (38%), Positives = 231/412 (56%), Gaps = 40/412 (9%)

Query: 1    MLEPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLA 60
            ML+PH  L++  I  Y G +F +W G   FSN+V ++ E C  C +LP +G+LP LK L 
Sbjct: 756  MLQPHTKLKELTIKSYAGKEFSSWVGVPLFSNMVLVRLEECNNCLSLPPLGKLPHLKELY 815

Query: 61   VCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHI 120
            + GM +V+ +G+EFYG+  ++PFP LETL F  M  W+ W+P ++      FP L+ L +
Sbjct: 816  IRGMNAVESVGAEFYGE-CSLPFPLLETLEFVDMQHWKVWLPFQTDHRGSVFPCLKTLLV 874

Query: 121  LRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWRSATDHLGS 180
             +CSKL+G  PE+L +L  L I  C+EL VS+++   L +L I GCK VV  +A      
Sbjct: 875  RKCSKLEGKLPENLDSLASLEIVKCEELLVSIANYKQLRQLNIDGCKGVVHTAAKVEFEL 934

Query: 181  QNSVVCRDTSNQVFL-AGPL-KPQLPKLEEL-ILSTKEQTYIWKSHDGLLQDICSLKKLT 237
              S+   + S    L  G L +  L  + +L I   +E T   K+   LLQ + SL +L 
Sbjct: 935  LESLYLSNISELTSLQTGELCRNGLNMVRDLKINGCEELTSSLKNEAILLQQLISLGRLE 994

Query: 238  IDWCPKLQSLVAEE---EKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREID 294
            I+      SL+ EE   E D+  QL  L C+LE+L+L+ CK L+KLP+    LSSL+E+ 
Sbjct: 995  IE----DNSLLVEELGKEADELLQLQILGCKLEFLKLKKCKNLLKLPEGLNQLSSLQELR 1050

Query: 295  IYDCSSLVSFPEVALPSKLKKIE-----------------------IRKCDALKSLPEAW 331
            I++CSSLVSFP+V LP  LK IE                       IR C +L+SL +  
Sbjct: 1051 IHECSSLVSFPDVGLPPSLKDIEITECHSLIYFAKSQIPQNLRRIQIRDCRSLRSLVDNE 1110

Query: 332  MCDTNSS-----LETLKIERCRSLTYIA-GVQLPPSLKRLDIWNCDNIRTLT 377
               + SS     LE L IERC+SLT ++   QL  +L+ LDI++C+ +  L 
Sbjct: 1111 AVGSCSSSSHNCLEYLNIERCQSLTLLSLSDQLVRALRELDIYDCEQLEFLA 1162

Source: Malus x robusta

Species: Malus x robusta

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495026|ref|XP_003634900.1| PREDICTED: uncharacterized protein LOC100854556 [Vitis vinifera]

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 139/379 (36%), Positives = 209/379 (55%), Gaps = 18/379 (4%)

Query: 1    MLEPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLA 60
            +L+P +NL++  +  Y G KFP+W G+ SFS + +L  + CG C +LP +G+L  LK L 
Sbjct: 766  LLQPQRNLKKLTVEFYGGPKFPSWIGNPSFSKMESLTLKNCGKCTSLPCLGRLSLLKALR 825

Query: 61   VCGMTSVKRLGSEFYGKGAAI-PFPRLETLRFDAMLGWEDWIPLRSGQGVEG-FPKLREL 118
            + GM  VK +G EF+G+ +   PFP LE+LRF+ M  WEDW      +  EG F  LREL
Sbjct: 826  IQGMCKVKTIGDEFFGEVSLFKPFPCLESLRFEDMPEWEDWCFSDMVEECEGLFSCLREL 885

Query: 119  HILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWRSATDHL 178
             I  C KL G+ P  LP+L  L I  C +L  ++  L  +C L +  C +VV R+  D L
Sbjct: 886  RIRECPKLTGSLPNCLPSLAELEIFECPKLKAALPRLAYVCSLNVVECNEVVLRNGVD-L 944

Query: 179  GSQNSVVCRDTSNQVFLAGPLKPQLPKLEELIL-STKEQTYIWKSHDGLLQDICSLKKLT 237
             S  ++  +  S    L       L  L++L++    E T +W++  G L+ +  L+ + 
Sbjct: 945  SSLTTLNIQRISRLTCLREGFTQLLAALQKLVIRGCGEMTSLWENRFG-LECLRGLESID 1003

Query: 238  IDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYD 297
            I  C  L+SL  EE++        L C L++L++  C  L +LP    SL+ L E+ +  
Sbjct: 1004 IWQCHGLESL--EEQR--------LPCNLKHLKIENCANLQRLPNGLQSLTCLEELSLQS 1053

Query: 298  CSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGVQ 357
            C  L SFPE+ LP  L+ + ++KC+ LK LP  +    +  LE L+IE C  L      +
Sbjct: 1054 CPKLESFPEMGLPPMLRSLVLQKCNTLKLLPHNY---NSGFLEYLEIEHCPCLISFPEGE 1110

Query: 358  LPPSLKRLDIWNCDNIRTL 376
            LP SLK+L I +C N++TL
Sbjct: 1111 LPASLKQLKIKDCANLQTL 1129

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450023|ref|XP_002272823.1| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera] gi|451798994|gb|AGF69195.1| disease resistance protein At3g14460-like protein 2 [Vitis labrusca]

 Score =  210 bits (535), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 142/401 (35%), Positives = 193/401 (48%), Gaps = 58/401 (14%)

Query: 2    LEPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAV 61
            L+PH NL +  I  Y G +FP W GD SFS +V +    C  C +LP +G LP LKH+ +
Sbjct: 770  LQPHFNLNKLKIEYYGGPEFPPWIGDVSFSKMVDVNLVNCRNCTSLPCLGWLPMLKHVRI 829

Query: 62   CGMTSVKRLGSEFYGKG--AAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELH 119
             G+  VK +G EFYG+      PFP LE+L F AM  WEDW    S    E +P L  L 
Sbjct: 830  EGLKEVKIVGREFYGETCLPNKPFPSLESLSFSAMSQWEDW---ESPSLSEPYPCLLHLE 886

Query: 120  ILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWRSATDHLG 179
            I+ C KL    P +LP+L    I  C +L   +  LP+L KL++  C + V RS      
Sbjct: 887  IINCPKLIKKLPTNLPSLVHFSIGTCPQLVSPLERLPSLSKLRVQDCNEAVLRSGL---- 942

Query: 180  SQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTID 239
                                  +LP L E  L       + + H+G +Q +  L+ L ID
Sbjct: 943  ----------------------ELPSLTE--LGIDRMVGLTRLHEGCMQLLSGLQVLDID 978

Query: 240  WCPKLQSLVAEEEKDQQQQLCELSC----------------RLEYLRLRYCKGLVKLPQS 283
             C KL  L  E   D  QQL   SC                +L+ L++R+C  L KLP  
Sbjct: 979  RCDKLTCL-WENGFDGIQQLQTSSCPELVSLGEKEKHELPSKLQSLKIRWCNNLEKLPNG 1037

Query: 284  SLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSS----- 338
               L+ L E++IYDC  LVSFPE+  P  L+++ I  C+ L+ LP+  M   + S     
Sbjct: 1038 LYRLTCLGELEIYDCPKLVSFPELGFPPMLRRLVIHSCEGLRCLPDWMMVMKDGSNNGSD 1097

Query: 339  ---LETLKIERCRSLTYIAGVQLPPSLKRLDIWNCDNIRTL 376
               LE L I  C SL      +LP +LK L IW C+ + +L
Sbjct: 1098 VCLLEYLHIHTCPSLIGFPEGELPTTLKELKIWRCEKLESL 1138

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147860511|emb|CAN79726.1| hypothetical protein VITISV_014536 [Vitis vinifera]

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 138/379 (36%), Positives = 207/379 (54%), Gaps = 18/379 (4%)

Query: 1    MLEPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLA 60
            +L+P +NL++  +  Y G KFP+W G+ SFS + +L  + CG C +LP +G+L  LK L 
Sbjct: 767  LLQPQRNLKKLTVEFYGGPKFPSWIGNPSFSKMESLTLKNCGKCTSLPCLGRLSLLKALR 826

Query: 61   VCGMTSVKRLGSEFYGKGAAI-PFPRLETLRFDAMLGWEDWIPLRSGQGVEG-FPKLREL 118
            + GM  VK +G EF+G+ +   PFP LE+LRF+ M  WEDW      +  EG F  LREL
Sbjct: 827  IQGMCKVKTIGDEFFGEVSLFQPFPCLESLRFEDMPEWEDWCFSDMVEECEGLFSCLREL 886

Query: 119  HILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWRSATDHL 178
             I  C KL G+ P  LP+L  L I  C +L  ++  L  +C L +  C +VV R+  D L
Sbjct: 887  RIRECPKLTGSLPNCLPSLAELEIFECPKLKAALPRLAYVCSLNVVECNEVVLRNGVD-L 945

Query: 179  GSQNSVVCRDTSNQVFLAGPLKPQLPKLEELIL-STKEQTYIWKSHDGLLQDICSLKKLT 237
             S  ++  +  S    L       L  L++L++    E T +W++  G L+ +  L+ + 
Sbjct: 946  SSLTTLNIQRISRLTCLREGFTQLLAALQKLVIRGCGEMTSLWENRFG-LECLRGLESID 1004

Query: 238  IDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYD 297
            I  C  L SL  EE++        L C L++L++  C  L +LP     L+ L E+ +  
Sbjct: 1005 IWQCHGLVSL--EEQR--------LPCNLKHLKIENCANLQRLPNGLQRLTCLEELSLQS 1054

Query: 298  CSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGVQ 357
            C  L SFPE+ LP  L+ + ++KC+ LK LP  +    +  LE L+IE C  L      +
Sbjct: 1055 CPKLESFPEMGLPPMLRSLVLQKCNTLKLLPHNY---NSGFLEYLEIEHCPCLISFPEGE 1111

Query: 358  LPPSLKRLDIWNCDNIRTL 376
            LP SLK+L I +C N++TL
Sbjct: 1112 LPASLKQLKIKDCANLQTL 1130

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495024|ref|XP_002267933.2| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera]

 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 138/379 (36%), Positives = 207/379 (54%), Gaps = 18/379 (4%)

Query: 1    MLEPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLA 60
            +L+P +NL++  +  Y G KFP+W G+ SFS + +L  + CG C +LP +G+L  LK L 
Sbjct: 767  LLQPQRNLKKLTVEFYGGPKFPSWIGNPSFSKMESLTLKNCGKCTSLPCLGRLSLLKALR 826

Query: 61   VCGMTSVKRLGSEFYGKGAAI-PFPRLETLRFDAMLGWEDWIPLRSGQGVEG-FPKLREL 118
            + GM  VK +G EF+G+ +   PFP LE+LRF+ M  WEDW      +  EG F  LREL
Sbjct: 827  IQGMCKVKTIGDEFFGEVSLFQPFPCLESLRFEDMPEWEDWCFSDMVEECEGLFSCLREL 886

Query: 119  HILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWRSATDHL 178
             I  C KL G+ P  LP+L  L I  C +L  ++  L  +C L +  C +VV R+  D L
Sbjct: 887  RIRECPKLTGSLPNCLPSLAELEIFECPKLKAALPRLAYVCSLNVVECNEVVLRNGVD-L 945

Query: 179  GSQNSVVCRDTSNQVFLAGPLKPQLPKLEELIL-STKEQTYIWKSHDGLLQDICSLKKLT 237
             S  ++  +  S    L       L  L++L++    E T +W++  G L+ +  L+ + 
Sbjct: 946  SSLTTLNIQRISRLTCLREGFTQLLAALQKLVIRGCGEMTSLWENRFG-LECLRGLESID 1004

Query: 238  IDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYD 297
            I  C  L SL  EE++        L C L++L++  C  L +LP     L+ L E+ +  
Sbjct: 1005 IWQCHGLVSL--EEQR--------LPCNLKHLKIENCANLQRLPNGLQRLTCLEELSLQS 1054

Query: 298  CSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGVQ 357
            C  L SFPE+ LP  L+ + ++KC+ LK LP  +    +  LE L+IE C  L      +
Sbjct: 1055 CPKLESFPEMGLPPMLRSLVLQKCNTLKLLPHNY---NSGFLEYLEIEHCPCLISFPEGE 1111

Query: 358  LPPSLKRLDIWNCDNIRTL 376
            LP SLK+L I +C N++TL
Sbjct: 1112 LPASLKQLKIKDCANLQTL 1130

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766392|emb|CAN67818.1| hypothetical protein VITISV_007674 [Vitis vinifera]

 Score =  208 bits (529), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 141/401 (35%), Positives = 198/401 (49%), Gaps = 58/401 (14%)

Query: 2    LEPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAV 61
            L+PH NL +  I  Y G +FP W GD SFS +V +    C  C +LP +G LP LKH+ +
Sbjct: 771  LQPHFNLNKLKIGYYGGPEFPPWIGDVSFSKMVDINLVNCRNCTSLPCLGWLPMLKHVRI 830

Query: 62   CGMTSVKRLGSEFYGKG--AAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELH 119
             G+  VK +G EFYG+      PFP LE+L F AM  WEDW    S    E +P L  L 
Sbjct: 831  EGLNEVKIVGREFYGETCLPNKPFPSLESLSFSAMSQWEDW---ESPSLSEPYPCLLHLE 887

Query: 120  ILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWRSATDHLG 179
            I+ C KL    P +LP+L  L I+ C +    +  LP+L KL++G C + V RS      
Sbjct: 888  IINCPKLIKKLPTNLPSLVHLSIDTCPQWVSPLERLPSLSKLRVGDCNEAVLRSGL---- 943

Query: 180  SQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTID 239
                                  +LP L E  L  +    + + H+G +Q +  L+ L ID
Sbjct: 944  ----------------------ELPSLTE--LRIERIVGLTRLHEGCMQLLSGLQVLDID 979

Query: 240  WCPKLQSLVAEEEKDQQQQLCELSC----------------RLEYLRLRYCKGLVKLPQS 283
             C +L  L  E   D  QQL   SC                +L+ L++  C  L KLP  
Sbjct: 980  RCDELTCL-WENGFDGIQQLQTSSCPELVSLGEKEKHKLPSKLQSLKILRCNNLEKLPNG 1038

Query: 284  SLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSS----- 338
               L+ L E++IY+C  LVSFPE+  P  L+++ I  C+ L+ LP+  M   + S     
Sbjct: 1039 LHRLTCLGELEIYNCPKLVSFPELGFPPMLRRLVIVSCEGLRCLPDWMMVMKDGSNNGSD 1098

Query: 339  ---LETLKIERCRSLTYIAGVQLPPSLKRLDIWNCDNIRTL 376
               LE L+I+RC SL      +LP +LK+L IW C+ + +L
Sbjct: 1099 VCLLEYLEIDRCPSLIGFPEGELPTTLKQLRIWECEKLESL 1139

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	387
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.385	0.104	0.402	1.3e-36
TAIR|locus:2091672	1054	AT3G14470 [Arabidopsis thalian	0.369	0.135	0.42	4.7e-33
UNIPROTKB|O48647	1802	O48647 "XA1" [Oryza sativa (ta	0.273	0.058	0.301	1.5e-11
TAIR|locus:2100182	1007	AT3G44400 [Arabidopsis thalian	0.341	0.131	0.282	1.7e-08
TAIR|locus:2098110	1219	AT3G44670 [Arabidopsis thalian	0.302	0.095	0.275	3.6e-07
TAIR|locus:2076043	1194	RPP1 "recognition of peronospo	0.281	0.091	0.312	9.6e-07
TAIR|locus:2163426	1187	TAO1 "target of AVRB operation	0.273	0.089	0.318	4.3e-05
TAIR|locus:2175019	809	AT5G66900 [Arabidopsis thalian	0.322	0.154	0.338	2.7e-06
TAIR|locus:2094498	1981	AT3G25510 [Arabidopsis thalian	0.276	0.054	0.303	4.1e-06
TAIR|locus:2205804	1556	AT1G27180 [Arabidopsis thalian	0.263	0.065	0.252	5.8e-06

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
 Identities = 62/154 (40%), Positives = 93/154 (60%)

Query:     1 MLEPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLA 60
             MLEPH +L+ FCI  Y+G  FP W GDSSF  + ++    C +C +LP VGQLPSLK+L+
Sbjct:   754 MLEPHPHLKTFCIESYQGGAFPKWLGDSSFFGITSVTLSSCNLCISLPPVGQLPSLKYLS 813

Query:    61 VCGMTSVKRLGSEFY-GKGAA--IPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRE 117
             +     ++++G +F+ G+  +  +PF  L+ L+F  M  W++WI      G+  FP L++
Sbjct:   814 IEKFNILQKVGLDFFFGENNSRGVPFQSLQILKFYGMPRWDEWICPELEDGI--FPCLQK 871

Query:   118 LHILRCSKLQGTFPEHLPALEMLVIEACKELSVS 151
             L I RC  L+  FPE LP+   + I  C   +VS
Sbjct:   872 LIIQRCPSLRKKFPEGLPSSTEVTISDCPLRAVS 905

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 4.7e-33, Sum P(2) = 4.7e-33
 Identities = 63/150 (42%), Positives = 91/150 (60%)

Query:     2 LEPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAV 61
             L PH+++E+  I  Y+G +FP W  D SFS +V ++   C  C +LPS+GQLP LK L +
Sbjct:   761 LRPHRHIEKLAIERYKGRRFPDWLSDPSFSRIVCIRLRECQYCTSLPSLGQLPCLKELHI 820

Query:    62 CGMTSVKRLGSEFYGKGAAI------PFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKL 115
              GM  ++ +G +FY     +      PF  LETLRFD +  W++W+ +R  +G + FP L
Sbjct:   821 SGMVGLQSIGRKFYFSDQQLRDQDQQPFRSLETLRFDNLPDWQEWLDVRVTRG-DLFPSL 879

Query:   116 RELHILRCSKLQGTFPEHLPALEMLVIEAC 145
             ++L ILRC +L GT P  LP+L  L I  C
Sbjct:   880 KKLFILRCPELTGTLPTFLPSLISLHIYKC 909

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

UNIPROTKB|O48647 O48647 "XA1" [Oryza sativa (taxid:4530)]

 Score = 125 (49.1 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
 Identities = 35/116 (30%), Positives = 59/116 (50%)

Query:   230 ICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQXXXXXXX 289
             + SL++L +++C    S VA    D+Q++  +L   L+ LR +YC  L+ LP        
Sbjct:  1690 LTSLQRLELNYCG---SEVARLT-DEQERALQLLTSLQELRFKYCYNLIDLPAGLHSLPS 1745

Query:   290 XREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIE 345
              + ++I  C S+   PE  LP   ++++I  C     L  A  C T +S  TLK++
Sbjct:  1746 LKRLEIRSCRSIARLPEKGLPPSFEELDIIACS--NEL--AQQCRTLAS--TLKVK 1795

GO:0006915 "apoptotic process" evidence=IGI

GO:0006952 "defense response" evidence=IGI

TAIR|locus:2100182 AT3G44400 [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 39/138 (28%), Positives = 71/138 (51%)

Query:   252 EKDQQQQLCELSC--RLEYLRLRYCKGLVKLPQXXXXXXXXREIDIYDCSSLVSFPEVAL 309
             + +  ++L  LS    LE L+LR C  LV+LP         + +D++ CSSLV  P    
Sbjct:   679 DSEDLKELPNLSTATNLEELKLRRCSSLVELPSSIEKLTSLQILDLHSCSSLVELPSFGN 738

Query:   310 PSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGVQLPPSLKRLDIWN 369
              +KL+K+++  C +L  LP +   + N+ L+ L +  C  +  +  ++   +L+ L + N
Sbjct:   739 ATKLEKLDLENCSSLVKLPPS--INANN-LQELSLRNCSRVVELPAIENATNLRELKLQN 795

Query:   370 CDNIRTLTVEEGVQSSSR 387
             C ++  L +   V+  SR
Sbjct:   796 CSSLIELPLS-WVKRMSR 812

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2098110 AT3G44670 [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 33/120 (27%), Positives = 63/120 (52%)

Query:   266 LEYLRLRYCKGLVKLPQXXXXXXXXREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALK 325
             LE L+LR C  LV+LP         + + +  CSSLV  P     +KL+++ +  C +L+
Sbjct:   741 LEELKLRDCSSLVELPSSIEKLTSLQRLYLQRCSSLVELPSFGNATKLEELYLENCSSLE 800

Query:   326 SLPEAWMCDTNSSLETLKIERCRSLTYIAGVQLPPSLKRLDIWNCDNIRTLTVEEGVQSS 385
              LP +   + N+ L+ L +  C  +  +  ++   +L++LD+ NC ++  L +  G  ++
Sbjct:   801 KLPPS--INANN-LQQLSLINCSRVVELPAIENATNLQKLDLGNCSSLIELPLSIGTATN 857

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=ISS

TAIR|locus:2076043 RPP1 "recognition of peronospora parasitica 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 9.6e-07, P = 9.6e-07
 Identities = 35/112 (31%), Positives = 61/112 (54%)

Query:   266 LEYLRLRYCKGLVKLPQXXXXXXXXREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALK 325
             LE L+LR C  LV+LP         + +D+ +CSSL   P +   +KL++++++ C +L 
Sbjct:   739 LEELKLRNCSSLVELPSSIEKLTSLQILDLENCSSLEKLPAIENATKLRELKLQNCSSLI 798

Query:   326 SLPEAWMCDTNSSLETLKIERCRSLTYI-AGVQLPPSLKRLDIWNCDNIRTL 376
              LP +    T ++L+ L I  C SL  + + +     L+  D+ NC ++ TL
Sbjct:   799 ELPLS--IGTATNLKQLNISGCSSLVKLPSSIGDITDLEVFDLSNCSSLVTL 848

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0002239 "response to oomycetes" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP;TAS

GO:0030275 "LRR domain binding" evidence=ISS

TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 4.3e-05, P = 4.3e-05
 Identities = 35/110 (31%), Positives = 57/110 (51%)

Query:   266 LEYLRLRYCKGLVKLPQXXXXXXXXREIDIYDCSSLVSFPE-VALPSKLKKIEIRKCDAL 324
             L+ LRL  C  LV+LP          E+D+ DCSSLV  P  +   + LKK+ + +C +L
Sbjct:   682 LQELRLINCLSLVELPSSIGNATNLLELDLIDCSSLVKLPSSIGNLTNLKKLFLNRCSSL 741

Query:   325 KSLPEAWMCDTNSSLETLKIERCRSLTYI-AGVQLPPSLKRLDIWNCDNI 373
               LP ++     +SL+ L +  C SL  I + +    +LK++    C ++
Sbjct:   742 VKLPSSF--GNVTSLKELNLSGCSSLLEIPSSIGNIVNLKKVYADGCSSL 789

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2175019 AT5G66900 [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
 Identities = 48/142 (33%), Positives = 68/142 (47%)

Query:   227 LQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQXXXX 286
             + +I SLK L+I  C KL  L         + +  LS RLE LRL     L +LP+    
Sbjct:   669 ISEIVSLKTLSITNCNKLSQL--------PEAIGNLS-RLEVLRLCSSMNLSELPEATEG 719

Query:   287 XXXXREIDIYDCSSLVSFP-EVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIE 345
                 R +DI  C  L   P E+     LKKI +RKC   + LPE+    TN  LE L++ 
Sbjct:   720 LSNLRFLDISHCLGLRKLPQEIGKLQNLKKISMRKCSGCE-LPESV---TN--LENLEV- 772

Query:   346 RCRSLTYIAGVQLPPSLKRLDI 367
             +C   T +   +L P ++ L +
Sbjct:   773 KCDEETGLLWERLKPKMRNLRV 794

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
 Identities = 34/112 (30%), Positives = 54/112 (48%)

Query:   266 LEYLRLRYCKGLVKLPQXXXXXXXXREIDIYDCSSLVSFPE-VALPSKLKKIEIRKCDAL 324
             L+ L L  C  LVKLP           +D+  CSSLV  P  +   + L+++ +  C  L
Sbjct:   903 LQVLNLHNCSNLVKLPSSFGHATNLWRLDLSGCSSLVELPSSIGNITNLQELNLCNCSNL 962

Query:   325 KSLPEAWMCDTNSSLETLKIERCRSLTYI-AGVQLPPSLKRLDIWNCDNIRT 375
               LP +        L TL + RC+ L  + + + L  SL+RLD+ +C   ++
Sbjct:   963 VKLPSS--IGNLHLLFTLSLARCQKLEALPSNINLK-SLERLDLTDCSQFKS 1011

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2205804 AT1G27180 [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
 Identities = 27/107 (25%), Positives = 52/107 (48%)

Query:   280 LPQXXXXXXXXREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSL 339
             LP         +E+ + DC  L   P   LP KL+++ +  C +L+S+ +       + L
Sbjct:  1275 LPSSLVKLSNLQELSLRDCRELKRLPP--LPCKLEQLNLANCFSLESVSDL---SELTIL 1329

Query:   340 ETLKIERCRSLTYIAGVQLPPSLKRLDIWNCDNIRTLTVEEGVQSSS 386
               L +  C  +  I G++   +LKRL +  C++  +L V++ +  +S
Sbjct:  1330 TDLNLTNCAKVVDIPGLEHLTALKRLYMTGCNSNYSLAVKKRLSKAS 1376

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	387
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-04
PRK15386	426	PRK15386, PRK15386, type III secretion protein Gog	6e-04
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.002

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 14/110 (12%)

Query: 277 LVKL--PQSSL--------SLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKS 326
           LVKL    S L        SL+ LR ID+    +L   P++++ + L+ +++  C +L  
Sbjct: 613 LVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVE 672

Query: 327 LPEAWMCDTNSSLETLKIERCRSLTYI-AGVQLPPSLKRLDIWNCDNIRT 375
           LP +      + LE L + RC +L  +  G+ L  SL RL++  C  +++
Sbjct: 673 LPSS--IQYLNKLEDLDMSRCENLEILPTGINL-KSLYRLNLSGCSRLKS 719

syringae 6; Provisional. Length = 1153

>gnl|CDD|237954 PRK15386, PRK15386, type III secretion protein GogB; Provisional

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 16/99 (16%)

Query: 289 SLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEA------------WMCDTN 336
            L EI I +C++L + P  ++P  L+K+ +  C  +  LPE+             + +  
Sbjct: 73  ELTEITIENCNNLTTLPG-SIPEGLEKLTVCHCPEISGLPESVRSLEIKGSATDSIKNVP 131

Query: 337 SSLETLKIE--RCRSLTYIAGVQLPPSLKRLDIWNCDNI 373
           + L +L I      +   I  + + PSLK L +  C NI
Sbjct: 132 NGLTSLSINSYNPENQARIDNL-ISPSLKTLSLTGCSNI 169

Length = 426

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 55/237 (23%), Positives = 103/237 (43%), Gaps = 45/237 (18%)

Query: 115 LRELHILRCSKLQ--GTFPEHLPALEMLVIEACKELSVSVS--SLPALCKLKIGGCKKVV 170
           L  L +  CS L    +  ++L  LE L +  C+ L +  +  +L +L +L + GC ++ 
Sbjct: 659 LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRL- 717

Query: 171 WRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDI 230
            +S  D   + + +   +T+ + F   P   +L  L+ELIL   +   +W+     +Q +
Sbjct: 718 -KSFPDISTNISWLDLDETAIEEF---PSNLRLENLDELILCEMKSEKLWER----VQPL 769

Query: 231 CSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSL 290
             L  +                         LS  L  L L     LV+LP S  +L  L
Sbjct: 770 TPLMTM-------------------------LSPSLTRLFLSDIPSLVELPSSIQNLHKL 804

Query: 291 REIDIYDCSSLVSFPE-VALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIER 346
             ++I +C +L + P  + L S L+ +++  C  L++ P     D ++++  L + R
Sbjct: 805 EHLEIENCINLETLPTGINLES-LESLDLSGCSRLRTFP-----DISTNISDLNLSR 855

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	387
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.91
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.91
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.75
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.75
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.7
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.59
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.53
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.53
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.51
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.46
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.39
KOG4341	483	consensus F-box protein containing LRR [General fu	99.37
KOG4341	483	consensus F-box protein containing LRR [General fu	99.34
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.34
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.17
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.14
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.11
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.91
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.86
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.63
PRK15386	426	type III secretion protein GogB; Provisional	98.57
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.52
PRK15386	426	type III secretion protein GogB; Provisional	98.51
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.51
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.48
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.19
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.17
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.13
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.06
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.04
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.01
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.0
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.95
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.94
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.9
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.65
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.6
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.58
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.49
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.47
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.44
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.36
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.34
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.28
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.03
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.02
PLN03150	623	hypothetical protein; Provisional	96.95
PLN03150	623	hypothetical protein; Provisional	96.73
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.63
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.56
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.12
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.03
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	95.99
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.83
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.73
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.3
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.19
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.81
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.68
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.5
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	93.51
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	92.31
KOG2123	388	consensus Uncharacterized conserved protein [Funct	92.01
KOG2123	388	consensus Uncharacterized conserved protein [Funct	91.78
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	91.64
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	90.82
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	88.83
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	88.41
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	87.81
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	86.88
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	81.87

>PLN03210 Resistant to P

Probab=99.93  E-value=1.1e-24  Score=228.63  Aligned_cols=338  Identities=21%  Similarity=0.294  Sum_probs=243.7

Q ss_pred             CCCCCCCcEEEEcCcCC-------CCCCCccCCccC-CCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCcc
Q 043667            2 LEPHKNLEQFCISGYRG-------AKFPTWFGDSSF-SNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSE   73 (387)
Q Consensus         2 ~~~~~~L~~L~l~~~~~-------~~~p~~~~~~~l-~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~   73 (387)
                      |+.+.+|+.|.++....       ..+|..+..  + ++|+.|++.++ .++.+|..-...+|+.|++.++ .++.++..
T Consensus       554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~--lp~~Lr~L~~~~~-~l~~lP~~f~~~~L~~L~L~~s-~l~~L~~~  629 (1153)
T PLN03210        554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDY--LPPKLRLLRWDKY-PLRCMPSNFRPENLVKLQMQGS-KLEKLWDG  629 (1153)
T ss_pred             HhcCccccEEEEecccccccccceeecCcchhh--cCcccEEEEecCC-CCCCCCCcCCccCCcEEECcCc-cccccccc
Confidence            56778899888875432       234544433  3 36888888875 6678887556788899998887 56666554


Q ss_pred             ccCCCcccCCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCC---CCCccEEEeccCccccc
Q 043667           74 FYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEH---LPALEMLVIEACKELSV  150 (387)
Q Consensus        74 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~---~~~L~~L~l~~~~~l~~  150 (387)
                            ...+++|+.|+++++..+...      ..+..+++|+.|++.+|..+. .+|..   +++|+.|++++|..+..
T Consensus       630 ------~~~l~~Lk~L~Ls~~~~l~~i------p~ls~l~~Le~L~L~~c~~L~-~lp~si~~L~~L~~L~L~~c~~L~~  696 (1153)
T PLN03210        630 ------VHSLTGLRNIDLRGSKNLKEI------PDLSMATNLETLKLSDCSSLV-ELPSSIQYLNKLEDLDMSRCENLEI  696 (1153)
T ss_pred             ------cccCCCCCEEECCCCCCcCcC------CccccCCcccEEEecCCCCcc-ccchhhhccCCCCEEeCCCCCCcCc
Confidence                  346788888988877665444      223457888999998887776 56654   57888888888875541


Q ss_pred             --cccCCCCcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCc------ccc
Q 043667          151 --SVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYI------WKS  222 (387)
Q Consensus       151 --~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~------~~~  222 (387)
                        ....+++|+.|++++|..+....  ...++|++|++.++. +..+|..  -.+++|++  |.+..+...      ..+
T Consensus       697 Lp~~i~l~sL~~L~Lsgc~~L~~~p--~~~~nL~~L~L~~n~-i~~lP~~--~~l~~L~~--L~l~~~~~~~l~~~~~~l  769 (1153)
T PLN03210        697 LPTGINLKSLYRLNLSGCSRLKSFP--DISTNISWLDLDETA-IEEFPSN--LRLENLDE--LILCEMKSEKLWERVQPL  769 (1153)
T ss_pred             cCCcCCCCCCCEEeCCCCCCccccc--cccCCcCeeecCCCc-ccccccc--cccccccc--ccccccchhhcccccccc
Confidence              11257888889988887655221  234678888888654 4444433  14566666  655543211      111


Q ss_pred             cccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCce
Q 043667          223 HDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLV  302 (387)
Q Consensus       223 ~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~  302 (387)
                      +......+++|+.|++++|+.+..+|.     ++..+    ++|+.|++.+|..++.+|..+ .+++|+.|++++|..++
T Consensus       770 ~~~~~~~~~sL~~L~Ls~n~~l~~lP~-----si~~L----~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~  839 (1153)
T PLN03210        770 TPLMTMLSPSLTRLFLSDIPSLVELPS-----SIQNL----HKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLR  839 (1153)
T ss_pred             chhhhhccccchheeCCCCCCccccCh-----hhhCC----CCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccc
Confidence            111123457899999999888887765     46666    899999999999999888766 78999999999999888


Q ss_pred             ecCCCCcCCCceEEEeccCCCCCccccccccCCCCCcceEecccCcccccccCC-CCCCCccEEeecCCcccccccc
Q 043667          303 SFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGV-QLPPSLKRLDIWNCDNIRTLTV  378 (387)
Q Consensus       303 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~C~~l~~l~~  378 (387)
                      .++.  .+++|+.|++++ +.++.+|..+..+++  |+.|++.+|++++.++.. ..+++|+.+++++|++|+.++.
T Consensus       840 ~~p~--~~~nL~~L~Ls~-n~i~~iP~si~~l~~--L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l  911 (1153)
T PLN03210        840 TFPD--ISTNISDLNLSR-TGIEEVPWWIEKFSN--LSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASW  911 (1153)
T ss_pred             cccc--cccccCEeECCC-CCCccChHHHhcCCC--CCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccC
Confidence            8774  347899999988 468899988777888  999999999999998876 5678899999999999987753

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.91  E-value=5.2e-23  Score=215.95  Aligned_cols=324  Identities=22%  Similarity=0.299  Sum_probs=243.8

Q ss_pred             CCCccEEEeecCC--C----CCCCCC-cCCcC-CCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccc
Q 043667           30 FSNLVTLKFEYCG--M----CPTLPS-VGQLP-SLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWI  101 (387)
Q Consensus        30 l~~L~~L~l~~c~--~----~~~l~~-~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  101 (387)
                      +++|+.|.+....  .    ...+|. +..++ +|+.|.+.++ .++.+|..+       .+.+|++|++.++. +...+
T Consensus       557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f-------~~~~L~~L~L~~s~-l~~L~  627 (1153)
T PLN03210        557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNF-------RPENLVKLQMQGSK-LEKLW  627 (1153)
T ss_pred             CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcC-------CccCCcEEECcCcc-ccccc
Confidence            8999999996531  1    113443 45554 6999999998 677777654       36899999999753 44332


Q ss_pred             cCcCCCCccCCCCcceEeeccCcccccccCC--CCCCccEEEeccCccc---cccccCCCCcceEEEcCccceeEecccc
Q 043667          102 PLRSGQGVEGFPKLRELHILRCSKLQGTFPE--HLPALEMLVIEACKEL---SVSVSSLPALCKLKIGGCKKVVWRSATD  176 (387)
Q Consensus       102 ~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~--~~~~L~~L~l~~~~~l---~~~~~~~~~L~~L~i~~~~~~~~~~~~~  176 (387)
                           .++..+++|+.++++++..+. .+|.  .+++|+.|++.+|..+   +..+..+++|+.|++++|..++......
T Consensus       628 -----~~~~~l~~Lk~L~Ls~~~~l~-~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i  701 (1153)
T PLN03210        628 -----DGVHSLTGLRNIDLRGSKNLK-EIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI  701 (1153)
T ss_pred             -----cccccCCCCCEEECCCCCCcC-cCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC
Confidence                 445568999999999886665 5664  3789999999998754   4667889999999999998777332223


Q ss_pred             cCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHH
Q 043667          177 HLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQ  256 (387)
Q Consensus       177 ~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  256 (387)
                      .+++|+.|++++|..+..++..    .++|+.  +.+.++. ++.+|..+  .+++|++|.+.++... .++..... ..
T Consensus       702 ~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~--L~L~~n~-i~~lP~~~--~l~~L~~L~l~~~~~~-~l~~~~~~-l~  770 (1153)
T PLN03210        702 NLKSLYRLNLSGCSRLKSFPDI----STNISW--LDLDETA-IEEFPSNL--RLENLDELILCEMKSE-KLWERVQP-LT  770 (1153)
T ss_pred             CCCCCCEEeCCCCCCccccccc----cCCcCe--eecCCCc-cccccccc--cccccccccccccchh-hccccccc-cc
Confidence            6889999999999887776543    456677  8887654 66777652  5788999998875421 11110000 00


Q ss_pred             hhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCCCccccccccCCC
Q 043667          257 QQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTN  336 (387)
Q Consensus       257 ~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~  336 (387)
                      ......+++|++|++++|+.+..+|..++.+++|+.|++++|.+++.+|.....++|+.|++++|..++.+|..   ..+
T Consensus       771 ~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~n  847 (1153)
T PLN03210        771 PLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STN  847 (1153)
T ss_pred             hhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccc
Confidence            00011247999999999999999999999999999999999999999997765699999999999999998875   456


Q ss_pred             CCcceEecccCcccccccCC-CCCCCccEEeecCCccccccccccc-cccC
Q 043667          337 SSLETLKIERCRSLTYIAGV-QLPPSLKRLDIWNCDNIRTLTVEEG-VQSS  385 (387)
Q Consensus       337 ~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~C~~l~~l~~~~~-~~~~  385 (387)
                        |+.|++++ +.++.+|.. ..+++|++|++++|++++.+|...+ ++.+
T Consensus       848 --L~~L~Ls~-n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L  895 (1153)
T PLN03210        848 --ISDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHL  895 (1153)
T ss_pred             --cCEeECCC-CCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCC
Confidence              99999999 589998877 7789999999999999999997653 4443

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.91  E-value=1.7e-23  Score=218.74  Aligned_cols=352  Identities=16%  Similarity=0.130  Sum_probs=173.7

Q ss_pred             CCCCCCCcEEEEcCcCCC-CCCCccCCccCCCccEEEeecCCCCCCCCC-cCCcCCCcEEEecCCCCceEeCccccCCCc
Q 043667            2 LEPHKNLEQFCISGYRGA-KFPTWFGDSSFSNLVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGKGA   79 (387)
Q Consensus         2 ~~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~   79 (387)
                      +...++|++|+++++... .+|.+++.  +++|++|++++|.....+|. ++++++|++|++.++.....++..      
T Consensus       160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~------  231 (968)
T PLN00113        160 IGSFSSLKVLDLGGNVLVGKIPNSLTN--LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE------  231 (968)
T ss_pred             HhcCCCCCEEECccCcccccCChhhhh--CcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh------
Confidence            345678999999988754 56887776  88899999988755555664 778888888888877433333333      


Q ss_pred             ccCCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCC---CCCccEEEeccCc---ccccccc
Q 043667           80 AIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEH---LPALEMLVIEACK---ELSVSVS  153 (387)
Q Consensus        80 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~---~~~L~~L~l~~~~---~l~~~~~  153 (387)
                      +..+++|++|++.++.- .+..+    ..+..+++|+.|+++++ .+.+.+|..   +++|+.|++++|.   .++..+.
T Consensus       232 l~~l~~L~~L~L~~n~l-~~~~p----~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~  305 (968)
T PLN00113        232 IGGLTSLNHLDLVYNNL-TGPIP----SSLGNLKNLQYLFLYQN-KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI  305 (968)
T ss_pred             HhcCCCCCEEECcCcee-ccccC----hhHhCCCCCCEEECcCC-eeeccCchhHhhccCcCEEECcCCeeccCCChhHc
Confidence            23466777777765432 11111    22334555666665554 222233322   3455555555443   1222334


Q ss_pred             CCCCcceEEEcCcccee-EecccccCCCCcEEeccCCCCcccccCCCCCCCcccccee----------------------
Q 043667          154 SLPALCKLKIGGCKKVV-WRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELI----------------------  210 (387)
Q Consensus       154 ~~~~L~~L~i~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~----------------------  210 (387)
                      .+++|+.|++.++.... .+..+..+++|+.|+++++.-...++.. ...+++|+.|.                      
T Consensus       306 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~  384 (968)
T PLN00113        306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN-LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFK  384 (968)
T ss_pred             CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH-HhCCCCCcEEECCCCeeEeeCChhHhCcCCCCE
Confidence            44455555554443222 2223333444444444443222111111 12222333300                      


Q ss_pred             EEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCc
Q 043667          211 LSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSL  290 (387)
Q Consensus       211 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L  290 (387)
                      +.+..+.....+|.. ++.+++|+.|++.+|.....++.     .+..+    ++|+.|+++++.-...++..+..+++|
T Consensus       385 L~l~~n~l~~~~p~~-~~~~~~L~~L~L~~n~l~~~~p~-----~~~~l----~~L~~L~Ls~N~l~~~~~~~~~~l~~L  454 (968)
T PLN00113        385 LILFSNSLEGEIPKS-LGACRSLRRVRLQDNSFSGELPS-----EFTKL----PLVYFLDISNNNLQGRINSRKWDMPSL  454 (968)
T ss_pred             EECcCCEecccCCHH-HhCCCCCCEEECcCCEeeeECCh-----hHhcC----CCCCEEECcCCcccCccChhhccCCCC
Confidence            333333222222222 33455556666555433222222     23333    445555554433222223233334444


Q ss_pred             cEEEecCCCCceecCCC----------------------Cc--CCCceEEEeccCCCCCccccccccCCCCCcceEeccc
Q 043667          291 REIDIYDCSSLVSFPEV----------------------AL--PSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIER  346 (387)
Q Consensus       291 ~~L~l~~c~~l~~~~~~----------------------~~--~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~  346 (387)
                      +.|++++|.-...++..                      .+  .++|+.|++++|.....+|..+..+.+  |++|++++
T Consensus       455 ~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~--L~~L~Ls~  532 (968)
T PLN00113        455 QMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKK--LVSLDLSH  532 (968)
T ss_pred             cEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccC--CCEEECCC
Confidence            44444443222222211                      11  156666666665544455655555566  77777777


Q ss_pred             CcccccccCC-CCCCCccEEeecCCcccccccccc
Q 043667          347 CRSLTYIAGV-QLPPSLKRLDIWNCDNIRTLTVEE  380 (387)
Q Consensus       347 c~~l~~~~~~-~~~~~L~~L~l~~C~~l~~l~~~~  380 (387)
                      |.-...+|.. ..+++|++|++++|.....+|...
T Consensus       533 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  567 (968)
T PLN00113        533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL  567 (968)
T ss_pred             CcccccCChhHhCcccCCEEECCCCcccccCChhH
Confidence            5322233333 455778888888776655677544

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.91  E-value=4.3e-23  Score=215.66  Aligned_cols=353  Identities=17%  Similarity=0.146  Sum_probs=165.3

Q ss_pred             CCCCCcEEEEcCcCCCC-CCCccCCccCCCccEEEeecCCCCCCCCC-cCCcCCCcEEEecCCCCceEeCccccCCCccc
Q 043667            4 PHKNLEQFCISGYRGAK-FPTWFGDSSFSNLVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAI   81 (387)
Q Consensus         4 ~~~~L~~L~l~~~~~~~-~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~   81 (387)
                      .+.+||+|+++++.... +|.  +  .+++|++|++++|.....+|. ++.+++|++|++.++.....++..      +.
T Consensus       116 ~l~~L~~L~Ls~n~l~~~~p~--~--~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~------~~  185 (968)
T PLN00113        116 TSSSLRYLNLSNNNFTGSIPR--G--SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS------LT  185 (968)
T ss_pred             cCCCCCEEECcCCccccccCc--c--ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh------hh
Confidence            45677777777666542 332  1  266677777766533334443 666677777777666322233332      23


Q ss_pred             CCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCC---CCCCccEEEeccCc---cccccccCC
Q 043667           82 PFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPE---HLPALEMLVIEACK---ELSVSVSSL  155 (387)
Q Consensus        82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~---~~~~L~~L~l~~~~---~l~~~~~~~  155 (387)
                      .+++|++|++.++.-. ...+    ..+..+++|+.|+++++ .+.+.+|.   .+++|+.|+++++.   .++..++.+
T Consensus       186 ~l~~L~~L~L~~n~l~-~~~p----~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  259 (968)
T PLN00113        186 NLTSLEFLTLASNQLV-GQIP----RELGQMKSLKWIYLGYN-NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL  259 (968)
T ss_pred             hCcCCCeeeccCCCCc-CcCC----hHHcCcCCccEEECcCC-ccCCcCChhHhcCCCCCEEECcCceeccccChhHhCC
Confidence            4556666666554321 1111    22233455555555544 22223332   23445555554443   122334444


Q ss_pred             CCc------------------------ceEEEcCcccee-EecccccCCCCcEEeccCCCCcccccCCCCCCCcccccee
Q 043667          156 PAL------------------------CKLKIGGCKKVV-WRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELI  210 (387)
Q Consensus       156 ~~L------------------------~~L~i~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~  210 (387)
                      ++|                        ++|+++++.... .+..+..+++|+.|++.++......+.. ...+++|+.  
T Consensus       260 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~--  336 (968)
T PLN00113        260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA-LTSLPRLQV--  336 (968)
T ss_pred             CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh-HhcCCCCCE--
Confidence            444                        444444433221 2233334455555555444322222211 334455555  


Q ss_pred             EEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhh--------------------hhccCCccEEE
Q 043667          211 LSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQL--------------------CELSCRLEYLR  270 (387)
Q Consensus       211 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l--------------------~~~~~~L~~L~  270 (387)
                      +.++++.....+|.. ++.+++|+.|+++++.-...++.     ++..+                    ...+++|+.|+
T Consensus       337 L~L~~n~l~~~~p~~-l~~~~~L~~L~Ls~n~l~~~~p~-----~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~  410 (968)
T PLN00113        337 LQLWSNKFSGEIPKN-LGKHNNLTVLDLSTNNLTGEIPE-----GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVR  410 (968)
T ss_pred             EECcCCCCcCcCChH-HhCCCCCcEEECCCCeeEeeCCh-----hHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEE
Confidence            555555433334433 44556666666665432222221     11111                    00113444444


Q ss_pred             eccCCCCCCcccccCCCCCccEEEecCCCCceecCCCC--cCCCceEEEeccCCCCCccccccccCCCCCcceEecccCc
Q 043667          271 LRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVA--LPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCR  348 (387)
Q Consensus       271 l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~--~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~  348 (387)
                      +.+|.....+|..+..+++|+.|+++++ .+.......  ..++|+.|++++|.....+|..+ ...+  |+.|++++|.
T Consensus       411 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~--L~~L~ls~n~  486 (968)
T PLN00113        411 LQDNSFSGELPSEFTKLPLVYFLDISNN-NLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKR--LENLDLSRNQ  486 (968)
T ss_pred             CcCCEeeeECChhHhcCCCCCEEECcCC-cccCccChhhccCCCCcEEECcCceeeeecCccc-cccc--ceEEECcCCc
Confidence            4443322233333444455555555442 222211111  12566667766665444555432 1234  7777877763


Q ss_pred             ccccccCC-CCCCCccEEeecCCccccccccccc-cccC
Q 043667          349 SLTYIAGV-QLPPSLKRLDIWNCDNIRTLTVEEG-VQSS  385 (387)
Q Consensus       349 ~l~~~~~~-~~~~~L~~L~l~~C~~l~~l~~~~~-~~~~  385 (387)
                      --..++.. ..+++|++|++++|.-...+|..++ ++.|
T Consensus       487 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  525 (968)
T PLN00113        487 FSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKL  525 (968)
T ss_pred             cCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCC
Confidence            32334433 4567888888888765556765543 4443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.75  E-value=7.6e-19  Score=161.28  Aligned_cols=79  Identities=16%  Similarity=0.251  Sum_probs=46.5

Q ss_pred             CCCcEEEEcCcCCCCC-CCccCCccCCCccEEEeecCCCCCCCCCcCCc-CCCcEEEecCCCCceEeCccccCCCcccCC
Q 043667            6 KNLEQFCISGYRGAKF-PTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQL-PSLKHLAVCGMTSVKRLGSEFYGKGAAIPF   83 (387)
Q Consensus         6 ~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~   83 (387)
                      +.-+.|+++++....+ +..+-+  ++||+.+++.+ +.++.+|.++.. .+|+.|++.++ .+..+..+.     +..+
T Consensus        78 ~~t~~LdlsnNkl~~id~~~f~n--l~nLq~v~l~~-N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~-----L~~l  148 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLSHIDFEFFYN--LPNLQEVNLNK-NELTRIPRFGHESGHLEKLDLRHN-LISSVTSEE-----LSAL  148 (873)
T ss_pred             cceeeeeccccccccCcHHHHhc--CCcceeeeecc-chhhhcccccccccceeEEeeecc-ccccccHHH-----HHhH
Confidence            3445677777766554 444444  77777777776 377777765553 44777777766 444443322     3345


Q ss_pred             CCcceeeccc
Q 043667           84 PRLETLRFDA   93 (387)
Q Consensus        84 ~~L~~L~l~~   93 (387)
                      +.|++|+++.
T Consensus       149 ~alrslDLSr  158 (873)
T KOG4194|consen  149 PALRSLDLSR  158 (873)
T ss_pred             hhhhhhhhhh
Confidence            5666666553

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.75  E-value=6.3e-19  Score=161.84  Aligned_cols=142  Identities=17%  Similarity=0.193  Sum_probs=66.9

Q ss_pred             CccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCc
Q 043667           32 NLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGV  109 (387)
Q Consensus        32 ~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i  109 (387)
                      .-++|+++++ ++.+...  +-+++||+.+.+.++ .++.||.-      .....+|+.|++.+.. +.....    ..+
T Consensus        79 ~t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f------~~~sghl~~L~L~~N~-I~sv~s----e~L  145 (873)
T KOG4194|consen   79 QTQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRF------GHESGHLEKLDLRHNL-ISSVTS----EEL  145 (873)
T ss_pred             ceeeeecccc-ccccCcHHHHhcCCcceeeeeccc-hhhhcccc------cccccceeEEeeeccc-cccccH----HHH
Confidence            4455666663 5544442  556666666666666 55555542      1223456666665421 111111    222


Q ss_pred             cCCCCcceEeeccCcccccccCCC-C---CCccEEEeccCcccc---ccccCCCCcceEEEcCccceeEe-cccccCCCC
Q 043667          110 EGFPKLRELHILRCSKLQGTFPEH-L---PALEMLVIEACKELS---VSVSSLPALCKLKIGGCKKVVWR-SATDHLGSQ  181 (387)
Q Consensus       110 ~~~~~L~~L~l~~~~~l~~~~~~~-~---~~L~~L~l~~~~~l~---~~~~~~~~L~~L~i~~~~~~~~~-~~~~~~~~L  181 (387)
                      ..++.|+.|+++.+. +. ++|.. +   .++++|++.+...-.   ..+..+.+|..|.++.+...+.+ ..++.+++|
T Consensus       146 ~~l~alrslDLSrN~-is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L  223 (873)
T KOG4194|consen  146 SALPALRSLDLSRNL-IS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKL  223 (873)
T ss_pred             HhHhhhhhhhhhhch-hh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchh
Confidence            245666666666542 21 23321 2   246666665543211   33444455555555554333322 223345555


Q ss_pred             cEEeccC
Q 043667          182 NSVVCRD  188 (387)
Q Consensus       182 ~~L~l~~  188 (387)
                      +.|++..
T Consensus       224 ~~LdLnr  230 (873)
T KOG4194|consen  224 ESLDLNR  230 (873)
T ss_pred             hhhhccc
Confidence            5555543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.70  E-value=4e-19  Score=164.47  Aligned_cols=335  Identities=18%  Similarity=0.249  Sum_probs=199.1

Q ss_pred             CCCCcEEEEcCcC--CCCCCCccCCccCCCccEEEeecCCCCCCCCC-cCCcCCCcEEEecCCCCceEeCccccCCCccc
Q 043667            5 HKNLEQFCISGYR--GAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAI   81 (387)
Q Consensus         5 ~~~L~~L~l~~~~--~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~   81 (387)
                      .+=.|-.+++|+.  +..+|+.+..  ++.++-|.+.. ..+..+|. ++.+.+|++|.+.++ .+..+-.+      +.
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~q--Mt~~~WLkLnr-t~L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGE------Ls   75 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQ--MTQMTWLKLNR-TKLEQVPEELSRLQKLEHLSMAHN-QLISVHGE------LS   75 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHH--hhheeEEEech-hhhhhChHHHHHHhhhhhhhhhhh-hhHhhhhh------hc
Confidence            4456778888775  4578998876  99999999988 58889996 999999999999998 55544332      45


Q ss_pred             CCCCcceeeccccCCcccc-ccCcCCCCccCCCCcceEeeccCcccccccCCCC---CCccEEEeccCc--ccc-ccccC
Q 043667           82 PFPRLETLRFDAMLGWEDW-IPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHL---PALEMLVIEACK--ELS-VSVSS  154 (387)
Q Consensus        82 ~~~~L~~L~l~~~~~l~~~-~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~~---~~L~~L~l~~~~--~l~-~~~~~  154 (387)
                      .+|.|+.+.+.+. +++.. .+    ..|-.+..|..|+++.+ +++ +.|..+   .++-.|++++..  .++ ..+.+
T Consensus        76 ~Lp~LRsv~~R~N-~LKnsGiP----~diF~l~dLt~lDLShN-qL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfin  148 (1255)
T KOG0444|consen   76 DLPRLRSVIVRDN-NLKNSGIP----TDIFRLKDLTILDLSHN-QLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFIN  148 (1255)
T ss_pred             cchhhHHHhhhcc-ccccCCCC----chhcccccceeeecchh-hhh-hcchhhhhhcCcEEEEcccCccccCCchHHHh
Confidence            7888888887753 22221 11    33335777888888775 565 566554   355666666543  222 23445


Q ss_pred             CCCcceEEEcCccceeEecccccCCCCcEEeccCCCCcc-cccCCCCCCCccccceeEEEcCCCC-cccccccccccCCC
Q 043667          155 LPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQV-FLAGPLKPQLPKLEELILSTKEQTY-IWKSHDGLLQDICS  232 (387)
Q Consensus       155 ~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~l~~L~~l~L~l~~~~~-~~~~~~~~l~~~~~  232 (387)
                      ++.|-.|+++.+..-..+.-+..+.+|++|.+++.+-.. .+..  .++++.|+.  +++++... +..+|.. +..+.+
T Consensus       149 LtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ--LPsmtsL~v--Lhms~TqRTl~N~Pts-ld~l~N  223 (1255)
T KOG0444|consen  149 LTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ--LPSMTSLSV--LHMSNTQRTLDNIPTS-LDDLHN  223 (1255)
T ss_pred             hHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc--Cccchhhhh--hhcccccchhhcCCCc-hhhhhh
Confidence            566666666665544455555556666666666543211 0000  233444444  55554332 2344544 344555


Q ss_pred             ccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCC-----
Q 043667          233 LKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEV-----  307 (387)
Q Consensus       233 L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-----  307 (387)
                      |..++++. +++..+|+.     +=.+    ++|++|++++ +.++++..+...+.+|++|+++. +.++.+|..     
T Consensus       224 L~dvDlS~-N~Lp~vPec-----ly~l----~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~  291 (1255)
T KOG0444|consen  224 LRDVDLSE-NNLPIVPEC-----LYKL----RNLRRLNLSG-NKITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKLT  291 (1255)
T ss_pred             hhhccccc-cCCCcchHH-----Hhhh----hhhheeccCc-CceeeeeccHHHHhhhhhhcccc-chhccchHHHhhhH
Confidence            55555553 344444332     2222    4555555554 23444444444444445555444 334433322     


Q ss_pred             ---------------Cc------CCCceEEEeccCCCCCccccccccCCCCCcceEecccCcccccccCC-CCCCCccEE
Q 043667          308 ---------------AL------PSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGV-QLPPSLKRL  365 (387)
Q Consensus       308 ---------------~~------~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L  365 (387)
                                     ++      ...|+++...+ ++++-+|+++..|..  |+.|.+.+ +.+..+|.. ..++-|+.|
T Consensus       292 kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~k--L~kL~L~~-NrLiTLPeaIHlL~~l~vL  367 (1255)
T KOG0444|consen  292 KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVK--LQKLKLDH-NRLITLPEAIHLLPDLKVL  367 (1255)
T ss_pred             HHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHH--HHHhcccc-cceeechhhhhhcCCccee
Confidence                           11      14555655554 557777887777777  88888866 577778877 667888899


Q ss_pred             eecCCccccccc
Q 043667          366 DIWNCDNIRTLT  377 (387)
Q Consensus       366 ~l~~C~~l~~l~  377 (387)
                      |+.+.|+|--=|
T Consensus       368 DlreNpnLVMPP  379 (1255)
T KOG0444|consen  368 DLRENPNLVMPP  379 (1255)
T ss_pred             eccCCcCccCCC
Confidence            998888875443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.59  E-value=3.5e-17  Score=151.78  Aligned_cols=310  Identities=17%  Similarity=0.172  Sum_probs=176.8

Q ss_pred             CCCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCC--CCCCC-cCCcCCCcEEEecCCCCceEeCccccCCCccc
Q 043667            5 HKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMC--PTLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAI   81 (387)
Q Consensus         5 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~--~~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~   81 (387)
                      +.+|+||.+..+...++...+.+  ++.|+.+.++.+ .+  ..+|+ |-++..|..|+++++ .++.+|...      .
T Consensus        54 lqkLEHLs~~HN~L~~vhGELs~--Lp~LRsv~~R~N-~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~L------E  123 (1255)
T KOG0444|consen   54 LQKLEHLSMAHNQLISVHGELSD--LPRLRSVIVRDN-NLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNL------E  123 (1255)
T ss_pred             HhhhhhhhhhhhhhHhhhhhhcc--chhhHHHhhhcc-ccccCCCCchhcccccceeeecchh-hhhhcchhh------h
Confidence            34566666665555554444444  666666666553 22  23443 566666666666666 555555431      1


Q ss_pred             CCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCC---CCCccEEEeccCccccccccCC---
Q 043667           82 PFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEH---LPALEMLVIEACKELSVSVSSL---  155 (387)
Q Consensus        82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~---~~~L~~L~l~~~~~l~~~~~~~---  155 (387)
                      .-.++-.|++++. +++....    .-...+..|-.|+++++ .+. .+|..   +.+|+.|++++.+-....+..+   
T Consensus       124 ~AKn~iVLNLS~N-~IetIPn----~lfinLtDLLfLDLS~N-rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsm  196 (1255)
T KOG0444|consen  124 YAKNSIVLNLSYN-NIETIPN----SLFINLTDLLFLDLSNN-RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSM  196 (1255)
T ss_pred             hhcCcEEEEcccC-ccccCCc----hHHHhhHhHhhhccccc-hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccc
Confidence            2234444555541 1111110    00012444455555554 333 34432   3455666666655333223333   


Q ss_pred             CCcceEEEcCcccee--EecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCc
Q 043667          156 PALCKLKIGGCKKVV--WRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSL  233 (387)
Q Consensus       156 ~~L~~L~i~~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L  233 (387)
                      ++|+.|.+++.....  ++..+..+.+|..++++. .++...|.- .-.+++|+.  +.+++. .++.+... .+...+|
T Consensus       197 tsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPec-ly~l~~Lrr--LNLS~N-~iteL~~~-~~~W~~l  270 (1255)
T KOG0444|consen  197 TSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPEC-LYKLRNLRR--LNLSGN-KITELNMT-EGEWENL  270 (1255)
T ss_pred             hhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHH-Hhhhhhhhe--eccCcC-ceeeeecc-HHHHhhh
Confidence            334444444433221  444555566666666663 233322221 223344444  666553 34444444 3456788


Q ss_pred             cEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCC-CCCCcccccCCCCCccEEEecCCCCceecCCCCcC-C
Q 043667          234 KKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCK-GLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALP-S  311 (387)
Q Consensus       234 ~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~-~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~-~  311 (387)
                      ++|+++. +.+..+|.     .+.++    ++|++|.+.++. ..+.+|.+++.+.+|+.+...+ +++.-+|++... +
T Consensus       271 EtLNlSr-NQLt~LP~-----avcKL----~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~  339 (1255)
T KOG0444|consen  271 ETLNLSR-NQLTVLPD-----AVCKL----TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCV  339 (1255)
T ss_pred             hhhcccc-chhccchH-----HHhhh----HHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhH
Confidence            9999987 46666655     46667    888888886643 2356888888888888888876 677777765544 7


Q ss_pred             CceEEEeccCCCCCccccccccCCCCCcceEecccCcccc
Q 043667          312 KLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLT  351 (387)
Q Consensus       312 ~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~  351 (387)
                      .|+.|.++ |+.+-.+|+.++-++.  |+.|++...+++.
T Consensus       340 kL~kL~L~-~NrLiTLPeaIHlL~~--l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  340 KLQKLKLD-HNRLITLPEAIHLLPD--LKVLDLRENPNLV  376 (1255)
T ss_pred             HHHHhccc-ccceeechhhhhhcCC--cceeeccCCcCcc
Confidence            88888886 5678889988888888  9999999888874

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.53  E-value=2.3e-16  Score=152.19  Aligned_cols=346  Identities=18%  Similarity=0.147  Sum_probs=172.2

Q ss_pred             CCCCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCC-CcCCcCCCcEEEecCCCCceEeCccccCCCc---
Q 043667            4 PHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLP-SVGQLPSLKHLAVCGMTSVKRLGSEFYGKGA---   79 (387)
Q Consensus         4 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~---   79 (387)
                      ...+|+.|.++.+-+.+.|.....  +++|+++.|.+ ..+..+| .+..+++|++|+++++ ....+|........   
T Consensus        66 ~l~~L~~ln~s~n~i~~vp~s~~~--~~~l~~lnL~~-n~l~~lP~~~~~lknl~~LdlS~N-~f~~~Pl~i~~lt~~~~  141 (1081)
T KOG0618|consen   66 LLSHLRQLNLSRNYIRSVPSSCSN--MRNLQYLNLKN-NRLQSLPASISELKNLQYLDLSFN-HFGPIPLVIEVLTAEEE  141 (1081)
T ss_pred             hHHHHhhcccchhhHhhCchhhhh--hhcchhheecc-chhhcCchhHHhhhcccccccchh-ccCCCchhHHhhhHHHH
Confidence            346788888888888888876665  88899998876 4777888 4888888888888877 44444432111000   


Q ss_pred             --------ccCC--CCcceeeccccCCccccccCcCCCCccCCCCcce-EeeccC----------ccccc---------c
Q 043667           80 --------AIPF--PRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRE-LHILRC----------SKLQG---------T  129 (387)
Q Consensus        80 --------~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~-L~l~~~----------~~l~~---------~  129 (387)
                              ...+  ...+.+++........+ .    .++   .++++ ++++++          .++..         .
T Consensus       142 ~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~-~----~~i---~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~  213 (1081)
T KOG0618|consen  142 LAASNNEKIQRLGQTSIKKLDLRLNVLGGSF-L----IDI---YNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSE  213 (1081)
T ss_pred             Hhhhcchhhhhhccccchhhhhhhhhcccch-h----cch---hhhheeeecccchhhhhhhhhccchhhhhhhhcccce
Confidence                    0000  01222222211100000 0    111   11222 333322          22210         1


Q ss_pred             cCCCCCCccEEEeccCccccccc-cCCCCcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccc
Q 043667          130 FPEHLPALEMLVIEACKELSVSV-SSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEE  208 (387)
Q Consensus       130 ~~~~~~~L~~L~l~~~~~l~~~~-~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~  208 (387)
                      +--.-++|+.|+..++.-..... ..-.+|++++++......++.++..+++|+.+...... +..++.. .....+|+.
T Consensus       214 l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~-l~~lp~r-i~~~~~L~~  291 (1081)
T KOG0618|consen  214 LEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNR-LVALPLR-ISRITSLVS  291 (1081)
T ss_pred             EEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchh-HHhhHHH-HhhhhhHHH
Confidence            11113455556555555332111 22246788888877666677778888888888776532 2222222 223344444


Q ss_pred             eeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHH---HHhhhhh--------------ccCCccEEEe
Q 043667          209 LILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKD---QQQQLCE--------------LSCRLEYLRL  271 (387)
Q Consensus       209 l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~---~~~~l~~--------------~~~~L~~L~l  271 (387)
                        +.+..+ .++.+|.. .+.+.+|++|++.. +++.++|+..+..   ++..+-.              ..+.|+.|.+
T Consensus       292 --l~~~~n-el~yip~~-le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyl  366 (1081)
T KOG0618|consen  292 --LSAAYN-ELEYIPPF-LEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYL  366 (1081)
T ss_pred             --HHhhhh-hhhhCCCc-ccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHH
Confidence              333322 23334433 34466677777765 3555555422110   0000000              2234444444


Q ss_pred             ccCCCCCC-cccccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCccccccccCCC------------
Q 043667          272 RYCKGLVK-LPQSSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPEAWMCDTN------------  336 (387)
Q Consensus       272 ~~c~~l~~-~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~~~~~~~~------------  336 (387)
                      .++ .+++ ..+.+..+.+|+.|++++ +.+..||...+.  +.|++|+++| ++++.+|..+..+..            
T Consensus       367 anN-~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~  443 (1081)
T KOG0618|consen  367 ANN-HLTDSCFPVLVNFKHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQLL  443 (1081)
T ss_pred             hcC-cccccchhhhccccceeeeeecc-cccccCCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCCcee
Confidence            442 2322 222344556666666665 455555544333  5556666655 345555533332322            


Q ss_pred             --------CCcceEecccCcccccccCC-CCC-CCccEEeecCCcc
Q 043667          337 --------SSLETLKIERCRSLTYIAGV-QLP-PSLKRLDIWNCDN  372 (387)
Q Consensus       337 --------~~L~~L~l~~c~~l~~~~~~-~~~-~~L~~L~l~~C~~  372 (387)
                              ++|+.+|++. ++++.+... ..+ ++|++||++|.++
T Consensus       444 ~fPe~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  444 SFPELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             echhhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence                    4477777765 566665544 344 6777777776553

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.53  E-value=8e-17  Score=141.99  Aligned_cols=112  Identities=20%  Similarity=0.227  Sum_probs=73.6

Q ss_pred             ccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcC-CCceEEEeccCCCCCcccc-ccccCCCCCc
Q 043667          262 LSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALP-SKLKKIEIRKCDALKSLPE-AWMCDTNSSL  339 (387)
Q Consensus       262 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~-~~L~~L~l~~c~~l~~l~~-~~~~~~~~~L  339 (387)
                      .+++|..|++++ +.+.++|..++.+-+|+.|+++. ++++.+|....- ..++.+-. ..+.++.++. ++..+.+  |
T Consensus       433 ~l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~-NrFr~lP~~~y~lq~lEtlla-s~nqi~~vd~~~l~nm~n--L  507 (565)
T KOG0472|consen  433 QLQKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSF-NRFRMLPECLYELQTLETLLA-SNNQIGSVDPSGLKNMRN--L  507 (565)
T ss_pred             hhhcceeeeccc-chhhhcchhhhhhhhhheecccc-cccccchHHHhhHHHHHHHHh-ccccccccChHHhhhhhh--c
Confidence            346777777765 34666776666666677777776 455555533222 23333333 3355666664 3666677  9


Q ss_pred             ceEecccCcccccccCC-CCCCCccEEeecCCccccccccccc
Q 043667          340 ETLKIERCRSLTYIAGV-QLPPSLKRLDIWNCDNIRTLTVEEG  381 (387)
Q Consensus       340 ~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~C~~l~~l~~~~~  381 (387)
                      .+|++.+ +.+..+|.. +...+|+.|++.|. .++ .|-..+
T Consensus       508 ~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gN-pfr-~Pr~~i  547 (565)
T KOG0472|consen  508 TTLDLQN-NDLQQIPPILGNMTNLRHLELDGN-PFR-QPRHQI  547 (565)
T ss_pred             ceeccCC-CchhhCChhhccccceeEEEecCC-ccC-CCHHHH
Confidence            9999988 689999988 88999999999994 456 664443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.51  E-value=2.9e-13  Score=133.91  Aligned_cols=257  Identities=22%  Similarity=0.212  Sum_probs=152.3

Q ss_pred             CCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCc
Q 043667            7 NLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRL   86 (387)
Q Consensus         7 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L   86 (387)
                      +-..|+++++...++|..+.    ++|+.|++.++ .++.+|..  .++|++|++.++ .++.++.         .+++|
T Consensus       202 ~~~~LdLs~~~LtsLP~~l~----~~L~~L~L~~N-~Lt~LP~l--p~~Lk~LdLs~N-~LtsLP~---------lp~sL  264 (788)
T PRK15387        202 GNAVLNVGESGLTTLPDCLP----AHITTLVIPDN-NLTSLPAL--PPELRTLEVSGN-QLTSLPV---------LPPGL  264 (788)
T ss_pred             CCcEEEcCCCCCCcCCcchh----cCCCEEEccCC-cCCCCCCC--CCCCcEEEecCC-ccCcccC---------ccccc
Confidence            34567788777777787553    36888888874 67777753  578888888877 6666653         14567


Q ss_pred             ceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCCCCCccEEEeccCccccccccCCCCcceEEEcCc
Q 043667           87 ETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIGGC  166 (387)
Q Consensus        87 ~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~i~~~  166 (387)
                      ++|++.++. +.....        .+.+|+.|+++++ .++ .+|..+++|+.|+++++.                    
T Consensus       265 ~~L~Ls~N~-L~~Lp~--------lp~~L~~L~Ls~N-~Lt-~LP~~p~~L~~LdLS~N~--------------------  313 (788)
T PRK15387        265 LELSIFSNP-LTHLPA--------LPSGLCKLWIFGN-QLT-SLPVLPPGLQELSVSDNQ--------------------  313 (788)
T ss_pred             ceeeccCCc-hhhhhh--------chhhcCEEECcCC-ccc-cccccccccceeECCCCc--------------------
Confidence            777766532 222211        1345666666665 344 455545556666655542                    


Q ss_pred             cceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCccc
Q 043667          167 KKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQS  246 (387)
Q Consensus       167 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~  246 (387)
                       ...++.   ..++|+.|.+.++ .+..++.. +   ..|+.  |.++++ .+..+|..    .++|+.|++++ +.+..
T Consensus       314 -L~~Lp~---lp~~L~~L~Ls~N-~L~~LP~l-p---~~Lq~--LdLS~N-~Ls~LP~l----p~~L~~L~Ls~-N~L~~  376 (788)
T PRK15387        314 -LASLPA---LPSELCKLWAYNN-QLTSLPTL-P---SGLQE--LSVSDN-QLASLPTL----PSELYKLWAYN-NRLTS  376 (788)
T ss_pred             -cccCCC---CcccccccccccC-cccccccc-c---cccce--EecCCC-ccCCCCCC----Ccccceehhhc-ccccc
Confidence             111111   0123334444332 11222211 1   23444  555542 34444432    34677777776 34555


Q ss_pred             chhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCCCc
Q 043667          247 LVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKS  326 (387)
Q Consensus       247 ~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~  326 (387)
                      ++..            +.+|+.|+++++ .++.+|..   .++|+.|++++ +.++.+|.  .+.+|+.|++++ +.++.
T Consensus       377 LP~l------------~~~L~~LdLs~N-~Lt~LP~l---~s~L~~LdLS~-N~LssIP~--l~~~L~~L~Ls~-NqLt~  436 (788)
T PRK15387        377 LPAL------------PSGLKELIVSGN-RLTSLPVL---PSELKELMVSG-NRLTSLPM--LPSGLLSLSVYR-NQLTR  436 (788)
T ss_pred             Cccc------------ccccceEEecCC-cccCCCCc---ccCCCEEEccC-CcCCCCCc--chhhhhhhhhcc-Ccccc
Confidence            5431            167888998874 57777753   36788899988 56777773  346788888887 55888


Q ss_pred             cccccccCCCCCcceEecccCcccc
Q 043667          327 LPEAWMCDTNSSLETLKIERCRSLT  351 (387)
Q Consensus       327 l~~~~~~~~~~~L~~L~l~~c~~l~  351 (387)
                      +|..+..+..  |+.|+++++ .++
T Consensus       437 LP~sl~~L~~--L~~LdLs~N-~Ls  458 (788)
T PRK15387        437 LPESLIHLSS--ETTVNLEGN-PLS  458 (788)
T ss_pred             cChHHhhccC--CCeEECCCC-CCC
Confidence            8887777777  899999885 454

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.46  E-value=1.3e-15  Score=147.06  Aligned_cols=332  Identities=17%  Similarity=0.194  Sum_probs=204.6

Q ss_pred             CCCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC-cCCcCCCcEEEecCCCCceEeCccccCCCcccCC
Q 043667            5 HKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPF   83 (387)
Q Consensus         5 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~   83 (387)
                      ..+|+.|+++++....+|..+..  ++.|+.|+++. +.+..+|. ++++.+|++|.+.+. .+...|.++      ..+
T Consensus        44 ~v~L~~l~lsnn~~~~fp~~it~--l~~L~~ln~s~-n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~------~~l  113 (1081)
T KOG0618|consen   44 RVKLKSLDLSNNQISSFPIQITL--LSHLRQLNLSR-NYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPASI------SEL  113 (1081)
T ss_pred             eeeeEEeeccccccccCCchhhh--HHHHhhcccch-hhHhhCchhhhhhhcchhheeccc-hhhcCchhH------Hhh
Confidence            45699999999999999999887  99999999988 47888885 888999999999977 777777653      457


Q ss_pred             CCcceeeccccCCccccccCcCCCCccCCCC-------------------cceEeeccCcccccccCCCCCCccE-EEec
Q 043667           84 PRLETLRFDAMLGWEDWIPLRSGQGVEGFPK-------------------LRELHILRCSKLQGTFPEHLPALEM-LVIE  143 (387)
Q Consensus        84 ~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~-------------------L~~L~l~~~~~l~~~~~~~~~~L~~-L~l~  143 (387)
                      .+|+.|+++... +.....     -+..+..                   ++.+++... .+.+.++.....++. ++++
T Consensus       114 knl~~LdlS~N~-f~~~Pl-----~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n-~l~~~~~~~i~~l~~~ldLr  186 (1081)
T KOG0618|consen  114 KNLQYLDLSFNH-FGPIPL-----VIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLN-VLGGSFLIDIYNLTHQLDLR  186 (1081)
T ss_pred             hcccccccchhc-cCCCch-----hHHhhhHHHHHhhhcchhhhhhccccchhhhhhhh-hcccchhcchhhhheeeecc
Confidence            788888887532 111110     0011111                   333333332 222234443444554 6666


Q ss_pred             cCccccccccCCCCcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCccccc
Q 043667          144 ACKELSVSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSH  223 (387)
Q Consensus       144 ~~~~l~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~  223 (387)
                      ........+..+++|+.+....+....   ....-++++.|....+.-........+..+.+     +.+++ ..+..+|
T Consensus       187 ~N~~~~~dls~~~~l~~l~c~rn~ls~---l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~-----~dis~-n~l~~lp  257 (1081)
T KOG0618|consen  187 YNEMEVLDLSNLANLEVLHCERNQLSE---LEISGPSLTALYADHNPLTTLDVHPVPLNLQY-----LDISH-NNLSNLP  257 (1081)
T ss_pred             cchhhhhhhhhccchhhhhhhhcccce---EEecCcchheeeeccCcceeecccccccccee-----eecch-hhhhcch
Confidence            554444455566666666554432222   11234777788777765543333222333443     66655 3456677


Q ss_pred             ccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCcee
Q 043667          224 DGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVS  303 (387)
Q Consensus       224 ~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~  303 (387)
                       .+...+++|+.++..+ +.+..++.+     +..+    .+|++|.+..| .++.+|+....+.+|++|++.. +++..
T Consensus       258 -~wi~~~~nle~l~~n~-N~l~~lp~r-----i~~~----~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~-N~L~~  324 (1081)
T KOG0618|consen  258 -EWIGACANLEALNANH-NRLVALPLR-----ISRI----TSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQS-NNLPS  324 (1081)
T ss_pred             -HHHHhcccceEecccc-hhHHhhHHH-----Hhhh----hhHHHHHhhhh-hhhhCCCcccccceeeeeeehh-ccccc
Confidence             5677899999999987 455555543     3333    67777777764 4777887777788888888876 56766


Q ss_pred             cCCCCcC---CCceEEEeccCCCCCcc-------------------------ccccccCCCCCcceEecccCcccccccC
Q 043667          304 FPEVALP---SKLKKIEIRKCDALKSL-------------------------PEAWMCDTNSSLETLKIERCRSLTYIAG  355 (387)
Q Consensus       304 ~~~~~~~---~~L~~L~l~~c~~l~~l-------------------------~~~~~~~~~~~L~~L~l~~c~~l~~~~~  355 (387)
                      +|...+.   .+|+.++.+. ..+..+                         ...+.++..  |+.|++++ +.+..||.
T Consensus       325 lp~~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~h--LKVLhLsy-NrL~~fpa  400 (1081)
T KOG0618|consen  325 LPDNFLAVLNASLNTLNVSS-NKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKH--LKVLHLSY-NRLNSFPA  400 (1081)
T ss_pred             cchHHHhhhhHHHHHHhhhh-ccccccccccchhhHHHHHHHHhcCcccccchhhhccccc--eeeeeecc-cccccCCH
Confidence            6543221   2233333322 122221                         122333444  88888888 57777776


Q ss_pred             C--CCCCCccEEeecCCcccccccccc
Q 043667          356 V--QLPPSLKRLDIWNCDNIRTLTVEE  380 (387)
Q Consensus       356 ~--~~~~~L~~L~l~~C~~l~~l~~~~  380 (387)
                      .  ..+..|+.|+++| ++|++||...
T Consensus       401 s~~~kle~LeeL~LSG-NkL~~Lp~tv  426 (1081)
T KOG0618|consen  401 SKLRKLEELEELNLSG-NKLTTLPDTV  426 (1081)
T ss_pred             HHHhchHHhHHHhccc-chhhhhhHHH
Confidence            6  5567778888888 7788887444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.39  E-value=5e-12  Score=125.25  Aligned_cols=234  Identities=20%  Similarity=0.185  Sum_probs=154.4

Q ss_pred             CCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCC
Q 043667            6 KNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPR   85 (387)
Q Consensus         6 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~   85 (387)
                      ++|+.|.+.++....+|..     .++|++|++++| .++.+|..  .++|+.|++.++ .++.++.         .+.+
T Consensus       222 ~~L~~L~L~~N~Lt~LP~l-----p~~Lk~LdLs~N-~LtsLP~l--p~sL~~L~Ls~N-~L~~Lp~---------lp~~  283 (788)
T PRK15387        222 AHITTLVIPDNNLTSLPAL-----PPELRTLEVSGN-QLTSLPVL--PPGLLELSIFSN-PLTHLPA---------LPSG  283 (788)
T ss_pred             cCCCEEEccCCcCCCCCCC-----CCCCcEEEecCC-ccCcccCc--ccccceeeccCC-chhhhhh---------chhh
Confidence            5899999999999998863     578999999985 88888863  579999999988 5666654         2467


Q ss_pred             cceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCCCCCccEEEeccCccccccccCCCCcceEEEcC
Q 043667           86 LETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIGG  165 (387)
Q Consensus        86 L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~i~~  165 (387)
                      |+.|.+.++ .+.....        .+++|+.|+++++ .+. .+|...+.|+.|.+.++..-  .+..++         
T Consensus       284 L~~L~Ls~N-~Lt~LP~--------~p~~L~~LdLS~N-~L~-~Lp~lp~~L~~L~Ls~N~L~--~LP~lp---------  341 (788)
T PRK15387        284 LCKLWIFGN-QLTSLPV--------LPPGLQELSVSDN-QLA-SLPALPSELCKLWAYNNQLT--SLPTLP---------  341 (788)
T ss_pred             cCEEECcCC-ccccccc--------cccccceeECCCC-ccc-cCCCCcccccccccccCccc--cccccc---------
Confidence            888988874 3333321        2578999999987 555 46654556777766654311  111111         


Q ss_pred             ccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcc
Q 043667          166 CKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQ  245 (387)
Q Consensus       166 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~  245 (387)
                                   ++|+.|+++++ .+..+|.. +   ++|+.  |.+..+ .+..+|..    ..+|+.|+++++ .+.
T Consensus       342 -------------~~Lq~LdLS~N-~Ls~LP~l-p---~~L~~--L~Ls~N-~L~~LP~l----~~~L~~LdLs~N-~Lt  395 (788)
T PRK15387        342 -------------SGLQELSVSDN-QLASLPTL-P---SELYK--LWAYNN-RLTSLPAL----PSGLKELIVSGN-RLT  395 (788)
T ss_pred             -------------cccceEecCCC-ccCCCCCC-C---cccce--ehhhcc-ccccCccc----ccccceEEecCC-ccc
Confidence                         23444444432 22223221 2   22333  444432 34445532    357999999985 566


Q ss_pred             cchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCc-CCCceEEEeccCC
Q 043667          246 SLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVAL-PSKLKKIEIRKCD  322 (387)
Q Consensus       246 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~-~~~L~~L~l~~c~  322 (387)
                      .++..            +++|+.|+++++ .++.+|..   ..+|+.|++++ +.++.+|.... .++|+.|++++++
T Consensus       396 ~LP~l------------~s~L~~LdLS~N-~LssIP~l---~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        396 SLPVL------------PSELKELMVSGN-RLTSLPML---PSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             CCCCc------------ccCCCEEEccCC-cCCCCCcc---hhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence            55532            278999999985 47778753   35788999988 67888886432 2899999999865

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.37  E-value=6.4e-15  Score=130.78  Aligned_cols=108  Identities=24%  Similarity=0.316  Sum_probs=59.3

Q ss_pred             CCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCcc-CCCCcceEeeccCcccccc----
Q 043667           55 SLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVE-GFPKLRELHILRCSKLQGT----  129 (387)
Q Consensus        55 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~-~~~~L~~L~l~~~~~l~~~----  129 (387)
                      .|+.|.++||..+.+-+...+    ...+|++++|.+.+|.++++...    ..+. .+++|+++.+..|..+++.    
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~----~~~CpnIehL~l~gc~~iTd~s~----~sla~~C~~l~~l~L~~c~~iT~~~Lk~  210 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTF----ASNCPNIEHLALYGCKKITDSSL----LSLARYCRKLRHLNLHSCSSITDVSLKY  210 (483)
T ss_pred             ccccccccccccCCcchhhHH----hhhCCchhhhhhhcceeccHHHH----HHHHHhcchhhhhhhcccchhHHHHHHH
Confidence            466777777755544433322    23466677777666666555433    2332 5667777777766665532    


Q ss_pred             cCCCCCCccEEEeccCcccc-----ccccCCCCcceEEEcCcccee
Q 043667          130 FPEHLPALEMLVIEACKELS-----VSVSSLPALCKLKIGGCKKVV  170 (387)
Q Consensus       130 ~~~~~~~L~~L~l~~~~~l~-----~~~~~~~~L~~L~i~~~~~~~  170 (387)
                      +.+.+++|+.+++++|+.+.     ....++..++.+...||....
T Consensus       211 la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~  256 (483)
T KOG4341|consen  211 LAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE  256 (483)
T ss_pred             HHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc
Confidence            33456777777777776554     223344445555444554444

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.34  E-value=1.8e-14  Score=127.89  Aligned_cols=281  Identities=14%  Similarity=0.230  Sum_probs=194.3

Q ss_pred             CCcceeeccccCCccccccCcCCCCcc-CCCCcceEeeccCcccccc----cCCCCCCccEEEeccCccccc-----ccc
Q 043667           84 PRLETLRFDAMLGWEDWIPLRSGQGVE-GFPKLRELHILRCSKLQGT----FPEHLPALEMLVIEACKELSV-----SVS  153 (387)
Q Consensus        84 ~~L~~L~l~~~~~l~~~~~~~~~~~i~-~~~~L~~L~l~~~~~l~~~----~~~~~~~L~~L~l~~~~~l~~-----~~~  153 (387)
                      ..|+.|.+.+|....+...    .... .+|++++|.+.+|.++++.    +...+++|+.+.+..|..++.     ...
T Consensus       138 g~lk~LSlrG~r~v~~ssl----rt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~  213 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSL----RTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE  213 (483)
T ss_pred             cccccccccccccCCcchh----hHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence            5789999999877665443    3332 6899999999999887642    345689999999999987762     345


Q ss_pred             CCCCcceEEEcCcccee---EecccccCCCCcEEeccCCCCccc--ccCCCCCCCccccceeEEEcCCCCcccccccc-c
Q 043667          154 SLPALCKLKIGGCKKVV---WRSATDHLGSQNSVVCRDTSNQVF--LAGPLKPQLPKLEELILSTKEQTYIWKSHDGL-L  227 (387)
Q Consensus       154 ~~~~L~~L~i~~~~~~~---~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~-l  227 (387)
                      .+++|++++++.|+.+.   +......+..++.+...||...+.  +... -.....+.+  +.+.+|..++...... -
T Consensus       214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~-~~~~~~i~~--lnl~~c~~lTD~~~~~i~  290 (483)
T KOG4341|consen  214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKA-AAYCLEILK--LNLQHCNQLTDEDLWLIA  290 (483)
T ss_pred             hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHH-hccChHhhc--cchhhhccccchHHHHHh
Confidence            78999999999988776   223334455677777778765442  1111 122233333  6666777666433211 1


Q ss_pred             ccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccc--cCCCCCccEEEecCCCCceecC
Q 043667          228 QDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQS--SLSLSSLREIDIYDCSSLVSFP  305 (387)
Q Consensus       228 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~~L~~L~l~~c~~l~~~~  305 (387)
                      ..+..|+.|+.++|..+.+.+       +..+...+++|+.|.+..|..+++.-..  -.+++.|+.+++.+|..+.+-.
T Consensus       291 ~~c~~lq~l~~s~~t~~~d~~-------l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t  363 (483)
T KOG4341|consen  291 CGCHALQVLCYSSCTDITDEV-------LWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGT  363 (483)
T ss_pred             hhhhHhhhhcccCCCCCchHH-------HHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhh
Confidence            247789999999998876653       3333344589999999999987765432  2378899999999987765542


Q ss_pred             CCCcC---CCceEEEeccCCCCCcc-----ccccccCCCCCcceEecccCcccccccCC--CCCCCccEEeecCCccccc
Q 043667          306 EVALP---SKLKKIEIRKCDALKSL-----PEAWMCDTNSSLETLKIERCRSLTYIAGV--QLPPSLKRLDIWNCDNIRT  375 (387)
Q Consensus       306 ~~~~~---~~L~~L~l~~c~~l~~l-----~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~C~~l~~  375 (387)
                      -....   +.||.+.++.|..+++-     ...-.....  |+.+.+.+|+.+++-...  ...++|+.+++.+|-.+++
T Consensus       364 L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~--l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk  441 (483)
T KOG4341|consen  364 LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEG--LEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK  441 (483)
T ss_pred             HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccc--cceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence            22222   88999999999877654     332233445  999999999998876655  5567999999999988877


Q ss_pred             ccccc
Q 043667          376 LTVEE  380 (387)
Q Consensus       376 l~~~~  380 (387)
                      =++..
T Consensus       442 ~~i~~  446 (483)
T KOG4341|consen  442 EAISR  446 (483)
T ss_pred             hhhHH
Confidence            66443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.34  E-value=9.5e-15  Score=129.04  Aligned_cols=315  Identities=17%  Similarity=0.165  Sum_probs=187.5

Q ss_pred             CCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCc
Q 043667            7 NLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRL   86 (387)
Q Consensus         7 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L   86 (387)
                      .|++++...+....+|..++.  +..|.-|++.. +++..+|.|+.+.-|++|.+..+ .++.++.+.     ...++++
T Consensus       184 ~L~~ld~~~N~L~tlP~~lg~--l~~L~~LyL~~-Nki~~lPef~gcs~L~Elh~g~N-~i~~lpae~-----~~~L~~l  254 (565)
T KOG0472|consen  184 RLKHLDCNSNLLETLPPELGG--LESLELLYLRR-NKIRFLPEFPGCSLLKELHVGEN-QIEMLPAEH-----LKHLNSL  254 (565)
T ss_pred             HHHhcccchhhhhcCChhhcc--hhhhHHHHhhh-cccccCCCCCccHHHHHHHhccc-HHHhhHHHH-----hcccccc
Confidence            466666666667777777776  77777777777 37777888777777777777766 666666654     2357888


Q ss_pred             ceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCCCC--CccEEEeccCcccc--c-cccCCC--Ccc
Q 043667           87 ETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLP--ALEMLVIEACKELS--V-SVSSLP--ALC  159 (387)
Q Consensus        87 ~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~~~--~L~~L~l~~~~~l~--~-~~~~~~--~L~  159 (387)
                      ..|++.+ .+++...     +++..+.+|++|+++++ .++ .+|-.+.  .|+.|.+.|.+--+  . .+.+-+  -|+
T Consensus       255 ~vLDLRd-Nklke~P-----de~clLrsL~rLDlSNN-~is-~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLK  326 (565)
T KOG0472|consen  255 LVLDLRD-NKLKEVP-----DEICLLRSLERLDLSNN-DIS-SLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLK  326 (565)
T ss_pred             eeeeccc-cccccCc-----hHHHHhhhhhhhcccCC-ccc-cCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHH
Confidence            8888886 4455543     45556788888888876 333 4554443  45555555543111  0 000000  011


Q ss_pred             eEEEc-Ccccee---------------EecccccCCCCcEEeccCCCCcccccCCC----------------------CC
Q 043667          160 KLKIG-GCKKVV---------------WRSATDHLGSQNSVVCRDTSNQVFLAGPL----------------------KP  201 (387)
Q Consensus       160 ~L~i~-~~~~~~---------------~~~~~~~~~~L~~L~l~~~~~l~~~~~~~----------------------~~  201 (387)
                      +|.=. .++...               .+....+.-+.+.|++++-. ++..|...                      |.
T Consensus       327 yLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q-lt~VPdEVfea~~~~~Vt~VnfskNqL~elPk  405 (565)
T KOG0472|consen  327 YLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ-LTLVPDEVFEAAKSEIVTSVNFSKNQLCELPK  405 (565)
T ss_pred             HHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc-cccCCHHHHHHhhhcceEEEecccchHhhhhh
Confidence            11000 000000               00001112233334333211 11111000                      22


Q ss_pred             CCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcc
Q 043667          202 QLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLP  281 (387)
Q Consensus       202 ~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~  281 (387)
                      .++.++++.=.+.-..+...++...+..+++|+.|++++ +-+.++|.+     +..+    ..|+.|+++.+ .+..+|
T Consensus       406 ~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e-----~~~l----v~Lq~LnlS~N-rFr~lP  474 (565)
T KOG0472|consen  406 RLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDLPEE-----MGSL----VRLQTLNLSFN-RFRMLP  474 (565)
T ss_pred             hhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhcchh-----hhhh----hhhheeccccc-ccccch
Confidence            333333311011112223344444567889999999997 577888875     3444    67999999985 677888


Q ss_pred             cccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCccccccccCCCCCcceEecccCcccccccCC
Q 043667          282 QSSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGV  356 (387)
Q Consensus       282 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~  356 (387)
                      ..+.....++.+-.++ +.+..++..++.  .+|..|++.+ +.+..+|..++++++  |++|++++. .++ .|..
T Consensus       475 ~~~y~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~Lgnmtn--L~hLeL~gN-pfr-~Pr~  545 (565)
T KOG0472|consen  475 ECLYELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTN--LRHLELDGN-PFR-QPRH  545 (565)
T ss_pred             HHHhhHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCC-CchhhCChhhccccc--eeEEEecCC-ccC-CCHH
Confidence            8777666677666665 788888876544  8999999987 669999999999999  999999994 555 4543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.17  E-value=1.5e-10  Score=115.44  Aligned_cols=114  Identities=11%  Similarity=0.053  Sum_probs=52.4

Q ss_pred             CCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCCC
Q 043667           55 SLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHL  134 (387)
Q Consensus        55 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~~  134 (387)
                      +...|++.+. .++.+|...        .+.|+.|++.++ ++.....     .  .+++|+.|+++++ .++ .+|..+
T Consensus       179 ~~~~L~L~~~-~LtsLP~~I--------p~~L~~L~Ls~N-~LtsLP~-----~--l~~nL~~L~Ls~N-~Lt-sLP~~l  239 (754)
T PRK15370        179 NKTELRLKIL-GLTTIPACI--------PEQITTLILDNN-ELKSLPE-----N--LQGNIKTLYANSN-QLT-SIPATL  239 (754)
T ss_pred             CceEEEeCCC-CcCcCCccc--------ccCCcEEEecCC-CCCcCCh-----h--hccCCCEEECCCC-ccc-cCChhh
Confidence            4556666665 455555431        245666666653 3333221     1  1346777777655 344 445432


Q ss_pred             -CCccEEEeccCccccccccCCCCcceEEEcCccceeEecccccCCCCcEEeccCC
Q 043667          135 -PALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDT  189 (387)
Q Consensus       135 -~~L~~L~l~~~~~l~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~  189 (387)
                       ++|+.|+++++......-....+|+.|+++++....++..+  .++|+.|+++++
T Consensus       240 ~~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N  293 (754)
T PRK15370        240 PDTIQEMELSINRITELPERLPSALQSLDLFHNKISCLPENL--PEELRYLSVYDN  293 (754)
T ss_pred             hccccEEECcCCccCcCChhHhCCCCEEECcCCccCcccccc--CCCCcEEECCCC
Confidence             35666666655422110011134555555544322222211  234555555543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.14  E-value=4e-11  Score=121.32  Aligned_cols=240  Identities=22%  Similarity=0.210  Sum_probs=124.6

Q ss_pred             CCCcEEEEcCcC--CCCCCCc-cCCccCCCccEEEeecCCCCCCCCC-cCCcCCCcEEEecCCCCceEeCccccCCCccc
Q 043667            6 KNLEQFCISGYR--GAKFPTW-FGDSSFSNLVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAI   81 (387)
Q Consensus         6 ~~L~~L~l~~~~--~~~~p~~-~~~~~l~~L~~L~l~~c~~~~~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~   81 (387)
                      ++|+.|-+.++.  ....+.. +.  .++.|++||+++|.....+|. |+.+.+||+|++.++ .++.+|..      +.
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~--~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~------l~  615 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFR--SLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSG------LG  615 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHh--hCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchH------HH
Confidence            356777776654  3333332 22  278888888888888888885 888888888888888 67777766      35


Q ss_pred             CCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCc-ccccccC---CCCCCccEEEeccCcc-ccccccCCC
Q 043667           82 PFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCS-KLQGTFP---EHLPALEMLVIEACKE-LSVSVSSLP  156 (387)
Q Consensus        82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~-~l~~~~~---~~~~~L~~L~l~~~~~-l~~~~~~~~  156 (387)
                      .+..|.+|++.....+....     .....+++|++|.+.... ..+....   ..+.+|+.+.+..+.. +...+...+
T Consensus       616 ~Lk~L~~Lnl~~~~~l~~~~-----~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~  690 (889)
T KOG4658|consen  616 NLKKLIYLNLEVTGRLESIP-----GILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMT  690 (889)
T ss_pred             HHHhhheecccccccccccc-----chhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhH
Confidence            67777777777655544331     111247778887775432 1110011   2234444444433322 001111222


Q ss_pred             Ccc----eEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccc-cCC
Q 043667          157 ALC----KLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQ-DIC  231 (387)
Q Consensus       157 ~L~----~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~-~~~  231 (387)
                      +|.    .+.+.++...+.......+.+|+.|.+.+|...+.....                       ....... .++
T Consensus       691 ~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~-----------------------~~~~~~~~~f~  747 (889)
T KOG4658|consen  691 RLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEW-----------------------EESLIVLLCFP  747 (889)
T ss_pred             HHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhccc-----------------------ccccchhhhHH
Confidence            222    222222222333344444555555555554432211100                       0000001 245


Q ss_pred             CccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccE
Q 043667          232 SLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLRE  292 (387)
Q Consensus       232 ~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~  292 (387)
                      ++..+.+.+|...+...+..          .+|+|+.|.+.+|..++++.+....+..+..
T Consensus       748 ~l~~~~~~~~~~~r~l~~~~----------f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~  798 (889)
T KOG4658|consen  748 NLSKVSILNCHMLRDLTWLL----------FAPHLTSLSLVSCRLLEDIIPKLKALLELKE  798 (889)
T ss_pred             HHHHHHhhccccccccchhh----------ccCcccEEEEecccccccCCCHHHHhhhccc
Confidence            56666666666665543321          1277888888877777766655444444444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.11  E-value=6.1e-10  Score=111.10  Aligned_cols=115  Identities=14%  Similarity=0.204  Sum_probs=74.7

Q ss_pred             CCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCC
Q 043667            6 KNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPR   85 (387)
Q Consensus         6 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~   85 (387)
                      .+...|+++++....+|..+.    ++|+.|+++++ .++.+|. ...++|+.|++.++ .++.++..+        .++
T Consensus       178 ~~~~~L~L~~~~LtsLP~~Ip----~~L~~L~Ls~N-~LtsLP~-~l~~nL~~L~Ls~N-~LtsLP~~l--------~~~  242 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACIP----EQITTLILDNN-ELKSLPE-NLQGNIKTLYANSN-QLTSIPATL--------PDT  242 (754)
T ss_pred             cCceEEEeCCCCcCcCCcccc----cCCcEEEecCC-CCCcCCh-hhccCCCEEECCCC-ccccCChhh--------hcc
Confidence            456788888888888887653    46888999885 7777775 22368899998887 677666432        356


Q ss_pred             cceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCCC-CCccEEEeccC
Q 043667           86 LETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHL-PALEMLVIEAC  145 (387)
Q Consensus        86 L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~~-~~L~~L~l~~~  145 (387)
                      |+.|+++++. +....     ..+  ..+|+.|+++++ .+. .+|..+ ++|+.|+++++
T Consensus       243 L~~L~Ls~N~-L~~LP-----~~l--~s~L~~L~Ls~N-~L~-~LP~~l~~sL~~L~Ls~N  293 (754)
T PRK15370        243 IQEMELSINR-ITELP-----ERL--PSALQSLDLFHN-KIS-CLPENLPEELRYLSVYDN  293 (754)
T ss_pred             ccEEECcCCc-cCcCC-----hhH--hCCCCEEECcCC-ccC-ccccccCCCCcEEECCCC
Confidence            8888887643 22221     111  346788888754 554 455433 36666666665

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.97  E-value=3.5e-10  Score=114.54  Aligned_cols=74  Identities=20%  Similarity=0.195  Sum_probs=40.9

Q ss_pred             cccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceec
Q 043667          227 LQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSF  304 (387)
Q Consensus       227 l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~  304 (387)
                      +..+.+|+.|.+.+|...+.............   .|+++.++.+.+|+...... +..-.++|+.|.+.+|+.+..+
T Consensus       713 ~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~---~f~~l~~~~~~~~~~~r~l~-~~~f~~~L~~l~l~~~~~~e~~  786 (889)
T KOG4658|consen  713 LGSLGNLEELSILDCGISEIVIEWEESLIVLL---CFPNLSKVSILNCHMLRDLT-WLLFAPHLTSLSLVSCRLLEDI  786 (889)
T ss_pred             cccccCcceEEEEcCCCchhhcccccccchhh---hHHHHHHHHhhccccccccc-hhhccCcccEEEEecccccccC
Confidence            44677888888888766442211000000000   13566666677776555433 2334578888888887776654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.91  E-value=6.2e-11  Score=105.02  Aligned_cols=271  Identities=15%  Similarity=0.127  Sum_probs=162.0

Q ss_pred             CCCCCCccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccC
Q 043667           18 GAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAML   95 (387)
Q Consensus        18 ~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~   95 (387)
                      ..++|..+..    +-..|++.. +.++.+|+  ++.+++||+|+++++ .++.|.+.-     +.++++|.+|.+.+..
T Consensus        58 L~eVP~~LP~----~tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~A-----F~GL~~l~~Lvlyg~N  126 (498)
T KOG4237|consen   58 LTEVPANLPP----ETVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDA-----FKGLASLLSLVLYGNN  126 (498)
T ss_pred             cccCcccCCC----cceEEEecc-CCcccCChhhccchhhhceeccccc-chhhcChHh-----hhhhHhhhHHHhhcCC
Confidence            3445654432    566788877 48888986  888999999999998 788876654     3467888888888877


Q ss_pred             CccccccCcCCCCccCCCCcceEeeccCccccc---ccCCCCCCccEEEeccCcccc---ccccCCCCcceEEEcCccce
Q 043667           96 GWEDWIPLRSGQGVEGFPKLRELHILRCSKLQG---TFPEHLPALEMLVIEACKELS---VSVSSLPALCKLKIGGCKKV  169 (387)
Q Consensus        96 ~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~---~~~~~~~~L~~L~l~~~~~l~---~~~~~~~~L~~L~i~~~~~~  169 (387)
                      ++++...    +.++++..++.|.+.-+ ...-   .....++++..|.+.+...-.   ..+..+..++.+.+..+..+
T Consensus       127 kI~~l~k----~~F~gL~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~i  201 (498)
T KOG4237|consen  127 KITDLPK----GAFGGLSSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFI  201 (498)
T ss_pred             chhhhhh----hHhhhHHHHHHHhcChh-hhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccc
Confidence            7777765    55566777777776532 2211   111235666666665543111   23445555666655443321


Q ss_pred             eEecccccCCCCcEE------eccC--C--------CCcccccCCC-CCCCccccceeEEEcCCCCcccccccccccCCC
Q 043667          170 VWRSATDHLGSQNSV------VCRD--T--------SNQVFLAGPL-KPQLPKLEELILSTKEQTYIWKSHDGLLQDICS  232 (387)
Q Consensus       170 ~~~~~~~~~~~L~~L------~l~~--~--------~~l~~~~~~~-~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~  232 (387)
                      ..    .+++.+...      ..++  |        .....+.... ..+++.+.+  --...|......|..-++.+++
T Consensus       202 cd----CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s--~~~~~d~~d~~cP~~cf~~L~~  275 (498)
T KOG4237|consen  202 CD----CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPS--RLSSEDFPDSICPAKCFKKLPN  275 (498)
T ss_pred             cc----cccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHH--hhccccCcCCcChHHHHhhccc
Confidence            10    001111000      0000  0        0000000000 011111111  1122333344455555788999


Q ss_pred             ccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCccc-ccCCCCCccEEEecCCCCceecCCCCcC-
Q 043667          233 LKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQ-SSLSLSSLREIDIYDCSSLVSFPEVALP-  310 (387)
Q Consensus       233 L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~-  310 (387)
                      |++|++++ +.++.+.+.    +|+..    ..+++|.+.. ++++.+.. .++.+..|++|++.+ ++|+.+..+.|. 
T Consensus       276 L~~lnlsn-N~i~~i~~~----aFe~~----a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~~aF~~  344 (498)
T KOG4237|consen  276 LRKLNLSN-NKITRIEDG----AFEGA----AELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYD-NQITTVAPGAFQT  344 (498)
T ss_pred             ceEeccCC-Cccchhhhh----hhcch----hhhhhhhcCc-chHHHHHHHhhhccccceeeeecC-CeeEEEecccccc
Confidence            99999998 577776654    57766    8999999988 45766654 367889999999998 789998887776 


Q ss_pred             -CCceEEEeccC
Q 043667          311 -SKLKKIEIRKC  321 (387)
Q Consensus       311 -~~L~~L~l~~c  321 (387)
                       .+|.+|++.++
T Consensus       345 ~~~l~~l~l~~N  356 (498)
T KOG4237|consen  345 LFSLSTLNLLSN  356 (498)
T ss_pred             cceeeeeehccC
Confidence             68888888754

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.86  E-value=8.4e-11  Score=92.67  Aligned_cols=152  Identities=19%  Similarity=0.228  Sum_probs=118.1

Q ss_pred             EEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCc
Q 043667          211 LSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSL  290 (387)
Q Consensus       211 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L  290 (387)
                      +.+++ +.++.+|.. ++.+.+|+.|++++ +.++++|.     ++..+    ++|+.|++.- +.+..+|.+++++|.|
T Consensus        38 LtLSH-NKl~~vppn-ia~l~nlevln~~n-nqie~lp~-----~issl----~klr~lnvgm-nrl~~lprgfgs~p~l  104 (264)
T KOG0617|consen   38 LTLSH-NKLTVVPPN-IAELKNLEVLNLSN-NQIEELPT-----SISSL----PKLRILNVGM-NRLNILPRGFGSFPAL  104 (264)
T ss_pred             hhccc-CceeecCCc-HHHhhhhhhhhccc-chhhhcCh-----hhhhc----hhhhheecch-hhhhcCccccCCCchh
Confidence            55554 345666766 56788999999987 57777766     46666    9999999874 6688899999999999


Q ss_pred             cEEEecCCCCce--ecCCCCcC-CCceEEEeccCCCCCccccccccCCCCCcceEecccCcccccccCC-CCCCCccEEe
Q 043667          291 REIDIYDCSSLV--SFPEVALP-SKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGV-QLPPSLKRLD  366 (387)
Q Consensus       291 ~~L~l~~c~~l~--~~~~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~  366 (387)
                      +.|++.+. ++.  ++|-.-|. ..|+.|.+++ +..+.+|..++..++  |+.|.+.+ +.+-.+|.. +-+.+|+.|.
T Consensus       105 evldltyn-nl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~--lqil~lrd-ndll~lpkeig~lt~lrelh  179 (264)
T KOG0617|consen  105 EVLDLTYN-NLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTN--LQILSLRD-NDLLSLPKEIGDLTRLRELH  179 (264)
T ss_pred             hhhhcccc-ccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcc--eeEEeecc-CchhhCcHHHHHHHHHHHHh
Confidence            99999884 432  23322122 7788888887 458889988888899  99999999 578788877 7778999999


Q ss_pred             ecCCccccccccccc
Q 043667          367 IWNCDNIRTLTVEEG  381 (387)
Q Consensus       367 l~~C~~l~~l~~~~~  381 (387)
                      |.| ++++-+|.+.|
T Consensus       180 iqg-nrl~vlppel~  193 (264)
T KOG0617|consen  180 IQG-NRLTVLPPELA  193 (264)
T ss_pred             ccc-ceeeecChhhh
Confidence            999 88999998876

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.73  E-value=2.9e-10  Score=89.64  Aligned_cols=146  Identities=18%  Similarity=0.265  Sum_probs=102.1

Q ss_pred             CCCccEEEeecCCCCCCCCC-cCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCC
Q 043667           30 FSNLVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQG  108 (387)
Q Consensus        30 l~~L~~L~l~~c~~~~~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  108 (387)
                      +++...|.++++ +++.+|+ |+.+.+|+.|++.++ +++++|..      ...+++|+.|.+. +..+....     .+
T Consensus        32 ~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nn-qie~lp~~------issl~klr~lnvg-mnrl~~lp-----rg   97 (264)
T KOG0617|consen   32 MSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNN-QIEELPTS------ISSLPKLRILNVG-MNRLNILP-----RG   97 (264)
T ss_pred             hhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccc-hhhhcChh------hhhchhhhheecc-hhhhhcCc-----cc
Confidence            566777777774 6666654 777888888888777 77777665      2457777777766 22222221     45


Q ss_pred             ccCCCCcceEeeccCcccccccCCC---CCCccEEEeccCc--cccccccCCCCcceEEEcCccceeEecccccCCCCcE
Q 043667          109 VEGFPKLRELHILRCSKLQGTFPEH---LPALEMLVIEACK--ELSVSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNS  183 (387)
Q Consensus       109 i~~~~~L~~L~l~~~~~l~~~~~~~---~~~L~~L~l~~~~--~l~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~  183 (387)
                      ++.+|.|+.|+++.+.--...+|..   ++.|+-|.+.+.+  .++..++++++|+.|.+++++.++.+..++.++.|++
T Consensus        98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lre  177 (264)
T KOG0617|consen   98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRE  177 (264)
T ss_pred             cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHH
Confidence            5668888888887653333356654   4567767776544  4557788999999999999999998888888899999


Q ss_pred             EeccCC
Q 043667          184 VVCRDT  189 (387)
Q Consensus       184 L~l~~~  189 (387)
                      |++.+.
T Consensus       178 lhiqgn  183 (264)
T KOG0617|consen  178 LHIQGN  183 (264)
T ss_pred             Hhcccc
Confidence            888864

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.70  E-value=3.1e-09  Score=97.23  Aligned_cols=132  Identities=21%  Similarity=0.203  Sum_probs=68.6

Q ss_pred             cccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCC-----CcccccCCCCCccEEEecCCCCc
Q 043667          227 LQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLV-----KLPQSSLSLSSLREIDIYDCSSL  301 (387)
Q Consensus       227 l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~-----~~~~~~~~~~~L~~L~l~~c~~l  301 (387)
                      +..+++|++|++++|. +...........+...    ++|+.|++++|. ++     .+...+..+++|+.|++++| .+
T Consensus       161 ~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~----~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l  233 (319)
T cd00116         161 LRANRDLKELNLANNG-IGDAGIRALAEGLKAN----CNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDN-NL  233 (319)
T ss_pred             HHhCCCcCEEECcCCC-CchHHHHHHHHHHHhC----CCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCC-cC
Confidence            3445678888887753 3321111111123322    578888887764 33     22334556777888888775 34


Q ss_pred             eecCCC----Cc---CCCceEEEeccCCCCC-----ccccccccCCCCCcceEecccCcccccccCC------CCC-CCc
Q 043667          302 VSFPEV----AL---PSKLKKIEIRKCDALK-----SLPEAWMCDTNSSLETLKIERCRSLTYIAGV------QLP-PSL  362 (387)
Q Consensus       302 ~~~~~~----~~---~~~L~~L~l~~c~~l~-----~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~------~~~-~~L  362 (387)
                      +.....    .+   .+.|++|++.+|. ++     .+...+...+.  |+.++++++ .+++.+..      ..+ +.|
T Consensus       234 ~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~--L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~  309 (319)
T cd00116         234 TDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKES--LLELDLRGN-KFGEEGAQLLAESLLEPGNEL  309 (319)
T ss_pred             chHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCC--ccEEECCCC-CCcHHHHHHHHHHHhhcCCch
Confidence            321100    11   1578888887764 43     22233333344  888888774 45432111      122 567


Q ss_pred             cEEeecC
Q 043667          363 KRLDIWN  369 (387)
Q Consensus       363 ~~L~l~~  369 (387)
                      ++++|.+
T Consensus       310 ~~~~~~~  316 (319)
T cd00116         310 ESLWVKD  316 (319)
T ss_pred             hhcccCC
Confidence            7777665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.63  E-value=1.9e-08  Score=92.06  Aligned_cols=159  Identities=21%  Similarity=0.157  Sum_probs=93.4

Q ss_pred             ccccceeEEEcCCCCcc----cccccccccC-CCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCC
Q 043667          204 PKLEELILSTKEQTYIW----KSHDGLLQDI-CSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLV  278 (387)
Q Consensus       204 ~~L~~l~L~l~~~~~~~----~~~~~~l~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~  278 (387)
                      ++|++  +.++++....    .+.. .+..+ ++|++|++++|.-... ........+...    ++|++|++++|. ++
T Consensus       108 ~~L~~--L~ls~~~~~~~~~~~l~~-~l~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~~~----~~L~~L~l~~n~-l~  178 (319)
T cd00116         108 SSLQE--LKLNNNGLGDRGLRLLAK-GLKDLPPALEKLVLGRNRLEGA-SCEALAKALRAN----RDLKELNLANNG-IG  178 (319)
T ss_pred             CcccE--EEeeCCccchHHHHHHHH-HHHhCCCCceEEEcCCCcCCch-HHHHHHHHHHhC----CCcCEEECcCCC-Cc
Confidence            34565  6666654321    1111 13445 8999999999754322 112222234444    789999999865 44


Q ss_pred             -----CcccccCCCCCccEEEecCCCCceecCCC------CcCCCceEEEeccCCCCCc-----cccccccCCCCCcceE
Q 043667          279 -----KLPQSSLSLSSLREIDIYDCSSLVSFPEV------ALPSKLKKIEIRKCDALKS-----LPEAWMCDTNSSLETL  342 (387)
Q Consensus       279 -----~~~~~~~~~~~L~~L~l~~c~~l~~~~~~------~~~~~L~~L~l~~c~~l~~-----l~~~~~~~~~~~L~~L  342 (387)
                           .++..+..+++|+.|++++| .++.....      ...++|++|++++|. +.+     +...+.. ..+.|++|
T Consensus       179 ~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~-~~~~L~~L  255 (319)
T cd00116         179 DAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLS-PNISLLTL  255 (319)
T ss_pred             hHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhc-cCCCceEE
Confidence                 23334556689999999986 44422211      112789999999975 543     1122111 11349999


Q ss_pred             ecccCccccc-----ccCC-CCCCCccEEeecCCcccccc
Q 043667          343 KIERCRSLTY-----IAGV-QLPPSLKRLDIWNCDNIRTL  376 (387)
Q Consensus       343 ~l~~c~~l~~-----~~~~-~~~~~L~~L~l~~C~~l~~l  376 (387)
                      ++++| .+++     +... ...++|++++++++ +++.-
T Consensus       256 ~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~  293 (319)
T cd00116         256 SLSCN-DITDDGAKDLAEVLAEKESLLELDLRGN-KFGEE  293 (319)
T ss_pred             EccCC-CCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHH
Confidence            99998 5542     2111 33478999999984 45533

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.57  E-value=4.3e-07  Score=83.36  Aligned_cols=63  Identities=17%  Similarity=0.121  Sum_probs=34.7

Q ss_pred             cCCCCcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCccccc
Q 043667          153 SSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSH  223 (387)
Q Consensus       153 ~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~  223 (387)
                      ..+++++.|++++|....++   .-.++|++|.+++|..+..++...+   ++|++  |.+.+|..+..+|
T Consensus        49 ~~~~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~LP---~nLe~--L~Ls~Cs~L~sLP  111 (426)
T PRK15386         49 EEARASGRLYIKDCDIESLP---VLPNELTEITIENCNNLTTLPGSIP---EGLEK--LTVCHCPEISGLP  111 (426)
T ss_pred             HHhcCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCcccCCchhh---hhhhh--eEccCcccccccc
Confidence            34567777887777333333   1234577777777766665554322   23444  6666665554433

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.52  E-value=3.4e-09  Score=94.20  Aligned_cols=122  Identities=16%  Similarity=0.201  Sum_probs=68.8

Q ss_pred             CCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCC-
Q 043667           55 SLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEH-  133 (387)
Q Consensus        55 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~-  133 (387)
                      .-..+.++.+ +++.+|...|     ..+++|+.|++++ .+++...+    +++..++.+..|.+.+..+++ .+|.. 
T Consensus        68 ~tveirLdqN-~I~~iP~~aF-----~~l~~LRrLdLS~-N~Is~I~p----~AF~GL~~l~~Lvlyg~NkI~-~l~k~~  135 (498)
T KOG4237|consen   68 ETVEIRLDQN-QISSIPPGAF-----KTLHRLRRLDLSK-NNISFIAP----DAFKGLASLLSLVLYGNNKIT-DLPKGA  135 (498)
T ss_pred             cceEEEeccC-CcccCChhhc-----cchhhhceecccc-cchhhcCh----HhhhhhHhhhHHHhhcCCchh-hhhhhH
Confidence            4556667766 7777776654     3577788888776 44555544    455456677777776655665 45532 


Q ss_pred             ---CCCccEEEeccCc---cccccccCCCCcceEEEcCccceeEec-ccccCCCCcEEeccC
Q 043667          134 ---LPALEMLVIEACK---ELSVSVSSLPALCKLKIGGCKKVVWRS-ATDHLGSQNSVVCRD  188 (387)
Q Consensus       134 ---~~~L~~L~l~~~~---~l~~~~~~~~~L~~L~i~~~~~~~~~~-~~~~~~~L~~L~l~~  188 (387)
                         +..|+.|.+..+.   .....+..++++..|.+.++....+.. .+..+..++.+++..
T Consensus       136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~  197 (498)
T KOG4237|consen  136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQ  197 (498)
T ss_pred             hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhc
Confidence               3445555544332   112455666677777666654444333 333445555555544

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.51  E-value=3e-07  Score=84.41  Aligned_cols=136  Identities=23%  Similarity=0.323  Sum_probs=89.2

Q ss_pred             CccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCccc
Q 043667          203 LPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQ  282 (387)
Q Consensus       203 l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~  282 (387)
                      +.+++.  |.+++| .++.+|.    -.++|++|.+++|..+..++..     +      +++|++|++++|..+..+|.
T Consensus        51 ~~~l~~--L~Is~c-~L~sLP~----LP~sLtsL~Lsnc~nLtsLP~~-----L------P~nLe~L~Ls~Cs~L~sLP~  112 (426)
T PRK15386         51 ARASGR--LYIKDC-DIESLPV----LPNELTEITIENCNNLTTLPGS-----I------PEGLEKLTVCHCPEISGLPE  112 (426)
T ss_pred             hcCCCE--EEeCCC-CCcccCC----CCCCCcEEEccCCCCcccCCch-----h------hhhhhheEccCccccccccc
Confidence            466666  888887 6777762    2346899999888888776542     2      26888899988877776664


Q ss_pred             ccCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCC--CccccccccCCCCCcceEecccCcccccccCCCCCC
Q 043667          283 SSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDAL--KSLPEAWMCDTNSSLETLKIERCRSLTYIAGVQLPP  360 (387)
Q Consensus       283 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l--~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~  360 (387)
                            +|+.|++.+ +....++  .+|++|+.|.+.+....  ..++..  -..+  |++|++++|..+ .+|. ..+.
T Consensus       113 ------sLe~L~L~~-n~~~~L~--~LPssLk~L~I~~~n~~~~~~lp~~--LPsS--Lk~L~Is~c~~i-~LP~-~LP~  177 (426)
T PRK15386        113 ------SVRSLEIKG-SATDSIK--NVPNGLTSLSINSYNPENQARIDNL--ISPS--LKTLSLTGCSNI-ILPE-KLPE  177 (426)
T ss_pred             ------ccceEEeCC-CCCcccc--cCcchHhheeccccccccccccccc--cCCc--ccEEEecCCCcc-cCcc-cccc
Confidence                  467777753 3433333  45578888887543311  112211  1244  999999999755 3442 4678


Q ss_pred             CccEEeecCCc
Q 043667          361 SLKRLDIWNCD  371 (387)
Q Consensus       361 ~L~~L~l~~C~  371 (387)
                      +|++|+++.+.
T Consensus       178 SLk~L~ls~n~  188 (426)
T PRK15386        178 SLQSITLHIEQ  188 (426)
T ss_pred             cCcEEEecccc
Confidence            99999998753

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.51  E-value=1e-07  Score=77.88  Aligned_cols=110  Identities=18%  Similarity=0.273  Sum_probs=35.4

Q ss_pred             CCCCCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccC
Q 043667            3 EPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIP   82 (387)
Q Consensus         3 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~   82 (387)
                      ..+.++|+|++.|+.+..+.. ++. .+.+|+.|++++| .++.+..+..+++|+.|+++++ .++.++..+     ...
T Consensus        16 ~n~~~~~~L~L~~n~I~~Ie~-L~~-~l~~L~~L~Ls~N-~I~~l~~l~~L~~L~~L~L~~N-~I~~i~~~l-----~~~   86 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTIEN-LGA-TLDKLEVLDLSNN-QITKLEGLPGLPRLKTLDLSNN-RISSISEGL-----DKN   86 (175)
T ss_dssp             --------------------S---T-T-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHH-----HHH
T ss_pred             ccccccccccccccccccccc-hhh-hhcCCCEEECCCC-CCccccCccChhhhhhcccCCC-CCCccccch-----HHh
Confidence            345678999999999887753 432 2788999999995 8888888889999999999998 677665332     124


Q ss_pred             CCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcc
Q 043667           83 FPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSK  125 (387)
Q Consensus        83 ~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~  125 (387)
                      +|+|++|.+++ .++.++..   -..+..+++|+.|++.+++.
T Consensus        87 lp~L~~L~L~~-N~I~~l~~---l~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   87 LPNLQELYLSN-NKISDLNE---LEPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             -TT--EEE-TT-S---SCCC---CGGGGG-TT--EEE-TT-GG
T ss_pred             CCcCCEEECcC-CcCCChHH---hHHHHcCCCcceeeccCCcc
Confidence            78899888875 33333311   02233577788888877654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=2.6e-09  Score=91.62  Aligned_cols=180  Identities=15%  Similarity=0.079  Sum_probs=112.6

Q ss_pred             CccEEEeccCc----cccccccCCCCcceEEEcCcccee-EecccccCCCCcEEeccCCCCcccccCCC-CCCCccccce
Q 043667          136 ALEMLVIEACK----ELSVSVSSLPALCKLKIGGCKKVV-WRSATDHLGSQNSVVCRDTSNQVFLAGPL-KPQLPKLEEL  209 (387)
Q Consensus       136 ~L~~L~l~~~~----~l~~~~~~~~~L~~L~i~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~l~~L~~l  209 (387)
                      .|+.++++...    .+...+..|.+|+.|.+.|..... +...+..-.+|+++++++|.+.++..... .++++.|.+ 
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~-  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE-  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh-
Confidence            47777776643    222455677888888888754322 33344455788899988888776543222 567777777 


Q ss_pred             eEEEcCCCCcccccccccc-cCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCC-cccccCCC
Q 043667          210 ILSTKEQTYIWKSHDGLLQ-DICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVK-LPQSSLSL  287 (387)
Q Consensus       210 ~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~-~~~~~~~~  287 (387)
                       +.+++|...+.....+.. --++|+.|+++||..  .+...    .+..+...+|+|..|++++|..++. +...+-.+
T Consensus       265 -LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rr--nl~~s----h~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf  337 (419)
T KOG2120|consen  265 -LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRR--NLQKS----HLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKF  337 (419)
T ss_pred             -cCchHhhccchhhhHHHhhhchhhhhhhhhhhHh--hhhhh----HHHHHHHhCCceeeeccccccccCchHHHHHHhc
Confidence             888887766543322222 246788888888643  22211    3444455678888888888876653 33345578


Q ss_pred             CCccEEEecCCCCceecCCCCc--CCCceEEEeccCCC
Q 043667          288 SSLREIDIYDCSSLVSFPEVAL--PSKLKKIEIRKCDA  323 (387)
Q Consensus       288 ~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~~  323 (387)
                      +.|++|.++.|..+..-....+  .|+|.+|++.||-.
T Consensus       338 ~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  338 NYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             chheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence            8888888888876542211112  27888888888753

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=1.3e-07  Score=81.43  Aligned_cols=133  Identities=19%  Similarity=0.305  Sum_probs=59.0

Q ss_pred             cCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCc-ccccC-CCCCccEEEecCCCCceecCC
Q 043667          229 DICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKL-PQSSL-SLSSLREIDIYDCSSLVSFPE  306 (387)
Q Consensus       229 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~-~~~~~-~~~~L~~L~l~~c~~l~~~~~  306 (387)
                      +-.+|+.|+++.|..+....       ..-+...+..|.+|++++|.-.++. ...+. --++|..|++++|.+.-....
T Consensus       232 kN~~L~~lnlsm~sG~t~n~-------~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh  304 (419)
T KOG2120|consen  232 KNSNLVRLNLSMCSGFTENA-------LQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSH  304 (419)
T ss_pred             ccccceeeccccccccchhH-------HHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhH
Confidence            44556666666555554432       2222223355555566555432221 11111 124555555555443211111


Q ss_pred             CC-c---CCCceEEEeccCCCCCc-cccccccCCCCCcceEecccCcccccccC--CCCCCCccEEeecCC
Q 043667          307 VA-L---PSKLKKIEIRKCDALKS-LPEAWMCDTNSSLETLKIERCRSLTYIAG--VQLPPSLKRLDIWNC  370 (387)
Q Consensus       307 ~~-~---~~~L~~L~l~~c~~l~~-l~~~~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~C  370 (387)
                      .. +   .|+|.+|++++|..++. ....+..+..  |++|.++.|-.+.--..  ....|+|.+||+.||
T Consensus       305 ~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~--L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  305 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY--LQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             HHHHHHhCCceeeeccccccccCchHHHHHHhcch--heeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            00 0   15666666666655543 2233444555  66666666643321100  023456666666654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=2.2e-07  Score=83.98  Aligned_cols=173  Identities=17%  Similarity=0.167  Sum_probs=105.2

Q ss_pred             CCCCcEEEEcCcCCCCCCC--ccCCccCCCccEEEeecCCCCCCCCC----cCCcCCCcEEEecCCCCceEeCccccCCC
Q 043667            5 HKNLEQFCISGYRGAKFPT--WFGDSSFSNLVTLKFEYCGMCPTLPS----VGQLPSLKHLAVCGMTSVKRLGSEFYGKG   78 (387)
Q Consensus         5 ~~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~L~l~~c~~~~~l~~----~~~l~~L~~L~l~~~~~l~~~~~~~~~~~   78 (387)
                      .++||.+.+.+++....+.  ....  |++++.|+++.+ -+....+    +..||+|+.|+++.+ .+.....+..   
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~~~k~--~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~---  192 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEEYSKI--LPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNT---  192 (505)
T ss_pred             HHhhhheeecCccccccchhhhhhh--CCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccc-cccCCccccc---
Confidence            4578888888887766553  3333  888889888874 2222222    456888888888877 3333222211   


Q ss_pred             cccCCCCcceeeccccCCc-cccccCcCCCCccCCCCcceEeeccCc-ccccccCC-CCCCccEEEeccCcccc----cc
Q 043667           79 AAIPFPRLETLRFDAMLGW-EDWIPLRSGQGVEGFPKLRELHILRCS-KLQGTFPE-HLPALEMLVIEACKELS----VS  151 (387)
Q Consensus        79 ~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~i~~~~~L~~L~l~~~~-~l~~~~~~-~~~~L~~L~l~~~~~l~----~~  151 (387)
                       ...+++|+.|.+..|.-- .+..     .-+..||+|+.|++..+. .+....+. .+..|+.|++++...+.    ..
T Consensus       193 -~~~l~~lK~L~l~~CGls~k~V~-----~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~  266 (505)
T KOG3207|consen  193 -TLLLSHLKQLVLNSCGLSWKDVQ-----WILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYK  266 (505)
T ss_pred             -hhhhhhhheEEeccCCCCHHHHH-----HHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccc
Confidence             235788888888877532 1111     111258888888887763 22222232 25678888888876554    33


Q ss_pred             ccCCCCcceEEEcCcccee--Eecc-----cccCCCCcEEeccCCC
Q 043667          152 VSSLPALCKLKIGGCKKVV--WRSA-----TDHLGSQNSVVCRDTS  190 (387)
Q Consensus       152 ~~~~~~L~~L~i~~~~~~~--~~~~-----~~~~~~L~~L~l~~~~  190 (387)
                      .+.+|.|+.|++..+.-..  .++.     ...+++|+.|.+...+
T Consensus       267 ~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~  312 (505)
T KOG3207|consen  267 VGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN  312 (505)
T ss_pred             cccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence            5667788888777654333  2222     3457888888887654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.13  E-value=8.5e-07  Score=76.55  Aligned_cols=36  Identities=14%  Similarity=0.079  Sum_probs=16.7

Q ss_pred             ccCCCCcceEEEcCccceeEecccccCCCCcEEeccC
Q 043667          152 VSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRD  188 (387)
Q Consensus       152 ~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~  188 (387)
                      ..-.|.++.|+++.+...++.+ +..+++|+.|++++
T Consensus       303 vKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~  338 (490)
T KOG1259|consen  303 VKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSG  338 (490)
T ss_pred             hhhccceeEEeccccceeeehh-hhhcccceEeeccc
Confidence            3334555555555443333222 44455555555554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.06  E-value=2.2e-06  Score=74.02  Aligned_cols=126  Identities=13%  Similarity=0.163  Sum_probs=67.1

Q ss_pred             CCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcC
Q 043667          231 CSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALP  310 (387)
Q Consensus       231 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~  310 (387)
                      ..|+++++++ +.+..+.+     +.+-+    |+++.|+++++ .+..+.. ++.+++|+.||+++ +.+..+.  ++.
T Consensus       284 q~LtelDLS~-N~I~~iDE-----SvKL~----Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~-N~Ls~~~--Gwh  348 (490)
T KOG1259|consen  284 QELTELDLSG-NLITQIDE-----SVKLA----PKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSG-NLLAECV--GWH  348 (490)
T ss_pred             hhhhhccccc-cchhhhhh-----hhhhc----cceeEEecccc-ceeeehh-hhhcccceEeeccc-chhHhhh--hhH
Confidence            4466666665 33443332     22222    66777776653 3444432 55666667777766 3443332  222


Q ss_pred             ---CCceEEEeccCCCCCccccccccCCCCCcceEecccCcccccccCC---CCCCCccEEeecCCccccccc
Q 043667          311 ---SKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGV---QLPPSLKRLDIWNCDNIRTLT  377 (387)
Q Consensus       311 ---~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~C~~l~~l~  377 (387)
                         -+.++|.+++ +.++++. ++...-+  |..||+++ +++..+...   +.+|.|+.+.+.+.| ++.+|
T Consensus       349 ~KLGNIKtL~La~-N~iE~LS-GL~KLYS--LvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~v  415 (490)
T KOG1259|consen  349 LKLGNIKTLKLAQ-NKIETLS-GLRKLYS--LVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNP-LAGSV  415 (490)
T ss_pred             hhhcCEeeeehhh-hhHhhhh-hhHhhhh--heeccccc-cchhhHHHhcccccccHHHHHhhcCCC-ccccc
Confidence               4566666665 3455553 2333444  77777777 455443322   566777777777744 44444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=1.2e-06  Score=79.38  Aligned_cols=89  Identities=16%  Similarity=0.195  Sum_probs=43.0

Q ss_pred             ccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcc--cccCCCCCccEEEecCCCCceecC
Q 043667          228 QDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLP--QSSLSLSSLREIDIYDCSSLVSFP  305 (387)
Q Consensus       228 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~--~~~~~~~~L~~L~l~~c~~l~~~~  305 (387)
                      ..+|+|+.|.++++..+.....     ....    +..|++|+|++++ +-+++  ...+.++.|+.|+++.| .+.++.
T Consensus       219 ~~fPsl~~L~L~~N~~~~~~~~-----~~~i----~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~t-gi~si~  287 (505)
T KOG3207|consen  219 LTFPSLEVLYLEANEIILIKAT-----STKI----LQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSST-GIASIA  287 (505)
T ss_pred             HhCCcHHHhhhhcccccceecc-----hhhh----hhHHhhccccCCc-ccccccccccccccchhhhhcccc-Ccchhc
Confidence            3466777777766432211100     1111    2566777776644 33333  23456666666666653 343332


Q ss_pred             --CC------CcCCCceEEEeccCCCCCccc
Q 043667          306 --EV------ALPSKLKKIEIRKCDALKSLP  328 (387)
Q Consensus       306 --~~------~~~~~L~~L~l~~c~~l~~l~  328 (387)
                        ..      ...++|+.|++.. +++.+++
T Consensus       288 ~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~  317 (505)
T KOG3207|consen  288 EPDVESLDKTHTFPKLEYLNISE-NNIRDWR  317 (505)
T ss_pred             CCCccchhhhcccccceeeeccc-Ccccccc
Confidence              11      1126677777765 3344443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.01  E-value=6.6e-06  Score=55.00  Aligned_cols=56  Identities=27%  Similarity=0.441  Sum_probs=31.8

Q ss_pred             CCCcEEEEcCcCCCCCCC-ccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCC
Q 043667            6 KNLEQFCISGYRGAKFPT-WFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGM   64 (387)
Q Consensus         6 ~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~   64 (387)
                      ++|++|+++++....+|. ++..  +++|++|++++| .++.+++  +..+++|++|+++++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~--l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSN--LPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTT--GTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcC--CCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence            356666666666655543 3443  666666666653 4555553  555666666666655

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.00  E-value=8.3e-06  Score=66.76  Aligned_cols=124  Identities=20%  Similarity=0.226  Sum_probs=44.1

Q ss_pred             cCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCC
Q 043667          229 DICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVA  308 (387)
Q Consensus       229 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~  308 (387)
                      +...+++|++.++ .+..+..      +..   .+.+|+.|++++| .++.+. ++..+++|+.|++++ +.++++....
T Consensus        17 n~~~~~~L~L~~n-~I~~Ie~------L~~---~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l   83 (175)
T PF14580_consen   17 NPVKLRELNLRGN-QISTIEN------LGA---TLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSN-NRISSISEGL   83 (175)
T ss_dssp             --------------------S--------T---T-TT--EEE-TTS---S--T-T----TT--EEE--S-S---S-CHHH
T ss_pred             ccccccccccccc-ccccccc------hhh---hhcCCCEEECCCC-CCcccc-CccChhhhhhcccCC-CCCCccccch
Confidence            4567899999984 4554421      221   1278999999985 577775 577889999999998 7888876421


Q ss_pred             --cCCCceEEEeccCCCCCcccc--ccccCCCCCcceEecccCcccccccCC-----CCCCCccEEeecC
Q 043667          309 --LPSKLKKIEIRKCDALKSLPE--AWMCDTNSSLETLKIERCRSLTYIAGV-----QLPPSLKRLDIWN  369 (387)
Q Consensus       309 --~~~~L~~L~l~~c~~l~~l~~--~~~~~~~~~L~~L~l~~c~~l~~~~~~-----~~~~~L~~L~l~~  369 (387)
                        ..|+|++|.+++ +.+.++.+  .+..+++  |+.|++.++| +++-+..     ...|+|+.||-..
T Consensus        84 ~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~--L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   84 DKNLPNLQELYLSN-NKISDLNELEPLSSLPK--LRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             HHH-TT--EEE-TT-S---SCCCCGGGGG-TT----EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             HHhCCcCCEEECcC-CcCCChHHhHHHHcCCC--cceeeccCCc-ccchhhHHHHHHHHcChhheeCCEE
Confidence              238999999987 55766543  3444566  9999999964 4433221     2357788887543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.95  E-value=7.9e-07  Score=86.15  Aligned_cols=233  Identities=21%  Similarity=0.240  Sum_probs=109.7

Q ss_pred             CCCccEEEeccCcccc-----ccccCCCCcceEEEcCc-ccee-----EecccccCCCCcEEeccCCCCcccccCCC-CC
Q 043667          134 LPALEMLVIEACKELS-----VSVSSLPALCKLKIGGC-KKVV-----WRSATDHLGSQNSVVCRDTSNQVFLAGPL-KP  201 (387)
Q Consensus       134 ~~~L~~L~l~~~~~l~-----~~~~~~~~L~~L~i~~~-~~~~-----~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~  201 (387)
                      ++.|+.+.+.+|..+.     .....+++|+.|++.++ ....     .......+++|+.+++..+..+.+..... ..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            5666666666665443     23445667777776652 2111     11122334666666666665433222111 22


Q ss_pred             CCccccceeEEEcCCCCcccccc-cccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCC---CC
Q 043667          202 QLPKLEELILSTKEQTYIWKSHD-GLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCK---GL  277 (387)
Q Consensus       202 ~l~~L~~l~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~---~l  277 (387)
                      .+++|++  +.+..|..++.... .+...+++|++|++++|..+.+..       +..+...+++++.|.+..+.   .+
T Consensus       267 ~c~~L~~--L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~-------l~~~~~~c~~l~~l~~~~~~~c~~l  337 (482)
T KOG1947|consen  267 RCPNLET--LSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSG-------LEALLKNCPNLRELKLLSLNGCPSL  337 (482)
T ss_pred             hCCCcce--EccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHH-------HHHHHHhCcchhhhhhhhcCCCccH
Confidence            3556666  66555554332111 122346667777776666653221       11111123555554443333   22


Q ss_pred             CCcc--cccCCC-CCccEEEecCCCCceecCCCCcC-CCce-EEEeccCCCC-CccccccccCCCCCcceEecccCcccc
Q 043667          278 VKLP--QSSLSL-SSLREIDIYDCSSLVSFPEVALP-SKLK-KIEIRKCDAL-KSLPEAWMCDTNSSLETLKIERCRSLT  351 (387)
Q Consensus       278 ~~~~--~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~-~~L~-~L~l~~c~~l-~~l~~~~~~~~~~~L~~L~l~~c~~l~  351 (387)
                      +...  ...... ..+..+.+.+|++++.+...... .... .+.+.+|+.+ ..+.........  ++.|++..|...+
T Consensus       338 ~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~--l~~L~l~~~~~~t  415 (482)
T KOG1947|consen  338 TDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDS--LRVLNLSDCRLVT  415 (482)
T ss_pred             HHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCc--cceEecccCcccc
Confidence            2211  001111 13444444555444443322111 1112 4555666666 333322222333  7888888887666


Q ss_pred             cccCC--CC-CCCccEEeecCCccccccc
Q 043667          352 YIAGV--QL-PPSLKRLDIWNCDNIRTLT  377 (387)
Q Consensus       352 ~~~~~--~~-~~~L~~L~l~~C~~l~~l~  377 (387)
                      .-...  .. ..+++.+++.+|+.++.-.
T Consensus       416 ~~~l~~~~~~~~~~~~l~~~~~~~~~~~~  444 (482)
T KOG1947|consen  416 DKGLRCLADSCSNLKDLDLSGCRVITLKS  444 (482)
T ss_pred             ccchHHHhhhhhccccCCccCcccccchh
Confidence            54333  11 4567778888877766554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.94  E-value=1.9e-05  Score=52.74  Aligned_cols=54  Identities=28%  Similarity=0.468  Sum_probs=21.5

Q ss_pred             CccEEEeccCCCCCCccc-ccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEecc
Q 043667          265 RLEYLRLRYCKGLVKLPQ-SSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRK  320 (387)
Q Consensus       265 ~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~  320 (387)
                      +|++|++++| +++.++. .+..+++|+.|++++ +.++.++...+.  ++|++|++++
T Consensus         2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~   58 (61)
T PF13855_consen    2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSN   58 (61)
T ss_dssp             TESEEEETSS-TESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETS
T ss_pred             cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcC
Confidence            3444444443 3333332 233444444444443 334444433322  4444444443

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.90  E-value=8.8e-07  Score=85.82  Aligned_cols=210  Identities=21%  Similarity=0.269  Sum_probs=102.7

Q ss_pred             CCCCcceEEEcCcccee---EecccccCCCCcEEeccCC-CCccccc---CCCCCCCccccceeEEEcCCCCcccccccc
Q 043667          154 SLPALCKLKIGGCKKVV---WRSATDHLGSQNSVVCRDT-SNQVFLA---GPLKPQLPKLEELILSTKEQTYIWKSHDGL  226 (387)
Q Consensus       154 ~~~~L~~L~i~~~~~~~---~~~~~~~~~~L~~L~l~~~-~~l~~~~---~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~  226 (387)
                      .++.|+.+.+.++..+.   ........++|++|++++| ......+   ......+++|++  +.+..+..++......
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~--l~l~~~~~isd~~l~~  263 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKS--LDLSGCGLVTDIGLSA  263 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCc--cchhhhhccCchhHHH
Confidence            45677777777665555   2234455677777777663 2211111   001333455666  6666665554333222


Q ss_pred             cc-cCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCC--cccccCCCCCccEEEecCC---CC
Q 043667          227 LQ-DICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVK--LPQSSLSLSSLREIDIYDC---SS  300 (387)
Q Consensus       227 l~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~--~~~~~~~~~~L~~L~l~~c---~~  300 (387)
                      ++ .+++|++|.+.+|..+.+.       ++..+...++.|++|++++|..+++  +......+++++.+.+..+   ..
T Consensus       264 l~~~c~~L~~L~l~~c~~lt~~-------gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~  336 (482)
T KOG1947|consen  264 LASRCPNLETLSLSNCSNLTDE-------GLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPS  336 (482)
T ss_pred             HHhhCCCcceEccCCCCccchh-------HHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCcc
Confidence            22 3667777776666653332       2333333446777777777766543  2222334565555444333   33


Q ss_pred             ceecCCCCcC---C-CceEEEeccCCCCCccccccccCCCCCcc-eEecccCcccc-cccCC-CCCCCccEEeecCCccc
Q 043667          301 LVSFPEVALP---S-KLKKIEIRKCDALKSLPEAWMCDTNSSLE-TLKIERCRSLT-YIAGV-QLPPSLKRLDIWNCDNI  373 (387)
Q Consensus       301 l~~~~~~~~~---~-~L~~L~l~~c~~l~~l~~~~~~~~~~~L~-~L~l~~c~~l~-~~~~~-~~~~~L~~L~l~~C~~l  373 (387)
                      ++.+......   . .+..+.+.+|++++++.-.......  .. .+.+.+|+.++ .+..- ....+++.|+++.|...
T Consensus       337 l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~--~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~  414 (482)
T KOG1947|consen  337 LTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISD--LGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLV  414 (482)
T ss_pred             HHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccC--cchHHHhcCCcccchHHHHHhccCCccceEecccCccc
Confidence            4433322211   1 4566666666666554422111111  22 45566666662 22211 12223667777766654


Q ss_pred             c
Q 043667          374 R  374 (387)
Q Consensus       374 ~  374 (387)
                      +
T Consensus       415 t  415 (482)
T KOG1947|consen  415 T  415 (482)
T ss_pred             c
Confidence            3

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.65  E-value=2.6e-06  Score=75.06  Aligned_cols=198  Identities=18%  Similarity=0.164  Sum_probs=100.0

Q ss_pred             ccccCCCCcceEEEcCcccee-----EecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccc
Q 043667          150 VSVSSLPALCKLKIGGCKKVV-----WRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHD  224 (387)
Q Consensus       150 ~~~~~~~~L~~L~i~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~  224 (387)
                      ..+..+|+|++++++++..-.     +-..+.++.+|++|.+.+|.--..-.....   ..|.+  ++..          
T Consensus        86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~---~al~~--l~~~----------  150 (382)
T KOG1909|consen   86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG---RALFE--LAVN----------  150 (382)
T ss_pred             HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH---HHHHH--HHHH----------
Confidence            355667788888888753221     223455677888888887642111100000   01111  1100          


Q ss_pred             cccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCC----CCCCcccccCCCCCccEEEecCCCC
Q 043667          225 GLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCK----GLVKLPQSSLSLSSLREIDIYDCSS  300 (387)
Q Consensus       225 ~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~----~l~~~~~~~~~~~~L~~L~l~~c~~  300 (387)
                      ...++-+.|+++..+. +++.+.+.......++..    +.|+.+.+..+.    .++.+...+..+++|+.|++.+ +-
T Consensus       151 kk~~~~~~Lrv~i~~r-Nrlen~ga~~~A~~~~~~----~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~D-Nt  224 (382)
T KOG1909|consen  151 KKAASKPKLRVFICGR-NRLENGGATALAEAFQSH----PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRD-NT  224 (382)
T ss_pred             hccCCCcceEEEEeec-cccccccHHHHHHHHHhc----cccceEEEecccccCchhHHHHHHHHhCCcceeeeccc-ch
Confidence            0023446677777766 455555444333344444    777777776532    1122333456777788888776 33


Q ss_pred             ceecCCC------CcCCCceEEEeccCCCCCc-----cccccccCCCCCcceEecccCcccccccC-----C-CCCCCcc
Q 043667          301 LVSFPEV------ALPSKLKKIEIRKCDALKS-----LPEAWMCDTNSSLETLKIERCRSLTYIAG-----V-QLPPSLK  363 (387)
Q Consensus       301 l~~~~~~------~~~~~L~~L~l~~c~~l~~-----l~~~~~~~~~~~L~~L~l~~c~~l~~~~~-----~-~~~~~L~  363 (387)
                      ++.-...      ...+.|++|++++|. ++.     +...+.. ..|.|+.+.+.+| .++.=..     . ..-|.|+
T Consensus       225 ft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~-~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~  301 (382)
T KOG1909|consen  225 FTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKE-SAPSLEVLELAGN-EITRDAALALAACMAEKPDLE  301 (382)
T ss_pred             hhhHHHHHHHHHhcccchheeecccccc-cccccHHHHHHHHhc-cCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhH
Confidence            3322111      112567777777775 322     1111111 1244888887775 4442110     0 2356777


Q ss_pred             EEeecCCc
Q 043667          364 RLDIWNCD  371 (387)
Q Consensus       364 ~L~l~~C~  371 (387)
                      +|++++|.
T Consensus       302 kLnLngN~  309 (382)
T KOG1909|consen  302 KLNLNGNR  309 (382)
T ss_pred             HhcCCccc
Confidence            88887754

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.60  E-value=2.5e-06  Score=79.80  Aligned_cols=143  Identities=19%  Similarity=0.278  Sum_probs=100.9

Q ss_pred             cccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCC
Q 043667          219 IWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDC  298 (387)
Q Consensus       219 ~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c  298 (387)
                      +..+|.. ...+..|+.++++. +.+...+..     +..     --|+.|-+++ ++++.+|+.++..+.|..|+++. 
T Consensus       110 ~r~ip~~-i~~L~~lt~l~ls~-NqlS~lp~~-----lC~-----lpLkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~-  175 (722)
T KOG0532|consen  110 IRTIPEA-ICNLEALTFLDLSS-NQLSHLPDG-----LCD-----LPLKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSK-  175 (722)
T ss_pred             ceecchh-hhhhhHHHHhhhcc-chhhcCChh-----hhc-----CcceeEEEec-CccccCCcccccchhHHHhhhhh-
Confidence            3344544 45677788888876 455555543     221     4677777776 66888888888888888899887 


Q ss_pred             CCceecCCC-CcCCCceEEEeccCCCCCccccccccCCCCCcceEecccCcccccccCC-CCCCCccEEeecCCcccccc
Q 043667          299 SSLVSFPEV-ALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGV-QLPPSLKRLDIWNCDNIRTL  376 (387)
Q Consensus       299 ~~l~~~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~C~~l~~l  376 (387)
                      +++..++.. +-..+|+.+.+.. +.+.++|..+..++   |.+||+++ +++..+|.. ..+..|++|.+.+ +-|++=
T Consensus       176 nei~slpsql~~l~slr~l~vrR-n~l~~lp~El~~Lp---Li~lDfSc-Nkis~iPv~fr~m~~Lq~l~Len-NPLqSP  249 (722)
T KOG0532|consen  176 NEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSLP---LIRLDFSC-NKISYLPVDFRKMRHLQVLQLEN-NPLQSP  249 (722)
T ss_pred             hhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCCc---eeeeeccc-Cceeecchhhhhhhhheeeeecc-CCCCCC
Confidence            466666532 2227888888876 55888887765333   88999976 789999987 6678889998886 558888


Q ss_pred             ccccc
Q 043667          377 TVEEG  381 (387)
Q Consensus       377 ~~~~~  381 (387)
                      |+.++
T Consensus       250 PAqIC  254 (722)
T KOG0532|consen  250 PAQIC  254 (722)
T ss_pred             hHHHH
Confidence            87763

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.58  E-value=7.1e-05  Score=46.00  Aligned_cols=32  Identities=28%  Similarity=0.453  Sum_probs=15.8

Q ss_pred             CccEEEeecCCCCCCCCC-cCCcCCCcEEEecCC
Q 043667           32 NLVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGM   64 (387)
Q Consensus        32 ~L~~L~l~~c~~~~~l~~-~~~l~~L~~L~l~~~   64 (387)
                      +|++|+++++ .++++|. +++|++|+.|+++++
T Consensus         2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS
T ss_pred             cceEEEccCC-CCcccCchHhCCCCCCEEEecCC
Confidence            4555555553 4445554 555555555555555

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.49  E-value=0.00013  Score=68.91  Aligned_cols=101  Identities=26%  Similarity=0.361  Sum_probs=42.4

Q ss_pred             CCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCCCccccccccCCCCCcceEe
Q 043667          264 CRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLK  343 (387)
Q Consensus       264 ~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~  343 (387)
                      ++|+.|++++ ..+..+|..+.....|+++.+++...+..........++..+.+.+ +.+..++..+.....  ++.|+
T Consensus       186 ~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~l~~--l~~L~  261 (394)
T COG4886         186 SNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDLPESIGNLSN--LETLD  261 (394)
T ss_pred             hhhhheeccC-CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-ceeeeccchhccccc--cceec
Confidence            4555555554 2344454433333335555555422222222111123344443322 223333333333444  55555


Q ss_pred             cccCcccccccCCCCCCCccEEeecC
Q 043667          344 IERCRSLTYIAGVQLPPSLKRLDIWN  369 (387)
Q Consensus       344 l~~c~~l~~~~~~~~~~~L~~L~l~~  369 (387)
                      +++ +.+++++..+...+++.|++++
T Consensus       262 ~s~-n~i~~i~~~~~~~~l~~L~~s~  286 (394)
T COG4886         262 LSN-NQISSISSLGSLTNLRELDLSG  286 (394)
T ss_pred             ccc-ccccccccccccCccCEEeccC
Confidence            555 2455554433445555555555

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.47  E-value=0.00013  Score=44.85  Aligned_cols=42  Identities=24%  Similarity=0.351  Sum_probs=33.6

Q ss_pred             CCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCc
Q 043667            6 KNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSV   50 (387)
Q Consensus         6 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~   50 (387)
                      ++|++|+++++.+..+|..++.  +++|++|++++| .+++++.+
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~--l~~L~~L~l~~N-~i~~i~~l   42 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSN--LPNLETLNLSNN-PISDISPL   42 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTT--CTTSSEEEETSS-CCSBEGGG
T ss_pred             CcceEEEccCCCCcccCchHhC--CCCCCEEEecCC-CCCCCcCC
Confidence            5799999999999999887776  999999999997 66666554

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.44  E-value=0.00012  Score=69.02  Aligned_cols=55  Identities=25%  Similarity=0.358  Sum_probs=24.2

Q ss_pred             CCcEEEEcCcCCCCCCCccCCccCC-CccEEEeecCCCCCCCC-CcCCcCCCcEEEecCC
Q 043667            7 NLEQFCISGYRGAKFPTWFGDSSFS-NLVTLKFEYCGMCPTLP-SVGQLPSLKHLAVCGM   64 (387)
Q Consensus         7 ~L~~L~l~~~~~~~~p~~~~~~~l~-~L~~L~l~~c~~~~~l~-~~~~l~~L~~L~l~~~   64 (387)
                      +++.+.+.++.+..+|...+.  +. +|+.|+++++ .+..+| .++.+++|+.|++.++
T Consensus       117 ~l~~L~l~~n~i~~i~~~~~~--~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886         117 NLTSLDLDNNNITDIPPLIGL--LKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             ceeEEecCCcccccCcccccc--chhhccccccccc-chhhhhhhhhccccccccccCCc
Confidence            344444444444444444432  32 4444444442 444443 3444444444444444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.36  E-value=2.2e-05  Score=69.41  Aligned_cols=15  Identities=13%  Similarity=0.188  Sum_probs=7.6

Q ss_pred             cCCcCCCcEEEecCC
Q 043667           50 VGQLPSLKHLAVCGM   64 (387)
Q Consensus        50 ~~~l~~L~~L~l~~~   64 (387)
                      ++++..|++|.+.+|
T Consensus       116 l~s~~~L~eL~L~N~  130 (382)
T KOG1909|consen  116 LSSCTDLEELYLNNC  130 (382)
T ss_pred             HHhccCHHHHhhhcC
Confidence            344555555555555

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.34  E-value=5.9e-05  Score=75.23  Aligned_cols=107  Identities=21%  Similarity=0.238  Sum_probs=63.9

Q ss_pred             CCCcEEEEcCcCCC--CCCCccCCccCCCccEEEeecCCCCC-CCCC-cCCcCCCcEEEecCCCCceEeCccccCCCccc
Q 043667            6 KNLEQFCISGYRGA--KFPTWFGDSSFSNLVTLKFEYCGMCP-TLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAI   81 (387)
Q Consensus         6 ~~L~~L~l~~~~~~--~~p~~~~~~~l~~L~~L~l~~c~~~~-~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~   81 (387)
                      .+||+|+++|....  ..|..++. .||+|++|.+.+-.... ++.. ..++|||+.||++++ +++.+..       ..
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~-~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~G-------IS  192 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGT-MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNLSG-------IS  192 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhh-hCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCcHH-------Hh
Confidence            47888888874432  12333443 58888888887732211 1111 567888888888888 6665521       24


Q ss_pred             CCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcc
Q 043667           82 PFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSK  125 (387)
Q Consensus        82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~  125 (387)
                      .+++|+.|.+.++.-......    ..+-.+.+|+.|+++....
T Consensus       193 ~LknLq~L~mrnLe~e~~~~l----~~LF~L~~L~vLDIS~~~~  232 (699)
T KOG3665|consen  193 RLKNLQVLSMRNLEFESYQDL----IDLFNLKKLRVLDISRDKN  232 (699)
T ss_pred             ccccHHHHhccCCCCCchhhH----HHHhcccCCCeeecccccc
Confidence            577777777776543322211    2223577888888876544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.28  E-value=0.00016  Score=72.28  Aligned_cols=105  Identities=17%  Similarity=0.184  Sum_probs=54.2

Q ss_pred             ccccceeEEEcCCCCcc-cccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCccc
Q 043667          204 PKLEELILSTKEQTYIW-KSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQ  282 (387)
Q Consensus       204 ~~L~~l~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~  282 (387)
                      .+|++  +++.+...+. .++..+..-+|+|++|.+.+-....    +    .|..+...||+|..|+|+++ +++.+ .
T Consensus       122 ~nL~~--LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~----~----dF~~lc~sFpNL~sLDIS~T-nI~nl-~  189 (699)
T KOG3665|consen  122 QNLQH--LDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN----D----DFSQLCASFPNLRSLDISGT-NISNL-S  189 (699)
T ss_pred             Hhhhh--cCccccchhhccHHHHHhhhCcccceEEecCceecc----h----hHHHHhhccCccceeecCCC-CccCc-H
Confidence            45555  6665543332 2222222347777777777632211    1    13333334477777777774 35555 4


Q ss_pred             ccCCCCCccEEEecCCCCceecC-CC-Cc-CCCceEEEeccC
Q 043667          283 SSLSLSSLREIDIYDCSSLVSFP-EV-AL-PSKLKKIEIRKC  321 (387)
Q Consensus       283 ~~~~~~~L~~L~l~~c~~l~~~~-~~-~~-~~~L~~L~l~~c  321 (387)
                      +++++++|+.|.+.+.. +.... .. -+ ..+|++|||+.-
T Consensus       190 GIS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  190 GISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRD  230 (699)
T ss_pred             HHhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeecccc
Confidence            56677777777765532 22111 00 11 167777777753

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.03  E-value=6.8e-05  Score=70.50  Aligned_cols=187  Identities=21%  Similarity=0.230  Sum_probs=119.6

Q ss_pred             EEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecC
Q 043667          161 LKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDW  240 (387)
Q Consensus       161 L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  240 (387)
                      .+++.+..-+++..+..|..|+.+.+..+. ...++.. ...+..|..  +.++.. .+..+|..+ -.+ -|+.|.+++
T Consensus        80 aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~-i~~L~~lt~--l~ls~N-qlS~lp~~l-C~l-pLkvli~sN  152 (722)
T KOG0532|consen   80 ADLSRNRFSELPEEACAFVSLESLILYHNC-IRTIPEA-ICNLEALTF--LDLSSN-QLSHLPDGL-CDL-PLKVLIVSN  152 (722)
T ss_pred             hhccccccccCchHHHHHHHHHHHHHHhcc-ceecchh-hhhhhHHHH--hhhccc-hhhcCChhh-hcC-cceeEEEec
Confidence            344444444455555556666666665421 2222222 234445444  555543 344555542 223 488888887


Q ss_pred             CCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcCCCceEEEecc
Q 043667          241 CPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRK  320 (387)
Q Consensus       241 ~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~  320 (387)
                       ++++.+|++     ++-.    +.|..|+.+.| .+..+|..+..+.+|+.|.++. +.+.++|.....-.|..||++ 
T Consensus       153 -Nkl~~lp~~-----ig~~----~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrR-n~l~~lp~El~~LpLi~lDfS-  219 (722)
T KOG0532|consen  153 -NKLTSLPEE-----IGLL----PTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSLPLIRLDFS-  219 (722)
T ss_pred             -CccccCCcc-----cccc----hhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCCceeeeecc-
Confidence             677777765     3333    78888998875 4777888888899999999987 567777755444568899986 


Q ss_pred             CCCCCccccccccCCCCCcceEecccCcccccccCC----CCCCCccEEeecCC
Q 043667          321 CDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGV----QLPPSLKRLDIWNC  370 (387)
Q Consensus       321 c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~----~~~~~L~~L~l~~C  370 (387)
                      |+++..+|..+..+..  |++|.+.+. -++.-|..    +..-=-++|++.-|
T Consensus       220 cNkis~iPv~fr~m~~--Lq~l~LenN-PLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  220 CNKISYLPVDFRKMRH--LQVLQLENN-PLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             cCceeecchhhhhhhh--heeeeeccC-CCCCChHHHHhccceeeeeeecchhc
Confidence            6889999988877888  999999874 56554433    22122377777777

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.02  E-value=9e-06  Score=78.35  Aligned_cols=76  Identities=24%  Similarity=0.323  Sum_probs=39.8

Q ss_pred             CCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcC-CCceEEEeccCCCCCccccccccCCCCCcceE
Q 043667          264 CRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALP-SKLKKIEIRKCDALKSLPEAWMCDTNSSLETL  342 (387)
Q Consensus       264 ~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L  342 (387)
                      +.++.|++++ ++++++. .+..++.|+.||+++ +.++.+|.-+.- ..|..|.+.+ +-++++- ++..+.+  |+.|
T Consensus       187 ~ale~LnLsh-Nk~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~L~~L~lrn-N~l~tL~-gie~Lks--L~~L  259 (1096)
T KOG1859|consen  187 PALESLNLSH-NKFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCKLQLLNLRN-NALTTLR-GIENLKS--LYGL  259 (1096)
T ss_pred             HHhhhhccch-hhhhhhH-HHHhccccccccccc-chhccccccchhhhhheeeeecc-cHHHhhh-hHHhhhh--hhcc
Confidence            5666666665 3344444 344566666666665 455555533222 4466666655 3344442 2333455  6666


Q ss_pred             eccc
Q 043667          343 KIER  346 (387)
Q Consensus       343 ~l~~  346 (387)
                      |+++
T Consensus       260 Dlsy  263 (1096)
T KOG1859|consen  260 DLSY  263 (1096)
T ss_pred             chhH
Confidence            6666

>PLN03150 hypothetical protein; Provisional

Probab=96.95  E-value=0.0022  Score=64.12  Aligned_cols=108  Identities=14%  Similarity=0.103  Sum_probs=67.5

Q ss_pred             ccEEEeccCCCCCCcccccCCCCCccEEEecCCCCce-ecCCC-CcCCCceEEEeccCCCCCccccccccCCCCCcceEe
Q 043667          266 LEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLV-SFPEV-ALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLK  343 (387)
Q Consensus       266 L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~  343 (387)
                      ++.|++.++.--..+|..+..+++|+.|+++++ .+. .+|.. +..++|+.|+++++..-..+|..+..+.+  |+.|+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~--L~~L~  496 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS--LRILN  496 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCC--CCEEE
Confidence            667777765433356667777888888888874 443 44422 22378888888876544567777766777  88888


Q ss_pred             cccCcccccccCC--CCCCCccEEeecCCcccccc
Q 043667          344 IERCRSLTYIAGV--QLPPSLKRLDIWNCDNIRTL  376 (387)
Q Consensus       344 l~~c~~l~~~~~~--~~~~~L~~L~l~~C~~l~~l  376 (387)
                      ++++.--..+|..  ....++..+++.+++.+-..
T Consensus       497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~  531 (623)
T PLN03150        497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI  531 (623)
T ss_pred             CcCCcccccCChHHhhccccCceEEecCCccccCC
Confidence            8886433345543  22345567777765544433

>PLN03150 hypothetical protein; Provisional

Probab=96.73  E-value=0.004  Score=62.23  Aligned_cols=105  Identities=17%  Similarity=0.104  Sum_probs=53.2

Q ss_pred             ccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCC-CcCC
Q 043667          233 LKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEV-ALPS  311 (387)
Q Consensus       233 L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~  311 (387)
                      ++.|+++++.--..++.     .+..+    ++|+.|+++++.--..+|..+..+++|+.|+++++.--..+|.. +..+
T Consensus       420 v~~L~L~~n~L~g~ip~-----~i~~L----~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~  490 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPN-----DISKL----RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT  490 (623)
T ss_pred             EEEEECCCCCccccCCH-----HHhCC----CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCC
Confidence            55666665433233333     24444    66666666664432355655666666777776664222233321 1225


Q ss_pred             CceEEEeccCCCCCccccccccC-CCCCcceEecccCc
Q 043667          312 KLKKIEIRKCDALKSLPEAWMCD-TNSSLETLKIERCR  348 (387)
Q Consensus       312 ~L~~L~l~~c~~l~~l~~~~~~~-~~~~L~~L~l~~c~  348 (387)
                      +|+.|+++++..-..+|..+... ..  +..+++.+++
T Consensus       491 ~L~~L~Ls~N~l~g~iP~~l~~~~~~--~~~l~~~~N~  526 (623)
T PLN03150        491 SLRILNLNGNSLSGRVPAALGGRLLH--RASFNFTDNA  526 (623)
T ss_pred             CCCEEECcCCcccccCChHHhhcccc--CceEEecCCc
Confidence            66677666655334555443221 22  4555555543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.63  E-value=0.0068  Score=49.97  Aligned_cols=81  Identities=20%  Similarity=0.292  Sum_probs=53.1

Q ss_pred             CCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccC--CccccccCcCCC
Q 043667           30 FSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAML--GWEDWIPLRSGQ  107 (387)
Q Consensus        30 l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~l~~~~~~~~~~  107 (387)
                      .-+...+|++++ .+..++.+..+++|..|.+.++ .+..|....     ...+|+|+.|.+.+..  .+.+.      +
T Consensus        41 ~d~~d~iDLtdN-dl~~l~~lp~l~rL~tLll~nN-rIt~I~p~L-----~~~~p~l~~L~LtnNsi~~l~dl------~  107 (233)
T KOG1644|consen   41 LDQFDAIDLTDN-DLRKLDNLPHLPRLHTLLLNNN-RITRIDPDL-----DTFLPNLKTLILTNNSIQELGDL------D  107 (233)
T ss_pred             ccccceeccccc-chhhcccCCCccccceEEecCC-cceeeccch-----hhhccccceEEecCcchhhhhhc------c
Confidence            446788888884 7778888888999999999888 777776653     2346777777777522  12222      2


Q ss_pred             CccCCCCcceEeeccC
Q 043667          108 GVEGFPKLRELHILRC  123 (387)
Q Consensus       108 ~i~~~~~L~~L~l~~~  123 (387)
                      ....+|.|+.|.+-++
T Consensus       108 pLa~~p~L~~Ltll~N  123 (233)
T KOG1644|consen  108 PLASCPKLEYLTLLGN  123 (233)
T ss_pred             hhccCCccceeeecCC
Confidence            2234566666666544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.56  E-value=0.00057  Score=64.89  Aligned_cols=81  Identities=20%  Similarity=0.279  Sum_probs=48.4

Q ss_pred             CCCCCCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCccc
Q 043667            2 LEPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAI   81 (387)
Q Consensus         2 ~~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~   81 (387)
                      +..+.+|+.+++.++.+.++...+..  +++|++|++++ +.++.+..+..++.|+.|.+.++ .+..+..-       .
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~--~~~L~~L~ls~-N~I~~i~~l~~l~~L~~L~l~~N-~i~~~~~~-------~  159 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSS--LVNLQVLDLSF-NKITKLEGLSTLTLLKELNLSGN-LISDISGL-------E  159 (414)
T ss_pred             cccccceeeeeccccchhhcccchhh--hhcchheeccc-cccccccchhhccchhhheeccC-cchhccCC-------c
Confidence            34556667777776666665543333  66777777776 36666666666777777777766 44444321       2


Q ss_pred             CCCCcceeeccc
Q 043667           82 PFPRLETLRFDA   93 (387)
Q Consensus        82 ~~~~L~~L~l~~   93 (387)
                      .++.|+.+++++
T Consensus       160 ~l~~L~~l~l~~  171 (414)
T KOG0531|consen  160 SLKSLKLLDLSY  171 (414)
T ss_pred             cchhhhcccCCc
Confidence            245555555554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.12  E-value=0.0015  Score=56.92  Aligned_cols=55  Identities=16%  Similarity=0.129  Sum_probs=24.6

Q ss_pred             CCCccEEEeccCc-----cccccccCCCCcceEEEcCccceeEeccc-ccCCCCcEEeccC
Q 043667          134 LPALEMLVIEACK-----ELSVSVSSLPALCKLKIGGCKKVVWRSAT-DHLGSQNSVVCRD  188 (387)
Q Consensus       134 ~~~L~~L~l~~~~-----~l~~~~~~~~~L~~L~i~~~~~~~~~~~~-~~~~~L~~L~l~~  188 (387)
                      ++.++.+++.+..     .+...+.++|.|+.|+++.+......... -...+|+.|.+.+
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg  130 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG  130 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcC
Confidence            4455555554432     22234455566666666554333322111 1233555555554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.03  E-value=0.0018  Score=56.48  Aligned_cols=226  Identities=16%  Similarity=0.179  Sum_probs=109.4

Q ss_pred             CCcCCCcEEEecCCCCceEeCc-cccCCCcccCCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccc--
Q 043667           51 GQLPSLKHLAVCGMTSVKRLGS-EFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQ--  127 (387)
Q Consensus        51 ~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~--  127 (387)
                      +...-++.|.+.+| .+...+. ..+    ......++++++.+ ..+.+|...+  .-.+.+|.|+.|+++.+ .+.  
T Consensus        42 ~s~ra~ellvln~~-~id~~gd~~~~----~~~~~~v~elDL~~-N~iSdWseI~--~ile~lP~l~~LNls~N-~L~s~  112 (418)
T KOG2982|consen   42 SSLRALELLVLNGS-IIDNEGDVMLF----GSSVTDVKELDLTG-NLISDWSEIG--AILEQLPALTTLNLSCN-SLSSD  112 (418)
T ss_pred             ccccchhhheecCC-CCCcchhHHHH----HHHhhhhhhhhccc-chhccHHHHH--HHHhcCccceEeeccCC-cCCCc
Confidence            33445556666666 3333221 111    12457778888876 4566663200  11127899999999765 333  


Q ss_pred             -cccCCCCCCccEEEeccCc----cccccccCCCCcceEEEcCccceeE---ecccc-cCCCCcEEeccCCCCcccccCC
Q 043667          128 -GTFPEHLPALEMLVIEACK----ELSVSVSSLPALCKLKIGGCKKVVW---RSATD-HLGSQNSVVCRDTSNQVFLAGP  198 (387)
Q Consensus       128 -~~~~~~~~~L~~L~l~~~~----~l~~~~~~~~~L~~L~i~~~~~~~~---~~~~~-~~~~L~~L~l~~~~~l~~~~~~  198 (387)
                       +.+|.-..+|+.|.+++..    ..+..+..+|.++.|.++.+..-.+   ..... .-+.+.++++.+|....-....
T Consensus       113 I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~  192 (418)
T KOG2982|consen  113 IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN  192 (418)
T ss_pred             cccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHH
Confidence             2445445688888888754    2335566677777777765421110   00000 1234555555555321110000


Q ss_pred             C-CCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCC
Q 043667          199 L-KPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGL  277 (387)
Q Consensus       199 ~-~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l  277 (387)
                      . ..-++++..  +.+.+|+.-+.-......-+|.+.-|+++. .++.+...-   ..+..+    +.|.-|++.+.+-+
T Consensus       193 ~l~r~Fpnv~s--v~v~e~PlK~~s~ek~se~~p~~~~LnL~~-~~idswasv---D~Ln~f----~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  193 KLSRIFPNVNS--VFVCEGPLKTESSEKGSEPFPSLSCLNLGA-NNIDSWASV---DALNGF----PQLVDLRVSENPLS  262 (418)
T ss_pred             hHHhhcccchh--eeeecCcccchhhcccCCCCCcchhhhhcc-cccccHHHH---HHHcCC----chhheeeccCCccc
Confidence            0 223444444  555555322211111122345555555554 334432210   123333    77777777776644


Q ss_pred             CCccc------ccCCCCCccEEEe
Q 043667          278 VKLPQ------SSLSLSSLREIDI  295 (387)
Q Consensus       278 ~~~~~------~~~~~~~L~~L~l  295 (387)
                      ..+..      .+..+++++.|+=
T Consensus       263 d~l~~~err~llIaRL~~v~vLNG  286 (418)
T KOG2982|consen  263 DPLRGGERRFLLIARLTKVQVLNG  286 (418)
T ss_pred             ccccCCcceEEEEeeccceEEecC
Confidence            43322      2345666666654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=95.99  E-value=0.00086  Score=65.22  Aligned_cols=99  Identities=22%  Similarity=0.368  Sum_probs=54.0

Q ss_pred             CccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCCCccccccccCCCCCcceEec
Q 043667          265 RLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKI  344 (387)
Q Consensus       265 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l  344 (387)
                      .|.+.++++ +.++.+...++-++.|+.|++++ ++++.+......+.|++|++++ +.++.+|..-+.-..  |+.|.+
T Consensus       165 ~L~~a~fsy-N~L~~mD~SLqll~ale~LnLsh-Nk~~~v~~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~--L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSY-NRLVLMDESLQLLPALESLNLSH-NKFTKVDNLRRLPKLKHLDLSY-NCLRHVPQLSMVGCK--LQLLNL  239 (1096)
T ss_pred             hHhhhhcch-hhHHhHHHHHHHHHHhhhhccch-hhhhhhHHHHhccccccccccc-chhccccccchhhhh--heeeee
Confidence            444444432 44555555555566677777776 4555544322336777777766 446666642211223  777777


Q ss_pred             ccCcccccccCCCCCCCccEEeecC
Q 043667          345 ERCRSLTYIAGVQLPPSLKRLDIWN  369 (387)
Q Consensus       345 ~~c~~l~~~~~~~~~~~L~~L~l~~  369 (387)
                      ++ +.++.+-....+.+|+-||++.
T Consensus       240 rn-N~l~tL~gie~LksL~~LDlsy  263 (1096)
T KOG1859|consen  240 RN-NALTTLRGIENLKSLYGLDLSY  263 (1096)
T ss_pred             cc-cHHHhhhhHHhhhhhhccchhH
Confidence            66 4565554334555666666654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.83  E-value=0.014  Score=48.10  Aligned_cols=104  Identities=19%  Similarity=0.188  Sum_probs=60.4

Q ss_pred             cEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC-cCC-cCCCcEEEecCCCCceEeCccccCCCcccCCCCc
Q 043667            9 EQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS-VGQ-LPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRL   86 (387)
Q Consensus         9 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-~~~-l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L   86 (387)
                      ..++++++.+..++. +.  +++.|.+|.++++ +++.+.+ +.. +++|+.|.+.++ .+..++.-    ..+..+|+|
T Consensus        45 d~iDLtdNdl~~l~~-lp--~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl----~pLa~~p~L  115 (233)
T KOG1644|consen   45 DAIDLTDNDLRKLDN-LP--HLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNN-SIQELGDL----DPLASCPKL  115 (233)
T ss_pred             ceecccccchhhccc-CC--CccccceEEecCC-cceeeccchhhhccccceEEecCc-chhhhhhc----chhccCCcc
Confidence            345566665544432 11  2778888888874 6665554 444 677888888887 44443211    114567888


Q ss_pred             ceeeccccCCccccccCcCCCCccCCCCcceEeeccC
Q 043667           87 ETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRC  123 (387)
Q Consensus        87 ~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~  123 (387)
                      ++|.+.+.+.-..-...  ..-+-++|+|+.|++..-
T Consensus       116 ~~Ltll~Npv~~k~~YR--~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  116 EYLTLLGNPVEHKKNYR--LYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ceeeecCCchhcccCce--eEEEEecCcceEeehhhh
Confidence            88888776543322110  011226788888888654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.73  E-value=0.0072  Score=28.60  Aligned_cols=17  Identities=35%  Similarity=0.649  Sum_probs=8.8

Q ss_pred             CCccEEeecCCccccccc
Q 043667          360 PSLKRLDIWNCDNIRTLT  377 (387)
Q Consensus       360 ~~L~~L~l~~C~~l~~l~  377 (387)
                      ++|++|++++|. ++++|
T Consensus         1 ~~L~~L~l~~n~-L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNR-LTSLP   17 (17)
T ss_dssp             TT-SEEEETSS---SSE-
T ss_pred             CccCEEECCCCC-CCCCc
Confidence            356777777766 66665

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.30  E-value=0.13  Score=39.79  Aligned_cols=102  Identities=17%  Similarity=0.264  Sum_probs=41.6

Q ss_pred             ccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCccc-ccCCCCCccEEEecCCCCceec
Q 043667          226 LLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQ-SSLSLSSLREIDIYDCSSLVSF  304 (387)
Q Consensus       226 ~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~  304 (387)
                      .+..+.+|+.+.+..  .+..+...    .|...    .+|+.+.+.+  .++.+.. .+..+++++.+.+..  .+..+
T Consensus         7 ~F~~~~~l~~i~~~~--~~~~I~~~----~F~~~----~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i   72 (129)
T PF13306_consen    7 AFYNCSNLESITFPN--TIKKIGEN----AFSNC----TSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN--NLKSI   72 (129)
T ss_dssp             TTTT-TT--EEEETS--T--EE-TT----TTTT-----TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE
T ss_pred             HHhCCCCCCEEEECC--CeeEeChh----hcccc----cccccccccc--cccccceeeeecccccccccccc--ccccc
Confidence            345555666666653  34444443    23322    4666666654  2444443 244555666666643  45555


Q ss_pred             CCCCcC--CCceEEEeccCCCCCccccccccCCCCCcceEecc
Q 043667          305 PEVALP--SKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIE  345 (387)
Q Consensus       305 ~~~~~~--~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~  345 (387)
                      +...+.  ++++.+.+..  ++..++........  |+.+.+.
T Consensus        73 ~~~~F~~~~~l~~i~~~~--~~~~i~~~~f~~~~--l~~i~~~  111 (129)
T PF13306_consen   73 GDNAFSNCTNLKNIDIPS--NITEIGSSSFSNCN--LKEINIP  111 (129)
T ss_dssp             -TTTTTT-TTECEEEETT--T-BEEHTTTTTT-T----EEE-T
T ss_pred             ccccccccccccccccCc--cccEEchhhhcCCC--ceEEEEC
Confidence            554443  5666666643  25555443222223  5555544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.19  E-value=0.013  Score=29.83  Aligned_cols=18  Identities=22%  Similarity=0.392  Sum_probs=12.8

Q ss_pred             CccEEeecCCccccccccc
Q 043667          361 SLKRLDIWNCDNIRTLTVE  379 (387)
Q Consensus       361 ~L~~L~l~~C~~l~~l~~~  379 (387)
                      +|++||+++| +++.||.+
T Consensus         1 ~L~~Ldls~n-~l~~ip~~   18 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSS   18 (22)
T ss_dssp             TESEEEETSS-EESEEGTT
T ss_pred             CccEEECCCC-cCEeCChh
Confidence            4677777777 67777755

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.81  E-value=0.0076  Score=49.67  Aligned_cols=65  Identities=15%  Similarity=0.278  Sum_probs=45.4

Q ss_pred             CCceEEEeccCCCCCccccccccCCCCCcceEecccCcccccccCC--CCCCCccEEeecCCccccc
Q 043667          311 SKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGV--QLPPSLKRLDIWNCDNIRT  375 (387)
Q Consensus       311 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~C~~l~~  375 (387)
                      ++++.|.+.+|..+.+..-.......|+|+.|+|++|+.||+....  ..+++|+.|.+++.+.+..
T Consensus       125 ~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~  191 (221)
T KOG3864|consen  125 RSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVAN  191 (221)
T ss_pred             chhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhc
Confidence            6788888888887766442111112355999999999999887655  4568888888888665543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.68  E-value=0.0066  Score=50.04  Aligned_cols=65  Identities=26%  Similarity=0.425  Sum_probs=31.5

Q ss_pred             ccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcc-cccCCCCCccEEEecCCC
Q 043667          228 QDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLP-QSSLSLSSLREIDIYDCS  299 (387)
Q Consensus       228 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~c~  299 (387)
                      ..++.++.|.+.+|..+.+..       ++.+...+++|+.|+|+.|+.+++-- .++..+++|+.|.+.+.+
T Consensus       122 ~~l~~i~~l~l~~ck~~dD~~-------L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  122 RDLRSIKSLSLANCKYFDDWC-------LERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             hccchhhhheeccccchhhHH-------HHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence            344555555555555555432       22222234556666666555555432 234455555555554433

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.50  E-value=0.29  Score=37.71  Aligned_cols=108  Identities=19%  Similarity=0.242  Sum_probs=51.6

Q ss_pred             CCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCc
Q 043667          201 PQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKL  280 (387)
Q Consensus       201 ~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~  280 (387)
                      ..+++|+.  +.+..  .+..++...+..+++|+.+.+.+  .+..++..    .+...    ++++++.+.+  .+..+
T Consensus         9 ~~~~~l~~--i~~~~--~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~----~F~~~----~~l~~i~~~~--~~~~i   72 (129)
T PF13306_consen    9 YNCSNLES--ITFPN--TIKKIGENAFSNCTSLKSINFPN--NLTSIGDN----AFSNC----KSLESITFPN--NLKSI   72 (129)
T ss_dssp             TT-TT--E--EEETS--T--EE-TTTTTT-TT-SEEEESS--TTSCE-TT----TTTT-----TT-EEEEETS--TT-EE
T ss_pred             hCCCCCCE--EEECC--CeeEeChhhcccccccccccccc--ccccccee----eeecc----cccccccccc--ccccc
Confidence            34445555  55543  34455555566777788888875  35655543    23333    5788888854  34444


Q ss_pred             cc-ccCCCCCccEEEecCCCCceecCCCCcC-CCceEEEeccCCCCCccc
Q 043667          281 PQ-SSLSLSSLREIDIYDCSSLVSFPEVALP-SKLKKIEIRKCDALKSLP  328 (387)
Q Consensus       281 ~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~-~~L~~L~l~~c~~l~~l~  328 (387)
                      +. .+..+++|+.+++..  +++.++...+. .+++.+.+.+  .+..++
T Consensus        73 ~~~~F~~~~~l~~i~~~~--~~~~i~~~~f~~~~l~~i~~~~--~~~~i~  118 (129)
T PF13306_consen   73 GDNAFSNCTNLKNIDIPS--NITEIGSSSFSNCNLKEINIPS--NITKIE  118 (129)
T ss_dssp             -TTTTTT-TTECEEEETT--T-BEEHTTTTTT-T--EEE-TT--B-SS--
T ss_pred             ccccccccccccccccCc--cccEEchhhhcCCCceEEEECC--CccEEC
Confidence            43 345678888888854  46677666655 5677776653  344444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=93.51  E-value=0.031  Score=53.13  Aligned_cols=111  Identities=19%  Similarity=0.258  Sum_probs=73.0

Q ss_pred             cccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCC
Q 043667          227 LQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPE  306 (387)
Q Consensus       227 l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  306 (387)
                      +..+.+|+.+++.+ ..++.+..     .+..+    ++|+.|++++ +.++.+.. +..++.|+.|++.+ +.+..+..
T Consensus        91 l~~~~~l~~l~l~~-n~i~~i~~-----~l~~~----~~L~~L~ls~-N~I~~i~~-l~~l~~L~~L~l~~-N~i~~~~~  157 (414)
T KOG0531|consen   91 LSKLKSLEALDLYD-NKIEKIEN-----LLSSL----VNLQVLDLSF-NKITKLEG-LSTLTLLKELNLSG-NLISDISG  157 (414)
T ss_pred             cccccceeeeeccc-cchhhccc-----chhhh----hcchheeccc-cccccccc-hhhccchhhheecc-CcchhccC
Confidence            34577888888887 45555432     03333    8888888887 45666653 55666788888887 67777775


Q ss_pred             CCcCCCceEEEeccCCCCCccccc-cccCCCCCcceEecccCccccccc
Q 043667          307 VALPSKLKKIEIRKCDALKSLPEA-WMCDTNSSLETLKIERCRSLTYIA  354 (387)
Q Consensus       307 ~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~~~L~~L~l~~c~~l~~~~  354 (387)
                      ....++|+.++++++. +..+... ...+..  ++.+.+.+ +.+..+.
T Consensus       158 ~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~--l~~l~l~~-n~i~~i~  202 (414)
T KOG0531|consen  158 LESLKSLKLLDLSYNR-IVDIENDELSELIS--LEELDLGG-NSIREIE  202 (414)
T ss_pred             CccchhhhcccCCcch-hhhhhhhhhhhccc--hHHHhccC-Cchhccc
Confidence            5545788888888754 5555431 234556  88888887 3555444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=92.31  E-value=0.064  Score=46.13  Aligned_cols=10  Identities=30%  Similarity=0.182  Sum_probs=5.3

Q ss_pred             CCccEEEecc
Q 043667          264 CRLEYLRLRY  273 (387)
Q Consensus       264 ~~L~~L~l~~  273 (387)
                      |+|++|.++.
T Consensus        91 P~l~~l~ls~  100 (260)
T KOG2739|consen   91 PNLKVLNLSG  100 (260)
T ss_pred             CceeEEeecC
Confidence            5555555554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.01  E-value=0.011  Score=51.19  Aligned_cols=103  Identities=19%  Similarity=0.123  Sum_probs=52.2

Q ss_pred             CcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCccccc-ccccccCCCccE
Q 043667          157 ALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSH-DGLLQDICSLKK  235 (387)
Q Consensus       157 ~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~-~~~l~~~~~L~~  235 (387)
                      +.++|+..||.... ......++.|+.|.++- .++..+..  ...+++|++  +.++... +.++. ...+.++|+|+.
T Consensus        20 ~vkKLNcwg~~L~D-Isic~kMp~lEVLsLSv-NkIssL~p--l~rCtrLkE--lYLRkN~-I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDD-ISICEKMPLLEVLSLSV-NKISSLAP--LQRCTRLKE--LYLRKNC-IESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HhhhhcccCCCccH-HHHHHhcccceeEEeec-cccccchh--HHHHHHHHH--HHHHhcc-cccHHHHHHHhcCchhhh
Confidence            34555555554322 22334456666666552 12222211  234555555  5444321 22111 112456788888


Q ss_pred             EEecCCCCcccchhhHHHHHHhhhhhccCCccEEE
Q 043667          236 LTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLR  270 (387)
Q Consensus       236 L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~  270 (387)
                      |.|..++..+..+..--...+..+    |+|++|+
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~L----PnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVL----PNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHc----ccchhcc
Confidence            888877777665544333345555    8888876

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.78  E-value=0.0038  Score=53.99  Aligned_cols=79  Identities=19%  Similarity=0.244  Sum_probs=46.0

Q ss_pred             CCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCC
Q 043667            6 KNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPR   85 (387)
Q Consensus         6 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~   85 (387)
                      .+.+.|+.+|++...+.  ++. .++.|++|.|+- +++..+.++..+++|++|.++.+ .+.++..-.|    +..+|+
T Consensus        19 ~~vkKLNcwg~~L~DIs--ic~-kMp~lEVLsLSv-NkIssL~pl~rCtrLkElYLRkN-~I~sldEL~Y----Lknlps   89 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDIS--ICE-KMPLLEVLSLSV-NKISSLAPLQRCTRLKELYLRKN-CIESLDELEY----LKNLPS   89 (388)
T ss_pred             HHhhhhcccCCCccHHH--HHH-hcccceeEEeec-cccccchhHHHHHHHHHHHHHhc-ccccHHHHHH----HhcCch
Confidence            34566666666654321  111 267777777777 36777777777777777777766 4554433222    334555


Q ss_pred             cceeeccc
Q 043667           86 LETLRFDA   93 (387)
Q Consensus        86 L~~L~l~~   93 (387)
                      |+.|-+..
T Consensus        90 Lr~LWL~E   97 (388)
T KOG2123|consen   90 LRTLWLDE   97 (388)
T ss_pred             hhhHhhcc
Confidence            55555543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=91.64  E-value=0.12  Score=44.55  Aligned_cols=104  Identities=26%  Similarity=0.293  Sum_probs=63.2

Q ss_pred             cCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCC---CcCCCceEEEeccCCCCCcccc--ccccCCCC
Q 043667          263 SCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEV---ALPSKLKKIEIRKCDALKSLPE--AWMCDTNS  337 (387)
Q Consensus       263 ~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~c~~l~~l~~--~~~~~~~~  337 (387)
                      +..|+.|++.++. ++.+. .+-.+|+|++|.++....-..+.-.   ...|+|+++++++ +.++.+..  .+....+ 
T Consensus        42 ~~~le~ls~~n~g-ltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl~~l~n-  117 (260)
T KOG2739|consen   42 FVELELLSVINVG-LTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRPLKELEN-  117 (260)
T ss_pred             ccchhhhhhhccc-eeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccchhhhhcc-
Confidence            3677777777653 33222 2336789999999874221111111   1129999999998 44665431  1222444 


Q ss_pred             CcceEecccCcccccccCC-----CCCCCccEEeecCCcc
Q 043667          338 SLETLKIERCRSLTYIAGV-----QLPPSLKRLDIWNCDN  372 (387)
Q Consensus       338 ~L~~L~l~~c~~l~~~~~~-----~~~~~L~~L~l~~C~~  372 (387)
                       |..|++.+|. .+.+...     ...++|++||..++..
T Consensus       118 -L~~Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD~~dv~~  155 (260)
T KOG2739|consen  118 -LKSLDLFNCS-VTNLDDYREKVFLLLPSLKYLDGCDVDG  155 (260)
T ss_pred             -hhhhhcccCC-ccccccHHHHHHHHhhhhccccccccCC
Confidence             8999999984 3333322     3568999999887665

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=90.82  E-value=0.0075  Score=46.59  Aligned_cols=85  Identities=18%  Similarity=0.296  Sum_probs=51.0

Q ss_pred             CCccEEEeccCCCCCCccccc-CCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCccccccccCCCCCcc
Q 043667          264 CRLEYLRLRYCKGLVKLPQSS-LSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPEAWMCDTNSSLE  340 (387)
Q Consensus       264 ~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~  340 (387)
                      ..|++.++++ +.+.++|+.+ ..++.++.+++.+ +.+.++|++ +.  +.|+.|++..++ +...|..+..+.+  +.
T Consensus        53 ~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE-~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~--l~  126 (177)
T KOG4579|consen   53 YELTKISLSD-NGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEE-LAAMPALRSLNLRFNP-LNAEPRVIAPLIK--LD  126 (177)
T ss_pred             ceEEEEeccc-chhhhCCHHHhhccchhhhhhcch-hhhhhchHH-HhhhHHhhhcccccCc-cccchHHHHHHHh--HH
Confidence            4566667776 4566777644 3556777788876 677777765 33  778888887643 5555554433444  55


Q ss_pred             eEecccCcccccccC
Q 043667          341 TLKIERCRSLTYIAG  355 (387)
Q Consensus       341 ~L~l~~c~~l~~~~~  355 (387)
                      .|+..+ .....++.
T Consensus       127 ~Lds~~-na~~eid~  140 (177)
T KOG4579|consen  127 MLDSPE-NARAEIDV  140 (177)
T ss_pred             HhcCCC-CccccCcH
Confidence            555555 34444443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=88.83  E-value=0.7  Score=40.33  Aligned_cols=140  Identities=15%  Similarity=0.166  Sum_probs=73.9

Q ss_pred             CCCCccccceeEEEcCCCCccccccc---ccccCCCccEEEecCCCCcccchhhHHHHHHhhh-----hhccCCccEEEe
Q 043667          200 KPQLPKLEELILSTKEQTYIWKSHDG---LLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQL-----CELSCRLEYLRL  271 (387)
Q Consensus       200 ~~~l~~L~~l~L~l~~~~~~~~~~~~---~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l-----~~~~~~L~~L~l  271 (387)
                      .-.+++|++  +.+++...-..+|..   .+++-..|.+|.+++| .++.+.......++..+     ...-|.|++...
T Consensus        88 Llkcp~l~~--v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vic  164 (388)
T COG5238          88 LLKCPRLQK--VDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC  164 (388)
T ss_pred             HhcCCccee--eeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence            345677777  888776654444432   3455677888888875 44444333222112111     113367777766


Q ss_pred             ccCCCCCCccc-----ccCCCCCccEEEecCCCCceecCC-----CCcC--CCceEEEeccCCCCCc-----cccccccC
Q 043667          272 RYCKGLVKLPQ-----SSLSLSSLREIDIYDCSSLVSFPE-----VALP--SKLKKIEIRKCDALKS-----LPEAWMCD  334 (387)
Q Consensus       272 ~~c~~l~~~~~-----~~~~~~~L~~L~l~~c~~l~~~~~-----~~~~--~~L~~L~l~~c~~l~~-----l~~~~~~~  334 (387)
                      ..+ .+..-+.     .+.+-.+|+.+.+.. +.|..-..     .+..  .+|+.|++..+. ++.     +...+..+
T Consensus       165 grN-Rlengs~~~~a~~l~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~~W  241 (388)
T COG5238         165 GRN-RLENGSKELSAALLESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALCEW  241 (388)
T ss_pred             ccc-hhccCcHHHHHHHHHhhcCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhccc
Confidence            553 3443332     233446777777776 44432111     1111  678888887643 221     22222223


Q ss_pred             CCCCcceEecccC
Q 043667          335 TNSSLETLKIERC  347 (387)
Q Consensus       335 ~~~~L~~L~l~~c  347 (387)
                      ..  |+.|.+.+|
T Consensus       242 ~~--lrEL~lnDC  252 (388)
T COG5238         242 NL--LRELRLNDC  252 (388)
T ss_pred             ch--hhhccccch
Confidence            44  788888887

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=88.41  E-value=0.29  Score=25.90  Aligned_cols=15  Identities=27%  Similarity=0.507  Sum_probs=9.6

Q ss_pred             cceEecccCcccccc
Q 043667          339 LETLKIERCRSLTYI  353 (387)
Q Consensus       339 L~~L~l~~c~~l~~~  353 (387)
                      |++|++++|+++++.
T Consensus         4 L~~L~l~~C~~itD~   18 (26)
T smart00367        4 LRELDLSGCTNITDE   18 (26)
T ss_pred             CCEeCCCCCCCcCHH
Confidence            666666666666653

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=87.81  E-value=0.17  Score=43.95  Aligned_cols=40  Identities=8%  Similarity=0.018  Sum_probs=21.9

Q ss_pred             ccccCCCCcceEEEcCcccee-Ee----cccccCCCCcEEeccCC
Q 043667          150 VSVSSLPALCKLKIGGCKKVV-WR----SATDHLGSQNSVVCRDT  189 (387)
Q Consensus       150 ~~~~~~~~L~~L~i~~~~~~~-~~----~~~~~~~~L~~L~l~~~  189 (387)
                      ..+.+||+|+.++++++..-. .+    ..+.+.++|++|.+++|
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn  130 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN  130 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence            345566777777776643221 11    22344566777776655

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=86.88  E-value=0.052  Score=42.11  Aligned_cols=56  Identities=23%  Similarity=0.353  Sum_probs=29.3

Q ss_pred             CCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC-cCCcCCCcEEEecCC
Q 043667            7 NLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGM   64 (387)
Q Consensus         7 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-~~~l~~L~~L~l~~~   64 (387)
                      +|...+++++....+|..+.. .|+-+.+|++.+ +.+.++|. ++.++.|+.|+++.+
T Consensus        54 el~~i~ls~N~fk~fp~kft~-kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N  110 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTI-KFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFN  110 (177)
T ss_pred             eEEEEecccchhhhCCHHHhh-ccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccC
Confidence            344445555555555554442 244555555555 25555553 555555555555555

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=81.87  E-value=0.86  Score=24.13  Aligned_cols=18  Identities=39%  Similarity=0.674  Sum_probs=14.0

Q ss_pred             CCccEEeecCCcccccccc
Q 043667          360 PSLKRLDIWNCDNIRTLTV  378 (387)
Q Consensus       360 ~~L~~L~l~~C~~l~~l~~  378 (387)
                      ++|++|++++ ++|+++|.
T Consensus         2 ~~L~~L~vs~-N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSN-NQLTSLPE   19 (26)
T ss_pred             cccceeecCC-CccccCcc
Confidence            5678888887 77888884

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	387
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 73.0 bits (178), Expect = 4e-14
 Identities = 55/348 (15%), Positives = 114/348 (32%), Gaps = 71/348 (20%)

Query: 52  QLPSLKHLAVCGMTSVKRLGSEFYGK----GAAIPFPRLETLRFDAMLGWEDWIPLRSGQ 107
           +L   K++ + G+     LGS   GK           +++      +     W+ L++  
Sbjct: 146 ELRPAKNVLIDGV-----LGS---GKTWVALDVCLSYKVQCKMDFKIF----WLNLKNCN 193

Query: 108 GVEGFPKLRE--LHILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLP-ALCKLKIG 164
             E   ++ +  L+ +  +       +H   +++ +     EL   + S P   C L   
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSR--SDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--- 248

Query: 165 GCKKV---VWRSAT----DHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQT 217
               V   V  +      + L  +  +  R      FL+      +      +  T ++ 
Sbjct: 249 ----VLLNVQNAKAWNAFN-LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 218 ------YIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRL 271
                 Y+      L +++ +     +       S++AE  +D            +  + 
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRL-------SIIAESIRDG-------LATWDNWKH 349

Query: 272 RYCKGLVKLPQSSLSLSSLREIDIYDC-SSLVSFPE-VALPSKLKKIEIRKCDALKSLPE 329
             C  L  + +S  SL+ L   +       L  FP    +P+ L  + +   D +KS   
Sbjct: 350 VNCDKLTTIIES--SLNVLEPAEYRKMFDRLSVFPPSAHIPTIL--LSLIWFDVIKSDVM 405

Query: 330 AWMCD-TNSSLETLKIERCRSLTYIAGVQLPPSLKRLDIWNCDNIRTL 376
             +      SL  ++ +   S   I  + L   LK       +N   L
Sbjct: 406 VVVNKLHKYSL--VEKQPKESTISIPSIYL--ELKV----KLENEYAL 445

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 51/258 (19%), Positives = 90/258 (34%), Gaps = 47/258 (18%)

Query: 114 KLRELHILRCSKLQGTFPE---HLPALEMLVIEACK--ELSVSVSSLPALCKLKIGGCKK 168
            L+ +  +  + L    P+       LE L +       L  S++SL  L +L I  C +
Sbjct: 105 HLQHMT-IDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPE 162

Query: 169 VVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQ 228
                    L      +    ++           L  L+ L L     T I      L  
Sbjct: 163 ---------LTELPEPLASTDASGEH------QGLVNLQSLRLE---WTGIRS----LPA 200

Query: 229 DICSLKKLT---IDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSL 285
            I +L+ L    I     L +L           +  L  +LE L LR C  L   P    
Sbjct: 201 SIANLQNLKSLKIRNS-PLSALGPA--------IHHLP-KLEELDLRGCTALRNYPPIFG 250

Query: 286 SLSSLREIDIYDCSSLVSFP-EVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKI 344
             + L+ + + DCS+L++ P ++   ++L+K+++R C  L  LP   +     +   + +
Sbjct: 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS-LIAQL-PANCIILV 308

Query: 345 ERCRSLTYIAGVQLPPSL 362
                         P + 
Sbjct: 309 PPHLQAQLDQ--HRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 59.6 bits (145), Expect = 4e-10
 Identities = 58/286 (20%), Positives = 104/286 (36%), Gaps = 54/286 (18%)

Query: 115 LRELHILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWRSA 174
              L+    + L+  + + L   +     A +    S          +I        ++ 
Sbjct: 14  RENLYFQGSTALR-PYHDVLSQWQRHYN-ADRNRWHSAWRQANSNNPQIETRTGRALKAT 71

Query: 175 TDHLG--SQNSVVCRDTSNQVFLAGPLK--P----QLPKLEELILSTKEQTYIWKSHDGL 226
            D L   +Q   V  +  +      PL   P    +L  L+ + +       +  +    
Sbjct: 72  ADLLEDATQPGRVALELRSV-----PLPQFPDQAFRLSHLQHMTIDAAGLMELPDT---- 122

Query: 227 LQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQS--- 283
           +Q    L+ LT+     L++L A         +  L+ RL  L +R C  L +LP+    
Sbjct: 123 MQQFAGLETLTLARN-PLRALPAS--------IASLN-RLRELSIRACPELTELPEPLAS 172

Query: 284 ------SLSLSSLREIDIYDCSSLVSFP-EVALPSKLKKIEIRKCDALKSLPEAWMCDTN 336
                    L +L+ + + + + + S P  +A    LK ++IR    L +L  A +    
Sbjct: 173 TDASGEHQGLVNLQSLRL-EWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPA-IHHL- 228

Query: 337 SSLETLKIERCRSLTYIAGVQLPP------SLKRLDIWNCDNIRTL 376
             LE L +  C +L        PP       LKRL + +C N+ TL
Sbjct: 229 PKLEELDLRGCTALR-----NYPPIFGGRAPLKRLILKDCSNLLTL 269

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 16/152 (10%)

Query: 232 SLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLR 291
            L++L+I  CP+L  L             +    L+ LRL +   +  LP S  +L +L+
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLK 209

Query: 292 EIDIYDCSSLVSFP-EVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSL 350
            + I +   L +    +    KL+++++R C AL++ P        + L+ L ++ C +L
Sbjct: 210 SLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPP-IFGGR-APLKRLILKDCSNL 266

Query: 351 TYIAGVQLPPS------LKRLDIWNCDNIRTL 376
                  LP        L++LD+  C N+  L
Sbjct: 267 LT-----LPLDIHRLTQLEKLDLRGCVNLSRL 293

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 52/299 (17%), Positives = 81/299 (27%), Gaps = 93/299 (31%)

Query: 6   KNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLP-SVGQLPSLKHLAVCGM 64
            +L+   I      + P       F+ L TL      +   LP S+  L  L+ L++   
Sbjct: 104 SHLQHMTIDAAGLMELPDTMQ--QFAGLETLTLARNPL-RALPASIASLNRLRELSIRAC 160

Query: 65  TSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCS 124
             +  L                                  +    +G   L+ L  L  +
Sbjct: 161 PELTELPEPLAS--------------------------TDASGEHQGLVNLQSLR-LEWT 193

Query: 125 KLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSV 184
            +       LPA              S+++L  L  LKI              L +    
Sbjct: 194 GI-----RSLPA--------------SIANLQNLKSLKIRNSP----------LSALGPA 224

Query: 185 VCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLT---IDWC 241
           +                 LPKLEEL L                        L    +  C
Sbjct: 225 IH---------------HLPKLEELDLRGCTAL------RNYPPIFGGRAPLKRLILKDC 263

Query: 242 PKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSS 300
             L +L  +        +  L+ +LE L LR C  L +LP     L +   I +     
Sbjct: 264 SNLLTLPLD--------IHRLT-QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 43/302 (14%), Positives = 94/302 (31%), Gaps = 51/302 (16%)

Query: 109 VEGFPKLRELHILRCSKLQGT------FPEHLPALEMLVIEACKELSVSVSSL------- 155
           V    K++ L +   S  +          +H  +LE+L     +   +S   L       
Sbjct: 160 VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219

Query: 156 PALCKLKIGGCKKV----VWRSATD--HLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEEL 209
            +L  +K+G  + +     +++A +       +         +          L    +L
Sbjct: 220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYM-------NLVFPRKL 272

Query: 210 ILSTKEQTYIWKSHDGLLQDIC-SLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEY 268
                  +Y+  +   +L      ++KL + +             +    L +    LE 
Sbjct: 273 CRLGL--SYMGPNEMPILFPFAAQIRKLDLLYALLET--------EDHCTLIQKCPNLEV 322

Query: 269 LRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALP---SKLKKIEIRKCDALK 325
           L  R   G   L   +     L+ + I   +      +         L  +  + C  L+
Sbjct: 323 LETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL-AQGCQELE 381

Query: 326 SLPEAWMCDTNSSLETLKIERCRSLTYIAGVQLPPSLKRLDIWNCDNIRTLTVEEGVQSS 385
            +       TN SLE++     ++L            + + +   + I  L ++ GV+S 
Sbjct: 382 YMAVYVSDITNESLESI-GTYLKNLC---------DFRLVLLDREERITDLPLDNGVRSL 431

Query: 386 SR 387
             
Sbjct: 432 LI 433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 48/278 (17%), Positives = 85/278 (30%), Gaps = 59/278 (21%)

Query: 108 GVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIGGCK 167
           G+E    L +L     + +          L  L  ++ K  ++ V+ L  L  L      
Sbjct: 59  GIEKLTGLTKLI-CTSNNITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNC---- 113

Query: 168 KVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLL 227
                         N +   D S             P L  L  +    T I        
Sbjct: 114 ------------DTNKLTKLDVSQ-----------NPLLTYLNCARNTLTEI-------- 142

Query: 228 QDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSC---RLEYLRLRYCKGLVKLPQSS 284
            D+    +LT   C   + +  + +   Q QL  L C   ++  L +   K L +L   +
Sbjct: 143 -DVSHNTQLTELDCHLNKKI-TKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRL---N 197

Query: 285 LSLSSLREIDIYDCSSLVSFPEVALPS-KLKKIEIRKCDALKSLPEAWMCDTNSSLETLK 343
              +++ ++D+     L         S KL +I++     L        C  N  L  L 
Sbjct: 198 CDTNNITKLDLNQNIQLTFL---DCSSNKLTEIDVTPLTQLTYF----DCSVN-PLTELD 249

Query: 344 IERCRSLT--YIAGVQLPPSLKRLDIWNCDNIRTLTVE 379
           +     LT  +         L  +D+ +   +     E
Sbjct: 250 VSTLSKLTTLHCIQTD----LLEIDLTHNTQLIYFQAE 283

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 54/371 (14%), Positives = 109/371 (29%), Gaps = 63/371 (16%)

Query: 28  SSFSNLVTLKFEYCGMCPTLPSVGQL----PSLKHLAVCGMTSVKRLGSEFYGKGAAIPF 83
            ++++LV+L         +  ++ +L    P+LK L +     +++L +           
Sbjct: 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT------LLQRA 234

Query: 84  PRLETLRFDAMLGWEDWIPLRSGQGV-EGFPKLRELHILRCSKLQG--TFPEHLPALEML 140
           P+LE L                      G  +LR L     +              L  L
Sbjct: 235 PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTL 294

Query: 141 VIEACKELSVSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLK 200
            +      S  +  L       +  C K+           Q   V     +       L 
Sbjct: 295 NLSYATVQSYDLVKL-------LCQCPKL-----------QRLWVLDYIEDAGLEV--LA 334

Query: 201 PQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLC 260
                L EL +   E        +  L +   L  +++  CPKL+S++    +     L 
Sbjct: 335 STCKDLRELRVFPSEP--FVMEPNVALTEQ-GLVSVSMG-CPKLESVLYFCRQMTNAALI 390

Query: 261 ELS---CRLEYLRLRYCKGLVKLPQSSLSL-----------SSLREIDIYDCSSLVSFPE 306
            ++     +   RL   +       +   L             LR + +    +   F  
Sbjct: 391 TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEY 450

Query: 307 VA-LPSKLKKIEIRKCD----ALKSLPEAWMCDTNSSLETLKIERCRSLTY--IAGVQLP 359
           +     K++ + +         +  +     C    SL  L+I  C       +A     
Sbjct: 451 IGTYAKKMEMLSVAFAGDSDLGMHHV--LSGC---DSLRKLEIRDCPFGDKALLANASKL 505

Query: 360 PSLKRLDIWNC 370
            +++ L + +C
Sbjct: 506 ETMRSLWMSSC 516

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 51/307 (16%), Positives = 89/307 (28%), Gaps = 62/307 (20%)

Query: 83  FPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVI 142
           FP++ ++       + D+  +  G G   +P +  +                  LE + +
Sbjct: 65  FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMS------------SSYTWLEEIRL 112

Query: 143 EACK----ELSVSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGP 198
           +        L +   S      L +  C+       +    +  +  C            
Sbjct: 113 KRMVVTDDCLELIAKSFKNFKVLVLSSCEGF-----STDGLAAIAATC------------ 155

Query: 199 LKPQLPKLEELILSTKEQTYIWKSHDGLLQDIC-SLKKLTIDWCPKLQSLVAEEEKDQQQ 257
                  L+EL L   +   +         D   SL  L I       S  A E      
Sbjct: 156 -----RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE------ 204

Query: 258 QLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIE 317
           +L      L+ L+L     L KL         L E+     ++ V     +  S      
Sbjct: 205 RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA---- 260

Query: 318 IRKCDALKSLPEAW---------MCDTNSSLETLKIERCRSLTY--IAGVQLPPSLKRLD 366
           +  C  L+ L   W         +    S L TL +      +Y  +  +   P L+RL 
Sbjct: 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLW 320

Query: 367 IWNCDNI 373
           +   D I
Sbjct: 321 V--LDYI 325

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 57/403 (14%), Positives = 106/403 (26%), Gaps = 94/403 (23%)

Query: 29  SFSNLVTLKFEYCGM--CPTLPSVGQ-LPSLKHLAV--CGMTSVKRLGSEFYGKGAAIPF 83
           SF N   L    C       L ++     +LK L +    +  V       +       +
Sbjct: 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT----Y 183

Query: 84  PRLETLRFD---AMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQG--TFPEHLPALE 138
             L +L      + + +     L     V   P L+ L + R   L+   T  +  P LE
Sbjct: 184 TSLVSLNISCLASEVSFSALERL-----VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLE 238

Query: 139 MLVIEACKELSVSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGP 198
            L                    L   GCK++   S              D       A  
Sbjct: 239 ELGTGGYTAEVRPDVYSGLSVALS--GCKELRCLS-----------GFWDAVPAYLPA-- 283

Query: 199 LKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLT----------------IDWCP 242
           +     +L  L LS     Y       L++ +C   KL                    C 
Sbjct: 284 VYSVCSRLTTLNLS-----YATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCK 338

Query: 243 KLQSLVAEEEKDQQQQLC---------ELSCRLEYLR--LRYCKGLVK--LPQSSLSLSS 289
            L+ L     +    +            +S     L   L +C+ +    L   + +  +
Sbjct: 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPN 398

Query: 290 LREIDIYDCSSLVSFPEVALPS------------KLKKIEIRKC---DALKSLPEAWMCD 334
           +    +              P              L+++ +         + +       
Sbjct: 399 MTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYA--- 455

Query: 335 TNSSLETLKIERC----RSLTYIAGVQLPPSLKRLDIWNCDNI 373
               +E L +         + ++       SL++L+I +C   
Sbjct: 456 --KKMEMLSVAFAGDSDLGMHHVLSG--CDSLRKLEIRDCPFG 494

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 45/192 (23%), Positives = 64/192 (33%), Gaps = 39/192 (20%)

Query: 199 LKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTI---------DWCPKLQSLVA 249
           L    P LE L+ S    T + +          SLK L +         D  P L+ L  
Sbjct: 86  LPELPPHLESLVASCNSLTELPEL-------PQSLKSLLVDNNNLKALSDLPPLLEYLGV 138

Query: 250 EEEKDQQQQLCELS-----CRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSF 304
                   QL +L        L+ + +     L KLP       SL  I   +   L   
Sbjct: 139 -----SNNQLEKLPELQNSSFLKIIDVDNNS-LKKLPD---LPPSLEFIAAGNN-QLEEL 188

Query: 305 PEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGVQLPPSLKR 364
           PE+     L  I       LK LP+        SLE++       L  +  +Q  P L  
Sbjct: 189 PELQNLPFLTAIYADNNS-LKKLPDLP-----LSLESIVAGNNI-LEELPELQNLPFLTT 241

Query: 365 LDIWNCDNIRTL 376
           +   N   ++TL
Sbjct: 242 IYADNN-LLKTL 252

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 38/232 (16%), Positives = 66/232 (28%), Gaps = 31/232 (13%)

Query: 166 CKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDG 225
           CK+  W           ++     +    + G L  Q         S  +Q         
Sbjct: 36  CKR--WYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPF 93

Query: 226 LLQDI----CSLKKLTIDW----CPKLQSLVAEEEKDQQQQLCELS--CRLEYLRLRYCK 275
            +Q +      ++  T+      C KLQ+L  E  +     +  L+    L  L L  C 
Sbjct: 94  RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 153

Query: 276 GL--VKLPQSSLSLSSLREIDIYDCSSLVSFPEVAL----PSKLKKIEIRKC------DA 323
           G     L     S S L E+++  C                  + ++ +           
Sbjct: 154 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD 213

Query: 324 LKSLPEAWMCDTNSSLETLKIERCRSLT--YIAGVQLPPSLKRLDIWNCDNI 373
           L +L     C    +L  L +     L             L+ L +  C +I
Sbjct: 214 LSTL--VRRC---PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 260

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 41/282 (14%), Positives = 83/282 (29%), Gaps = 76/282 (26%)

Query: 111 GFPKLRELHILRCSKLQGT---FPEHLPALEMLVIEACK---ELSVSVSSLPALCKLKIG 164
              +++ + +        T          L+ L +E  +    +  +++    L +L + 
Sbjct: 91  SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150

Query: 165 GCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHD 224
           GC                     + + Q  L+        +L+EL LS            
Sbjct: 151 GCSGF-----------------SEFALQTLLSS-----CSRLDELNLS------------ 176

Query: 225 GLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCR-LEYLRLRYCKGLVK---L 280
                          WC               Q         +  L L   +  ++   L
Sbjct: 177 ---------------WCFDFTE-------KHVQVAVAHVSETITQLNLSGYRKNLQKSDL 214

Query: 281 PQSSLSLSSLREIDIYDCSSL--VSFPEVALPSKLKKIEIRKCDAL--KSLPEAWMCDTN 336
                   +L  +D+ D   L    F E    + L+ + + +C  +  ++L E       
Sbjct: 215 STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI--- 271

Query: 337 SSLETLKIERCRSLTYIAGVQLPPSLKRLDIWNCDNIRTLTV 378
            +L+TL++        +    L  +L  L I NC +  T+  
Sbjct: 272 PTLKTLQVFGIVPDGTLQ--LLKEALPHLQI-NCSHFTTIAR 310

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 33/208 (15%), Positives = 65/208 (31%), Gaps = 50/208 (24%)

Query: 203 LPKLEELILSTKEQTYIWKSHDGLLQDICSLKKL--------TIDWCPKLQSLVAEEEKD 254
           LPK+  + L    + +I    D   + +  L+ L        TI + P +  +     K 
Sbjct: 337 LPKVAYIDLQ---KNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKL 393

Query: 255 QQQQLCELSCRLEYLRLRYCKGLVKLPQSS--LSLSSLREIDIYDCSSLVSFPEVALPSK 312
               L +++     + L   + L  L      L +  L+ + +       S      PS+
Sbjct: 394 VT--LPKINLTANLIHLSENR-LENLDILYFLLRVPHLQILILNQNR-FSSCSGDQTPSE 449

Query: 313 LKKIE--------IRKCDALKSLPEAWMCDTNSSLETLKIERCR---------------- 348
              +E        ++     +   + +     S L+ L +                    
Sbjct: 450 NPSLEQLFLGENMLQLAWETELCWDVFEG--LSHLQVLYLNHNYLNSLPPGVFSHLTALR 507

Query: 349 -------SLTYIAGVQLPPSLKRLDIWN 369
                   LT ++   LP +L+ LDI  
Sbjct: 508 GLSLNSNRLTVLSHNDLPANLEILDISR 535

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 40.7 bits (94), Expect = 5e-04
 Identities = 35/198 (17%), Positives = 66/198 (33%), Gaps = 30/198 (15%)

Query: 109 VEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKE-----LSVSVSSLPALCKLKI 163
           ++  P L  L I   + L     +  P L+ L I +          +  S LP L KL +
Sbjct: 168 LDAMPLLNNLKIKGTNNL-SIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVL 226

Query: 164 GGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSH 223
                        ++G ++     D    VF     K + P L+ L +   E+  +    
Sbjct: 227 -------------YVGVEDYG--FDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271

Query: 224 DGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCK----GLVK 279
                 +  L+ + I     L    A    D   ++      L+++ ++Y         +
Sbjct: 272 FLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIK----HLKFINMKYNYLSDEMKKE 326

Query: 280 LPQSSLSLSSLREIDIYD 297
           L +S      + +   YD
Sbjct: 327 LQKSLPMKIDVSDSQEYD 344

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	387
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.94
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.94
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.93
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.93
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.92
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.92
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.92
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.92
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.92
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.92
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.92
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.91
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.91
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.91
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.9
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.9
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.89
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.89
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.89
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.89
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.89
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.89
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.89
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.88
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.88
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.88
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.88
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.86
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.86
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.86
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.86
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.86
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.84
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.84
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.83
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.83
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.82
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.81
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.79
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.78
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.78
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.76
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.75
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.73
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.73
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.73
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.73
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.72
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.72
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.71
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.71
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.71
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.71
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.71
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.7
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.69
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.69
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.68
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.68
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.66
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.65
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.65
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.63
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.62
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.62
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.6
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.59
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.58
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.58
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.57
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.53
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.52
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.51
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.5
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.5
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.5
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.48
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.48
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.48
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.47
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.46
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.45
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.44
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.39
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.32
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.31
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.3
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.28
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.28
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.26
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.23
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.23
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.22
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.2
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.14
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.1
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.1
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.03
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.03
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.03
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.0
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.99
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.98
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.95
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.95
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.93
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.93
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.88
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.88
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.88
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.86
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.86
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.85
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.8
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.79
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.78
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.78
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.77
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.76
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.73
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.68
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.67
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.64
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.63
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.58
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.53
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.52
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.49
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.43
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.43
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.41
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.4
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.36
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.35
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.22
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.19
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.15
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.03
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.0
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.99
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.89
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.84
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.8
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.29
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.66
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.56
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.43
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	93.96
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	89.94
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	89.84
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	87.15

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.94  E-value=1.2e-25  Score=223.07  Aligned_cols=332  Identities=18%  Similarity=0.207  Sum_probs=160.4

Q ss_pred             CCCccC--CccCCCccEEEeecCCCCCCCCC-cCCcCCCcEEEecCCCCceE--eCccccCCCcccCCCCcceeeccccC
Q 043667           21 FPTWFG--DSSFSNLVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGMTSVKR--LGSEFYGKGAAIPFPRLETLRFDAML   95 (387)
Q Consensus        21 ~p~~~~--~~~l~~L~~L~l~~c~~~~~l~~-~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~~~~~~~L~~L~l~~~~   95 (387)
                      +|..++  .  +++|++|++++|...+.+|. ++++++|++|+++++..+..  +|..+..-.....+++|++|++.++.
T Consensus       239 ip~~l~~~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~  316 (636)
T 4eco_A          239 KTEDLKWDN--LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN  316 (636)
T ss_dssp             TTSCCCGGG--CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred             Cchhhhhcc--cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence            455444  3  55555555555443444442 44555555555555521321  22221000000112455555555432


Q ss_pred             CccccccCcCCC--CccCCCCcceEeeccCcccccccCC--CCCCccEEEeccCc--cccccccCCCC-cceEEEcCccc
Q 043667           96 GWEDWIPLRSGQ--GVEGFPKLRELHILRCSKLQGTFPE--HLPALEMLVIEACK--ELSVSVSSLPA-LCKLKIGGCKK  168 (387)
Q Consensus        96 ~l~~~~~~~~~~--~i~~~~~L~~L~l~~~~~l~~~~~~--~~~~L~~L~l~~~~--~l~~~~~~~~~-L~~L~i~~~~~  168 (387)
                       +... +    .  .+..+++|+.|+++++ .+.+.+|.  .+++|+.|+++++.  .++..+..+++ |++|+++++..
T Consensus       317 -l~~i-p----~~~~l~~l~~L~~L~L~~N-~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l  389 (636)
T 4eco_A          317 -LKTF-P----VETSLQKMKKLGMLECLYN-QLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL  389 (636)
T ss_dssp             -CSSC-C----CHHHHTTCTTCCEEECCSC-CCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCC
T ss_pred             -CCcc-C----chhhhccCCCCCEEeCcCC-cCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcC
Confidence             1111 1    1  2334555555555554 23334441  13455555555543  22233444555 56666555543


Q ss_pred             eeEecccccC--CCCcEEeccCCCCcccccCCCCC-------CCccccceeEEEcCCCCcccccccccccCCCccEEEec
Q 043667          169 VVWRSATDHL--GSQNSVVCRDTSNQVFLAGPLKP-------QLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTID  239 (387)
Q Consensus       169 ~~~~~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~-------~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  239 (387)
                      ..++..+...  ++|++|+++++.-....+.. ..       .+++|++  +.++++. ++.+|..++..+++|++|+++
T Consensus       390 ~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~L~~--L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls  465 (636)
T 4eco_A          390 KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN-FDPLDPTPFKGINVSS--INLSNNQ-ISKFPKELFSTGSPLSSINLM  465 (636)
T ss_dssp             SSCCSCCCTTCSSCEEEEECCSSCTTTTTTCS-SCTTCSSCCCCCCEEE--EECCSSC-CCSCCTHHHHTTCCCSEEECC
T ss_pred             cccchhhhhcccCccCEEECcCCcCCCcchhh-hcccccccccCCCCCE--EECcCCc-cCcCCHHHHccCCCCCEEECC
Confidence            3333333332  25566666554332222211 11       3345555  6665543 335555545556667777776


Q ss_pred             CCCCcccchhhHHHHH---HhhhhhccCCccEEEeccCCCCCCcccccC--CCCCccEEEecCCCCceecCCCCcC-CCc
Q 043667          240 WCPKLQSLVAEEEKDQ---QQQLCELSCRLEYLRLRYCKGLVKLPQSSL--SLSSLREIDIYDCSSLVSFPEVALP-SKL  313 (387)
Q Consensus       240 ~~~~l~~~~~~~~~~~---~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~-~~L  313 (387)
                      ++ .+..++...+...   +..+    ++|++|+++++ .++.+|..+.  .+++|+.|++++ +.++.+|..... ++|
T Consensus       466 ~N-~l~~i~~~~~~~~~~~~~~l----~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~-N~l~~ip~~~~~l~~L  538 (636)
T 4eco_A          466 GN-MLTEIPKNSLKDENENFKNT----YLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSY-NSFSKFPTQPLNSSTL  538 (636)
T ss_dssp             SS-CCSBCCSSSSEETTEECTTG----GGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCS-SCCSSCCCGGGGCSSC
T ss_pred             CC-CCCCcCHHHhcccccccccc----CCccEEECcCC-cCCccChhhhhccCCCcCEEECCC-CCCCCcChhhhcCCCC
Confidence            64 3334443210000   0011    26777777764 3556666665  677777777776 355555533222 677


Q ss_pred             eEEEecc------CCCCCccccccccCCCCCcceEecccCcccccccCCCCCCCccEEeecCCccccccc
Q 043667          314 KKIEIRK------CDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGVQLPPSLKRLDIWNCDNIRTLT  377 (387)
Q Consensus       314 ~~L~l~~------c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~  377 (387)
                      ++|++++      +...+.+|..+..+++  |++|++++| +++.+|.. ..++|++|++++|+ ++++.
T Consensus       539 ~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~--L~~L~Ls~N-~l~~ip~~-~~~~L~~L~Ls~N~-l~~~~  603 (636)
T 4eco_A          539 KGFGIRNQRDAQGNRTLREWPEGITLCPS--LTQLQIGSN-DIRKVNEK-ITPNISVLDIKDNP-NISID  603 (636)
T ss_dssp             CEEECCSCBCTTCCBCCCCCCTTGGGCSS--CCEEECCSS-CCCBCCSC-CCTTCCEEECCSCT-TCEEE
T ss_pred             CEEECCCCcccccCcccccChHHHhcCCC--CCEEECCCC-cCCccCHh-HhCcCCEEECcCCC-Ccccc
Confidence            7777743      3334556666666666  777777775 55666654 33677777777754 44443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.94  E-value=1.8e-25  Score=226.56  Aligned_cols=64  Identities=17%  Similarity=0.147  Sum_probs=31.8

Q ss_pred             CCceEEEeccCCCCCccccccccCCCCCcceEecccCcccc-cccCC-CCCCCccEEeecCCccccccc
Q 043667          311 SKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLT-YIAGV-QLPPSLKRLDIWNCDNIRTLT  377 (387)
Q Consensus       311 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~-~~~~~L~~L~l~~C~~l~~l~  377 (387)
                      ++|+.|+++++.--..+|..+..++.  |++|+++++ +++ .+|.. ..+++|++|++++++--..+|
T Consensus       656 ~~L~~L~Ls~N~l~g~ip~~l~~L~~--L~~LdLs~N-~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP  721 (768)
T 3rgz_A          656 PYLFILNLGHNDISGSIPDEVGDLRG--LNILDLSSN-KLDGRIPQAMSALTMLTEIDLSNNNLSGPIP  721 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCTT--CCEEECCSS-CCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred             ccCCEEeCcCCccCCCCChHHhCCCC--CCEEECCCC-cccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence            45555555554333345555555555  555555554 333 33333 344556666666644444444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.94  E-value=3e-25  Score=220.18  Aligned_cols=319  Identities=15%  Similarity=0.148  Sum_probs=219.2

Q ss_pred             CCCccEEEeecCCCCCC------------------CCC-cC--CcCCCcEEEecCCCCceEeCccccCCCcccCCCCcce
Q 043667           30 FSNLVTLKFEYCGMCPT------------------LPS-VG--QLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLET   88 (387)
Q Consensus        30 l~~L~~L~l~~c~~~~~------------------l~~-~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~   88 (387)
                      +++|++|+++++ .++.                  +|. ++  ++++|++|++++|.....+|..      +..+++|++
T Consensus       205 l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~------l~~l~~L~~  277 (636)
T 4eco_A          205 LTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF------LKALPEMQL  277 (636)
T ss_dssp             CTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT------TTTCSSCCE
T ss_pred             ccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH------HhcCCCCCE
Confidence            788889999886 4666                  775 67  8899999999888555555544      356888999


Q ss_pred             eeccccCCccc-cccCcCCCCccC------CCCcceEeeccCcccccccCC-----CCCCccEEEeccCc---ccccccc
Q 043667           89 LRFDAMLGWED-WIPLRSGQGVEG------FPKLRELHILRCSKLQGTFPE-----HLPALEMLVIEACK---ELSVSVS  153 (387)
Q Consensus        89 L~l~~~~~l~~-~~~~~~~~~i~~------~~~L~~L~l~~~~~l~~~~~~-----~~~~L~~L~l~~~~---~l~~~~~  153 (387)
                      |+++++..+.+ ..+    ..++.      +++|++|+++++ .+. .+|.     .+++|+.|+++++.   .++ .+.
T Consensus       278 L~Ls~n~~l~~~~lp----~~~~~L~~~~~l~~L~~L~L~~n-~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~  350 (636)
T 4eco_A          278 INVACNRGISGEQLK----DDWQALADAPVGEKIQIIYIGYN-NLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG  350 (636)
T ss_dssp             EECTTCTTSCHHHHH----HHHHHHHHSGGGGTCCEEECCSS-CCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE
T ss_pred             EECcCCCCCccccch----HHHHhhhccccCCCCCEEECCCC-cCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhC
Confidence            99888763443 222    22222      388899999877 444 5665     46788888888775   333 666


Q ss_pred             CCCCcceEEEcCccceeEecccccCCC-CcEEeccCCCCcccccCCC-CCCCccccceeEEEcCCCCcccccccccc---
Q 043667          154 SLPALCKLKIGGCKKVVWRSATDHLGS-QNSVVCRDTSNQVFLAGPL-KPQLPKLEELILSTKEQTYIWKSHDGLLQ---  228 (387)
Q Consensus       154 ~~~~L~~L~i~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~-~~~l~~L~~l~L~l~~~~~~~~~~~~~l~---  228 (387)
                      .+++|+.|+++++....++..+..+++ |++|+++++. +..++... ...+++|++  +.++++......|.. +.   
T Consensus       351 ~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~--L~Ls~N~l~~~~p~~-l~~~~  426 (636)
T 4eco_A          351 SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSA--IDFSYNEIGSVDGKN-FDPLD  426 (636)
T ss_dssp             EEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEE--EECCSSCTTTTTTCS-SCTTC
T ss_pred             CCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCE--EECcCCcCCCcchhh-hcccc
Confidence            778888898888766666666777788 9999988775 33554432 223447777  888877654444433 33   


Q ss_pred             ----cCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCC--------CCCccEEEec
Q 043667          229 ----DICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLS--------LSSLREIDIY  296 (387)
Q Consensus       229 ----~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~--------~~~L~~L~l~  296 (387)
                          .+++|++|+++++ .+..++..    .+..+    ++|++|+++++. ++.+|.....        +++|+.|+++
T Consensus       427 ~~~~~~~~L~~L~Ls~N-~l~~lp~~----~~~~l----~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls  496 (636)
T 4eco_A          427 PTPFKGINVSSINLSNN-QISKFPKE----LFSTG----SPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLR  496 (636)
T ss_dssp             SSCCCCCCEEEEECCSS-CCCSCCTH----HHHTT----CCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECC
T ss_pred             cccccCCCCCEEECcCC-ccCcCCHH----HHccC----CCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECc
Confidence                5668899999885 45566553    24444    889999998854 6677764332        2288999998


Q ss_pred             CCCCceecCCCCc---CCCceEEEeccCCCCCccccccccCCCCCcceEecccC------cccccccCC-CCCCCccEEe
Q 043667          297 DCSSLVSFPEVAL---PSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERC------RSLTYIAGV-QLPPSLKRLD  366 (387)
Q Consensus       297 ~c~~l~~~~~~~~---~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c------~~l~~~~~~-~~~~~L~~L~  366 (387)
                      + +.++.++....   .++|++|+++++. ++.+|..+..+++  |++|+++++      .-...+|.. ..+++|++|+
T Consensus       497 ~-N~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~--L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~  572 (636)
T 4eco_A          497 F-NKLTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSST--LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ  572 (636)
T ss_dssp             S-SCCCBCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCSS--CCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred             C-CcCCccChhhhhccCCCcCEEECCCCC-CCCcChhhhcCCC--CCEEECCCCcccccCcccccChHHHhcCCCCCEEE
Confidence            8 46777776543   3889999998854 6678887777777  999998653      223445544 5578899999


Q ss_pred             ecCCccccccccccc
Q 043667          367 IWNCDNIRTLTVEEG  381 (387)
Q Consensus       367 l~~C~~l~~l~~~~~  381 (387)
                      +++|. ++.+|..+.
T Consensus       573 Ls~N~-l~~ip~~~~  586 (636)
T 4eco_A          573 IGSND-IRKVNEKIT  586 (636)
T ss_dssp             CCSSC-CCBCCSCCC
T ss_pred             CCCCc-CCccCHhHh
Confidence            99855 588886654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.93  E-value=3.2e-24  Score=212.15  Aligned_cols=154  Identities=17%  Similarity=0.144  Sum_probs=77.9

Q ss_pred             CCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCC-
Q 043667          201 PQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVK-  279 (387)
Q Consensus       201 ~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~-  279 (387)
                      ..+++|++  +.+.++......+...++.+++|++|++++|......+.     .+..+    ++|++|++++|. ++. 
T Consensus       396 ~~l~~L~~--L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----~~~~l----~~L~~L~l~~n~-l~~~  463 (606)
T 3vq2_A          396 MGLEELQH--LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG-----IFLGL----TSLNTLKMAGNS-FKDN  463 (606)
T ss_dssp             TTCTTCCE--EECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT-----TTTTC----TTCCEEECTTCE-EGGG
T ss_pred             cCCCCCCe--eECCCCccCCccChhhhhccccCCEEECcCCCCCccchh-----hhcCC----CCCCEEECCCCc-CCCc
Confidence            34455555  555544332222222344555666666665433222221     23333    666666666543 322 


Q ss_pred             -cccccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCcc-ccccccCCCCCcceEecccCcccccccC
Q 043667          280 -LPQSSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSL-PEAWMCDTNSSLETLKIERCRSLTYIAG  355 (387)
Q Consensus       280 -~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l-~~~~~~~~~~~L~~L~l~~c~~l~~~~~  355 (387)
                       +|..+..+++|+.|++++| .++.++...+.  ++|++|++++|. +..+ |..+..+++  |++|++++| +++.+|.
T Consensus       464 ~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~--L~~L~l~~N-~l~~~p~  538 (606)
T 3vq2_A          464 TLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHNN-LLFLDSSHYNQLYS--LSTLDCSFN-RIETSKG  538 (606)
T ss_dssp             EECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CSCEEGGGTTTCTT--CCEEECTTS-CCCCEES
T ss_pred             chHHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCCc-CCCcCHHHccCCCc--CCEEECCCC-cCcccCH
Confidence             4445556666666666663 44444433222  566666666654 3333 455544555  666666664 4666665


Q ss_pred             C-CCC-CCccEEeecCCc
Q 043667          356 V-QLP-PSLKRLDIWNCD  371 (387)
Q Consensus       356 ~-~~~-~~L~~L~l~~C~  371 (387)
                      . ..+ ++|++|+++++|
T Consensus       539 ~~~~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          539 ILQHFPKSLAFFNLTNNS  556 (606)
T ss_dssp             CGGGSCTTCCEEECCSCC
T ss_pred             hHhhhcccCcEEEccCCC
Confidence            4 222 346666666644

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.93  E-value=5.9e-25  Score=222.81  Aligned_cols=323  Identities=16%  Similarity=0.099  Sum_probs=191.3

Q ss_pred             CCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCc
Q 043667           30 FSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGV  109 (387)
Q Consensus        30 l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i  109 (387)
                      +++|++|++++|...+.+|.++.+++|++|++.++.-...++..      +..+++|++|+++++.-......      .
T Consensus       199 l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~------l~~l~~L~~L~Ls~n~l~~~~~~------~  266 (768)
T 3rgz_A          199 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA------ISTCTELKLLNISSNQFVGPIPP------L  266 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHH------TTTCSSCCEEECCSSCCEESCCC------C
T ss_pred             CCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHH------HhcCCCCCEEECCCCcccCccCc------c
Confidence            66677777766644444555667777777777766321122222      23466677777666532211110      1


Q ss_pred             cCCCCcceEeeccCcccccccCCC----CCCccEEEeccCc---cccccccCCCCcceEEEcCccce-eEecc-cccCCC
Q 043667          110 EGFPKLRELHILRCSKLQGTFPEH----LPALEMLVIEACK---ELSVSVSSLPALCKLKIGGCKKV-VWRSA-TDHLGS  180 (387)
Q Consensus       110 ~~~~~L~~L~l~~~~~l~~~~~~~----~~~L~~L~l~~~~---~l~~~~~~~~~L~~L~i~~~~~~-~~~~~-~~~~~~  180 (387)
                       .+++|++|+++++ .+.+.+|..    +++|+.|+++++.   .++..++.+++|++|+++++... .++.. +..+++
T Consensus       267 -~l~~L~~L~L~~n-~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~  344 (768)
T 3rgz_A          267 -PLKSLQYLSLAEN-KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG  344 (768)
T ss_dssp             -CCTTCCEEECCSS-EEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTT
T ss_pred             -ccCCCCEEECcCC-ccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCC
Confidence             3556666666555 233334432    2556666665554   22234555555555555555433 12221 344555


Q ss_pred             CcEEeccCCC-------------------------CcccccCCC-CCCCccccceeEEEcCCCCcccccccccccCCCcc
Q 043667          181 QNSVVCRDTS-------------------------NQVFLAGPL-KPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLK  234 (387)
Q Consensus       181 L~~L~l~~~~-------------------------~l~~~~~~~-~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~  234 (387)
                      |++|+++++.                         -....+... ...+++|++  +.+.++.....+|.. ++.+++|+
T Consensus       345 L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~--L~L~~n~l~~~~p~~-l~~l~~L~  421 (768)
T 3rgz_A          345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE--LYLQNNGFTGKIPPT-LSNCSELV  421 (768)
T ss_dssp             CCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCE--EECCSSEEEEECCGG-GGGCTTCC
T ss_pred             CCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccE--EECCCCccccccCHH-HhcCCCCC
Confidence            5555555442                         111111111 111456666  777666544445544 66788888


Q ss_pred             EEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCce-ecCCC-CcCCC
Q 043667          235 KLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLV-SFPEV-ALPSK  312 (387)
Q Consensus       235 ~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~-~~~~~  312 (387)
                      +|+++++.-.+.++.     .+..+    ++|+.|++++|.....+|..+..+++|+.|++++| .++ .++.. .-.++
T Consensus       422 ~L~Ls~N~l~~~~p~-----~l~~l----~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~  491 (768)
T 3rgz_A          422 SLHLSFNYLSGTIPS-----SLGSL----SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN-DLTGEIPSGLSNCTN  491 (768)
T ss_dssp             EEECCSSEEESCCCG-----GGGGC----TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTT
T ss_pred             EEECcCCcccCcccH-----HHhcC----CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC-cccCcCCHHHhcCCC
Confidence            888888643334433     35555    88999999887644567777888889999999885 444 34422 12288


Q ss_pred             ceEEEeccCCCCCccccccccCCCCCcceEecccCcccccccCC-CCCCCccEEeecCCccccccccccc
Q 043667          313 LKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGV-QLPPSLKRLDIWNCDNIRTLTVEEG  381 (387)
Q Consensus       313 L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~C~~l~~l~~~~~  381 (387)
                      |++|++++|.....+|..+..+++  |++|++++|+-...+|.. ..+++|++|++++|+--..+|..++
T Consensus       492 L~~L~L~~N~l~~~~p~~~~~l~~--L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~  559 (768)
T 3rgz_A          492 LNWISLSNNRLTGEIPKWIGRLEN--LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF  559 (768)
T ss_dssp             CCEEECCSSCCCSCCCGGGGGCTT--CCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred             CCEEEccCCccCCcCChHHhcCCC--CCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh
Confidence            999999987755578888777777  999999997433356655 6678899999999876668886654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.93  E-value=1.6e-24  Score=219.46  Aligned_cols=351  Identities=16%  Similarity=0.168  Sum_probs=258.0

Q ss_pred             CCCCCCCcEEEEcCcCCCC------------------CCCccC--CccCCCccEEEeecCCCCCCCCC-cCCcCCCcEEE
Q 043667            2 LEPHKNLEQFCISGYRGAK------------------FPTWFG--DSSFSNLVTLKFEYCGMCPTLPS-VGQLPSLKHLA   60 (387)
Q Consensus         2 ~~~~~~L~~L~l~~~~~~~------------------~p~~~~--~~~l~~L~~L~l~~c~~~~~l~~-~~~l~~L~~L~   60 (387)
                      +...++|++|+++++....                  +|..++  .  +++|++|++++|...+.+|. ++++++|+.|+
T Consensus       444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~--L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~  521 (876)
T 4ecn_A          444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN--LKDLTDVELYNCPNMTQLPDFLYDLPELQSLN  521 (876)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG--CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEE
T ss_pred             HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhcc--CCCCCEEECcCCCCCccChHHHhCCCCCCEEE
Confidence            4467899999999999888                  899887  6  99999999999877788885 89999999999


Q ss_pred             ecCCCCceE--eCccccCCC-cccCCCCcceeeccccCCccccccCcCCC--CccCCCCcceEeeccCcccccccCC--C
Q 043667           61 VCGMTSVKR--LGSEFYGKG-AAIPFPRLETLRFDAMLGWEDWIPLRSGQ--GVEGFPKLRELHILRCSKLQGTFPE--H  133 (387)
Q Consensus        61 l~~~~~l~~--~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~--~i~~~~~L~~L~l~~~~~l~~~~~~--~  133 (387)
                      ++++..+..  +|..+..-. ....+++|++|++.++. +... +    .  .+..+++|+.|+++++ .+. .+|.  .
T Consensus       522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~i-p----~~~~l~~L~~L~~L~Ls~N-~l~-~lp~~~~  593 (876)
T 4ecn_A          522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEF-P----ASASLQKMVKLGLLDCVHN-KVR-HLEAFGT  593 (876)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBC-C----CHHHHTTCTTCCEEECTTS-CCC-BCCCCCT
T ss_pred             CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCcc-C----ChhhhhcCCCCCEEECCCC-Ccc-cchhhcC
Confidence            999953553  444321100 12456799999999854 3322 1    3  3557899999999987 444 5662  3


Q ss_pred             CCCccEEEeccCc--cccccccCCCC-cceEEEcCccceeEecccccCC--CCcEEeccCCCCcccccCCC----CCCCc
Q 043667          134 LPALEMLVIEACK--ELSVSVSSLPA-LCKLKIGGCKKVVWRSATDHLG--SQNSVVCRDTSNQVFLAGPL----KPQLP  204 (387)
Q Consensus       134 ~~~L~~L~l~~~~--~l~~~~~~~~~-L~~L~i~~~~~~~~~~~~~~~~--~L~~L~l~~~~~l~~~~~~~----~~~l~  204 (387)
                      +++|+.|+++++.  .++..+..+++ |+.|+++++....++..+...+  +|+.|+++++.-...++...    .-.++
T Consensus       594 L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~  673 (876)
T 4ecn_A          594 NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI  673 (876)
T ss_dssp             TSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred             CCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence            6789999998876  34456778888 9999999987555665555544  49999999875433322221    11344


Q ss_pred             cccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHH---HhhhhhccCCccEEEeccCCCCCCcc
Q 043667          205 KLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQ---QQQLCELSCRLEYLRLRYCKGLVKLP  281 (387)
Q Consensus       205 ~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~---~~~l~~~~~~L~~L~l~~c~~l~~~~  281 (387)
                      +|+.  |.++++. +..+|..++..+++|+.|+++++ .+..++...+...   +..+    ++|+.|++++| .++.+|
T Consensus       674 ~L~~--L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl----~~L~~L~Ls~N-~L~~lp  744 (876)
T 4ecn_A          674 NAST--VTLSYNE-IQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNT----YLLTTIDLRFN-KLTSLS  744 (876)
T ss_dssp             CEEE--EECCSSC-CCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTG----GGCCEEECCSS-CCCCCC
T ss_pred             CcCE--EEccCCc-CCccCHHHHccCCCCCEEECCCC-cCCccChHHhcccccccccc----CCccEEECCCC-CCccch
Confidence            7777  8888765 55788776678899999999986 5566665321100   1112    48999999986 577899


Q ss_pred             cccC--CCCCccEEEecCCCCceecCCCCcC-CCceEEEecc------CCCCCccccccccCCCCCcceEecccCccccc
Q 043667          282 QSSL--SLSSLREIDIYDCSSLVSFPEVALP-SKLKKIEIRK------CDALKSLPEAWMCDTNSSLETLKIERCRSLTY  352 (387)
Q Consensus       282 ~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~-~~L~~L~l~~------c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~  352 (387)
                      ..+.  .+++|+.|++++ +.++.+|..... ++|+.|++++      +.....+|..+..+++  |++|++++| .++.
T Consensus       745 ~~l~~~~l~~L~~L~Ls~-N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~--L~~L~Ls~N-~L~~  820 (876)
T 4ecn_A          745 DDFRATTLPYLSNMDVSY-NCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS--LIQLQIGSN-DIRK  820 (876)
T ss_dssp             GGGSTTTCTTCCEEECCS-SCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSS--CCEEECCSS-CCCB
T ss_pred             HHhhhccCCCcCEEEeCC-CCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCC--CCEEECCCC-CCCc
Confidence            8886  899999999998 477777643322 8999999976      4445678888877888  999999997 6788


Q ss_pred             ccCCCCCCCccEEeecCCccccccc
Q 043667          353 IAGVQLPPSLKRLDIWNCDNIRTLT  377 (387)
Q Consensus       353 ~~~~~~~~~L~~L~l~~C~~l~~l~  377 (387)
                      +|.. ..++|+.|++++|+ +.++.
T Consensus       821 Ip~~-l~~~L~~LdLs~N~-l~~i~  843 (876)
T 4ecn_A          821 VDEK-LTPQLYILDIADNP-NISID  843 (876)
T ss_dssp             CCSC-CCSSSCEEECCSCT-TCEEE
T ss_pred             cCHh-hcCCCCEEECCCCC-CCccC
Confidence            8875 45799999999976 55554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.93  E-value=6.7e-24  Score=209.83  Aligned_cols=65  Identities=15%  Similarity=0.072  Sum_probs=40.7

Q ss_pred             CCCCCCCcEEEEcCcCCCCC-CCccCCccCCCccEEEeecCCCCCCCC--CcCCcCCCcEEEecCCCCceEe
Q 043667            2 LEPHKNLEQFCISGYRGAKF-PTWFGDSSFSNLVTLKFEYCGMCPTLP--SVGQLPSLKHLAVCGMTSVKRL   70 (387)
Q Consensus         2 ~~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~l~--~~~~l~~L~~L~l~~~~~l~~~   70 (387)
                      |...++|++|+++++.+..+ |..++.  +++|++|++++| .+..++  .++.+++|++|++.++ .+..+
T Consensus        53 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~i~~l  120 (606)
T 3t6q_A           53 FSRLINLTFLDLTRCQIYWIHEDTFQS--QHRLDTLVLTAN-PLIFMAETALSGPKALKHLFFIQT-GISSI  120 (606)
T ss_dssp             STTCTTCSEEECTTCCCCEECTTTTTT--CTTCCEEECTTC-CCSEECTTTTSSCTTCCEEECTTS-CCSCG
T ss_pred             hccCccceEEECCCCccceeChhhccC--ccccCeeeCCCC-cccccChhhhcccccccEeecccc-CcccC
Confidence            45567777777777766554 555655  777777777765 444443  2666777777777666 34443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.92  E-value=4.4e-23  Score=203.92  Aligned_cols=151  Identities=15%  Similarity=0.042  Sum_probs=105.8

Q ss_pred             CCCCcEEEEcCcCCCCC-CCccCCccCCCccEEEeecCCCCCCCC--CcCCcCCCcEEEecCCCCceEeCccccCCCccc
Q 043667            5 HKNLEQFCISGYRGAKF-PTWFGDSSFSNLVTLKFEYCGMCPTLP--SVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAI   81 (387)
Q Consensus         5 ~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~l~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~   81 (387)
                      ++++++|+++++.+..+ |..++.  +++|++|++++| .+..++  .++.+++|++|+++++ .+..+....     +.
T Consensus        32 ~~~l~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-----~~  102 (606)
T 3t6q_A           32 PNSTECLEFSFNVLPTIQNTTFSR--LINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETA-----LS  102 (606)
T ss_dssp             CTTCCEEECTTCCCSEECTTTSTT--CTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-CCSEECTTT-----TS
T ss_pred             CCcCcEEEccCCccCcCChhHhcc--CccceEEECCCC-ccceeChhhccCccccCeeeCCCC-cccccChhh-----hc
Confidence            46899999999998887 667776  999999999997 555553  3899999999999999 555554433     35


Q ss_pred             CCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCC--CCCCccEEEeccCccc---cccccCCC
Q 043667           82 PFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPE--HLPALEMLVIEACKEL---SVSVSSLP  156 (387)
Q Consensus        82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~--~~~~L~~L~l~~~~~l---~~~~~~~~  156 (387)
                      .+++|++|++.++. +.....    ..+..+++|++|+++++.......|.  .+++|+.|+++++...   ...++.++
T Consensus       103 ~l~~L~~L~L~~n~-i~~l~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  177 (606)
T 3t6q_A          103 GPKALKHLFFIQTG-ISSIDF----IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ  177 (606)
T ss_dssp             SCTTCCEEECTTSC-CSCGGG----SCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTT
T ss_pred             ccccccEeeccccC-cccCCc----chhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhc
Confidence            68999999999754 333322    34456889999999887332212232  2678888888876532   13456667


Q ss_pred             Ccc--eEEEcCccce
Q 043667          157 ALC--KLKIGGCKKV  169 (387)
Q Consensus       157 ~L~--~L~i~~~~~~  169 (387)
                      +|+  .|+++++...
T Consensus       178 ~L~~l~L~l~~n~l~  192 (606)
T 3t6q_A          178 QATNLSLNLNGNDIA  192 (606)
T ss_dssp             TCCSEEEECTTCCCC
T ss_pred             ccceeEEecCCCccC
Confidence            777  5666665433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.92  E-value=4.3e-23  Score=197.46  Aligned_cols=324  Identities=13%  Similarity=0.139  Sum_probs=159.2

Q ss_pred             CCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCC
Q 043667            6 KNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPR   85 (387)
Q Consensus         6 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~   85 (387)
                      ++++.|++.++....+|. +..  +++|++|++++| .++.++.++.+++|++|++.++ .+..++.       ...+++
T Consensus        46 ~~l~~L~l~~~~i~~l~~-~~~--l~~L~~L~Ls~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~-------~~~l~~  113 (466)
T 1o6v_A           46 DQVTTLQADRLGIKSIDG-VEY--LNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNN-QIADITP-------LANLTN  113 (466)
T ss_dssp             HTCCEEECCSSCCCCCTT-GGG--CTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCGG-------GTTCTT
T ss_pred             ccccEEecCCCCCccCcc-hhh--hcCCCEEECCCC-ccCCchhhhccccCCEEECCCC-ccccChh-------hcCCCC
Confidence            456666666666655554 332  666666666664 4555555666666666666666 3333332       234566


Q ss_pred             cceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccC--CCCCCccEEE---------------------e
Q 043667           86 LETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFP--EHLPALEMLV---------------------I  142 (387)
Q Consensus        86 L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~--~~~~~L~~L~---------------------l  142 (387)
                      |++|++.++. +...      ..+..+++|++|+++++. +. .++  ..+++|+.|.                     +
T Consensus       114 L~~L~L~~n~-l~~~------~~~~~l~~L~~L~l~~n~-l~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l  184 (466)
T 1o6v_A          114 LTGLTLFNNQ-ITDI------DPLKNLTNLNRLELSSNT-IS-DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI  184 (466)
T ss_dssp             CCEEECCSSC-CCCC------GGGTTCTTCSEEEEEEEE-EC-CCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEEC
T ss_pred             CCEEECCCCC-CCCC------hHHcCCCCCCEEECCCCc-cC-CChhhccCCcccEeecCCcccCchhhccCCCCCEEEC
Confidence            6666666542 2222      112345566666665542 21 111  2244444444                     4


Q ss_pred             ccCcccc-ccccCCCCcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCccc
Q 043667          143 EACKELS-VSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWK  221 (387)
Q Consensus       143 ~~~~~l~-~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~  221 (387)
                      +++..-. ..+..+++|++|+++++....... +..+++|++|+++++. +..++.  ...+++|++  +.++++.. ..
T Consensus       185 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~--L~l~~n~l-~~  257 (466)
T 1o6v_A          185 SSNKVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQ-LKDIGT--LASLTNLTD--LDLANNQI-SN  257 (466)
T ss_dssp             CSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSE--EECCSSCC-CC
T ss_pred             cCCcCCCChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCC-cccchh--hhcCCCCCE--EECCCCcc-cc
Confidence            4443111 223344445555544443222211 3334455555554432 111111  223444444  55554432 22


Q ss_pred             ccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCc
Q 043667          222 SHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSL  301 (387)
Q Consensus       222 ~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l  301 (387)
                      ++.  +..+++|++|+++++ .+..+++      +..+    ++|++|++++|. ++.+++ +..+++|+.|++++| .+
T Consensus       258 ~~~--~~~l~~L~~L~l~~n-~l~~~~~------~~~l----~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n-~l  321 (466)
T 1o6v_A          258 LAP--LSGLTKLTELKLGAN-QISNISP------LAGL----TALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFN-NI  321 (466)
T ss_dssp             CGG--GTTCTTCSEEECCSS-CCCCCGG------GTTC----TTCSEEECCSSC-CSCCGG-GGGCTTCSEEECCSS-CC
T ss_pred             chh--hhcCCCCCEEECCCC-ccCcccc------ccCC----CccCeEEcCCCc-ccCchh-hcCCCCCCEEECcCC-cC
Confidence            221  344555666666553 2222221      2222    666666666543 444443 456666666666664 44


Q ss_pred             eecCCCCcCCCceEEEeccCCCCCccccccccCCCCCcceEecccCcccccccCCCCCCCccEEeecCCccccccccc
Q 043667          302 VSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGVQLPPSLKRLDIWNCDNIRTLTVE  379 (387)
Q Consensus       302 ~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~  379 (387)
                      +.++.....++|++|++++| .+..++ .+..+++  |+.|++++| .++.++....+++|++|++++|+ ++.+|..
T Consensus       322 ~~~~~~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~--L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-~~~~p~~  393 (466)
T 1o6v_A          322 SDISPVSSLTKLQRLFFYNN-KVSDVS-SLANLTN--INWLSAGHN-QISDLTPLANLTRITQLGLNDQA-WTNAPVN  393 (466)
T ss_dssp             SCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCTT--CCEEECCSS-CCCBCGGGTTCTTCCEEECCCEE-EECCCBC
T ss_pred             CCchhhccCccCCEeECCCC-ccCCch-hhccCCC--CCEEeCCCC-ccCccchhhcCCCCCEEeccCCc-ccCCchh
Confidence            44433223366777777665 355553 3444555  777777775 45544444455677777777743 5555544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.92  E-value=2e-23  Score=199.83  Aligned_cols=311  Identities=17%  Similarity=0.206  Sum_probs=215.2

Q ss_pred             CCCCCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccC
Q 043667            3 EPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIP   82 (387)
Q Consensus         3 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~   82 (387)
                      ..+++|++|+++++....+|. +..  +++|++|++++| .+..++.++.+++|++|+++++ .++.++.       +..
T Consensus        65 ~~l~~L~~L~Ls~n~l~~~~~-~~~--l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~-------~~~  132 (466)
T 1o6v_A           65 EYLNNLTQINFSNNQLTDITP-LKN--LTKLVDILMNNN-QIADITPLANLTNLTGLTLFNN-QITDIDP-------LKN  132 (466)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG-GTT--CTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCGG-------GTT
T ss_pred             hhhcCCCEEECCCCccCCchh-hhc--cccCCEEECCCC-ccccChhhcCCCCCCEEECCCC-CCCCChH-------HcC
Confidence            456788888888888777765 554  788888888775 5566666777888888888777 4544432       234


Q ss_pred             CCCcceeeccccCCccccccC---------------cCCCCccCCCCcceEeeccCccccc-ccCCCCCCccEEEeccCc
Q 043667           83 FPRLETLRFDAMLGWEDWIPL---------------RSGQGVEGFPKLRELHILRCSKLQG-TFPEHLPALEMLVIEACK  146 (387)
Q Consensus        83 ~~~L~~L~l~~~~~l~~~~~~---------------~~~~~i~~~~~L~~L~l~~~~~l~~-~~~~~~~~L~~L~l~~~~  146 (387)
                      +++|++|+++++. +.....+               .....+..+++|+.|+++++. +.+ .....+++|+.|+++++.
T Consensus       133 l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~  210 (466)
T 1o6v_A          133 LTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDISVLAKLTNLESLIATNNQ  210 (466)
T ss_dssp             CTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSC
T ss_pred             CCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCChhhccCCCCCEEEecCCc
Confidence            6666666665432 1111000               000123357888999998774 331 112357899999999886


Q ss_pred             ccc-ccccCCCCcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCccccccc
Q 043667          147 ELS-VSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDG  225 (387)
Q Consensus       147 ~l~-~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~  225 (387)
                      ... ..++.+++|+.|+++++....+ ..+..+++|++|+++++.-.. .+.  ...+++|++  +.++++. +..++. 
T Consensus       211 l~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~--L~l~~n~-l~~~~~-  282 (466)
T 1o6v_A          211 ISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISN-LAP--LSGLTKLTE--LKLGANQ-ISNISP-  282 (466)
T ss_dssp             CCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCSE--EECCSSC-CCCCGG-
T ss_pred             ccccccccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCcccc-chh--hhcCCCCCE--EECCCCc-cCcccc-
Confidence            332 3467789999999998764443 456778999999999875332 222  456788888  9998765 444443 


Q ss_pred             ccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecC
Q 043667          226 LLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFP  305 (387)
Q Consensus       226 ~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~  305 (387)
                       +..+++|++|+++++ .+..+++      +..+    ++|++|++++|. ++.+++ +..+++|+.|++++| .++.++
T Consensus       283 -~~~l~~L~~L~L~~n-~l~~~~~------~~~l----~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~  347 (466)
T 1o6v_A          283 -LAGLTALTNLELNEN-QLEDISP------ISNL----KNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFYNN-KVSDVS  347 (466)
T ss_dssp             -GTTCTTCSEEECCSS-CCSCCGG------GGGC----TTCSEEECCSSC-CSCCGG-GGGCTTCCEEECCSS-CCCCCG
T ss_pred             -ccCCCccCeEEcCCC-cccCchh------hcCC----CCCCEEECcCCc-CCCchh-hccCccCCEeECCCC-ccCCch
Confidence             567999999999996 4555443      3444    999999999974 666665 678999999999985 777776


Q ss_pred             CCCcCCCceEEEeccCCCCCccccccccCCCCCcceEecccCcccccccC
Q 043667          306 EVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAG  355 (387)
Q Consensus       306 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~  355 (387)
                      .....++|+.|++++|. +.+++. +..+++  |++|++++| .++.+|.
T Consensus       348 ~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~--L~~L~l~~n-~~~~~p~  392 (466)
T 1o6v_A          348 SLANLTNINWLSAGHNQ-ISDLTP-LANLTR--ITQLGLNDQ-AWTNAPV  392 (466)
T ss_dssp             GGTTCTTCCEEECCSSC-CCBCGG-GTTCTT--CCEEECCCE-EEECCCB
T ss_pred             hhccCCCCCEEeCCCCc-cCccch-hhcCCC--CCEEeccCC-cccCCch
Confidence            44444899999999875 665554 556777  999999996 6666554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.92  E-value=4.4e-24  Score=208.61  Aligned_cols=105  Identities=17%  Similarity=0.235  Sum_probs=66.7

Q ss_pred             CCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCCCccccccccCCCCCcceEe
Q 043667          264 CRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLK  343 (387)
Q Consensus       264 ~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~  343 (387)
                      ++|++|++++| .++.+|..+..+++|+.|+++++ .++.++.. .+++|++|++++| .++.++..   ++.  |++|+
T Consensus       387 ~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N-~l~~l~~~-~~~~L~~L~Ls~N-~l~~~~~~---l~~--L~~L~  457 (549)
T 2z81_A          387 KNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSST-GIRVVKTC-IPQTLEVLDVSNN-NLDSFSLF---LPR--LQELY  457 (549)
T ss_dssp             TTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTS-CCSCCCTT-SCTTCSEEECCSS-CCSCCCCC---CTT--CCEEE
T ss_pred             CCCCEEECCCC-CCccCChhhcccccccEEECCCC-Ccccccch-hcCCceEEECCCC-Chhhhccc---CCh--hcEEE
Confidence            67777777765 46666766666777777777763 45555432 2356777777664 35554422   445  77788


Q ss_pred             cccCcccccccCCCCCCCccEEeecCCccccccccc
Q 043667          344 IERCRSLTYIAGVQLPPSLKRLDIWNCDNIRTLTVE  379 (387)
Q Consensus       344 l~~c~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~  379 (387)
                      ++++ +++.+|....+++|++|+++++ +++.+|.+
T Consensus       458 Ls~N-~l~~ip~~~~l~~L~~L~Ls~N-~l~~~~~~  491 (549)
T 2z81_A          458 ISRN-KLKTLPDASLFPVLLVMKISRN-QLKSVPDG  491 (549)
T ss_dssp             CCSS-CCSSCCCGGGCTTCCEEECCSS-CCCCCCTT
T ss_pred             CCCC-ccCcCCCcccCccCCEEecCCC-ccCCcCHH
Confidence            8775 6777765555677888888774 56666644

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.92  E-value=8.5e-24  Score=214.14  Aligned_cols=327  Identities=15%  Similarity=0.145  Sum_probs=241.7

Q ss_pred             CCCccCCccCCCccEEEeecCCCCCC------------------CCC-cC--CcCCCcEEEecCCCCceEeCccccCCCc
Q 043667           21 FPTWFGDSSFSNLVTLKFEYCGMCPT------------------LPS-VG--QLPSLKHLAVCGMTSVKRLGSEFYGKGA   79 (387)
Q Consensus        21 ~p~~~~~~~l~~L~~L~l~~c~~~~~------------------l~~-~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~   79 (387)
                      +|..++.  +++|++|++++| .+..                  +|. ++  ++++|++|++++|.....+|..      
T Consensus       440 IP~~l~~--L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~------  510 (876)
T 4ecn_A          440 ISKAIQR--LTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF------  510 (876)
T ss_dssp             ECGGGGG--CTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG------
T ss_pred             hhHHHhc--CCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH------
Confidence            6777776  999999999997 5666                  775 66  9999999999999666666654      


Q ss_pred             ccCCCCcceeeccccCCccc-cccCcCCC-------CccCCCCcceEeeccCcccccccCC-----CCCCccEEEeccCc
Q 043667           80 AIPFPRLETLRFDAMLGWED-WIPLRSGQ-------GVEGFPKLRELHILRCSKLQGTFPE-----HLPALEMLVIEACK  146 (387)
Q Consensus        80 ~~~~~~L~~L~l~~~~~l~~-~~~~~~~~-------~i~~~~~L~~L~l~~~~~l~~~~~~-----~~~~L~~L~l~~~~  146 (387)
                      +..+++|++|+++++..+.. ..+    .       ....+++|+.|+++++ .+. .+|.     .+++|+.|+++++.
T Consensus       511 l~~L~~L~~L~Ls~N~~lsg~~iP----~~i~~L~~~~~~l~~L~~L~Ls~N-~L~-~ip~~~~l~~L~~L~~L~Ls~N~  584 (876)
T 4ecn_A          511 LYDLPELQSLNIACNRGISAAQLK----ADWTRLADDEDTGPKIQIFYMGYN-NLE-EFPASASLQKMVKLGLLDCVHNK  584 (876)
T ss_dssp             GGGCSSCCEEECTTCTTSCHHHHH----HHHHHHHHCTTTTTTCCEEECCSS-CCC-BCCCHHHHTTCTTCCEEECTTSC
T ss_pred             HhCCCCCCEEECcCCCCcccccch----HHHHhhhhcccccCCccEEEeeCC-cCC-ccCChhhhhcCCCCCEEECCCCC
Confidence            46789999999998763443 111    1       1124679999999987 455 6776     47899999999876


Q ss_pred             --cccccccCCCCcceEEEcCccceeEecccccCCC-CcEEeccCCCCcccccCCC-CCCCccccceeEEEcCCCCcccc
Q 043667          147 --ELSVSVSSLPALCKLKIGGCKKVVWRSATDHLGS-QNSVVCRDTSNQVFLAGPL-KPQLPKLEELILSTKEQTYIWKS  222 (387)
Q Consensus       147 --~l~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~-~~~l~~L~~l~L~l~~~~~~~~~  222 (387)
                        .++ .++.+++|+.|+++++....++..+..+++ |++|+++++. +..++... ....++|+.  +.++++.....+
T Consensus       585 l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~--L~Ls~N~l~g~i  660 (876)
T 4ecn_A          585 VRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGS--VDFSYNKIGSEG  660 (876)
T ss_dssp             CCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEE--EECCSSCTTTTS
T ss_pred             cccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCE--EECcCCcCCCcc
Confidence              343 678889999999999876667777778888 9999999876 44555432 122345888  999887654333


Q ss_pred             ccc--ccc--cCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCC--------CCCc
Q 043667          223 HDG--LLQ--DICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLS--------LSSL  290 (387)
Q Consensus       223 ~~~--~l~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~--------~~~L  290 (387)
                      |..  .++  .+++|+.|+++++ .+..++..    .+..+    ++|+.|+++++ .++.+|..+..        +++|
T Consensus       661 p~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~----~~~~l----~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L  730 (876)
T 4ecn_A          661 RNISCSMDDYKGINASTVTLSYN-EIQKFPTE----LFATG----SPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLL  730 (876)
T ss_dssp             SSCSSCTTTCCCCCEEEEECCSS-CCCSCCHH----HHHTT----CCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGC
T ss_pred             ccchhhhccccCCCcCEEEccCC-cCCccCHH----HHccC----CCCCEEECCCC-cCCccChHHhccccccccccCCc
Confidence            211  012  3458999999985 55566653    24445    99999999986 57788875443        2389


Q ss_pred             cEEEecCCCCceecCCCCc---CCCceEEEeccCCCCCccccccccCCCCCcceEecccC------cccccccCC-CCCC
Q 043667          291 REIDIYDCSSLVSFPEVAL---PSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERC------RSLTYIAGV-QLPP  360 (387)
Q Consensus       291 ~~L~l~~c~~l~~~~~~~~---~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c------~~l~~~~~~-~~~~  360 (387)
                      +.|++++| .++.++....   .++|+.|++++| .+..+|..+..+++  |+.|+++++      .-...+|.. ..++
T Consensus       731 ~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~--L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~  806 (876)
T 4ecn_A          731 TTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQ--LKAFGIRHQRDAEGNRILRQWPTGITTCP  806 (876)
T ss_dssp             CEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTT--CCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred             cEEECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCC--CCEEECCCCCCcccccccccChHHHhcCC
Confidence            99999995 7888886543   389999999986 47789988888888  999999873      223455544 5678


Q ss_pred             CccEEeecCCccccccccccc
Q 043667          361 SLKRLDIWNCDNIRTLTVEEG  381 (387)
Q Consensus       361 ~L~~L~l~~C~~l~~l~~~~~  381 (387)
                      +|++|++++|. ++.+|..++
T Consensus       807 ~L~~L~Ls~N~-L~~Ip~~l~  826 (876)
T 4ecn_A          807 SLIQLQIGSND-IRKVDEKLT  826 (876)
T ss_dssp             SCCEEECCSSC-CCBCCSCCC
T ss_pred             CCCEEECCCCC-CCccCHhhc
Confidence            99999999965 599997654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.92  E-value=4.4e-23  Score=189.76  Aligned_cols=300  Identities=16%  Similarity=0.141  Sum_probs=172.3

Q ss_pred             CCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCc
Q 043667           30 FSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGV  109 (387)
Q Consensus        30 l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i  109 (387)
                      +++|++|+++++ .+..++.++.+++|++|+++++ .+..++.       +..+++|++|++.++ .+...      ..+
T Consensus        43 l~~L~~L~l~~~-~i~~~~~~~~~~~L~~L~l~~n-~i~~~~~-------~~~l~~L~~L~L~~n-~i~~~------~~~  106 (347)
T 4fmz_A           43 LESITKLVVAGE-KVASIQGIEYLTNLEYLNLNGN-QITDISP-------LSNLVKLTNLYIGTN-KITDI------SAL  106 (347)
T ss_dssp             HTTCSEEECCSS-CCCCCTTGGGCTTCCEEECCSS-CCCCCGG-------GTTCTTCCEEECCSS-CCCCC------GGG
T ss_pred             cccccEEEEeCC-ccccchhhhhcCCccEEEccCC-ccccchh-------hhcCCcCCEEEccCC-cccCc------hHH
Confidence            444445555443 3344444444445555555444 3333322       123444445544443 11111      112


Q ss_pred             cCCCCcceEeeccCcccccccCCCCCCccEEEeccCcccc--ccccCCCCcceEEEcCccceeEecccccCCCCcEEecc
Q 043667          110 EGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELS--VSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCR  187 (387)
Q Consensus       110 ~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~  187 (387)
                      ..+++|++|+++++.-........+++|+.|++++|....  ..+..+++|++|+++++....... +..+++|++|+++
T Consensus       107 ~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~  185 (347)
T 4fmz_A          107 QNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLN  185 (347)
T ss_dssp             TTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECT
T ss_pred             cCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEcc
Confidence            2345555555554421110001234555555555553222  335566667777766654433322 4556777777777


Q ss_pred             CCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCcc
Q 043667          188 DTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLE  267 (387)
Q Consensus       188 ~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~  267 (387)
                      ++. +..++.  ...+++|+.  +.+.++. +..++.  ++.+++|++|++++| .+..++.      +..+    ++|+
T Consensus       186 ~n~-l~~~~~--~~~l~~L~~--L~l~~n~-l~~~~~--~~~~~~L~~L~l~~n-~l~~~~~------~~~l----~~L~  246 (347)
T 4fmz_A          186 YNQ-IEDISP--LASLTSLHY--FTAYVNQ-ITDITP--VANMTRLNSLKIGNN-KITDLSP------LANL----SQLT  246 (347)
T ss_dssp             TSC-CCCCGG--GGGCTTCCE--EECCSSC-CCCCGG--GGGCTTCCEEECCSS-CCCCCGG------GTTC----TTCC
T ss_pred             CCc-cccccc--ccCCCccce--eecccCC-CCCCch--hhcCCcCCEEEccCC-ccCCCcc------hhcC----CCCC
Confidence            653 222221  234556666  6666653 333332  567889999999986 4444432      3333    8999


Q ss_pred             EEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCCCccccccccCCCCCcceEecccC
Q 043667          268 YLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERC  347 (387)
Q Consensus       268 ~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c  347 (387)
                      +|++++| .++.++ .+..+++|+.|++++| .++.++.....++|++|++++|.--...+..+..+++  |++|++++|
T Consensus       247 ~L~l~~n-~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~L~~n  321 (347)
T 4fmz_A          247 WLEIGTN-QISDIN-AVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN--LTTLFLSQN  321 (347)
T ss_dssp             EEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTT--CSEEECCSS
T ss_pred             EEECCCC-ccCCCh-hHhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCcCCCcChhHhhcccc--CCEEEccCC
Confidence            9999886 466664 5778899999999985 6777654444489999999987633344455666777  999999997


Q ss_pred             cccccccCCCCCCCccEEeecCCc
Q 043667          348 RSLTYIAGVQLPPSLKRLDIWNCD  371 (387)
Q Consensus       348 ~~l~~~~~~~~~~~L~~L~l~~C~  371 (387)
                       .++.++....+++|++|++++|+
T Consensus       322 -~l~~~~~~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          322 -HITDIRPLASLSKMDSADFANQV  344 (347)
T ss_dssp             -SCCCCGGGGGCTTCSEESSSCC-
T ss_pred             -ccccccChhhhhccceeehhhhc
Confidence             57776655567899999999865

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.92  E-value=9.8e-23  Score=201.47  Aligned_cols=88  Identities=22%  Similarity=0.233  Sum_probs=49.5

Q ss_pred             ccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCc--cccccccCCCCCcceEecccCcccccccCC--
Q 043667          283 SSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKS--LPEAWMCDTNSSLETLKIERCRSLTYIAGV--  356 (387)
Q Consensus       283 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~--l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--  356 (387)
                      .+..+++|+.|++++| .++......+.  ++|++|++++|. +..  +|..+..+++  |++|++++| +++.++..  
T Consensus       419 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~--L~~L~Ls~n-~l~~~~~~~~  493 (606)
T 3vq2_A          419 AFLSLEKLLYLDISYT-NTKIDFDGIFLGLTSLNTLKMAGNS-FKDNTLSNVFANTTN--LTFLDLSKC-QLEQISWGVF  493 (606)
T ss_dssp             TTTTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTT--CCEEECTTS-CCCEECTTTT
T ss_pred             hhhccccCCEEECcCC-CCCccchhhhcCCCCCCEEECCCCc-CCCcchHHhhccCCC--CCEEECCCC-cCCccChhhh
Confidence            3445555555555553 33332222222  566666666654 332  4555555566  777777775 56555443  


Q ss_pred             CCCCCccEEeecCCcccccc
Q 043667          357 QLPPSLKRLDIWNCDNIRTL  376 (387)
Q Consensus       357 ~~~~~L~~L~l~~C~~l~~l  376 (387)
                      ..+++|++|++++|. ++.+
T Consensus       494 ~~l~~L~~L~Ls~N~-l~~~  512 (606)
T 3vq2_A          494 DTLHRLQLLNMSHNN-LLFL  512 (606)
T ss_dssp             TTCTTCCEEECCSSC-CSCE
T ss_pred             cccccCCEEECCCCc-CCCc
Confidence            456778888888764 4554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.91  E-value=3.7e-22  Score=199.99  Aligned_cols=58  Identities=12%  Similarity=0.058  Sum_probs=37.0

Q ss_pred             CCCCCcEEEEcCcCCCCCCC-ccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCC
Q 043667            4 PHKNLEQFCISGYRGAKFPT-WFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGM   64 (387)
Q Consensus         4 ~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~   64 (387)
                      ..++||+|+++++....+|. .++.  +++|++|++++| .+..+++  ++.+++|++|++.++
T Consensus        71 ~l~~L~~L~L~~n~l~~l~~~~~~~--l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n  131 (680)
T 1ziw_A           71 KLPMLKVLNLQHNELSQLSDKTFAF--CTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHN  131 (680)
T ss_dssp             HCTTCCEEECCSSCCCCCCTTTTTT--CTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSS
T ss_pred             cccCcCEEECCCCccCccChhhhcc--CCCCCEEECCCC-ccCccChhHccccCCCCEEECCCC
Confidence            34667777777776666665 3554  677777777765 4455542  666667777776666

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.91  E-value=3.6e-23  Score=202.14  Aligned_cols=346  Identities=17%  Similarity=0.189  Sum_probs=191.1

Q ss_pred             CCCcEEEEcCcCCCCC-CCccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccC
Q 043667            6 KNLEQFCISGYRGAKF-PTWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIP   82 (387)
Q Consensus         6 ~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~   82 (387)
                      ++|++|+++++....+ |..+..  +++|++|++++| .++.+++  ++.+++|++|+++++ .+..++...     +..
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-----~~~   96 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRA--CANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSW-----FGP   96 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSS--CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHH-----HTT
T ss_pred             CCccEEECcCCccCccChhhhhc--CCcccEEECCCC-CcCccChhhccccccCCEEECCCC-ccCccCHHH-----hcc
Confidence            4677777777776655 445555  777777777775 5555553  677777777777777 455554432     234


Q ss_pred             CCCcceeeccccCCcccc-ccCcCCCCccCCCCcceEeeccCcccccccC----CCCCCccEEEeccCccc---cccccC
Q 043667           83 FPRLETLRFDAMLGWEDW-IPLRSGQGVEGFPKLRELHILRCSKLQGTFP----EHLPALEMLVIEACKEL---SVSVSS  154 (387)
Q Consensus        83 ~~~L~~L~l~~~~~l~~~-~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~----~~~~~L~~L~l~~~~~l---~~~~~~  154 (387)
                      +++|++|+++++. +... ..    ..+..+++|++|+++++..+. .+|    ..+++|+.|+++++...   +..++.
T Consensus        97 l~~L~~L~Ls~n~-l~~~~~~----~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  170 (549)
T 2z81_A           97 LSSLKYLNLMGNP-YQTLGVT----SLFPNLTNLQTLRIGNVETFS-EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS  170 (549)
T ss_dssp             CTTCCEEECTTCC-CSSSCSS----CSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred             CCCCcEEECCCCc-ccccchh----hhhhccCCccEEECCCCcccc-ccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence            6677777776543 2211 11    223346666666666653232 222    22455666666554321   122333


Q ss_pred             ------------------------CCCcceEEEcCccceeEe----ccc----------------------------ccC
Q 043667          155 ------------------------LPALCKLKIGGCKKVVWR----SAT----------------------------DHL  178 (387)
Q Consensus       155 ------------------------~~~L~~L~i~~~~~~~~~----~~~----------------------------~~~  178 (387)
                                              +++|++|+++++......    ...                            ..+
T Consensus       171 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~  250 (549)
T 2z81_A          171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI  250 (549)
T ss_dssp             CSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGC
T ss_pred             cccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhh
Confidence                                    455555555544321110    001                            112


Q ss_pred             CCCcEEeccCCCCcc--cccC---CCCCCCc-----------------------------cccceeEEEcCCCCcccccc
Q 043667          179 GSQNSVVCRDTSNQV--FLAG---PLKPQLP-----------------------------KLEELILSTKEQTYIWKSHD  224 (387)
Q Consensus       179 ~~L~~L~l~~~~~l~--~~~~---~~~~~l~-----------------------------~L~~l~L~l~~~~~~~~~~~  224 (387)
                      ++|+.+++.+|....  .+..   .....++                             +|++  +.+.++. +..+|.
T Consensus       251 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~--L~l~~n~-l~~ip~  327 (549)
T 2z81_A          251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR--ITVENSK-VFLVPC  327 (549)
T ss_dssp             TTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCE--EEEESSC-CCCCCH
T ss_pred             ccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceE--EEeccCc-cccCCH
Confidence            233333333321100  0000   0012222                             2333  4444332 344555


Q ss_pred             cccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCccc---ccCCCCCccEEEecCCCCc
Q 043667          225 GLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQ---SSLSLSSLREIDIYDCSSL  301 (387)
Q Consensus       225 ~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~~L~~L~l~~c~~l  301 (387)
                      .+++.+++|++|+++++.-.+.++...  ..+..+    ++|++|++++| .++.++.   .+..+++|+.|++++| .+
T Consensus       328 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~~~~l----~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l  399 (549)
T 2z81_A          328 SFSQHLKSLEFLDLSENLMVEEYLKNS--ACKGAW----PSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TF  399 (549)
T ss_dssp             HHHHHCTTCCEEECCSSCCCHHHHHHH--TCTTSS----TTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CC
T ss_pred             HHHhcCccccEEEccCCccccccccch--hhhhcc----ccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CC
Confidence            544567778888887764433332210  012333    78888888875 4665542   3667888888888874 67


Q ss_pred             eecCCCC-cCCCceEEEeccCCCCCccccccccCCCCCcceEecccCcccccccCCCCCCCccEEeecCCcccccccccc
Q 043667          302 VSFPEVA-LPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGVQLPPSLKRLDIWNCDNIRTLTVEE  380 (387)
Q Consensus       302 ~~~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~  380 (387)
                      +.+|... ..++|++|++++|. ++.++..+  ..+  |++|++++| +++.++  ..+++|++|++++| +++.+|...
T Consensus       400 ~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~--~~~--L~~L~Ls~N-~l~~~~--~~l~~L~~L~Ls~N-~l~~ip~~~  470 (549)
T 2z81_A          400 HPMPDSCQWPEKMRFLNLSSTG-IRVVKTCI--PQT--LEVLDVSNN-NLDSFS--LFLPRLQELYISRN-KLKTLPDAS  470 (549)
T ss_dssp             CCCCSCCCCCTTCCEEECTTSC-CSCCCTTS--CTT--CSEEECCSS-CCSCCC--CCCTTCCEEECCSS-CCSSCCCGG
T ss_pred             ccCChhhcccccccEEECCCCC-cccccchh--cCC--ceEEECCCC-Chhhhc--ccCChhcEEECCCC-ccCcCCCcc
Confidence            7776532 23788888888854 77776543  244  888888886 677665  45789999999995 688999654


Q ss_pred             ccccCC
Q 043667          381 GVQSSS  386 (387)
Q Consensus       381 ~~~~~~  386 (387)
                      .++.|+
T Consensus       471 ~l~~L~  476 (549)
T 2z81_A          471 LFPVLL  476 (549)
T ss_dssp             GCTTCC
T ss_pred             cCccCC
Confidence            455543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.91  E-value=1.7e-22  Score=196.00  Aligned_cols=155  Identities=14%  Similarity=0.171  Sum_probs=94.5

Q ss_pred             CCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCC-
Q 043667          201 PQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVK-  279 (387)
Q Consensus       201 ~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~-  279 (387)
                      ..+++|++  +.++++.....+|.. ++.+++|++|+++++ .+..++.  .+..+..+    ++|++|+++++. ++. 
T Consensus       321 ~~l~~L~~--L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~l~~--~~~~~~~l----~~L~~L~Ls~N~-l~~~  389 (520)
T 2z7x_B          321 SKISPFLH--LDFSNNLLTDTVFEN-CGHLTELETLILQMN-QLKELSK--IAEMTTQM----KSLQQLDISQNS-VSYD  389 (520)
T ss_dssp             SSCCCCCE--EECCSSCCCTTTTTT-CCCCSSCCEEECCSS-CCCBHHH--HHHHHTTC----TTCCEEECCSSC-CBCC
T ss_pred             hhCCcccE--EEeECCccChhhhhh-hccCCCCCEEEccCC-ccCcccc--chHHHhhC----CCCCEEECCCCc-CCcc
Confidence            45566666  677665443334433 556777777777764 3333221  11134444    777777777754 444 


Q ss_pred             cccc-cCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCCCccccccccCCCCCcceEecccCcccccccCC--
Q 043667          280 LPQS-SLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGV--  356 (387)
Q Consensus       280 ~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--  356 (387)
                      +|.. +..+++|+.|++++| .++......++++|++|++++| .++.+|..+..+++  |++|++++| +++.++..  
T Consensus       390 l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~--L~~L~L~~N-~l~~l~~~~~  464 (520)
T 2z7x_B          390 EKKGDCSWTKSLLSLNMSSN-ILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEA--LQELNVASN-QLKSVPDGIF  464 (520)
T ss_dssp             GGGCSCCCCTTCCEEECCSS-CCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTT--CCEEECCSS-CCCCCCTTTT
T ss_pred             cccchhccCccCCEEECcCC-CCCcchhhhhcccCCEEECCCC-cccccchhhhcCCC--CCEEECCCC-cCCccCHHHh
Confidence            6653 556777788887774 3432222233367888888775 46777776666666  888888775 67777654  


Q ss_pred             CCCCCccEEeecCCc
Q 043667          357 QLPPSLKRLDIWNCD  371 (387)
Q Consensus       357 ~~~~~L~~L~l~~C~  371 (387)
                      ..+++|++|++++++
T Consensus       465 ~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          465 DRLTSLQKIWLHTNP  479 (520)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             ccCCcccEEECcCCC
Confidence            345777888877755

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.90  E-value=3e-22  Score=194.38  Aligned_cols=336  Identities=12%  Similarity=0.031  Sum_probs=196.3

Q ss_pred             CCCcEEEEcCcCCCCCC-CccCCccCCCccEEEeecCCCCCCCC--CcCCcCCCcEEEecCCCCceEeCccccCCCcccC
Q 043667            6 KNLEQFCISGYRGAKFP-TWFGDSSFSNLVTLKFEYCGMCPTLP--SVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIP   82 (387)
Q Consensus         6 ~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~l~~c~~~~~l~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~   82 (387)
                      ++|++|+++++.+..++ ..+..  +++|++|++++| .++.++  .++.+++|++|+++++ .++.++..        .
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--------~   88 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILS--LSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--------P   88 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTT--CTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--------C
T ss_pred             ccccEEECCCCcccccChhhccc--cccccEEecCCC-ccCCcChHHhhcccCCCEEecCCC-ceeecCcc--------c
Confidence            57778888877776664 45555  777888888775 555553  3777788888888877 56666542        3


Q ss_pred             CCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCCCCCc--cEEEeccCcc-----ccccc---
Q 043667           83 FPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPAL--EMLVIEACKE-----LSVSV---  152 (387)
Q Consensus        83 ~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~~~~L--~~L~l~~~~~-----l~~~~---  152 (387)
                      +++|++|+++++.-.....+    ..++.+++|++|+++++. +.+.....+++|  +.|++.++..     .+..+   
T Consensus        89 l~~L~~L~L~~N~l~~~~~p----~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l  163 (520)
T 2z7x_B           89 TVNLKHLDLSFNAFDALPIC----KEFGNMSQLKFLGLSTTH-LEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF  163 (520)
T ss_dssp             CCCCSEEECCSSCCSSCCCC----GGGGGCTTCCEEEEEESS-CCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTC
T ss_pred             cCCccEEeccCCccccccch----hhhccCCcceEEEecCcc-cchhhccccccceeeEEEeeccccccccccccccccc
Confidence            67788888876542111111    234457788888887753 332333346666  7777776543     01111   


Q ss_pred             -----------------------cCCCCcceEEEcCcc-------ceeEeccccc-------------------------
Q 043667          153 -----------------------SSLPALCKLKIGGCK-------KVVWRSATDH-------------------------  177 (387)
Q Consensus       153 -----------------------~~~~~L~~L~i~~~~-------~~~~~~~~~~-------------------------  177 (387)
                                             ..+++|+.++++++.       .......+..                         
T Consensus       164 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~  243 (520)
T 2z7x_B          164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL  243 (520)
T ss_dssp             CEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHH
T ss_pred             ccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHH
Confidence                                   123344444443321       0000001111                         


Q ss_pred             --CCCCcEEeccCCCCcccccCCC----CCCCccccceeEEEcCCCCcccccc-------------------------cc
Q 043667          178 --LGSQNSVVCRDTSNQVFLAGPL----KPQLPKLEELILSTKEQTYIWKSHD-------------------------GL  226 (387)
Q Consensus       178 --~~~L~~L~l~~~~~l~~~~~~~----~~~l~~L~~l~L~l~~~~~~~~~~~-------------------------~~  226 (387)
                        .++|++|+++++.-...++...    ...+++|+.  +.+..+..  .+|.                         ..
T Consensus       244 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~--l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~  319 (520)
T 2z7x_B          244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSI--HQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC  319 (520)
T ss_dssp             HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEE--EEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC
T ss_pred             hhhCcccEEEeecccccCccccchhhcccccCceeEe--ccccccce--ecchhhhhcccccCceeEEEcCCCccccccc
Confidence              2355555555543211222221    034444444  44433322  1220                         00


Q ss_pred             cccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCC---cccccCCCCCccEEEecCCCCcee
Q 043667          227 LQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVK---LPQSSLSLSSLREIDIYDCSSLVS  303 (387)
Q Consensus       227 l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~---~~~~~~~~~~L~~L~l~~c~~l~~  303 (387)
                      .+.+++|++|+++++.--+.++.     ++..+    ++|++|++++|. ++.   +|..+..+++|+.|+++++ .++.
T Consensus       320 ~~~l~~L~~L~Ls~n~l~~~~~~-----~~~~l----~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~  388 (520)
T 2z7x_B          320 PSKISPFLHLDFSNNLLTDTVFE-----NCGHL----TELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQN-SVSY  388 (520)
T ss_dssp             CSSCCCCCEEECCSSCCCTTTTT-----TCCCC----SSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSS-CCBC
T ss_pred             hhhCCcccEEEeECCccChhhhh-----hhccC----CCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCC-cCCc
Confidence            14677888888887543332332     34444    888888888754 553   4455778888999999884 5555


Q ss_pred             -cCCCCcC--CCceEEEeccCCCCCccccccccCCCCCcceEecccCcccccccCC-CCCCCccEEeecCCccccccccc
Q 043667          304 -FPEVALP--SKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGV-QLPPSLKRLDIWNCDNIRTLTVE  379 (387)
Q Consensus       304 -~~~~~~~--~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~C~~l~~l~~~  379 (387)
                       ++...+.  ++|++|++++|.--..++..+.  ++  |++|++++| +++.+|.. ..+++|++|++++| +++.+|.+
T Consensus       389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~--L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~  462 (520)
T 2z7x_B          389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PR--IKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDG  462 (520)
T ss_dssp             CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TT--CCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTT
T ss_pred             ccccchhccCccCCEEECcCCCCCcchhhhhc--cc--CCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHH
Confidence             6654332  7899999988764345555431  45  999999996 78888875 56789999999995 68899865

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.90  E-value=2.5e-22  Score=191.63  Aligned_cols=340  Identities=14%  Similarity=0.100  Sum_probs=205.3

Q ss_pred             CCCCcEEEEcCcCCCCC-CCccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCccc
Q 043667            5 HKNLEQFCISGYRGAKF-PTWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAI   81 (387)
Q Consensus         5 ~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~   81 (387)
                      +++|++|+++++.+..+ |..++.  +++|++|++++|.....++.  ++.+++|++|+++++ .+..+....     +.
T Consensus        29 ~~~l~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-----~~  100 (455)
T 3v47_A           29 PAHVNYVDLSLNSIAELNETSFSR--LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGA-----FN  100 (455)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTSS--CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTT-----TT
T ss_pred             CCccCEEEecCCccCcCChhHhcc--CccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhh-----cc
Confidence            36788888888877765 666665  88888888888644345543  777888888888888 455553332     34


Q ss_pred             CCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCC----CCCCccEEEeccCcccc---ccccC
Q 043667           82 PFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPE----HLPALEMLVIEACKELS---VSVSS  154 (387)
Q Consensus        82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~----~~~~L~~L~l~~~~~l~---~~~~~  154 (387)
                      .+++|++|++.++.-......   ...+..+++|++|+++++. +.+..|.    .+++|+.|+++++....   ..+..
T Consensus       101 ~l~~L~~L~L~~n~l~~~~~~---~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  176 (455)
T 3v47_A          101 GLANLEVLTLTQCNLDGAVLS---GNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN  176 (455)
T ss_dssp             TCTTCCEEECTTSCCBTHHHH---SSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGG
T ss_pred             CcccCCEEeCCCCCCCccccC---cccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhhc
Confidence            578888888887542211110   0224457788888887763 3323332    36788888887765221   22222


Q ss_pred             C--CCcceEEEcCccceeEec---------ccccCCCCcEEeccCCCCcccccCCC--CCCCccccceeEEEcCCCCccc
Q 043667          155 L--PALCKLKIGGCKKVVWRS---------ATDHLGSQNSVVCRDTSNQVFLAGPL--KPQLPKLEELILSTKEQTYIWK  221 (387)
Q Consensus       155 ~--~~L~~L~i~~~~~~~~~~---------~~~~~~~L~~L~l~~~~~l~~~~~~~--~~~l~~L~~l~L~l~~~~~~~~  221 (387)
                      +  ++|+.+++.++.......         .+..+++|++|+++++.-....+...  ....++|+.  +.+..+.....
T Consensus       177 l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~--L~l~~~~~~~~  254 (455)
T 3v47_A          177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS--LILSNSYNMGS  254 (455)
T ss_dssp             GTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEE--EECTTCTTTSC
T ss_pred             cccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceee--Eeecccccccc
Confidence            2  566677766654333111         11234667777777664322111110  011244555  66655432221


Q ss_pred             ---------ccccccc--cCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCc-ccccCCCCC
Q 043667          222 ---------SHDGLLQ--DICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKL-PQSSLSLSS  289 (387)
Q Consensus       222 ---------~~~~~l~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~-~~~~~~~~~  289 (387)
                               .....+.  ..++|++|+++++. +..+.+.    .+..+    ++|++|+++++. ++.+ +..+..+++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~----~~~~l----~~L~~L~Ls~n~-l~~~~~~~~~~l~~  324 (455)
T 3v47_A          255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLKS----VFSHF----TDLEQLTLAQNE-INKIDDNAFWGLTH  324 (455)
T ss_dssp             CTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC-CCEECTT----TTTTC----TTCCEEECTTSC-CCEECTTTTTTCTT
T ss_pred             ccchhhhccCcccccccccccCceEEEecCcc-ccccchh----hcccC----CCCCEEECCCCc-ccccChhHhcCccc
Confidence                     0000011  23678888888854 3333322    35555    888999988864 5554 446778888


Q ss_pred             ccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCcc-ccccccCCCCCcceEecccCcccccccCC--CCCCCccE
Q 043667          290 LREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSL-PEAWMCDTNSSLETLKIERCRSLTYIAGV--QLPPSLKR  364 (387)
Q Consensus       290 L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l-~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~  364 (387)
                      |+.|+++++ .++.++...+.  ++|++|++++|. ++.+ +..+..+++  |++|+++++ +++.++..  ..+++|++
T Consensus       325 L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~--L~~L~L~~N-~l~~~~~~~~~~l~~L~~  399 (455)
T 3v47_A          325 LLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPN--LKELALDTN-QLKSVPDGIFDRLTSLQK  399 (455)
T ss_dssp             CCEEECCSS-CCCEECGGGGTTCTTCCEEECCSSC-CCEECTTTTTTCTT--CCEEECCSS-CCSCCCTTTTTTCTTCCE
T ss_pred             CCEEECCCC-ccCCcChhHhcCcccCCEEECCCCc-ccccChhhcccccc--ccEEECCCC-ccccCCHhHhccCCcccE
Confidence            999999884 66766544433  789999998864 5655 556666667  999999884 78777765  45688899


Q ss_pred             EeecCCccc
Q 043667          365 LDIWNCDNI  373 (387)
Q Consensus       365 L~l~~C~~l  373 (387)
                      |++++++--
T Consensus       400 L~l~~N~l~  408 (455)
T 3v47_A          400 IWLHTNPWD  408 (455)
T ss_dssp             EECCSSCBC
T ss_pred             EEccCCCcc
Confidence            998875543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.90  E-value=5.9e-22  Score=194.37  Aligned_cols=110  Identities=20%  Similarity=0.227  Sum_probs=75.0

Q ss_pred             CCccEEEeccCCCCCCcc--cccCCCCCccEEEecCCCCceecCCCCc--CCCceEEEeccCCCC-CccccccccCCCCC
Q 043667          264 CRLEYLRLRYCKGLVKLP--QSSLSLSSLREIDIYDCSSLVSFPEVAL--PSKLKKIEIRKCDAL-KSLPEAWMCDTNSS  338 (387)
Q Consensus       264 ~~L~~L~l~~c~~l~~~~--~~~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~~l-~~l~~~~~~~~~~~  338 (387)
                      ++|++|++++|. ++..+  ..+..+++|+.|++++| .+.......+  .++|++|++++|... ..+|..+..+++  
T Consensus       396 ~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~--  471 (570)
T 2z63_A          396 EQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN--  471 (570)
T ss_dssp             TTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT--
T ss_pred             CCCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCC-cccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC--
Confidence            667777776644 33332  24667788888888875 4454433333  278899999887632 257777766777  


Q ss_pred             cceEecccCcccccccCC--CCCCCccEEeecCCccccccccc
Q 043667          339 LETLKIERCRSLTYIAGV--QLPPSLKRLDIWNCDNIRTLTVE  379 (387)
Q Consensus       339 L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~C~~l~~l~~~  379 (387)
                      |++|++++| +++.+...  ..+++|++|++++| +++.+|.+
T Consensus       472 L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~  512 (570)
T 2z63_A          472 LTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDG  512 (570)
T ss_dssp             CCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred             CCEEECCCC-ccccCChhhhhcccCCCEEeCCCC-cCCCCCHH
Confidence            999999996 67766433  56789999999986 57887754

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.89  E-value=1.1e-21  Score=183.48  Aligned_cols=296  Identities=16%  Similarity=0.150  Sum_probs=183.5

Q ss_pred             CCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCC
Q 043667           30 FSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQ  107 (387)
Q Consensus        30 l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  107 (387)
                      +++++.|+++++ .++.+|.  ++.+++|++|++.++ .+..++...     +..+++|++|++.++. +.....    .
T Consensus        44 l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~-----~~~l~~L~~L~L~~n~-l~~~~~----~  111 (390)
T 3o6n_A           44 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYA-----FAYAHTIQKLYMGFNA-IRYLPP----H  111 (390)
T ss_dssp             GCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTS-CCCEECTTT-----TTTCTTCCEEECCSSC-CCCCCT----T
T ss_pred             cCCceEEEecCC-chhhCChhHhcccccCcEEECCCC-cccccChhh-----ccCCCCcCEEECCCCC-CCcCCH----H
Confidence            567777777664 5666665  566777777777776 455554432     2346777777777643 333332    3


Q ss_pred             CccCCCCcceEeeccCcccccccCC----CCCCccEEEeccCcccc---ccccCCCCcceEEEcCccceeEecccccCCC
Q 043667          108 GVEGFPKLRELHILRCSKLQGTFPE----HLPALEMLVIEACKELS---VSVSSLPALCKLKIGGCKKVVWRSATDHLGS  180 (387)
Q Consensus       108 ~i~~~~~L~~L~l~~~~~l~~~~~~----~~~~L~~L~l~~~~~l~---~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~  180 (387)
                      .+..+++|++|+++++ .+. .+|.    .+++|+.|+++++....   ..+..+++|++|+++++.....  .+..+++
T Consensus       112 ~~~~l~~L~~L~L~~n-~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~  187 (390)
T 3o6n_A          112 VFQNVPLLTVLVLERN-DLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPS  187 (390)
T ss_dssp             TTTTCTTCCEEECCSS-CCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTT
T ss_pred             HhcCCCCCCEEECCCC-ccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccc
Confidence            3445677777777765 333 3332    35677777777664221   3466677777777776643332  2345677


Q ss_pred             CcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhh
Q 043667          181 QNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLC  260 (387)
Q Consensus       181 L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~  260 (387)
                      |+.++++++. +..++     ..+.|++  +.++++. +..++..   .+++|++|+++++ .+...+      .+..+ 
T Consensus       188 L~~L~l~~n~-l~~~~-----~~~~L~~--L~l~~n~-l~~~~~~---~~~~L~~L~l~~n-~l~~~~------~l~~l-  247 (390)
T 3o6n_A          188 LFHANVSYNL-LSTLA-----IPIAVEE--LDASHNS-INVVRGP---VNVELTILKLQHN-NLTDTA------WLLNY-  247 (390)
T ss_dssp             CSEEECCSSC-CSEEE-----CCSSCSE--EECCSSC-CCEEECC---CCSSCCEEECCSS-CCCCCG------GGGGC-
T ss_pred             cceeeccccc-ccccC-----CCCcceE--EECCCCe-eeecccc---ccccccEEECCCC-CCcccH------HHcCC-
Confidence            7777777642 22221     1234555  7766643 3444433   3567888888875 344332      34444 


Q ss_pred             hccCCccEEEeccCCCCCCc-ccccCCCCCccEEEecCCCCceecCCCCc-CCCceEEEeccCCCCCccccccccCCCCC
Q 043667          261 ELSCRLEYLRLRYCKGLVKL-PQSSLSLSSLREIDIYDCSSLVSFPEVAL-PSKLKKIEIRKCDALKSLPEAWMCDTNSS  338 (387)
Q Consensus       261 ~~~~~L~~L~l~~c~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~-~~~L~~L~l~~c~~l~~l~~~~~~~~~~~  338 (387)
                         ++|++|+++++. ++.+ +..+..+++|+.|++++ +.++.++.... .++|++|++++| .++.+|..+..+++  
T Consensus       248 ---~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~--  319 (390)
T 3o6n_A          248 ---PGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDR--  319 (390)
T ss_dssp             ---TTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCS-SCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTT--
T ss_pred             ---CCccEEECCCCc-CCCcChhHccccccCCEEECCC-CcCcccCcccCCCCCCCEEECCCC-cceecCccccccCc--
Confidence               888888888764 5544 55677888888888887 46777665433 278888888876 47777766666666  


Q ss_pred             cceEecccCcccccccCCCCCCCccEEeecCCc
Q 043667          339 LETLKIERCRSLTYIAGVQLPPSLKRLDIWNCD  371 (387)
Q Consensus       339 L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~C~  371 (387)
                      |++|+++++ .++.++. ..+++|++|++++++
T Consensus       320 L~~L~L~~N-~i~~~~~-~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          320 LENLYLDHN-SIVTLKL-STHHTLKNLTLSHND  350 (390)
T ss_dssp             CSEEECCSS-CCCCCCC-CTTCCCSEEECCSSC
T ss_pred             CCEEECCCC-ccceeCc-hhhccCCEEEcCCCC
Confidence            888888885 5776653 456788888888744

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.89  E-value=1.3e-21  Score=195.89  Aligned_cols=125  Identities=18%  Similarity=0.190  Sum_probs=67.9

Q ss_pred             CCCcEEEEcCcCCCCCCC-ccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccC
Q 043667            6 KNLEQFCISGYRGAKFPT-WFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIP   82 (387)
Q Consensus         6 ~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~   82 (387)
                      +++++|+++++....+|. .++.  +++|++|+++++ .++.+++  ++++++|++|+++++ .+..++...     +..
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~-----~~~   95 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTR--YSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKT-----FAF   95 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGG--GTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTT-----TTT
T ss_pred             CCCcEEECCCCCCCCcCHHHHhC--CCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCC-ccCccChhh-----hcc
Confidence            567777777777666654 3444  677777777665 4444432  556677777777666 455554432     234


Q ss_pred             CCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCC---CCCCccEEEeccC
Q 043667           83 FPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPE---HLPALEMLVIEAC  145 (387)
Q Consensus        83 ~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~---~~~~L~~L~l~~~  145 (387)
                      +++|++|+++++. +.....    ..+..+++|++|+++++ .+.+..|.   .+++|+.|+++++
T Consensus        96 l~~L~~L~L~~n~-l~~~~~----~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n  155 (680)
T 1ziw_A           96 CTNLTELHLMSNS-IQKIKN----NPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNN  155 (680)
T ss_dssp             CTTCSEEECCSSC-CCCCCS----CTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSS
T ss_pred             CCCCCEEECCCCc-cCccCh----hHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCC
Confidence            5666666666542 222222    23334566666666554 22222222   2455555555554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.89  E-value=2.3e-21  Score=198.51  Aligned_cols=102  Identities=16%  Similarity=-0.007  Sum_probs=51.8

Q ss_pred             CccEEEeccCccc---cccccCCCCcceEEEcCccceeE-ecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeE
Q 043667          136 ALEMLVIEACKEL---SVSVSSLPALCKLKIGGCKKVVW-RSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELIL  211 (387)
Q Consensus       136 ~L~~L~l~~~~~l---~~~~~~~~~L~~L~i~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L  211 (387)
                      +|+.|+++++...   ...+..+++|+.|+++++..... +..+..+++|++|+++++.- ..+.......+++|+.  +
T Consensus       267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~--L  343 (844)
T 3j0a_A          267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL-GELYSSNFYGLPKVAY--I  343 (844)
T ss_dssp             CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCC-SCCCSCSCSSCTTCCE--E
T ss_pred             CccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCC-CccCHHHhcCCCCCCE--E
Confidence            4555555544311   13345556666666665544332 23445556666666665532 2222222445556666  6


Q ss_pred             EEcCCCCcccccccccccCCCccEEEecCC
Q 043667          212 STKEQTYIWKSHDGLLQDICSLKKLTIDWC  241 (387)
Q Consensus       212 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  241 (387)
                      .++++ .+..++...++.+++|++|+++++
T Consensus       344 ~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N  372 (844)
T 3j0a_A          344 DLQKN-HIAIIQDQTFKFLEKLQTLDLRDN  372 (844)
T ss_dssp             ECCSC-CCCCCCSSCSCSCCCCCEEEEETC
T ss_pred             ECCCC-CCCccChhhhcCCCCCCEEECCCC
Confidence            66554 344444444555666666666654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.89  E-value=8.9e-22  Score=193.11  Aligned_cols=347  Identities=15%  Similarity=0.135  Sum_probs=198.3

Q ss_pred             CCCCCCCcEEEEcCcCCCCCC-CccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceE--eCccccC
Q 043667            2 LEPHKNLEQFCISGYRGAKFP-TWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKR--LGSEFYG   76 (387)
Q Consensus         2 ~~~~~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~--~~~~~~~   76 (387)
                      |..+++|++|+++++....+| ..++.  +++|++|+++++ .++.++.  ++.+++|++|+++++ .+..  ++..   
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~---  144 (570)
T 2z63_A           72 YQSLSHLSTLILTGNPIQSLALGAFSG--LSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY---  144 (570)
T ss_dssp             TTTCTTCCEEECTTCCCCEECTTTTTT--CTTCCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGG---
T ss_pred             ccCchhCCEEeCcCCcCCccCHhhhcC--cccccccccccc-ccccCCCccccccccccEEecCCC-ccceecChhh---
Confidence            556778888888888776664 55665  788888888775 5666664  777888888888777 4443  2322   


Q ss_pred             CCcccCCCCcceeeccccCCcccccc--------C--------cCCCCc-------cCCCCcceEeeccC----------
Q 043667           77 KGAAIPFPRLETLRFDAMLGWEDWIP--------L--------RSGQGV-------EGFPKLRELHILRC----------  123 (387)
Q Consensus        77 ~~~~~~~~~L~~L~l~~~~~l~~~~~--------~--------~~~~~i-------~~~~~L~~L~l~~~----------  123 (387)
                         +..+++|++|++.++.- .....        .        .....+       ....+|+.|+++++          
T Consensus       145 ---~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  220 (570)
T 2z63_A          145 ---FSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC  220 (570)
T ss_dssp             ---GGGCTTCCEEECTTSCC-CEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHH
T ss_pred             ---hcccCCCCEEeCcCCcc-ceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhh
Confidence               24567777777665421 11000        0        000000       00112333333321          


Q ss_pred             -----------------------------------------------cccccccCC---CCCCccEEEeccCc--ccccc
Q 043667          124 -----------------------------------------------SKLQGTFPE---HLPALEMLVIEACK--ELSVS  151 (387)
Q Consensus       124 -----------------------------------------------~~l~~~~~~---~~~~L~~L~l~~~~--~l~~~  151 (387)
                                                                     ..+.+..+.   .+++|+.|++.++.  .++..
T Consensus       221 ~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~  300 (570)
T 2z63_A          221 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF  300 (570)
T ss_dssp             HHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBC
T ss_pred             hcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhh
Confidence                                                           011111121   24566666665543  22233


Q ss_pred             ccCCCCcceEEEcCccceeEec--------------------ccccCCCCcEEeccCCCCccccc-CCCCCCCcccccee
Q 043667          152 VSSLPALCKLKIGGCKKVVWRS--------------------ATDHLGSQNSVVCRDTSNQVFLA-GPLKPQLPKLEELI  210 (387)
Q Consensus       152 ~~~~~~L~~L~i~~~~~~~~~~--------------------~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~l~~L~~l~  210 (387)
                      +..+ +|++|++.++....++.                    ....+++|++|+++++.-..... ......+++|++  
T Consensus       301 ~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~--  377 (570)
T 2z63_A          301 SYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY--  377 (570)
T ss_dssp             CSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCE--
T ss_pred             hccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCE--
Confidence            3333 55555555443222221                    01344555555555543211100 000224455555  


Q ss_pred             EEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCc
Q 043667          211 LSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSL  290 (387)
Q Consensus       211 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L  290 (387)
                      +.++++. +..++.. +..+++|++|+++++. +...++..   .+..+    ++|++|++++|......+..+..+++|
T Consensus       378 L~l~~n~-l~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~---~~~~l----~~L~~L~l~~n~l~~~~~~~~~~l~~L  447 (570)
T 2z63_A          378 LDLSFNG-VITMSSN-FLGLEQLEHLDFQHSN-LKQMSEFS---VFLSL----RNLIYLDISHTHTRVAFNGIFNGLSSL  447 (570)
T ss_dssp             EECCSCS-EEEEEEE-EETCTTCCEEECTTSE-EESCTTSC---TTTTC----TTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred             EECCCCc-ccccccc-ccccCCCCEEEccCCc-cccccchh---hhhcC----CCCCEEeCcCCcccccchhhhhcCCcC
Confidence            6666553 3334444 5667888888888753 33322210   24444    899999999986444556678899999


Q ss_pred             cEEEecCCCCce--ecCCC-CcCCCceEEEeccCCCCCcc-ccccccCCCCCcceEecccCcccccccCC--CCCCCccE
Q 043667          291 REIDIYDCSSLV--SFPEV-ALPSKLKKIEIRKCDALKSL-PEAWMCDTNSSLETLKIERCRSLTYIAGV--QLPPSLKR  364 (387)
Q Consensus       291 ~~L~l~~c~~l~--~~~~~-~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~  364 (387)
                      +.|++++| .++  .++.. ...++|++|++++|. ++.+ |..+..+++  |++|++++| +++.++..  ..+++|++
T Consensus       448 ~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~--L~~L~l~~n-~l~~~~~~~~~~l~~L~~  522 (570)
T 2z63_A          448 EVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSS--LQVLNMASN-QLKSVPDGIFDRLTSLQK  522 (570)
T ss_dssp             CEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTT--CCEEECCSS-CCSCCCTTTTTTCTTCCE
T ss_pred             cEEECcCC-cCccccchhhhhcccCCCEEECCCCc-cccCChhhhhcccC--CCEEeCCCC-cCCCCCHHHhhcccCCcE
Confidence            99999996 443  45532 223899999999975 6665 667777777  999999996 78887765  56789999


Q ss_pred             EeecCCccccccc
Q 043667          365 LDIWNCDNIRTLT  377 (387)
Q Consensus       365 L~l~~C~~l~~l~  377 (387)
                      |++++++---..|
T Consensus       523 L~l~~N~~~~~~~  535 (570)
T 2z63_A          523 IWLHTNPWDCSCP  535 (570)
T ss_dssp             EECCSSCBCCCTT
T ss_pred             EEecCCcccCCCc
Confidence            9999866443343

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.89  E-value=4.8e-21  Score=196.11  Aligned_cols=342  Identities=14%  Similarity=0.123  Sum_probs=207.8

Q ss_pred             CCCCcEEEEcCcCCCCC-CCccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCccc
Q 043667            5 HKNLEQFCISGYRGAKF-PTWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAI   81 (387)
Q Consensus         5 ~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~   81 (387)
                      +++|++|+++++.+..+ |..+..  +++|++|++++|.....+++  ++++++|++|+++++ .+..+....     +.
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~~~~--l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~-----~~   94 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASSFPF--LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDA-----FQ   94 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSSCSS--CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTTS-----SC
T ss_pred             CCCcCEEECCCCcCCccChhHCcc--cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHhH-----cc
Confidence            57899999999988776 667776  99999999999867777743  899999999999999 666664443     35


Q ss_pred             CCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccC----CCCCCccEEEeccCccc---cccccC
Q 043667           82 PFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFP----EHLPALEMLVIEACKEL---SVSVSS  154 (387)
Q Consensus        82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~----~~~~~L~~L~l~~~~~l---~~~~~~  154 (387)
                      .+++|++|+++++. +.+...  ....+..+++|++|+++++.. .+..+    ..+++|+.|+++++..-   ...+..
T Consensus        95 ~l~~L~~L~Ls~n~-l~~~~~--~~~~~~~L~~L~~L~Ls~N~l-~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~  170 (844)
T 3j0a_A           95 GLFHLFELRLYFCG-LSDAVL--KDGYFRNLKALTRLDLSKNQI-RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP  170 (844)
T ss_dssp             SCSSCCCEECTTCC-CSSCCS--TTCCCSSCSSCCEEEEESCCC-CCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred             CCcccCEeeCcCCC-CCcccc--cCccccccCCCCEEECCCCcc-cccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence            68999999999864 322111  001245689999999998743 32222    34789999999886522   123333


Q ss_pred             C--CCcceEEEcCcccee-EecccccCC------CCcEEeccCCCCcccccCC---------------------------
Q 043667          155 L--PALCKLKIGGCKKVV-WRSATDHLG------SQNSVVCRDTSNQVFLAGP---------------------------  198 (387)
Q Consensus       155 ~--~~L~~L~i~~~~~~~-~~~~~~~~~------~L~~L~l~~~~~l~~~~~~---------------------------  198 (387)
                      +  ++|+.|+++++.... .+.....++      .|+.|+++++.-....+..                           
T Consensus       171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~  250 (844)
T 3j0a_A          171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH  250 (844)
T ss_dssp             HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred             ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccc
Confidence            3  678888887664333 112222222      3777777765211100000                           


Q ss_pred             --------CCC--CCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccE
Q 043667          199 --------LKP--QLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEY  268 (387)
Q Consensus       199 --------~~~--~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~  268 (387)
                              ...  ..++|++  +.++++. +..++...++.+++|+.|+++++ .+..+++.    .+..+    ++|++
T Consensus       251 ~l~~~~~~~f~~l~~~~L~~--L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~----~~~~l----~~L~~  318 (844)
T 3j0a_A          251 NIKDPDQNTFAGLARSSVRH--LDLSHGF-VFSLNSRVFETLKDLKVLNLAYN-KINKIADE----AFYGL----DNLQV  318 (844)
T ss_dssp             SSTTGGGTTTTTTTTSCCCE--EECTTCC-CCEECSCCSSSCCCCCEEEEESC-CCCEECTT----TTTTC----SSCCE
T ss_pred             ccCCCChhhhhccccCCccE--EECCCCc-ccccChhhhhcCCCCCEEECCCC-cCCCCChH----HhcCC----CCCCE
Confidence                    001  1245666  6666654 33334444666777888888774 44444332    34444    77777


Q ss_pred             EEeccCCCCCCc-ccccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCccccccccCCC---------
Q 043667          269 LRLRYCKGLVKL-PQSSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPEAWMCDTN---------  336 (387)
Q Consensus       269 L~l~~c~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~~~~~~~~---------  336 (387)
                      |+++++. ++.+ +..+..+++|+.|+++++ .+..++...+.  ++|++|+++++. ++.++.    .++         
T Consensus       319 L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~----~~~L~~L~l~~N  391 (844)
T 3j0a_A          319 LNLSYNL-LGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNA-LTTIHF----IPSIPDIFLSGN  391 (844)
T ss_dssp             EEEESCC-CSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCC-SCCCSS----CCSCSEEEEESC
T ss_pred             EECCCCC-CCccCHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCC-CCcccC----CCCcchhccCCC
Confidence            7777754 4444 445667777777777773 56666554333  677777777643 444432    222         


Q ss_pred             ---------CCcceEecccCcccccccCC---CCCCCccEEeecCCccccccccc
Q 043667          337 ---------SSLETLKIERCRSLTYIAGV---QLPPSLKRLDIWNCDNIRTLTVE  379 (387)
Q Consensus       337 ---------~~L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~C~~l~~l~~~  379 (387)
                               ..++.++++++ .++.++..   ..+++|++|+++++ +++.++..
T Consensus       392 ~l~~l~~~~~~l~~L~ls~N-~l~~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~  444 (844)
T 3j0a_A          392 KLVTLPKINLTANLIHLSEN-RLENLDILYFLLRVPHLQILILNQN-RFSSCSGD  444 (844)
T ss_dssp             CCCCCCCCCTTCCEEECCSC-CCCSSTTHHHHTTCTTCCEEEEESC-CCCCCCSS
T ss_pred             CcccccccccccceeecccC-ccccCchhhhhhcCCccceeeCCCC-cccccccc
Confidence                     11444444442 34333221   24678888888884 46665543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.89  E-value=8e-22  Score=181.36  Aligned_cols=297  Identities=12%  Similarity=0.159  Sum_probs=225.9

Q ss_pred             CCCCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCC
Q 043667            4 PHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPF   83 (387)
Q Consensus         4 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~   83 (387)
                      .+++|++|+++++....+|. +..  +++|++|++++| .++.++.++.+++|++|++.++ .++.++.       +..+
T Consensus        42 ~l~~L~~L~l~~~~i~~~~~-~~~--~~~L~~L~l~~n-~i~~~~~~~~l~~L~~L~L~~n-~i~~~~~-------~~~l  109 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASIQG-IEY--LTNLEYLNLNGN-QITDISPLSNLVKLTNLYIGTN-KITDISA-------LQNL  109 (347)
T ss_dssp             HHTTCSEEECCSSCCCCCTT-GGG--CTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCGG-------GTTC
T ss_pred             hcccccEEEEeCCccccchh-hhh--cCCccEEEccCC-ccccchhhhcCCcCCEEEccCC-cccCchH-------HcCC
Confidence            45789999999999888875 554  999999999997 7888888999999999999999 6666542       4578


Q ss_pred             CCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccC--CCCCCccEEEeccCcccc-ccccCCCCcce
Q 043667           84 PRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFP--EHLPALEMLVIEACKELS-VSVSSLPALCK  160 (387)
Q Consensus        84 ~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~--~~~~~L~~L~l~~~~~l~-~~~~~~~~L~~  160 (387)
                      ++|++|++.++. +...      ..+..+++|+.|+++++.... .++  ..+++|+.|+++++.... ..+..+++|++
T Consensus       110 ~~L~~L~l~~n~-i~~~------~~~~~l~~L~~L~l~~n~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~  181 (347)
T 4fmz_A          110 TNLRELYLNEDN-ISDI------SPLANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYS  181 (347)
T ss_dssp             TTCSEEECTTSC-CCCC------GGGTTCTTCCEEECTTCTTCC-CCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSE
T ss_pred             CcCCEEECcCCc-ccCc------hhhccCCceeEEECCCCCCcc-cccchhhCCCCcEEEecCCCcCCchhhccCCCCCE
Confidence            999999999754 3332      224468999999999886554 232  357899999999987433 34788999999


Q ss_pred             EEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecC
Q 043667          161 LKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDW  240 (387)
Q Consensus       161 L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  240 (387)
                      |+++++....+.. +..+++|+.++++++.-. ....  ...+++|++  +.++++. ++.++.  +..+++|++|++++
T Consensus       182 L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~~--~~~~~~L~~--L~l~~n~-l~~~~~--~~~l~~L~~L~l~~  252 (347)
T 4fmz_A          182 LSLNYNQIEDISP-LASLTSLHYFTAYVNQIT-DITP--VANMTRLNS--LKIGNNK-ITDLSP--LANLSQLTWLEIGT  252 (347)
T ss_dssp             EECTTSCCCCCGG-GGGCTTCCEEECCSSCCC-CCGG--GGGCTTCCE--EECCSSC-CCCCGG--GTTCTTCCEEECCS
T ss_pred             EEccCCccccccc-ccCCCccceeecccCCCC-CCch--hhcCCcCCE--EEccCCc-cCCCcc--hhcCCCCCEEECCC
Confidence            9999886554443 677899999999986432 2222  346778888  9998875 444443  66899999999999


Q ss_pred             CCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCc--CCCceEEEe
Q 043667          241 CPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVAL--PSKLKKIEI  318 (387)
Q Consensus       241 ~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l  318 (387)
                      + .+..++      .+..+    ++|++|++++| .++.++ .+..+++|+.|++++| .++......+  .++|++|++
T Consensus       253 n-~l~~~~------~~~~l----~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L  318 (347)
T 4fmz_A          253 N-QISDIN------AVKDL----TKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFL  318 (347)
T ss_dssp             S-CCCCCG------GGTTC----TTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEEC
T ss_pred             C-ccCCCh------hHhcC----CCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEc
Confidence            6 455542      24544    99999999987 577775 4778999999999996 5555443322  289999999


Q ss_pred             ccCCCCCccccccccCCCCCcceEecccC
Q 043667          319 RKCDALKSLPEAWMCDTNSSLETLKIERC  347 (387)
Q Consensus       319 ~~c~~l~~l~~~~~~~~~~~L~~L~l~~c  347 (387)
                      ++|+ ++.++. +..++.  |++|++++|
T Consensus       319 ~~n~-l~~~~~-~~~l~~--L~~L~l~~N  343 (347)
T 4fmz_A          319 SQNH-ITDIRP-LASLSK--MDSADFANQ  343 (347)
T ss_dssp             CSSS-CCCCGG-GGGCTT--CSEESSSCC
T ss_pred             cCCc-cccccC-hhhhhc--cceeehhhh
Confidence            9976 777655 556777  999999996

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.89  E-value=3.7e-21  Score=184.65  Aligned_cols=304  Identities=19%  Similarity=0.173  Sum_probs=214.5

Q ss_pred             cEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCC--CcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCc
Q 043667            9 EQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLP--SVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRL   86 (387)
Q Consensus         9 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L   86 (387)
                      +.++.++.....+|..+    .++++.|+++++ .++.++  .++.+++|++|++.++ .+..+....     +..+++|
T Consensus        14 ~~v~c~~~~l~~ip~~~----~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~-----~~~l~~L   82 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEGI----PTETRLLDLGKN-RIKTLNQDEFASFPHLEELELNEN-IVSAVEPGA-----FNNLFNL   82 (477)
T ss_dssp             TEEECCSCCCSSCCSCC----CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTS-CCCEECTTT-----TTTCTTC
T ss_pred             CEEEeCCCCcCcCCCCC----CCCCcEEECCCC-ccceECHhHccCCCCCCEEECCCC-ccCEeChhh-----hhCCccC
Confidence            56666777777888754    358999999986 677775  3889999999999998 676665443     3468999


Q ss_pred             ceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccC---CCCCCccEEEeccCccc---cccccCCCCcce
Q 043667           87 ETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFP---EHLPALEMLVIEACKEL---SVSVSSLPALCK  160 (387)
Q Consensus        87 ~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~---~~~~~L~~L~l~~~~~l---~~~~~~~~~L~~  160 (387)
                      ++|++.++. +.....    ..+..+++|++|+++++. +....+   ..+++|+.|+++++...   ...+..+++|++
T Consensus        83 ~~L~L~~n~-l~~~~~----~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  156 (477)
T 2id5_A           83 RTLGLRSNR-LKLIPL----GVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ  156 (477)
T ss_dssp             CEEECCSSC-CCSCCT----TSSTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCE
T ss_pred             CEEECCCCc-CCccCc----ccccCCCCCCEEECCCCc-cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCE
Confidence            999998743 444433    334568999999998873 332333   34688999999887532   246778899999


Q ss_pred             EEEcCccceeEe-cccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEec
Q 043667          161 LKIGGCKKVVWR-SATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTID  239 (387)
Q Consensus       161 L~i~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  239 (387)
                      |+++++....++ ..+..+++|+.|++.++.- ..++......+++|++  +.+.++..+..++...+ ...+|++|+++
T Consensus       157 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~--L~l~~~~~~~~~~~~~~-~~~~L~~L~l~  232 (477)
T 2id5_A          157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI-NAIRDYSFKRLYRLKV--LEISHWPYLDTMTPNCL-YGLNLTSLSIT  232 (477)
T ss_dssp             EEEESCCCSSCCHHHHTTCTTCCEEEEESCCC-CEECTTCSCSCTTCCE--EEEECCTTCCEECTTTT-TTCCCSEEEEE
T ss_pred             EECCCCcCcccChhHhcccCCCcEEeCCCCcC-cEeChhhcccCcccce--eeCCCCccccccCcccc-cCccccEEECc
Confidence            999887554433 3456788999999987643 3344333567778888  88888877777766533 34588888888


Q ss_pred             CCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCccc-ccCCCCCccEEEecCCCCceecCCCCcC--CCceEE
Q 043667          240 WCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQ-SSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKI  316 (387)
Q Consensus       240 ~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L  316 (387)
                      ++ .+..++..    .+..+    ++|++|+++++. ++.++. .+..+++|+.|++++ +.++.+....+.  ++|++|
T Consensus       233 ~n-~l~~~~~~----~~~~l----~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L  301 (477)
T 2id5_A          233 HC-NLTAVPYL----AVRHL----VYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVG-GQLAVVEPYAFRGLNYLRVL  301 (477)
T ss_dssp             SS-CCCSCCHH----HHTTC----TTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCS-SCCSEECTTTBTTCTTCCEE
T ss_pred             CC-cccccCHH----HhcCc----cccCeeECCCCc-CCccChhhccccccCCEEECCC-CccceECHHHhcCcccCCEE
Confidence            85 55565543    35555    888888888754 555553 467888888898887 467766554444  788888


Q ss_pred             EeccCCCCCcccc-ccccCCCCCcceEecccC
Q 043667          317 EIRKCDALKSLPE-AWMCDTNSSLETLKIERC  347 (387)
Q Consensus       317 ~l~~c~~l~~l~~-~~~~~~~~~L~~L~l~~c  347 (387)
                      +++++ .++.++. .+..+.+  |++|+++++
T Consensus       302 ~L~~N-~l~~~~~~~~~~l~~--L~~L~l~~N  330 (477)
T 2id5_A          302 NVSGN-QLTTLEESVFHSVGN--LETLILDSN  330 (477)
T ss_dssp             ECCSS-CCSCCCGGGBSCGGG--CCEEECCSS
T ss_pred             ECCCC-cCceeCHhHcCCCcc--cCEEEccCC
Confidence            88885 4777764 3444566  888888875

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.89  E-value=6.1e-21  Score=186.86  Aligned_cols=122  Identities=13%  Similarity=0.083  Sum_probs=56.6

Q ss_pred             CCCcEEEEcCcCCCCCC-CccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccC
Q 043667            6 KNLEQFCISGYRGAKFP-TWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIP   82 (387)
Q Consensus         6 ~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~   82 (387)
                      ++|++|+++++.+..++ ..+..  +++|++|++++| .++.+++  ++.+++|++|+++++ .++.++..        .
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~--l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--------~  119 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISF--LSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC--------P  119 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTT--CTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTS-CCCEECSC--------C
T ss_pred             CCcCEEECCCCCccccChhhhcc--CCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--------c
Confidence            45555555555555543 23443  555555555554 4444422  555555555555555 34444432        2


Q ss_pred             CCCcceeeccccCCccccc-cCcCCCCccCCCCcceEeeccCcccccccCCCCCCc--cEEEeccC
Q 043667           83 FPRLETLRFDAMLGWEDWI-PLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPAL--EMLVIEAC  145 (387)
Q Consensus        83 ~~~L~~L~l~~~~~l~~~~-~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~~~~L--~~L~l~~~  145 (387)
                      +++|++|+++++. +.... +    ..+..+++|++|+++++ .+.......+++|  +.|+++++
T Consensus       120 l~~L~~L~Ls~N~-l~~l~~p----~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~L~L~~L~L~~n  179 (562)
T 3a79_B          120 MASLRHLDLSFND-FDVLPVC----KEFGNLTKLTFLGLSAA-KFRQLDLLPVAHLHLSCILLDLV  179 (562)
T ss_dssp             CTTCSEEECCSSC-CSBCCCC----GGGGGCTTCCEEEEECS-BCCTTTTGGGTTSCEEEEEEEES
T ss_pred             cccCCEEECCCCC-ccccCch----HhhcccCcccEEecCCC-ccccCchhhhhhceeeEEEeecc
Confidence            5555555555532 21111 1    12334555666666554 2221112223344  55555544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.88  E-value=1.4e-20  Score=179.49  Aligned_cols=350  Identities=13%  Similarity=0.105  Sum_probs=237.5

Q ss_pred             cEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCC--CcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCc
Q 043667            9 EQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLP--SVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRL   86 (387)
Q Consensus         9 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L   86 (387)
                      +.++.++.....+|. +    .++|++|+++++ .++.++  .++++++|++|++.++.....++...     +..+++|
T Consensus        13 ~~~~c~~~~l~~lp~-l----~~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~-----~~~l~~L   81 (455)
T 3v47_A           13 YNAICINRGLHQVPE-L----PAHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNT-----FRGLSSL   81 (455)
T ss_dssp             TEEECCSSCCSSCCC-C----CTTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTT-----TTTCTTC
T ss_pred             cccCcCCCCcccCCC-C----CCccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECccc-----ccccccC
Confidence            345666777777886 2    468999999996 666664  38999999999999995544665443     3568999


Q ss_pred             ceeeccccCCccccccCcCCCCccCCCCcceEeeccCccccccc-----CCCCCCccEEEeccCcccc---c-cccCCCC
Q 043667           87 ETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTF-----PEHLPALEMLVIEACKELS---V-SVSSLPA  157 (387)
Q Consensus        87 ~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~-----~~~~~~L~~L~l~~~~~l~---~-~~~~~~~  157 (387)
                      ++|+++++. +....+    ..+..+++|++|+++++. +.+..     ...+++|+.|+++++....   . .+..+++
T Consensus        82 ~~L~Ls~n~-l~~~~~----~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  155 (455)
T 3v47_A           82 IILKLDYNQ-FLQLET----GAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR  155 (455)
T ss_dssp             CEEECTTCT-TCEECT----TTTTTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred             CEEeCCCCc-cCccCh----hhccCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc
Confidence            999999854 344433    556678999999999873 43222     3357899999999876322   2 2778899


Q ss_pred             cceEEEcCccceeE-ecccccC--CCCcEEeccCCCCcccccCCC--------CCCCccccceeEEEcCCCCcccccccc
Q 043667          158 LCKLKIGGCKKVVW-RSATDHL--GSQNSVVCRDTSNQVFLAGPL--------KPQLPKLEELILSTKEQTYIWKSHDGL  226 (387)
Q Consensus       158 L~~L~i~~~~~~~~-~~~~~~~--~~L~~L~l~~~~~l~~~~~~~--------~~~l~~L~~l~L~l~~~~~~~~~~~~~  226 (387)
                      |++|+++++..... +..+..+  ++|+.++++++.-. .++...        ...+++|++  +.++++......+..+
T Consensus       156 L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~-~~~~~~~~~~~~~~~~~~~~L~~--L~Ls~n~l~~~~~~~~  232 (455)
T 3v47_A          156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQ-DMNEYWLGWEKCGNPFKNTSITT--LDLSGNGFKESMAKRF  232 (455)
T ss_dssp             CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCT-TCSTTCTTHHHHCCTTTTCEEEE--EECTTSCCCHHHHHHH
T ss_pred             ccEEeCCCCcccccChhhhhccccccccccccccCccc-ccchhhccccccccccccceeee--EecCCCcccccchhhh
Confidence            99999998765442 2333333  67888888876432 222111        224567777  8888876544444332


Q ss_pred             cc--cCCCccEEEecCCCCcccchhhH-----HHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCC
Q 043667          227 LQ--DICSLKKLTIDWCPKLQSLVAEE-----EKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCS  299 (387)
Q Consensus       227 l~--~~~~L~~L~l~~~~~l~~~~~~~-----~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~  299 (387)
                      ..  ..++|+.|+++++..........     ....+..+  ..++|++|+++++.-....+..+..+++|+.|++++ +
T Consensus       233 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n  309 (455)
T 3v47_A          233 FDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGL--EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ-N  309 (455)
T ss_dssp             HHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGG--TTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTT-S
T ss_pred             hccccccceeeEeeccccccccccchhhhccCcccccccc--cccCceEEEecCccccccchhhcccCCCCCEEECCC-C
Confidence            11  23789999998764332211000     00011111  226899999998753334566788999999999998 4


Q ss_pred             CceecCCCCcC--CCceEEEeccCCCCCcc-ccccccCCCCCcceEecccCcccccccCC--CCCCCccEEeecCCcccc
Q 043667          300 SLVSFPEVALP--SKLKKIEIRKCDALKSL-PEAWMCDTNSSLETLKIERCRSLTYIAGV--QLPPSLKRLDIWNCDNIR  374 (387)
Q Consensus       300 ~l~~~~~~~~~--~~L~~L~l~~c~~l~~l-~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~C~~l~  374 (387)
                      .++.++...+.  ++|++|++++|. ++.+ +..+..+++  |++|++++| .++.++..  ..+++|++|++++ ++++
T Consensus       310 ~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~--L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~-N~l~  384 (455)
T 3v47_A          310 EINKIDDNAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDK--LEVLDLSYN-HIRALGDQSFLGLPNLKELALDT-NQLK  384 (455)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGGTTCTT--CCEEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCS
T ss_pred             cccccChhHhcCcccCCEEECCCCc-cCCcChhHhcCccc--CCEEECCCC-cccccChhhccccccccEEECCC-Cccc
Confidence            67777654443  899999999965 6666 456666777  999999996 77777443  5679999999999 5689


Q ss_pred             cccccc--ccccCC
Q 043667          375 TLTVEE--GVQSSS  386 (387)
Q Consensus       375 ~l~~~~--~~~~~~  386 (387)
                      .+|.++  +++.|+
T Consensus       385 ~~~~~~~~~l~~L~  398 (455)
T 3v47_A          385 SVPDGIFDRLTSLQ  398 (455)
T ss_dssp             CCCTTTTTTCTTCC
T ss_pred             cCCHhHhccCCccc
Confidence            998654  355543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.88  E-value=5.2e-21  Score=182.07  Aligned_cols=302  Identities=17%  Similarity=0.125  Sum_probs=202.7

Q ss_pred             CCCCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCC
Q 043667            4 PHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPF   83 (387)
Q Consensus         4 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~   83 (387)
                      .+++|++|+++++....+| .++.  +++|++|++++| .++.+| ++.+++|++|+++++ .++.++        +..+
T Consensus        40 ~l~~L~~L~Ls~n~l~~~~-~l~~--l~~L~~L~Ls~n-~l~~~~-~~~l~~L~~L~Ls~N-~l~~~~--------~~~l  105 (457)
T 3bz5_A           40 QLATLTSLDCHNSSITDMT-GIEK--LTGLTKLICTSN-NITTLD-LSQNTNLTYLACDSN-KLTNLD--------VTPL  105 (457)
T ss_dssp             HHTTCCEEECCSSCCCCCT-TGGG--CTTCSEEECCSS-CCSCCC-CTTCTTCSEEECCSS-CCSCCC--------CTTC
T ss_pred             HcCCCCEEEccCCCcccCh-hhcc--cCCCCEEEccCC-cCCeEc-cccCCCCCEEECcCC-CCceee--------cCCC
Confidence            3578999999999888887 4555  899999999996 677776 889999999999998 565553        3468


Q ss_pred             CCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCCCCCccEEEeccCcccc-ccccCCCCcceEE
Q 043667           84 PRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELS-VSVSSLPALCKLK  162 (387)
Q Consensus        84 ~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~L~~L~  162 (387)
                      ++|++|+++++. +...       .+..+++|+.|+++++ .+++.-...+++|+.|+++++..+. ..+..+++|+.|+
T Consensus       106 ~~L~~L~L~~N~-l~~l-------~~~~l~~L~~L~l~~N-~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~  176 (457)
T 3bz5_A          106 TKLTYLNCDTNK-LTKL-------DVSQNPLLTYLNCARN-TLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLD  176 (457)
T ss_dssp             TTCCEEECCSSC-CSCC-------CCTTCTTCCEEECTTS-CCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEE
T ss_pred             CcCCEEECCCCc-CCee-------cCCCCCcCCEEECCCC-ccceeccccCCcCCEEECCCCCcccccccccCCcCCEEE
Confidence            999999998753 3332       1345889999999887 4443323457899999998885443 3577888999999


Q ss_pred             EcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCC
Q 043667          163 IGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCP  242 (387)
Q Consensus       163 i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  242 (387)
                      ++++....++  +..+++|++|+++++. +..+   ....+++|++  +.++++. ++.+|   ++.+++|+.|+++++ 
T Consensus       177 ls~n~l~~l~--l~~l~~L~~L~l~~N~-l~~~---~l~~l~~L~~--L~Ls~N~-l~~ip---~~~l~~L~~L~l~~N-  243 (457)
T 3bz5_A          177 CSFNKITELD--VSQNKLLNRLNCDTNN-ITKL---DLNQNIQLTF--LDCSSNK-LTEID---VTPLTQLTYFDCSVN-  243 (457)
T ss_dssp             CCSSCCCCCC--CTTCTTCCEEECCSSC-CSCC---CCTTCTTCSE--EECCSSC-CSCCC---CTTCTTCSEEECCSS-
T ss_pred             CCCCccceec--cccCCCCCEEECcCCc-CCee---ccccCCCCCE--EECcCCc-ccccC---ccccCCCCEEEeeCC-
Confidence            9887554443  5677899999998764 2333   2456778888  8888764 44455   457889999999885 


Q ss_pred             CcccchhhHHHHHHhhh---hhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCC---------cC
Q 043667          243 KLQSLVAEEEKDQQQQL---CELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVA---------LP  310 (387)
Q Consensus       243 ~l~~~~~~~~~~~~~~l---~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~---------~~  310 (387)
                      .+..++..    .+..+   .-...+|+.|++++|..+..+|  ...+++|+.|++++|..++.++...         -.
T Consensus       244 ~l~~~~~~----~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~  317 (457)
T 3bz5_A          244 PLTELDVS----TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQN  317 (457)
T ss_dssp             CCSCCCCT----TCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTC
T ss_pred             cCCCcCHH----HCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhc
Confidence            44444322    12111   0011244455555555444444  3567888888888887666555311         11


Q ss_pred             CCceEEEeccCCCCCccccccccCCCCCcceEecccCcccccc
Q 043667          311 SKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYI  353 (387)
Q Consensus       311 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~  353 (387)
                      ++|++|+++++ .++.++  +..++.  |+.|++++ ++++.+
T Consensus       318 ~~L~~L~L~~N-~l~~l~--l~~l~~--L~~L~l~~-N~l~~l  354 (457)
T 3bz5_A          318 PKLVYLYLNNT-ELTELD--VSHNTK--LKSLSCVN-AHIQDF  354 (457)
T ss_dssp             TTCCEEECTTC-CCSCCC--CTTCTT--CSEEECCS-SCCCBC
T ss_pred             ccCCEEECCCC-cccccc--cccCCc--CcEEECCC-CCCCCc
Confidence            56666666653 355553  444555  88888777 355554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.88  E-value=4.1e-21  Score=184.35  Aligned_cols=288  Identities=15%  Similarity=0.141  Sum_probs=220.2

Q ss_pred             CCCCcEEEEcCcCCCCC-CCccCCccCCCccEEEeecCCCCCCCC--CcCCcCCCcEEEecCCCCceEeCccccCCCccc
Q 043667            5 HKNLEQFCISGYRGAKF-PTWFGDSSFSNLVTLKFEYCGMCPTLP--SVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAI   81 (387)
Q Consensus         5 ~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~l~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~   81 (387)
                      ++++++|+++++.+..+ |..+..  +++|++|++++| .++.++  .++.+++|++|+++++ .++.++...     +.
T Consensus        31 ~~~l~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-----~~  101 (477)
T 2id5_A           31 PTETRLLDLGKNRIKTLNQDEFAS--FPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGV-----FT  101 (477)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTT--CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTS-----ST
T ss_pred             CCCCcEEECCCCccceECHhHccC--CCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCC-cCCccCccc-----cc
Confidence            46899999999998887 456666  999999999996 666664  3889999999999998 677776654     34


Q ss_pred             CCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccC---CCCCCccEEEeccCcccc---ccccCC
Q 043667           82 PFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFP---EHLPALEMLVIEACKELS---VSVSSL  155 (387)
Q Consensus        82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~---~~~~~L~~L~l~~~~~l~---~~~~~~  155 (387)
                      .+++|++|+++++. +.....    ..+..+++|+.|+++++. +.+..+   ..+++|+.|+++++..-.   ..+..+
T Consensus       102 ~l~~L~~L~Ls~n~-i~~~~~----~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l  175 (477)
T 2id5_A          102 GLSNLTKLDISENK-IVILLD----YMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL  175 (477)
T ss_dssp             TCTTCCEEECTTSC-CCEECT----TTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTC
T ss_pred             CCCCCCEEECCCCc-cccCCh----hHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCcccChhHhccc
Confidence            68999999999754 333333    445578999999999873 332333   347899999999886322   347889


Q ss_pred             CCcceEEEcCccceeEe-cccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCcc
Q 043667          156 PALCKLKIGGCKKVVWR-SATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLK  234 (387)
Q Consensus       156 ~~L~~L~i~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~  234 (387)
                      ++|+.|++.++....+. ..+..+++|++|+++++.....++... ....+|++  +.+.++. ++.++...++.+++|+
T Consensus       176 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~--L~l~~n~-l~~~~~~~~~~l~~L~  251 (477)
T 2id5_A          176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC-LYGLNLTS--LSITHCN-LTAVPYLAVRHLVYLR  251 (477)
T ss_dssp             TTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT-TTTCCCSE--EEEESSC-CCSCCHHHHTTCTTCC
T ss_pred             CCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc-ccCccccE--EECcCCc-ccccCHHHhcCccccC
Confidence            99999999988665543 356778999999999988777766553 23347888  9998864 6677766678899999


Q ss_pred             EEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCc-ccccCCCCCccEEEecCCCCceecCCCCcC--C
Q 043667          235 KLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKL-PQSSLSLSSLREIDIYDCSSLVSFPEVALP--S  311 (387)
Q Consensus       235 ~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~  311 (387)
                      +|+++++ .+..++..    .+..+    ++|++|+++++. ++.+ +..+..+++|+.|++++ +.++.++...+.  +
T Consensus       252 ~L~Ls~n-~l~~~~~~----~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~  320 (477)
T 2id5_A          252 FLNLSYN-PISTIEGS----MLHEL----LRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSG-NQLTTLEESVFHSVG  320 (477)
T ss_dssp             EEECCSS-CCCEECTT----SCTTC----TTCCEEECCSSC-CSEECTTTBTTCTTCCEEECCS-SCCSCCCGGGBSCGG
T ss_pred             eeECCCC-cCCccChh----hcccc----ccCCEEECCCCc-cceECHHHhcCcccCCEEECCC-CcCceeCHhHcCCCc
Confidence            9999986 45555543    35555    899999999864 5555 55688999999999998 578888766554  7


Q ss_pred             CceEEEeccCC
Q 043667          312 KLKKIEIRKCD  322 (387)
Q Consensus       312 ~L~~L~l~~c~  322 (387)
                      +|++|++++++
T Consensus       321 ~L~~L~l~~N~  331 (477)
T 2id5_A          321 NLETLILDSNP  331 (477)
T ss_dssp             GCCEEECCSSC
T ss_pred             ccCEEEccCCC
Confidence            99999999865

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=5.9e-21  Score=188.15  Aligned_cols=296  Identities=16%  Similarity=0.150  Sum_probs=159.1

Q ss_pred             CCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCC
Q 043667           30 FSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQ  107 (387)
Q Consensus        30 l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  107 (387)
                      +++++.++++++ .++.+|.  ++.+++|++|++.++ .+..++...     +..+++|++|+++++. +.....    .
T Consensus        50 l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~-----~~~l~~L~~L~L~~n~-l~~~~~----~  117 (597)
T 3oja_B           50 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYA-----FAYAHTIQKLYMGFNA-IRYLPP----H  117 (597)
T ss_dssp             GCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTS-CCCEECTTT-----TTTCTTCCEEECCSSC-CCCCCT----T
T ss_pred             CCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCC-CCCCCChHH-----hcCCCCCCEEECCCCc-CCCCCH----H
Confidence            455666666553 4555554  455666666666665 444444322     2345666666666532 333322    2


Q ss_pred             CccCCCCcceEeeccCcccccccC----CCCCCccEEEeccCcccc---ccccCCCCcceEEEcCccceeEecccccCCC
Q 043667          108 GVEGFPKLRELHILRCSKLQGTFP----EHLPALEMLVIEACKELS---VSVSSLPALCKLKIGGCKKVVWRSATDHLGS  180 (387)
Q Consensus       108 ~i~~~~~L~~L~l~~~~~l~~~~~----~~~~~L~~L~l~~~~~l~---~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~  180 (387)
                      .++.+++|+.|+++++ .+. .+|    ..+++|+.|+++++....   ..+..+++|+.|+++++....+  .+..+++
T Consensus       118 ~~~~l~~L~~L~L~~n-~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~  193 (597)
T 3oja_B          118 VFQNVPLLTVLVLERN-DLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPS  193 (597)
T ss_dssp             TTTTCTTCCEEECCSS-CCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--CGGGCTT
T ss_pred             HHcCCCCCCEEEeeCC-CCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc--Chhhhhh
Confidence            3334566666666655 333 222    224566666666554211   2355566666666666543332  1344566


Q ss_pred             CcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhh
Q 043667          181 QNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLC  260 (387)
Q Consensus       181 L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~  260 (387)
                      |+.|+++++. +..++     ..+.|+.  +.++++. +..++..   ..++|+.|+++++. +...+      ++..+ 
T Consensus       194 L~~L~l~~n~-l~~l~-----~~~~L~~--L~ls~n~-l~~~~~~---~~~~L~~L~L~~n~-l~~~~------~l~~l-  253 (597)
T 3oja_B          194 LFHANVSYNL-LSTLA-----IPIAVEE--LDASHNS-INVVRGP---VNVELTILKLQHNN-LTDTA------WLLNY-  253 (597)
T ss_dssp             CSEEECCSSC-CSEEE-----CCTTCSE--EECCSSC-CCEEECS---CCSCCCEEECCSSC-CCCCG------GGGGC-
T ss_pred             hhhhhcccCc-ccccc-----CCchhhe--eeccCCc-ccccccc---cCCCCCEEECCCCC-CCCCh------hhccC-
Confidence            6666666542 11111     1233444  6665543 3333332   23567777777643 33321      24444 


Q ss_pred             hccCCccEEEeccCCCCCCc-ccccCCCCCccEEEecCCCCceecCCCCc-CCCceEEEeccCCCCCccccccccCCCCC
Q 043667          261 ELSCRLEYLRLRYCKGLVKL-PQSSLSLSSLREIDIYDCSSLVSFPEVAL-PSKLKKIEIRKCDALKSLPEAWMCDTNSS  338 (387)
Q Consensus       261 ~~~~~L~~L~l~~c~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~-~~~L~~L~l~~c~~l~~l~~~~~~~~~~~  338 (387)
                         ++|+.|+++++. ++.+ |..+..+++|+.|++++ +.++.++.... .++|++|++++|. +..+|..+..+++  
T Consensus       254 ---~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~--  325 (597)
T 3oja_B          254 ---PGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDR--  325 (597)
T ss_dssp             ---TTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTT-SCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTT--
T ss_pred             ---CCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCC-CCCCCCCcccccCCCCcEEECCCCC-CCccCcccccCCC--
Confidence               777777777654 4433 44566777777777776 45666654332 2677777777653 6666666555566  


Q ss_pred             cceEecccCcccccccCCCCCCCccEEeecCCc
Q 043667          339 LETLKIERCRSLTYIAGVQLPPSLKRLDIWNCD  371 (387)
Q Consensus       339 L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~C~  371 (387)
                      |+.|++++| .++.++. ..+++|++|++++++
T Consensus       326 L~~L~L~~N-~l~~~~~-~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          326 LENLYLDHN-SIVTLKL-STHHTLKNLTLSHND  356 (597)
T ss_dssp             CSEEECCSS-CCCCCCC-CTTCCCSEEECCSSC
T ss_pred             CCEEECCCC-CCCCcCh-hhcCCCCEEEeeCCC
Confidence            777777775 5555543 345677777777644

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.86  E-value=3.5e-20  Score=176.34  Aligned_cols=277  Identities=15%  Similarity=0.102  Sum_probs=196.8

Q ss_pred             CCCCCCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCccc
Q 043667            2 LEPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAI   81 (387)
Q Consensus         2 ~~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~   81 (387)
                      +..+++|++|+++++....+|  ++.  +++|++|++++| .++.++ ++.+++|++|+++++ .++.++        +.
T Consensus        60 l~~l~~L~~L~Ls~n~l~~~~--~~~--l~~L~~L~Ls~N-~l~~~~-~~~l~~L~~L~L~~N-~l~~l~--------~~  124 (457)
T 3bz5_A           60 IEKLTGLTKLICTSNNITTLD--LSQ--NTNLTYLACDSN-KLTNLD-VTPLTKLTYLNCDTN-KLTKLD--------VS  124 (457)
T ss_dssp             GGGCTTCSEEECCSSCCSCCC--CTT--CTTCSEEECCSS-CCSCCC-CTTCTTCCEEECCSS-CCSCCC--------CT
T ss_pred             hcccCCCCEEEccCCcCCeEc--ccc--CCCCCEEECcCC-CCceee-cCCCCcCCEEECCCC-cCCeec--------CC
Confidence            456789999999999988876  555  999999999996 677775 899999999999999 565554        24


Q ss_pred             CCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCCCCCccEEEeccCccccccccCCCCcceE
Q 043667           82 PFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKL  161 (387)
Q Consensus        82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L  161 (387)
                      .+++|++|+++++. +...       .+..+++|+.|+++++..+...-...+++|+.|+++++..-...+..+++|+.|
T Consensus       125 ~l~~L~~L~l~~N~-l~~l-------~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L  196 (457)
T 3bz5_A          125 QNPLLTYLNCARNT-LTEI-------DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRL  196 (457)
T ss_dssp             TCTTCCEEECTTSC-CSCC-------CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCCCTTCTTCCEE
T ss_pred             CCCcCCEEECCCCc-ccee-------ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceeccccCCCCCEE
Confidence            68999999999753 3222       134588999999998855542223457899999999886443447788999999


Q ss_pred             EEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCc--------
Q 043667          162 KIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSL--------  233 (387)
Q Consensus       162 ~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L--------  233 (387)
                      +++++....+  .+..+++|++|+++++. +..++   ...+++|+.  +.++++. ++.++..   .+++|        
T Consensus       197 ~l~~N~l~~~--~l~~l~~L~~L~Ls~N~-l~~ip---~~~l~~L~~--L~l~~N~-l~~~~~~---~l~~L~~L~l~~n  264 (457)
T 3bz5_A          197 NCDTNNITKL--DLNQNIQLTFLDCSSNK-LTEID---VTPLTQLTY--FDCSVNP-LTELDVS---TLSKLTTLHCIQT  264 (457)
T ss_dssp             ECCSSCCSCC--CCTTCTTCSEEECCSSC-CSCCC---CTTCTTCSE--EECCSSC-CSCCCCT---TCTTCCEEECTTC
T ss_pred             ECcCCcCCee--ccccCCCCCEEECcCCc-ccccC---ccccCCCCE--EEeeCCc-CCCcCHH---HCCCCCEEeccCC
Confidence            9988764443  35678999999998764 33444   456778888  8888764 4444433   34444        


Q ss_pred             --cEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCccc--------ccCCCCCccEEEecCCCCcee
Q 043667          234 --KKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQ--------SSLSLSSLREIDIYDCSSLVS  303 (387)
Q Consensus       234 --~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~--------~~~~~~~L~~L~l~~c~~l~~  303 (387)
                        +.|++++|...+.++.       ..    +++|+.|++++|..+..+|.        .+..+++|+.|++++ +.++.
T Consensus       265 ~L~~L~l~~n~~~~~~~~-------~~----l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~-N~l~~  332 (457)
T 3bz5_A          265 DLLEIDLTHNTQLIYFQA-------EG----CRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNN-TELTE  332 (457)
T ss_dssp             CCSCCCCTTCTTCCEEEC-------TT----CTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTT-CCCSC
T ss_pred             CCCEEECCCCccCCcccc-------cc----cccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCC-Ccccc
Confidence              4555555554444432       12    38999999999876665543        245667888888887 56776


Q ss_pred             cCCCCcCCCceEEEeccCCCCCcc
Q 043667          304 FPEVALPSKLKKIEIRKCDALKSL  327 (387)
Q Consensus       304 ~~~~~~~~~L~~L~l~~c~~l~~l  327 (387)
                      ++ ....++|+.|+++++ .++++
T Consensus       333 l~-l~~l~~L~~L~l~~N-~l~~l  354 (457)
T 3bz5_A          333 LD-VSHNTKLKSLSCVNA-HIQDF  354 (457)
T ss_dssp             CC-CTTCTTCSEEECCSS-CCCBC
T ss_pred             cc-cccCCcCcEEECCCC-CCCCc
Confidence            64 222389999999874 46554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.86  E-value=3.3e-19  Score=169.47  Aligned_cols=294  Identities=20%  Similarity=0.192  Sum_probs=161.3

Q ss_pred             CCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCc
Q 043667            7 NLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRL   86 (387)
Q Consensus         7 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L   86 (387)
                      ++++|+++++....+|..     .++|++|+++++ .++.+|.  .+++|++|+++++ .+..++.         ..++|
T Consensus        72 ~l~~L~l~~~~l~~lp~~-----~~~L~~L~l~~n-~l~~lp~--~~~~L~~L~l~~n-~l~~l~~---------~~~~L  133 (454)
T 1jl5_A           72 QAHELELNNLGLSSLPEL-----PPHLESLVASCN-SLTELPE--LPQSLKSLLVDNN-NLKALSD---------LPPLL  133 (454)
T ss_dssp             TCSEEECTTSCCSCCCSC-----CTTCSEEECCSS-CCSSCCC--CCTTCCEEECCSS-CCSCCCS---------CCTTC
T ss_pred             CCCEEEecCCccccCCCC-----cCCCCEEEccCC-cCCcccc--ccCCCcEEECCCC-ccCcccC---------CCCCC
Confidence            356777777776666652     356777777764 5555664  2467777777776 4444332         12578


Q ss_pred             ceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCCCCCccEEEeccCcccc-ccccCCCCcceEEEcC
Q 043667           87 ETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELS-VSVSSLPALCKLKIGG  165 (387)
Q Consensus        87 ~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~L~~L~i~~  165 (387)
                      ++|+++++. +...      ..+..+++|++|+++++ .++ .+|...++|+.|+++++.... ..++.+++|++|++++
T Consensus       134 ~~L~L~~n~-l~~l------p~~~~l~~L~~L~l~~N-~l~-~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~  204 (454)
T 1jl5_A          134 EYLGVSNNQ-LEKL------PELQNSSFLKIIDVDNN-SLK-KLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADN  204 (454)
T ss_dssp             CEEECCSSC-CSSC------CCCTTCTTCCEEECCSS-CCS-CCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCS
T ss_pred             CEEECcCCC-CCCC------cccCCCCCCCEEECCCC-cCc-ccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCC
Confidence            888887642 3222      23445778888888776 454 466667788888887765221 2466777888888877


Q ss_pred             ccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcc
Q 043667          166 CKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQ  245 (387)
Q Consensus       166 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~  245 (387)
                      +....++.   ..++|++|+++++. +..++.  ...+++|++  +.++++. +..+|.    .+++|++|+++++ .+.
T Consensus       205 N~l~~l~~---~~~~L~~L~l~~n~-l~~lp~--~~~l~~L~~--L~l~~N~-l~~l~~----~~~~L~~L~l~~N-~l~  270 (454)
T 1jl5_A          205 NSLKKLPD---LPLSLESIVAGNNI-LEELPE--LQNLPFLTT--IYADNNL-LKTLPD----LPPSLEALNVRDN-YLT  270 (454)
T ss_dssp             SCCSSCCC---CCTTCCEEECCSSC-CSSCCC--CTTCTTCCE--EECCSSC-CSSCCS----CCTTCCEEECCSS-CCS
T ss_pred             CcCCcCCC---CcCcccEEECcCCc-CCcccc--cCCCCCCCE--EECCCCc-CCcccc----cccccCEEECCCC-ccc
Confidence            65433322   23577777777763 334442  346666776  7776643 333443    2356777777764 333


Q ss_pred             cchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCCC
Q 043667          246 SLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALK  325 (387)
Q Consensus       246 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~  325 (387)
                      .++..            +++|++|++++|. ++.++..   .++|+.|++++ +.++.++  ..+++|++|+++++ .++
T Consensus       271 ~l~~~------------~~~L~~L~ls~N~-l~~l~~~---~~~L~~L~l~~-N~l~~i~--~~~~~L~~L~Ls~N-~l~  330 (454)
T 1jl5_A          271 DLPEL------------PQSLTFLDVSENI-FSGLSEL---PPNLYYLNASS-NEIRSLC--DLPPSLEELNVSNN-KLI  330 (454)
T ss_dssp             CCCCC------------CTTCCEEECCSSC-CSEESCC---CTTCCEEECCS-SCCSEEC--CCCTTCCEEECCSS-CCS
T ss_pred             ccCcc------------cCcCCEEECcCCc-cCcccCc---CCcCCEEECcC-CcCCccc--CCcCcCCEEECCCC-ccc
Confidence            33321            1566666666543 4433321   13455555554 2344333  12234555555442 244


Q ss_pred             ccccccccCCCCCcceEecccCcccccccCCCCCCCccEEeecC
Q 043667          326 SLPEAWMCDTNSSLETLKIERCRSLTYIAGVQLPPSLKRLDIWN  369 (387)
Q Consensus       326 ~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~  369 (387)
                      .+|..   +++  |++|++++| +++.++.  .+++|++|++++
T Consensus       331 ~lp~~---~~~--L~~L~L~~N-~l~~lp~--~l~~L~~L~L~~  366 (454)
T 1jl5_A          331 ELPAL---PPR--LERLIASFN-HLAEVPE--LPQNLKQLHVEY  366 (454)
T ss_dssp             CCCCC---CTT--CCEEECCSS-CCSCCCC--CCTTCCEEECCS
T ss_pred             ccccc---CCc--CCEEECCCC-ccccccc--hhhhccEEECCC
Confidence            44433   233  555555543 3444443  334455555544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.86  E-value=9.4e-20  Score=173.25  Aligned_cols=259  Identities=21%  Similarity=0.178  Sum_probs=112.9

Q ss_pred             CCCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecC-------------------CCCCCCCCcCCcCCCcEEEecCCC
Q 043667            5 HKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYC-------------------GMCPTLPSVGQLPSLKHLAVCGMT   65 (387)
Q Consensus         5 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c-------------------~~~~~l~~~~~l~~L~~L~l~~~~   65 (387)
                      +++|++|+++++....+|..     +++|++|++++|                   ..++.+|.++.+++|++|+++++ 
T Consensus        90 ~~~L~~L~l~~n~l~~lp~~-----~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N-  163 (454)
T 1jl5_A           90 PPHLESLVASCNSLTELPEL-----PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNN-  163 (454)
T ss_dssp             CTTCSEEECCSSCCSSCCCC-----CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS-
T ss_pred             cCCCCEEEccCCcCCccccc-----cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCcccCCCCCCCEEECCCC-
Confidence            35777777777777666643     244555555543                   13333444444444444444444 


Q ss_pred             CceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCCCCCccEEEeccC
Q 043667           66 SVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEAC  145 (387)
Q Consensus        66 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~  145 (387)
                      .++.++.         ..++|++|+++++. +...      ..+..+++|+.|+++++ .+. .+|...++|+.|+++++
T Consensus       164 ~l~~lp~---------~~~~L~~L~L~~n~-l~~l------~~~~~l~~L~~L~l~~N-~l~-~l~~~~~~L~~L~l~~n  225 (454)
T 1jl5_A          164 SLKKLPD---------LPPSLEFIAAGNNQ-LEEL------PELQNLPFLTAIYADNN-SLK-KLPDLPLSLESIVAGNN  225 (454)
T ss_dssp             CCSCCCC---------CCTTCCEEECCSSC-CSSC------CCCTTCTTCCEEECCSS-CCS-SCCCCCTTCCEEECCSS
T ss_pred             cCcccCC---------CcccccEEECcCCc-CCcC------ccccCCCCCCEEECCCC-cCC-cCCCCcCcccEEECcCC
Confidence            2322221         12344444444421 1111      11223455555555444 222 23443445555555544


Q ss_pred             cccc-ccccCCCCcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccc
Q 043667          146 KELS-VSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHD  224 (387)
Q Consensus       146 ~~l~-~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~  224 (387)
                      .... ..++.+++|++|+++++....++.   .+++|++|+++++. +..++    ..+++|++  +.++++. +..++.
T Consensus       226 ~l~~lp~~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~N~-l~~l~----~~~~~L~~--L~ls~N~-l~~l~~  294 (454)
T 1jl5_A          226 ILEELPELQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNY-LTDLP----ELPQSLTF--LDVSENI-FSGLSE  294 (454)
T ss_dssp             CCSSCCCCTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSC-CSCCC----CCCTTCCE--EECCSSC-CSEESC
T ss_pred             cCCcccccCCCCCCCEEECCCCcCCcccc---cccccCEEECCCCc-ccccC----cccCcCCE--EECcCCc-cCcccC
Confidence            3111 124444555555555443222221   12455555555432 22221    11234444  4444432 222221


Q ss_pred             cccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceec
Q 043667          225 GLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSF  304 (387)
Q Consensus       225 ~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~  304 (387)
                          ..++|++|+++++ .+..++.            .+++|++|+++++ .++.+|..   +++|+.|+++++ .++.+
T Consensus       295 ----~~~~L~~L~l~~N-~l~~i~~------------~~~~L~~L~Ls~N-~l~~lp~~---~~~L~~L~L~~N-~l~~l  352 (454)
T 1jl5_A          295 ----LPPNLYYLNASSN-EIRSLCD------------LPPSLEELNVSNN-KLIELPAL---PPRLERLIASFN-HLAEV  352 (454)
T ss_dssp             ----CCTTCCEEECCSS-CCSEECC------------CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSCC
T ss_pred             ----cCCcCCEEECcCC-cCCcccC------------CcCcCCEEECCCC-cccccccc---CCcCCEEECCCC-ccccc
Confidence                1234555555543 2222211            0135566666553 34444432   355666666553 45555


Q ss_pred             CCCCcCCCceEEEeccCC
Q 043667          305 PEVALPSKLKKIEIRKCD  322 (387)
Q Consensus       305 ~~~~~~~~L~~L~l~~c~  322 (387)
                      +.  ..++|++|+++++.
T Consensus       353 p~--~l~~L~~L~L~~N~  368 (454)
T 1jl5_A          353 PE--LPQNLKQLHVEYNP  368 (454)
T ss_dssp             CC--CCTTCCEEECCSSC
T ss_pred             cc--hhhhccEEECCCCC
Confidence            54  33566666665543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.86  E-value=5.4e-20  Score=180.11  Aligned_cols=331  Identities=13%  Similarity=0.077  Sum_probs=210.0

Q ss_pred             CCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCC--CcCCcCCCcEEEecCCCCceEeCccccCCCcccCCC
Q 043667            7 NLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLP--SVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFP   84 (387)
Q Consensus         7 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~   84 (387)
                      ..++++++++....+|..+    .++|++|++++| .++.++  .++.+++|++|+++++ .++.++...     +..++
T Consensus        32 ~~~~l~ls~~~L~~ip~~~----~~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-----~~~l~  100 (562)
T 3a79_B           32 LESMVDYSNRNLTHVPKDL----PPRTKALSLSQN-SISELRMPDISFLSELRVLRLSHN-RIRSLDFHV-----FLFNQ  100 (562)
T ss_dssp             -CCEEECTTSCCCSCCTTS----CTTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTT-----TTTCT
T ss_pred             CCcEEEcCCCCCccCCCCC----CCCcCEEECCCC-CccccChhhhccCCCccEEECCCC-CCCcCCHHH-----hCCCC
Confidence            4467777777777777643    367888888775 566665  3777888888888877 566664433     24577


Q ss_pred             CcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccC---CCCCCccEEEeccCccccccccCCCCc--c
Q 043667           85 RLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFP---EHLPALEMLVIEACKELSVSVSSLPAL--C  159 (387)
Q Consensus        85 ~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~~~L--~  159 (387)
                      +|++|+++++. +.....    .   .+++|++|+++++.-.....|   ..+++|+.|+++++..-...+..+++|  +
T Consensus       101 ~L~~L~Ls~N~-l~~lp~----~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~  172 (562)
T 3a79_B          101 DLEYLDVSHNR-LQNISC----C---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLS  172 (562)
T ss_dssp             TCCEEECTTSC-CCEECS----C---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEE
T ss_pred             CCCEEECCCCc-CCccCc----c---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceee
Confidence            78888887643 333322    1   477788888877632211122   236777888877765333334444444  6


Q ss_pred             eEEEcCccc--ee-----Eec----------------------ccccC--------------------------------
Q 043667          160 KLKIGGCKK--VV-----WRS----------------------ATDHL--------------------------------  178 (387)
Q Consensus       160 ~L~i~~~~~--~~-----~~~----------------------~~~~~--------------------------------  178 (387)
                      .|+++++..  ..     +..                      ....+                                
T Consensus       173 ~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~  252 (562)
T 3a79_B          173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL  252 (562)
T ss_dssp             EEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCE
T ss_pred             EEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcce
Confidence            666655432  00     000                      00001                                


Q ss_pred             -----------------------CCCcEEeccCCCCcccccCC-------------------------------------
Q 043667          179 -----------------------GSQNSVVCRDTSNQVFLAGP-------------------------------------  198 (387)
Q Consensus       179 -----------------------~~L~~L~l~~~~~l~~~~~~-------------------------------------  198 (387)
                                             ++|++|+++++.-...++..                                     
T Consensus       253 ~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~  332 (562)
T 3a79_B          253 NVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN  332 (562)
T ss_dssp             EEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCC
T ss_pred             EEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCc
Confidence                                   13444444333211011110                                     


Q ss_pred             --------------C-CCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhcc
Q 043667          199 --------------L-KPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELS  263 (387)
Q Consensus       199 --------------~-~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~  263 (387)
                                    . +..+++|++  +.++++......+.. ++.+++|++|+++++ .+..++..  +..+..+    
T Consensus       333 L~~L~l~~n~~~~~~~~~~l~~L~~--L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~--~~~~~~l----  402 (562)
T 3a79_B          333 IKMLSISDTPFIHMVCPPSPSSFTF--LNFTQNVFTDSVFQG-CSTLKRLQTLILQRN-GLKNFFKV--ALMTKNM----  402 (562)
T ss_dssp             CSEEEEESSCCCCCCCCSSCCCCCE--EECCSSCCCTTTTTT-CCSCSSCCEEECCSS-CCCBTTHH--HHTTTTC----
T ss_pred             ceEEEccCCCcccccCccCCCCceE--EECCCCccccchhhh-hcccCCCCEEECCCC-CcCCcccc--hhhhcCC----
Confidence                          0 156677888  888887654445544 678999999999985 55554321  1135555    


Q ss_pred             CCccEEEeccCCCCCC-cccc-cCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCCCccccccccCCCCCcce
Q 043667          264 CRLEYLRLRYCKGLVK-LPQS-SLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLET  341 (387)
Q Consensus       264 ~~L~~L~l~~c~~l~~-~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~  341 (387)
                      ++|++|+++++. ++. +|.. +..+++|+.|+++++ .++......++++|++|+++++ .++.+|..+..+++  |++
T Consensus       403 ~~L~~L~l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~--L~~  477 (562)
T 3a79_B          403 SSLETLDVSLNS-LNSHAYDRTCAWAESILVLNLSSN-MLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQA--LQE  477 (562)
T ss_dssp             TTCCEEECTTSC-CBSCCSSCCCCCCTTCCEEECCSS-CCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCC--CSE
T ss_pred             CCCCEEECCCCc-CCCccChhhhcCcccCCEEECCCC-CCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCC--CCE
Confidence            999999999865 554 7764 678899999999995 5543333344479999999986 68999987776777  999


Q ss_pred             EecccCcccccccCC--CCCCCccEEeecCCcc
Q 043667          342 LKIERCRSLTYIAGV--QLPPSLKRLDIWNCDN  372 (387)
Q Consensus       342 L~l~~c~~l~~~~~~--~~~~~L~~L~l~~C~~  372 (387)
                      |+++++ +++.++..  ..+++|++|++++++-
T Consensus       478 L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          478 LNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPW  509 (562)
T ss_dssp             EECCSS-CCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred             EECCCC-CCCCCCHHHHhcCCCCCEEEecCCCc
Confidence            999995 88888875  5678999999998663

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.86  E-value=2.4e-20  Score=174.29  Aligned_cols=302  Identities=14%  Similarity=0.156  Sum_probs=225.4

Q ss_pred             CCCCcEEEEcCcCCCCCCCcc-CCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCccc
Q 043667            5 HKNLEQFCISGYRGAKFPTWF-GDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAI   81 (387)
Q Consensus         5 ~~~L~~L~l~~~~~~~~p~~~-~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~   81 (387)
                      .+++++++++++....+|..+ ..  +++|++|+++++ .++.++.  ++.+++|++|++.++ .+..++...     +.
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~--l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-----~~  114 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDS--FRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHV-----FQ  114 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHH--CCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTT-----TT
T ss_pred             cCCceEEEecCCchhhCChhHhcc--cccCcEEECCCC-cccccChhhccCCCCcCEEECCCC-CCCcCCHHH-----hc
Confidence            479999999999988888754 44  899999999996 6777763  889999999999999 666666543     34


Q ss_pred             CCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccC---CCCCCccEEEeccCccccccccCCCCc
Q 043667           82 PFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFP---EHLPALEMLVIEACKELSVSVSSLPAL  158 (387)
Q Consensus        82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~~~L  158 (387)
                      .+++|++|++.++ .+.....    ..+..+++|++|+++++ .+.+..+   ..+++|+.|+++++..-...+..+++|
T Consensus       115 ~l~~L~~L~L~~n-~l~~l~~----~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L  188 (390)
T 3o6n_A          115 NVPLLTVLVLERN-DLSSLPR----GIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL  188 (390)
T ss_dssp             TCTTCCEEECCSS-CCCCCCT----TTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTC
T ss_pred             CCCCCCEEECCCC-ccCcCCH----HHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCcccccccccc
Confidence            6899999999985 3444332    23356899999999987 3442333   347899999999987555567788999


Q ss_pred             ceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEe
Q 043667          159 CKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTI  238 (387)
Q Consensus       159 ~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l  238 (387)
                      +.++++++....+    ...++|++|+++++. +..++..   ..++|++  +.+.++.. +..+  .++.+++|++|++
T Consensus       189 ~~L~l~~n~l~~~----~~~~~L~~L~l~~n~-l~~~~~~---~~~~L~~--L~l~~n~l-~~~~--~l~~l~~L~~L~L  255 (390)
T 3o6n_A          189 FHANVSYNLLSTL----AIPIAVEELDASHNS-INVVRGP---VNVELTI--LKLQHNNL-TDTA--WLLNYPGLVEVDL  255 (390)
T ss_dssp             SEEECCSSCCSEE----ECCSSCSEEECCSSC-CCEEECC---CCSSCCE--EECCSSCC-CCCG--GGGGCTTCSEEEC
T ss_pred             ceeeccccccccc----CCCCcceEEECCCCe-eeecccc---ccccccE--EECCCCCC-cccH--HHcCCCCccEEEC
Confidence            9999998754332    235789999999864 3333332   3467777  88888754 3332  3678999999999


Q ss_pred             cCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCC-cCCCceEEE
Q 043667          239 DWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVA-LPSKLKKIE  317 (387)
Q Consensus       239 ~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~L~~L~  317 (387)
                      +++ .+..+.+.    .+..+    ++|++|+++++ .++.++.....+++|+.|+++++ .++.++... ..++|++|+
T Consensus       256 s~n-~l~~~~~~----~~~~l----~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~  324 (390)
T 3o6n_A          256 SYN-ELEKIMYH----PFVKM----QRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLY  324 (390)
T ss_dssp             CSS-CCCEEESG----GGTTC----SSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEE
T ss_pred             CCC-cCCCcChh----Hcccc----ccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEE
Confidence            996 45544333    45655    99999999985 57888877788999999999995 777776432 128999999


Q ss_pred             eccCCCCCccccccccCCCCCcceEecccCcccc
Q 043667          318 IRKCDALKSLPEAWMCDTNSSLETLKIERCRSLT  351 (387)
Q Consensus       318 l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~  351 (387)
                      +++|. ++.++  +..++.  |++|+++++ .++
T Consensus       325 L~~N~-i~~~~--~~~~~~--L~~L~l~~N-~~~  352 (390)
T 3o6n_A          325 LDHNS-IVTLK--LSTHHT--LKNLTLSHN-DWD  352 (390)
T ss_dssp             CCSSC-CCCCC--CCTTCC--CSEEECCSS-CEE
T ss_pred             CCCCc-cceeC--chhhcc--CCEEEcCCC-Ccc
Confidence            99865 77776  344666  999999995 444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.84  E-value=4.2e-19  Score=176.12  Aligned_cols=153  Identities=20%  Similarity=0.230  Sum_probs=104.3

Q ss_pred             CCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCC-c
Q 043667          202 QLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVK-L  280 (387)
Q Consensus       202 ~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~-~  280 (387)
                      .++.|+.  +.+..+......+...+..+++++.++++.+ .+....+.    .+..+    ++++.|+++++..... .
T Consensus       418 ~l~~L~~--l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n-~l~~~~~~----~~~~~----~~L~~L~Ls~N~~~~~~~  486 (635)
T 4g8a_A          418 GLEQLEH--LDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNG----IFNGL----SSLEVLKMAGNSFQENFL  486 (635)
T ss_dssp             TCTTCCE--EECTTSEEESTTSSCTTTTCTTCCEEECTTS-CCEECCTT----TTTTC----TTCCEEECTTCEEGGGEE
T ss_pred             ccccccc--hhhhhcccccccccccccccccccccccccc-cccccccc----ccccc----hhhhhhhhhhcccccccC
Confidence            4455555  5555544444444444566777888888764 33333222    23333    8899999988765544 4


Q ss_pred             ccccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCcccc-ccccCCCCCcceEecccCcccccccCC-
Q 043667          281 PQSSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPE-AWMCDTNSSLETLKIERCRSLTYIAGV-  356 (387)
Q Consensus       281 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~-  356 (387)
                      |..+..+++|+.|++++| .++.++...+.  ++|++|+++++ .++.++. .+..+++  |++|+++++ +++.++.. 
T Consensus       487 ~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~--L~~L~Ls~N-~l~~~~~~~  561 (635)
T 4g8a_A          487 PDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNS--LQVLDYSLN-HIMTSKKQE  561 (635)
T ss_dssp             CSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTT--CCEEECTTS-CCCBCCSSC
T ss_pred             chhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCC--CCEEECCCC-cCCCCCHHH
Confidence            556788899999999984 78888765554  89999999985 5777754 4555677  999999994 78777665 


Q ss_pred             --CCCCCccEEeecCC
Q 043667          357 --QLPPSLKRLDIWNC  370 (387)
Q Consensus       357 --~~~~~L~~L~l~~C  370 (387)
                        ..+++|++|++++.
T Consensus       562 l~~l~~~L~~L~L~~N  577 (635)
T 4g8a_A          562 LQHFPSSLAFLNLTQN  577 (635)
T ss_dssp             TTCCCTTCCEEECTTC
T ss_pred             HHhhhCcCCEEEeeCC
Confidence              23468999999863

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.84  E-value=1.1e-19  Score=179.20  Aligned_cols=299  Identities=14%  Similarity=0.162  Sum_probs=221.5

Q ss_pred             CCCCcEEEEcCcCCCCCCCcc-CCccCCCccEEEeecCCCCCCCC--CcCCcCCCcEEEecCCCCceEeCccccCCCccc
Q 043667            5 HKNLEQFCISGYRGAKFPTWF-GDSSFSNLVTLKFEYCGMCPTLP--SVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAI   81 (387)
Q Consensus         5 ~~~L~~L~l~~~~~~~~p~~~-~~~~l~~L~~L~l~~c~~~~~l~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~   81 (387)
                      ..+++.++++++....+|..+ ..  +++|++|++++| .+..++  .++.+++|++|++.++ .+..++...     +.
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~--l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-----~~  120 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDS--FRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHV-----FQ  120 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHH--CCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTT-----TT
T ss_pred             CCCceEEEeeCCCCCCcCHHHHcc--CCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHH-----Hc
Confidence            478999999999888887754 33  899999999996 677766  4889999999999999 577676554     34


Q ss_pred             CCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCC---CCCCccEEEeccCccccccccCCCCc
Q 043667           82 PFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPE---HLPALEMLVIEACKELSVSVSSLPAL  158 (387)
Q Consensus        82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~~~L  158 (387)
                      .+++|++|+++++ .+.....    ..+..+++|+.|+++++ .+.+..|.   .+++|+.|+++++......+..+++|
T Consensus       121 ~l~~L~~L~L~~n-~l~~l~~----~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L  194 (597)
T 3oja_B          121 NVPLLTVLVLERN-DLSSLPR----GIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL  194 (597)
T ss_dssp             TCTTCCEEECCSS-CCCCCCT----TTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTC
T ss_pred             CCCCCCEEEeeCC-CCCCCCH----HHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhh
Confidence            6899999999986 3444432    33456899999999987 44434443   46899999999987555567788999


Q ss_pred             ceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEe
Q 043667          159 CKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTI  238 (387)
Q Consensus       159 ~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l  238 (387)
                      +.|+++++....+    ...++|+.|+++++. +..++..   ..++|+.  |.+.++... ..  ..++.+++|++|++
T Consensus       195 ~~L~l~~n~l~~l----~~~~~L~~L~ls~n~-l~~~~~~---~~~~L~~--L~L~~n~l~-~~--~~l~~l~~L~~L~L  261 (597)
T 3oja_B          195 FHANVSYNLLSTL----AIPIAVEELDASHNS-INVVRGP---VNVELTI--LKLQHNNLT-DT--AWLLNYPGLVEVDL  261 (597)
T ss_dssp             SEEECCSSCCSEE----ECCTTCSEEECCSSC-CCEEECS---CCSCCCE--EECCSSCCC-CC--GGGGGCTTCSEEEC
T ss_pred             hhhhcccCccccc----cCCchhheeeccCCc-ccccccc---cCCCCCE--EECCCCCCC-CC--hhhccCCCCCEEEC
Confidence            9999988754332    345789999999864 3334333   2356777  888877543 32  33678999999999


Q ss_pred             cCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCc-CCCceEEE
Q 043667          239 DWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVAL-PSKLKKIE  317 (387)
Q Consensus       239 ~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~-~~~L~~L~  317 (387)
                      +++ .+..+.+.    .+..+    ++|++|++++| .++.++..+..+++|+.|++++| .++.++.... .++|+.|+
T Consensus       262 s~N-~l~~~~~~----~~~~l----~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~  330 (597)
T 3oja_B          262 SYN-ELEKIMYH----PFVKM----QRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLY  330 (597)
T ss_dssp             CSS-CCCEEESG----GGTTC----SSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEE
T ss_pred             CCC-ccCCCCHH----HhcCc----cCCCEEECCCC-CCCCCCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEE
Confidence            986 44444333    35655    99999999985 57888887888999999999984 6777664321 28999999


Q ss_pred             eccCCCCCccccccccCCCCCcceEecccC
Q 043667          318 IRKCDALKSLPEAWMCDTNSSLETLKIERC  347 (387)
Q Consensus       318 l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c  347 (387)
                      +++|. +..++  +..+++  |+.|+++++
T Consensus       331 L~~N~-l~~~~--~~~~~~--L~~L~l~~N  355 (597)
T 3oja_B          331 LDHNS-IVTLK--LSTHHT--LKNLTLSHN  355 (597)
T ss_dssp             CCSSC-CCCCC--CCTTCC--CSEEECCSS
T ss_pred             CCCCC-CCCcC--hhhcCC--CCEEEeeCC
Confidence            99865 66665  334566  999999995

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.83  E-value=1.5e-18  Score=158.31  Aligned_cols=213  Identities=15%  Similarity=0.196  Sum_probs=113.9

Q ss_pred             CCCCcceEeeccCcccccccCCC-CCCccEEEeccCcccc---ccccCCCCcceEEEcCcccee---EecccccCCCCcE
Q 043667          111 GFPKLRELHILRCSKLQGTFPEH-LPALEMLVIEACKELS---VSVSSLPALCKLKIGGCKKVV---WRSATDHLGSQNS  183 (387)
Q Consensus       111 ~~~~L~~L~l~~~~~l~~~~~~~-~~~L~~L~l~~~~~l~---~~~~~~~~L~~L~i~~~~~~~---~~~~~~~~~~L~~  183 (387)
                      .+++|++|+++++ .++ .+|.. +++|+.|+++++..-.   ..+..+++|+.|+++++....   ....+..+++|++
T Consensus        98 ~l~~L~~L~Ls~n-~l~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~  175 (330)
T 1xku_A           98 PLVKLERLYLSKN-QLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY  175 (330)
T ss_dssp             TCTTCCEEECCSS-CCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred             CCCCCCEEECCCC-cCC-ccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCE
Confidence            3555555555544 222 23322 3455566555543211   235566677777776654321   2234455677777


Q ss_pred             EeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhcc
Q 043667          184 VVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELS  263 (387)
Q Consensus       184 L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~  263 (387)
                      |+++++. +..++...   .++|++  +.++++. ++.++...++.+++|++|+++++ .+..+++.    .+..+    
T Consensus       176 L~l~~n~-l~~l~~~~---~~~L~~--L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~----~~~~l----  239 (330)
T 1xku_A          176 IRIADTN-ITTIPQGL---PPSLTE--LHLDGNK-ITKVDAASLKGLNNLAKLGLSFN-SISAVDNG----SLANT----  239 (330)
T ss_dssp             EECCSSC-CCSCCSSC---CTTCSE--EECTTSC-CCEECTGGGTTCTTCCEEECCSS-CCCEECTT----TGGGS----
T ss_pred             EECCCCc-cccCCccc---cccCCE--EECCCCc-CCccCHHHhcCCCCCCEEECCCC-cCceeChh----hccCC----
Confidence            7776543 22333221   245555  6666554 44343334666777888888774 34444332    24444    


Q ss_pred             CCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcC--------CCceEEEeccCCCCCc---cccccc
Q 043667          264 CRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALP--------SKLKKIEIRKCDALKS---LPEAWM  332 (387)
Q Consensus       264 ~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~--------~~L~~L~l~~c~~l~~---l~~~~~  332 (387)
                      ++|++|++++| .++.+|.++..+++|+.|++++ +.++.++...+.        ++++.+++.+++ +..   .|..+.
T Consensus       240 ~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~-~~~~~i~~~~f~  316 (330)
T 1xku_A          240 PHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQYWEIQPSTFR  316 (330)
T ss_dssp             TTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS-SCGGGSCGGGGT
T ss_pred             CCCCEEECCCC-cCccCChhhccCCCcCEEECCC-CcCCccChhhcCCcccccccccccceEeecCc-ccccccCccccc
Confidence            77888888775 4667777777777888888877 466666544431        455566666543 221   123333


Q ss_pred             cCCCCCcceEeccc
Q 043667          333 CDTNSSLETLKIER  346 (387)
Q Consensus       333 ~~~~~~L~~L~l~~  346 (387)
                      +...  ++.+++++
T Consensus       317 ~~~~--l~~l~L~~  328 (330)
T 1xku_A          317 CVYV--RAAVQLGN  328 (330)
T ss_dssp             TCCC--GGGEEC--
T ss_pred             cccc--eeEEEecc
Confidence            3344  55555554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.83  E-value=2.4e-18  Score=170.61  Aligned_cols=127  Identities=17%  Similarity=0.172  Sum_probs=88.9

Q ss_pred             CCCCcEEEEcCcCCCCCC-CccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCccc
Q 043667            5 HKNLEQFCISGYRGAKFP-TWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAI   81 (387)
Q Consensus         5 ~~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~   81 (387)
                      |+++++|+++++.+..+| .++..  +++|++|++++| .++.+++  ++.+++|++|+++++ .++.++...|     .
T Consensus        51 p~~~~~LdLs~N~i~~l~~~~f~~--l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f-----~  121 (635)
T 4g8a_A           51 PFSTKNLDLSFNPLRHLGSYSFFS--FPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAF-----S  121 (635)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTT--CTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGG-----T
T ss_pred             CcCCCEEEeeCCCCCCCCHHHHhC--CCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHh-----c
Confidence            357899999999888885 45666  899999999986 7777775  788999999999998 6788876543     4


Q ss_pred             CCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccC---CCCCCccEEEeccC
Q 043667           82 PFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFP---EHLPALEMLVIEAC  145 (387)
Q Consensus        82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~---~~~~~L~~L~l~~~  145 (387)
                      .+++|++|++.++ .++....    ..++.+++|++|+++++.-.....|   ..+++|+.|+++++
T Consensus       122 ~L~~L~~L~Ls~N-~l~~l~~----~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  183 (635)
T 4g8a_A          122 GLSSLQKLVAVET-NLASLEN----FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  183 (635)
T ss_dssp             TCTTCCEEECTTS-CCCCSTT----CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             CCCCCCEEECCCC-cCCCCCh----hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence            5788888888875 3333332    3344577788887776532111222   23566777776654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.82  E-value=1.7e-18  Score=158.19  Aligned_cols=280  Identities=16%  Similarity=0.125  Sum_probs=143.3

Q ss_pred             CccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCccC
Q 043667           32 NLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEG  111 (387)
Q Consensus        32 ~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~  111 (387)
                      +++.++++++ .++.+|. .-.++|++|++.++ .+..++...     +..+++|++|++.++. +.....    ..+..
T Consensus        34 ~l~~l~~~~~-~l~~ip~-~~~~~l~~L~l~~n-~i~~~~~~~-----~~~l~~L~~L~L~~n~-l~~~~~----~~~~~  100 (332)
T 2ft3_A           34 HLRVVQCSDL-GLKAVPK-EISPDTTLLDLQNN-DISELRKDD-----FKGLQHLYALVLVNNK-ISKIHE----KAFSP  100 (332)
T ss_dssp             ETTEEECCSS-CCSSCCS-CCCTTCCEEECCSS-CCCEECTTT-----TTTCTTCCEEECCSSC-CCEECG----GGSTT
T ss_pred             cCCEEECCCC-CccccCC-CCCCCCeEEECCCC-cCCccCHhH-----hhCCCCCcEEECCCCc-cCccCH----hHhhC
Confidence            4666666653 4555554 11356666666666 444444322     2345666666666532 333322    33445


Q ss_pred             CCCcceEeeccCcccccccCCC-CCCccEEEeccCcc--cc-ccccCCCCcceEEEcCcccee---EecccccCCCCcEE
Q 043667          112 FPKLRELHILRCSKLQGTFPEH-LPALEMLVIEACKE--LS-VSVSSLPALCKLKIGGCKKVV---WRSATDHLGSQNSV  184 (387)
Q Consensus       112 ~~~L~~L~l~~~~~l~~~~~~~-~~~L~~L~l~~~~~--l~-~~~~~~~~L~~L~i~~~~~~~---~~~~~~~~~~L~~L  184 (387)
                      +++|++|+++++ .+. .+|.. +++|+.|+++++..  +. ..+..+++|+.|+++++....   .+..+..+ +|++|
T Consensus       101 l~~L~~L~L~~n-~l~-~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L  177 (332)
T 2ft3_A          101 LRKLQKLYISKN-HLV-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL  177 (332)
T ss_dssp             CTTCCEEECCSS-CCC-SCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCC
T ss_pred             cCCCCEEECCCC-cCC-ccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEE
Confidence            667777777665 333 34332 35666776666542  11 235667777777777654321   12222333 66777


Q ss_pred             eccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccC
Q 043667          185 VCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSC  264 (387)
Q Consensus       185 ~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~  264 (387)
                      +++++. +..++...   .++|++  +.++++. +..++...+..+++|++|+++++ .+..+++.    .+..+    +
T Consensus       178 ~l~~n~-l~~l~~~~---~~~L~~--L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~----~~~~l----~  241 (332)
T 2ft3_A          178 RISEAK-LTGIPKDL---PETLNE--LHLDHNK-IQAIELEDLLRYSKLYRLGLGHN-QIRMIENG----SLSFL----P  241 (332)
T ss_dssp             BCCSSB-CSSCCSSS---CSSCSC--CBCCSSC-CCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTT----GGGGC----T
T ss_pred             ECcCCC-CCccCccc---cCCCCE--EECCCCc-CCccCHHHhcCCCCCCEEECCCC-cCCcCChh----HhhCC----C
Confidence            766543 23333221   144555  5555543 33333333556677777777764 44444332    24444    6


Q ss_pred             CccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcC--------CCceEEEeccCCCC--CccccccccC
Q 043667          265 RLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALP--------SKLKKIEIRKCDAL--KSLPEAWMCD  334 (387)
Q Consensus       265 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~--------~~L~~L~l~~c~~l--~~l~~~~~~~  334 (387)
                      +|++|+++++ .++.+|..+..+++|+.|++++ +.++.++...+.        ++|+.|++.+++..  ...+..+..+
T Consensus       242 ~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l  319 (332)
T 2ft3_A          242 TLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV  319 (332)
T ss_dssp             TCCEEECCSS-CCCBCCTTGGGCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTB
T ss_pred             CCCEEECCCC-cCeecChhhhcCccCCEEECCC-CCCCccChhHccccccccccccccceEeecCcccccccCccccccc
Confidence            7777777764 4666666666777777777776 456665543321        34555555554421  1122233334


Q ss_pred             CCCCcceEecccC
Q 043667          335 TNSSLETLKIERC  347 (387)
Q Consensus       335 ~~~~L~~L~l~~c  347 (387)
                      .+  |+.++++++
T Consensus       320 ~~--L~~l~l~~n  330 (332)
T 2ft3_A          320 TD--RLAIQFGNY  330 (332)
T ss_dssp             CC--STTEEC---
T ss_pred             ch--hhhhhcccc
Confidence            44  555555543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.81  E-value=1.6e-18  Score=157.82  Aligned_cols=228  Identities=21%  Similarity=0.224  Sum_probs=135.8

Q ss_pred             CCCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC-cCCcCCCcEEEecCCCCceEeCccccCCCcccCC
Q 043667            5 HKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPF   83 (387)
Q Consensus         5 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~   83 (387)
                      ..++++|+++++....+|..++.  +++|++|++++| .+..+|. ++.+++|++|+++++ .+..++..      +..+
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~--l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~------l~~l  149 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFR--LSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARN-PLRALPAS------IASL  149 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGG--GTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESC-CCCCCCGG------GGGC
T ss_pred             ccceeEEEccCCCchhcChhhhh--CCCCCEEECCCC-CccchhHHHhccCCCCEEECCCC-ccccCcHH------HhcC
Confidence            36778888888887778877776  788888888775 5556765 777888888888877 45555443      2345


Q ss_pred             CCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCCCCCccEEEeccCc--cccccccCCCCcceE
Q 043667           84 PRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACK--ELSVSVSSLPALCKL  161 (387)
Q Consensus        84 ~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~--~l~~~~~~~~~L~~L  161 (387)
                      ++|++|+++++........     .      +....+.+      . ...+++|+.|+++++.  .++..+..+++|++|
T Consensus       150 ~~L~~L~L~~n~~~~~~p~-----~------~~~~~~~~------~-~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L  211 (328)
T 4fcg_A          150 NRLRELSIRACPELTELPE-----P------LASTDASG------E-HQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL  211 (328)
T ss_dssp             TTCCEEEEEEETTCCCCCS-----C------SEEEC-CC------C-EEESTTCCEEEEEEECCCCCCGGGGGCTTCCEE
T ss_pred             cCCCEEECCCCCCccccCh-----h------Hhhccchh------h-hccCCCCCEEECcCCCcCcchHhhcCCCCCCEE
Confidence            5566666555443322211     0      00000000      0 0013344444443332  122334445555555


Q ss_pred             EEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCC
Q 043667          162 KIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWC  241 (387)
Q Consensus       162 ~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  241 (387)
                      +++++....++..+..+++|++                           +.++++.....+|.. ++.+++|++|++++|
T Consensus       212 ~L~~N~l~~l~~~l~~l~~L~~---------------------------L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n  263 (328)
T 4fcg_A          212 KIRNSPLSALGPAIHHLPKLEE---------------------------LDLRGCTALRNYPPI-FGGRAPLKRLILKDC  263 (328)
T ss_dssp             EEESSCCCCCCGGGGGCTTCCE---------------------------EECTTCTTCCBCCCC-TTCCCCCCEEECTTC
T ss_pred             EccCCCCCcCchhhccCCCCCE---------------------------EECcCCcchhhhHHH-hcCCCCCCEEECCCC
Confidence            5555443333333334444444                           555554444444544 567788888888888


Q ss_pred             CCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecC
Q 043667          242 PKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYD  297 (387)
Q Consensus       242 ~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~  297 (387)
                      ...+.++.     .+..+    ++|++|++++|+..+.+|..+..+++|+.+++..
T Consensus       264 ~~~~~~p~-----~~~~l----~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          264 SNLLTLPL-----DIHRL----TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP  310 (328)
T ss_dssp             TTCCBCCT-----TGGGC----TTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred             Cchhhcch-----hhhcC----CCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence            77777665     35555    8888888888888888888888888888888864

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.79  E-value=3.7e-17  Score=160.39  Aligned_cols=255  Identities=22%  Similarity=0.197  Sum_probs=149.2

Q ss_pred             CCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCC
Q 043667            6 KNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPR   85 (387)
Q Consensus         6 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~   85 (387)
                      .++++|+++++....+|..+.    ++|++|++++| .++.+|.  .+++|++|+++++ .++.++.         .+++
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l~----~~L~~L~L~~N-~l~~lp~--~l~~L~~L~Ls~N-~l~~lp~---------~l~~  102 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCLP----AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGN-QLTSLPV---------LPPG  102 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCCC----TTCSEEEECSC-CCSCCCC--CCTTCCEEEECSC-CCSCCCC---------CCTT
T ss_pred             CCCcEEEecCCCcCccChhhC----CCCcEEEecCC-CCCCCCC--cCCCCCEEEcCCC-cCCcCCC---------CCCC
Confidence            368899999999888887653    68999999986 6788887  6889999999988 5665553         3688


Q ss_pred             cceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCCCCCccEEEeccCccccccccCCCCcceEEEcC
Q 043667           86 LETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIGG  165 (387)
Q Consensus        86 L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~i~~  165 (387)
                      |++|+++++. +....      .  .+++|+.|+++++ .++ .+|..+++|+.|+++++..-. .-...++|+.|++.+
T Consensus       103 L~~L~Ls~N~-l~~l~------~--~l~~L~~L~L~~N-~l~-~lp~~l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~  170 (622)
T 3g06_A          103 LLELSIFSNP-LTHLP------A--LPSGLCKLWIFGN-QLT-SLPVLPPGLQELSVSDNQLAS-LPALPSELCKLWAYN  170 (622)
T ss_dssp             CCEEEECSCC-CCCCC------C--CCTTCCEEECCSS-CCS-CCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCS
T ss_pred             CCEEECcCCc-CCCCC------C--CCCCcCEEECCCC-CCC-cCCCCCCCCCEEECcCCcCCC-cCCccCCCCEEECCC
Confidence            8888887642 32221      1  3677888888776 444 466666777777777664221 111234566666655


Q ss_pred             ccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcc
Q 043667          166 CKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQ  245 (387)
Q Consensus       166 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~  245 (387)
                      +....++   ..+++|+.|+++++.                            +..+|.    .+++|+.|+++++ .+.
T Consensus       171 N~l~~l~---~~~~~L~~L~Ls~N~----------------------------l~~l~~----~~~~L~~L~L~~N-~l~  214 (622)
T 3g06_A          171 NQLTSLP---MLPSGLQELSVSDNQ----------------------------LASLPT----LPSELYKLWAYNN-RLT  214 (622)
T ss_dssp             SCCSCCC---CCCTTCCEEECCSSC----------------------------CSCCCC----CCTTCCEEECCSS-CCS
T ss_pred             CCCCCCc---ccCCCCcEEECCCCC----------------------------CCCCCC----ccchhhEEECcCC-ccc
Confidence            4333222   234555555555432                            222222    1345555555553 333


Q ss_pred             cchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCCC
Q 043667          246 SLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALK  325 (387)
Q Consensus       246 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~  325 (387)
                      .++..            +++|++|++++| .++.+|   ..+++|+.|++++ +.++.++.  .+++|+.|++++| .++
T Consensus       215 ~l~~~------------~~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~-N~L~~lp~--~~~~L~~L~Ls~N-~L~  274 (622)
T 3g06_A          215 SLPAL------------PSGLKELIVSGN-RLTSLP---VLPSELKELMVSG-NRLTSLPM--LPSGLLSLSVYRN-QLT  274 (622)
T ss_dssp             SCCCC------------CTTCCEEECCSS-CCSCCC---CCCTTCCEEECCS-SCCSCCCC--CCTTCCEEECCSS-CCC
T ss_pred             ccCCC------------CCCCCEEEccCC-ccCcCC---CCCCcCcEEECCC-CCCCcCCc--ccccCcEEeCCCC-CCC
Confidence            33321            155566666553 344444   2345566666655 35555554  3355666666553 355


Q ss_pred             ccccccccCCCCCcceEecccC
Q 043667          326 SLPEAWMCDTNSSLETLKIERC  347 (387)
Q Consensus       326 ~l~~~~~~~~~~~L~~L~l~~c  347 (387)
                      .+|..+..+++  |+.|+++++
T Consensus       275 ~lp~~l~~l~~--L~~L~L~~N  294 (622)
T 3g06_A          275 RLPESLIHLSS--ETTVNLEGN  294 (622)
T ss_dssp             SCCGGGGGSCT--TCEEECCSC
T ss_pred             cCCHHHhhccc--cCEEEecCC
Confidence            55555555555  666666654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.78  E-value=4.2e-18  Score=155.10  Aligned_cols=224  Identities=23%  Similarity=0.367  Sum_probs=123.4

Q ss_pred             CCCcceEeeccCcccccccCCC---CCCccEEEeccCc--cccccccCCCCcceEEEcCccceeEecccccCCCCcEEec
Q 043667          112 FPKLRELHILRCSKLQGTFPEH---LPALEMLVIEACK--ELSVSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVC  186 (387)
Q Consensus       112 ~~~L~~L~l~~~~~l~~~~~~~---~~~L~~L~l~~~~--~l~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l  186 (387)
                      .++++.|+++++ .+. .+|..   +++|+.|+++++.  .++..++.+++|++|+++++....++..+..+++|++|++
T Consensus        80 ~~~l~~L~L~~n-~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           80 QPGRVALELRSV-PLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI  157 (328)
T ss_dssp             STTCCEEEEESS-CCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred             ccceeEEEccCC-Cch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence            356666666654 333 34432   4555555555543  2223344555555555555443334444445555555555


Q ss_pred             cCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCc
Q 043667          187 RDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRL  266 (387)
Q Consensus       187 ~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L  266 (387)
                      ++|.....++...    ..     ..         ++ +.++.+++|++|+++++ .+..++.     .+..+    ++|
T Consensus       158 ~~n~~~~~~p~~~----~~-----~~---------~~-~~~~~l~~L~~L~L~~n-~l~~lp~-----~l~~l----~~L  208 (328)
T 4fcg_A          158 RACPELTELPEPL----AS-----TD---------AS-GEHQGLVNLQSLRLEWT-GIRSLPA-----SIANL----QNL  208 (328)
T ss_dssp             EEETTCCCCCSCS----EE-----EC----------C-CCEEESTTCCEEEEEEE-CCCCCCG-----GGGGC----TTC
T ss_pred             CCCCCccccChhH----hh-----cc---------ch-hhhccCCCCCEEECcCC-CcCcchH-----hhcCC----CCC
Confidence            5544333332220    00     00         00 01234667777777764 4444443     24444    677


Q ss_pred             cEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCC-cCCCceEEEeccCCCCCccccccccCCCCCcceEecc
Q 043667          267 EYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVA-LPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIE  345 (387)
Q Consensus       267 ~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~  345 (387)
                      ++|++++| .++.++..+..+++|+.|++++|.....++... -.++|++|++++|+..+.+|..+..+++  |++|+++
T Consensus       209 ~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~--L~~L~L~  285 (328)
T 4fcg_A          209 KSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ--LEKLDLR  285 (328)
T ss_dssp             CEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTT--CCEEECT
T ss_pred             CEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCC--CCEEeCC
Confidence            77777764 355666666677777777777766555555321 1267777777777766777766666666  7777777


Q ss_pred             cCcccccccCC-CCCCCccEEeecC
Q 043667          346 RCRSLTYIAGV-QLPPSLKRLDIWN  369 (387)
Q Consensus       346 ~c~~l~~~~~~-~~~~~L~~L~l~~  369 (387)
                      +|+.++.+|.. ..+++|+.+++..
T Consensus       286 ~n~~~~~iP~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          286 GCVNLSRLPSLIAQLPANCIILVPP  310 (328)
T ss_dssp             TCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred             CCCchhhccHHHhhccCceEEeCCH
Confidence            77666666665 5556667766664

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.78  E-value=2.8e-21  Score=190.47  Aligned_cols=353  Identities=14%  Similarity=0.074  Sum_probs=169.0

Q ss_pred             CCCCCcEEEEcCcCCC----CCC-Cc-------cC--CccCCCccEEEeecCCCCCCCC--CcC-CcCCCcEEEecCCCC
Q 043667            4 PHKNLEQFCISGYRGA----KFP-TW-------FG--DSSFSNLVTLKFEYCGMCPTLP--SVG-QLPSLKHLAVCGMTS   66 (387)
Q Consensus         4 ~~~~L~~L~l~~~~~~----~~p-~~-------~~--~~~l~~L~~L~l~~c~~~~~l~--~~~-~l~~L~~L~l~~~~~   66 (387)
                      .+++|++|+++++...    -.| .|       +.  ...+++|++|++++|. +....  .+. .+++|++|++.+|..
T Consensus        64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~  142 (594)
T 2p1m_B           64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEG  142 (594)
T ss_dssp             HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred             hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence            4678888888876522    112 22       11  0137788888888863 33211  233 578888888888754


Q ss_pred             ceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCc-cccc----ccCCCCCCccEEE
Q 043667           67 VKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCS-KLQG----TFPEHLPALEMLV  141 (387)
Q Consensus        67 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~-~l~~----~~~~~~~~L~~L~  141 (387)
                      +........    ...+++|++|++.++. +.+............+++|+.|+++++. .+..    .+...+++|+.|+
T Consensus       143 ~~~~~l~~~----~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~  217 (594)
T 2p1m_B          143 FSTDGLAAI----AATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLK  217 (594)
T ss_dssp             EEHHHHHHH----HHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEE
T ss_pred             CCHHHHHHH----HHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEe
Confidence            433111100    1246788888887765 2222110000111146677777777664 1110    1112357777777


Q ss_pred             eccCcccc---ccccCCCCcceEEEcCcc-------------------------------ceeEecccccCCCCcEEecc
Q 043667          142 IEACKELS---VSVSSLPALCKLKIGGCK-------------------------------KVVWRSATDHLGSQNSVVCR  187 (387)
Q Consensus       142 l~~~~~l~---~~~~~~~~L~~L~i~~~~-------------------------------~~~~~~~~~~~~~L~~L~l~  187 (387)
                      +++|..+.   ..+..+++|++|.+..+.                               ...++.....+++|++|+++
T Consensus       218 L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~  297 (594)
T 2p1m_B          218 LNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLS  297 (594)
T ss_dssp             CCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECT
T ss_pred             cCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEcc
Confidence            77663221   223344455555433221                               00011112235666777766


Q ss_pred             CCCCccccc-CCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecC--------CCCcccchhhHHHH----
Q 043667          188 DTSNQVFLA-GPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDW--------CPKLQSLVAEEEKD----  254 (387)
Q Consensus       188 ~~~~l~~~~-~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~--------~~~l~~~~~~~~~~----  254 (387)
                      +|. +.... ......+++|++  +.+.++.....++ .+...+++|++|++.+        +..+.......+..    
T Consensus       298 ~~~-l~~~~l~~~~~~~~~L~~--L~l~~~~~~~~l~-~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~  373 (594)
T 2p1m_B          298 YAT-VQSYDLVKLLCQCPKLQR--LWVLDYIEDAGLE-VLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPK  373 (594)
T ss_dssp             TCC-CCHHHHHHHHTTCTTCCE--EEEEGGGHHHHHH-HHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTT
T ss_pred             CCC-CCHHHHHHHHhcCCCcCE--EeCcCccCHHHHH-HHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchh
Confidence            665 22110 000234455555  5555541101111 1122345555555522        12221110000000    


Q ss_pred             --------------HHhhhhhccCCccEEEec-----cCCCCCCccc------ccCCCCCccEEEecCCCCceecCCCC-
Q 043667          255 --------------QQQQLCELSCRLEYLRLR-----YCKGLVKLPQ------SSLSLSSLREIDIYDCSSLVSFPEVA-  308 (387)
Q Consensus       255 --------------~~~~l~~~~~~L~~L~l~-----~c~~l~~~~~------~~~~~~~L~~L~l~~c~~l~~~~~~~-  308 (387)
                                    .+..+...+++|++|++.     +|..++..+.      .+..+++|+.|++++  .++...... 
T Consensus       374 L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l  451 (594)
T 2p1m_B          374 LESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYI  451 (594)
T ss_dssp             CCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHH
T ss_pred             HHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHH
Confidence                          111111123677777776     4555554332      134566777777754  333221111 


Q ss_pred             --cCCCceEEEeccCCCCCcc-cccc-ccCCCCCcceEecccCcccccccCC---CCCCCccEEeecCCcc
Q 043667          309 --LPSKLKKIEIRKCDALKSL-PEAW-MCDTNSSLETLKIERCRSLTYIAGV---QLPPSLKRLDIWNCDN  372 (387)
Q Consensus       309 --~~~~L~~L~l~~c~~l~~l-~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~C~~  372 (387)
                        ..++|++|++++|. +.+. ...+ ..+++  |++|++++|+. ++....   ..+++|++|++++|+.
T Consensus       452 ~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~--L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          452 GTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDS--LRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHCTTCCEEEEESCC-SSHHHHHHHHHHCTT--CCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             HHhchhccEeeccCCC-CcHHHHHHHHhcCCC--cCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence              13678888887765 4321 1111 33566  99999998854 432221   3457899999999875

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.76  E-value=1.8e-20  Score=184.68  Aligned_cols=108  Identities=19%  Similarity=0.162  Sum_probs=64.2

Q ss_pred             cCCccEEEecc---CCCCCCccc------ccCCCCCccEEEecCCCC-ceecCCC---CcCCCceEEEeccCCCCCc--c
Q 043667          263 SCRLEYLRLRY---CKGLVKLPQ------SSLSLSSLREIDIYDCSS-LVSFPEV---ALPSKLKKIEIRKCDALKS--L  327 (387)
Q Consensus       263 ~~~L~~L~l~~---c~~l~~~~~------~~~~~~~L~~L~l~~c~~-l~~~~~~---~~~~~L~~L~l~~c~~l~~--l  327 (387)
                      +++|++|++..   |+.++..|.      .+..+++|+.|++++|.+ ++.....   ...++|++|++++|. +.+  +
T Consensus       402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~  480 (592)
T 3ogk_B          402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGL  480 (592)
T ss_dssp             CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHH
T ss_pred             CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHH
Confidence            36777777763   445554321      244577778888766543 2211100   113678888888765 543  3


Q ss_pred             ccccccCCCCCcceEecccCcccccc--cCC-CCCCCccEEeecCCccccc
Q 043667          328 PEAWMCDTNSSLETLKIERCRSLTYI--AGV-QLPPSLKRLDIWNCDNIRT  375 (387)
Q Consensus       328 ~~~~~~~~~~~L~~L~l~~c~~l~~~--~~~-~~~~~L~~L~l~~C~~l~~  375 (387)
                      +..+..+++  |++|++++|+ +++.  +.. ..+++|++|++++|+ ++.
T Consensus       481 ~~~~~~~~~--L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~  527 (592)
T 3ogk_B          481 MEFSRGCPN--LQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM  527 (592)
T ss_dssp             HHHHTCCTT--CCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred             HHHHhcCcc--cCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence            333344566  9999999986 5532  211 346789999999987 554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.75  E-value=9.6e-17  Score=146.34  Aligned_cols=278  Identities=11%  Similarity=0.098  Sum_probs=197.9

Q ss_pred             CCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccCC
Q 043667            6 KNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPF   83 (387)
Q Consensus         6 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~   83 (387)
                      .+++.++++++....+|..+    .+++++|+++++ .++.++.  ++.+++|++|+++++ .+..+....     +..+
T Consensus        31 c~l~~l~~~~~~l~~lp~~~----~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-----~~~l   99 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKDL----PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINN-KISKISPGA-----FAPL   99 (330)
T ss_dssp             EETTEEECTTSCCCSCCCSC----CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTT-----TTTC
T ss_pred             CCCeEEEecCCCccccCccC----CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCC-cCCeeCHHH-----hcCC
Confidence            47999999999988888765    368999999996 6777774  899999999999998 666664332     3568


Q ss_pred             CCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccC---CCCCCccEEEeccCccc-----cccccCC
Q 043667           84 PRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFP---EHLPALEMLVIEACKEL-----SVSVSSL  155 (387)
Q Consensus        84 ~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~---~~~~~L~~L~l~~~~~l-----~~~~~~~  155 (387)
                      ++|++|+++++. +....     ..  .+++|++|+++++ .+.+..+   ..+++|+.|+++++..-     ...+..+
T Consensus       100 ~~L~~L~Ls~n~-l~~l~-----~~--~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l  170 (330)
T 1xku_A          100 VKLERLYLSKNQ-LKELP-----EK--MPKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM  170 (330)
T ss_dssp             TTCCEEECCSSC-CSBCC-----SS--CCTTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC
T ss_pred             CCCCEEECCCCc-CCccC-----hh--hcccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCccCcChhhccCC
Confidence            999999999753 33332     12  2479999999987 3332222   35889999999987632     2457788


Q ss_pred             CCcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccE
Q 043667          156 PALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKK  235 (387)
Q Consensus       156 ~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~  235 (387)
                      ++|++|+++++....++...  .++|++|+++++. +..........+++|++  +.++++. +..++...++.+++|++
T Consensus       171 ~~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~--L~Ls~n~-l~~~~~~~~~~l~~L~~  244 (330)
T 1xku_A          171 KKLSYIRIADTNITTIPQGL--PPSLTELHLDGNK-ITKVDAASLKGLNNLAK--LGLSFNS-ISAVDNGSLANTPHLRE  244 (330)
T ss_dssp             TTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSC-CCEECTGGGTTCTTCCE--EECCSSC-CCEECTTTGGGSTTCCE
T ss_pred             CCcCEEECCCCccccCCccc--cccCCEEECCCCc-CCccCHHHhcCCCCCCE--EECCCCc-CceeChhhccCCCCCCE
Confidence            99999999988655544433  3899999999875 33333333567788888  9998765 45555545778999999


Q ss_pred             EEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccc-cC------CCCCccEEEecCCCCcee--cCC
Q 043667          236 LTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQS-SL------SLSSLREIDIYDCSSLVS--FPE  306 (387)
Q Consensus       236 L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~-~~------~~~~L~~L~l~~c~~l~~--~~~  306 (387)
                      |+++++ .+..++.     ++..+    ++|++|+++++. ++.++.. +.      ..+.++.++++++ .++.  ++.
T Consensus       245 L~L~~N-~l~~lp~-----~l~~l----~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N-~~~~~~i~~  312 (330)
T 1xku_A          245 LHLNNN-KLVKVPG-----GLADH----KYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSN-PVQYWEIQP  312 (330)
T ss_dssp             EECCSS-CCSSCCT-----TTTTC----SSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSS-SSCGGGSCG
T ss_pred             EECCCC-cCccCCh-----hhccC----CCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecC-cccccccCc
Confidence            999996 5566654     35555    999999999864 7766543 21      3478899999984 4443  333


Q ss_pred             CCcC--CCceEEEeccC
Q 043667          307 VALP--SKLKKIEIRKC  321 (387)
Q Consensus       307 ~~~~--~~L~~L~l~~c  321 (387)
                      ..+.  ++++.++++++
T Consensus       313 ~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          313 STFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             GGGTTCCCGGGEEC---
T ss_pred             cccccccceeEEEeccc
Confidence            3333  78888988764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.73  E-value=6.6e-17  Score=147.56  Aligned_cols=277  Identities=15%  Similarity=0.117  Sum_probs=196.9

Q ss_pred             CCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccCC
Q 043667            6 KNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPF   83 (387)
Q Consensus         6 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~   83 (387)
                      .+++.++++++....+|..+    .++|++|+++++ .++.++.  ++.+++|++|++.++ .+..+....     +..+
T Consensus        33 c~l~~l~~~~~~l~~ip~~~----~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-----~~~l  101 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEI----SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNN-KISKIHEKA-----FSPL  101 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCC----CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECGGG-----STTC
T ss_pred             ccCCEEECCCCCccccCCCC----CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCC-ccCccCHhH-----hhCc
Confidence            37999999999999998765    468999999996 6777754  899999999999999 677775443     3568


Q ss_pred             CCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccC----CCCCCccEEEeccCccc-----cccccC
Q 043667           84 PRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFP----EHLPALEMLVIEACKEL-----SVSVSS  154 (387)
Q Consensus        84 ~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~----~~~~~L~~L~l~~~~~l-----~~~~~~  154 (387)
                      ++|++|+++++. +....     ..+  +++|++|+++++ .+. .++    ..+++|+.|+++++..-     ...+..
T Consensus       102 ~~L~~L~L~~n~-l~~l~-----~~~--~~~L~~L~l~~n-~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  171 (332)
T 2ft3_A          102 RKLQKLYISKNH-LVEIP-----PNL--PSSLVELRIHDN-RIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG  171 (332)
T ss_dssp             TTCCEEECCSSC-CCSCC-----SSC--CTTCCEEECCSS-CCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCS
T ss_pred             CCCCEEECCCCc-CCccC-----ccc--cccCCEEECCCC-ccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccC
Confidence            999999999753 33332     122  489999999987 343 233    34789999999987642     234455


Q ss_pred             CCCcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCcc
Q 043667          155 LPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLK  234 (387)
Q Consensus       155 ~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~  234 (387)
                      + +|+.|+++++....++...  .++|++|+++++. +...+......+++|++  +.++++. +..++...++.+++|+
T Consensus       172 l-~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~--L~L~~N~-l~~~~~~~~~~l~~L~  244 (332)
T 2ft3_A          172 L-KLNYLRISEAKLTGIPKDL--PETLNELHLDHNK-IQAIELEDLLRYSKLYR--LGLGHNQ-IRMIENGSLSFLPTLR  244 (332)
T ss_dssp             C-CCSCCBCCSSBCSSCCSSS--CSSCSCCBCCSSC-CCCCCTTSSTTCTTCSC--CBCCSSC-CCCCCTTGGGGCTTCC
T ss_pred             C-ccCEEECcCCCCCccCccc--cCCCCEEECCCCc-CCccCHHHhcCCCCCCE--EECCCCc-CCcCChhHhhCCCCCC
Confidence            5 8999999987655544332  3799999999864 34444333567788888  8888764 5555555578899999


Q ss_pred             EEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccc-cC------CCCCccEEEecCCCCce--ecC
Q 043667          235 KLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQS-SL------SLSSLREIDIYDCSSLV--SFP  305 (387)
Q Consensus       235 ~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~-~~------~~~~L~~L~l~~c~~l~--~~~  305 (387)
                      +|+++++ .+..++.     ++..+    ++|++|+++++ .++.++.. +.      ..++|+.|++.+++ +.  .+.
T Consensus       245 ~L~L~~N-~l~~lp~-----~l~~l----~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~~~~~~~  312 (332)
T 2ft3_A          245 ELHLDNN-KLSRVPA-----GLPDL----KLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP-VPYWEVQ  312 (332)
T ss_dssp             EEECCSS-CCCBCCT-----TGGGC----TTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS-SCGGGSC
T ss_pred             EEECCCC-cCeecCh-----hhhcC----ccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc-ccccccC
Confidence            9999985 5666665     35555    99999999985 47766542 22      25789999999854 44  333


Q ss_pred             CCCcC--CCceEEEeccCC
Q 043667          306 EVALP--SKLKKIEIRKCD  322 (387)
Q Consensus       306 ~~~~~--~~L~~L~l~~c~  322 (387)
                      ...+.  ++|+.++++++.
T Consensus       313 ~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          313 PATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             GGGGTTBCCSTTEEC----
T ss_pred             cccccccchhhhhhccccc
Confidence            33343  789999988764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.73  E-value=2.3e-17  Score=149.29  Aligned_cols=241  Identities=17%  Similarity=0.159  Sum_probs=115.6

Q ss_pred             CCccEEEeecCCCCC---CCCC-cCCcCCCcEEEecCCCCce-EeCccccCCCcccCCCCcceeeccccCCccccccCcC
Q 043667           31 SNLVTLKFEYCGMCP---TLPS-VGQLPSLKHLAVCGMTSVK-RLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRS  105 (387)
Q Consensus        31 ~~L~~L~l~~c~~~~---~l~~-~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  105 (387)
                      .+++.|+++++ .+.   .+|. ++++++|++|+++++..+. .++..      +..+++|++|+++++. +....+   
T Consensus        50 ~~l~~L~L~~~-~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~------l~~l~~L~~L~Ls~n~-l~~~~p---  118 (313)
T 1ogq_A           50 YRVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA------IAKLTQLHYLYITHTN-VSGAIP---  118 (313)
T ss_dssp             CCEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG------GGGCTTCSEEEEEEEC-CEEECC---
T ss_pred             ceEEEEECCCC-CccCCcccChhHhCCCCCCeeeCCCCCcccccCChh------HhcCCCCCEEECcCCe-eCCcCC---
Confidence            34555555554 222   2332 5555555555555321232 22222      2345555555555432 211111   


Q ss_pred             CCCccCCCCcceEeeccCcccccccCC---CCCCccEEEeccCcc---ccccccCCC-CcceEEEcCcccee-Eeccccc
Q 043667          106 GQGVEGFPKLRELHILRCSKLQGTFPE---HLPALEMLVIEACKE---LSVSVSSLP-ALCKLKIGGCKKVV-WRSATDH  177 (387)
Q Consensus       106 ~~~i~~~~~L~~L~l~~~~~l~~~~~~---~~~~L~~L~l~~~~~---l~~~~~~~~-~L~~L~i~~~~~~~-~~~~~~~  177 (387)
                       ..+..+++|++|+++++ .+.+.+|.   .+++|+.|+++++..   ++..+..++ +|+.|+++++.... .+..+..
T Consensus       119 -~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~  196 (313)
T 1ogq_A          119 -DFLSQIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN  196 (313)
T ss_dssp             -GGGGGCTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred             -HHHhCCCCCCEEeCCCC-ccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC
Confidence             22334566666666655 23323332   244555555554431   223444554 66666666554332 2333333


Q ss_pred             CCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHh
Q 043667          178 LGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQ  257 (387)
Q Consensus       178 ~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~  257 (387)
                      ++ |++|+++++.                            ++..+...++.+++|+.|+++++.-...++.      +.
T Consensus       197 l~-L~~L~Ls~N~----------------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------~~  241 (313)
T 1ogq_A          197 LN-LAFVDLSRNM----------------------------LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK------VG  241 (313)
T ss_dssp             CC-CSEEECCSSE----------------------------EEECCGGGCCTTSCCSEEECCSSEECCBGGG------CC
T ss_pred             Cc-ccEEECcCCc----------------------------ccCcCCHHHhcCCCCCEEECCCCceeeecCc------cc
Confidence            33 5555555431                            1111222245566777777776432222221      22


Q ss_pred             hhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCce-ecCCCCcCCCceEEEeccCCCC
Q 043667          258 QLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLV-SFPEVALPSKLKKIEIRKCDAL  324 (387)
Q Consensus       258 ~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~L~~L~l~~c~~l  324 (387)
                      .+    ++|++|+++++.-...+|..+..+++|+.|+++++ .++ .+|.....++|+.+++.+++.+
T Consensus       242 ~l----~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~ip~~~~l~~L~~l~l~~N~~l  304 (313)
T 1ogq_A          242 LS----KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN-NLCGEIPQGGNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             CC----TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS-EEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred             cc----CCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC-cccccCCCCccccccChHHhcCCCCc
Confidence            22    67777777765422256666667777777777764 343 5554433366666666665543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.73  E-value=6.3e-16  Score=151.65  Aligned_cols=256  Identities=21%  Similarity=0.167  Sum_probs=170.5

Q ss_pred             CCccEEEeecCCCCCCCCC-cCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCc
Q 043667           31 SNLVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGV  109 (387)
Q Consensus        31 ~~L~~L~l~~c~~~~~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i  109 (387)
                      .+++.|+++++ .++.+|. +.  ++|++|++.++ .++.++.         .+++|++|+++++. ++...      . 
T Consensus        40 ~~l~~L~ls~n-~L~~lp~~l~--~~L~~L~L~~N-~l~~lp~---------~l~~L~~L~Ls~N~-l~~lp------~-   98 (622)
T 3g06_A           40 NGNAVLNVGES-GLTTLPDCLP--AHITTLVIPDN-NLTSLPA---------LPPELRTLEVSGNQ-LTSLP------V-   98 (622)
T ss_dssp             HCCCEEECCSS-CCSCCCSCCC--TTCSEEEECSC-CCSCCCC---------CCTTCCEEEECSCC-CSCCC------C-
T ss_pred             CCCcEEEecCC-CcCccChhhC--CCCcEEEecCC-CCCCCCC---------cCCCCCEEEcCCCc-CCcCC------C-
Confidence            36889999885 6778876 33  78999999888 5665543         25677777777643 22221      1 


Q ss_pred             cCCCCcceEeeccCcccccccCCCCCCccEEEeccCccccccccCCCCcceEEEcCccceeEecccccCCCCcEEeccCC
Q 043667          110 EGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDT  189 (387)
Q Consensus       110 ~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~  189 (387)
                       .+++|+.|+++++ .+. .+|..+++|+.|+++++                     ....++.   .+++|++|+++++
T Consensus        99 -~l~~L~~L~Ls~N-~l~-~l~~~l~~L~~L~L~~N---------------------~l~~lp~---~l~~L~~L~Ls~N  151 (622)
T 3g06_A           99 -LPPGLLELSIFSN-PLT-HLPALPSGLCKLWIFGN---------------------QLTSLPV---LPPGLQELSVSDN  151 (622)
T ss_dssp             -CCTTCCEEEECSC-CCC-CCCCCCTTCCEEECCSS---------------------CCSCCCC---CCTTCCEEECCSS
T ss_pred             -CCCCCCEEECcCC-cCC-CCCCCCCCcCEEECCCC---------------------CCCcCCC---CCCCCCEEECcCC
Confidence             3566666666655 333 34444455555555444                     2222221   1356666666654


Q ss_pred             CCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEE
Q 043667          190 SNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYL  269 (387)
Q Consensus       190 ~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L  269 (387)
                       .+..++    ..+++|+.  +.+.++ .++.+|    ..+++|+.|+++++ .+..++..            +++|+.|
T Consensus       152 -~l~~l~----~~~~~L~~--L~L~~N-~l~~l~----~~~~~L~~L~Ls~N-~l~~l~~~------------~~~L~~L  206 (622)
T 3g06_A          152 -QLASLP----ALPSELCK--LWAYNN-QLTSLP----MLPSGLQELSVSDN-QLASLPTL------------PSELYKL  206 (622)
T ss_dssp             -CCSCCC----CCCTTCCE--EECCSS-CCSCCC----CCCTTCCEEECCSS-CCSCCCCC------------CTTCCEE
T ss_pred             -cCCCcC----CccCCCCE--EECCCC-CCCCCc----ccCCCCcEEECCCC-CCCCCCCc------------cchhhEE
Confidence             222222    22345555  666654 344555    24689999999985 55655432            2899999


Q ss_pred             EeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCCCccccccccCCCCCcceEecccCcc
Q 043667          270 RLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRS  349 (387)
Q Consensus       270 ~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~  349 (387)
                      ++++| .++.++.   .+++|+.|++++ +.++.++  ...++|+.|++++| .++.+|..   +.+  |++|++++| +
T Consensus       207 ~L~~N-~l~~l~~---~~~~L~~L~Ls~-N~L~~lp--~~l~~L~~L~Ls~N-~L~~lp~~---~~~--L~~L~Ls~N-~  272 (622)
T 3g06_A          207 WAYNN-RLTSLPA---LPSGLKELIVSG-NRLTSLP--VLPSELKELMVSGN-RLTSLPML---PSG--LLSLSVYRN-Q  272 (622)
T ss_dssp             ECCSS-CCSSCCC---CCTTCCEEECCS-SCCSCCC--CCCTTCCEEECCSS-CCSCCCCC---CTT--CCEEECCSS-C
T ss_pred             ECcCC-cccccCC---CCCCCCEEEccC-CccCcCC--CCCCcCcEEECCCC-CCCcCCcc---ccc--CcEEeCCCC-C
Confidence            99985 5777775   358899999998 5888887  44589999999986 58888873   566  999999996 7


Q ss_pred             cccccCC-CCCCCccEEeecCCccc
Q 043667          350 LTYIAGV-QLPPSLKRLDIWNCDNI  373 (387)
Q Consensus       350 l~~~~~~-~~~~~L~~L~l~~C~~l  373 (387)
                      ++.+|.. ..+++|+.|++++++--
T Consensus       273 L~~lp~~l~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          273 LTRLPESLIHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             CCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred             CCcCCHHHhhccccCEEEecCCCCC
Confidence            8888866 66799999999997643

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.73  E-value=2.1e-17  Score=149.46  Aligned_cols=228  Identities=15%  Similarity=0.091  Sum_probs=147.9

Q ss_pred             CCCccEEEeccCc----cccccccCCCCcceEEEcCccce-eEecccccCCCCcEEeccCCCCcccccCCCCCCCccccc
Q 043667          134 LPALEMLVIEACK----ELSVSVSSLPALCKLKIGGCKKV-VWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEE  208 (387)
Q Consensus       134 ~~~L~~L~l~~~~----~l~~~~~~~~~L~~L~i~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~  208 (387)
                      +++|+.|+++++.    .++..+..+++|++|+++++... ..+..+..+++|++|+++++.-...++.. ...+++|++
T Consensus        75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~  153 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVG  153 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCE
T ss_pred             CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChH-HhcCCCCCe
Confidence            3445555554311    12234556666666666665544 24445566667777777665322222222 345566666


Q ss_pred             eeEEEcCCCCcccccccccccCC-CccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCC
Q 043667          209 LILSTKEQTYIWKSHDGLLQDIC-SLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSL  287 (387)
Q Consensus       209 l~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~  287 (387)
                        +.+.++.....+|.. ++.++ +|++|+++++.-...++.     .+..+    . |++|+++++.--...+..+..+
T Consensus       154 --L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~~~-----~~~~l----~-L~~L~Ls~N~l~~~~~~~~~~l  220 (313)
T 1ogq_A          154 --ITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIPP-----TFANL----N-LAFVDLSRNMLEGDASVLFGSD  220 (313)
T ss_dssp             --EECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECCG-----GGGGC----C-CSEEECCSSEEEECCGGGCCTT
T ss_pred             --EECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccCCh-----HHhCC----c-ccEEECcCCcccCcCCHHHhcC
Confidence              777666544355655 55666 899999998644334443     34444    4 9999999865333566678899


Q ss_pred             CCccEEEecCCCCce-ecCCCCcCCCceEEEeccCCCCCccccccccCCCCCcceEecccCcccc-cccCCCCCCCccEE
Q 043667          288 SSLREIDIYDCSSLV-SFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLT-YIAGVQLPPSLKRL  365 (387)
Q Consensus       288 ~~L~~L~l~~c~~l~-~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~L~~L  365 (387)
                      ++|+.|+++++ .++ .++.....++|++|+++++.--..+|..+..+++  |++|+++++ +++ .+|....+++|+.+
T Consensus       221 ~~L~~L~L~~N-~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~Ls~N-~l~~~ip~~~~l~~L~~l  296 (313)
T 1ogq_A          221 KNTQKIHLAKN-SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF--LHSLNVSFN-NLCGEIPQGGNLQRFDVS  296 (313)
T ss_dssp             SCCSEEECCSS-EECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTT--CCEEECCSS-EEEEECCCSTTGGGSCGG
T ss_pred             CCCCEEECCCC-ceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcC--CCEEECcCC-cccccCCCCccccccChH
Confidence            99999999985 444 3343334489999999987643478888777888  999999996 555 66665667899999


Q ss_pred             eecCCccccccccc
Q 043667          366 DIWNCDNIRTLTVE  379 (387)
Q Consensus       366 ~l~~C~~l~~l~~~  379 (387)
                      ++++.+.+...|..
T Consensus       297 ~l~~N~~lc~~p~~  310 (313)
T 1ogq_A          297 AYANNKCLCGSPLP  310 (313)
T ss_dssp             GTCSSSEEESTTSS
T ss_pred             HhcCCCCccCCCCC
Confidence            99998877766543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.72  E-value=9.1e-16  Score=145.50  Aligned_cols=233  Identities=18%  Similarity=0.194  Sum_probs=102.1

Q ss_pred             cEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCccCCC
Q 043667           34 VTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFP  113 (387)
Q Consensus        34 ~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~  113 (387)
                      +.++..+ ..++.+|. +-.++++.|++.++ .++.++...     +..+++|++|++.++. +.....    ..+..++
T Consensus        46 ~~v~c~~-~~l~~iP~-~~~~~l~~L~L~~n-~i~~~~~~~-----~~~l~~L~~L~Ls~n~-i~~i~~----~~~~~l~  112 (440)
T 3zyj_A           46 SKVICVR-KNLREVPD-GISTNTRLLNLHEN-QIQIIKVNS-----FKHLRHLEILQLSRNH-IRTIEI----GAFNGLA  112 (440)
T ss_dssp             CEEECCS-CCCSSCCS-CCCTTCSEEECCSC-CCCEECTTT-----TSSCSSCCEEECCSSC-CCEECG----GGGTTCS
T ss_pred             CEEEeCC-CCcCcCCC-CCCCCCcEEEccCC-cCCeeCHHH-----hhCCCCCCEEECCCCc-CCccCh----hhccCCc
Confidence            3444433 24444543 11245555555555 444444322     2335555555555432 222221    2233455


Q ss_pred             CcceEeeccCcccccccCC----CCCCccEEEeccCccc--c-ccccCCCCcceEEEcCcccee-Ee-cccccCCCCcEE
Q 043667          114 KLRELHILRCSKLQGTFPE----HLPALEMLVIEACKEL--S-VSVSSLPALCKLKIGGCKKVV-WR-SATDHLGSQNSV  184 (387)
Q Consensus       114 ~L~~L~l~~~~~l~~~~~~----~~~~L~~L~l~~~~~l--~-~~~~~~~~L~~L~i~~~~~~~-~~-~~~~~~~~L~~L  184 (387)
                      +|++|+++++ .++ .++.    .+++|+.|+++++..-  . ..+..+++|++|++.++..+. +. ..+..+++|++|
T Consensus       113 ~L~~L~L~~n-~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L  190 (440)
T 3zyj_A          113 NLNTLELFDN-RLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL  190 (440)
T ss_dssp             SCCEEECCSS-CCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred             cCCEEECCCC-cCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence            6666666554 232 1221    2344444444443311  1 235556666666666654444 21 234455666666


Q ss_pred             eccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccC
Q 043667          185 VCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSC  264 (387)
Q Consensus       185 ~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~  264 (387)
                      +++++. +..++.  ...+++|++  |.++++ .+..++...+..+++|++|+++++ .+..+.+.    .+..+    +
T Consensus       191 ~L~~n~-l~~~~~--~~~l~~L~~--L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~----~~~~l----~  255 (440)
T 3zyj_A          191 NLAMCN-LREIPN--LTPLIKLDE--LDLSGN-HLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERN----AFDNL----Q  255 (440)
T ss_dssp             ECTTSC-CSSCCC--CTTCSSCCE--EECTTS-CCCEECTTTTTTCTTCCEEECTTC-CCCEECTT----SSTTC----T
T ss_pred             cCCCCc-Cccccc--cCCCcccCE--EECCCC-ccCccChhhhccCccCCEEECCCC-ceeEEChh----hhcCC----C
Confidence            666542 222222  233444444  555444 233333233444555555555543 33333222    23333    4


Q ss_pred             CccEEEeccCCCCCCcccc-cCCCCCccEEEecC
Q 043667          265 RLEYLRLRYCKGLVKLPQS-SLSLSSLREIDIYD  297 (387)
Q Consensus       265 ~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~  297 (387)
                      +|++|+++++ .++.++.. +..+++|+.|++++
T Consensus       256 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~  288 (440)
T 3zyj_A          256 SLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHH  288 (440)
T ss_dssp             TCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCEEECCCC-CCCccChhHhccccCCCEEEcCC
Confidence            5555555543 24444332 33445555555544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.72  E-value=1.3e-15  Score=144.88  Aligned_cols=141  Identities=16%  Similarity=0.187  Sum_probs=65.5

Q ss_pred             cEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCccCCC
Q 043667           34 VTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFP  113 (387)
Q Consensus        34 ~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~  113 (387)
                      ..++..+ ..++.+|. +-.+++++|++.++ .++.++...     +..+++|++|+++++ .+.....    ..+..++
T Consensus        57 ~~v~c~~-~~l~~iP~-~~~~~l~~L~L~~n-~i~~~~~~~-----~~~l~~L~~L~Ls~n-~i~~~~~----~~~~~l~  123 (452)
T 3zyi_A           57 SKVVCTR-RGLSEVPQ-GIPSNTRYLNLMEN-NIQMIQADT-----FRHLHHLEVLQLGRN-SIRQIEV----GAFNGLA  123 (452)
T ss_dssp             CEEECCS-SCCSSCCS-CCCTTCSEEECCSS-CCCEECTTT-----TTTCTTCCEEECCSS-CCCEECT----TTTTTCT
T ss_pred             cEEEECC-CCcCccCC-CCCCCccEEECcCC-cCceECHHH-----cCCCCCCCEEECCCC-ccCCcCh----hhccCcc
Confidence            4444443 24455553 11245666666666 444443332     234556666666543 2233222    3333456


Q ss_pred             CcceEeeccCcccccccCC----CCCCccEEEeccCcccc---ccccCCCCcceEEEcCccceeE-e-cccccCCCCcEE
Q 043667          114 KLRELHILRCSKLQGTFPE----HLPALEMLVIEACKELS---VSVSSLPALCKLKIGGCKKVVW-R-SATDHLGSQNSV  184 (387)
Q Consensus       114 ~L~~L~l~~~~~l~~~~~~----~~~~L~~L~l~~~~~l~---~~~~~~~~L~~L~i~~~~~~~~-~-~~~~~~~~L~~L  184 (387)
                      +|++|+++++ .+. .++.    .+++|+.|+++++....   ..+..+++|++|+++++..+.. . ..+..+++|++|
T Consensus       124 ~L~~L~L~~n-~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L  201 (452)
T 3zyi_A          124 SLNTLELFDN-WLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL  201 (452)
T ss_dssp             TCCEEECCSS-CCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred             cCCEEECCCC-cCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence            6666666655 232 2221    23445555544433111   2345556666666665444441 1 123445556666


Q ss_pred             eccCC
Q 043667          185 VCRDT  189 (387)
Q Consensus       185 ~l~~~  189 (387)
                      +++++
T Consensus       202 ~L~~n  206 (452)
T 3zyi_A          202 NLGMC  206 (452)
T ss_dssp             ECTTS
T ss_pred             ECCCC
Confidence            55544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.71  E-value=1.1e-15  Score=144.95  Aligned_cols=200  Identities=20%  Similarity=0.231  Sum_probs=100.3

Q ss_pred             ccCCCCcceEEEcCccceeEe-cccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccC
Q 043667          152 VSSLPALCKLKIGGCKKVVWR-SATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDI  230 (387)
Q Consensus       152 ~~~~~~L~~L~i~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~  230 (387)
                      +..+++|++|+++++....+. ..+..+++|++|+++++ .+..++......+++|++  |.++++. +..++...+..+
T Consensus        84 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~--L~L~~N~-i~~~~~~~~~~l  159 (440)
T 3zyj_A           84 FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKE--LWLRNNP-IESIPSYAFNRI  159 (440)
T ss_dssp             TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCE--EECCSCC-CCEECTTTTTTC
T ss_pred             hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCce--eeCCCCc-ccccCHHHhhhC
Confidence            444555555555544333322 23344555555555543 233333322344555555  5555432 334444445556


Q ss_pred             CCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcC
Q 043667          231 CSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALP  310 (387)
Q Consensus       231 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~  310 (387)
                      ++|++|+++++..+..++..    .+..+    ++|++|++++| .++.+|. +..+++|+.|+++++ .++.++...+.
T Consensus       160 ~~L~~L~l~~~~~l~~i~~~----~~~~l----~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~  228 (440)
T 3zyj_A          160 PSLRRLDLGELKRLSYISEG----AFEGL----SNLRYLNLAMC-NLREIPN-LTPLIKLDELDLSGN-HLSAIRPGSFQ  228 (440)
T ss_dssp             TTCCEEECCCCTTCCEECTT----TTTTC----SSCCEEECTTS-CCSSCCC-CTTCSSCCEEECTTS-CCCEECTTTTT
T ss_pred             cccCEeCCCCCCCcceeCcc----hhhcc----cccCeecCCCC-cCccccc-cCCCcccCEEECCCC-ccCccChhhhc
Confidence            66666666665555555443    23333    56666666654 3555553 455566666666653 55555433333


Q ss_pred             --CCceEEEeccCCCCCccc-cccccCCCCCcceEecccCcccccccCC--CCCCCccEEeecCC
Q 043667          311 --SKLKKIEIRKCDALKSLP-EAWMCDTNSSLETLKIERCRSLTYIAGV--QLPPSLKRLDIWNC  370 (387)
Q Consensus       311 --~~L~~L~l~~c~~l~~l~-~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~C  370 (387)
                        ++|++|+++++. ++.++ ..+..+++  |++|+++++ +++.++..  ..+++|++|+++++
T Consensus       229 ~l~~L~~L~L~~n~-l~~~~~~~~~~l~~--L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N  289 (440)
T 3zyj_A          229 GLMHLQKLWMIQSQ-IQVIERNAFDNLQS--LVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHN  289 (440)
T ss_dssp             TCTTCCEEECTTCC-CCEECTTSSTTCTT--CCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSS
T ss_pred             cCccCCEEECCCCc-eeEEChhhhcCCCC--CCEEECCCC-CCCccChhHhccccCCCEEEcCCC
Confidence              566666666533 44443 23333444  666666663 55555543  33456666666553

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.71  E-value=2.8e-16  Score=144.68  Aligned_cols=263  Identities=17%  Similarity=0.157  Sum_probs=123.7

Q ss_pred             CCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCc
Q 043667           30 FSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGV  109 (387)
Q Consensus        30 l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i  109 (387)
                      ++.....+.++ ..++.+|. +-.++|++|+++++ .++.++...     +..+++|++|++.++ .+.....    ..+
T Consensus        30 C~~~~~c~~~~-~~l~~iP~-~~~~~L~~L~l~~n-~i~~~~~~~-----~~~l~~L~~L~L~~n-~l~~~~~----~~~   96 (353)
T 2z80_A           30 CDRNGICKGSS-GSLNSIPS-GLTEAVKSLDLSNN-RITYISNSD-----LQRCVNLQALVLTSN-GINTIEE----DSF   96 (353)
T ss_dssp             ECTTSEEECCS-TTCSSCCT-TCCTTCCEEECTTS-CCCEECTTT-----TTTCTTCCEEECTTS-CCCEECT----TTT
T ss_pred             CCCCeEeeCCC-CCcccccc-cccccCcEEECCCC-cCcccCHHH-----hccCCCCCEEECCCC-ccCccCH----hhc
Confidence            44444555555 35666664 22346777777766 455555432     234566666666653 3333322    334


Q ss_pred             cCCCCcceEeeccCcccccccC----CCCCCccEEEeccCcc--ccc--cccCCCCcceEEEcCccceeEecccccCCCC
Q 043667          110 EGFPKLRELHILRCSKLQGTFP----EHLPALEMLVIEACKE--LSV--SVSSLPALCKLKIGGCKKVVWRSATDHLGSQ  181 (387)
Q Consensus       110 ~~~~~L~~L~l~~~~~l~~~~~----~~~~~L~~L~l~~~~~--l~~--~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L  181 (387)
                      ..+++|++|+++++ .++ .++    ..+++|+.|+++++..  ++.  .+..+++|++|+++++               
T Consensus        97 ~~l~~L~~L~Ls~n-~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n---------------  159 (353)
T 2z80_A           97 SSLGSLEHLDLSYN-YLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM---------------  159 (353)
T ss_dssp             TTCTTCCEEECCSS-CCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEES---------------
T ss_pred             CCCCCCCEEECCCC-cCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCC---------------
Confidence            45666777777665 222 222    1244455555544321  111  2444555555555544               


Q ss_pred             cEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhh
Q 043667          182 NSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCE  261 (387)
Q Consensus       182 ~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~  261 (387)
                              ..+..++......+++|++  +.++++. +..+....++.+++|++|+++++. +..++..    .+..+  
T Consensus       160 --------~~~~~~~~~~~~~l~~L~~--L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~----~~~~~--  221 (353)
T 2z80_A          160 --------DTFTKIQRKDFAGLTFLEE--LEIDASD-LQSYEPKSLKSIQNVSHLILHMKQ-HILLLEI----FVDVT--  221 (353)
T ss_dssp             --------SSCCEECTTTTTTCCEEEE--EEEEETT-CCEECTTTTTTCSEEEEEEEECSC-STTHHHH----HHHHT--
T ss_pred             --------ccccccCHHHccCCCCCCE--EECCCCC-cCccCHHHHhccccCCeecCCCCc-cccchhh----hhhhc--
Confidence                    3233322222334444444  4444433 222222224556666666666643 3433322    12223  


Q ss_pred             ccCCccEEEeccCCCCCCccc-c---cCCCCCccEEEecCCCCcee-----cCCC-CcCCCceEEEeccCCCCCcccccc
Q 043667          262 LSCRLEYLRLRYCKGLVKLPQ-S---SLSLSSLREIDIYDCSSLVS-----FPEV-ALPSKLKKIEIRKCDALKSLPEAW  331 (387)
Q Consensus       262 ~~~~L~~L~l~~c~~l~~~~~-~---~~~~~~L~~L~l~~c~~l~~-----~~~~-~~~~~L~~L~l~~c~~l~~l~~~~  331 (387)
                        ++|++|+++++. ++.++. .   ....+.++.++++++ .+..     ++.. ...++|++|+++++ .++.+|..+
T Consensus       222 --~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~  296 (353)
T 2z80_A          222 --SSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGI  296 (353)
T ss_dssp             --TTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTT
T ss_pred             --ccccEEECCCCc-cccccccccccccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHH
Confidence              666666666643 333221 1   123445556666553 2222     1110 11256666666664 355666542


Q ss_pred             -ccCCCCCcceEecccC
Q 043667          332 -MCDTNSSLETLKIERC  347 (387)
Q Consensus       332 -~~~~~~~L~~L~l~~c  347 (387)
                       ..+++  |++|+++++
T Consensus       297 ~~~l~~--L~~L~L~~N  311 (353)
T 2z80_A          297 FDRLTS--LQKIWLHTN  311 (353)
T ss_dssp             TTTCTT--CCEEECCSS
T ss_pred             HhcCCC--CCEEEeeCC
Confidence             44455  666666664

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.71  E-value=7.9e-19  Score=172.90  Aligned_cols=348  Identities=12%  Similarity=0.049  Sum_probs=198.4

Q ss_pred             CCCCCcEEEEcCcCC----CCCCCccCC-c---------cCCCccEEEeecCCCCCCC--CCcCC-cCC-CcEEEecCCC
Q 043667            4 PHKNLEQFCISGYRG----AKFPTWFGD-S---------SFSNLVTLKFEYCGMCPTL--PSVGQ-LPS-LKHLAVCGMT   65 (387)
Q Consensus         4 ~~~~L~~L~l~~~~~----~~~p~~~~~-~---------~l~~L~~L~l~~c~~~~~l--~~~~~-l~~-L~~L~l~~~~   65 (387)
                      .+++|++|+++++..    ...|...+. .         .+++|++|++++| .+++.  ..++. +++ |++|++.+|.
T Consensus        71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~  149 (592)
T 3ogk_B           71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCS  149 (592)
T ss_dssp             HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCE
T ss_pred             hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCC
Confidence            356788888876432    112222210 0         3778888888876 33321  12344 444 8888888875


Q ss_pred             CceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCccc--c-cccC---CCCCCccE
Q 043667           66 SVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKL--Q-GTFP---EHLPALEM  139 (387)
Q Consensus        66 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l--~-~~~~---~~~~~L~~  139 (387)
                      .+...+...    ....+++|++|++.++.- .+............+++|+.|+++++..-  . ..++   ..+++|+.
T Consensus       150 ~~~~~~l~~----~~~~~~~L~~L~L~~~~~-~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~  224 (592)
T 3ogk_B          150 GFTTDGLLS----IVTHCRKIKTLLMEESSF-SEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS  224 (592)
T ss_dssp             EEEHHHHHH----HHHHCTTCSEEECTTCEE-ECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred             CcCHHHHHH----HHhhCCCCCEEECccccc-cCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence            322111100    013568888888887631 11100000001114678888888765321  0 1122   24678888


Q ss_pred             EEeccCcc--ccccccCCCCcceEEEcCccce----eEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEE
Q 043667          140 LVIEACKE--LSVSVSSLPALCKLKIGGCKKV----VWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILST  213 (387)
Q Consensus       140 L~l~~~~~--l~~~~~~~~~L~~L~i~~~~~~----~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l  213 (387)
                      |++.+|..  +...+..+++|++|.+..+...    .....+..+++|+.+.++++. ...++.. ...+++|++  |.+
T Consensus       225 L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~-~~~~~~L~~--L~L  300 (592)
T 3ogk_B          225 VKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPIL-FPFAAQIRK--LDL  300 (592)
T ss_dssp             EECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGG-GGGGGGCCE--EEE
T ss_pred             EeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHH-HhhcCCCcE--Eec
Confidence            88887653  3345666788888888753222    122334556788888777642 1222222 345677888  888


Q ss_pred             cCCCCccc-ccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEecc----------CCCCCC--c
Q 043667          214 KEQTYIWK-SHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRY----------CKGLVK--L  280 (387)
Q Consensus       214 ~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~----------c~~l~~--~  280 (387)
                      .+|. +.. ....+++.+++|++|++.+  .+.+   .    .+..+...+++|++|++.+          |..++.  +
T Consensus       301 s~~~-l~~~~~~~~~~~~~~L~~L~L~~--~~~~---~----~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~  370 (592)
T 3ogk_B          301 LYAL-LETEDHCTLIQKCPNLEVLETRN--VIGD---R----GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL  370 (592)
T ss_dssp             TTCC-CCHHHHHHHHTTCTTCCEEEEEG--GGHH---H----HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH
T ss_pred             CCCc-CCHHHHHHHHHhCcCCCEEeccC--ccCH---H----HHHHHHHhCCCCCEEEeecCccccccccccCccCHHHH
Confidence            8877 432 1222346788999999883  2222   1    1222222348999999995          766653  2


Q ss_pred             ccccCCCCCccEEEecCCCCceecCCCCc---CCCceEEEecc---CCCCCccc------cccccCCCCCcceEecccCc
Q 043667          281 PQSSLSLSSLREIDIYDCSSLVSFPEVAL---PSKLKKIEIRK---CDALKSLP------EAWMCDTNSSLETLKIERCR  348 (387)
Q Consensus       281 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~---~~~L~~L~l~~---c~~l~~l~------~~~~~~~~~~L~~L~l~~c~  348 (387)
                      ......+++|+.|++ +|++++......+   .++|++|++.+   |+.+++.|      ..+..+++  |++|++++|.
T Consensus       371 ~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~--L~~L~L~~~~  447 (592)
T 3ogk_B          371 IALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKK--LRRFAFYLRQ  447 (592)
T ss_dssp             HHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTT--CCEEEEECCG
T ss_pred             HHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCC--CCEEEEecCC
Confidence            223446899999999 4567654321111   37899999984   56777643      22444666  9999998876


Q ss_pred             c-cccccCC---CCCCCccEEeecCCccccc
Q 043667          349 S-LTYIAGV---QLPPSLKRLDIWNCDNIRT  375 (387)
Q Consensus       349 ~-l~~~~~~---~~~~~L~~L~l~~C~~l~~  375 (387)
                      + +++....   ...++|++|++++|. ++.
T Consensus       448 ~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~  477 (592)
T 3ogk_B          448 GGLTDLGLSYIGQYSPNVRWMLLGYVG-ESD  477 (592)
T ss_dssp             GGCCHHHHHHHHHSCTTCCEEEECSCC-SSH
T ss_pred             CCccHHHHHHHHHhCccceEeeccCCC-CCH
Confidence            4 4432211   346889999999875 543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.71  E-value=2.2e-16  Score=145.27  Aligned_cols=271  Identities=17%  Similarity=0.079  Sum_probs=173.2

Q ss_pred             CCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCC
Q 043667           54 PSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEH  133 (387)
Q Consensus        54 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~  133 (387)
                      +.....+.++. .++.+|..+        .++|++|+++++. +.....    ..+..+++|+.|+++++ .+.+..+  
T Consensus        31 ~~~~~c~~~~~-~l~~iP~~~--------~~~L~~L~l~~n~-i~~~~~----~~~~~l~~L~~L~L~~n-~l~~~~~--   93 (353)
T 2z80_A           31 DRNGICKGSSG-SLNSIPSGL--------TEAVKSLDLSNNR-ITYISN----SDLQRCVNLQALVLTSN-GINTIEE--   93 (353)
T ss_dssp             CTTSEEECCST-TCSSCCTTC--------CTTCCEEECTTSC-CCEECT----TTTTTCTTCCEEECTTS-CCCEECT--
T ss_pred             CCCeEeeCCCC-Ccccccccc--------cccCcEEECCCCc-CcccCH----HHhccCCCCCEEECCCC-ccCccCH--
Confidence            33334444444 455555432        3466666666532 333322    23344566666666554 2221111  


Q ss_pred             CCCccEEEeccCccccccccCCCCcceEEEcCccceeEecc-cccCCCCcEEeccCCCCcccccC-CCCCCCccccceeE
Q 043667          134 LPALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWRSA-TDHLGSQNSVVCRDTSNQVFLAG-PLKPQLPKLEELIL  211 (387)
Q Consensus       134 ~~~L~~L~l~~~~~l~~~~~~~~~L~~L~i~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~-~~~~~l~~L~~l~L  211 (387)
                                      ..+..+++|++|+++++....++.. +..+++|++|+++++. +..++. .....+++|++  +
T Consensus        94 ----------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~--L  154 (353)
T 2z80_A           94 ----------------DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQI--L  154 (353)
T ss_dssp             ----------------TTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCE--E
T ss_pred             ----------------hhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcE--E
Confidence                            2355566677777766544333322 4567778888887653 334444 23567888888  9


Q ss_pred             EEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccc-cCCCCCc
Q 043667          212 STKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQS-SLSLSSL  290 (387)
Q Consensus       212 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L  290 (387)
                      .+.++..++.++...++.+++|++|+++++. +..+.+.    .+..+    ++|++|+++++. ++.++.. +..+++|
T Consensus       155 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~----~l~~l----~~L~~L~l~~n~-l~~~~~~~~~~~~~L  224 (353)
T 2z80_A          155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPK----SLKSI----QNVSHLILHMKQ-HILLLEIFVDVTSSV  224 (353)
T ss_dssp             EEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTT----TTTTC----SEEEEEEEECSC-STTHHHHHHHHTTTE
T ss_pred             ECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHH----HHhcc----ccCCeecCCCCc-cccchhhhhhhcccc
Confidence            9988877777766667889999999999864 4444332    35555    899999999865 6766654 3458999


Q ss_pred             cEEEecCCCCceecCCCC-----cCCCceEEEeccCCCCC-----ccccccccCCCCCcceEecccCcccccccCC--CC
Q 043667          291 REIDIYDCSSLVSFPEVA-----LPSKLKKIEIRKCDALK-----SLPEAWMCDTNSSLETLKIERCRSLTYIAGV--QL  358 (387)
Q Consensus       291 ~~L~l~~c~~l~~~~~~~-----~~~~L~~L~l~~c~~l~-----~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~  358 (387)
                      +.|+++++ .++.++...     ....++.+++.++. +.     .+|..+..+++  |++|+++++ +++.++..  ..
T Consensus       225 ~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~-l~~~~l~~l~~~l~~l~~--L~~L~Ls~N-~l~~i~~~~~~~  299 (353)
T 2z80_A          225 ECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVK-ITDESLFQVMKLLNQISG--LLELEFSRN-QLKSVPDGIFDR  299 (353)
T ss_dssp             EEEEEESC-BCTTCCCC------CCCCCCEEEEESCB-CCHHHHHHHHHHHHTCTT--CCEEECCSS-CCCCCCTTTTTT
T ss_pred             cEEECCCC-ccccccccccccccccchhhcccccccc-ccCcchhhhHHHHhcccC--CCEEECCCC-CCCccCHHHHhc
Confidence            99999984 565544322     23678888888754 43     35666666777  999999996 88888876  46


Q ss_pred             CCCccEEeecCCccccc
Q 043667          359 PPSLKRLDIWNCDNIRT  375 (387)
Q Consensus       359 ~~~L~~L~l~~C~~l~~  375 (387)
                      +++|++|++++++-...
T Consensus       300 l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          300 LTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             CTTCCEEECCSSCBCCC
T ss_pred             CCCCCEEEeeCCCccCc
Confidence            78999999999764433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.71  E-value=1.3e-15  Score=144.96  Aligned_cols=200  Identities=20%  Similarity=0.214  Sum_probs=97.6

Q ss_pred             ccCCCCcceEEEcCccceeEe-cccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccC
Q 043667          152 VSSLPALCKLKIGGCKKVVWR-SATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDI  230 (387)
Q Consensus       152 ~~~~~~L~~L~i~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~  230 (387)
                      +..+++|++|+++++....+. ..+..+++|++|+++++. +..++......+++|++  |.++++. ++.++...+..+
T Consensus        95 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~--L~L~~N~-l~~~~~~~~~~l  170 (452)
T 3zyi_A           95 FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRE--LWLRNNP-IESIPSYAFNRV  170 (452)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCE--EECCSCC-CCEECTTTTTTC
T ss_pred             cCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCE--EECCCCC-cceeCHhHHhcC
Confidence            444455555555544333322 233444555555555432 23333222344455555  5555432 334444445555


Q ss_pred             CCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcC
Q 043667          231 CSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALP  310 (387)
Q Consensus       231 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~  310 (387)
                      ++|++|+++++..++.++..    .+..+    ++|++|++++| .++.++ .+..+++|+.|++++ +.++.++...+.
T Consensus       171 ~~L~~L~l~~~~~l~~i~~~----~~~~l----~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~Ls~-N~l~~~~~~~~~  239 (452)
T 3zyi_A          171 PSLMRLDLGELKKLEYISEG----AFEGL----FNLKYLNLGMC-NIKDMP-NLTPLVGLEELEMSG-NHFPEIRPGSFH  239 (452)
T ss_dssp             TTCCEEECCCCTTCCEECTT----TTTTC----TTCCEEECTTS-CCSSCC-CCTTCTTCCEEECTT-SCCSEECGGGGT
T ss_pred             CcccEEeCCCCCCccccChh----hccCC----CCCCEEECCCC-cccccc-cccccccccEEECcC-CcCcccCccccc
Confidence            66666666665555555443    23333    56666666553 344444 245556666666665 344444333332


Q ss_pred             --CCceEEEeccCCCCCcc-ccccccCCCCCcceEecccCcccccccCC--CCCCCccEEeecCC
Q 043667          311 --SKLKKIEIRKCDALKSL-PEAWMCDTNSSLETLKIERCRSLTYIAGV--QLPPSLKRLDIWNC  370 (387)
Q Consensus       311 --~~L~~L~l~~c~~l~~l-~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~C  370 (387)
                        ++|+.|+++++. +..+ +..+..+.+  |++|+++++ +++.++..  ..+++|++|+++++
T Consensus       240 ~l~~L~~L~L~~n~-l~~~~~~~~~~l~~--L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N  300 (452)
T 3zyi_A          240 GLSSLKKLWVMNSQ-VSLIERNAFDGLAS--LVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHN  300 (452)
T ss_dssp             TCTTCCEEECTTSC-CCEECTTTTTTCTT--CCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSS
T ss_pred             CccCCCEEEeCCCc-CceECHHHhcCCCC--CCEEECCCC-cCCccChHHhccccCCCEEEccCC
Confidence              566666665533 4433 233333444  666666663 55555543  33455666666553

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.70  E-value=2.2e-19  Score=171.50  Aligned_cols=153  Identities=14%  Similarity=0.166  Sum_probs=78.9

Q ss_pred             CCCCcEEEEcCcCCCCCC--CccCCccCCCccEEEeecCCCCCC-----CCC-cCCcCCCcEEEecCCCCceEeCccccC
Q 043667            5 HKNLEQFCISGYRGAKFP--TWFGDSSFSNLVTLKFEYCGMCPT-----LPS-VGQLPSLKHLAVCGMTSVKRLGSEFYG   76 (387)
Q Consensus         5 ~~~L~~L~l~~~~~~~~p--~~~~~~~l~~L~~L~l~~c~~~~~-----l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~   76 (387)
                      +++|++|+++++.....+  ..+..  +++|++|++++| .++.     ++. +..+++|++|+++++ .+.......+ 
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~--~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l-   76 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPL--LQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCV-   76 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHH--HTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHH-
T ss_pred             CccceehhhhhcccCchhHHHHHhh--cCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHH-
Confidence            456777888777654332  11222  777888888776 3442     222 556677888888776 3333211110 


Q ss_pred             CCcccCCC----CcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccc--------cCCCCCCccEEEecc
Q 043667           77 KGAAIPFP----RLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGT--------FPEHLPALEMLVIEA  144 (387)
Q Consensus        77 ~~~~~~~~----~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~--------~~~~~~~L~~L~l~~  144 (387)
                         ...++    +|++|++.++. +.+.........+..+++|++|+++++. +.+.        +....++|++|++++
T Consensus        77 ---~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~  151 (461)
T 1z7x_W           77 ---LQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEY  151 (461)
T ss_dssp             ---HHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             ---HHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCC
Confidence               01223    57777777654 2211100000223356777777777663 2211        112234577777766


Q ss_pred             Cccc-------cccccCCCCcceEEEcCcc
Q 043667          145 CKEL-------SVSVSSLPALCKLKIGGCK  167 (387)
Q Consensus       145 ~~~l-------~~~~~~~~~L~~L~i~~~~  167 (387)
                      |..-       ...+..+++|++|+++++.
T Consensus       152 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  181 (461)
T 1z7x_W          152 CSLSAASCEPLASVLRAKPDFKELTVSNND  181 (461)
T ss_dssp             SCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             CCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence            6422       1233445667777776654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.69  E-value=2.2e-17  Score=149.73  Aligned_cols=240  Identities=12%  Similarity=0.108  Sum_probs=127.0

Q ss_pred             CCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCC
Q 043667           30 FSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQ  107 (387)
Q Consensus        30 l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  107 (387)
                      +++|++|++++| .++.+++  ++.+++|++|+++++ .+..++.       +..+++|++|+++++. +.....     
T Consensus        33 ~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-------~~~l~~L~~L~Ls~n~-l~~l~~-----   97 (317)
T 3o53_A           33 AWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSN-VLYETLD-------LESLSTLRTLDLNNNY-VQELLV-----   97 (317)
T ss_dssp             GGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-------ETTCTTCCEEECCSSE-EEEEEE-----
T ss_pred             CCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-------hhhcCCCCEEECcCCc-cccccC-----
Confidence            678999999986 6666663  888999999999998 5554432       2356777777777642 333322     


Q ss_pred             CccCCCCcceEeeccCcccccccCCCCCCccEEEeccCccccccccCCCCcceEEEcCccceeE-ecccccCCCCcEEec
Q 043667          108 GVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVW-RSATDHLGSQNSVVC  186 (387)
Q Consensus       108 ~i~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~i~~~~~~~~-~~~~~~~~~L~~L~l  186 (387)
                          .++|+.|+++++ .+.+..+..+++|+.|+++++.                     .... ...+..+++|++|++
T Consensus        98 ----~~~L~~L~l~~n-~l~~~~~~~~~~L~~L~l~~N~---------------------l~~~~~~~~~~l~~L~~L~L  151 (317)
T 3o53_A           98 ----GPSIETLHAANN-NISRVSCSRGQGKKNIYLANNK---------------------ITMLRDLDEGCRSRVQYLDL  151 (317)
T ss_dssp             ----CTTCCEEECCSS-CCSEEEECCCSSCEEEECCSSC---------------------CCSGGGBCTGGGSSEEEEEC
T ss_pred             ----CCCcCEEECCCC-ccCCcCccccCCCCEEECCCCC---------------------CCCccchhhhccCCCCEEEC
Confidence                467777777765 3332333334455555554433                     2211 112223344444444


Q ss_pred             cCCCCcccccCCCCCCCccccceeEEEcCCCCcccc-cccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCC
Q 043667          187 RDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKS-HDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCR  265 (387)
Q Consensus       187 ~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~  265 (387)
                      +++.                            +..+ +..+.+.+++|++|+++++ .+..++..      ..+    ++
T Consensus       152 s~N~----------------------------l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~------~~l----~~  192 (317)
T 3o53_A          152 KLNE----------------------------IDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQ------VVF----AK  192 (317)
T ss_dssp             TTSC----------------------------CCEEEGGGGGGGTTTCCEEECTTS-CCCEEECC------CCC----TT
T ss_pred             CCCC----------------------------CCcccHHHHhhccCcCCEEECCCC-cCcccccc------ccc----cc
Confidence            4321                            1111 1111223455666666553 23333221      111    56


Q ss_pred             ccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCC-cCCCceEEEeccCCCC-CccccccccCCCCCcceEe
Q 043667          266 LEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVA-LPSKLKKIEIRKCDAL-KSLPEAWMCDTNSSLETLK  343 (387)
Q Consensus       266 L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~L~~L~l~~c~~l-~~l~~~~~~~~~~~L~~L~  343 (387)
                      |++|+++++ .++.+++.+..+++|+.|++++ +.++.++... ..++|+.|++++++-. ..++..+.....  |+.++
T Consensus       193 L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~--L~~l~  268 (317)
T 3o53_A          193 LKTLDLSSN-KLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR--VQTVA  268 (317)
T ss_dssp             CCEEECCSS-CCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHH--HHHHH
T ss_pred             CCEEECCCC-cCCcchhhhcccCcccEEECcC-CcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhcccc--ceEEE
Confidence            666666653 3555555555666666666666 3555555431 1256666666665422 234444444555  67777


Q ss_pred             cccCcccccc
Q 043667          344 IERCRSLTYI  353 (387)
Q Consensus       344 l~~c~~l~~~  353 (387)
                      +.+++.++..
T Consensus       269 l~~~~~l~~~  278 (317)
T 3o53_A          269 KQTVKKLTGQ  278 (317)
T ss_dssp             HHHHHHHHSS
T ss_pred             CCCchhccCC
Confidence            7665555443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.69  E-value=1.5e-18  Score=170.90  Aligned_cols=221  Identities=16%  Similarity=0.154  Sum_probs=141.1

Q ss_pred             CCCccEEEeecCCCCCCCCC----------------cCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccc
Q 043667           30 FSNLVTLKFEYCGMCPTLPS----------------VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDA   93 (387)
Q Consensus        30 l~~L~~L~l~~c~~~~~l~~----------------~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~   93 (387)
                      +++|++|++++|..+.++..                ...+++|++|+++++. +.......+    ...+++|++|++.+
T Consensus        65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l----~~~~~~L~~L~L~~  139 (594)
T 2p1m_B           65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELI----AKSFKNFKVLVLSS  139 (594)
T ss_dssp             CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHH----HHHCTTCCEEEEES
T ss_pred             CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHH----HHhCCCCcEEeCCC
Confidence            89999999999876543321                2358899999999983 333222111    12589999999999


Q ss_pred             cCCccccccCcCCCCcc-CCCCcceEeeccCccccc-------ccCCCCCCccEEEeccCc-ccc-----ccccCCCCcc
Q 043667           94 MLGWEDWIPLRSGQGVE-GFPKLRELHILRCSKLQG-------TFPEHLPALEMLVIEACK-ELS-----VSVSSLPALC  159 (387)
Q Consensus        94 ~~~l~~~~~~~~~~~i~-~~~~L~~L~l~~~~~l~~-------~~~~~~~~L~~L~l~~~~-~l~-----~~~~~~~~L~  159 (387)
                      |..+.....    ..+. .+++|++|++++|. +++       .++..+++|+.|++++|. .+.     ..+..+++|+
T Consensus       140 ~~~~~~~~l----~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~  214 (594)
T 2p1m_B          140 CEGFSTDGL----AAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLK  214 (594)
T ss_dssp             CEEEEHHHH----HHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCC
T ss_pred             cCCCCHHHH----HHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCc
Confidence            876554322    2222 58999999999875 321       344567899999999886 222     2234579999


Q ss_pred             eEEEcCcccee-EecccccCCCCcEEeccCC-------------------CCccccc---CCC-------CCCCccccce
Q 043667          160 KLKIGGCKKVV-WRSATDHLGSQNSVVCRDT-------------------SNQVFLA---GPL-------KPQLPKLEEL  209 (387)
Q Consensus       160 ~L~i~~~~~~~-~~~~~~~~~~L~~L~l~~~-------------------~~l~~~~---~~~-------~~~l~~L~~l  209 (387)
                      +|++.+|.... ++..+..+++|++|.+.++                   .++..+.   ...       ...+++|++ 
T Consensus       215 ~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~-  293 (594)
T 2p1m_B          215 SLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTT-  293 (594)
T ss_dssp             EEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCE-
T ss_pred             EEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCE-
Confidence            99999884433 4445566788998875544                   3222221   000       114577888 


Q ss_pred             eEEEcCCCCccc-ccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEec
Q 043667          210 ILSTKEQTYIWK-SHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLR  272 (387)
Q Consensus       210 ~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~  272 (387)
                       |.+..|. ++. ....++..+++|++|++.+|  +.+   .    .+..+...+++|++|++.
T Consensus       294 -L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~---~----~l~~l~~~~~~L~~L~L~  346 (594)
T 2p1m_B          294 -LNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IED---A----GLEVLASTCKDLRELRVF  346 (594)
T ss_dssp             -EECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHH---H----HHHHHHHHCTTCCEEEEE
T ss_pred             -EEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCH---H----HHHHHHHhCCCCCEEEEe
Confidence             8888877 432 12223457899999999976  221   1    122222224788888884

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.68  E-value=1.8e-18  Score=165.03  Aligned_cols=343  Identities=17%  Similarity=0.136  Sum_probs=221.3

Q ss_pred             CCCCCcEEEEcCcCCC-----CCCCccCCccCCCccEEEeecCCCCCCCC--C-cCCcC----CCcEEEecCCCCceEeC
Q 043667            4 PHKNLEQFCISGYRGA-----KFPTWFGDSSFSNLVTLKFEYCGMCPTLP--S-VGQLP----SLKHLAVCGMTSVKRLG   71 (387)
Q Consensus         4 ~~~~L~~L~l~~~~~~-----~~p~~~~~~~l~~L~~L~l~~c~~~~~l~--~-~~~l~----~L~~L~l~~~~~l~~~~   71 (387)
                      .+++|++|+++++...     .++..+..  +++|++|+++++ .+++..  . ...++    +|++|++++| .+...+
T Consensus        26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~--~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~  101 (461)
T 1z7x_W           26 LLQQCQVVRLDDCGLTEARCKDISSALRV--NPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAG  101 (461)
T ss_dssp             HHTTCSEEEEESSCCCHHHHHHHHHHHHT--CTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGG
T ss_pred             hcCCccEEEccCCCCCHHHHHHHHHHHHh--CCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHH
Confidence            3578999999999876     34555555  799999999986 454321  1 22344    7999999999 454322


Q ss_pred             ccccCCCcccCCCCcceeeccccCCccccccCcCCCCcc-----CCCCcceEeeccCcccccc----cCC---CCCCccE
Q 043667           72 SEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVE-----GFPKLRELHILRCSKLQGT----FPE---HLPALEM  139 (387)
Q Consensus        72 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~-----~~~~L~~L~l~~~~~l~~~----~~~---~~~~L~~  139 (387)
                      ..... ..+..+++|++|+++++. +.+...    ..+.     ..++|++|+++++ .+.+.    ++.   .+++|+.
T Consensus       102 ~~~l~-~~l~~~~~L~~L~Ls~n~-i~~~~~----~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~  174 (461)
T 1z7x_W          102 CGVLS-STLRTLPTLQELHLSDNL-LGDAGL----QLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKE  174 (461)
T ss_dssp             HHHHH-HHTTSCTTCCEEECCSSB-CHHHHH----HHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCE
T ss_pred             HHHHH-HHHccCCceeEEECCCCc-CchHHH----HHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCE
Confidence            00000 013568999999999865 332211    1111     2568999999988 33321    222   3689999


Q ss_pred             EEeccCcccc---ccc-----cCCCCcceEEEcCcccee-----EecccccCCCCcEEeccCCCCcccc-----cCCCCC
Q 043667          140 LVIEACKELS---VSV-----SSLPALCKLKIGGCKKVV-----WRSATDHLGSQNSVVCRDTSNQVFL-----AGPLKP  201 (387)
Q Consensus       140 L~l~~~~~l~---~~~-----~~~~~L~~L~i~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~  201 (387)
                      |+++++..-.   ..+     ...++|++|+++++....     +...+..+++|++|+++++. +...     ......
T Consensus       175 L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~  253 (461)
T 1z7x_W          175 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLH  253 (461)
T ss_dssp             EECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTS
T ss_pred             EECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhc
Confidence            9999986322   111     135699999999885433     34455678999999999874 2221     111123


Q ss_pred             CCccccceeEEEcCCCCccc-----ccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCC
Q 043667          202 QLPKLEELILSTKEQTYIWK-----SHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKG  276 (387)
Q Consensus       202 ~l~~L~~l~L~l~~~~~~~~-----~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~  276 (387)
                      .+++|++  +.+++|. ++.     ++.. +..+++|++|+++++ .+.......+...+   ....++|++|++++|. 
T Consensus       254 ~~~~L~~--L~L~~n~-l~~~~~~~l~~~-l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l---~~~~~~L~~L~L~~n~-  324 (461)
T 1z7x_W          254 PSSRLRT--LWIWECG-ITAKGCGDLCRV-LRAKESLKELSLAGN-ELGDEGARLLCETL---LEPGCQLESLWVKSCS-  324 (461)
T ss_dssp             TTCCCCE--EECTTSC-CCHHHHHHHHHH-HHHCTTCCEEECTTC-CCHHHHHHHHHHHH---TSTTCCCCEEECTTSC-
T ss_pred             CCCCceE--EECcCCC-CCHHHHHHHHHH-HhhCCCcceEECCCC-CCchHHHHHHHHHh---ccCCccceeeEcCCCC-
Confidence            4678888  9999884 443     3333 566899999999986 44443322211111   1122699999999976 


Q ss_pred             CCC-----cccccCCCCCccEEEecCCCCceecCCCC----c---CCCceEEEeccCCCCC-----ccccccccCCCCCc
Q 043667          277 LVK-----LPQSSLSLSSLREIDIYDCSSLVSFPEVA----L---PSKLKKIEIRKCDALK-----SLPEAWMCDTNSSL  339 (387)
Q Consensus       277 l~~-----~~~~~~~~~~L~~L~l~~c~~l~~~~~~~----~---~~~L~~L~l~~c~~l~-----~l~~~~~~~~~~~L  339 (387)
                      ++.     ++..+..+++|+.|+++++ .++......    +   .++|++|++++|. ++     .++..+..+++  |
T Consensus       325 l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~--L  400 (461)
T 1z7x_W          325 FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHS--L  400 (461)
T ss_dssp             CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCC--C
T ss_pred             CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCC--c
Confidence            443     3455667899999999985 665532111    1   3699999999975 66     56776666777  9


Q ss_pred             ceEecccCcccccccCC-------CCCCCccEEeecCCcc
Q 043667          340 ETLKIERCRSLTYIAGV-------QLPPSLKRLDIWNCDN  372 (387)
Q Consensus       340 ~~L~l~~c~~l~~~~~~-------~~~~~L~~L~l~~C~~  372 (387)
                      ++|++++| .+++....       ....+|+.|++.++..
T Consensus       401 ~~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~  439 (461)
T 1z7x_W          401 RELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIYW  439 (461)
T ss_dssp             CEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred             cEEECCCC-CCCHHHHHHHHHHhccCCcchhheeeccccc
Confidence            99999996 56543211       2234688888877543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.68  E-value=1.3e-15  Score=137.22  Aligned_cols=98  Identities=16%  Similarity=0.129  Sum_probs=72.9

Q ss_pred             CcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeC---ccccCCCcccC
Q 043667            8 LEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLG---SEFYGKGAAIP   82 (387)
Q Consensus         8 L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~---~~~~~~~~~~~   82 (387)
                      -+.++.++.....+|..+    .++|++|+++++ .++.+|.  ++++++|++|++.++ .+..++   ..      ...
T Consensus         9 ~~~l~c~~~~l~~ip~~~----~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~------~~~   76 (306)
T 2z66_A            9 GTEIRCNSKGLTSVPTGI----PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQS------DFG   76 (306)
T ss_dssp             TTEEECCSSCCSSCCSCC----CTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHH------HHS
T ss_pred             CCEEEcCCCCcccCCCCC----CCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCC-ccCcccCcccc------ccc
Confidence            356777888888888754    468999999996 6778886  789999999999998 555442   22      235


Q ss_pred             CCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccC
Q 043667           83 FPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRC  123 (387)
Q Consensus        83 ~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~  123 (387)
                      +++|++|+++++. +....     ..+..+++|++|+++++
T Consensus        77 ~~~L~~L~Ls~n~-i~~l~-----~~~~~l~~L~~L~l~~n  111 (306)
T 2z66_A           77 TTSLKYLDLSFNG-VITMS-----SNFLGLEQLEHLDFQHS  111 (306)
T ss_dssp             CSCCCEEECCSCS-EEEEE-----EEEETCTTCCEEECTTS
T ss_pred             ccccCEEECCCCc-cccCh-----hhcCCCCCCCEEECCCC
Confidence            7999999999754 33222     22446899999999887

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.66  E-value=1.5e-15  Score=131.84  Aligned_cols=179  Identities=16%  Similarity=0.136  Sum_probs=117.1

Q ss_pred             cCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHH
Q 043667          177 HLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQ  256 (387)
Q Consensus       177 ~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  256 (387)
                      .+++|++|+++++..+..++......+++|++  +.+.+|..++.++...++.+++|++|+++++ .+..++.      +
T Consensus        53 ~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~--L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp~------~  123 (239)
T 2xwt_C           53 NLPNISRIYVSIDVTLQQLESHSFYNLSKVTH--IEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPD------L  123 (239)
T ss_dssp             TCTTCCEEEEECCSSCCEECTTTEESCTTCCE--EEEEEETTCCEECTTSEECCTTCCEEEEEEE-CCCSCCC------C
T ss_pred             CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcE--EECCCCCCeeEcCHHHhCCCCCCCEEeCCCC-CCccccc------c
Confidence            34444444444443233333222334455555  6665545555666555677888888888875 3444442      2


Q ss_pred             hhhhhccCCcc---EEEeccCCCCCCcccc-cCCCCCcc-EEEecCCCCceecCCCCcC-CCceEEEeccCCCCCcccc-
Q 043667          257 QQLCELSCRLE---YLRLRYCKGLVKLPQS-SLSLSSLR-EIDIYDCSSLVSFPEVALP-SKLKKIEIRKCDALKSLPE-  329 (387)
Q Consensus       257 ~~l~~~~~~L~---~L~l~~c~~l~~~~~~-~~~~~~L~-~L~l~~c~~l~~~~~~~~~-~~L~~L~l~~c~~l~~l~~-  329 (387)
                      ..+    ++|+   +|++++++.++.++.. +..+++|+ .|++++ +.++.++...+. ++|++|+++++..++.++. 
T Consensus       124 ~~l----~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~  198 (239)
T 2xwt_C          124 TKV----YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKD  198 (239)
T ss_dssp             TTC----CBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTTTTTTCEEEEEECTTCTTCCEECTT
T ss_pred             ccc----cccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHhhcCCCCCCEEEcCCCCCcccCCHH
Confidence            333    5666   8899887567777754 67888899 999987 577788766554 6899999988756888764 


Q ss_pred             ccccC-CCCCcceEecccCcccccccCCCCCCCccEEeecCCccc
Q 043667          330 AWMCD-TNSSLETLKIERCRSLTYIAGVQLPPSLKRLDIWNCDNI  373 (387)
Q Consensus       330 ~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~C~~l  373 (387)
                      .+... .+  |++|++++ ++++.++.. .+++|++|+++++..|
T Consensus       199 ~~~~l~~~--L~~L~l~~-N~l~~l~~~-~~~~L~~L~l~~~~~l  239 (239)
T 2xwt_C          199 AFGGVYSG--PSLLDVSQ-TSVTALPSK-GLEHLKELIARNTWTL  239 (239)
T ss_dssp             TTTTCSBC--CSEEECTT-CCCCCCCCT-TCTTCSEEECTTC---
T ss_pred             HhhccccC--CcEEECCC-CccccCChh-HhccCceeeccCccCC
Confidence            44555 66  99999998 578888765 6788999999887654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.65  E-value=8.4e-15  Score=130.56  Aligned_cols=213  Identities=17%  Similarity=0.123  Sum_probs=128.2

Q ss_pred             ceEeeccCcccccccCCC-CCCccEEEeccCcccc---ccccCCCCcceEEEcCccceeE-ecccccCCCCcEEeccCCC
Q 043667          116 RELHILRCSKLQGTFPEH-LPALEMLVIEACKELS---VSVSSLPALCKLKIGGCKKVVW-RSATDHLGSQNSVVCRDTS  190 (387)
Q Consensus       116 ~~L~l~~~~~l~~~~~~~-~~~L~~L~l~~~~~l~---~~~~~~~~L~~L~i~~~~~~~~-~~~~~~~~~L~~L~l~~~~  190 (387)
                      +.++.++. .++ .+|.. .++|+.|+++++..-.   ..+..+++|++|+++++....+ +..+..+++|++|+++++.
T Consensus        14 ~~~~c~~~-~l~-~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           14 VTTSCPQQ-GLQ-AVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             CEEECCSS-CCS-SCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCcC-Ccc-cCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence            34544443 344 45543 4588888888865322   3467788888888887755443 3456667888888888776


Q ss_pred             CcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEE
Q 043667          191 NQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLR  270 (387)
Q Consensus       191 ~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~  270 (387)
                      .+..+.......+++|++  +.+.++. +..++...++.+++|++|+++++ .+..++..    .+..+    ++|++|+
T Consensus        92 ~l~~~~~~~~~~l~~L~~--L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~----~~~~l----~~L~~L~  159 (285)
T 1ozn_A           92 QLRSVDPATFHGLGRLHT--LHLDRCG-LQELGPGLFRGLAALQYLYLQDN-ALQALPDD----TFRDL----GNLTHLF  159 (285)
T ss_dssp             TCCCCCTTTTTTCTTCCE--EECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT----TTTTC----TTCCEEE
T ss_pred             CccccCHHHhcCCcCCCE--EECCCCc-CCEECHhHhhCCcCCCEEECCCC-cccccCHh----HhccC----CCccEEE
Confidence            555554333556667776  7776654 33343334566777777777764 34444332    23444    6777777


Q ss_pred             eccCCCCCCccc-ccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCcccc-ccccCCCCCcceEeccc
Q 043667          271 LRYCKGLVKLPQ-SSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPE-AWMCDTNSSLETLKIER  346 (387)
Q Consensus       271 l~~c~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~-~~~~~~~~~L~~L~l~~  346 (387)
                      ++++ .++.++. .+..+++|+.|+++++ .++.+....+.  ++|++|+++++ .++.++. .+..+++  |++|++++
T Consensus       160 l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~--L~~L~l~~  234 (285)
T 1ozn_A          160 LHGN-RISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRA--LQYLRLND  234 (285)
T ss_dssp             CCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTT--CCEEECCS
T ss_pred             CCCC-cccccCHHHhcCccccCEEECCCC-cccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcc--cCEEeccC
Confidence            7764 4555554 3566777777777763 45555333332  67777777764 3555553 3444555  77777776


Q ss_pred             C
Q 043667          347 C  347 (387)
Q Consensus       347 c  347 (387)
                      +
T Consensus       235 N  235 (285)
T 1ozn_A          235 N  235 (285)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.65  E-value=2.3e-14  Score=127.66  Aligned_cols=214  Identities=17%  Similarity=0.128  Sum_probs=132.1

Q ss_pred             cEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCc
Q 043667            9 EQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRL   86 (387)
Q Consensus         9 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L   86 (387)
                      +.++.++.....+|..+    .++|++|+++++ .++.++.  ++.+++|++|+++++ .+..+....     +..+++|
T Consensus        14 ~~~~c~~~~l~~ip~~~----~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~-----~~~l~~L   82 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI----PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSN-VLARIDAAA-----FTGLALL   82 (285)
T ss_dssp             CEEECCSSCCSSCCTTC----CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTT-----TTTCTTC
T ss_pred             eEEEcCcCCcccCCcCC----CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCC-ccceeCHhh-----cCCccCC
Confidence            56777777777787643    568999999985 6777774  888999999999988 666664433     3457899


Q ss_pred             ceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCC---CCCCccEEEeccCcccc---ccccCCCCcce
Q 043667           87 ETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPE---HLPALEMLVIEACKELS---VSVSSLPALCK  160 (387)
Q Consensus        87 ~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~---~~~~L~~L~l~~~~~l~---~~~~~~~~L~~  160 (387)
                      ++|+++++..+.....    ..+..+++|++|+++++. +.+..+.   .+++|+.|+++++....   ..+..+++|++
T Consensus        83 ~~L~l~~n~~l~~~~~----~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  157 (285)
T 1ozn_A           83 EQLDLSDNAQLRSVDP----ATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH  157 (285)
T ss_dssp             CEEECCSCTTCCCCCT----TTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CEEeCCCCCCccccCH----HHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccE
Confidence            9999988765555544    455568889999998763 3323232   35677777777764221   23566677777


Q ss_pred             EEEcCccceeEec-ccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEec
Q 043667          161 LKIGGCKKVVWRS-ATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTID  239 (387)
Q Consensus       161 L~i~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  239 (387)
                      |+++++....++. .+..+++|++|+++++.- ..........+++|++  +.++++. +..++...+..+++|+.|+++
T Consensus       158 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~--L~l~~n~-l~~~~~~~~~~l~~L~~L~l~  233 (285)
T 1ozn_A          158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRV-AHVHPHAFRDLGRLMT--LYLFANN-LSALPTEALAPLRALQYLRLN  233 (285)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCE--EECCSSC-CSCCCHHHHTTCTTCCEEECC
T ss_pred             EECCCCcccccCHHHhcCccccCEEECCCCcc-cccCHhHccCcccccE--eeCCCCc-CCcCCHHHcccCcccCEEecc
Confidence            7777665444332 345566677766665532 2221111334445555  5555432 333333334445555555555


Q ss_pred             CCC
Q 043667          240 WCP  242 (387)
Q Consensus       240 ~~~  242 (387)
                      +++
T Consensus       234 ~N~  236 (285)
T 1ozn_A          234 DNP  236 (285)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.63  E-value=7.6e-15  Score=132.20  Aligned_cols=52  Identities=13%  Similarity=0.232  Sum_probs=29.3

Q ss_pred             cEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccc
Q 043667           34 VTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDA   93 (387)
Q Consensus        34 ~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~   93 (387)
                      +.++.++ ..++.+|. +-.++|++|++.++ .++.++...+     ..+++|++|++.+
T Consensus        10 ~~l~c~~-~~l~~ip~-~~~~~l~~L~L~~n-~l~~i~~~~~-----~~l~~L~~L~L~~   61 (306)
T 2z66_A           10 TEIRCNS-KGLTSVPT-GIPSSATRLELESN-KLQSLPHGVF-----DKLTQLTKLSLSS   61 (306)
T ss_dssp             TEEECCS-SCCSSCCS-CCCTTCCEEECCSS-CCCCCCTTTT-----TTCTTCSEEECCS
T ss_pred             CEEEcCC-CCcccCCC-CCCCCCCEEECCCC-ccCccCHhHh-----hccccCCEEECCC
Confidence            4556655 35666665 22367778887777 5555554321     2355555555554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.62  E-value=4.8e-15  Score=128.58  Aligned_cols=190  Identities=14%  Similarity=0.175  Sum_probs=146.9

Q ss_pred             CCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhh
Q 043667          179 GSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQ  258 (387)
Q Consensus       179 ~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~  258 (387)
                      +++++|+++++. +..++......+++|++  +.+.++..++.++...++.+++|++|++++|..+..+++.    .+..
T Consensus        31 ~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~--L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~----~f~~  103 (239)
T 2xwt_C           31 PSTQTLKLIETH-LRTIPSHAFSNLPNISR--IYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD----ALKE  103 (239)
T ss_dssp             TTCCEEEEESCC-CSEECTTTTTTCTTCCE--EEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT----SEEC
T ss_pred             CcccEEEEeCCc-ceEECHHHccCCCCCcE--EeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH----HhCC
Confidence            467777776653 44444433567888888  9999887687888766888999999999986778777654    3555


Q ss_pred             hhhccCCccEEEeccCCCCCCcccccCCCCCcc---EEEecCCCCceecCCCCcC--CCce-EEEeccCCCCCccccccc
Q 043667          259 LCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLR---EIDIYDCSSLVSFPEVALP--SKLK-KIEIRKCDALKSLPEAWM  332 (387)
Q Consensus       259 l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~---~L~l~~c~~l~~~~~~~~~--~~L~-~L~l~~c~~l~~l~~~~~  332 (387)
                      +    ++|++|+++++. ++.+|. +..+++|+   .|+++++..++.++...+.  ++|+ +|+++++ .++.++....
T Consensus       104 l----~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~  176 (239)
T 2xwt_C          104 L----PLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAF  176 (239)
T ss_dssp             C----TTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTT
T ss_pred             C----CCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhc
Confidence            5    899999999864 777886 77888888   9999996689998876554  8999 9999985 4788887544


Q ss_pred             cCCCCCcceEecccCcccccccCC--CCC-CCccEEeecCCccccccccccccccCC
Q 043667          333 CDTNSSLETLKIERCRSLTYIAGV--QLP-PSLKRLDIWNCDNIRTLTVEEGVQSSS  386 (387)
Q Consensus       333 ~~~~~~L~~L~l~~c~~l~~~~~~--~~~-~~L~~L~l~~C~~l~~l~~~~~~~~~~  386 (387)
                      ...+  |++|++++++.++.++..  ... ++|++|++++ ++++.+|.. +++.++
T Consensus       177 ~~~~--L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~  229 (239)
T 2xwt_C          177 NGTK--LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLK  229 (239)
T ss_dssp             TTCE--EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCS
T ss_pred             CCCC--CCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-HhccCc
Confidence            4455  999999997669888765  445 8999999999 678999865 555543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.62  E-value=7.1e-15  Score=140.95  Aligned_cols=139  Identities=9%  Similarity=-0.002  Sum_probs=82.7

Q ss_pred             CCCccEEEeecCCCCCCCC--CcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCC
Q 043667           30 FSNLVTLKFEYCGMCPTLP--SVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQ  107 (387)
Q Consensus        30 l~~L~~L~l~~c~~~~~l~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  107 (387)
                      +++|++|++++| .+..++  .++.+++|++|+++++ .+...+.       +..+++|++|+++++ .+.....     
T Consensus        33 ~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-------l~~l~~L~~L~Ls~N-~l~~l~~-----   97 (487)
T 3oja_A           33 AWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSN-VLYETLD-------LESLSTLRTLDLNNN-YVQELLV-----   97 (487)
T ss_dssp             GGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-------CTTCTTCCEEECCSS-EEEEEEE-----
T ss_pred             CCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-------cccCCCCCEEEecCC-cCCCCCC-----
Confidence            458999999886 666665  3888899999999988 4554432       245778888888764 3333332     


Q ss_pred             CccCCCCcceEeeccCcccccccCCCCCCccEEEeccCccc---cccccCCCCcceEEEcCcccee-Eecccc-cCCCCc
Q 043667          108 GVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKEL---SVSVSSLPALCKLKIGGCKKVV-WRSATD-HLGSQN  182 (387)
Q Consensus       108 ~i~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~l---~~~~~~~~~L~~L~i~~~~~~~-~~~~~~-~~~~L~  182 (387)
                          .++|+.|+++++ .+.+..+..+++|+.|+++++..-   +..+..+++|+.|+++++.... .+..+. .+++|+
T Consensus        98 ----~~~L~~L~L~~N-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~  172 (487)
T 3oja_A           98 ----GPSIETLHAANN-NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE  172 (487)
T ss_dssp             ----CTTCCEEECCSS-CCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred             ----CCCcCEEECcCC-cCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence                477888888776 344344445666777766665421   1234455566666665554333 122221 344555


Q ss_pred             EEeccC
Q 043667          183 SVVCRD  188 (387)
Q Consensus       183 ~L~l~~  188 (387)
                      +|++++
T Consensus       173 ~L~Ls~  178 (487)
T 3oja_A          173 HLNLQY  178 (487)
T ss_dssp             EEECTT
T ss_pred             EEecCC
Confidence            555544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.60  E-value=1.4e-14  Score=131.10  Aligned_cols=240  Identities=13%  Similarity=0.095  Sum_probs=161.8

Q ss_pred             CCCCcceEeeccCcccccccC---CCCCCccEEEeccCcccc-ccccCCCCcceEEEcCccceeEecccccCCCCcEEec
Q 043667          111 GFPKLRELHILRCSKLQGTFP---EHLPALEMLVIEACKELS-VSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVC  186 (387)
Q Consensus       111 ~~~~L~~L~l~~~~~l~~~~~---~~~~~L~~L~l~~~~~l~-~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l  186 (387)
                      .+++|++|+++++ .+.+..|   ..+++|+.|+++++.... ..+..+++|++|+++++....++    ..++|++|++
T Consensus        32 ~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l  106 (317)
T 3o53_A           32 SAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL----VGPSIETLHA  106 (317)
T ss_dssp             TGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE----ECTTCCEEEC
T ss_pred             cCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc----CCCCcCEEEC
Confidence            3678999999987 4442332   357899999998876322 34788899999999987644433    3488999999


Q ss_pred             cCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCc
Q 043667          187 RDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRL  266 (387)
Q Consensus       187 ~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L  266 (387)
                      +++.- ..++   +..+++|++  +.++++. +..++...++.+++|++|+++++ .+..++...   ....+    ++|
T Consensus       107 ~~n~l-~~~~---~~~~~~L~~--L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~---~~~~l----~~L  171 (317)
T 3o53_A          107 ANNNI-SRVS---CSRGQGKKN--IYLANNK-ITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAE---LAASS----DTL  171 (317)
T ss_dssp             CSSCC-SEEE---ECCCSSCEE--EECCSSC-CCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGG---GGGGT----TTC
T ss_pred             CCCcc-CCcC---ccccCCCCE--EECCCCC-CCCccchhhhccCCCCEEECCCC-CCCcccHHH---Hhhcc----CcC
Confidence            87643 3332   234567777  8887764 44444444667888999999885 444443321   11233    888


Q ss_pred             cEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCc-CCCceEEEeccCCCCCccccccccCCCCCcceEecc
Q 043667          267 EYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVAL-PSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIE  345 (387)
Q Consensus       267 ~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~-~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~  345 (387)
                      ++|++++|. ++.++. ...+++|+.|++++ +.++.++.... .++|++|+++++ .++.+|..+...++  |++|+++
T Consensus       172 ~~L~L~~N~-l~~~~~-~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~--L~~L~l~  245 (317)
T 3o53_A          172 EHLNLQYNF-IYDVKG-QVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQN--LEHFDLR  245 (317)
T ss_dssp             CEEECTTSC-CCEEEC-CCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTT--CCEEECT
T ss_pred             CEEECCCCc-Cccccc-ccccccCCEEECCC-CcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCC--CCEEEcc
Confidence            999998854 666654 33578899999988 47777765422 288999999885 57788877666666  9999998


Q ss_pred             cCcccc--cccCC-CCCCCccEEeecCCccccccc
Q 043667          346 RCRSLT--YIAGV-QLPPSLKRLDIWNCDNIRTLT  377 (387)
Q Consensus       346 ~c~~l~--~~~~~-~~~~~L~~L~l~~C~~l~~l~  377 (387)
                      ++ .++  .++.. ...++|+++++.+++.++...
T Consensus       246 ~N-~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~  279 (317)
T 3o53_A          246 GN-GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN  279 (317)
T ss_dssp             TC-CCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred             CC-CccCcCHHHHHhccccceEEECCCchhccCCc
Confidence            85 444  33322 455778888888666665544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.59  E-value=2.1e-14  Score=131.86  Aligned_cols=228  Identities=18%  Similarity=0.170  Sum_probs=153.0

Q ss_pred             ccccccCCCC-CCccEEEeccCcc--cc-ccccCCCCcceEEEcCcccee-Ee-cccccCCCCcEEeccCCCCcccccCC
Q 043667          125 KLQGTFPEHL-PALEMLVIEACKE--LS-VSVSSLPALCKLKIGGCKKVV-WR-SATDHLGSQNSVVCRDTSNQVFLAGP  198 (387)
Q Consensus       125 ~l~~~~~~~~-~~L~~L~l~~~~~--l~-~~~~~~~~L~~L~i~~~~~~~-~~-~~~~~~~~L~~L~l~~~~~l~~~~~~  198 (387)
                      +++ .+|..+ +++++|+++++..  ++ ..+.++++|++|+++++...+ ++ ..+..++++.++.+.++..+..++..
T Consensus        20 ~Lt-~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~   98 (350)
T 4ay9_X           20 KVT-EIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE   98 (350)
T ss_dssp             TCC-SCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred             CCC-ccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch
Confidence            444 566654 4788999888652  32 357788889999998876544 22 23456677777666666666666655


Q ss_pred             CCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCC
Q 043667          199 LKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLV  278 (387)
Q Consensus       199 ~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~  278 (387)
                      ....+++|++  +.+.++. +..++...+....++..+++.++..+..++...    +..+   ...++.|++++ +.++
T Consensus        99 ~f~~l~~L~~--L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~----f~~~---~~~l~~L~L~~-N~i~  167 (350)
T 4ay9_X           99 AFQNLPNLQY--LLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS----FVGL---SFESVILWLNK-NGIQ  167 (350)
T ss_dssp             SBCCCTTCCE--EEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTS----STTS---BSSCEEEECCS-SCCC
T ss_pred             hhhhcccccc--ccccccc-cccCCchhhcccchhhhhhhccccccccccccc----hhhc---chhhhhhcccc-cccc
Confidence            4667777777  7776543 344444333445667778887777777665532    2222   14677788876 4577


Q ss_pred             CcccccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCccccccccCCCCCcceEecccCcccccccCC
Q 043667          279 KLPQSSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGV  356 (387)
Q Consensus       279 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~  356 (387)
                      .++.......+|+++++.+++.++.++...+.  ++|++|+++++ .++.+|...  +.+  |++|.+.++++++.+|.-
T Consensus       168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~--~~~--L~~L~~l~~~~l~~lP~l  242 (350)
T 4ay9_X          168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYG--LEN--LKKLRARSTYNLKKLPTL  242 (350)
T ss_dssp             EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSS--CTT--CCEEECTTCTTCCCCCCT
T ss_pred             CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhh--hcc--chHhhhccCCCcCcCCCc
Confidence            77776666677888888877788888776554  78888888874 577777542  556  888888888888888765


Q ss_pred             CCCCCccEEeecC
Q 043667          357 QLPPSLKRLDIWN  369 (387)
Q Consensus       357 ~~~~~L~~L~l~~  369 (387)
                      ..+++|+.+++.+
T Consensus       243 ~~l~~L~~l~l~~  255 (350)
T 4ay9_X          243 EKLVALMEASLTY  255 (350)
T ss_dssp             TTCCSCCEEECSC
T ss_pred             hhCcChhhCcCCC
Confidence            6677888887753

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.58  E-value=5.3e-14  Score=134.85  Aligned_cols=230  Identities=13%  Similarity=0.092  Sum_probs=132.5

Q ss_pred             CCCCcceEeeccCcccccccC---CCCCCccEEEeccCcccc-ccccCCCCcceEEEcCccceeEecccccCCCCcEEec
Q 043667          111 GFPKLRELHILRCSKLQGTFP---EHLPALEMLVIEACKELS-VSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVC  186 (387)
Q Consensus       111 ~~~~L~~L~l~~~~~l~~~~~---~~~~~L~~L~l~~~~~l~-~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l  186 (387)
                      .+++|+.|+++++ .+.+..|   ..+++|+.|+++++.... ..+..+++|++|+++++....++    ..++|++|++
T Consensus        32 ~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~----~~~~L~~L~L  106 (487)
T 3oja_A           32 SAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL----VGPSIETLHA  106 (487)
T ss_dssp             TGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEE----ECTTCCEEEC
T ss_pred             cCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCC----CCCCcCEEEC
Confidence            3568899999887 4443333   246788888888776321 33777888888888877544333    2378888888


Q ss_pred             cCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHH-hhhhhccCC
Q 043667          187 RDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQ-QQLCELSCR  265 (387)
Q Consensus       187 ~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~l~~~~~~  265 (387)
                      +++.- ..++   +..+++|+.  |.+.++. +..++...++.+++|+.|+++++ .+..+++.    .+ ..+    ++
T Consensus       107 ~~N~l-~~~~---~~~l~~L~~--L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~----~l~~~l----~~  170 (487)
T 3oja_A          107 ANNNI-SRVS---CSRGQGKKN--IYLANNK-ITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFA----ELAASS----DT  170 (487)
T ss_dssp             CSSCC-CCEE---ECCCSSCEE--EECCSSC-CCSGGGBCGGGGSSEEEEECTTS-CCCEEEGG----GGGGGT----TT
T ss_pred             cCCcC-CCCC---ccccCCCCE--EECCCCC-CCCCCchhhcCCCCCCEEECCCC-CCCCcChH----HHhhhC----Cc
Confidence            77532 2222   223456666  6666654 33333333556777777777764 33332222    12 133    67


Q ss_pred             ccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCC-cCCCceEEEeccCCCCCccccccccCCCCCcceEec
Q 043667          266 LEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVA-LPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKI  344 (387)
Q Consensus       266 L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l  344 (387)
                      |++|++++|. ++.++. ...+++|+.|++++ +.++.++... -.++|+.|+++++ .+..+|..+..+++  |+.|++
T Consensus       171 L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~--L~~L~l  244 (487)
T 3oja_A          171 LEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQN--LEHFDL  244 (487)
T ss_dssp             CCEEECTTSC-CCEEEC-CCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTT--CCEEEC
T ss_pred             ccEEecCCCc-cccccc-cccCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCC--CCEEEc
Confidence            7777777643 555543 33467777777776 4566655431 1267777777764 36666666555555  777777


Q ss_pred             ccCcccc--cccCC-CCCCCccEEeec
Q 043667          345 ERCRSLT--YIAGV-QLPPSLKRLDIW  368 (387)
Q Consensus       345 ~~c~~l~--~~~~~-~~~~~L~~L~l~  368 (387)
                      +++ .+.  .++.. ...+.|+.+++.
T Consensus       245 ~~N-~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          245 RGN-GFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             TTC-CBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCC-CCcCcchHHHHHhCCCCcEEecc
Confidence            775 333  22222 334455555553

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.58  E-value=6.9e-16  Score=140.92  Aligned_cols=170  Identities=14%  Similarity=0.209  Sum_probs=97.4

Q ss_pred             CCCCcEEEEcCcCCCCCCCccCCccC--CCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceE--eCccccCCCcc
Q 043667            5 HKNLEQFCISGYRGAKFPTWFGDSSF--SNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKR--LGSEFYGKGAA   80 (387)
Q Consensus         5 ~~~L~~L~l~~~~~~~~p~~~~~~~l--~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~~   80 (387)
                      +..++.++++++...  |..+..  +  ++++.|++.++..-...+.+..+++|++|+++++. +..  ++..      .
T Consensus        46 ~~~~~~l~l~~~~~~--~~~~~~--~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~------~  114 (336)
T 2ast_B           46 ESLWQTLDLTGKNLH--PDVTGR--LLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGI------L  114 (336)
T ss_dssp             STTSSEEECTTCBCC--HHHHHH--HHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHH------H
T ss_pred             chhheeeccccccCC--HHHHHh--hhhccceEEEcCCccccccchhhccCCCCCEEEccCCC-cCHHHHHHH------H
Confidence            345777777765443  333333  4  77888888775333344456778888888888873 322  1111      2


Q ss_pred             cCCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccc-cC---CCCCCccEEEeccCcccc-----cc
Q 043667           81 IPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGT-FP---EHLPALEMLVIEACKELS-----VS  151 (387)
Q Consensus        81 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~-~~---~~~~~L~~L~l~~~~~l~-----~~  151 (387)
                      ..+++|++|++.++. +.+...    ..+..+++|++|++++|..+++. ++   ..+++|+.|++++|..+.     ..
T Consensus       115 ~~~~~L~~L~L~~~~-l~~~~~----~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  189 (336)
T 2ast_B          115 SQCSKLQNLSLEGLR-LSDPIV----NTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA  189 (336)
T ss_dssp             TTBCCCSEEECTTCB-CCHHHH----HHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred             hhCCCCCEEeCcCcc-cCHHHH----HHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH
Confidence            456778888887763 332222    23335777788887777544421 22   236677777777763322     23


Q ss_pred             ccCCC-CcceEEEcCcc-cee---EecccccCCCCcEEeccCCC
Q 043667          152 VSSLP-ALCKLKIGGCK-KVV---WRSATDHLGSQNSVVCRDTS  190 (387)
Q Consensus       152 ~~~~~-~L~~L~i~~~~-~~~---~~~~~~~~~~L~~L~l~~~~  190 (387)
                      +..++ +|++|+++++. .++   ++..+..+++|++|++++|.
T Consensus       190 ~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  233 (336)
T 2ast_B          190 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV  233 (336)
T ss_dssp             HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred             HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence            45566 77777776664 222   23334456666666666654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.57  E-value=8.2e-14  Score=127.90  Aligned_cols=215  Identities=20%  Similarity=0.186  Sum_probs=160.0

Q ss_pred             CCCcceEeeccCcccccccCC----CCCCccEEEeccCcccc----ccccCCCCcceEEEcCcccee-E-ecccccCCCC
Q 043667          112 FPKLRELHILRCSKLQGTFPE----HLPALEMLVIEACKELS----VSVSSLPALCKLKIGGCKKVV-W-RSATDHLGSQ  181 (387)
Q Consensus       112 ~~~L~~L~l~~~~~l~~~~~~----~~~~L~~L~l~~~~~l~----~~~~~~~~L~~L~i~~~~~~~-~-~~~~~~~~~L  181 (387)
                      .+++++|+++++ .++ .+|.    .+++|+.|+++++....    ..+.++++++++.+.++..+. + +..+..+++|
T Consensus        29 ~~~l~~L~Ls~N-~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L  106 (350)
T 4ay9_X           29 PRNAIELRFVLT-KLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL  106 (350)
T ss_dssp             CTTCSEEEEESC-CCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred             CCCCCEEEccCC-cCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccc
Confidence            468999999986 455 4543    47899999999986432    356788888887666554444 3 3556788999


Q ss_pred             cEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccC-CCccEEEecCCCCcccchhhHHHHHHhhhh
Q 043667          182 NSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDI-CSLKKLTIDWCPKLQSLVAEEEKDQQQQLC  260 (387)
Q Consensus       182 ~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~  260 (387)
                      ++|+++++. +..++........++..  +.+.++..+..++...+..+ ..++.|++++ +.++.++...    +. . 
T Consensus       107 ~~L~l~~n~-l~~~~~~~~~~~~~l~~--l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~----f~-~-  176 (350)
T 4ay9_X          107 QYLLISNTG-IKHLPDVHKIHSLQKVL--LDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNSA----FN-G-  176 (350)
T ss_dssp             CEEEEEEEC-CSSCCCCTTCCBSSCEE--EEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTS----ST-T-
T ss_pred             ccccccccc-cccCCchhhcccchhhh--hhhccccccccccccchhhcchhhhhhcccc-ccccCCChhh----cc-c-
Confidence            999998764 34444332334445555  88888888888777655554 4689999998 4677776542    21 1 


Q ss_pred             hccCCccEEEeccCCCCCCcccc-cCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCCCccccccccCCCCCc
Q 043667          261 ELSCRLEYLRLRYCKGLVKLPQS-SLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSL  339 (387)
Q Consensus       261 ~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L  339 (387)
                         .+|++|.+.+++.++.+|.. +..+++|+.|++++ +.++.+|..++ .+|+.|.+.++.+++.+|. +..+++  |
T Consensus       177 ---~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~-N~l~~lp~~~~-~~L~~L~~l~~~~l~~lP~-l~~l~~--L  248 (350)
T 4ay9_X          177 ---TQLDELNLSDNNNLEELPNDVFHGASGPVILDISR-TRIHSLPSYGL-ENLKKLRARSTYNLKKLPT-LEKLVA--L  248 (350)
T ss_dssp             ---EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT-SCCCCCCSSSC-TTCCEEECTTCTTCCCCCC-TTTCCS--C
T ss_pred             ---cchhHHhhccCCcccCCCHHHhccCcccchhhcCC-CCcCccChhhh-ccchHhhhccCCCcCcCCC-chhCcC--h
Confidence               68999999988889999864 68899999999998 58999987665 7899999999999999985 555777  9


Q ss_pred             ceEeccc
Q 043667          340 ETLKIER  346 (387)
Q Consensus       340 ~~L~l~~  346 (387)
                      +.+++.+
T Consensus       249 ~~l~l~~  255 (350)
T 4ay9_X          249 MEASLTY  255 (350)
T ss_dssp             CEEECSC
T ss_pred             hhCcCCC
Confidence            9999876

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.53  E-value=1.4e-13  Score=121.94  Aligned_cols=199  Identities=20%  Similarity=0.209  Sum_probs=103.0

Q ss_pred             ccCCCC-CCccEEEeccCcccc---ccccCCCCcceEEEcCccceeEec-ccccCCCCcEEeccCCCCcccccCCCCCCC
Q 043667          129 TFPEHL-PALEMLVIEACKELS---VSVSSLPALCKLKIGGCKKVVWRS-ATDHLGSQNSVVCRDTSNQVFLAGPLKPQL  203 (387)
Q Consensus       129 ~~~~~~-~~L~~L~l~~~~~l~---~~~~~~~~L~~L~i~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l  203 (387)
                      .+|..+ ++|+.|+++++..-.   ..+..+++|++|+++++....+.. .+..+++|++|+++++. +..++......+
T Consensus        21 ~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l   99 (276)
T 2z62_A           21 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGL   99 (276)
T ss_dssp             SCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTC
T ss_pred             ccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCC
Confidence            455544 368888888775322   256777888888888775444432 45667777887777653 222222224455


Q ss_pred             ccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCccc--chhhHHHHHHhhhhhccCCccEEEeccCCCCCCcc
Q 043667          204 PKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQS--LVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLP  281 (387)
Q Consensus       204 ~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~  281 (387)
                      ++|++  +.+.++. +..++...++.+++|++|+++++ .+..  ++.     .+..+    ++|++|+++++. ++.++
T Consensus       100 ~~L~~--L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~-----~~~~l----~~L~~L~Ls~N~-l~~~~  165 (276)
T 2z62_A          100 SSLQK--LVAVETN-LASLENFPIGHLKTLKELNVAHN-LIQSFKLPE-----YFSNL----TNLEHLDLSSNK-IQSIY  165 (276)
T ss_dssp             TTCCE--EECTTSC-CCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCG-----GGGGC----TTCCEEECCSSC-CCEEC
T ss_pred             ccccE--EECCCCC-ccccCchhcccCCCCCEEECcCC-ccceecCch-----hhccC----CCCCEEECCCCC-CCcCC
Confidence            55555  5555443 22233322445566666666653 2222  121     23333    566666666542 44333


Q ss_pred             c-ccCCCCCcc----EEEecCCCCceecCCCCcC-CCceEEEeccCCCCCccccc-cccCCCCCcceEeccc
Q 043667          282 Q-SSLSLSSLR----EIDIYDCSSLVSFPEVALP-SKLKKIEIRKCDALKSLPEA-WMCDTNSSLETLKIER  346 (387)
Q Consensus       282 ~-~~~~~~~L~----~L~l~~c~~l~~~~~~~~~-~~L~~L~l~~c~~l~~l~~~-~~~~~~~~L~~L~l~~  346 (387)
                      . .+..+++|+    .|++++ +.++.++...+. .+|++|+++++. ++.++.. +..+++  |++|++++
T Consensus       166 ~~~~~~l~~L~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~--L~~L~l~~  233 (276)
T 2z62_A          166 CTDLRVLHQMPLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTS--LQKIWLHT  233 (276)
T ss_dssp             GGGGHHHHTCTTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCS--CCEEECCS
T ss_pred             HHHhhhhhhccccceeeecCC-CcccccCccccCCCcccEEECCCCc-eeecCHhHhccccc--ccEEEccC
Confidence            2 232233333    555555 345555443333 456666665533 5555432 233444  66666654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.52  E-value=9.9e-13  Score=116.12  Aligned_cols=198  Identities=19%  Similarity=0.176  Sum_probs=107.6

Q ss_pred             CCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccCC
Q 043667            6 KNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPF   83 (387)
Q Consensus         6 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~   83 (387)
                      .+.+.++.++.....+|..+.    +++++|+++++ .++.++.  ++.+++|++|++.++ .+..++...     +..+
T Consensus        16 ~~~~~l~~~~~~l~~ip~~~~----~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~-----~~~l   84 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPSNIP----ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGI-----FKEL   84 (270)
T ss_dssp             TTTTEEECTTSCCSSCCSCCC----TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTT-----TSSC
T ss_pred             CCCCEEEccCCCCCccCCCCC----CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhh-----hcCC
Confidence            356788888888888876543    47888888885 5666664  778888888888887 555555443     2346


Q ss_pred             CCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCCCCCccEEEeccCccccccccCCCCcceEEE
Q 043667           84 PRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKI  163 (387)
Q Consensus        84 ~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~i  163 (387)
                      ++|++|++.++. +.....    ..+..+++|++|+++++ .+....+                  ..+..+++|++|++
T Consensus        85 ~~L~~L~l~~n~-l~~~~~----~~~~~l~~L~~L~l~~n-~l~~~~~------------------~~~~~l~~L~~L~L  140 (270)
T 2o6q_A           85 KNLETLWVTDNK-LQALPI----GVFDQLVNLAELRLDRN-QLKSLPP------------------RVFDSLTKLTYLSL  140 (270)
T ss_dssp             TTCCEEECCSSC-CCCCCT----TTTTTCSSCCEEECCSS-CCCCCCT------------------TTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCc-CCcCCH----hHcccccCCCEEECCCC-ccCeeCH------------------HHhCcCcCCCEEEC
Confidence            677777776532 222222    22234566666666654 2221111                  12344455555555


Q ss_pred             cCccceeEec-ccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCC
Q 043667          164 GGCKKVVWRS-ATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCP  242 (387)
Q Consensus       164 ~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  242 (387)
                      +++....++. .+..+++|++|+++++. +..++......+++|++  +.++++ .++.++...+..+++|+.|++++++
T Consensus       141 s~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~--L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          141 GYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKT--LKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCE--EECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCE--EECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence            5543322221 23445555555555442 22222222334445555  555544 3344444445556666666666643

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.51  E-value=7.8e-15  Score=133.90  Aligned_cols=248  Identities=13%  Similarity=0.079  Sum_probs=163.7

Q ss_pred             CCcceEeeccCcccccccCCCC--CCccEEEeccCcc--ccccccCCCCcceEEEcCcccee--EecccccCCCCcEEec
Q 043667          113 PKLRELHILRCSKLQGTFPEHL--PALEMLVIEACKE--LSVSVSSLPALCKLKIGGCKKVV--WRSATDHLGSQNSVVC  186 (387)
Q Consensus       113 ~~L~~L~l~~~~~l~~~~~~~~--~~L~~L~l~~~~~--l~~~~~~~~~L~~L~i~~~~~~~--~~~~~~~~~~L~~L~l  186 (387)
                      ..+++++++++.. .......+  ++++.+++.++..  ....+..+++|++|+++++....  ++..+..+++|++|++
T Consensus        47 ~~~~~l~l~~~~~-~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L  125 (336)
T 2ast_B           47 SLWQTLDLTGKNL-HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL  125 (336)
T ss_dssp             TTSSEEECTTCBC-CHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred             hhheeeccccccC-CHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence            3478888887532 21222223  7899999987652  22345678999999999886322  4455678899999999


Q ss_pred             cCCCCcccccCCCCCCCccccceeEEEcCCCCccc--ccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccC
Q 043667          187 RDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWK--SHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSC  264 (387)
Q Consensus       187 ~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~  264 (387)
                      ++|.-....+.. ...+++|++  +.+.+|..++.  ++. .++.+++|++|++++|..+....   ....+..+    +
T Consensus       126 ~~~~l~~~~~~~-l~~~~~L~~--L~L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~l----~  194 (336)
T 2ast_B          126 EGLRLSDPIVNT-LAKNSNLVR--LNLSGCSGFSEFALQT-LLSSCSRLDELNLSWCFDFTEKH---VQVAVAHV----S  194 (336)
T ss_dssp             TTCBCCHHHHHH-HTTCTTCSE--EECTTCBSCCHHHHHH-HHHHCTTCCEEECCCCTTCCHHH---HHHHHHHS----C
T ss_pred             cCcccCHHHHHH-HhcCCCCCE--EECCCCCCCCHHHHHH-HHhcCCCCCEEcCCCCCCcChHH---HHHHHHhc----c
Confidence            998532222222 345788888  99999866653  333 35679999999999986666421   11134555    8


Q ss_pred             -CccEEEeccCC-CCC--CcccccCCCCCccEEEecCCCCceecCCCC--cCCCceEEEeccCCCCCcc-ccccccCCCC
Q 043667          265 -RLEYLRLRYCK-GLV--KLPQSSLSLSSLREIDIYDCSSLVSFPEVA--LPSKLKKIEIRKCDALKSL-PEAWMCDTNS  337 (387)
Q Consensus       265 -~L~~L~l~~c~-~l~--~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~--~~~~L~~L~l~~c~~l~~l-~~~~~~~~~~  337 (387)
                       +|++|++++|. .++  .++..+..+++|+.|++++|..++......  ..++|++|++++|..+..- ...+..+++ 
T Consensus       195 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~-  273 (336)
T 2ast_B          195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT-  273 (336)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT-
T ss_pred             cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC-
Confidence             99999999985 453  355566789999999999987565422222  2289999999998744332 123455666 


Q ss_pred             CcceEecccCcccccccCCCCCCCccEEeecCCccccccc
Q 043667          338 SLETLKIERCRSLTYIAGVQLPPSLKRLDIWNCDNIRTLT  377 (387)
Q Consensus       338 ~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~  377 (387)
                       |++|++++|  +++-.......++..|+++ |++++.+.
T Consensus       274 -L~~L~l~~~--i~~~~~~~l~~~l~~L~l~-~n~l~~~~  309 (336)
T 2ast_B          274 -LKTLQVFGI--VPDGTLQLLKEALPHLQIN-CSHFTTIA  309 (336)
T ss_dssp             -CCEEECTTS--SCTTCHHHHHHHSTTSEES-CCCSCCTT
T ss_pred             -CCEEeccCc--cCHHHHHHHHhhCcceEEe-cccCcccc
Confidence             999999998  3321111222346777786 46666654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.50  E-value=9.8e-13  Score=116.15  Aligned_cols=194  Identities=23%  Similarity=0.309  Sum_probs=100.3

Q ss_pred             CccEEEeccCccccccccCCCCcceEEEcCccceeEe-cccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEc
Q 043667          136 ALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWR-SATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTK  214 (387)
Q Consensus       136 ~L~~L~l~~~~~l~~~~~~~~~L~~L~i~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~  214 (387)
                      ..+.++.++...........+++++|+++++....++ ..+..+++|++|+++++. +..++......+++|++  +.++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~--L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLET--LWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCE--EECC
T ss_pred             CCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCE--EECC
Confidence            3455555543321111112246777777766543333 245556777777776542 33333332345566666  6665


Q ss_pred             CCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccc-cCCCCCccEE
Q 043667          215 EQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQS-SLSLSSLREI  293 (387)
Q Consensus       215 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L  293 (387)
                      ++. +..++...+..+++|++|+++++ .+..+++.    .+..+    ++|++|+++++ .++.++.. +..+++|+.|
T Consensus        94 ~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~----~~~~l----~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L  162 (270)
T 2o6q_A           94 DNK-LQALPIGVFDQLVNLAELRLDRN-QLKSLPPR----VFDSL----TKLTYLSLGYN-ELQSLPKGVFDKLTSLKEL  162 (270)
T ss_dssp             SSC-CCCCCTTTTTTCSSCCEEECCSS-CCCCCCTT----TTTTC----TTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             CCc-CCcCCHhHcccccCCCEEECCCC-ccCeeCHH----HhCcC----cCCCEEECCCC-cCCccCHhHccCCccccee
Confidence            543 44444444555666666666653 33443332    23333    66666666664 35555543 4556666666


Q ss_pred             EecCCCCceecCCCCcC--CCceEEEeccCCCCCccccc-cccCCCCCcceEecccC
Q 043667          294 DIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPEA-WMCDTNSSLETLKIERC  347 (387)
Q Consensus       294 ~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~~-~~~~~~~~L~~L~l~~c  347 (387)
                      ++++ +.++.++...+.  ++|++|+++++ .++.++.. +..+++  |++|+++++
T Consensus       163 ~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~--L~~L~l~~N  215 (270)
T 2o6q_A          163 RLYN-NQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEK--LKMLQLQEN  215 (270)
T ss_dssp             ECCS-SCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTT--CCEEECCSS
T ss_pred             EecC-CcCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccC--CCEEEecCC
Confidence            6665 355555544333  56666666654 35555432 333444  666666653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.50  E-value=3.1e-13  Score=121.71  Aligned_cols=194  Identities=14%  Similarity=0.182  Sum_probs=122.9

Q ss_pred             CCCCccEEEeccCcccc-ccccCCCCcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeE
Q 043667          133 HLPALEMLVIEACKELS-VSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELIL  211 (387)
Q Consensus       133 ~~~~L~~L~l~~~~~l~-~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L  211 (387)
                      .+++|+.|++.++.... ..+..+++|++|+++++....+.. +..+++|++|+++++. +..++.  ...+++|++  |
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~--L  112 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSA--IAGLQSIKT--L  112 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGG--GTTCTTCCE--E
T ss_pred             HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCchh--hcCCCCCCE--E
Confidence            36788899988875322 356778889999988875544444 6777888888888764 333321  345666666  7


Q ss_pred             EEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCcc
Q 043667          212 STKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLR  291 (387)
Q Consensus       212 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~  291 (387)
                      .++++. ++.++.  +..+++|++|+++++ .+..++.      +..+    ++|++|++++| .++.++. +..+++|+
T Consensus       113 ~l~~n~-l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~------l~~l----~~L~~L~l~~n-~l~~~~~-l~~l~~L~  176 (308)
T 1h6u_A          113 DLTSTQ-ITDVTP--LAGLSNLQVLYLDLN-QITNISP------LAGL----TNLQYLSIGNA-QVSDLTP-LANLSKLT  176 (308)
T ss_dssp             ECTTSC-CCCCGG--GTTCTTCCEEECCSS-CCCCCGG------GGGC----TTCCEEECCSS-CCCCCGG-GTTCTTCC
T ss_pred             ECCCCC-CCCchh--hcCCCCCCEEECCCC-ccCcCcc------ccCC----CCccEEEccCC-cCCCChh-hcCCCCCC
Confidence            776654 333432  556777777777774 3444432      3333    77777777775 4566655 66777777


Q ss_pred             EEEecCCCCceecCCCCcCCCceEEEeccCCCCCccccccccCCCCCcceEecccCccccccc
Q 043667          292 EIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIA  354 (387)
Q Consensus       292 ~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~  354 (387)
                      .|++++ +.++.++.....++|++|++++|. +..++. +..+++  |+.|+++++ .++..+
T Consensus       177 ~L~l~~-n~l~~~~~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~--L~~L~l~~N-~i~~~~  233 (308)
T 1h6u_A          177 TLKADD-NKISDISPLASLPNLIEVHLKNNQ-ISDVSP-LANTSN--LFIVTLTNQ-TITNQP  233 (308)
T ss_dssp             EEECCS-SCCCCCGGGGGCTTCCEEECTTSC-CCBCGG-GTTCTT--CCEEEEEEE-EEECCC
T ss_pred             EEECCC-CccCcChhhcCCCCCCEEEccCCc-cCcccc-ccCCCC--CCEEEccCC-eeecCC
Confidence            777776 356655543333677777777653 566553 444555  777777774 455443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.50  E-value=2.3e-13  Score=120.37  Aligned_cols=80  Identities=13%  Similarity=0.195  Sum_probs=41.8

Q ss_pred             CCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCc
Q 043667           30 FSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGV  109 (387)
Q Consensus        30 l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i  109 (387)
                      +++|+.|++.++ .++.++.++.+++|++|++.++ .+..++ .      +..+++|++|++.++ .+.....    ..+
T Consensus        40 l~~L~~L~l~~~-~i~~~~~l~~l~~L~~L~l~~n-~l~~~~-~------l~~l~~L~~L~L~~n-~l~~~~~----~~~  105 (272)
T 3rfs_A           40 LNSIDQIIANNS-DIKSVQGIQYLPNVRYLALGGN-KLHDIS-A------LKELTNLTYLILTGN-QLQSLPN----GVF  105 (272)
T ss_dssp             HTTCCEEECTTS-CCCCCTTGGGCTTCCEEECTTS-CCCCCG-G------GTTCTTCCEEECTTS-CCCCCCT----TTT
T ss_pred             ccceeeeeeCCC-CcccccccccCCCCcEEECCCC-CCCCch-h------hcCCCCCCEEECCCC-ccCccCh----hHh
Confidence            666777777664 5566666666777777777666 333332 1      234555555555543 2222221    222


Q ss_pred             cCCCCcceEeeccC
Q 043667          110 EGFPKLRELHILRC  123 (387)
Q Consensus       110 ~~~~~L~~L~l~~~  123 (387)
                      ..+++|++|+++++
T Consensus       106 ~~l~~L~~L~L~~n  119 (272)
T 3rfs_A          106 DKLTNLKELVLVEN  119 (272)
T ss_dssp             TTCTTCCEEECTTS
T ss_pred             cCCcCCCEEECCCC
Confidence            33455555555544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.48  E-value=6e-15  Score=133.29  Aligned_cols=157  Identities=12%  Similarity=0.059  Sum_probs=102.1

Q ss_pred             CCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCccc--cccc-ccccCCCccEEEecCCCCcccchhhHHHHH
Q 043667          179 GSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWK--SHDG-LLQDICSLKKLTIDWCPKLQSLVAEEEKDQ  255 (387)
Q Consensus       179 ~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~--~~~~-~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~  255 (387)
                      ++|++|+++++.- ..++......+++|++  +.++++.....  ++.. .++.+++|++|+++++ .+..++.. ....
T Consensus       149 ~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~--L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~  223 (312)
T 1wwl_A          149 PGLKVLSIAQAHS-LNFSCEQVRVFPALST--LDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGV-CSAL  223 (312)
T ss_dssp             TTCCEEEEESCSC-CCCCTTTCCCCSSCCE--EECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHH-HHHH
T ss_pred             CCCcEEEeeCCCC-ccchHHHhccCCCCCE--EECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHH-HHHH
Confidence            5666666665432 2222222445666666  66666653322  1222 1367899999999986 45533221 0112


Q ss_pred             HhhhhhccCCccEEEeccCCCCCCcc--cccCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCCCcccccccc
Q 043667          256 QQQLCELSCRLEYLRLRYCKGLVKLP--QSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMC  333 (387)
Q Consensus       256 ~~~l~~~~~~L~~L~l~~c~~l~~~~--~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~  333 (387)
                      +..+    ++|++|+++++. ++..+  ..+..+++|+.|++++ +.++.++.... ++|++|+++++ .++.+|. +..
T Consensus       224 ~~~l----~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~-N~l~~ip~~~~-~~L~~L~Ls~N-~l~~~p~-~~~  294 (312)
T 1wwl_A          224 AAAR----VQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSF-TGLKQVPKGLP-AKLSVLDLSYN-RLDRNPS-PDE  294 (312)
T ss_dssp             HHTT----CCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTT-SCCSSCCSSCC-SEEEEEECCSS-CCCSCCC-TTT
T ss_pred             HhcC----CCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCC-CccChhhhhcc-CCceEEECCCC-CCCCChh-Hhh
Confidence            3344    899999999864 65543  3455689999999998 57888876544 89999999985 5888876 666


Q ss_pred             CCCCCcceEecccCccccc
Q 043667          334 DTNSSLETLKIERCRSLTY  352 (387)
Q Consensus       334 ~~~~~L~~L~l~~c~~l~~  352 (387)
                      +++  |++|++++. .+++
T Consensus       295 l~~--L~~L~L~~N-~l~~  310 (312)
T 1wwl_A          295 LPQ--VGNLSLKGN-PFLD  310 (312)
T ss_dssp             SCE--EEEEECTTC-TTTC
T ss_pred             CCC--CCEEeccCC-CCCC
Confidence            777  999999994 5543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.48  E-value=3e-13  Score=122.10  Aligned_cols=152  Identities=18%  Similarity=0.184  Sum_probs=109.7

Q ss_pred             ccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHH--hhhhhccCCccEEEeccCCCCCCcc
Q 043667          204 PKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQ--QQLCELSCRLEYLRLRYCKGLVKLP  281 (387)
Q Consensus       204 ~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~--~~l~~~~~~L~~L~l~~c~~l~~~~  281 (387)
                      ++|++  +.++++. +..++...++.+++|++|+++++...+.++.   ...+  ..+    ++|++|+++++. ++.++
T Consensus       149 ~~L~~--L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~~~~~l----~~L~~L~L~~N~-l~~~~  217 (312)
T 1wwl_A          149 PGLKV--LSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERGL---ISALCPLKF----PTLQVLALRNAG-METPS  217 (312)
T ss_dssp             TTCCE--EEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHHH---HHHSCTTSC----TTCCEEECTTSC-CCCHH
T ss_pred             CCCcE--EEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchHH---HHHHHhccC----CCCCEEECCCCc-CcchH
Confidence            67777  8888765 5556655578899999999999764443211   0012  444    999999999864 66443


Q ss_pred             c---c-cCCCCCccEEEecCCCCceecC-CC--CcCCCceEEEeccCCCCCccccccccCCCCCcceEecccCccccccc
Q 043667          282 Q---S-SLSLSSLREIDIYDCSSLVSFP-EV--ALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIA  354 (387)
Q Consensus       282 ~---~-~~~~~~L~~L~l~~c~~l~~~~-~~--~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~  354 (387)
                      .   . +..+++|+.|++++ +.++..+ ..  ...++|++|+++++. ++.+|..+.  .+  |++|+++++ +++.+|
T Consensus       218 ~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~--L~~L~Ls~N-~l~~~p  290 (312)
T 1wwl_A          218 GVCSALAAARVQLQGLDLSH-NSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLP--AK--LSVLDLSYN-RLDRNP  290 (312)
T ss_dssp             HHHHHHHHTTCCCSEEECTT-SCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCC--SE--EEEEECCSS-CCCSCC
T ss_pred             HHHHHHHhcCCCCCEEECCC-CcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhcc--CC--ceEEECCCC-CCCCCh
Confidence            2   2 34779999999998 4666644 22  223899999999854 889988754  55  999999995 888886


Q ss_pred             CCCCCCCccEEeecCCcccc
Q 043667          355 GVQLPPSLKRLDIWNCDNIR  374 (387)
Q Consensus       355 ~~~~~~~L~~L~l~~C~~l~  374 (387)
                      ....+++|++|++++. .++
T Consensus       291 ~~~~l~~L~~L~L~~N-~l~  309 (312)
T 1wwl_A          291 SPDELPQVGNLSLKGN-PFL  309 (312)
T ss_dssp             CTTTSCEEEEEECTTC-TTT
T ss_pred             hHhhCCCCCEEeccCC-CCC
Confidence            5566799999999984 444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.48  E-value=1.1e-12  Score=116.95  Aligned_cols=67  Identities=24%  Similarity=0.187  Sum_probs=35.2

Q ss_pred             cccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecC
Q 043667          221 KSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYD  297 (387)
Q Consensus       221 ~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~  297 (387)
                      .++...+..+++|++|+++++ .+..++..    .+..+    ++|++|+++++ .++.+|..+...++|+.+++.+
T Consensus       138 ~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~----~~~~l----~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~  204 (290)
T 1p9a_G          138 TLPPGLLTPTPKLEKLSLANN-NLTELPAG----LLNGL----ENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHG  204 (290)
T ss_dssp             CCCTTTTTTCTTCCEEECTTS-CCSCCCTT----TTTTC----TTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCS
T ss_pred             ccChhhcccccCCCEEECCCC-cCCccCHH----HhcCc----CCCCEEECCCC-cCCccChhhcccccCCeEEeCC
Confidence            334443445566666666653 34444432    23333    56666666553 3555665555555666666655

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.47  E-value=1.1e-12  Score=116.12  Aligned_cols=209  Identities=18%  Similarity=0.144  Sum_probs=133.6

Q ss_pred             cCcCCCCCCCccCCccCCCccEEEeecCCCCCCCC--CcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeec
Q 043667           14 SGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLP--SVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRF   91 (387)
Q Consensus        14 ~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l   91 (387)
                      .+.....+|..+.    ++|++|+++++ .++.++  .++++++|++|+++++ .+..++...     +..+++|++|++
T Consensus        15 ~~~~l~~ip~~l~----~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~-----~~~l~~L~~L~L   83 (276)
T 2z62_A           15 MELNFYKIPDNLP----FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGA-----YQSLSHLSTLIL   83 (276)
T ss_dssp             TTSCCSSCCSSSC----TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTC-CCCEECTTT-----TTTCTTCCEEEC
T ss_pred             cCCCccccCCCCC----CCccEEECCCC-cccccCHhHhccccCCcEEECCCC-cCCccCHHH-----ccCCcCCCEEEC
Confidence            3444555665432    46888888775 566665  3777888888888887 566665433     245778888888


Q ss_pred             cccCCccccccCcCCCCccCCCCcceEeeccCccccccc---CCCCCCccEEEeccCcc----ccccccCCCCcceEEEc
Q 043667           92 DAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTF---PEHLPALEMLVIEACKE----LSVSVSSLPALCKLKIG  164 (387)
Q Consensus        92 ~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~---~~~~~~L~~L~l~~~~~----l~~~~~~~~~L~~L~i~  164 (387)
                      +++. +.....    ..+..+++|++|+++++. +.+..   ...+++|+.|+++++..    ++..+..+++|++|+++
T Consensus        84 ~~n~-l~~~~~----~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls  157 (276)
T 2z62_A           84 TGNP-IQSLAL----GAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS  157 (276)
T ss_dssp             TTCC-CCEECT----TTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred             CCCc-cCccCh----hhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECC
Confidence            7643 333332    344467788888887663 32111   22467888888877652    33567788899999998


Q ss_pred             CccceeEe-cccccCCCCc----EEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEec
Q 043667          165 GCKKVVWR-SATDHLGSQN----SVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTID  239 (387)
Q Consensus       165 ~~~~~~~~-~~~~~~~~L~----~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  239 (387)
                      ++....+. ..+..+++|+    +|+++++. +..++... ....+|++  +.++++. ++.++...++.+++|++|+++
T Consensus       158 ~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~-l~~~~~~~-~~~~~L~~--L~L~~n~-l~~~~~~~~~~l~~L~~L~l~  232 (276)
T 2z62_A          158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGA-FKEIRLKE--LALDTNQ-LKSVPDGIFDRLTSLQKIWLH  232 (276)
T ss_dssp             SSCCCEECGGGGHHHHTCTTCCEEEECCSSC-CCEECTTS-SCSCCEEE--EECCSSC-CSCCCTTTTTTCCSCCEEECC
T ss_pred             CCCCCcCCHHHhhhhhhccccceeeecCCCc-ccccCccc-cCCCcccE--EECCCCc-eeecCHhHhcccccccEEEcc
Confidence            87655533 3344445555    77887653 33333321 22336777  8888765 667777767889999999999


Q ss_pred             CCCCc
Q 043667          240 WCPKL  244 (387)
Q Consensus       240 ~~~~l  244 (387)
                      +++-.
T Consensus       233 ~N~~~  237 (276)
T 2z62_A          233 TNPWD  237 (276)
T ss_dssp             SSCBC
T ss_pred             CCccc
Confidence            75443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.46  E-value=3.5e-12  Score=113.74  Aligned_cols=193  Identities=16%  Similarity=0.130  Sum_probs=123.5

Q ss_pred             CCCCcceEeeccCcccccccCCC-CCCccEEEeccCccc---cccccCCCCcceEEEcCccceeEecccccCCCCcEEec
Q 043667          111 GFPKLRELHILRCSKLQGTFPEH-LPALEMLVIEACKEL---SVSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVC  186 (387)
Q Consensus       111 ~~~~L~~L~l~~~~~l~~~~~~~-~~~L~~L~l~~~~~l---~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l  186 (387)
                      .+++++++++++. .++ .+|.. .++++.|+++++..-   ...+..+++|++|+++++....+... ..+++|++|++
T Consensus         8 ~l~~l~~l~~~~~-~l~-~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~L   84 (290)
T 1p9a_G            8 KVASHLEVNCDKR-NLT-ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDL   84 (290)
T ss_dssp             CSTTCCEEECTTS-CCS-SCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEEC
T ss_pred             ccCCccEEECCCC-CCC-cCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEEC
Confidence            3556666666554 333 34433 345666766665422   13567778888888887654444433 56788888888


Q ss_pred             cCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCc
Q 043667          187 RDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRL  266 (387)
Q Consensus       187 ~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L  266 (387)
                      +++. +..++.. ...+++|++  |.++++ .++.++...++.+++|++|+++++ .+..+++.    .+..+    ++|
T Consensus        85 s~N~-l~~l~~~-~~~l~~L~~--L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~----~~~~l----~~L  150 (290)
T 1p9a_G           85 SHNQ-LQSLPLL-GQTLPALTV--LDVSFN-RLTSLPLGALRGLGELQELYLKGN-ELKTLPPG----LLTPT----PKL  150 (290)
T ss_dssp             CSSC-CSSCCCC-TTTCTTCCE--EECCSS-CCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTT----TTTTC----TTC
T ss_pred             CCCc-CCcCchh-hccCCCCCE--EECCCC-cCcccCHHHHcCCCCCCEEECCCC-CCCccChh----hcccc----cCC
Confidence            8653 3344433 456667777  777664 355566555677888888888874 55555543    24444    788


Q ss_pred             cEEEeccCCCCCCcccc-cCCCCCccEEEecCCCCceecCCCCcC-CCceEEEeccCC
Q 043667          267 EYLRLRYCKGLVKLPQS-SLSLSSLREIDIYDCSSLVSFPEVALP-SKLKKIEIRKCD  322 (387)
Q Consensus       267 ~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~-~~L~~L~l~~c~  322 (387)
                      +.|+++++ .++.++.. +..+++|+.|++++ +.++.++...+. ++|+.+++.+++
T Consensus       151 ~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          151 EKLSLANN-NLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CEEECTTS-CCSCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             CEEECCCC-cCCccCHHHhcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCC
Confidence            88888774 46777754 45678888888887 577777765444 678888887654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.45  E-value=8.7e-13  Score=116.61  Aligned_cols=154  Identities=25%  Similarity=0.339  Sum_probs=72.5

Q ss_pred             ccCCCCcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCC
Q 043667          152 VSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDIC  231 (387)
Q Consensus       152 ~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~  231 (387)
                      +..+++|++|+++++....+ ..+..+++|++|+++++. +..++......+++|++  +.+.++. ++.++...++.++
T Consensus        59 l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~--L~L~~n~-l~~~~~~~~~~l~  133 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKE--LVLVENQ-LQSLPDGVFDKLT  133 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCE--EECTTSC-CCCCCTTTTTTCT
T ss_pred             cccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCE--EECCCCc-CCccCHHHhccCC
Confidence            44555666666655432222 234455666666666542 22222221233444444  5554432 3333333344555


Q ss_pred             CccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccc-cCCCCCccEEEecCCCCceecCCCCcC
Q 043667          232 SLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQS-SLSLSSLREIDIYDCSSLVSFPEVALP  310 (387)
Q Consensus       232 ~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~  310 (387)
                      +|++|+++++ .+..+++.    .+..+    ++|++|++++| .++.++.. +..+++|+.|++++ +.++.++...+.
T Consensus       134 ~L~~L~L~~n-~l~~~~~~----~~~~l----~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~  202 (272)
T 3rfs_A          134 NLTYLNLAHN-QLQSLPKG----VFDKL----TNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQ-NQLKSVPDGVFD  202 (272)
T ss_dssp             TCCEEECCSS-CCCCCCTT----TTTTC----TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTT
T ss_pred             CCCEEECCCC-ccCccCHH----HhccC----ccCCEEECCCC-CcCccCHHHhcCCccCCEEECCC-CcCCccCHHHHh
Confidence            6666666654 33333332    12333    56666666554 24444432 34555666666655 244444433222


Q ss_pred             --CCceEEEeccC
Q 043667          311 --SKLKKIEIRKC  321 (387)
Q Consensus       311 --~~L~~L~l~~c  321 (387)
                        ++|++|+++++
T Consensus       203 ~l~~L~~L~l~~N  215 (272)
T 3rfs_A          203 RLTSLQYIWLHDN  215 (272)
T ss_dssp             TCTTCCEEECCSS
T ss_pred             CCcCCCEEEccCC
Confidence              55566655554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.44  E-value=1.7e-12  Score=116.84  Aligned_cols=193  Identities=17%  Similarity=0.183  Sum_probs=142.6

Q ss_pred             CCCCcceEeeccCcccccccC--CCCCCccEEEeccCcccc-ccccCCCCcceEEEcCccceeEecccccCCCCcEEecc
Q 043667          111 GFPKLRELHILRCSKLQGTFP--EHLPALEMLVIEACKELS-VSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCR  187 (387)
Q Consensus       111 ~~~~L~~L~l~~~~~l~~~~~--~~~~~L~~L~l~~~~~l~-~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~  187 (387)
                      .+++|+.|+++++ .+. .++  ..+++|+.|+++++.... ..+..+++|++|+++++....+ ..+..+++|++|+++
T Consensus        39 ~l~~L~~L~l~~~-~i~-~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           39 DLDGITTLSAFGT-GVT-TIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLT  115 (308)
T ss_dssp             HHHTCCEEECTTS-CCC-CCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC-GGGTTCTTCCEEECT
T ss_pred             HcCCcCEEEeeCC-Ccc-CchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc-hhhcCCCCCCEEECC
Confidence            4789999999887 333 333  347899999999886322 2388899999999998864443 456778999999999


Q ss_pred             CCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCcc
Q 043667          188 DTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLE  267 (387)
Q Consensus       188 ~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~  267 (387)
                      ++. +..++.  ...+++|++  +.++++. +..++.  ++.+++|++|+++++ .+..++.      +..+    ++|+
T Consensus       116 ~n~-l~~~~~--l~~l~~L~~--L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~------l~~l----~~L~  176 (308)
T 1h6u_A          116 STQ-ITDVTP--LAGLSNLQV--LYLDLNQ-ITNISP--LAGLTNLQYLSIGNA-QVSDLTP------LANL----SKLT  176 (308)
T ss_dssp             TSC-CCCCGG--GTTCTTCCE--EECCSSC-CCCCGG--GGGCTTCCEEECCSS-CCCCCGG------GTTC----TTCC
T ss_pred             CCC-CCCchh--hcCCCCCCE--EECCCCc-cCcCcc--ccCCCCccEEEccCC-cCCCChh------hcCC----CCCC
Confidence            875 333332  467788888  8888764 444443  668899999999986 5555543      4444    8999


Q ss_pred             EEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCCCcccc
Q 043667          268 YLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPE  329 (387)
Q Consensus       268 ~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~  329 (387)
                      +|+++++ .++.++. +..+++|+.|++++ +.++.++.....++|+.|++++++ +...|.
T Consensus       177 ~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~-N~l~~~~~l~~l~~L~~L~l~~N~-i~~~~~  234 (308)
T 1h6u_A          177 TLKADDN-KISDISP-LASLPNLIEVHLKN-NQISDVSPLANTSNLFIVTLTNQT-ITNQPV  234 (308)
T ss_dssp             EEECCSS-CCCCCGG-GGGCTTCCEEECTT-SCCCBCGGGTTCTTCCEEEEEEEE-EECCCE
T ss_pred             EEECCCC-ccCcChh-hcCCCCCCEEEccC-CccCccccccCCCCCCEEEccCCe-eecCCe
Confidence            9999986 4777775 77899999999998 477777644444899999999865 665554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.39  E-value=9.9e-13  Score=118.55  Aligned_cols=149  Identities=17%  Similarity=0.186  Sum_probs=73.9

Q ss_pred             CccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCccc--chhhHHHHHHhhhhhccCCccEEEeccCCCCCCc
Q 043667          203 LPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQS--LVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKL  280 (387)
Q Consensus       203 l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~  280 (387)
                      +++|++  +.++++. +..++...++.+++|++|+++++.-...  ++...   .+..+    ++|++|++++| .++.+
T Consensus       144 ~~~L~~--L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---~~~~l----~~L~~L~Ls~N-~l~~l  212 (310)
T 4glp_A          144 KPGLKV--LSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAAL---CPHKF----PAIQNLALRNT-GMETP  212 (310)
T ss_dssp             CSCCCE--EEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTS---CTTSS----CCCCSCBCCSS-CCCCH
T ss_pred             ccCCCE--EEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHHH---hhhcC----CCCCEEECCCC-CCCch
Confidence            344444  4444433 2333333345566666666666432221  11000   01222    56666666654 34443


Q ss_pred             ccc----cCCCCCccEEEecCCCCceec-CCC--Cc--CCCceEEEeccCCCCCccccccccCCCCCcceEecccCcccc
Q 043667          281 PQS----SLSLSSLREIDIYDCSSLVSF-PEV--AL--PSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLT  351 (387)
Q Consensus       281 ~~~----~~~~~~L~~L~l~~c~~l~~~-~~~--~~--~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~  351 (387)
                      +..    +..+++|+.|++++ +.++.+ |..  .+  +++|++|++++| .++.+|..+  .++  |++|+++++ +++
T Consensus       213 ~~~~~~l~~~l~~L~~L~Ls~-N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~--~~~--L~~L~Ls~N-~l~  285 (310)
T 4glp_A          213 TGVCAALAAAGVQPHSLDLSH-NSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGL--PAK--LRVLDLSSN-RLN  285 (310)
T ss_dssp             HHHHHHHHHHTCCCSSEECTT-SCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCC--CSC--CSCEECCSC-CCC
T ss_pred             HHHHHHHHhcCCCCCEEECCC-CCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhh--cCC--CCEEECCCC-cCC
Confidence            331    23456666666665 344443 211  11  156777777663 356666554  234  777777774 566


Q ss_pred             cccCCCCCCCccEEeecC
Q 043667          352 YIAGVQLPPSLKRLDIWN  369 (387)
Q Consensus       352 ~~~~~~~~~~L~~L~l~~  369 (387)
                      .++....+++|++|++++
T Consensus       286 ~~~~~~~l~~L~~L~L~~  303 (310)
T 4glp_A          286 RAPQPDELPEVDNLTLDG  303 (310)
T ss_dssp             SCCCTTSCCCCSCEECSS
T ss_pred             CCchhhhCCCccEEECcC
Confidence            654444556777777776

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.32  E-value=1.4e-11  Score=111.00  Aligned_cols=201  Identities=13%  Similarity=0.081  Sum_probs=124.6

Q ss_pred             CCccEEEeccCccc---cccc--cCCCCcceEEEcCccceeEe-----cccccCCCCcEEeccCCCCcccccCCCCCCCc
Q 043667          135 PALEMLVIEACKEL---SVSV--SSLPALCKLKIGGCKKVVWR-----SATDHLGSQNSVVCRDTSNQVFLAGPLKPQLP  204 (387)
Q Consensus       135 ~~L~~L~l~~~~~l---~~~~--~~~~~L~~L~i~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~  204 (387)
                      ++|++|+++++...   +..+  ..+++|++|+++++......     ..+..+++|++|+++++.- ...+......++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~~~l~  169 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS-PAFSCEQVRAFP  169 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS-CCCCTTSCCCCT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc-chhhHHHhccCC
Confidence            34555555554311   1222  55666666666665432210     1123467777777776543 333322245667


Q ss_pred             cccceeEEEcCCCCccc--ccc-cccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCc-
Q 043667          205 KLEELILSTKEQTYIWK--SHD-GLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKL-  280 (387)
Q Consensus       205 ~L~~l~L~l~~~~~~~~--~~~-~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~-  280 (387)
                      +|++  |.++++.....  ++. ..++.+++|++|++++| .++.++... ...+..+    ++|++|+++++. ++.+ 
T Consensus       170 ~L~~--L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~-~~l~~~l----~~L~~L~Ls~N~-l~~~~  240 (310)
T 4glp_A          170 ALTS--LDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVC-AALAAAG----VQPHSLDLSHNS-LRATV  240 (310)
T ss_dssp             TCCE--EECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHH-HHHHHHT----CCCSSEECTTSC-CCCCC
T ss_pred             CCCE--EECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHH-HHHHhcC----CCCCEEECCCCC-CCccc
Confidence            7777  77777654321  222 22357889999999986 555444321 1113444    999999999865 6655 


Q ss_pred             ccccCCC---CCccEEEecCCCCceecCCCCcCCCceEEEeccCCCCCccccccccCCCCCcceEecccCccccc
Q 043667          281 PQSSLSL---SSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTY  352 (387)
Q Consensus       281 ~~~~~~~---~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~  352 (387)
                      |..+..+   ++|+.|++++ +.++.+|... +++|++|+++++ .++.+|. +..+++  |+.|+++++ .+++
T Consensus       241 p~~~~~~~~~~~L~~L~Ls~-N~l~~lp~~~-~~~L~~L~Ls~N-~l~~~~~-~~~l~~--L~~L~L~~N-~l~~  308 (310)
T 4glp_A          241 NPSAPRCMWSSALNSLNLSF-AGLEQVPKGL-PAKLRVLDLSSN-RLNRAPQ-PDELPE--VDNLTLDGN-PFLV  308 (310)
T ss_dssp             CSCCSSCCCCTTCCCEECCS-SCCCSCCSCC-CSCCSCEECCSC-CCCSCCC-TTSCCC--CSCEECSST-TTSC
T ss_pred             hhhHHhccCcCcCCEEECCC-CCCCchhhhh-cCCCCEEECCCC-cCCCCch-hhhCCC--ccEEECcCC-CCCC
Confidence            6655555   7999999998 5788887644 489999999985 4777765 444566  999999994 5543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.31  E-value=2e-11  Score=108.95  Aligned_cols=99  Identities=17%  Similarity=0.184  Sum_probs=52.3

Q ss_pred             CCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCC
Q 043667            6 KNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPR   85 (387)
Q Consensus         6 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~   85 (387)
                      ++|++|+++++.+..++. +..  +++|++|++++| .++.++.++.+++|++|+++++ .++.++.       +..+++
T Consensus        46 ~~L~~L~l~~~~i~~~~~-~~~--l~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~-------l~~l~~  113 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSVQG-IQY--LPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDEN-KVKDLSS-------LKDLKK  113 (291)
T ss_dssp             HTCCEEECTTSCCCCCTT-GGG--CTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCGGG-------GTTCTT
T ss_pred             CcccEEEccCCCcccChh-Hhc--CCCCCEEEccCC-ccCCCcccccCCCCCEEECCCC-cCCCChh-------hccCCC
Confidence            456666666666555543 333  666666666664 4555555666666666666666 3443322       234566


Q ss_pred             cceeeccccCCccccccCcCCCCccCCCCcceEeeccC
Q 043667           86 LETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRC  123 (387)
Q Consensus        86 L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~  123 (387)
                      |++|+++++. +...      ..+..+++|+.|+++++
T Consensus       114 L~~L~L~~n~-i~~~------~~l~~l~~L~~L~l~~n  144 (291)
T 1h6t_A          114 LKSLSLEHNG-ISDI------NGLVHLPQLESLYLGNN  144 (291)
T ss_dssp             CCEEECTTSC-CCCC------GGGGGCTTCCEEECCSS
T ss_pred             CCEEECCCCc-CCCC------hhhcCCCCCCEEEccCC
Confidence            6666665532 2211      12223555555555554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.30  E-value=1.9e-11  Score=102.49  Aligned_cols=55  Identities=16%  Similarity=0.231  Sum_probs=29.3

Q ss_pred             CCCccEEEeccCcccc--ccccCCCCcceEEEcCccceeEecccccCCCCcEEeccCC
Q 043667          134 LPALEMLVIEACKELS--VSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDT  189 (387)
Q Consensus       134 ~~~L~~L~l~~~~~l~--~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~  189 (387)
                      +++|+.|++++|..+.  ..+..+++|++|+++++....+. .+..+++|++|++++.
T Consensus       135 l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          135 LPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             CSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC
T ss_pred             CCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCc
Confidence            4555555555543111  24555666666666665433322 4455667777776654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.28  E-value=1e-10  Score=101.96  Aligned_cols=171  Identities=21%  Similarity=0.208  Sum_probs=86.7

Q ss_pred             CcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEE
Q 043667          157 ALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKL  236 (387)
Q Consensus       157 ~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L  236 (387)
                      +.+.++..+.....++..+  .+++++|+++++. +..++......+++|++  |.++++ .+..++...+..+++|++|
T Consensus        15 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~--L~L~~n-~l~~~~~~~~~~l~~L~~L   88 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGI--PADTEKLDLQSTG-LATLSDATFRGLTKLTW--LNLDYN-QLQTLSAGVFDDLTELGTL   88 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCC--CTTCCEEECTTSC-CCCCCTTTTTTCTTCCE--EECTTS-CCCCCCTTTTTTCTTCCEE
T ss_pred             CCeEEecCCCCccccCCCC--CCCCCEEEccCCC-cCccCHhHhcCcccCCE--EECCCC-cCCccCHhHhccCCcCCEE
Confidence            3455666554433333322  2567777776543 22232222445555555  666554 2333444434556666666


Q ss_pred             EecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccc-cCCCCCccEEEecCCCCceecCCCCcC--CCc
Q 043667          237 TIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQS-SLSLSSLREIDIYDCSSLVSFPEVALP--SKL  313 (387)
Q Consensus       237 ~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L  313 (387)
                      +++++ .+..+++.    .+..+    ++|++|+++++ .++.++.. +..+++|+.|++++ +.++.++...+.  ++|
T Consensus        89 ~L~~n-~l~~~~~~----~~~~l----~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L  157 (251)
T 3m19_A           89 GLANN-QLASLPLG----VFDHL----TQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNL  157 (251)
T ss_dssp             ECTTS-CCCCCCTT----TTTTC----TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTC
T ss_pred             ECCCC-cccccChh----Hhccc----CCCCEEEcCCC-cCCCcChhHhccCCcccEEECcC-CcCCccCHHHcCcCcCC
Confidence            66653 34444332    23333    66666666653 35555543 34566666666665 355555543332  566


Q ss_pred             eEEEeccCCCCCcccc-ccccCCCCCcceEecccC
Q 043667          314 KKIEIRKCDALKSLPE-AWMCDTNSSLETLKIERC  347 (387)
Q Consensus       314 ~~L~l~~c~~l~~l~~-~~~~~~~~~L~~L~l~~c  347 (387)
                      ++|+++++ .++.++. .+..+++  |++|+++++
T Consensus       158 ~~L~L~~N-~l~~~~~~~~~~l~~--L~~L~l~~N  189 (251)
T 3m19_A          158 QTLSLSTN-QLQSVPHGAFDRLGK--LQTITLFGN  189 (251)
T ss_dssp             CEEECCSS-CCSCCCTTTTTTCTT--CCEEECCSC
T ss_pred             CEEECCCC-cCCccCHHHHhCCCC--CCEEEeeCC
Confidence            66666653 3444443 3333444  666666663

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.28  E-value=4e-11  Score=106.95  Aligned_cols=129  Identities=19%  Similarity=0.200  Sum_probs=82.6

Q ss_pred             CCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcc
Q 043667          202 QLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLP  281 (387)
Q Consensus       202 ~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~  281 (387)
                      .+++|++  +.++++. ++.++.  ++.+++|++|+++++ .+..++      .+..+    ++|+.|++++| .++.+ 
T Consensus        88 ~l~~L~~--L~l~~n~-l~~~~~--l~~l~~L~~L~L~~n-~i~~~~------~l~~l----~~L~~L~l~~n-~l~~~-  149 (291)
T 1h6t_A           88 NLKNLGW--LFLDENK-VKDLSS--LKDLKKLKSLSLEHN-GISDIN------GLVHL----PQLESLYLGNN-KITDI-  149 (291)
T ss_dssp             TCTTCCE--EECCSSC-CCCGGG--GTTCTTCCEEECTTS-CCCCCG------GGGGC----TTCCEEECCSS-CCCCC-
T ss_pred             cCCCCCE--EECCCCc-CCCChh--hccCCCCCEEECCCC-cCCCCh------hhcCC----CCCCEEEccCC-cCCcc-
Confidence            3444444  4444432 333332  567788888888875 455442      24444    88888888875 46666 


Q ss_pred             cccCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCCCccccccccCCCCCcceEecccCccccccc
Q 043667          282 QSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIA  354 (387)
Q Consensus       282 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~  354 (387)
                      ..+..+++|+.|++++| .++.++.....++|++|++++| .+++++. +..+++  |+.|+++++ .++..+
T Consensus       150 ~~l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~L~~N-~i~~l~~-l~~l~~--L~~L~l~~n-~i~~~~  216 (291)
T 1h6t_A          150 TVLSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLSKN-HISDLRA-LAGLKN--LDVLELFSQ-ECLNKP  216 (291)
T ss_dssp             GGGGGCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCBCGG-GTTCTT--CSEEEEEEE-EEECCC
T ss_pred             hhhccCCCCCEEEccCC-ccccchhhcCCCccCEEECCCC-cCCCChh-hccCCC--CCEEECcCC-cccCCc
Confidence            45677888888888874 6666654333378888888875 4777764 555666  888888885 454443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.26  E-value=2.4e-12  Score=119.69  Aligned_cols=225  Identities=12%  Similarity=0.118  Sum_probs=108.1

Q ss_pred             CCCCcceEeeccCcccccc----c---CCCCCCccEEEeccCc--ccc-----------ccccCCCCcceEEEcCcccee
Q 043667          111 GFPKLRELHILRCSKLQGT----F---PEHLPALEMLVIEACK--ELS-----------VSVSSLPALCKLKIGGCKKVV  170 (387)
Q Consensus       111 ~~~~L~~L~l~~~~~l~~~----~---~~~~~~L~~L~l~~~~--~l~-----------~~~~~~~~L~~L~i~~~~~~~  170 (387)
                      .+++|+.|+++++ .+...    +   ...+++|+.|++++|.  .+.           ..+..+++|++|+++++....
T Consensus        30 ~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  108 (386)
T 2ca6_A           30 EDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP  108 (386)
T ss_dssp             HCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred             cCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence            4677888888876 33211    1   2246677777777652  111           113456677777776654322


Q ss_pred             -----EecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccC---------CCccEE
Q 043667          171 -----WRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDI---------CSLKKL  236 (387)
Q Consensus       171 -----~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~---------~~L~~L  236 (387)
                           ++..+..+++|++|++++|.--...+                       ..++.. +..+         ++|++|
T Consensus       109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~-----------------------~~l~~~-l~~l~~~~~~~~~~~L~~L  164 (386)
T 2ca6_A          109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG-----------------------AKIARA-LQELAVNKKAKNAPPLRSI  164 (386)
T ss_dssp             TTHHHHHHHHHHCTTCCEEECCSSCCHHHHH-----------------------HHHHHH-HHHHHHHHHHHTCCCCCEE
T ss_pred             HHHHHHHHHHHhCCCCCEEECcCCCCCHHHH-----------------------HHHHHH-HHHHhhhhhcccCCCCcEE
Confidence                 22334455666666666543110000                       001100 1122         566666


Q ss_pred             EecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCC------cccccCCCCCccEEEecCCCCc-----eecC
Q 043667          237 TIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVK------LPQSSLSLSSLREIDIYDCSSL-----VSFP  305 (387)
Q Consensus       237 ~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~------~~~~~~~~~~L~~L~l~~c~~l-----~~~~  305 (387)
                      ++++|. +.......+...+...    ++|++|++++|. ++.      ++..+..+++|+.|++++| .+     ..++
T Consensus       165 ~L~~n~-l~~~~~~~l~~~l~~~----~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~  237 (386)
T 2ca6_A          165 ICGRNR-LENGSMKEWAKTFQSH----RLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALA  237 (386)
T ss_dssp             ECCSSC-CTGGGHHHHHHHHHHC----TTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHH
T ss_pred             ECCCCC-CCcHHHHHHHHHHHhC----CCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHH
Confidence            666643 2211111111233333    666666666653 331      2224556666666666664 34     2222


Q ss_pred             CC-CcCCCceEEEeccCCCCCc-----ccccccc--CCCCCcceEecccCccccc-----ccCC--CCCCCccEEeecCC
Q 043667          306 EV-ALPSKLKKIEIRKCDALKS-----LPEAWMC--DTNSSLETLKIERCRSLTY-----IAGV--QLPPSLKRLDIWNC  370 (387)
Q Consensus       306 ~~-~~~~~L~~L~l~~c~~l~~-----l~~~~~~--~~~~~L~~L~l~~c~~l~~-----~~~~--~~~~~L~~L~l~~C  370 (387)
                      .. ...++|++|++++|. ++.     ++..+..  .++  |++|++++| .++.     ++..  ..+++|++|++++|
T Consensus       238 ~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~--L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N  313 (386)
T 2ca6_A          238 IALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIG--LQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGN  313 (386)
T ss_dssp             HHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCC--CCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             HHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCC--eEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence            11 112566677766654 433     2333322  334  777777664 4544     4432  22466777777664


Q ss_pred             c
Q 043667          371 D  371 (387)
Q Consensus       371 ~  371 (387)
                      +
T Consensus       314 ~  314 (386)
T 2ca6_A          314 R  314 (386)
T ss_dssp             B
T ss_pred             c
Confidence            4

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.23  E-value=1e-12  Score=122.32  Aligned_cols=34  Identities=6%  Similarity=-0.014  Sum_probs=15.9

Q ss_pred             CCCccEEEeecCCCCCCC-----C-CcCCcCCCcEEEecCC
Q 043667           30 FSNLVTLKFEYCGMCPTL-----P-SVGQLPSLKHLAVCGM   64 (387)
Q Consensus        30 l~~L~~L~l~~c~~~~~l-----~-~~~~l~~L~~L~l~~~   64 (387)
                      +++|++|++++| .++..     + .+..+++|++|+++++
T Consensus        31 ~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~   70 (386)
T 2ca6_A           31 DDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDI   70 (386)
T ss_dssp             CSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSC
T ss_pred             CCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCccc
Confidence            455555555554 22221     1 1344555555555554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.23  E-value=8.1e-11  Score=98.58  Aligned_cols=83  Identities=17%  Similarity=0.235  Sum_probs=40.2

Q ss_pred             cccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCC
Q 043667          227 LQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPE  306 (387)
Q Consensus       227 l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  306 (387)
                      ++.+++|++|+++++.-....+.     .+..+    ++|++|++++|..+++++ .+..+++|+.|++++| .++.++.
T Consensus       108 l~~l~~L~~L~Ls~n~i~~~~~~-----~l~~l----~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~  176 (197)
T 4ezg_A          108 LSGLTSLTLLDISHSAHDDSILT-----KINTL----PKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRG  176 (197)
T ss_dssp             CTTCTTCCEEECCSSBCBGGGHH-----HHTTC----SSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTT
T ss_pred             hcCCCCCCEEEecCCccCcHhHH-----HHhhC----CCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHH
Confidence            44556666666665422211211     23333    566666666554455554 3455556666666553 3444432


Q ss_pred             CCcCCCceEEEecc
Q 043667          307 VALPSKLKKIEIRK  320 (387)
Q Consensus       307 ~~~~~~L~~L~l~~  320 (387)
                      ....++|++|++++
T Consensus       177 l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          177 IEDFPKLNQLYAFS  190 (197)
T ss_dssp             GGGCSSCCEEEECB
T ss_pred             hccCCCCCEEEeeC
Confidence            22225555555554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.22  E-value=6.8e-11  Score=115.81  Aligned_cols=165  Identities=16%  Similarity=0.157  Sum_probs=119.6

Q ss_pred             CCCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCC
Q 043667            5 HKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFP   84 (387)
Q Consensus         5 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~   84 (387)
                      +++|++|.++++.+..+|. +..  +++|+.|++++| .+..+++++.+++|+.|+++++ .+..++.       +..++
T Consensus        42 L~~L~~L~l~~n~i~~l~~-l~~--l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N-~l~~l~~-------l~~l~  109 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQG-IQY--LPNVTKLFLNGN-KLTDIKPLTNLKNLGWLFLDEN-KIKDLSS-------LKDLK  109 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCTT-GGG--CTTCCEEECTTS-CCCCCGGGGGCTTCCEEECCSS-CCCCCTT-------STTCT
T ss_pred             CCCCCEEECcCCCCCCChH-Hcc--CCCCCEEEeeCC-CCCCChhhccCCCCCEEECcCC-CCCCChh-------hccCC
Confidence            4688889999888887774 454  889999999886 6777777889999999999988 5665542       45688


Q ss_pred             CcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccc-cCCCCCCccEEEeccCcccc-ccccCCCCcceEE
Q 043667           85 RLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGT-FPEHLPALEMLVIEACKELS-VSVSSLPALCKLK  162 (387)
Q Consensus        85 ~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~-~~~~~~~L~~L~l~~~~~l~-~~~~~~~~L~~L~  162 (387)
                      +|++|+++++. +...      ..+..+++|+.|+++++ .+.+. ....+++|+.|+++++..-. ..+..+++|+.|+
T Consensus       110 ~L~~L~Ls~N~-l~~l------~~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~  181 (605)
T 1m9s_A          110 KLKSLSLEHNG-ISDI------NGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY  181 (605)
T ss_dssp             TCCEEECTTSC-CCCC------GGGGGCTTCSEEECCSS-CCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred             CCCEEEecCCC-CCCC------ccccCCCccCEEECCCC-ccCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEE
Confidence            99999988754 2222      23445888999999887 33321 12347889999988876322 2377888999999


Q ss_pred             EcCccceeEecccccCCCCcEEeccCCC
Q 043667          163 IGGCKKVVWRSATDHLGSQNSVVCRDTS  190 (387)
Q Consensus       163 i~~~~~~~~~~~~~~~~~L~~L~l~~~~  190 (387)
                      ++++....+ ..+..+++|+.|+++++.
T Consensus       182 Ls~N~i~~l-~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          182 LSKNHISDL-RALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             CCSSCCCBC-GGGTTCTTCSEEECCSEE
T ss_pred             CcCCCCCCC-hHHccCCCCCEEEccCCc
Confidence            988754443 456678888888888763

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.20  E-value=1.6e-12  Score=119.90  Aligned_cols=54  Identities=13%  Similarity=0.134  Sum_probs=28.6

Q ss_pred             EEcCcCCCCC-CCccCCccCCCccEEEeecCCCCCCCCC------cCCcC-CCcEEEecCCCCceE
Q 043667           12 CISGYRGAKF-PTWFGDSSFSNLVTLKFEYCGMCPTLPS------VGQLP-SLKHLAVCGMTSVKR   69 (387)
Q Consensus        12 ~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~l~~------~~~l~-~L~~L~l~~~~~l~~   69 (387)
                      +++.+..... |..+..  .++|++|++++| .++..+.      +..++ +|++|+++++ .+..
T Consensus         4 ~ls~n~~~~~~~~~~~~--~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~   65 (362)
T 3goz_A            4 KLTLHPGSNPVEEFTSI--PHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGN-SLGF   65 (362)
T ss_dssp             ECCCCTTCCHHHHHHTS--CTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGG
T ss_pred             ccccccchHHHHHHHhC--CCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCC-CCCH
Confidence            4444444432 333332  445777777775 4554442      44566 6777777766 4443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.19  E-value=4.1e-10  Score=98.10  Aligned_cols=172  Identities=19%  Similarity=0.159  Sum_probs=117.4

Q ss_pred             CccEEEeccCccccccccCCCCcceEEEcCccceeEe-cccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEc
Q 043667          136 ALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWR-SATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTK  214 (387)
Q Consensus       136 ~L~~L~l~~~~~l~~~~~~~~~L~~L~i~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~  214 (387)
                      ..+.++.++...-.......++++.|+++++....+. ..+..+++|++|+++++. +..++......+++|++  |.++
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~--L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGT--LGLA   91 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCE--EECT
T ss_pred             CCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCE--EECC
Confidence            4456666554322111122367889998887655533 346678899999998763 44444433566788888  8887


Q ss_pred             CCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCccc-ccCCCCCccEE
Q 043667          215 EQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQ-SSLSLSSLREI  293 (387)
Q Consensus       215 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L  293 (387)
                      ++. ++.++...++.+++|++|+++++ .+..+++.    .+..+    ++|++|+++++ .++.++. .+..+++|+.|
T Consensus        92 ~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~----~~~~l----~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L  160 (251)
T 3m19_A           92 NNQ-LASLPLGVFDHLTQLDKLYLGGN-QLKSLPSG----VFDRL----TKLKELRLNTN-QLQSIPAGAFDKLTNLQTL  160 (251)
T ss_dssp             TSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT----TTTTC----TTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             CCc-ccccChhHhcccCCCCEEEcCCC-cCCCcChh----HhccC----CcccEEECcCC-cCCccCHHHcCcCcCCCEE
Confidence            754 55666666778889999999885 56665543    24444    88999999885 5777776 47788899999


Q ss_pred             EecCCCCceecCCCCcC--CCceEEEeccCC
Q 043667          294 DIYDCSSLVSFPEVALP--SKLKKIEIRKCD  322 (387)
Q Consensus       294 ~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~  322 (387)
                      ++++ +.++.++...+.  ++|++|++++++
T Consensus       161 ~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          161 SLST-NQLQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             ECCS-SCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             ECCC-CcCCccCHHHHhCCCCCCEEEeeCCc
Confidence            9988 577777765443  789999998865

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.14  E-value=3e-10  Score=111.19  Aligned_cols=175  Identities=16%  Similarity=0.136  Sum_probs=117.8

Q ss_pred             ccCCCCcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCC
Q 043667          152 VSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDIC  231 (387)
Q Consensus       152 ~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~  231 (387)
                      ...+++|+.|++.++....++ .+..+++|+.|+++++. +..++.  ...+++|+.  |.++++. +..++  .+..++
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~--L~Ls~N~-l~~l~--~l~~l~  109 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP--LTNLKNLGW--LFLDENK-IKDLS--SLKDLK  109 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG--GGGCTTCCE--EECCSSC-CCCCT--TSTTCT
T ss_pred             hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh--hccCCCCCE--EECcCCC-CCCCh--hhccCC
Confidence            446678888888877644433 46778999999998764 333332  346777777  8887764 44444  256788


Q ss_pred             CccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcCC
Q 043667          232 SLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPS  311 (387)
Q Consensus       232 ~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~  311 (387)
                      +|++|+++++ .+..++      .+..+    ++|+.|++++| .++.+ ..+..+++|+.|++++| .+..++.....+
T Consensus       110 ~L~~L~Ls~N-~l~~l~------~l~~l----~~L~~L~Ls~N-~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~l~~l~  175 (605)
T 1m9s_A          110 KLKSLSLEHN-GISDIN------GLVHL----PQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDN-QISDIVPLAGLT  175 (605)
T ss_dssp             TCCEEECTTS-CCCCCG------GGGGC----TTCSEEECCSS-CCCCC-GGGGSCTTCSEEECCSS-CCCCCGGGTTCT
T ss_pred             CCCEEEecCC-CCCCCc------cccCC----CccCEEECCCC-ccCCc-hhhcccCCCCEEECcCC-cCCCchhhccCC
Confidence            8888888875 444443      24445    88888888875 46666 45778888888888874 566554433347


Q ss_pred             CceEEEeccCCCCCccccccccCCCCCcceEecccCccccccc
Q 043667          312 KLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIA  354 (387)
Q Consensus       312 ~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~  354 (387)
                      +|+.|++++| .+..++. +..+.+  |+.|++++| .+...+
T Consensus       176 ~L~~L~Ls~N-~i~~l~~-l~~l~~--L~~L~L~~N-~l~~~p  213 (605)
T 1m9s_A          176 KLQNLYLSKN-HISDLRA-LAGLKN--LDVLELFSQ-ECLNKP  213 (605)
T ss_dssp             TCCEEECCSS-CCCBCGG-GTTCTT--CSEEECCSE-EEECCC
T ss_pred             CCCEEECcCC-CCCCChH-HccCCC--CCEEEccCC-cCcCCc
Confidence            8888888875 4777653 555666  888888885 455444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.14  E-value=4.3e-10  Score=109.05  Aligned_cols=174  Identities=20%  Similarity=0.197  Sum_probs=100.6

Q ss_pred             CccEEEeccCccccccccCCCCcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcC
Q 043667          136 ALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKE  215 (387)
Q Consensus       136 ~L~~L~l~~~~~l~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~  215 (387)
                      +++.|+++++..-...-.-.++|++|+++++....++   ..+++|++|+++++ .+..++. ...   +|++  |.+++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~---~L~~--L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA---SLKH--LDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT---TCCE--EECCS
T ss_pred             CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc---CCCE--EECCC
Confidence            6778888776422111112367888888776544444   34677888877765 2333433 111   5555  66665


Q ss_pred             CCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEe
Q 043667          216 QTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDI  295 (387)
Q Consensus       216 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l  295 (387)
                      +. ++.+|.    .+++|+.|+++++ .+..++.            .+++|++|++++| .++.+|. +.  ++|+.|++
T Consensus       130 N~-l~~lp~----~l~~L~~L~Ls~N-~l~~lp~------------~l~~L~~L~Ls~N-~L~~lp~-l~--~~L~~L~L  187 (571)
T 3cvr_A          130 NQ-LTMLPE----LPALLEYINADNN-QLTMLPE------------LPTSLEVLSVRNN-QLTFLPE-LP--ESLEALDV  187 (571)
T ss_dssp             SC-CSCCCC----CCTTCCEEECCSS-CCSCCCC------------CCTTCCEEECCSS-CCSCCCC-CC--TTCCEEEC
T ss_pred             Cc-CCCCCC----cCccccEEeCCCC-ccCcCCC------------cCCCcCEEECCCC-CCCCcch-hh--CCCCEEEC
Confidence            43 334444    3567777777764 3444432            1267777777764 3566665 43  67777777


Q ss_pred             cCCCCceecCCCCcCCCc-------eEEEeccCCCCCccccccccCCCCCcceEecccC
Q 043667          296 YDCSSLVSFPEVALPSKL-------KKIEIRKCDALKSLPEAWMCDTNSSLETLKIERC  347 (387)
Q Consensus       296 ~~c~~l~~~~~~~~~~~L-------~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c  347 (387)
                      ++ +.++.+|.  +..+|       +.|++++| .++.+|..+..+++  |++|+++++
T Consensus       188 s~-N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~--L~~L~L~~N  240 (571)
T 3cvr_A          188 ST-NLLESLPA--VPVRNHHSEETEIFFRCREN-RITHIPENILSLDP--TCTIILEDN  240 (571)
T ss_dssp             CS-SCCSSCCC--CC--------CCEEEECCSS-CCCCCCGGGGGSCT--TEEEECCSS
T ss_pred             cC-CCCCchhh--HHHhhhcccccceEEecCCC-cceecCHHHhcCCC--CCEEEeeCC
Confidence            76 46666665  33456       77777663 46667766655555  777777774

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.11  E-value=8.2e-10  Score=94.74  Aligned_cols=125  Identities=22%  Similarity=0.198  Sum_probs=66.7

Q ss_pred             CCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccc-cCCCCCccEEEecCCCCceecCCCCc
Q 043667          231 CSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQS-SLSLSSLREIDIYDCSSLVSFPEVAL  309 (387)
Q Consensus       231 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~  309 (387)
                      ++|++|+++++ .+..+.+.    .+..+    ++|++|+++++ .++.++.. +..+++|+.|++++ +.++.++...+
T Consensus        40 ~~L~~L~Ls~n-~i~~~~~~----~~~~l----~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~  108 (229)
T 3e6j_A           40 TNAQILYLHDN-QITKLEPG----VFDSL----INLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGT-NQLTVLPSAVF  108 (229)
T ss_dssp             TTCSEEECCSS-CCCCCCTT----TTTTC----TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTT
T ss_pred             CCCCEEEcCCC-ccCccCHH----HhhCc----cCCcEEECCCC-CCCCcChhhcccCCCcCEEECCC-CcCCccChhHh
Confidence            55666666653 33333222    23333    56666666653 34555432 35566666666665 35555554333


Q ss_pred             C--CCceEEEeccCCCCCccccccccCCCCCcceEecccCcccccccCC--CCCCCccEEeecCC
Q 043667          310 P--SKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGV--QLPPSLKRLDIWNC  370 (387)
Q Consensus       310 ~--~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~C  370 (387)
                      .  ++|++|+++++ .++.+|..+..+.+  |++|+++++ +++.++..  ..+++|++|++++.
T Consensus       109 ~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~--L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A          109 DRLVHLKELFMCCN-KLTELPRGIERLTH--LTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             TTCTTCCEEECCSS-CCCSCCTTGGGCTT--CSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CcchhhCeEeccCC-cccccCcccccCCC--CCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCC
Confidence            2  56666666653 35566655555555  666666663 55555543  33456666666653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.10  E-value=3.6e-10  Score=99.12  Aligned_cols=55  Identities=25%  Similarity=0.175  Sum_probs=27.9

Q ss_pred             CCCccEEEeccCcccc-ccccCCCCcceEEEcCccceeEecccccCCCCcEEeccCC
Q 043667          134 LPALEMLVIEACKELS-VSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDT  189 (387)
Q Consensus       134 ~~~L~~L~l~~~~~l~-~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~  189 (387)
                      +++|+.|+++++..-. ..+..+++|+.|+++++..... ..+..+++|+.|+++++
T Consensus       127 l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          127 LKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             CTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEE
T ss_pred             cccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCC
Confidence            4455555555443111 2345556666666665543333 34455566666666654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.10  E-value=2.1e-09  Score=104.30  Aligned_cols=181  Identities=17%  Similarity=0.135  Sum_probs=108.1

Q ss_pred             CcceEeeccCcccccccCC-CCCCccEEEeccCccccccccCCCCcceEEEcCccceeEecccccCCCCcEEeccCCCCc
Q 043667          114 KLRELHILRCSKLQGTFPE-HLPALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQ  192 (387)
Q Consensus       114 ~L~~L~l~~~~~l~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  192 (387)
                      +++.|+++++ .+. .+|. .+++|+.|+++++..-... ..+++|+.|+++++....++. +.  .+|++|+++++. +
T Consensus        60 ~L~~L~Ls~n-~L~-~lp~~l~~~L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~ip~-l~--~~L~~L~Ls~N~-l  132 (571)
T 3cvr_A           60 QFSELQLNRL-NLS-SLPDNLPPQITVLEITQNALISLP-ELPASLEYLDACDNRLSTLPE-LP--ASLKHLDVDNNQ-L  132 (571)
T ss_dssp             TCSEEECCSS-CCS-CCCSCCCTTCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-C
T ss_pred             CccEEEeCCC-CCC-ccCHhHcCCCCEEECcCCCCcccc-cccCCCCEEEccCCCCCCcch-hh--cCCCEEECCCCc-C
Confidence            6777777766 454 3554 3567888887776533222 456778888887765444443 22  277888777653 3


Q ss_pred             ccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEec
Q 043667          193 VFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLR  272 (387)
Q Consensus       193 ~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~  272 (387)
                      ..++.    .+++|+.  |.++++. ++.+|.    .+++|++|+++++ .+..++.      +      .++|+.|+++
T Consensus       133 ~~lp~----~l~~L~~--L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N-~L~~lp~------l------~~~L~~L~Ls  188 (571)
T 3cvr_A          133 TMLPE----LPALLEY--INADNNQ-LTMLPE----LPTSLEVLSVRNN-QLTFLPE------L------PESLEALDVS  188 (571)
T ss_dssp             SCCCC----CCTTCCE--EECCSSC-CSCCCC----CCTTCCEEECCSS-CCSCCCC------C------CTTCCEEECC
T ss_pred             CCCCC----cCccccE--EeCCCCc-cCcCCC----cCCCcCEEECCCC-CCCCcch------h------hCCCCEEECc
Confidence            33332    4566666  7776654 444554    3567888888774 4444443      1      1677888887


Q ss_pred             cCCCCCCcccccCCCCCc-------cEEEecCCCCceecCCCCc-CCCceEEEeccCCCCCccccc
Q 043667          273 YCKGLVKLPQSSLSLSSL-------REIDIYDCSSLVSFPEVAL-PSKLKKIEIRKCDALKSLPEA  330 (387)
Q Consensus       273 ~c~~l~~~~~~~~~~~~L-------~~L~l~~c~~l~~~~~~~~-~~~L~~L~l~~c~~l~~l~~~  330 (387)
                      ++ .++.+|. +..  +|       +.|++++ +.++.+|.... .++|+.|++++++--..+|..
T Consensus       189 ~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~  249 (571)
T 3cvr_A          189 TN-LLESLPA-VPV--RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNPLSSRIRES  249 (571)
T ss_dssp             SS-CCSSCCC-CC----------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred             CC-CCCchhh-HHH--hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence            74 4667776 433  56       7788877 46777765332 277888888776533444444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.07  E-value=1.8e-09  Score=94.68  Aligned_cols=146  Identities=20%  Similarity=0.227  Sum_probs=77.8

Q ss_pred             cccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHH
Q 043667          175 TDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKD  254 (387)
Q Consensus       175 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~  254 (387)
                      +..+++|++|+++++ .+..++.  ...+++|++  |.++++. ++.++.  ++.+++|++|+++++ .+..++..    
T Consensus        37 ~~~l~~L~~L~l~~n-~i~~l~~--l~~l~~L~~--L~L~~N~-i~~~~~--l~~l~~L~~L~L~~N-~l~~l~~~----  103 (263)
T 1xeu_A           37 QKELSGVQNFNGDNS-NIQSLAG--MQFFTNLKE--LHLSHNQ-ISDLSP--LKDLTKLEELSVNRN-RLKNLNGI----  103 (263)
T ss_dssp             HHHHTTCSEEECTTS-CCCCCTT--GGGCTTCCE--EECCSSC-CCCCGG--GTTCSSCCEEECCSS-CCSCCTTC----
T ss_pred             hhhcCcCcEEECcCC-CcccchH--HhhCCCCCE--EECCCCc-cCCChh--hccCCCCCEEECCCC-ccCCcCcc----
Confidence            345677888877765 2333331  344555555  6665543 333333  455666666666663 33433321    


Q ss_pred             HHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCCCccccccccC
Q 043667          255 QQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCD  334 (387)
Q Consensus       255 ~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~  334 (387)
                             ..++|++|++++| .++.++ .+..+++|+.|++++ +.++.++.....++|++|+++++. ++++ ..+..+
T Consensus       104 -------~~~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls~-N~i~~~~~l~~l~~L~~L~L~~N~-i~~~-~~l~~l  171 (263)
T 1xeu_A          104 -------PSACLSRLFLDNN-ELRDTD-SLIHLKNLEILSIRN-NKLKSIVMLGFLSKLEVLDLHGNE-ITNT-GGLTRL  171 (263)
T ss_dssp             -------CCSSCCEEECCSS-CCSBSG-GGTTCTTCCEEECTT-SCCCBCGGGGGCTTCCEEECTTSC-CCBC-TTSTTC
T ss_pred             -------ccCcccEEEccCC-ccCCCh-hhcCcccccEEECCC-CcCCCChHHccCCCCCEEECCCCc-Ccch-HHhccC
Confidence                   0156666666664 355544 355666666666665 355555432233666666666543 5544 333344


Q ss_pred             CCCCcceEecccC
Q 043667          335 TNSSLETLKIERC  347 (387)
Q Consensus       335 ~~~~L~~L~l~~c  347 (387)
                      .+  |+.|+++++
T Consensus       172 ~~--L~~L~l~~N  182 (263)
T 1xeu_A          172 KK--VNWIDLTGQ  182 (263)
T ss_dssp             CC--CCEEEEEEE
T ss_pred             CC--CCEEeCCCC
Confidence            44  666666663

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.06  E-value=1.1e-09  Score=92.51  Aligned_cols=58  Identities=16%  Similarity=0.147  Sum_probs=24.3

Q ss_pred             CCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecC
Q 043667          179 GSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDW  240 (387)
Q Consensus       179 ~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  240 (387)
                      +++++|+++++. +..++......+++|++  +.+.++ .++.++...++.+++|++|++++
T Consensus        28 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~--L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           28 AQTTYLDLETNS-LKSLPNGVFDELTSLTQ--LYLGGN-KLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TTCSEEECCSSC-CCCCCTTTTTTCTTCSE--EECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCcEEEcCCCc-cCcCChhhhcccccCcE--EECCCC-ccCccChhhcCCCCCcCEEECCC
Confidence            456666665542 22222222233444444  444433 23333333334444445554444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.05  E-value=5.5e-11  Score=109.54  Aligned_cols=78  Identities=8%  Similarity=-0.040  Sum_probs=39.4

Q ss_pred             CCCcceEeeccCcccccccC-------CCCC-CccEEEeccCcccc---cccc----CC-CCcceEEEcCccceeE----
Q 043667          112 FPKLRELHILRCSKLQGTFP-------EHLP-ALEMLVIEACKELS---VSVS----SL-PALCKLKIGGCKKVVW----  171 (387)
Q Consensus       112 ~~~L~~L~l~~~~~l~~~~~-------~~~~-~L~~L~l~~~~~l~---~~~~----~~-~~L~~L~i~~~~~~~~----  171 (387)
                      .++|++|+++++. +.+..+       ..++ +|++|+++++..-.   ..+.    .. ++|++|+++++.....    
T Consensus        21 ~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~   99 (362)
T 3goz_A           21 PHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE   99 (362)
T ss_dssp             CTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred             CCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence            4458888887763 432221       1245 67777777664221   1122    22 6677777766643221    


Q ss_pred             -ecccccC-CCCcEEeccCCC
Q 043667          172 -RSATDHL-GSQNSVVCRDTS  190 (387)
Q Consensus       172 -~~~~~~~-~~L~~L~l~~~~  190 (387)
                       ...+..+ ++|++|+++++.
T Consensus       100 l~~~l~~~~~~L~~L~Ls~N~  120 (362)
T 3goz_A          100 LVKTLAAIPFTITVLDLGWND  120 (362)
T ss_dssp             HHHHHHTSCTTCCEEECCSSC
T ss_pred             HHHHHHhCCCCccEEECcCCc
Confidence             1112233 566666666553

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.03  E-value=9.6e-10  Score=89.42  Aligned_cols=133  Identities=19%  Similarity=0.328  Sum_probs=98.4

Q ss_pred             cCCCccEEEecCCCCcc--cchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCcee-cC
Q 043667          229 DICSLKKLTIDWCPKLQ--SLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVS-FP  305 (387)
Q Consensus       229 ~~~~L~~L~l~~~~~l~--~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~-~~  305 (387)
                      ..++|++|++++|. +.  .++.     .+..+    ++|+.|++++|. ++.+ ..+..+++|+.|+++++ .++. ++
T Consensus        22 ~~~~L~~L~l~~n~-l~~~~i~~-----~~~~l----~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~   88 (168)
T 2ell_A           22 TPAAVRELVLDNCK-SNDGKIEG-----LTAEF----VNLEFLSLINVG-LISV-SNLPKLPKLKKLELSEN-RIFGGLD   88 (168)
T ss_dssp             CTTSCSEEECCSCB-CBTTBCSS-----CCGGG----GGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESC-CCCSCCC
T ss_pred             CcccCCEEECCCCC-CChhhHHH-----HHHhC----CCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCC-cCchHHH
Confidence            35789999999864 44  4543     24444    899999999865 7766 66788999999999985 5655 43


Q ss_pred             CCCc-CCCceEEEeccCCCCCccc--cccccCCCCCcceEecccCcccccccC----C-CCCCCccEEeecCCccccccc
Q 043667          306 EVAL-PSKLKKIEIRKCDALKSLP--EAWMCDTNSSLETLKIERCRSLTYIAG----V-QLPPSLKRLDIWNCDNIRTLT  377 (387)
Q Consensus       306 ~~~~-~~~L~~L~l~~c~~l~~l~--~~~~~~~~~~L~~L~l~~c~~l~~~~~----~-~~~~~L~~L~l~~C~~l~~l~  377 (387)
                      .... .++|++|++++| .++.++  ..+..++.  |++|+++++ .++.++.    . ..+++|++|++++|+ ++++|
T Consensus        89 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~--L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~  163 (168)
T 2ell_A           89 MLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLEC--LKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAP  163 (168)
T ss_dssp             HHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSC--CCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCC
T ss_pred             HHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCC--CCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC-hhhcc
Confidence            2221 389999999986 578776  56666667  999999996 6777775    2 567899999999975 67777


Q ss_pred             cc
Q 043667          378 VE  379 (387)
Q Consensus       378 ~~  379 (387)
                      .+
T Consensus       164 ~~  165 (168)
T 2ell_A          164 DS  165 (168)
T ss_dssp             SS
T ss_pred             cc
Confidence            54

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.03  E-value=2.1e-09  Score=91.54  Aligned_cols=126  Identities=16%  Similarity=0.208  Sum_probs=72.9

Q ss_pred             cccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccc-
Q 043667          205 KLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQS-  283 (387)
Q Consensus       205 ~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~-  283 (387)
                      .+++  |.+.++ .+..++...+..+++|++|+++++ .+..+.++    .+..+    ++|++|+++++ .++.++.. 
T Consensus        33 ~l~~--L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~----~~~~l----~~L~~L~Ls~N-~l~~l~~~~   99 (220)
T 2v9t_B           33 TITE--IRLEQN-TIKVIPPGAFSPYKKLRRIDLSNN-QISELAPD----AFQGL----RSLNSLVLYGN-KITELPKSL   99 (220)
T ss_dssp             TCCE--EECCSS-CCCEECTTSSTTCTTCCEEECCSS-CCCEECTT----TTTTC----SSCCEEECCSS-CCCCCCTTT
T ss_pred             CCCE--EECCCC-cCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHH----HhhCC----cCCCEEECCCC-cCCccCHhH
Confidence            4455  666654 344555544566677777777764 44444332    34444    67777777663 45666654 


Q ss_pred             cCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCcccc-ccccCCCCCcceEecccC
Q 043667          284 SLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPE-AWMCDTNSSLETLKIERC  347 (387)
Q Consensus       284 ~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~-~~~~~~~~~L~~L~l~~c  347 (387)
                      +..+++|+.|++++ +.++.++...+.  ++|++|+++++ .++.++. .+..+.+  |++|+++++
T Consensus       100 f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~--L~~L~L~~N  162 (220)
T 2v9t_B          100 FEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRA--IQTMHLAQN  162 (220)
T ss_dssp             TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTT--CCEEECCSS
T ss_pred             ccCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCC--CCEEEeCCC
Confidence            45667777777776 456665544433  66777777664 3555553 2444455  777777663

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.03  E-value=1.3e-09  Score=88.69  Aligned_cols=105  Identities=18%  Similarity=0.284  Sum_probs=73.3

Q ss_pred             CCCCCcEEEEcCcCCC--CCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceE-eCccccCCCcc
Q 043667            4 PHKNLEQFCISGYRGA--KFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKR-LGSEFYGKGAA   80 (387)
Q Consensus         4 ~~~~L~~L~l~~~~~~--~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~-~~~~~~~~~~~   80 (387)
                      .+++|++|+++++...  .+|..+..  +++|++|++++| .++.++.++.+++|++|+++++ .+.. ++..      .
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~--l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~------~   91 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAE--FVNLEFLSLINV-GLISVSNLPKLPKLKKLELSEN-RIFGGLDML------A   91 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGG--GGGCCEEEEESS-CCCCCSSCCCCSSCCEEEEESC-CCCSCCCHH------H
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHh--CCCCCEEeCcCC-CCCChhhhccCCCCCEEECcCC-cCchHHHHH------H
Confidence            4578999999988877  78887766  889999999986 5777777888999999999988 4544 3322      2


Q ss_pred             cCCCCcceeeccccCCccccc-cCcCCCCccCCCCcceEeeccC
Q 043667           81 IPFPRLETLRFDAMLGWEDWI-PLRSGQGVEGFPKLRELHILRC  123 (387)
Q Consensus        81 ~~~~~L~~L~l~~~~~l~~~~-~~~~~~~i~~~~~L~~L~l~~~  123 (387)
                      ..+++|++|+++++ .+..+. .    ..+..+++|+.|+++++
T Consensus        92 ~~l~~L~~L~Ls~N-~l~~~~~~----~~l~~l~~L~~L~l~~N  130 (168)
T 2ell_A           92 EKLPNLTHLNLSGN-KLKDISTL----EPLKKLECLKSLDLFNC  130 (168)
T ss_dssp             HHCTTCCEEECBSS-SCCSSGGG----GGGSSCSCCCEEECCSS
T ss_pred             hhCCCCCEEeccCC-ccCcchhH----HHHhcCCCCCEEEeeCC
Confidence            34778888888765 333321 1    22334667777777665

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.00  E-value=4e-09  Score=90.43  Aligned_cols=129  Identities=19%  Similarity=0.188  Sum_probs=74.9

Q ss_pred             CCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhh
Q 043667          179 GSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQ  258 (387)
Q Consensus       179 ~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~  258 (387)
                      ++|++|+++++. +..+.......+++|++  |.+.++. +..++...++.+++|+.|+++++ .+..+++.    .+..
T Consensus        40 ~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~--L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~----~~~~  110 (229)
T 3e6j_A           40 TNAQILYLHDNQ-ITKLEPGVFDSLINLKE--LYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN-QLTVLPSA----VFDR  110 (229)
T ss_dssp             TTCSEEECCSSC-CCCCCTTTTTTCTTCCE--EECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT----TTTT
T ss_pred             CCCCEEEcCCCc-cCccCHHHhhCccCCcE--EECCCCC-CCCcChhhcccCCCcCEEECCCC-cCCccChh----HhCc
Confidence            455555555432 22222121334455555  5555443 44555554566777777777774 55555443    2444


Q ss_pred             hhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCC
Q 043667          259 LCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCD  322 (387)
Q Consensus       259 l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~  322 (387)
                      +    ++|++|+++++ .++.+|..+..+++|+.|++++ +.++.++...+.  ++|+.|++.+++
T Consensus       111 l----~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          111 L----VHLKELFMCCN-KLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             C----TTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             c----hhhCeEeccCC-cccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCC
Confidence            4    77777777764 4667777677777777777776 466666654333  677777777654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.99  E-value=3.2e-09  Score=96.35  Aligned_cols=257  Identities=11%  Similarity=0.047  Sum_probs=147.2

Q ss_pred             CCCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC--cCC--------cCCCcEEEecCCCCceEeCccc
Q 043667            5 HKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQ--------LPSLKHLAVCGMTSVKRLGSEF   74 (387)
Q Consensus         5 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~--------l~~L~~L~l~~~~~l~~~~~~~   74 (387)
                      +++|+.|+++++.+..+...-+  .++.++.+.+...    .+|.  +..        +++|+.|.+.+  .++.++...
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~--~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~a  119 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAG--TYPNGKFYIYMAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAA  119 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSS--SSGGGCCEEECTT----EECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTT
T ss_pred             hccCeEEecCcceeEEecCccc--ccccccccccccc----ccCHHHhcccccccccccCCCcEEECCc--cccchhHHH
Confidence            5789999999888762211111  1344444444332    3443  455        78888888876  566676554


Q ss_pred             cCCCcccCCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccc--cccC----CCCCCcc-EEEeccCcc
Q 043667           75 YGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQ--GTFP----EHLPALE-MLVIEACKE  147 (387)
Q Consensus        75 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~--~~~~----~~~~~L~-~L~l~~~~~  147 (387)
                      |     ..+++|+++++.+.. +.....    ..+..+.++..+.........  ..+.    ..+..|+ .+.+.....
T Consensus       120 F-----~~~~~L~~l~l~~n~-i~~i~~----~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~  189 (329)
T 3sb4_A          120 F-----KGCDNLKICQIRKKT-APNLLP----EALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGK  189 (329)
T ss_dssp             T-----TTCTTCCEEEBCCSS-CCEECT----TSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCC
T ss_pred             h-----hcCcccceEEcCCCC-ccccch----hhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCc
Confidence            3     457788888887532 222221    222234444444433211000  0011    1134444 344444333


Q ss_pred             cccc----ccCCCCcceEEEcCcccee-EecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccc
Q 043667          148 LSVS----VSSLPALCKLKIGGCKKVV-WRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKS  222 (387)
Q Consensus       148 l~~~----~~~~~~L~~L~i~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~  222 (387)
                      +...    .....+++.+.+.+.-... .......+++|+.+++.++. +..++...+..+++|++  +.+.+.  +..+
T Consensus       190 l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~--l~l~~n--i~~I  264 (329)
T 3sb4_A          190 LEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLK--IKLPHN--LKTI  264 (329)
T ss_dssp             HHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCE--EECCTT--CCEE
T ss_pred             HHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCE--EECCcc--ccee
Confidence            3211    1123455666655431111 11111236888888888543 56666666778888888  888764  7778


Q ss_pred             cccccccCCCcc-EEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCccc-ccCCCCCccEEEe
Q 043667          223 HDGLLQDICSLK-KLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQ-SSLSLSSLREIDI  295 (387)
Q Consensus       223 ~~~~l~~~~~L~-~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l  295 (387)
                      +...|..+.+|+ .+.+.+  .+..+++.    +|...    ++|+++++.+ ..++.++. .+..+++|+.+..
T Consensus       265 ~~~aF~~~~~L~~~l~l~~--~l~~I~~~----aF~~c----~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          265 GQRVFSNCGRLAGTLELPA--SVTAIEFG----AFMGC----DNLRYVLATG-DKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CTTTTTTCTTCCEEEEECT--TCCEECTT----TTTTC----TTEEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred             hHHHhhCChhccEEEEEcc--cceEEchh----hhhCC----ccCCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence            888888899999 999986  67777665    45544    8999999866 45777765 5778888888763

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.98  E-value=1.2e-09  Score=99.10  Aligned_cols=229  Identities=13%  Similarity=0.094  Sum_probs=119.3

Q ss_pred             CCCcceEeeccCcccc--cccCCCCCCccEEEeccCccc--cccccCCCCcceEEEcCccceeEe-ccccc--------C
Q 043667          112 FPKLRELHILRCSKLQ--GTFPEHLPALEMLVIEACKEL--SVSVSSLPALCKLKIGGCKKVVWR-SATDH--------L  178 (387)
Q Consensus       112 ~~~L~~L~l~~~~~l~--~~~~~~~~~L~~L~l~~~~~l--~~~~~~~~~L~~L~i~~~~~~~~~-~~~~~--------~  178 (387)
                      ++++++|.+++.....  ..+...+++|+.|+++++...  ....+..+.++.+.....   .++ ..+..        +
T Consensus        24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~  100 (329)
T 3sb4_A           24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGK  100 (329)
T ss_dssp             HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEEC
T ss_pred             hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhccccccccccc
Confidence            5567888887532211  012223677888888776533  111122222233333222   111 22334        7


Q ss_pred             CCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecC-----------------C
Q 043667          179 GSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDW-----------------C  241 (387)
Q Consensus       179 ~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~-----------------~  241 (387)
                      ++|+++.+.+  .+..++...+..+++|++  +.+.+.. +..++...+..+.++..+....                 |
T Consensus       101 ~~L~~l~L~~--~i~~I~~~aF~~~~~L~~--l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~  175 (329)
T 3sb4_A          101 QTLEKVILSE--KIKNIEDAAFKGCDNLKI--CQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG  175 (329)
T ss_dssp             TTCCC-CBCT--TCCEECTTTTTTCTTCCE--EEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred             CCCcEEECCc--cccchhHHHhhcCcccce--EEcCCCC-ccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence            8888888876  667777666778888888  8877543 4455666566666666665443                 1


Q ss_pred             CCcc---------cchhhHH-------------------HHHHhhhhhccCCccEEEeccCCCCCCccc-ccCCCCCccE
Q 043667          242 PKLQ---------SLVAEEE-------------------KDQQQQLCELSCRLEYLRLRYCKGLVKLPQ-SSLSLSSLRE  292 (387)
Q Consensus       242 ~~l~---------~~~~~~~-------------------~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~  292 (387)
                      ..++         .++...+                   ...+..+...+++|+++++.++ .++.++. .+..+++|+.
T Consensus       176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~  254 (329)
T 3sb4_A          176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLK  254 (329)
T ss_dssp             CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCE
T ss_pred             cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCE
Confidence            1111         0000000                   0001111112466666666653 3555554 3556666666


Q ss_pred             EEecCCCCceecCCCCcC--CCce-EEEeccCCCCCccc-cccccCCCCCcceEecccCcccccccCC
Q 043667          293 IDIYDCSSLVSFPEVALP--SKLK-KIEIRKCDALKSLP-EAWMCDTNSSLETLKIERCRSLTYIAGV  356 (387)
Q Consensus       293 L~l~~c~~l~~~~~~~~~--~~L~-~L~l~~c~~l~~l~-~~~~~~~~~~L~~L~l~~c~~l~~~~~~  356 (387)
                      +++.+  +++.++...|.  ++|+ .+++.+  +++.++ ..+..+.+  |+.+++.+ ++++.++..
T Consensus       255 l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~--L~~l~l~~-n~i~~I~~~  315 (329)
T 3sb4_A          255 IKLPH--NLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDN--LRYVLATG-DKITTLGDE  315 (329)
T ss_dssp             EECCT--TCCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTT--EEEEEECS-SCCCEECTT
T ss_pred             EECCc--ccceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCcc--CCEEEeCC-CccCccchh
Confidence            66664  36666665555  5566 666654  455554 34444555  66666655 356666543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.95  E-value=1.3e-08  Score=85.85  Aligned_cols=155  Identities=23%  Similarity=0.342  Sum_probs=109.7

Q ss_pred             ccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccc
Q 043667          204 PKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQS  283 (387)
Q Consensus       204 ~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~  283 (387)
                      ++|++  +.++++. ++.++...++.+++|++|+++++ .+..++..    .+..+    ++|++|+++++ .++.++..
T Consensus        28 ~~l~~--L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~----~~~~l----~~L~~L~Ls~n-~l~~~~~~   94 (208)
T 2o6s_A           28 AQTTY--LDLETNS-LKSLPNGVFDELTSLTQLYLGGN-KLQSLPNG----VFNKL----TSLTYLNLSTN-QLQSLPNG   94 (208)
T ss_dssp             TTCSE--EECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTT----TTTTC----TTCCEEECCSS-CCCCCCTT
T ss_pred             CCCcE--EEcCCCc-cCcCChhhhcccccCcEEECCCC-ccCccChh----hcCCC----CCcCEEECCCC-cCCccCHh
Confidence            45666  8888764 55666666778899999999884 55665543    24444    89999999885 46676654


Q ss_pred             -cCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCccccc-cccCCCCCcceEecccCcccccccCCCCC
Q 043667          284 -SLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPEA-WMCDTNSSLETLKIERCRSLTYIAGVQLP  359 (387)
Q Consensus       284 -~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~  359 (387)
                       +..+++|+.|++++ +.++.++...+.  ++|++|+++++ .++.++.. +..+.+  |++|++++++ +.     ...
T Consensus        95 ~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~--L~~L~l~~N~-~~-----~~~  164 (208)
T 2o6s_A           95 VFDKLTQLKELALNT-NQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTS--LQYIWLHDNP-WD-----CTC  164 (208)
T ss_dssp             TTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTT--CCEEECCSCC-BC-----CCT
T ss_pred             HhcCccCCCEEEcCC-CcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCC--ccEEEecCCC-ee-----cCC
Confidence             57889999999988 577777765443  88999999885 47777653 455666  9999999863 21     345


Q ss_pred             CCccEEeecCCccccccccccc
Q 043667          360 PSLKRLDIWNCDNIRTLTVEEG  381 (387)
Q Consensus       360 ~~L~~L~l~~C~~l~~l~~~~~  381 (387)
                      ++|++|+++.+..-..+|..+|
T Consensus       165 ~~l~~L~~~~n~~~g~ip~~~~  186 (208)
T 2o6s_A          165 PGIRYLSEWINKHSGVVRNSAG  186 (208)
T ss_dssp             TTTHHHHHHHHHCTTTBBCTTS
T ss_pred             CCHHHHHHHHHhCCceeeccCc
Confidence            6788888887555557776554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.95  E-value=6.6e-09  Score=88.44  Aligned_cols=122  Identities=13%  Similarity=0.181  Sum_probs=76.5

Q ss_pred             EEEcCCCCcccc-cccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCccc-ccCCCC
Q 043667          211 LSTKEQTYIWKS-HDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQ-SSLSLS  288 (387)
Q Consensus       211 L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~  288 (387)
                      +.++++. ++.+ +...++.+++|++|+++++ .+..+++.    .+..+    ++|++|+++++ .++.++. .+..++
T Consensus        37 L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~----~~~~l----~~L~~L~Ls~N-~l~~~~~~~~~~l~  105 (220)
T 2v70_A           37 LRLNNNE-FTVLEATGIFKKLPQLRKINFSNN-KITDIEEG----AFEGA----SGVNEILLTSN-RLENVQHKMFKGLE  105 (220)
T ss_dssp             EECCSSC-CCEECCCCCGGGCTTCCEEECCSS-CCCEECTT----TTTTC----TTCCEEECCSS-CCCCCCGGGGTTCS
T ss_pred             EEcCCCc-CCccCchhhhccCCCCCEEECCCC-cCCEECHH----HhCCC----CCCCEEECCCC-ccCccCHhHhcCCc
Confidence            6776654 4433 3344567777888888774 45555443    34444    77788887774 3555554 366777


Q ss_pred             CccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCcc-ccccccCCCCCcceEecccC
Q 043667          289 SLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSL-PEAWMCDTNSSLETLKIERC  347 (387)
Q Consensus       289 ~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l-~~~~~~~~~~~L~~L~l~~c  347 (387)
                      +|+.|++++ +.++.++...+.  ++|++|+++++ .++.+ |..+..+.+  |++|+++++
T Consensus       106 ~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~--L~~L~L~~N  163 (220)
T 2v70_A          106 SLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHS--LSTLNLLAN  163 (220)
T ss_dssp             SCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTT--CCEEECCSC
T ss_pred             CCCEEECCC-CcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCC--CCEEEecCc
Confidence            788888877 466666544443  67777877774 36655 455555566  777777774

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.93  E-value=3.9e-09  Score=97.05  Aligned_cols=127  Identities=16%  Similarity=0.160  Sum_probs=53.0

Q ss_pred             CCCcEEeccCCCCcccccCCCCC-CCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHh
Q 043667          179 GSQNSVVCRDTSNQVFLAGPLKP-QLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQ  257 (387)
Q Consensus       179 ~~L~~L~l~~~~~l~~~~~~~~~-~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~  257 (387)
                      +.++.|+++++. +..++..... .+++|++  |.++++ .+..++...+..+++|++|+++++ .+..+++.    .+.
T Consensus        39 ~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~--L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~----~~~  109 (361)
T 2xot_A           39 SYTALLDLSHNN-LSRLRAEWTPTRLTNLHS--LLLSHN-HLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEF----LFS  109 (361)
T ss_dssp             TTCSEEECCSSC-CCEECTTSSSSCCTTCCE--EECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTT----TTT
T ss_pred             CCCCEEECCCCC-CCccChhhhhhcccccCE--EECCCC-cCCccChhhccCCCCCCEEECCCC-cCCcCCHH----HhC
Confidence            345566665542 2333222222 4444444  444433 233333333444455555555542 23333322    133


Q ss_pred             hhhhccCCccEEEeccCCCCCCc-ccccCCCCCccEEEecCCCCceecCCCCc-----CCCceEEEecc
Q 043667          258 QLCELSCRLEYLRLRYCKGLVKL-PQSSLSLSSLREIDIYDCSSLVSFPEVAL-----PSKLKKIEIRK  320 (387)
Q Consensus       258 ~l~~~~~~L~~L~l~~c~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~-----~~~L~~L~l~~  320 (387)
                      .+    ++|+.|+++++. ++.+ +..+..+++|+.|++++ +.++.++...+     .++|+.|++++
T Consensus       110 ~l----~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~  172 (361)
T 2xot_A          110 DL----QALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSS  172 (361)
T ss_dssp             TC----TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCS
T ss_pred             CC----cCCCEEECCCCc-ccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCC
Confidence            33    455555554432 3333 22344445555555544 34444443322     24455555544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.93  E-value=1.6e-09  Score=86.18  Aligned_cols=105  Identities=18%  Similarity=0.281  Sum_probs=75.1

Q ss_pred             CCCCCcEEEEcCcCCC--CCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceE-eCccccCCCcc
Q 043667            4 PHKNLEQFCISGYRGA--KFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKR-LGSEFYGKGAA   80 (387)
Q Consensus         4 ~~~~L~~L~l~~~~~~--~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~-~~~~~~~~~~~   80 (387)
                      .+++|++|+++++...  .+|..+..  +++|++|++++| .++.++.++.+++|++|+++++ .+.. ++..      .
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~--l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~------~   84 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDE--FEELEFLSTINV-GLTSIANLPKLNKLKKLELSDN-RVSGGLEVL------A   84 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTT--CTTCCEEECTTS-CCCCCTTCCCCTTCCEEECCSS-CCCSCTHHH------H
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhh--cCCCcEEECcCC-CCCCchhhhcCCCCCEEECCCC-cccchHHHH------h
Confidence            4578999999988877  78887776  899999999986 6777777888999999999988 4544 3322      2


Q ss_pred             cCCCCcceeeccccCCcccc-ccCcCCCCccCCCCcceEeeccC
Q 043667           81 IPFPRLETLRFDAMLGWEDW-IPLRSGQGVEGFPKLRELHILRC  123 (387)
Q Consensus        81 ~~~~~L~~L~l~~~~~l~~~-~~~~~~~~i~~~~~L~~L~l~~~  123 (387)
                      ..+++|++|+++++. +.+. ..    ..+..+++|+.|+++++
T Consensus        85 ~~l~~L~~L~ls~N~-i~~~~~~----~~~~~l~~L~~L~l~~N  123 (149)
T 2je0_A           85 EKCPNLTHLNLSGNK-IKDLSTI----EPLKKLENLKSLDLFNC  123 (149)
T ss_dssp             HHCTTCCEEECTTSC-CCSHHHH----GGGGGCTTCCEEECTTC
T ss_pred             hhCCCCCEEECCCCc-CCChHHH----HHHhhCCCCCEEeCcCC
Confidence            347888888888654 3332 11    22335677777777776

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.88  E-value=3.3e-08  Score=84.10  Aligned_cols=147  Identities=16%  Similarity=0.215  Sum_probs=91.7

Q ss_pred             ceEEEcCccceeEecccccCCCCcEEeccCCCCcccc-cCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEE
Q 043667          159 CKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFL-AGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLT  237 (387)
Q Consensus       159 ~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~  237 (387)
                      +.++++++....++..+  .+.+++|+++++. +..+ +......+++|++  |.++++. ++.++...++.+++|++|+
T Consensus        14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~--L~L~~N~-i~~i~~~~~~~l~~L~~L~   87 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNE-FTVLEATGIFKKLPQLRK--INFSNNK-ITDIEEGAFEGASGVNEIL   87 (220)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSC-CCEECCCCCGGGCTTCCE--EECCSSC-CCEECTTTTTTCTTCCEEE
T ss_pred             CEeEeCCCCcccCccCC--CCCCCEEEcCCCc-CCccCchhhhccCCCCCE--EECCCCc-CCEECHHHhCCCCCCCEEE
Confidence            45666554433333322  3467788887653 3333 2222456677777  7777654 5555555567788888888


Q ss_pred             ecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCc-ccccCCCCCccEEEecCCCCceecCCCCcC--CCce
Q 043667          238 IDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKL-PQSSLSLSSLREIDIYDCSSLVSFPEVALP--SKLK  314 (387)
Q Consensus       238 l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~  314 (387)
                      ++++ .+..+++.    .+..+    ++|++|+++++. ++.+ +..+..+++|+.|++++ +.++.++...+.  ++|+
T Consensus        88 Ls~N-~l~~~~~~----~~~~l----~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~  156 (220)
T 2v70_A           88 LTSN-RLENVQHK----MFKGL----ESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLS  156 (220)
T ss_dssp             CCSS-CCCCCCGG----GGTTC----SSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCC
T ss_pred             CCCC-ccCccCHh----HhcCC----cCCCEEECCCCc-CCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCC
Confidence            8874 45555443    35555    788888888754 5555 45567788888888887 567776544443  7788


Q ss_pred             EEEeccCC
Q 043667          315 KIEIRKCD  322 (387)
Q Consensus       315 ~L~l~~c~  322 (387)
                      +|++++++
T Consensus       157 ~L~L~~N~  164 (220)
T 2v70_A          157 TLNLLANP  164 (220)
T ss_dssp             EEECCSCC
T ss_pred             EEEecCcC
Confidence            88887754

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.88  E-value=5.4e-09  Score=85.68  Aligned_cols=109  Identities=17%  Similarity=0.169  Sum_probs=75.0

Q ss_pred             CCCCCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccC
Q 043667            3 EPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIP   82 (387)
Q Consensus         3 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~   82 (387)
                      ..+.+|++|+++++....+|.....  .++|++|++++| .++.++.++.+++|++|+++++ .+..++...     ...
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~~~~~~--~~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N-~l~~~~~~~-----~~~   86 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIENLGAT--LDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNN-RICRIGEGL-----DQA   86 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGG--TTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSS-CCCEECSCH-----HHH
T ss_pred             CCcCCceEEEeeCCCCchhHHhhhc--CCCCCEEECCCC-CCCcccccccCCCCCEEECCCC-cccccCcch-----hhc
Confidence            4567889999998888877653332  448999999886 6777777888899999999988 677776543     245


Q ss_pred             CCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCc
Q 043667           83 FPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCS  124 (387)
Q Consensus        83 ~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~  124 (387)
                      +++|++|+++++. +..+..   ...+..+++|+.|+++++.
T Consensus        87 l~~L~~L~L~~N~-i~~~~~---~~~l~~l~~L~~L~l~~N~  124 (176)
T 1a9n_A           87 LPDLTELILTNNS-LVELGD---LDPLASLKSLTYLCILRNP  124 (176)
T ss_dssp             CTTCCEEECCSCC-CCCGGG---GGGGGGCTTCCEEECCSSG
T ss_pred             CCCCCEEECCCCc-CCcchh---hHhhhcCCCCCEEEecCCC
Confidence            7888888888643 232210   0123356777777777663

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.88  E-value=2.3e-11  Score=118.34  Aligned_cols=202  Identities=13%  Similarity=0.061  Sum_probs=109.9

Q ss_pred             cCCCCcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCC
Q 043667          153 SSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICS  232 (387)
Q Consensus       153 ~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~  232 (387)
                      ..+++|+.|+++++....++..+..+++|++|+++++..+..++.              .+..+..... +...++.+++
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~--------------ll~~~~~~~~-~~~~l~~l~~  410 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL--------------LMRALDPLLY-EKETLQYFST  410 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH--------------HHHHHCTGGG-HHHHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHH--------------HHHhcccccC-CHHHHHHHHh
Confidence            456777777777665445666666677777777654321111100              0000011111 1222455666


Q ss_pred             ccEEEecCCCCcccchhhHH-HHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCC-cC
Q 043667          233 LKKLTIDWCPKLQSLVAEEE-KDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVA-LP  310 (387)
Q Consensus       233 L~~L~l~~~~~l~~~~~~~~-~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~  310 (387)
                      |+.|+...+..+..+....+ ...+..+  ....|+.|+++++ .++.+|. +..+++|+.|++++ +.++.+|... ..
T Consensus       411 L~~L~~l~~n~~~~L~~l~l~~n~i~~l--~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~-N~l~~lp~~~~~l  485 (567)
T 1dce_A          411 LKAVDPMRAAYLDDLRSKFLLENSVLKM--EYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSH-NRLRALPPALAAL  485 (567)
T ss_dssp             HHHHCGGGHHHHHHHHHHHHHHHHHHHH--HHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCS-SCCCCCCGGGGGC
T ss_pred             cccCcchhhcccchhhhhhhhccccccc--CccCceEEEecCC-CCCCCcC-ccccccCcEeecCc-ccccccchhhhcC
Confidence            66666222222222221100 0012221  1146777787774 5666765 77777788888877 4666665421 12


Q ss_pred             CCceEEEeccCCCCCccccccccCCCCCcceEecccCcccccc--cCC-CCCCCccEEeecCCcccccccccc
Q 043667          311 SKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYI--AGV-QLPPSLKRLDIWNCDNIRTLTVEE  380 (387)
Q Consensus       311 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~--~~~-~~~~~L~~L~l~~C~~l~~l~~~~  380 (387)
                      ++|+.|+++++ .++.+| .+..+++  |++|+++++ +++.+  |.. +.+++|++|++++ ++++.+|...
T Consensus       486 ~~L~~L~Ls~N-~l~~lp-~l~~l~~--L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~-N~l~~~~~~~  552 (567)
T 1dce_A          486 RCLEVLQASDN-ALENVD-GVANLPR--LQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQG-NSLCQEEGIQ  552 (567)
T ss_dssp             TTCCEEECCSS-CCCCCG-GGTTCSS--CCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTT-SGGGGSSSCT
T ss_pred             CCCCEEECCCC-CCCCCc-ccCCCCC--CcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecC-CcCCCCccHH
Confidence            77888888774 466676 5555666  888888774 66666  433 5567788888877 4466666443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.86  E-value=2.7e-08  Score=84.60  Aligned_cols=108  Identities=18%  Similarity=0.226  Sum_probs=62.0

Q ss_pred             CCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCc
Q 043667          201 PQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKL  280 (387)
Q Consensus       201 ~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~  280 (387)
                      ..+++|++  |.++++. +..+....+..+++|++|+++++ .+..+++.    .+..+    ++|++|+++++ .++.+
T Consensus        53 ~~l~~L~~--L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~----~f~~l----~~L~~L~L~~N-~l~~~  119 (220)
T 2v9t_B           53 SPYKKLRR--IDLSNNQ-ISELAPDAFQGLRSLNSLVLYGN-KITELPKS----LFEGL----FSLQLLLLNAN-KINCL  119 (220)
T ss_dssp             TTCTTCCE--EECCSSC-CCEECTTTTTTCSSCCEEECCSS-CCCCCCTT----TTTTC----TTCCEEECCSS-CCCCC
T ss_pred             hCCCCCCE--EECCCCc-CCCcCHHHhhCCcCCCEEECCCC-cCCccCHh----HccCC----CCCCEEECCCC-CCCEe
Confidence            34444444  5554432 33333333556677777777763 45555543    23444    77777777764 35554


Q ss_pred             c-cccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCC
Q 043667          281 P-QSSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCD  322 (387)
Q Consensus       281 ~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~  322 (387)
                      + ..+..+++|+.|++++ +.++.++...+.  ++|++|++++++
T Consensus       120 ~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          120 RVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCC
Confidence            3 3466777777777776 466666654333  677777777643

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.86  E-value=1.4e-08  Score=93.26  Aligned_cols=167  Identities=17%  Similarity=0.190  Sum_probs=109.9

Q ss_pred             EEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccc-cCCCccEEEecCCCCcccchhhHHHHHHhhhhh
Q 043667          183 SVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQ-DICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCE  261 (387)
Q Consensus       183 ~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~  261 (387)
                      .++.++. .+..+|...+.   .++.  |.++++ .++.++...+. .+++|+.|+++++ .+..+++.    .+..+  
T Consensus        22 ~l~c~~~-~l~~iP~~~~~---~l~~--L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~----~~~~l--   87 (361)
T 2xot_A           22 ILSCSKQ-QLPNVPQSLPS---YTAL--LDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSE----AFVPV--   87 (361)
T ss_dssp             EEECCSS-CCSSCCSSCCT---TCSE--EECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTT----TTTTC--
T ss_pred             EEEeCCC-CcCccCccCCC---CCCE--EECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChh----hccCC--
Confidence            4444432 34445443222   3555  778765 46666665565 7888999999874 56666543    35555  


Q ss_pred             ccCCccEEEeccCCCCCCccc-ccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCcccccc----ccC
Q 043667          262 LSCRLEYLRLRYCKGLVKLPQ-SSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPEAW----MCD  334 (387)
Q Consensus       262 ~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~~~----~~~  334 (387)
                        ++|++|+++++ .++.++. .+..+++|+.|++++ +.++.++...+.  ++|++|+++++ .++.++...    ..+
T Consensus        88 --~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l  162 (361)
T 2xot_A           88 --PNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYN-NHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKL  162 (361)
T ss_dssp             --TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----C
T ss_pred             --CCCCEEECCCC-cCCcCCHHHhCCCcCCCEEECCC-CcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccC
Confidence              88999999885 4776665 467888899999988 567777655444  78999999874 577777653    235


Q ss_pred             CCCCcceEecccCcccccccCC--CCCCC--ccEEeecCCc
Q 043667          335 TNSSLETLKIERCRSLTYIAGV--QLPPS--LKRLDIWNCD  371 (387)
Q Consensus       335 ~~~~L~~L~l~~c~~l~~~~~~--~~~~~--L~~L~l~~C~  371 (387)
                      .+  |++|++++ ++++.++..  ..++.  ++.|++.+.|
T Consensus       163 ~~--L~~L~L~~-N~l~~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          163 PK--LMLLDLSS-NKLKKLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             TT--CCEEECCS-SCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             Cc--CCEEECCC-CCCCccCHHHhhhccHhhcceEEecCCC
Confidence            55  88999988 477777643  23343  4778888743

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.85  E-value=7.3e-07  Score=82.85  Aligned_cols=223  Identities=9%  Similarity=0.065  Sum_probs=147.9

Q ss_pred             CccEEEeccCc-ccc-ccccCCCCcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEE
Q 043667          136 ALEMLVIEACK-ELS-VSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILST  213 (387)
Q Consensus       136 ~L~~L~l~~~~-~l~-~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l  213 (387)
                      +|+.+.+...- .+. ..+..+++|+.+++.++....+....-..++|+.+.+.+  ++..+....+..+++|+.  +.+
T Consensus       158 ~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~--l~l  233 (401)
T 4fdw_A          158 TVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKT--IEI  233 (401)
T ss_dssp             CCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCC--EEC
T ss_pred             CceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCE--Eec
Confidence            57777776421 222 457788888888887655444444333357888888863  466666666777888888  887


Q ss_pred             cCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCC----CCCccc-ccCCCC
Q 043667          214 KEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKG----LVKLPQ-SSLSLS  288 (387)
Q Consensus       214 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~----l~~~~~-~~~~~~  288 (387)
                      ..  .++.++...+.. .+|+.+.+.+  .+..++..    +|...    ++|+++.+.+...    .+.++. .+..|+
T Consensus       234 ~~--~l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~----aF~~c----~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~  300 (401)
T 4fdw_A          234 PE--NVSTIGQEAFRE-SGITTVKLPN--GVTNIASR----AFYYC----PELAEVTTYGSTFNDDPEAMIHPYCLEGCP  300 (401)
T ss_dssp             CT--TCCEECTTTTTT-CCCSEEEEET--TCCEECTT----TTTTC----TTCCEEEEESSCCCCCTTCEECTTTTTTCT
T ss_pred             CC--CccCcccccccc-CCccEEEeCC--CccEEChh----HhhCC----CCCCEEEeCCccccCCcccEECHHHhhCCc
Confidence            65  466666666665 7899999854  56666654    34443    8899999876321    112443 467889


Q ss_pred             CccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCcccc-ccccCCCCCcceEecccCcccccccCC---CCCCCc
Q 043667          289 SLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPE-AWMCDTNSSLETLKIERCRSLTYIAGV---QLPPSL  362 (387)
Q Consensus       289 ~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~---~~~~~L  362 (387)
                      +|+.+++.  ++++.++...|.  ++|+.+.+..  +++.+.. .+..+ +  |+.+.+.+. .+..++..   +...++
T Consensus       301 ~L~~l~l~--~~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~--L~~l~l~~n-~~~~l~~~~F~~~~~~l  372 (401)
T 4fdw_A          301 KLARFEIP--ESIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-G--IKEVKVEGT-TPPQVFEKVWYGFPDDI  372 (401)
T ss_dssp             TCCEECCC--TTCCEECTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-C--CCEEEECCS-SCCBCCCSSCCCSCTTC
T ss_pred             cCCeEEeC--CceEEEhhhhhcCCCCccEEEECc--cccEEcHHhCCCC-C--CCEEEEcCC-CCcccccccccCCCCCc
Confidence            99999997  468888887776  7899999854  4777764 44445 6  999999884 55555544   333567


Q ss_pred             cEEeecCCcccccccccccccc
Q 043667          363 KRLDIWNCDNIRTLTVEEGVQS  384 (387)
Q Consensus       363 ~~L~l~~C~~l~~l~~~~~~~~  384 (387)
                      ..|.+-. ..+.......+|..
T Consensus       373 ~~l~vp~-~~~~~y~~a~~W~~  393 (401)
T 4fdw_A          373 TVIRVPA-ESVEKYKNANGWRD  393 (401)
T ss_dssp             CEEEECG-GGHHHHHHSTTGGG
T ss_pred             cEEEeCH-HHHHHhhhccchhh
Confidence            7787776 44555554445544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.80  E-value=1.3e-08  Score=83.38  Aligned_cols=128  Identities=14%  Similarity=0.108  Sum_probs=93.9

Q ss_pred             ccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCC
Q 043667          228 QDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEV  307 (387)
Q Consensus       228 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~  307 (387)
                      ..+++|++|+++++ .+..++.      +..+   .++|+.|+++++ .++.+ ..+..+++|+.|++++ +.++.++..
T Consensus        16 ~~~~~L~~L~l~~n-~l~~i~~------~~~~---~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~-N~l~~~~~~   82 (176)
T 1a9n_A           16 TNAVRDRELDLRGY-KIPVIEN------LGAT---LDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNN-NRICRIGEG   82 (176)
T ss_dssp             ECTTSCEEEECTTS-CCCSCCC------GGGG---TTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCS-SCCCEECSC
T ss_pred             CCcCCceEEEeeCC-CCchhHH------hhhc---CCCCCEEECCCC-CCCcc-cccccCCCCCEEECCC-CcccccCcc
Confidence            45778999999986 5555532      2222   259999999885 47766 5678899999999998 578888754


Q ss_pred             Cc--CCCceEEEeccCCCCCcccc--ccccCCCCCcceEecccCcccccccCC-----CCCCCccEEeecCCcc
Q 043667          308 AL--PSKLKKIEIRKCDALKSLPE--AWMCDTNSSLETLKIERCRSLTYIAGV-----QLPPSLKRLDIWNCDN  372 (387)
Q Consensus       308 ~~--~~~L~~L~l~~c~~l~~l~~--~~~~~~~~~L~~L~l~~c~~l~~~~~~-----~~~~~L~~L~l~~C~~  372 (387)
                      .+  .++|++|+++++ .+++++.  .+..+++  |++|+++++ .++.++..     ..+++|++|++++++.
T Consensus        83 ~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~--L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           83 LDQALPDLTELILTNN-SLVELGDLDPLASLKS--LTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             HHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTT--CCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             hhhcCCCCCEEECCCC-cCCcchhhHhhhcCCC--CCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            32  389999999985 4788876  5666667  999999996 66666642     3568899999988653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.79  E-value=4.6e-08  Score=81.38  Aligned_cols=118  Identities=14%  Similarity=0.164  Sum_probs=86.1

Q ss_pred             EEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCccc-ccCCCCC
Q 043667          211 LSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQ-SSLSLSS  289 (387)
Q Consensus       211 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~  289 (387)
                      +...+ ..++.+|..+   .++|++|+++++ .+..++.     .+..+    ++|++|+++++ .++.++. .+..+++
T Consensus        15 l~~~~-~~l~~ip~~~---~~~l~~L~L~~n-~i~~ip~-----~~~~l----~~L~~L~Ls~N-~i~~i~~~~f~~l~~   79 (193)
T 2wfh_A           15 VRCSN-KGLKVLPKGI---PRDVTELYLDGN-QFTLVPK-----ELSNY----KHLTLIDLSNN-RISTLSNQSFSNMTQ   79 (193)
T ss_dssp             EECTT-SCCSSCCSCC---CTTCCEEECCSS-CCCSCCG-----GGGGC----TTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred             EEcCC-CCCCcCCCCC---CCCCCEEECCCC-cCchhHH-----Hhhcc----cCCCEEECCCC-cCCEeCHhHccCCCC
Confidence            45443 3466777653   468999999984 5666653     46666    89999999885 4676664 4778899


Q ss_pred             ccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCccccc-cccCCCCCcceEecccC
Q 043667          290 LREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPEA-WMCDTNSSLETLKIERC  347 (387)
Q Consensus       290 L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~~-~~~~~~~~L~~L~l~~c  347 (387)
                      |+.|++++ +.++.++...+.  ++|++|+++++ .++.++.. +..+.+  |++|++++.
T Consensus        80 L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~--L~~L~L~~N  136 (193)
T 2wfh_A           80 LLTLILSY-NRLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSA--LSHLAIGAN  136 (193)
T ss_dssp             CCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTT--CCEEECCSS
T ss_pred             CCEEECCC-CccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCcc--ccEEEeCCC
Confidence            99999998 578888765554  88999999884 57777753 555666  999999884

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.78  E-value=1.8e-06  Score=80.08  Aligned_cols=40  Identities=15%  Similarity=0.200  Sum_probs=22.4

Q ss_pred             CCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCcc
Q 043667           30 FSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSE   73 (387)
Q Consensus        30 l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~   73 (387)
                      +++|+.+.+..  .++.++.  +..+.+|+.+++..  .++.++..
T Consensus        70 c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~  111 (394)
T 4fs7_A           70 CRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPD--SVKMIGRC  111 (394)
T ss_dssp             CTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTT
T ss_pred             CCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCC--CceEccch
Confidence            45666666643  3555543  55666777776643  24555443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.78  E-value=1.3e-06  Score=80.99  Aligned_cols=318  Identities=12%  Similarity=0.090  Sum_probs=177.3

Q ss_pred             CCCCCCCCcEEEEcCcCCCCCCCc-cCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCC
Q 043667            1 MLEPHKNLEQFCISGYRGAKFPTW-FGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGK   77 (387)
Q Consensus         1 ~~~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~   77 (387)
                      +|..+.+|+.+.+.. ....+.+. +..  +++|+.+++.+  .++.++.  +..+.+|+.+.+..  .++.++...|..
T Consensus        66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~--c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p~--~l~~i~~~aF~~  138 (394)
T 4fs7_A           66 AFQGCRKVTEIKIPS-TVREIGEFAFEN--CSKLEIINIPD--SVKMIGRCTFSGCYALKSILLPL--MLKSIGVEAFKG  138 (394)
T ss_dssp             TTTTCTTEEEEECCT-TCCEECTTTTTT--CTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEECTTTTTT
T ss_pred             HhhCCCCceEEEeCC-CccCcchhHhhC--CCCCcEEEeCC--CceEccchhhcccccchhhcccC--ceeeecceeeec
Confidence            467788899888863 24444333 333  78999999965  3565554  66777887766643  355555443321


Q ss_pred             CcccCCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcc-cccccCCCCCCccEEEeccCc-ccc-ccccC
Q 043667           78 GAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSK-LQGTFPEHLPALEMLVIEACK-ELS-VSVSS  154 (387)
Q Consensus        78 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~-l~~~~~~~~~~L~~L~l~~~~-~l~-~~~~~  154 (387)
                           ...++.....   .......    .....+.+|+.+.+..... +.......+++|+.+.+...- .+. ..+..
T Consensus       139 -----~~~~~~~~~~---~~~~i~~----~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~  206 (394)
T 4fs7_A          139 -----CDFKEITIPE---GVTVIGD----EAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAE  206 (394)
T ss_dssp             -----CCCSEEECCT---TCCEECT----TTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTT
T ss_pred             -----ccccccccCc---cccccch----hhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCCceEeCchhhcc
Confidence                 1211111111   1111111    2233467777777754311 111122235667777664421 111 34566


Q ss_pred             CCCcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCcc
Q 043667          155 LPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLK  234 (387)
Q Consensus       155 ~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~  234 (387)
                      ++.|+.+.+..... .+........+|+.+.+.+  ....+.......+..++.  +.+...  ...+....+..+..++
T Consensus       207 ~~~L~~i~~~~~~~-~i~~~~~~~~~l~~i~ip~--~~~~i~~~~f~~~~~l~~--~~~~~~--~~~i~~~~F~~~~~l~  279 (394)
T 4fs7_A          207 CILLENMEFPNSLY-YLGDFALSKTGVKNIIIPD--SFTELGKSVFYGCTDLES--ISIQNN--KLRIGGSLFYNCSGLK  279 (394)
T ss_dssp             CTTCCBCCCCTTCC-EECTTTTTTCCCCEEEECT--TCCEECSSTTTTCSSCCE--EEECCT--TCEECSCTTTTCTTCC
T ss_pred             ccccceeecCCCce-EeehhhcccCCCceEEECC--Cceeccccccccccccee--EEcCCC--cceeeccccccccccc
Confidence            67777666543221 1222233346777776653  233333333556666666  666542  3344555566778888


Q ss_pred             EEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCccc-ccCCCCCccEEEecCCCCceecCCCCcC--C
Q 043667          235 KLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQ-SSLSLSSLREIDIYDCSSLVSFPEVALP--S  311 (387)
Q Consensus       235 ~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~  311 (387)
                      .+.....    .++..    .+..    +.+|+++.+.+  .++.+.. .+..+.+|+.+++.  .+++.++..+|.  .
T Consensus       280 ~~~~~~~----~i~~~----~F~~----~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp--~~v~~I~~~aF~~c~  343 (394)
T 4fs7_A          280 KVIYGSV----IVPEK----TFYG----CSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLP--YLVEEIGKRSFRGCT  343 (394)
T ss_dssp             EEEECSS----EECTT----TTTT----CTTCCEEEECT--TCCEECTTTTTTCTTCCEECCC--TTCCEECTTTTTTCT
T ss_pred             eeccCce----eeccc----cccc----ccccccccccc--ccceechhhhcCCCCCCEEEeC--CcccEEhHHhccCCC
Confidence            8777642    12222    2322    27888888854  3666654 36688899999886  358888877776  6


Q ss_pred             CceEEEeccCCCCCcccc-ccccCCCCCcceEecccCcccccccCCCCCCCccEEeecCCcccccc
Q 043667          312 KLKKIEIRKCDALKSLPE-AWMCDTNSSLETLKIERCRSLTYIAGVQLPPSLKRLDIWNCDNIRTL  376 (387)
Q Consensus       312 ~L~~L~l~~c~~l~~l~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~C~~l~~l  376 (387)
                      +|+.+++..  +++.+.. .+..+.+  |+.+.+..  .++.+..          ...+|.+|+.|
T Consensus       344 ~L~~i~lp~--~l~~I~~~aF~~C~~--L~~i~lp~--~~~~~~~----------~F~~c~~L~~I  393 (394)
T 4fs7_A          344 SLSNINFPL--SLRKIGANAFQGCIN--LKKVELPK--RLEQYRY----------DFEDTTKFKWI  393 (394)
T ss_dssp             TCCEECCCT--TCCEECTTTBTTCTT--CCEEEEEG--GGGGGGG----------GBCTTCEEEEE
T ss_pred             CCCEEEECc--cccEehHHHhhCCCC--CCEEEECC--CCEEhhh----------eecCCCCCcEE
Confidence            888888854  3777754 4555667  88888754  3433321          23567776655

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.77  E-value=2e-08  Score=79.80  Aligned_cols=123  Identities=22%  Similarity=0.325  Sum_probs=61.2

Q ss_pred             CCCccEEEecCCCCc-ccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCcee-cCCC
Q 043667          230 ICSLKKLTIDWCPKL-QSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVS-FPEV  307 (387)
Q Consensus       230 ~~~L~~L~l~~~~~l-~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~-~~~~  307 (387)
                      .++|++|+++++.-- +.++.     .+..+    ++|++|++++| .++.+ ..+..+++|+.|+++++ .++. ++..
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~-----~~~~l----~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~   83 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEG-----LTDEF----EELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDN-RVSGGLEVL   83 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCS-----CCTTC----TTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSS-CCCSCTHHH
T ss_pred             CccCeEEEccCCcCChhHHHH-----HHhhc----CCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCC-cccchHHHH
Confidence            355666666664322 13332     12333    66666666654 34444 44556666666666653 3443 3221


Q ss_pred             Cc-CCCceEEEeccCCCCCccc--cccccCCCCCcceEecccCcccccccC---C--CCCCCccEEeec
Q 043667          308 AL-PSKLKKIEIRKCDALKSLP--EAWMCDTNSSLETLKIERCRSLTYIAG---V--QLPPSLKRLDIW  368 (387)
Q Consensus       308 ~~-~~~L~~L~l~~c~~l~~l~--~~~~~~~~~~L~~L~l~~c~~l~~~~~---~--~~~~~L~~L~l~  368 (387)
                      .. .++|++|++++|. ++.++  ..+..+++  |++|++++| .++.++.   .  ..+++|++|+++
T Consensus        84 ~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~--L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           84 AEKCPNLTHLNLSGNK-IKDLSTIEPLKKLEN--LKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             HHHCTTCCEEECTTSC-CCSHHHHGGGGGCTT--CCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             hhhCCCCCEEECCCCc-CCChHHHHHHhhCCC--CCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence            11 2566666666543 55443  44444455  666666664 4555443   1  334555555554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.76  E-value=5.7e-08  Score=80.78  Aligned_cols=121  Identities=18%  Similarity=0.177  Sum_probs=89.5

Q ss_pred             CcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC-cCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCc
Q 043667            8 LEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRL   86 (387)
Q Consensus         8 L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L   86 (387)
                      -+.++.+++....+|..+    .++|++|+++++ .++.+|. ++.+++|++|+++++ .+..++...     +..+++|
T Consensus        12 ~~~l~~~~~~l~~ip~~~----~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~-----f~~l~~L   80 (193)
T 2wfh_A           12 DTVVRCSNKGLKVLPKGI----PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNN-RISTLSNQS-----FSNMTQL   80 (193)
T ss_dssp             TTEEECTTSCCSSCCSCC----CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTT-----TTTCTTC
T ss_pred             CCEEEcCCCCCCcCCCCC----CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCC-cCCEeCHhH-----ccCCCCC
Confidence            367888888888888754    468999999985 7777874 788999999999998 666666543     3468999


Q ss_pred             ceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCC----CCCCccEEEeccCc
Q 043667           87 ETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPE----HLPALEMLVIEACK  146 (387)
Q Consensus        87 ~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~----~~~~L~~L~l~~~~  146 (387)
                      ++|++++. .+.....    ..+..+++|+.|+++++ .+. .+|.    .+++|+.|++.+.+
T Consensus        81 ~~L~Ls~N-~l~~i~~----~~f~~l~~L~~L~L~~N-~l~-~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           81 LTLILSYN-RLRCIPP----RTFDGLKSLRLLSLHGN-DIS-VVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             CEEECCSS-CCCBCCT----TTTTTCTTCCEEECCSS-CCC-BCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEECCCC-ccCEeCH----HHhCCCCCCCEEECCCC-CCC-eeChhhhhcCccccEEEeCCCC
Confidence            99999874 3444443    45556899999999887 444 3433    36789999988743

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.73  E-value=1.3e-07  Score=78.52  Aligned_cols=100  Identities=13%  Similarity=0.113  Sum_probs=72.3

Q ss_pred             CcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC---cCCcCCCcEEEecCCCCceEeCccccCCCcccCCC
Q 043667            8 LEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS---VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFP   84 (387)
Q Consensus         8 L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~---~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~   84 (387)
                      -++++++++....+|..+.    .+|++|+++++ .++.++.   ++.+++|++|+++++ .++.+....     +..++
T Consensus        10 ~~~l~~s~~~l~~ip~~~~----~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-----~~~l~   78 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPRDIP----LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNA-----FEGAS   78 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC----TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTT-----TTTCT
T ss_pred             CCEEEcCCCCcCcCccCCC----CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhH-----cCCcc
Confidence            3788999999988887653    48999999986 6777764   788999999999998 666654332     34578


Q ss_pred             CcceeeccccCCccccccCcCCCCccCCCCcceEeeccC
Q 043667           85 RLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRC  123 (387)
Q Consensus        85 ~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~  123 (387)
                      +|++|++++. .+.....    ..+..+++|+.|+++++
T Consensus        79 ~L~~L~Ls~N-~l~~~~~----~~~~~l~~L~~L~L~~N  112 (192)
T 1w8a_A           79 HIQELQLGEN-KIKEISN----KMFLGLHQLKTLNLYDN  112 (192)
T ss_dssp             TCCEEECCSC-CCCEECS----SSSTTCTTCCEEECCSS
T ss_pred             cCCEEECCCC-cCCccCH----HHhcCCCCCCEEECCCC
Confidence            8888888863 3444433    33445777777777766

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.70  E-value=1.8e-06  Score=80.26  Aligned_cols=230  Identities=9%  Similarity=0.078  Sum_probs=130.3

Q ss_pred             CccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCc
Q 043667           32 NLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGV  109 (387)
Q Consensus        32 ~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i  109 (387)
                      +|+.+.+.+  .++.++.  +... +|+.+.+.+  .++.++...|     ..+++|+.+++.+. ++.....    ..+
T Consensus       136 ~L~~i~l~~--~i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF-----~~c~~L~~l~l~~n-~l~~I~~----~aF  200 (401)
T 4fdw_A          136 QIAKVVLNE--GLKSIGDMAFFNS-TVQEIVFPS--TLEQLKEDIF-----YYCYNLKKADLSKT-KITKLPA----STF  200 (401)
T ss_dssp             CCSEEECCT--TCCEECTTTTTTC-CCCEEECCT--TCCEECSSTT-----TTCTTCCEEECTTS-CCSEECT----TTT
T ss_pred             CccEEEeCC--CccEECHHhcCCC-CceEEEeCC--CccEehHHHh-----hCcccCCeeecCCC-cceEech----hhE
Confidence            577777654  2555553  3342 577777664  4556654432     34677777777641 2222221    222


Q ss_pred             cCCCCcceEeeccCcccccccC----CCCCCccEEEeccC-cccc-ccccCCCCcceEEEcCccceeEecccccCCCCcE
Q 043667          110 EGFPKLRELHILRCSKLQGTFP----EHLPALEMLVIEAC-KELS-VSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNS  183 (387)
Q Consensus       110 ~~~~~L~~L~l~~~~~l~~~~~----~~~~~L~~L~l~~~-~~l~-~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~  183 (387)
                      . +.+|+.+.+...  +. .++    ..+++|+.+++... ..+. ..+.. .+|+.+.+...-..--...+..+++|+.
T Consensus       201 ~-~~~L~~l~lp~~--l~-~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~  275 (401)
T 4fdw_A          201 V-YAGIEEVLLPVT--LK-EIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAE  275 (401)
T ss_dssp             T-TCCCSEEECCTT--CC-EECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCE
T ss_pred             e-ecccCEEEeCCc--hh-eehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeCCCccEEChhHhhCCCCCCE
Confidence            2 456777766532  22 122    23566777776542 1121 23334 5777777743211111344556777888


Q ss_pred             EeccCCCC----cccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhh
Q 043667          184 VVCRDTSN----QVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQL  259 (387)
Q Consensus       184 L~l~~~~~----l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l  259 (387)
                      +.+.+...    ...++...+..+++|+.  +.+..  .++.++...|..+.+|+.+.+..  ++..+....    |.  
T Consensus       276 l~l~~~~~~~~~~~~I~~~aF~~c~~L~~--l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~a----F~--  343 (401)
T 4fdw_A          276 VTTYGSTFNDDPEAMIHPYCLEGCPKLAR--FEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVTQINFSA----FN--  343 (401)
T ss_dssp             EEEESSCCCCCTTCEECTTTTTTCTTCCE--ECCCT--TCCEECTTTTTTCCSCCEEEECT--TCCEECTTS----SS--
T ss_pred             EEeCCccccCCcccEECHHHhhCCccCCe--EEeCC--ceEEEhhhhhcCCCCccEEEECc--cccEEcHHh----CC--
Confidence            87765321    12344444677778887  77763  47777777788889999999964  466665542    32  


Q ss_pred             hhccCCccEEEeccCCCCCCccc-ccCCCC-CccEEEecC
Q 043667          260 CELSCRLEYLRLRYCKGLVKLPQ-SSLSLS-SLREIDIYD  297 (387)
Q Consensus       260 ~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~-~L~~L~l~~  297 (387)
                        .+ +|+++.+.++. ...++. .+..++ +++.|.+..
T Consensus       344 --~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          344 --NT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITVIRVPA  379 (401)
T ss_dssp             --SS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCEEEECG
T ss_pred             --CC-CCCEEEEcCCC-CcccccccccCCCCCccEEEeCH
Confidence              23 89999998753 444443 345553 678888865

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.68  E-value=1.4e-07  Score=78.41  Aligned_cols=120  Identities=13%  Similarity=0.192  Sum_probs=86.7

Q ss_pred             EEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCc-ccccCCCCC
Q 043667          211 LSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKL-PQSSLSLSS  289 (387)
Q Consensus       211 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~-~~~~~~~~~  289 (387)
                      +.+++. .++.+|..+   .+++++|+++++ .+..+++..   .+..+    ++|++|+++++ .++.+ +..+..+++
T Consensus        13 l~~s~~-~l~~ip~~~---~~~l~~L~l~~n-~i~~~~~~~---~~~~l----~~L~~L~Ls~N-~l~~~~~~~~~~l~~   79 (192)
T 1w8a_A           13 VDCTGR-GLKEIPRDI---PLHTTELLLNDN-ELGRISSDG---LFGRL----PHLVKLELKRN-QLTGIEPNAFEGASH   79 (192)
T ss_dssp             EECTTS-CCSSCCSCC---CTTCSEEECCSC-CCCSBCCSC---SGGGC----TTCCEEECCSS-CCCCBCTTTTTTCTT
T ss_pred             EEcCCC-CcCcCccCC---CCCCCEEECCCC-cCCccCCcc---ccccC----CCCCEEECCCC-CCCCcCHhHcCCccc
Confidence            666553 456777653   348999999985 556555421   24555    89999999885 46665 566888999


Q ss_pred             ccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCcc-ccccccCCCCCcceEecccC
Q 043667          290 LREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSL-PEAWMCDTNSSLETLKIERC  347 (387)
Q Consensus       290 L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l-~~~~~~~~~~~L~~L~l~~c  347 (387)
                      |+.|++++ +.++.++...+.  ++|++|+++++. ++.+ +..+..+.+  |++|+++++
T Consensus        80 L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~--L~~L~L~~N  136 (192)
T 1w8a_A           80 IQELQLGE-NKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNS--LTSLNLASN  136 (192)
T ss_dssp             CCEEECCS-CCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTT--CCEEECTTC
T ss_pred             CCEEECCC-CcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCC--CCEEEeCCC
Confidence            99999998 678888765553  899999999854 6655 556666667  999999885

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.67  E-value=7e-08  Score=93.86  Aligned_cols=101  Identities=14%  Similarity=0.161  Sum_probs=76.4

Q ss_pred             CCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC-cCCcCCCcEEEecCCCCceEeCccccCCCcccCCC
Q 043667            6 KNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFP   84 (387)
Q Consensus         6 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~   84 (387)
                      ..|++|+++++.+..+|. ++.  +++|+.|++++| .++.+|. ++.+++|+.|+++++ .++.++ .      +..++
T Consensus       441 ~~L~~L~Ls~n~l~~lp~-~~~--l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~------l~~l~  508 (567)
T 1dce_A          441 ADVRVLHLAHKDLTVLCH-LEQ--LLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVD-G------VANLP  508 (567)
T ss_dssp             TTCSEEECTTSCCSSCCC-GGG--GTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCG-G------GTTCS
T ss_pred             cCceEEEecCCCCCCCcC-ccc--cccCcEeecCcc-cccccchhhhcCCCCCEEECCCC-CCCCCc-c------cCCCC
Confidence            468899999998888887 665  889999999886 6778875 888999999999988 666665 3      35678


Q ss_pred             CcceeeccccCCccccc-cCcCCCCccCCCCcceEeeccC
Q 043667           85 RLETLRFDAMLGWEDWI-PLRSGQGVEGFPKLRELHILRC  123 (387)
Q Consensus        85 ~L~~L~l~~~~~l~~~~-~~~~~~~i~~~~~L~~L~l~~~  123 (387)
                      +|++|+++++ .+.... +    ..+..+++|+.|+++++
T Consensus       509 ~L~~L~Ls~N-~l~~~~~p----~~l~~l~~L~~L~L~~N  543 (567)
T 1dce_A          509 RLQELLLCNN-RLQQSAAI----QPLVSCPRLVLLNLQGN  543 (567)
T ss_dssp             SCCEEECCSS-CCCSSSTT----GGGGGCTTCCEEECTTS
T ss_pred             CCcEEECCCC-CCCCCCCc----HHHhcCCCCCEEEecCC
Confidence            8888888874 344432 3    44556788888888876

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.64  E-value=3.6e-07  Score=74.70  Aligned_cols=119  Identities=23%  Similarity=0.282  Sum_probs=69.0

Q ss_pred             EEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccc-cCCCCC
Q 043667          211 LSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQS-SLSLSS  289 (387)
Q Consensus       211 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~  289 (387)
                      +...+. .++.+|..   ..++|++|+++++ .+..++..    .+..+    ++|++|+++++ .++.++.. +..+++
T Consensus        12 l~~~~~-~l~~~p~~---~~~~l~~L~l~~n-~l~~~~~~----~~~~l----~~L~~L~l~~n-~l~~~~~~~~~~l~~   77 (177)
T 2o6r_A           12 IRCNSK-GLTSVPTG---IPSSATRLELESN-KLQSLPHG----VFDKL----TQLTKLSLSQN-QIQSLPDGVFDKLTK   77 (177)
T ss_dssp             EECCSS-CCSSCCTT---CCTTCSEEECCSS-CCCCCCTT----TTTTC----TTCSEEECCSS-CCCCCCTTTTTTCTT
T ss_pred             EEecCC-CCccCCCC---CCCCCcEEEeCCC-cccEeCHH----HhcCc----ccccEEECCCC-cceEeChhHccCCCc
Confidence            444332 34455543   2357777777764 34444432    23444    67777777764 45665543 466777


Q ss_pred             ccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCccccc-cccCCCCCcceEecccC
Q 043667          290 LREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPEA-WMCDTNSSLETLKIERC  347 (387)
Q Consensus       290 L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~~-~~~~~~~~L~~L~l~~c  347 (387)
                      |+.|++++ +.++.++...+.  ++|++|+++++ .++.++.. +..+++  |++|+++++
T Consensus        78 L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~--L~~L~l~~N  134 (177)
T 2o6r_A           78 LTILYLHE-NKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTS--LQKIWLHTN  134 (177)
T ss_dssp             CCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTT--CCEEECCSS
T ss_pred             cCEEECCC-CCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcc--cCEEEecCC
Confidence            77777776 456666654332  67777777764 46666543 233455  777777764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.63  E-value=2.7e-07  Score=75.44  Aligned_cols=122  Identities=16%  Similarity=0.208  Sum_probs=89.2

Q ss_pred             CCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccCCC
Q 043667            7 NLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFP   84 (387)
Q Consensus         7 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~   84 (387)
                      ..+.++.+++....+|..+    .++|++|+++++ .++.++.  ++.+++|++|++.++ .+..++...     +..++
T Consensus         8 ~~~~l~~~~~~l~~~p~~~----~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~-----~~~l~   76 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPTGI----PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGV-----FDKLT   76 (177)
T ss_dssp             ETTEEECCSSCCSSCCTTC----CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTT-----TTTCT
T ss_pred             CCCEEEecCCCCccCCCCC----CCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCC-cceEeChhH-----ccCCC
Confidence            4577888888888888543    568999999986 6777775  688999999999988 666666543     24688


Q ss_pred             CcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCC----CCCCccEEEeccCc
Q 043667           85 RLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPE----HLPALEMLVIEACK  146 (387)
Q Consensus        85 ~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~----~~~~L~~L~l~~~~  146 (387)
                      +|++|++++. .+.....    ..+..+++|+.|+++++ .+. .+|.    .+++|+.|+++++.
T Consensus        77 ~L~~L~l~~N-~l~~~~~----~~~~~l~~L~~L~l~~N-~l~-~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           77 KLTILYLHEN-KLQSLPN----GVFDKLTQLKELALDTN-QLK-SVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             TCCEEECCSS-CCCCCCT----TTTTTCTTCCEEECCSS-CCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCEEECCCC-CccccCH----HHhhCCcccCEEECcCC-cce-EeCHHHhcCCcccCEEEecCCC
Confidence            9999999874 3444433    33456889999999887 444 3432    36789999998764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.58  E-value=6e-08  Score=97.26  Aligned_cols=106  Identities=13%  Similarity=0.030  Sum_probs=74.7

Q ss_pred             CCCCCCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC-cCCcCCCcEEEecCCCCceEeCccccCCCcc
Q 043667            2 LEPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAA   80 (387)
Q Consensus         2 ~~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~   80 (387)
                      +....+|+.|+++++.+..+|..+..  +++|++|+|++| .++.+|. ++.+++|++|+++++ .+..++..      +
T Consensus       220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~--l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~------~  289 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIFNISANIFK--YDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN-RLTSLPAE------L  289 (727)
T ss_dssp             --CCCCCCEEECTTSCCSCCCGGGGG--CCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS-CCSSCCSS------G
T ss_pred             hccCCCCcEEECCCCCCCCCChhhcC--CCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC-cCCccChh------h
Confidence            34557788888888888788776665  888888888875 6667775 778888888888888 55566554      3


Q ss_pred             cCCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccC
Q 043667           81 IPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRC  123 (387)
Q Consensus        81 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~  123 (387)
                      ..+++|++|+++++ .+....     ..+..+++|+.|+++++
T Consensus       290 ~~l~~L~~L~L~~N-~l~~lp-----~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          290 GSCFQLKYFYFFDN-MVTTLP-----WEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             GGGTTCSEEECCSS-CCCCCC-----SSTTSCTTCCCEECTTS
T ss_pred             cCCCCCCEEECCCC-CCCccC-----hhhhcCCCccEEeCCCC
Confidence            45788888888865 333332     34556788888888776

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.53  E-value=1.3e-07  Score=94.88  Aligned_cols=148  Identities=16%  Similarity=0.120  Sum_probs=72.2

Q ss_pred             CCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCc
Q 043667          201 PQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKL  280 (387)
Q Consensus       201 ~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~  280 (387)
                      ..++.|+.  |.++++. +..++..+ ..+++|++|+|+++ .+..++.     .+..+    ++|+.|+|+++. ++.+
T Consensus       221 ~~l~~L~~--L~Ls~n~-l~~l~~~~-~~l~~L~~L~Ls~N-~l~~lp~-----~~~~l----~~L~~L~Ls~N~-l~~l  285 (727)
T 4b8c_D          221 YDDQLWHA--LDLSNLQ-IFNISANI-FKYDFLTRLYLNGN-SLTELPA-----EIKNL----SNLRVLDLSHNR-LTSL  285 (727)
T ss_dssp             -CCCCCCE--EECTTSC-CSCCCGGG-GGCCSCSCCBCTTS-CCSCCCG-----GGGGG----TTCCEEECTTSC-CSSC
T ss_pred             ccCCCCcE--EECCCCC-CCCCChhh-cCCCCCCEEEeeCC-cCcccCh-----hhhCC----CCCCEEeCcCCc-CCcc
Confidence            34445555  5555443 33455442 35677777777764 4445543     34555    777777777643 5666


Q ss_pred             ccccCCCCCccEEEecCCCCceecCCCC-cCCCceEEEeccCCCCCccccccccCCCCCcceEecccCcccccccCCCCC
Q 043667          281 PQSSLSLSSLREIDIYDCSSLVSFPEVA-LPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGVQLP  359 (387)
Q Consensus       281 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~  359 (387)
                      |..+..+++|+.|++++ +.++.+|... -.++|++|+++++.--..+|..+..... ....+++.++ .++    +..+
T Consensus       286 p~~~~~l~~L~~L~L~~-N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~-~~~~l~l~~N-~l~----~~~p  358 (727)
T 4b8c_D          286 PAELGSCFQLKYFYFFD-NMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV-TGLIFYLRDN-RPE----IPLP  358 (727)
T ss_dssp             CSSGGGGTTCSEEECCS-SCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHH-HHHHHHHHHC-CCC----CCCC
T ss_pred             ChhhcCCCCCCEEECCC-CCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcch-hhhHHhhccC-ccc----CcCc
Confidence            66666777777777776 3566666431 1267777777765422234433221110 0122344442 221    1234


Q ss_pred             CCccEEeecCC
Q 043667          360 PSLKRLDIWNC  370 (387)
Q Consensus       360 ~~L~~L~l~~C  370 (387)
                      ..|+.|+++.+
T Consensus       359 ~~l~~l~l~~n  369 (727)
T 4b8c_D          359 HERRFIEINTD  369 (727)
T ss_dssp             CC---------
T ss_pred             cccceeEeecc
Confidence            56777776654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.52  E-value=5e-08  Score=78.79  Aligned_cols=37  Identities=16%  Similarity=0.190  Sum_probs=19.0

Q ss_pred             cceEecccCcccccccCC--CCCCCccEEeecCCccccc
Q 043667          339 LETLKIERCRSLTYIAGV--QLPPSLKRLDIWNCDNIRT  375 (387)
Q Consensus       339 L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~C~~l~~  375 (387)
                      |++|++++|+++++-...  ..+++|++|++++|++++.
T Consensus       116 L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          116 MLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             CCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred             CCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence            555555555555543222  2345555555555555554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.49  E-value=6.9e-05  Score=69.40  Aligned_cols=278  Identities=14%  Similarity=0.154  Sum_probs=145.9

Q ss_pred             CccEEEeecCCCCCCCCC--cCCcCCCcEEEecCC--CCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCC
Q 043667           32 NLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGM--TSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQ  107 (387)
Q Consensus        32 ~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~--~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  107 (387)
                      .|+.+.+-.  .++.+..  +..+.+|+.+.+...  ..++.++...|     ..+.+|+.+.+.+  ++.....    .
T Consensus        65 ~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF-----~~c~~L~~i~~~~--~~~~I~~----~  131 (394)
T 4gt6_A           65 VLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAF-----MFCSELTDIPILD--SVTEIDS----E  131 (394)
T ss_dssp             CCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTT-----TTCTTCCBCGGGT--TCSEECT----T
T ss_pred             cCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhc-----hhcccceeeccCC--ccceehh----h
Confidence            477888854  3666654  677888888888653  34666665543     3356666665542  2222222    2


Q ss_pred             CccCCCCcceEeeccCcc-cccccCCCCCCccEEEeccCc-ccc-ccccCCCCcceEEEcCccceeEecccccCCCCcEE
Q 043667          108 GVEGFPKLRELHILRCSK-LQGTFPEHLPALEMLVIEACK-ELS-VSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSV  184 (387)
Q Consensus       108 ~i~~~~~L~~L~l~~~~~-l~~~~~~~~~~L~~L~l~~~~-~l~-~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L  184 (387)
                      ....+.+|+.+.+..... +.......+..|+.+.+...- .+. ..+ ...+|+.+.+......-.......+.+++..
T Consensus       132 aF~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF-~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~  210 (394)
T 4gt6_A          132 AFHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDSVTAIEERAF-TGTALTQIHIPAKVTRIGTNAFSECFALSTI  210 (394)
T ss_dssp             TTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTT-TTCCCSEEEECTTCCEECTTTTTTCTTCCEE
T ss_pred             hhhhhcccccccccceeeeecccceecccccccccccceeeEeccccc-cccceeEEEECCcccccccchhhhcccccee
Confidence            223466777777753211 111112235666666664321 111 122 2345666666432211112223334444444


Q ss_pred             eccCCCCcccccCCC-------------CCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhH
Q 043667          185 VCRDTSNQVFLAGPL-------------KPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEE  251 (387)
Q Consensus       185 ~l~~~~~l~~~~~~~-------------~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~  251 (387)
                      ....... .......             ......+..  +.+.  ..+..+....+..+..|+.+.+..  .+..+... 
T Consensus       211 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ip--~~v~~i~~~aF~~c~~L~~i~lp~--~~~~I~~~-  282 (394)
T 4gt6_A          211 TSDSESY-PAIDNVLYEKSANGDYALIRYPSQREDPA--FKIP--NGVARIETHAFDSCAYLASVKMPD--SVVSIGTG-  282 (394)
T ss_dssp             EECCSSS-CBSSSCEEEECTTSCEEEEECCTTCCCSE--EECC--TTEEEECTTTTTTCSSCCEEECCT--TCCEECTT-
T ss_pred             ccccccc-ccccceeecccccccccccccccccccce--EEcC--CcceEcccceeeecccccEEeccc--ccceecCc-
Confidence            3322100 0000000             001111111  2221  223344444566778888888764  34444443 


Q ss_pred             HHHHHhhhhhccCCccEEEeccCCCCCCccc-ccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCccc
Q 043667          252 EKDQQQQLCELSCRLEYLRLRYCKGLVKLPQ-SSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLP  328 (387)
Q Consensus       252 ~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~  328 (387)
                         ++...    ++|+.+.+.  ..++.++. .+..+.+|+.+++..  +++.++...|.  .+|+.+.+-.  +++.+.
T Consensus       283 ---aF~~c----~~L~~i~l~--~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~  349 (394)
T 4gt6_A          283 ---AFMNC----PALQDIEFS--SRITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS--SVTKIP  349 (394)
T ss_dssp             ---TTTTC----TTCCEEECC--TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT--TCCBCC
T ss_pred             ---ccccc----cccccccCC--CcccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc--ccCEEh
Confidence               23332    778888875  34666664 366788899988863  57888877776  6888888853  467765


Q ss_pred             c-ccccCCCCCcceEeccc
Q 043667          329 E-AWMCDTNSSLETLKIER  346 (387)
Q Consensus       329 ~-~~~~~~~~~L~~L~l~~  346 (387)
                      . .+..+.+  |+.+.+.+
T Consensus       350 ~~aF~~C~~--L~~i~~~~  366 (394)
T 4gt6_A          350 ESAFSNCTA--LNNIEYSG  366 (394)
T ss_dssp             GGGGTTCTT--CCEEEESS
T ss_pred             HhHhhCCCC--CCEEEECC
Confidence            3 4556677  88888876

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.43  E-value=1.6e-06  Score=70.40  Aligned_cols=101  Identities=15%  Similarity=0.122  Sum_probs=73.5

Q ss_pred             CCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccCCC
Q 043667            7 NLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFP   84 (387)
Q Consensus         7 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~   84 (387)
                      ..+.++++++....+|..+    .++|++|+++++ .++.+++  ++.+++|++|+++++ .++.++...+     ..++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~----~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f-----~~l~   78 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI----PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVF-----DKLT   78 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC----CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTT-----TTCT
T ss_pred             CCCEEEeCCCCcCccCccC----CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccChhhc-----cCCC
Confidence            4578899999998888755    478999999985 7777754  888999999999998 6777766542     3577


Q ss_pred             CcceeeccccCCccccccCcCCCCccCCCCcceEeeccC
Q 043667           85 RLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRC  123 (387)
Q Consensus        85 ~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~  123 (387)
                      +|++|++++. .+.....    ..+..+++|+.|+++++
T Consensus        79 ~L~~L~L~~N-~l~~~~~----~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           79 QLTQLSLNDN-QLKSIPR----GAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             TCCEEECCSS-CCCCCCT----TTTTTCTTCCEEECCSS
T ss_pred             CCCEEECCCC-ccCEeCH----HHhcCCCCCCEEEeCCC
Confidence            8888888763 3444332    33445677777777765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.43  E-value=1.5e-06  Score=70.74  Aligned_cols=101  Identities=18%  Similarity=0.253  Sum_probs=71.3

Q ss_pred             ccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCc-ccccCCCCCccEEEecCCCCceecCCCCcC-
Q 043667          233 LKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKL-PQSSLSLSSLREIDIYDCSSLVSFPEVALP-  310 (387)
Q Consensus       233 L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~-  310 (387)
                      -+.+++++ ..++.+|..           .+++|++|+++++ .++.+ +..+..+++|+.|++++ +.++.++...+. 
T Consensus        14 ~~~l~~~~-n~l~~iP~~-----------~~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~   79 (174)
T 2r9u_A           14 QTLVNCQN-IRLASVPAG-----------IPTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDK   79 (174)
T ss_dssp             SSEEECCS-SCCSSCCSC-----------CCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTT
T ss_pred             CcEEEeCC-CCCCccCCC-----------cCCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCC-CCCCccChhHhCC
Confidence            36777776 456666643           1278888888875 46666 44577888888999888 578888765443 


Q ss_pred             -CCceEEEeccCCCCCccccc-cccCCCCCcceEecccCcccc
Q 043667          311 -SKLKKIEIRKCDALKSLPEA-WMCDTNSSLETLKIERCRSLT  351 (387)
Q Consensus       311 -~~L~~L~l~~c~~l~~l~~~-~~~~~~~~L~~L~l~~c~~l~  351 (387)
                       ++|++|++++ +.++.++.. +..+.+  |++|+++++ .+.
T Consensus        80 l~~L~~L~L~~-N~l~~l~~~~~~~l~~--L~~L~L~~N-~~~  118 (174)
T 2r9u_A           80 LTQLTQLDLND-NHLKSIPRGAFDNLKS--LTHIYLYNN-PWD  118 (174)
T ss_dssp             CTTCCEEECCS-SCCCCCCTTTTTTCTT--CSEEECCSS-CBC
T ss_pred             cchhhEEECCC-CccceeCHHHhccccC--CCEEEeCCC-Ccc
Confidence             7888888887 457777754 555666  888888884 444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.41  E-value=1.8e-06  Score=70.32  Aligned_cols=100  Identities=11%  Similarity=0.107  Sum_probs=71.6

Q ss_pred             CcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccCCCC
Q 043667            8 LEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPR   85 (387)
Q Consensus         8 L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~   85 (387)
                      -+.++++++....+|..+    .++|++|+++++ .++.+++  ++.+++|++|+++++ .++.++...+     ..+++
T Consensus        14 ~~~l~~~~n~l~~iP~~~----~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~-----~~l~~   82 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGI----PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVF-----DKLTQ   82 (174)
T ss_dssp             SSEEECCSSCCSSCCSCC----CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT-----TTCTT
T ss_pred             CcEEEeCCCCCCccCCCc----CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCC-CCCccChhHh-----CCcch
Confidence            467888888888888755    368999999985 6777754  788999999999998 7777765532     35778


Q ss_pred             cceeeccccCCccccccCcCCCCccCCCCcceEeeccC
Q 043667           86 LETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRC  123 (387)
Q Consensus        86 L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~  123 (387)
                      |++|++++. .+.....    ..+..+++|+.|+++++
T Consensus        83 L~~L~L~~N-~l~~l~~----~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           83 LTQLDLNDN-HLKSIPR----GAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             CCEEECCSS-CCCCCCT----TTTTTCTTCSEEECCSS
T ss_pred             hhEEECCCC-ccceeCH----HHhccccCCCEEEeCCC
Confidence            888888763 3433332    33445677777777665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.40  E-value=3.2e-07  Score=74.05  Aligned_cols=86  Identities=9%  Similarity=0.141  Sum_probs=50.9

Q ss_pred             EEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhh---ccCCccEEEeccCCCCCCcc-cccCC
Q 043667          211 LSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCE---LSCRLEYLRLRYCKGLVKLP-QSSLS  286 (387)
Q Consensus       211 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~---~~~~L~~L~l~~c~~l~~~~-~~~~~  286 (387)
                      +++++|. ++......+..+++|++|++++|..+++..       +..+..   .+++|++|++++|+++++-- ..+..
T Consensus        66 LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~g-------L~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~  137 (176)
T 3e4g_A           66 IDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGC-------LERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH  137 (176)
T ss_dssp             EEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHH-------HHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred             EeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHH-------HHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence            6666655 443333334567778888888777776542       222221   12467777777777776521 12445


Q ss_pred             CCCccEEEecCCCCceec
Q 043667          287 LSSLREIDIYDCSSLVSF  304 (387)
Q Consensus       287 ~~~L~~L~l~~c~~l~~~  304 (387)
                      +++|+.|++++|+.+++.
T Consensus       138 ~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          138 FRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             CTTCCEEEEESCTTCCCH
T ss_pred             CCCCCEEECCCCCCCCch
Confidence            677777777777776653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.36  E-value=2.5e-06  Score=69.14  Aligned_cols=99  Identities=19%  Similarity=0.245  Sum_probs=70.8

Q ss_pred             CccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCc-ccccCCCCCccEEEecCCCCceecCCCCcC
Q 043667          232 SLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKL-PQSSLSLSSLREIDIYDCSSLVSFPEVALP  310 (387)
Q Consensus       232 ~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~  310 (387)
                      +.+.+++++ ..+..+|..           .+++|++|+++++ .++.+ +..+..+++|+.|++++ +.++.++...+.
T Consensus        10 ~~~~l~~s~-n~l~~ip~~-----------~~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~   75 (170)
T 3g39_A           10 SGTTVDCSG-KSLASVPTG-----------IPTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDN-NQLTVLPAGVFD   75 (170)
T ss_dssp             ETTEEECTT-SCCSSCCSC-----------CCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTT
T ss_pred             CCCEEEeCC-CCcCccCcc-----------CCCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCC-CCcCccChhhcc
Confidence            467888887 456666643           1278888888874 46666 44577888888888887 578887765543


Q ss_pred             --CCceEEEeccCCCCCccccc-cccCCCCCcceEecccC
Q 043667          311 --SKLKKIEIRKCDALKSLPEA-WMCDTNSSLETLKIERC  347 (387)
Q Consensus       311 --~~L~~L~l~~c~~l~~l~~~-~~~~~~~~L~~L~l~~c  347 (387)
                        ++|++|+++++ .++.++.. +..+.+  |++|++++.
T Consensus        76 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~--L~~L~L~~N  112 (170)
T 3g39_A           76 KLTQLTQLSLNDN-QLKSIPRGAFDNLKS--LTHIWLLNN  112 (170)
T ss_dssp             TCTTCCEEECCSS-CCCCCCTTTTTTCTT--CCEEECCSS
T ss_pred             CCCCCCEEECCCC-ccCEeCHHHhcCCCC--CCEEEeCCC
Confidence              78888888874 57777653 555666  888888884

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.35  E-value=0.00036  Score=64.48  Aligned_cols=293  Identities=13%  Similarity=0.145  Sum_probs=164.6

Q ss_pred             cCCcC-CCcEEEecCCCCceEeCccccCCCcccCCCCcceeecccc--CCccccccCcCCCCccCCCCcceEeeccCc-c
Q 043667           50 VGQLP-SLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAM--LGWEDWIPLRSGQGVEGFPKLRELHILRCS-K  125 (387)
Q Consensus        50 ~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~-~  125 (387)
                      +..+. .|+.+.+..  .++.++...|     ..+.+|+.+.+.+.  ..++....    .....+.+|+.+.+.... .
T Consensus        59 F~~~~~~L~sI~iP~--svt~Ig~~AF-----~~C~~L~~i~~~~n~p~~l~~Ig~----~aF~~c~~L~~i~~~~~~~~  127 (394)
T 4gt6_A           59 FCNYKYVLTSVQIPD--TVTEIGSNAF-----YNCTSLKRVTIQDNKPSCVKKIGR----QAFMFCSELTDIPILDSVTE  127 (394)
T ss_dssp             TTTCCSCCCEEEECT--TCCEECTTTT-----TTCTTCCEEEEGGGCCCCCCEECT----TTTTTCTTCCBCGGGTTCSE
T ss_pred             ccCCCCcCEEEEECC--CeeEEhHHHh-----hCCccCceEeecCCCCCeeeEech----hhchhcccceeeccCCccce
Confidence            44553 588888864  4777776543     45899999998753  23444332    334457788877664321 1


Q ss_pred             cccccCCCCCCccEEEeccCc-ccc-ccccCCCCcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCC
Q 043667          126 LQGTFPEHLPALEMLVIEACK-ELS-VSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQL  203 (387)
Q Consensus       126 l~~~~~~~~~~L~~L~l~~~~-~l~-~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l  203 (387)
                      +.......+.+|+.+.+...- .+. ..+..+.+|+.+.+.+.- ..+....-...+|+.+.+-.  .+..+.......+
T Consensus       128 I~~~aF~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~~-~~I~~~aF~~~~l~~i~ip~--~~~~i~~~af~~c  204 (394)
T 4gt6_A          128 IDSEAFHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDSV-TAIEERAFTGTALTQIHIPA--KVTRIGTNAFSEC  204 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCCCSEEEECT--TCCEECTTTTTTC
T ss_pred             ehhhhhhhhcccccccccceeeeecccceeccccccccccccee-eEeccccccccceeEEEECC--cccccccchhhhc
Confidence            111222347889999886432 222 456778899988886431 11222222235677777653  2233333334445


Q ss_pred             ccccceeEEEcCCCCcccccccccc-------------cCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEE
Q 043667          204 PKLEELILSTKEQTYIWKSHDGLLQ-------------DICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLR  270 (387)
Q Consensus       204 ~~L~~l~L~l~~~~~~~~~~~~~l~-------------~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~  270 (387)
                      ..+..  +...... ........+.             ....+..+.+.  ..+..+...    +|..    +.+|+++.
T Consensus       205 ~~l~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip--~~v~~i~~~----aF~~----c~~L~~i~  271 (394)
T 4gt6_A          205 FALST--ITSDSES-YPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP--NGVARIETH----AFDS----CAYLASVK  271 (394)
T ss_dssp             TTCCE--EEECCSS-SCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC--TTEEEECTT----TTTT----CSSCCEEE
T ss_pred             cccce--ecccccc-cccccceeecccccccccccccccccccceEEcC--CcceEcccc----eeee----cccccEEe
Confidence            55554  4333211 1111111010             11233344432  234444332    2332    27788888


Q ss_pred             eccCCCCCCccc-ccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCcccc-ccccCCCCCcceEeccc
Q 043667          271 LRYCKGLVKLPQ-SSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPE-AWMCDTNSSLETLKIER  346 (387)
Q Consensus       271 l~~c~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~-~~~~~~~~~L~~L~l~~  346 (387)
                      +.+  .++.+.. .+..+++|+.+.+.  ..++.++...|.  .+|+.+++..  +++.+.. .+..+.+  |+++.+-.
T Consensus       272 lp~--~~~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~--L~~i~ip~  343 (394)
T 4gt6_A          272 MPD--SVVSIGTGAFMNCPALQDIEFS--SRITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQ--LERIAIPS  343 (394)
T ss_dssp             CCT--TCCEECTTTTTTCTTCCEEECC--TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTT--CCEEEECT
T ss_pred             ccc--ccceecCcccccccccccccCC--CcccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCC--CCEEEECc
Confidence            754  2344443 36688999999996  578899988877  7999999964  4777764 5566777  99999954


Q ss_pred             CcccccccCC--CCCCCccEEeec----------CCccccccccc
Q 043667          347 CRSLTYIAGV--QLPPSLKRLDIW----------NCDNIRTLTVE  379 (387)
Q Consensus       347 c~~l~~~~~~--~~~~~L~~L~l~----------~C~~l~~l~~~  379 (387)
                        .++.++..  ....+|+.+++.          +|..|++++..
T Consensus       344 --sv~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~  386 (394)
T 4gt6_A          344 --SVTKIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVA  386 (394)
T ss_dssp             --TCCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC------
T ss_pred             --ccCEEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeC
Confidence              47776655  456788888875          45566665543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.22  E-value=1.1e-07  Score=79.31  Aligned_cols=123  Identities=15%  Similarity=0.130  Sum_probs=77.7

Q ss_pred             EEEcCC-CCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCC
Q 043667          211 LSTKEQ-TYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSS  289 (387)
Q Consensus       211 L~l~~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~  289 (387)
                      ..+... +.++.++.. ++.+++|++|+++++ .+..++      .+..+    ++|++|++++| .++.+|..+..+++
T Consensus        28 ~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n-~l~~l~------~~~~l----~~L~~L~l~~n-~l~~l~~~~~~~~~   94 (198)
T 1ds9_A           28 VELHGMIPPIEKMDAT-LSTLKACKHLALSTN-NIEKIS------SLSGM----ENLRILSLGRN-LIKKIENLDAVADT   94 (198)
T ss_dssp             EECCBCCTTCCCCHHH-HHHTTTCSEEECSEE-EESCCC------CHHHH----TTCCEEEEEEE-EECSCSSHHHHHHH
T ss_pred             eEeccccCcHhhhhHH-HhcCCCCCEEECCCC-CCcccc------ccccC----CCCCEEECCCC-CcccccchhhcCCc
Confidence            444432 234444443 567788888888774 455544      24455    88888888875 46677766666678


Q ss_pred             ccEEEecCCCCceecCCCCcCCCceEEEeccCCCCCcccc--ccccCCCCCcceEecccCcccc
Q 043667          290 LREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPE--AWMCDTNSSLETLKIERCRSLT  351 (387)
Q Consensus       290 L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~~~~~~~L~~L~l~~c~~l~  351 (387)
                      |+.|+++++ .++.++.....++|++|+++++. ++.++.  .+..+++  |++|+++++ .++
T Consensus        95 L~~L~L~~N-~l~~l~~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~--L~~L~l~~N-~l~  153 (198)
T 1ds9_A           95 LEELWISYN-QIASLSGIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDK--LEDLLLAGN-PLY  153 (198)
T ss_dssp             CSEEEEEEE-ECCCHHHHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTT--CSEEEECSC-HHH
T ss_pred             CCEEECcCC-cCCcCCccccCCCCCEEECCCCc-CCchhHHHHHhcCCC--CCEEEecCC-ccc
Confidence            888888874 66666522222778888888743 666543  4445566  888888885 443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.19  E-value=3.9e-08  Score=82.17  Aligned_cols=99  Identities=16%  Similarity=0.092  Sum_probs=45.1

Q ss_pred             CCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcC-CCceEEEeccCCCCCccccccccCCCCCcceE
Q 043667          264 CRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALP-SKLKKIEIRKCDALKSLPEAWMCDTNSSLETL  342 (387)
Q Consensus       264 ~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L  342 (387)
                      ++|++|+++++ .++.++ .+..+++|+.|+++++ .++.++..... ++|++|++++| .++.++ .+..+++  |++|
T Consensus        48 ~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~--L~~L  120 (198)
T 1ds9_A           48 KACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVN--LRVL  120 (198)
T ss_dssp             TTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHH--SSEE
T ss_pred             CCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCC--CCEE
Confidence            55555555543 244444 4444555555555542 34444321111 45555555553 344444 2333334  5555


Q ss_pred             ecccCcccccccC--C-CCCCCccEEeecCC
Q 043667          343 KIERCRSLTYIAG--V-QLPPSLKRLDIWNC  370 (387)
Q Consensus       343 ~l~~c~~l~~~~~--~-~~~~~L~~L~l~~C  370 (387)
                      +++++ .++.++.  . ..+++|++|+++++
T Consensus       121 ~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N  150 (198)
T 1ds9_A          121 YMSNN-KITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             EESEE-ECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred             ECCCC-cCCchhHHHHHhcCCCCCEEEecCC
Confidence            55553 4444332  1 33455555555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.15  E-value=0.00073  Score=61.99  Aligned_cols=284  Identities=12%  Similarity=0.109  Sum_probs=156.8

Q ss_pred             CCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCC
Q 043667           30 FSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQ  107 (387)
Q Consensus        30 l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  107 (387)
                      ..+|+.+.+..  .++.++.  +..+.+|+.+.+..  .++.++...|..     + +|+.+.+-  .+++....    .
T Consensus        45 ~~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~-----c-~l~~i~~~--~~l~~I~~----~  108 (379)
T 4h09_A           45 RDRISEVRVNS--GITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFAD-----T-KLQSYTGM--ERVKKFGD----Y  108 (379)
T ss_dssp             GGGCSEEEECT--TEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTT-----C-CCCEEEEC--TTCCEECT----T
T ss_pred             ccCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCC--cceEechhhhcC-----C-CCceEECC--ceeeEecc----c
Confidence            56899999864  5677765  78899999999964  477787665442     2 45555543  22222221    2


Q ss_pred             CccCCCCcceEeeccCcccccccCCCCCCccEEEeccCc-ccc-ccccCCCCcceEEEcCccceeEe-------------
Q 043667          108 GVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACK-ELS-VSVSSLPALCKLKIGGCKKVVWR-------------  172 (387)
Q Consensus       108 ~i~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~-~l~-~~~~~~~~L~~L~i~~~~~~~~~-------------  172 (387)
                      ... ..+|+.+.+.......+...-.-.+++.+.+...- .+. ..+..+.+++.+.+.........             
T Consensus       109 aF~-~~~L~~i~lp~~~~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (379)
T 4h09_A          109 VFQ-GTDLDDFEFPGATTEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTIL  187 (379)
T ss_dssp             TTT-TCCCSEEECCTTCCEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEE
T ss_pred             eec-cCCcccccCCCccccccccccccceeeeeeccceeeccccchhcccccccccccccccceeecccceeccccccee
Confidence            222 23677777754311111111011245555443321 111 34556667777766543322211             


Q ss_pred             cccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHH
Q 043667          173 SATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEE  252 (387)
Q Consensus       173 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~  252 (387)
                      ........+..+.+..  ...............|+.  +.+..  .+..+....+..+..|+.+.+..  .+..+...  
T Consensus       188 ~~~~~~~~~~~~~~~~--~~~~i~~~~f~~~~~l~~--i~~~~--~~~~i~~~~f~~~~~L~~i~lp~--~v~~I~~~--  257 (379)
T 4h09_A          188 ESYPAAKTGTEFTIPS--TVKTVTAYGFSYGKNLKK--ITITS--GVTTLGDGAFYGMKALDEIAIPK--NVTSIGSF--  257 (379)
T ss_dssp             EECCTTCCCSEEECCT--TCCEECTTTTTTCSSCSE--EECCT--TCCEECTTTTTTCSSCCEEEECT--TCCEECTT--
T ss_pred             cccccccccccccccc--ceeEEeecccccccccce--eeecc--ceeEEccccccCCccceEEEcCC--CccEeCcc--
Confidence            1111122333333322  112222222344556665  66543  34455555566788899988864  46666544  


Q ss_pred             HHHHhhhhhccCCccEEEeccCCCCCCccc-ccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCcccc
Q 043667          253 KDQQQQLCELSCRLEYLRLRYCKGLVKLPQ-SSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPE  329 (387)
Q Consensus       253 ~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~  329 (387)
                        ++...    .+|+.+.+..  .++.++. .+..+++|+.+.+.+ ..++.++...|.  .+|+.+.+..  +++.+..
T Consensus       258 --aF~~~----~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~  326 (379)
T 4h09_A          258 --LLQNC----TALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPT--ALKTIQV  326 (379)
T ss_dssp             --TTTTC----TTCCEEEECC--CCSEECTTTTTTCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECCT--TCCEECT
T ss_pred             --cccee----ehhccccccc--cceeccccccccccccccccccc-cccceehhhhhcCCCCCCEEEcCc--cccEEHH
Confidence              23333    7888888853  3565654 366888999999975 468888877776  6888888853  4676654


Q ss_pred             -ccccCCCCCcceEecccCcccccccC
Q 043667          330 -AWMCDTNSSLETLKIERCRSLTYIAG  355 (387)
Q Consensus       330 -~~~~~~~~~L~~L~l~~c~~l~~~~~  355 (387)
                       .+..+.+  |+.+.+-.  +++.+..
T Consensus       327 ~aF~~C~~--L~~i~ip~--~v~~I~~  349 (379)
T 4h09_A          327 YAFKNCKA--LSTISYPK--SITLIES  349 (379)
T ss_dssp             TTTTTCTT--CCCCCCCT--TCCEECT
T ss_pred             HHhhCCCC--CCEEEECC--ccCEEch
Confidence             4455566  77776643  3555543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.05  E-value=0.003  Score=57.87  Aligned_cols=277  Identities=11%  Similarity=0.118  Sum_probs=150.4

Q ss_pred             cCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccc
Q 043667           50 VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGT  129 (387)
Q Consensus        50 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~  129 (387)
                      .....+|+.+.+.  .+++.|+...|     ..+.+|+.+.+..  .++....    .....+ +|+.+.+...  +. .
T Consensus        42 ~~~~~~i~~v~ip--~~vt~Ig~~aF-----~~C~~L~~I~lp~--~v~~Ig~----~aF~~c-~l~~i~~~~~--l~-~  104 (379)
T 4h09_A           42 YKDRDRISEVRVN--SGITSIGEANF-----NSCYNMTKVTVAS--TVTSIGD----GAFADT-KLQSYTGMER--VK-K  104 (379)
T ss_dssp             GGGGGGCSEEEEC--TTEEEECTTTT-----TTCTTCCEEEECT--TCCEECT----TTTTTC-CCCEEEECTT--CC-E
T ss_pred             cccccCCEEEEeC--CCccChHHHHh-----hCCCCCCEEEeCC--cceEech----hhhcCC-CCceEECCce--ee-E
Confidence            4456789999886  36888877653     4589999999863  2333322    333334 5666666432  22 1


Q ss_pred             cCC---CCCCccEEEeccCc-ccc-ccccCCCCcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCC-----
Q 043667          130 FPE---HLPALEMLVIEACK-ELS-VSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPL-----  199 (387)
Q Consensus       130 ~~~---~~~~L~~L~l~~~~-~l~-~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-----  199 (387)
                      +..   ...+|+.+++...- .+. ..+.. .+++.+.+...-..-.......+.+++.+.+.............     
T Consensus       105 I~~~aF~~~~L~~i~lp~~~~~i~~~~F~~-~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  183 (379)
T 4h09_A          105 FGDYVFQGTDLDDFEFPGATTEIGNYIFYN-SSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKN  183 (379)
T ss_dssp             ECTTTTTTCCCSEEECCTTCCEECTTTTTT-CCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETT
T ss_pred             eccceeccCCcccccCCCcccccccccccc-ceeeeeeccceeeccccchhcccccccccccccccceeecccceecccc
Confidence            211   12478888886532 121 22333 35666655432111112233445666666655432211100000     


Q ss_pred             ------CCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEecc
Q 043667          200 ------KPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRY  273 (387)
Q Consensus       200 ------~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~  273 (387)
                            ......+..  +.+..  ....+....+..+.+|+.+.+..  .+..+...    ++..    +..|+++.+-.
T Consensus       184 ~~~~~~~~~~~~~~~--~~~~~--~~~~i~~~~f~~~~~l~~i~~~~--~~~~i~~~----~f~~----~~~L~~i~lp~  249 (379)
T 4h09_A          184 KTILESYPAAKTGTE--FTIPS--TVKTVTAYGFSYGKNLKKITITS--GVTTLGDG----AFYG----MKALDEIAIPK  249 (379)
T ss_dssp             SSEEEECCTTCCCSE--EECCT--TCCEECTTTTTTCSSCSEEECCT--TCCEECTT----TTTT----CSSCCEEEECT
T ss_pred             cceeccccccccccc--ccccc--ceeEEeecccccccccceeeecc--ceeEEccc----cccC----CccceEEEcCC
Confidence                  112222222  33222  12222233344567788888764  45555443    2332    27888888854


Q ss_pred             CCCCCCccc-ccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCcccc-ccccCCCCCcceEecccCcc
Q 043667          274 CKGLVKLPQ-SSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPE-AWMCDTNSSLETLKIERCRS  349 (387)
Q Consensus       274 c~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~-~~~~~~~~~L~~L~l~~c~~  349 (387)
                        .++.+.. .+..+.+|+.+.+.  .+++.++...+.  .+|+.+.+.+ ..++.+.. .+..+.+  |+.+.+..  +
T Consensus       250 --~v~~I~~~aF~~~~~l~~i~l~--~~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~--L~~i~lp~--~  320 (379)
T 4h09_A          250 --NVTSIGSFLLQNCTALKTLNFY--AKVKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFMDCVK--LSSVTLPT--A  320 (379)
T ss_dssp             --TCCEECTTTTTTCTTCCEEEEC--CCCSEECTTTTTTCTTCCEEEECC-TTCCEECTTTTTTCTT--CCEEECCT--T
T ss_pred             --CccEeCccccceeehhcccccc--ccceeccccccccccccccccccc-cccceehhhhhcCCCC--CCEEEcCc--c
Confidence              3566554 35678899999996  467888877766  7899999975 34777764 4555677  88888854  3


Q ss_pred             cccccCC--CCCCCccEEee
Q 043667          350 LTYIAGV--QLPPSLKRLDI  367 (387)
Q Consensus       350 l~~~~~~--~~~~~L~~L~l  367 (387)
                      ++.++..  ....+|+.+++
T Consensus       321 l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          321 LKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             CCEECTTTTTTCTTCCCCCC
T ss_pred             ccEEHHHHhhCCCCCCEEEE
Confidence            5555543  22344444443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.03  E-value=2.1e-05  Score=71.51  Aligned_cols=79  Identities=23%  Similarity=0.231  Sum_probs=45.5

Q ss_pred             CCccEEEeccCCCCCCccc-ccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCccccccccCCCCCcc
Q 043667          264 CRLEYLRLRYCKGLVKLPQ-SSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPEAWMCDTNSSLE  340 (387)
Q Consensus       264 ~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~  340 (387)
                      .+|++|+|++++.++.++. .+..+++|+.|++++ +.++.++...+.  ++|+.|++++ +.+..+|........  |+
T Consensus        31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~~~--L~  106 (347)
T 2ifg_A           31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLSF-NALESLSWKTVQGLS--LQ  106 (347)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECCS-SCCSCCCSTTTCSCC--CC
T ss_pred             CCeeEEEccCCCCCCCcChhHhccccCCCEEECCC-CccceeCHHHhcCCcCCCEEeCCC-CccceeCHHHcccCC--ce
Confidence            5566666665345555553 455666666666666 356666544332  6666666665 346666554333333  66


Q ss_pred             eEeccc
Q 043667          341 TLKIER  346 (387)
Q Consensus       341 ~L~l~~  346 (387)
                      .|++.+
T Consensus       107 ~l~l~~  112 (347)
T 2ifg_A          107 ELVLSG  112 (347)
T ss_dssp             EEECCS
T ss_pred             EEEeeC
Confidence            666666

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.00  E-value=1.1e-05  Score=73.68  Aligned_cols=63  Identities=17%  Similarity=0.086  Sum_probs=33.0

Q ss_pred             cCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCC-----cccccCCCCCccEEEecCC
Q 043667          229 DICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVK-----LPQSSLSLSSLREIDIYDC  298 (387)
Q Consensus       229 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~-----~~~~~~~~~~L~~L~l~~c  298 (387)
                      .+|+|++|.+.+|.........    ....  ..+++|++|+++.+ .+++     ++..+..+++|+.|++++|
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~----la~a--~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEM----FLES--DILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHH----HHHC--SSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             CCCCcCEEeCCCCCCchHHHHH----HHhC--ccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCC
Confidence            4677777777765433221111    0110  02367777777653 3443     3333445677777777764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.99  E-value=2.9e-05  Score=70.49  Aligned_cols=100  Identities=18%  Similarity=0.153  Sum_probs=71.1

Q ss_pred             cEEEEcCc-CCCCCCCccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccCCCC
Q 043667            9 EQFCISGY-RGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPR   85 (387)
Q Consensus         9 ~~L~l~~~-~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~   85 (387)
                      ..++.++. ....+|. +..  +++|+.|+|++++.++.++.  ++.+++|++|+++++ .+..++...     +..+++
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~--~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~-----~~~l~~   81 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPG--AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDA-----FHFTPR   81 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCS--CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTG-----GGSCSC
T ss_pred             CEEEcCCCCCCCccCC-CCC--CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHH-----hcCCcC
Confidence            35677776 7788888 776  88999999986457888875  888999999999998 677776654     245788


Q ss_pred             cceeeccccCCccccccCcCCCCccCCCCcceEeeccC
Q 043667           86 LETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRC  123 (387)
Q Consensus        86 L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~  123 (387)
                      |++|++++. .+.....    ..+..++ |+.|++.++
T Consensus        82 L~~L~l~~N-~l~~~~~----~~~~~~~-L~~l~l~~N  113 (347)
T 2ifg_A           82 LSRLNLSFN-ALESLSW----KTVQGLS-LQELVLSGN  113 (347)
T ss_dssp             CCEEECCSS-CCSCCCS----TTTCSCC-CCEEECCSS
T ss_pred             CCEEeCCCC-ccceeCH----HHcccCC-ceEEEeeCC
Confidence            888888863 3444332    2222233 778887765

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.89  E-value=9.5e-06  Score=74.07  Aligned_cols=61  Identities=20%  Similarity=0.113  Sum_probs=37.2

Q ss_pred             cCCccEEEeccCCCCCCcccc---cCCCCCccEEEecCCCCceec-----CCC-CcCCCceEEEeccCCCCC
Q 043667          263 SCRLEYLRLRYCKGLVKLPQS---SLSLSSLREIDIYDCSSLVSF-----PEV-ALPSKLKKIEIRKCDALK  325 (387)
Q Consensus       263 ~~~L~~L~l~~c~~l~~~~~~---~~~~~~L~~L~l~~c~~l~~~-----~~~-~~~~~L~~L~l~~c~~l~  325 (387)
                      +|+|+.|++.+|.........   ...+++|+.|+++. +.++..     ... ...++|+.|++++|. +.
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~  320 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNY-LS  320 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBB-CC
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCc-CC
Confidence            488999999876522111111   13578899999976 456552     221 112789999998764 44

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.84  E-value=1.6e-06  Score=79.72  Aligned_cols=12  Identities=17%  Similarity=0.354  Sum_probs=6.0

Q ss_pred             CCccEEEeccCc
Q 043667          135 PALEMLVIEACK  146 (387)
Q Consensus       135 ~~L~~L~l~~~~  146 (387)
                      +.|+.|++++|.
T Consensus        72 ~~L~~L~Ls~n~   83 (372)
T 3un9_A           72 SSLRQLNLAGVR   83 (372)
T ss_dssp             TTCCEEECTTSC
T ss_pred             hhCCEEEecCCC
Confidence            445555555543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.80  E-value=2.4e-06  Score=78.51  Aligned_cols=83  Identities=18%  Similarity=0.171  Sum_probs=39.3

Q ss_pred             CCccEEEeccCCCCCC-----cccccCCCCCccEEEecCCCCceecCCC------CcCCCceEEEeccCCCCCc-----c
Q 043667          264 CRLEYLRLRYCKGLVK-----LPQSSLSLSSLREIDIYDCSSLVSFPEV------ALPSKLKKIEIRKCDALKS-----L  327 (387)
Q Consensus       264 ~~L~~L~l~~c~~l~~-----~~~~~~~~~~L~~L~l~~c~~l~~~~~~------~~~~~L~~L~l~~c~~l~~-----l  327 (387)
                      ++|++|++++|. +++     +...+...++|+.|++++| .+++....      ...++|++|++++|. +++     +
T Consensus       155 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l  231 (372)
T 3un9_A          155 CQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALAL  231 (372)
T ss_dssp             CCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHH
T ss_pred             CccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHH
Confidence            556666666653 332     2223345556666666653 34432100      111456666666643 432     2


Q ss_pred             ccccccCCCCCcceEecccCccccc
Q 043667          328 PEAWMCDTNSSLETLKIERCRSLTY  352 (387)
Q Consensus       328 ~~~~~~~~~~~L~~L~l~~c~~l~~  352 (387)
                      +..+...+.  |++|++++| .+++
T Consensus       232 ~~~L~~~~~--L~~L~Ls~N-~i~~  253 (372)
T 3un9_A          232 ARAAREHPS--LELLHLYFN-ELSS  253 (372)
T ss_dssp             HHHHHHCSS--CCEEECTTS-SCCH
T ss_pred             HHHHHhCCC--CCEEeccCC-CCCH
Confidence            222223344  666666664 4443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.29  E-value=6.2e-05  Score=61.77  Aligned_cols=66  Identities=5%  Similarity=0.027  Sum_probs=32.6

Q ss_pred             cccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCC-----cccccCCCCCccEEEecC
Q 043667          227 LQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVK-----LPQSSLSLSSLREIDIYD  297 (387)
Q Consensus       227 l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~-----~~~~~~~~~~L~~L~l~~  297 (387)
                      +...++|++|++++|..+.+.....+...+...    ++|++|++++|. +.+     +...+...++|+.|++++
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~----~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~  102 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTN----TYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVES  102 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTC----CSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhC----CCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcC
Confidence            345566777777765344443222222222222    566677766653 332     222233445566666665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.66  E-value=0.00096  Score=54.51  Aligned_cols=88  Identities=20%  Similarity=0.106  Sum_probs=51.2

Q ss_pred             cccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCC-----cccccCCCCCccEEEe--cCCC
Q 043667          227 LQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVK-----LPQSSLSLSSLREIDI--YDCS  299 (387)
Q Consensus       227 l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~-----~~~~~~~~~~L~~L~l--~~c~  299 (387)
                      +...++|++|+++++ .+.+.....+...+...    ++|++|++++|. +++     +...+...++|+.|++  ++ +
T Consensus        61 L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n----~~L~~L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N  133 (185)
T 1io0_A           61 LKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVN----NTLKSLNVESNF-ISGSGILALVEALQSNTSLIELRIDNQS-Q  133 (185)
T ss_dssp             HTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHC----SSCCEEECCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCS-S
T ss_pred             HHhCCCcCEEECcCC-CCChHHHHHHHHHHHhC----CCcCEEECcCCc-CCHHHHHHHHHHHHhCCCceEEEecCCC-C
Confidence            445688999999986 45543332223334433    789999998864 543     3445566677888888  44 4


Q ss_pred             CceecCCCCc------CCCceEEEeccC
Q 043667          300 SLVSFPEVAL------PSKLKKIEIRKC  321 (387)
Q Consensus       300 ~l~~~~~~~~------~~~L~~L~l~~c  321 (387)
                      .++.-....+      .++|++|++++|
T Consensus       134 ~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          134 PLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             CCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             CCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            4443221111      155666666554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.56  E-value=0.00052  Score=59.47  Aligned_cols=34  Identities=26%  Similarity=0.363  Sum_probs=17.6

Q ss_pred             CCCccEEEeecCCCCCCCCC----cCCcCCCcEEEecCC
Q 043667           30 FSNLVTLKFEYCGMCPTLPS----VGQLPSLKHLAVCGM   64 (387)
Q Consensus        30 l~~L~~L~l~~c~~~~~l~~----~~~l~~L~~L~l~~~   64 (387)
                      +++|++|+++++ .+..++.    ++.+++|+.|+++++
T Consensus       169 l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N  206 (267)
T 3rw6_A          169 IPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN  206 (267)
T ss_dssp             CTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred             CCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC
Confidence            555566666553 4444332    224555666666555

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.43  E-value=0.015  Score=50.16  Aligned_cols=58  Identities=19%  Similarity=0.135  Sum_probs=33.5

Q ss_pred             cCCccEEEeccCCCCCCcc---cccCCCCCccEEEecCCCCceecCCCCcCC--CceEEEeccCC
Q 043667          263 SCRLEYLRLRYCKGLVKLP---QSSLSLSSLREIDIYDCSSLVSFPEVALPS--KLKKIEIRKCD  322 (387)
Q Consensus       263 ~~~L~~L~l~~c~~l~~~~---~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~--~L~~L~l~~c~  322 (387)
                      +++|++|+++++ .++.++   ..+..+++|+.|++++ +.++.+.......  +|++|++.+++
T Consensus       169 l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l~L~~L~L~~Np  231 (267)
T 3rw6_A          169 IPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNS  231 (267)
T ss_dssp             CTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGGTTSCCSEEECTTST
T ss_pred             CCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhcccCCcceEEccCCc
Confidence            377888888774 355443   3344677777777776 5555543221112  56666666654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=93.96  E-value=0.023  Score=46.44  Aligned_cols=111  Identities=14%  Similarity=0.079  Sum_probs=55.9

Q ss_pred             ccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCC-----cccccCCCCCccEEEecCCCCce
Q 043667          228 QDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVK-----LPQSSLSLSSLREIDIYDCSSLV  302 (387)
Q Consensus       228 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~-----~~~~~~~~~~L~~L~l~~c~~l~  302 (387)
                      ..-++|++|+++++..+.+-....+..++..-    ..|++|++++|. +.+     +...+..-+.|+.|++++ +.|.
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N----~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~-N~Ig  111 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNS----KHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVES-NFLT  111 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC----SCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCS-SBCC
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhC----CCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCC-CcCC
Confidence            34567888888764444443222222233322    677777777654 332     233344456677777776 4554


Q ss_pred             ecCCC------CcCCCceEEEeccCCC--CCc-----cccccccCCCCCcceEeccc
Q 043667          303 SFPEV------ALPSKLKKIEIRKCDA--LKS-----LPEAWMCDTNSSLETLKIER  346 (387)
Q Consensus       303 ~~~~~------~~~~~L~~L~l~~c~~--l~~-----l~~~~~~~~~~~L~~L~l~~  346 (387)
                      .-...      .....|++|+++++..  +..     +.+.+..-+.  |++|+++.
T Consensus       112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~t--L~~L~l~~  166 (197)
T 1pgv_A          112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENES--LLRVGISF  166 (197)
T ss_dssp             HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSS--CCEEECCC
T ss_pred             HHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCC--cCeEeccC
Confidence            32211      1125577777765422  221     3333333334  77776654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=89.94  E-value=0.58  Score=35.25  Aligned_cols=51  Identities=18%  Similarity=0.152  Sum_probs=33.9

Q ss_pred             EEEEcCcCCC--CCCCccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCC
Q 043667           10 QFCISGYRGA--KFPTWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMT   65 (387)
Q Consensus        10 ~L~l~~~~~~--~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~   65 (387)
                      .++-++....  .+|..+    -++|+.|+|+++ .++.+|.  +..+++|+.|++.+++
T Consensus        12 ~v~Cs~~~L~~~~vP~~l----p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF----PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC----CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCCCCCccccCCCCC----CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence            4445555555  667543    236888888874 7777775  6677788888887764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=89.84  E-value=0.48  Score=35.75  Aligned_cols=51  Identities=22%  Similarity=0.306  Sum_probs=35.9

Q ss_pred             EEEecCCCCce--ecCCCCcCCCceEEEeccCCCCCccccc-cccCCCCCcceEecccC
Q 043667          292 EIDIYDCSSLV--SFPEVALPSKLKKIEIRKCDALKSLPEA-WMCDTNSSLETLKIERC  347 (387)
Q Consensus       292 ~L~l~~c~~l~--~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~~~L~~L~l~~c  347 (387)
                      .++-++ .+++  .+|. .++++|++|++++ +.++.++.. +.....  |++|++.+.
T Consensus        12 ~v~Cs~-~~L~~~~vP~-~lp~~l~~L~Ls~-N~l~~l~~~~f~~l~~--L~~L~L~~N   65 (130)
T 3rfe_A           12 LVDCGR-RGLTWASLPT-AFPVDTTELVLTG-NNLTALPPGLLDALPA--LRTAHLGAN   65 (130)
T ss_dssp             EEECCS-SCCCTTTSCS-CCCTTCSEEECTT-SCCSSCCTTTGGGCTT--CCEEECCSS
T ss_pred             EEEeCC-CCCccccCCC-CCCcCCCEEECCC-CcCCccChhhhhhccc--cCEEEecCC
Confidence            455555 4566  6664 3667899999987 568888754 444566  999999874

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=87.15  E-value=0.74  Score=37.47  Aligned_cols=110  Identities=15%  Similarity=0.157  Sum_probs=70.6

Q ss_pred             HhhhhhccCCccEEEeccCCCCCC-----cccccCCCCCccEEEecCCCCceecCCCCcC------CCceEEEeccCCCC
Q 043667          256 QQQLCELSCRLEYLRLRYCKGLVK-----LPQSSLSLSSLREIDIYDCSSLVSFPEVALP------SKLKKIEIRKCDAL  324 (387)
Q Consensus       256 ~~~l~~~~~~L~~L~l~~c~~l~~-----~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~------~~L~~L~l~~c~~l  324 (387)
                      +..+...-+.|++|++.++..+.+     +...+..-..|+.|++++| .+.+.....+.      ..|++|+++++ .+
T Consensus        33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N-~I  110 (197)
T 1pgv_A           33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN-FL  110 (197)
T ss_dssp             HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS-BC
T ss_pred             HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCC-cC
Confidence            333333348999999987545543     3445667789999999984 66654433322      78999999874 46


Q ss_pred             Cc-----cccccccCCCCCcceEecccCc--ccccc-----cCC-CCCCCccEEeecC
Q 043667          325 KS-----LPEAWMCDTNSSLETLKIERCR--SLTYI-----AGV-QLPPSLKRLDIWN  369 (387)
Q Consensus       325 ~~-----l~~~~~~~~~~~L~~L~l~~c~--~l~~~-----~~~-~~~~~L~~L~l~~  369 (387)
                      .+     +.+.+..-+.  |++|+++++.  .+.+-     ... ..-++|++|+++.
T Consensus       111 g~~Ga~ala~aL~~N~t--L~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~  166 (197)
T 1pgv_A          111 TPELLARLLRSTLVTQS--IVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  166 (197)
T ss_dssp             CHHHHHHHHHHTTTTCC--CSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             CHHHHHHHHHHHhhCCc--eeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence            53     4455544555  9999998753  33321     111 2236789998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	387
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.003

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 32/241 (13%), Positives = 66/241 (27%), Gaps = 15/241 (6%)

Query: 113 PKLRELHILRCSKLQGTFPE---HLPALEMLVIEACKELSVSVSSLPALCKLKIGGCKKV 169
            +++ + +        T          L+ L +E  +     V++L     L        
Sbjct: 46  FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 105

Query: 170 VWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQD 229
              S        +S    D  N  +     +  +      +  T  Q  +      L + 
Sbjct: 106 SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS 165

Query: 230 ICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLS-LS 288
             S           L    +   K+   Q       L++L L  C  ++      L  + 
Sbjct: 166 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP 225

Query: 289 SLREIDIYDCSSLVSFPEVALPSKLKKIEI---------RKCDALKSLPEAWMCDTNSSL 339
           +L+ + ++      +     L   L  ++I         R     K   E W      +L
Sbjct: 226 TLKTLQVFGIVPDGTLQ--LLKEALPHLQINCSHFTTIARPTIGNKKNQEIWGIKCRLTL 283

Query: 340 E 340
           +
Sbjct: 284 Q 284

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	387
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.8
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.76
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.71
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.67
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.6
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.6
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.59
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.59
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.47
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.45
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.42
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.42
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.42
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.42
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.41
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.36
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.35
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.34
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.33
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.32
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.24
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.22
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.1
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.96
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.86
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.82
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.75
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.61
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.53
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.46
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.45
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.33
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.32
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.25
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.2
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.04
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.62
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.68
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.46
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.19
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	94.59
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.58

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=2.2e-17  Score=151.38  Aligned_cols=78  Identities=9%  Similarity=0.086  Sum_probs=61.6

Q ss_pred             CCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCC
Q 043667            6 KNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPR   85 (387)
Q Consensus         6 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~   85 (387)
                      .+|++|.++++.+..+. .++.  +++|++|++++| .+++++.++++++|++|+++++ .++.++.       ...+++
T Consensus        44 ~~l~~L~l~~~~I~~l~-gl~~--L~nL~~L~Ls~N-~l~~l~~l~~L~~L~~L~L~~n-~i~~i~~-------l~~l~~  111 (384)
T d2omza2          44 DQVTTLQADRLGIKSID-GVEY--LNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNN-QIADITP-------LANLTN  111 (384)
T ss_dssp             TTCCEEECCSSCCCCCT-TGGG--CTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCGG-------GTTCTT
T ss_pred             CCCCEEECCCCCCCCcc-cccc--CCCCCEEeCcCC-cCCCCccccCCccccccccccc-ccccccc-------cccccc
Confidence            57899999988887764 3444  899999999996 7888888999999999999998 5555432       346888


Q ss_pred             cceeeccccC
Q 043667           86 LETLRFDAML   95 (387)
Q Consensus        86 L~~L~l~~~~   95 (387)
                      |+.|++.+..
T Consensus       112 L~~L~~~~~~  121 (384)
T d2omza2         112 LTGLTLFNNQ  121 (384)
T ss_dssp             CCEEECCSSC
T ss_pred             cccccccccc
Confidence            9999887643

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=1.3e-16  Score=146.10  Aligned_cols=320  Identities=14%  Similarity=0.144  Sum_probs=179.0

Q ss_pred             CCCCCCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCccc
Q 043667            2 LEPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAI   81 (387)
Q Consensus         2 ~~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~   81 (387)
                      ++.+++|++|+++++.+..+|. ++.  +++|++|++++| .+..+++++.+++|+.|++.++ .+..+...       .
T Consensus        62 l~~L~nL~~L~Ls~N~l~~l~~-l~~--L~~L~~L~L~~n-~i~~i~~l~~l~~L~~L~~~~~-~~~~~~~~-------~  129 (384)
T d2omza2          62 VEYLNNLTQINFSNNQLTDITP-LKN--LTKLVDILMNNN-QIADITPLANLTNLTGLTLFNN-QITDIDPL-------K  129 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GTT--CTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCGGG-------T
T ss_pred             cccCCCCCEEeCcCCcCCCCcc-ccC--Cccccccccccc-cccccccccccccccccccccc-cccccccc-------c
Confidence            4567899999999999988875 555  999999999997 6788888999999999999887 44444322       1


Q ss_pred             CCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCCCCCccEEEeccCc-cccccccCCCCcce
Q 043667           82 PFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACK-ELSVSVSSLPALCK  160 (387)
Q Consensus        82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~~~L~~  160 (387)
                      ....+......... +.....    ................. ... .+ ...+........... ........+++++.
T Consensus       130 ~~~~~~~~~~~~~~-l~~~~~----~~~~~~~~~~~~~~~~~-~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  201 (384)
T d2omza2         130 NLTNLNRLELSSNT-ISDISA----LSGLTSLQQLSFGNQVT-DLK-PL-ANLTTLERLDISSNKVSDISVLAKLTNLES  201 (384)
T ss_dssp             TCTTCSEEEEEEEE-ECCCGG----GTTCTTCSEEEEEESCC-CCG-GG-TTCTTCCEEECCSSCCCCCGGGGGCTTCSE
T ss_pred             cccccccccccccc-cccccc----ccccccccccccccccc-hhh-hh-ccccccccccccccccccccccccccccce
Confidence            22333333332210 000000    00000111111111100 000 00 011122222222111 11234455666777


Q ss_pred             EEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecC
Q 043667          161 LKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDW  240 (387)
Q Consensus       161 L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  240 (387)
                      +.++++....+. ....+++|++|+++++. +..++.  ...+++|+.  +.+.++. +..++.  ++.+++|++|++++
T Consensus       202 l~l~~n~i~~~~-~~~~~~~L~~L~l~~n~-l~~~~~--l~~l~~L~~--L~l~~n~-l~~~~~--~~~~~~L~~L~l~~  272 (384)
T d2omza2         202 LIATNNQISDIT-PLGILTNLDELSLNGNQ-LKDIGT--LASLTNLTD--LDLANNQ-ISNLAP--LSGLTKLTELKLGA  272 (384)
T ss_dssp             EECCSSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSE--EECCSSC-CCCCGG--GTTCTTCSEEECCS
T ss_pred             eeccCCccCCCC-cccccCCCCEEECCCCC-CCCcch--hhcccccch--hccccCc-cCCCCc--ccccccCCEeeccC
Confidence            776665433322 23445677777777653 222221  234555555  6666654 333332  45677788888876


Q ss_pred             CCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcCCCceEEEecc
Q 043667          241 CPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRK  320 (387)
Q Consensus       241 ~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~  320 (387)
                      + .+..+++      +..+    +.++.+.+.++ .++.++ .+..+++++.|+++++ +++.++.....++|++|++++
T Consensus       273 ~-~l~~~~~------~~~~----~~l~~l~~~~n-~l~~~~-~~~~~~~l~~L~ls~n-~l~~l~~l~~l~~L~~L~L~~  338 (384)
T d2omza2         273 N-QISNISP------LAGL----TALTNLELNEN-QLEDIS-PISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFAN  338 (384)
T ss_dssp             S-CCCCCGG------GTTC----TTCSEEECCSS-CCSCCG-GGGGCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCS
T ss_pred             c-ccCCCCc------cccc----ccccccccccc-cccccc-ccchhcccCeEECCCC-CCCCCcccccCCCCCEEECCC
Confidence            4 3333322      2333    67777777664 345444 3556777888888774 666655433347888888887


Q ss_pred             CCCCCccccccccCCCCCcceEecccCcccccccCCCCCCCccEEeecC
Q 043667          321 CDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGVQLPPSLKRLDIWN  369 (387)
Q Consensus       321 c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~  369 (387)
                      | .+++++ .+..+++  |++|+++++ ++++++.-..+++|++|++++
T Consensus       339 n-~l~~l~-~l~~l~~--L~~L~l~~N-~l~~l~~l~~l~~L~~L~L~~  382 (384)
T d2omza2         339 N-KVSDVS-SLANLTN--INWLSAGHN-QISDLTPLANLTRITQLGLND  382 (384)
T ss_dssp             S-CCCCCG-GGGGCTT--CCEEECCSS-CCCBCGGGTTCTTCSEEECCC
T ss_pred             C-CCCCCh-hHcCCCC--CCEEECCCC-cCCCChhhccCCCCCEeeCCC
Confidence            6 467665 3555666  888888775 677766545567788887765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.71  E-value=7.7e-15  Score=132.30  Aligned_cols=311  Identities=20%  Similarity=0.184  Sum_probs=179.3

Q ss_pred             CCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCC
Q 043667            6 KNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPR   85 (387)
Q Consensus         6 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~   85 (387)
                      .++++|++++++..++|++     .++|++|+++++ .++.+|.  .+.+|+.|++.++ .++.++.         -.+.
T Consensus        38 ~~l~~LdLs~~~L~~lp~~-----~~~L~~L~Ls~N-~l~~lp~--~~~~L~~L~l~~n-~l~~l~~---------lp~~   99 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL-----PPHLESLVASCN-SLTELPE--LPQSLKSLLVDNN-NLKALSD---------LPPL   99 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC-----CTTCSEEECCSS-CCSSCCC--CCTTCCEEECCSS-CCSCCCS---------CCTT
T ss_pred             cCCCEEEeCCCCCCCCCCC-----CCCCCEEECCCC-CCccccc--chhhhhhhhhhhc-ccchhhh---------hccc
Confidence            3688999999998888864     567999999874 8888886  3578999999887 5555432         1356


Q ss_pred             cceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCCCCCccEEEeccCcccc-ccccCCCCcceEEEc
Q 043667           86 LETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELS-VSVSSLPALCKLKIG  164 (387)
Q Consensus        86 L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~L~~L~i~  164 (387)
                      |++|+++++. +...      ..++.+++|+.++++++.. . ..+...+.+..+.+..+.... ..+..++.++.+.+.
T Consensus       100 L~~L~L~~n~-l~~l------p~~~~l~~L~~L~l~~~~~-~-~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~  170 (353)
T d1jl5a_         100 LEYLGVSNNQ-LEKL------PELQNSSFLKIIDVDNNSL-K-KLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYAD  170 (353)
T ss_dssp             CCEEECCSSC-CSSC------CCCTTCTTCCEEECCSSCC-S-CCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECC
T ss_pred             cccccccccc-cccc------cchhhhccceeeccccccc-c-ccccccccccchhhccccccccccccccccceecccc
Confidence            9999988653 4333      2233578899999887633 3 455556777777776655333 345667777777777


Q ss_pred             CccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCc
Q 043667          165 GCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKL  244 (387)
Q Consensus       165 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l  244 (387)
                      ++....+...   ....+.+...+ .....++.  ...++.|+.  +.+..+.. ..++.    ...++..+.+.++.. 
T Consensus       171 ~n~~~~~~~~---~~~~~~l~~~~-~~~~~~~~--~~~l~~L~~--l~l~~n~~-~~~~~----~~~~l~~~~~~~~~~-  236 (353)
T d1jl5a_         171 NNSLKKLPDL---PLSLESIVAGN-NILEELPE--LQNLPFLTT--IYADNNLL-KTLPD----LPPSLEALNVRDNYL-  236 (353)
T ss_dssp             SSCCSSCCCC---CTTCCEEECCS-SCCSSCCC--CTTCTTCCE--EECCSSCC-SSCCS----CCTTCCEEECCSSCC-
T ss_pred             cccccccccc---ccccccccccc-cccccccc--ccccccccc--cccccccc-ccccc----ccccccccccccccc-
Confidence            6543332211   12223333322 11122211  234455555  55554322 12221    234555555554322 


Q ss_pred             ccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCC
Q 043667          245 QSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDAL  324 (387)
Q Consensus       245 ~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l  324 (387)
                      ...+.            ..+.+...++.... ...+..   -.......++.. ..+..++  ..+++|++|++++| .+
T Consensus       237 ~~~~~------------~~~~l~~~~~~~~~-~~~l~~---l~~~~~~~~~~~-~~~~~~~--~~~~~L~~L~Ls~N-~l  296 (353)
T d1jl5a_         237 TDLPE------------LPQSLTFLDVSENI-FSGLSE---LPPNLYYLNASS-NEIRSLC--DLPPSLEELNVSNN-KL  296 (353)
T ss_dssp             SCCCC------------CCTTCCEEECCSSC-CSEESC---CCTTCCEEECCS-SCCSEEC--CCCTTCCEEECCSS-CC
T ss_pred             ccccc------------cccccccccccccc-cccccc---ccchhccccccc-Ccccccc--ccCCCCCEEECCCC-cc
Confidence            21111            01344444443211 111111   012233444443 3444444  23478999999886 47


Q ss_pred             CccccccccCCCCCcceEecccCcccccccCCCCCCCccEEeecCCcccccccccc-ccccCC
Q 043667          325 KSLPEAWMCDTNSSLETLKIERCRSLTYIAGVQLPPSLKRLDIWNCDNIRTLTVEE-GVQSSS  386 (387)
Q Consensus       325 ~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~-~~~~~~  386 (387)
                      +++|..   .++  |++|++++| ++++++  ..+++|++|++++|+ ++++|... +++.|+
T Consensus       297 ~~lp~~---~~~--L~~L~L~~N-~L~~l~--~~~~~L~~L~L~~N~-L~~lp~~~~~L~~L~  350 (353)
T d1jl5a_         297 IELPAL---PPR--LERLIASFN-HLAEVP--ELPQNLKQLHVEYNP-LREFPDIPESVEDLR  350 (353)
T ss_dssp             SCCCCC---CTT--CCEEECCSS-CCSCCC--CCCTTCCEEECCSSC-CSSCCCCCTTCCEEE
T ss_pred             Cccccc---cCC--CCEEECCCC-cCCccc--cccCCCCEEECcCCc-CCCCCccccccCeeE
Confidence            888765   455  889999885 788877  456788999998875 88888433 455543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.67  E-value=1.2e-14  Score=128.61  Aligned_cols=260  Identities=13%  Similarity=0.140  Sum_probs=142.7

Q ss_pred             CCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccCCC
Q 043667            7 NLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFP   84 (387)
Q Consensus         7 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~   84 (387)
                      ..+.++=++.+..++|..+    .+++++|+++++ .++.+|.  +..+++|++|++.++ .+..++...     +..++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l----~~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~l~~n-~~~~i~~~~-----f~~l~   79 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDL----PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINN-KISKISPGA-----FAPLV   79 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSC----CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTT-----TTTCT
T ss_pred             cCCEEEecCCCCCccCCCC----CCCCCEEECcCC-cCCCcChhHhhccccccccccccc-cccccchhh-----hhCCC
Confidence            3455555566677778765    357888888885 7778874  778888888888888 444554332     23466


Q ss_pred             CcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCCCCCccEEEeccCccccccccCCCCcceEEEc
Q 043667           85 RLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIG  164 (387)
Q Consensus        85 ~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~i~  164 (387)
                      +|++|++.++. ++....    .   ..+.++.|....+ .+. .++.                 ..+.....+..+.+.
T Consensus        80 ~L~~L~l~~n~-l~~l~~----~---~~~~l~~L~~~~n-~l~-~l~~-----------------~~~~~~~~~~~l~~~  132 (305)
T d1xkua_          80 KLERLYLSKNQ-LKELPE----K---MPKTLQELRVHEN-EIT-KVRK-----------------SVFNGLNQMIVVELG  132 (305)
T ss_dssp             TCCEEECCSSC-CSBCCS----S---CCTTCCEEECCSS-CCC-BBCH-----------------HHHTTCTTCCEEECC
T ss_pred             ccCEecccCCc-cCcCcc----c---hhhhhhhhhcccc-chh-hhhh-----------------hhhhccccccccccc
Confidence            66666666532 222211    0   1345555555443 111 1110                 112222333333333


Q ss_pred             Ccccee---EecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCC
Q 043667          165 GCKKVV---WRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWC  241 (387)
Q Consensus       165 ~~~~~~---~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  241 (387)
                      .+....   ....+..+++|+.+.+.++. +..++..   .+++|++  +++.++..... +...+..++.++.|+++++
T Consensus       133 ~n~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~l~~~---~~~~L~~--L~l~~n~~~~~-~~~~~~~~~~l~~L~~s~n  205 (305)
T d1xkua_         133 TNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQG---LPPSLTE--LHLDGNKITKV-DAASLKGLNNLAKLGLSFN  205 (305)
T ss_dssp             SSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSS---CCTTCSE--EECTTSCCCEE-CTGGGTTCTTCCEEECCSS
T ss_pred             cccccccCCCccccccccccCccccccCC-ccccCcc---cCCccCE--EECCCCcCCCC-ChhHhhccccccccccccc
Confidence            321111   11223334555555555432 2222211   2344444  66655443322 2233566778888888774


Q ss_pred             CCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcC--------CCc
Q 043667          242 PKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALP--------SKL  313 (387)
Q Consensus       242 ~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~--------~~L  313 (387)
                       .+..++..    ++..+    ++|++|++++| +++.+|.++..+++|+.|++++ +.++.++...+.        ++|
T Consensus       206 -~l~~~~~~----~~~~l----~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~-N~i~~i~~~~f~~~~~~~~~~~L  274 (305)
T d1xkua_         206 -SISAVDNG----SLANT----PHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASY  274 (305)
T ss_dssp             -CCCEECTT----TGGGS----TTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCC
T ss_pred             -cccccccc----ccccc----ccceeeecccc-cccccccccccccCCCEEECCC-CccCccChhhccCcchhcccCCC
Confidence             55555443    34444    78888888876 5777877777888888888887 467777654332        556


Q ss_pred             eEEEeccCC
Q 043667          314 KKIEIRKCD  322 (387)
Q Consensus       314 ~~L~l~~c~  322 (387)
                      +.|++.+++
T Consensus       275 ~~L~L~~N~  283 (305)
T d1xkua_         275 SGVSLFSNP  283 (305)
T ss_dssp             SEEECCSSS
T ss_pred             CEEECCCCc
Confidence            666666644

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.60  E-value=4.3e-13  Score=120.59  Aligned_cols=296  Identities=19%  Similarity=0.143  Sum_probs=171.0

Q ss_pred             CCCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCC
Q 043667            5 HKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFP   84 (387)
Q Consensus         5 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~   84 (387)
                      +++|++|+++++.+..+|+.     +.+|+.|++.++ .++.++.+.  +.|++|+++++ .++.++.       ...++
T Consensus        57 ~~~L~~L~Ls~N~l~~lp~~-----~~~L~~L~l~~n-~l~~l~~lp--~~L~~L~L~~n-~l~~lp~-------~~~l~  120 (353)
T d1jl5a_          57 PPHLESLVASCNSLTELPEL-----PQSLKSLLVDNN-NLKALSDLP--PLLEYLGVSNN-QLEKLPE-------LQNSS  120 (353)
T ss_dssp             CTTCSEEECCSSCCSSCCCC-----CTTCCEEECCSS-CCSCCCSCC--TTCCEEECCSS-CCSSCCC-------CTTCT
T ss_pred             CCCCCEEECCCCCCcccccc-----hhhhhhhhhhhc-ccchhhhhc--ccccccccccc-ccccccc-------hhhhc
Confidence            47999999999999999975     457999999985 666665432  46999999988 6666653       24578


Q ss_pred             CcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCCCCCccEEEeccCccccccccCCCCcceEEEc
Q 043667           85 RLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIG  164 (387)
Q Consensus        85 ~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~i~  164 (387)
                      +|++|++.++.......         ....+..+.+.............++.++.+.+.++.... ........+.+...
T Consensus       121 ~L~~L~l~~~~~~~~~~---------~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~-~~~~~~~~~~l~~~  190 (353)
T d1jl5a_         121 FLKIIDVDNNSLKKLPD---------LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK-LPDLPLSLESIVAG  190 (353)
T ss_dssp             TCCEEECCSSCCSCCCC---------CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCCCCTTCCEEECC
T ss_pred             cceeecccccccccccc---------ccccccchhhccccccccccccccccceecccccccccc-cccccccccccccc
Confidence            99999998754321111         245666676655433322223446777888777654321 11111223333333


Q ss_pred             CccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCc
Q 043667          165 GCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKL  244 (387)
Q Consensus       165 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l  244 (387)
                      +. ..........++.|+.+.++++... .++    .....+..  +.+..... ...+    ....+++...+.... .
T Consensus       191 ~~-~~~~~~~~~~l~~L~~l~l~~n~~~-~~~----~~~~~l~~--~~~~~~~~-~~~~----~~~~~l~~~~~~~~~-~  256 (353)
T d1jl5a_         191 NN-ILEELPELQNLPFLTTIYADNNLLK-TLP----DLPPSLEA--LNVRDNYL-TDLP----ELPQSLTFLDVSENI-F  256 (353)
T ss_dssp             SS-CCSSCCCCTTCTTCCEEECCSSCCS-SCC----SCCTTCCE--EECCSSCC-SCCC----CCCTTCCEEECCSSC-C
T ss_pred             cc-ccccccccccccccccccccccccc-ccc----cccccccc--cccccccc-cccc----ccccccccccccccc-c
Confidence            22 2222233455778888888765322 221    22333333  44443322 1111    123455555554321 1


Q ss_pred             ccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCC
Q 043667          245 QSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDAL  324 (387)
Q Consensus       245 ~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l  324 (387)
                      ..+..            ........++..+ .+..++   ..+++|++|++++| .++.++.  ..++|+.|++++| .+
T Consensus       257 ~~l~~------------l~~~~~~~~~~~~-~~~~~~---~~~~~L~~L~Ls~N-~l~~lp~--~~~~L~~L~L~~N-~L  316 (353)
T d1jl5a_         257 SGLSE------------LPPNLYYLNASSN-EIRSLC---DLPPSLEELNVSNN-KLIELPA--LPPRLERLIASFN-HL  316 (353)
T ss_dssp             SEESC------------CCTTCCEEECCSS-CCSEEC---CCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS-CC
T ss_pred             ccccc------------ccchhcccccccC-cccccc---ccCCCCCEEECCCC-ccCcccc--ccCCCCEEECCCC-cC
Confidence            11110            0133344444432 233333   34678888888874 6777763  3478888888765 47


Q ss_pred             CccccccccCCCCCcceEecccCcccccccCCCCCCCccEEeec
Q 043667          325 KSLPEAWMCDTNSSLETLKIERCRSLTYIAGVQLPPSLKRLDIW  368 (387)
Q Consensus       325 ~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~  368 (387)
                      +++|..   ..+  |++|++++| .++.+|  ..+.+|+.|.+.
T Consensus       317 ~~l~~~---~~~--L~~L~L~~N-~L~~lp--~~~~~L~~L~~~  352 (353)
T d1jl5a_         317 AEVPEL---PQN--LKQLHVEYN-PLREFP--DIPESVEDLRMN  352 (353)
T ss_dssp             SCCCCC---CTT--CCEEECCSS-CCSSCC--CCCTTCCEEECC
T ss_pred             Cccccc---cCC--CCEEECcCC-cCCCCC--ccccccCeeECc
Confidence            888765   455  888888886 488887  346677777764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.60  E-value=3.6e-14  Score=125.60  Aligned_cols=239  Identities=15%  Similarity=0.145  Sum_probs=141.8

Q ss_pred             CCCCcEEEEcCcCCCCCCC-ccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCccc
Q 043667            5 HKNLEQFCISGYRGAKFPT-WFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAI   81 (387)
Q Consensus         5 ~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~   81 (387)
                      ++++++|+++++.+.++|. ++..  +++|++|++++| .+..+++  ++.+++|++|++.++ .++.++...       
T Consensus        30 ~~~l~~L~Ls~N~i~~l~~~~f~~--l~~L~~L~l~~n-~~~~i~~~~f~~l~~L~~L~l~~n-~l~~l~~~~-------   98 (305)
T d1xkua_          30 PPDTALLDLQNNKITEIKDGDFKN--LKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKN-QLKELPEKM-------   98 (305)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTT--CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSC-------
T ss_pred             CCCCCEEECcCCcCCCcChhHhhc--cccccccccccc-cccccchhhhhCCCccCEecccCC-ccCcCccch-------
Confidence            4789999999999999976 5666  999999999997 4555543  889999999999999 677777543       


Q ss_pred             CCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccc-cccC---CCCCCccEEEeccCccccccccCCCC
Q 043667           82 PFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQ-GTFP---EHLPALEMLVIEACKELSVSVSSLPA  157 (387)
Q Consensus        82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~-~~~~---~~~~~L~~L~l~~~~~l~~~~~~~~~  157 (387)
                       ++.++.|...+.. +.....    ........+..+....+.... ...+   ..+++|+.+.+.++..........++
T Consensus        99 -~~~l~~L~~~~n~-l~~l~~----~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~  172 (305)
T d1xkua_          99 -PKTLQELRVHENE-ITKVRK----SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS  172 (305)
T ss_dssp             -CTTCCEEECCSSC-CCBBCH----HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTT
T ss_pred             -hhhhhhhhccccc-hhhhhh----hhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcccCCc
Confidence             5677888777532 222111    111124455555555432221 1111   12344555555444322111222344


Q ss_pred             cceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEE
Q 043667          158 LCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLT  237 (387)
Q Consensus       158 L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~  237 (387)
                      |++|++.++....                       ..+.. ...++.+++  +.++++ .++.++...+..+++|++|+
T Consensus       173 L~~L~l~~n~~~~-----------------------~~~~~-~~~~~~l~~--L~~s~n-~l~~~~~~~~~~l~~L~~L~  225 (305)
T d1xkua_         173 LTELHLDGNKITK-----------------------VDAAS-LKGLNNLAK--LGLSFN-SISAVDNGSLANTPHLRELH  225 (305)
T ss_dssp             CSEEECTTSCCCE-----------------------ECTGG-GTTCTTCCE--EECCSS-CCCEECTTTGGGSTTCCEEE
T ss_pred             cCEEECCCCcCCC-----------------------CChhH-hhccccccc--cccccc-cccccccccccccccceeee
Confidence            4444444433222                       11111 233444444  555443 34444445566778888888


Q ss_pred             ecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccc-------cCCCCCccEEEecCC
Q 043667          238 IDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQS-------SLSLSSLREIDIYDC  298 (387)
Q Consensus       238 l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~-------~~~~~~L~~L~l~~c  298 (387)
                      ++++ .+..++.     ++..+    ++|+.|+++++ +++.++..       ....++|+.|+++++
T Consensus       226 L~~N-~L~~lp~-----~l~~l----~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N  282 (305)
T d1xkua_         226 LNNN-KLVKVPG-----GLADH----KYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSN  282 (305)
T ss_dssp             CCSS-CCSSCCT-----TTTTC----SSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred             cccc-ccccccc-----ccccc----cCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCC
Confidence            8885 5666654     35555    88888888875 46666432       235677888888874

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.59  E-value=4.7e-15  Score=131.92  Aligned_cols=87  Identities=16%  Similarity=0.122  Sum_probs=52.2

Q ss_pred             cccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCC-CcccccCCCCCccEEEecCCCCce-ec
Q 043667          227 LQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLV-KLPQSSLSLSSLREIDIYDCSSLV-SF  304 (387)
Q Consensus       227 l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~~L~~L~l~~c~~l~-~~  304 (387)
                      .+.+++++.+++.++.....++      .+..+    ++|+.|+++++. ++ .+|..+..+++|+.|++++ ++++ .+
T Consensus       217 ~~~~~~l~~l~~~~~~l~~~~~------~~~~~----~~L~~L~Ls~N~-l~g~iP~~l~~L~~L~~L~Ls~-N~l~g~i  284 (313)
T d1ogqa_         217 FGSDKNTQKIHLAKNSLAFDLG------KVGLS----KNLNGLDLRNNR-IYGTLPQGLTQLKFLHSLNVSF-NNLCGEI  284 (313)
T ss_dssp             CCTTSCCSEEECCSSEECCBGG------GCCCC----TTCCEEECCSSC-CEECCCGGGGGCTTCCEEECCS-SEEEEEC
T ss_pred             cccccccccccccccccccccc------ccccc----cccccccCccCe-ecccCChHHhCCCCCCEEECcC-CcccccC
Confidence            4456677777777653322222      12222    677777777754 44 6777777777777777777 4555 56


Q ss_pred             CCCCcCCCceEEEeccCCCCC
Q 043667          305 PEVALPSKLKKIEIRKCDALK  325 (387)
Q Consensus       305 ~~~~~~~~L~~L~l~~c~~l~  325 (387)
                      |..+..++|+.+++.+++.+.
T Consensus       285 P~~~~L~~L~~l~l~~N~~l~  305 (313)
T d1ogqa_         285 PQGGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             CCSTTGGGSCGGGTCSSSEEE
T ss_pred             CCcccCCCCCHHHhCCCcccc
Confidence            654333566666666655443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.59  E-value=5e-15  Score=131.71  Aligned_cols=233  Identities=15%  Similarity=0.095  Sum_probs=136.0

Q ss_pred             CCCCcceEeeccCcccccccCCCCCCccEEEeccCccccccccCCCCcceEEEcCccceeE-ecccccCCCCcEEeccCC
Q 043667          111 GFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVW-RSATDHLGSQNSVVCRDT  189 (387)
Q Consensus       111 ~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~i~~~~~~~~-~~~~~~~~~L~~L~l~~~  189 (387)
                      .+++|++|+++++..+.+.+|.                  .++++++|++|+++++..... +..+..+++|+.+++.++
T Consensus        74 ~L~~L~~L~Ls~~N~l~g~iP~------------------~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N  135 (313)
T d1ogqa_          74 NLPYLNFLYIGGINNLVGPIPP------------------AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN  135 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCG------------------GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS
T ss_pred             cCcccccccccccccccccccc------------------ccccccccchhhhccccccccccccccchhhhcccccccc
Confidence            4555555555544444444443                  334444444444444433321 122333444555555443


Q ss_pred             CCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCc-cEEEecCCCCcccchhhHHHHHHhhhhhccCCccE
Q 043667          190 SNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSL-KKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEY  268 (387)
Q Consensus       190 ~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L-~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~  268 (387)
                      .....++.. ...++.++.  +.+.++.....+|.. +..+.++ +.+.++++ .+....+.    .+..     .....
T Consensus       136 ~~~~~~p~~-l~~l~~L~~--l~l~~n~l~~~ip~~-~~~l~~l~~~l~~~~n-~l~~~~~~----~~~~-----l~~~~  201 (313)
T d1ogqa_         136 ALSGTLPPS-ISSLPNLVG--ITFDGNRISGAIPDS-YGSFSKLFTSMTISRN-RLTGKIPP----TFAN-----LNLAF  201 (313)
T ss_dssp             EEESCCCGG-GGGCTTCCE--EECCSSCCEEECCGG-GGCCCTTCCEEECCSS-EEEEECCG----GGGG-----CCCSE
T ss_pred             cccccCchh-hccCcccce--eeccccccccccccc-cccccccccccccccc-cccccccc----cccc-----ccccc
Confidence            322222211 233444444  555554444345544 3445554 67777664 44333222    2322     34456


Q ss_pred             EEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCCCccccccccCCCCCcceEecccCc
Q 043667          269 LRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCR  348 (387)
Q Consensus       269 L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~  348 (387)
                      +++.++.....++..+..+++++.+++.++.-...++.....++|+.|+++++.--..+|..+..+++  |++|+++++ 
T Consensus       202 l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~--L~~L~Ls~N-  278 (313)
T d1ogqa_         202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF--LHSLNVSFN-  278 (313)
T ss_dssp             EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTT--CCEEECCSS-
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCC--CCEEECcCC-
Confidence            77777665556777778889999999988644334454444589999999986533478988888888  999999995 


Q ss_pred             ccc-cccCCCCCCCccEEeecCCcccccccc
Q 043667          349 SLT-YIAGVQLPPSLKRLDIWNCDNIRTLTV  378 (387)
Q Consensus       349 ~l~-~~~~~~~~~~L~~L~l~~C~~l~~l~~  378 (387)
                      +++ .+|..+.+++|+.+++++.+.+.-.|.
T Consensus       279 ~l~g~iP~~~~L~~L~~l~l~~N~~l~g~pl  309 (313)
T d1ogqa_         279 NLCGEIPQGGNLQRFDVSAYANNKCLCGSPL  309 (313)
T ss_dssp             EEEEECCCSTTGGGSCGGGTCSSSEEESTTS
T ss_pred             cccccCCCcccCCCCCHHHhCCCccccCCCC
Confidence            676 677656678899999998777766553

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.1e-14  Score=127.40  Aligned_cols=209  Identities=15%  Similarity=0.130  Sum_probs=135.7

Q ss_pred             cCCCCcceEEEcCcccee--EecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccc-ccccc
Q 043667          153 SSLPALCKLKIGGCKKVV--WRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHD-GLLQD  229 (387)
Q Consensus       153 ~~~~~L~~L~i~~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~-~~l~~  229 (387)
                      ....+|++|+++++....  ....+..+++|++|.+.+|.--...... ...+++|++  +.+++|..++.... .+...
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~--L~Ls~c~~itd~~l~~l~~~  119 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVR--LNLSGCSGFSEFALQTLLSS  119 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSE--EECTTCBSCCHHHHHHHHHH
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHH-HhcCCCCcC--ccccccccccccccchhhHH
Confidence            345689999999874322  3345677899999999998532211111 345778888  99999988764322 12456


Q ss_pred             CCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCC-CCCC--cccccCCCCCccEEEecCCCCceecCC
Q 043667          230 ICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCK-GLVK--LPQSSLSLSSLREIDIYDCSSLVSFPE  306 (387)
Q Consensus       230 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~-~l~~--~~~~~~~~~~L~~L~l~~c~~l~~~~~  306 (387)
                      +++|++|++++|..+.+.....   .+..   .+++|++|++.+|. .+++  +......+++|++|++++|..+++-..
T Consensus       120 ~~~L~~L~ls~c~~~~~~~~~~---~~~~---~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~  193 (284)
T d2astb2         120 CSRLDELNLSWCFDFTEKHVQV---AVAH---VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF  193 (284)
T ss_dssp             CTTCCEEECCCCTTCCHHHHHH---HHHH---SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG
T ss_pred             HHhccccccccccccccccchh---hhcc---cccccchhhhcccccccccccccccccccccccccccccccCCCchhh
Confidence            8999999999998776432111   1222   34789999999874 3442  333345789999999999988875432


Q ss_pred             CCc--CCCceEEEeccCCCCCccc-cccccCCCCCcceEecccCcccccccCC-CCCCCccEEeecCCcccccc
Q 043667          307 VAL--PSKLKKIEIRKCDALKSLP-EAWMCDTNSSLETLKIERCRSLTYIAGV-QLPPSLKRLDIWNCDNIRTL  376 (387)
Q Consensus       307 ~~~--~~~L~~L~l~~c~~l~~l~-~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~C~~l~~l  376 (387)
                      ..+  .++|++|++++|..+++-. ..+..+++  |++|++++|-.-..+..- ..+|+|+   + +|++++.+
T Consensus       194 ~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~--L~~L~l~~~~~d~~l~~l~~~lp~L~---i-~~~~ls~~  261 (284)
T d2astb2         194 QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT--LKTLQVFGIVPDGTLQLLKEALPHLQ---I-NCSHFTTI  261 (284)
T ss_dssp             GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT--CCEEECTTSSCTTCHHHHHHHSTTSE---E-SCCCSCCT
T ss_pred             hhhcccCcCCEEECCCCCCCChHHHHHHhcCCC--CCEEeeeCCCCHHHHHHHHHhCcccc---c-cCccCCCC
Confidence            222  3899999999998886532 33444555  999999998221112111 2244544   4 56777766

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.9e-14  Score=124.73  Aligned_cols=203  Identities=15%  Similarity=0.134  Sum_probs=115.4

Q ss_pred             CCCcceEeeccCccccc---ccCCCCCCccEEEeccCccc---cccccCCCCcceEEEcCcccee---EecccccCCCCc
Q 043667          112 FPKLRELHILRCSKLQG---TFPEHLPALEMLVIEACKEL---SVSVSSLPALCKLKIGGCKKVV---WRSATDHLGSQN  182 (387)
Q Consensus       112 ~~~L~~L~l~~~~~l~~---~~~~~~~~L~~L~l~~~~~l---~~~~~~~~~L~~L~i~~~~~~~---~~~~~~~~~~L~  182 (387)
                      ..+|++|+++++..-..   .+...+++|++|++++|..-   ...++.+++|++|++++|..++   .......+++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            45777777776632111   22344667777777766421   1334556666666666655444   111223345555


Q ss_pred             EEeccCCCCcccccCCCCCCCccccceeEEEcCCCCccc--ccccccccCCCccEEEecCCC-CcccchhhHHHHHHhhh
Q 043667          183 SVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWK--SHDGLLQDICSLKKLTIDWCP-KLQSLVAEEEKDQQQQL  259 (387)
Q Consensus       183 ~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~--~~~~~l~~~~~L~~L~l~~~~-~l~~~~~~~~~~~~~~l  259 (387)
                      +|++++                           |..++.  +.......+++|++|++++|. .+.+.       .+..+
T Consensus       125 ~L~ls~---------------------------c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~-------~l~~l  170 (284)
T d2astb2         125 ELNLSW---------------------------CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS-------DLSTL  170 (284)
T ss_dssp             EEECCC---------------------------CTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH-------HHHHH
T ss_pred             cccccc---------------------------ccccccccchhhhcccccccchhhhcccccccccc-------ccccc
Confidence            555554                           443321  111112235789999998863 23322       12222


Q ss_pred             hhccCCccEEEeccCCCCCC-cccccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCccccccccCCC
Q 043667          260 CELSCRLEYLRLRYCKGLVK-LPQSSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPEAWMCDTN  336 (387)
Q Consensus       260 ~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~~~~~~~~  336 (387)
                      ...+|+|++|++++|..+++ ....+..+++|++|++++|.++++-....+.  ++|+.|++.+|-.-..+....   ..
T Consensus       171 ~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~---~~  247 (284)
T d2astb2         171 VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLK---EA  247 (284)
T ss_dssp             HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHH---HH
T ss_pred             ccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHH---Hh
Confidence            23348999999999888774 3445678899999999999888654332222  899999999884333333221   12


Q ss_pred             CCcceEecccCccccccc
Q 043667          337 SSLETLKIERCRSLTYIA  354 (387)
Q Consensus       337 ~~L~~L~l~~c~~l~~~~  354 (387)
                        +.+|++ +|..++.+.
T Consensus       248 --lp~L~i-~~~~ls~~~  262 (284)
T d2astb2         248 --LPHLQI-NCSHFTTIA  262 (284)
T ss_dssp             --STTSEE-SCCCSCCTT
T ss_pred             --Cccccc-cCccCCCCC
Confidence              444455 456666554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=4.5e-12  Score=107.82  Aligned_cols=225  Identities=14%  Similarity=0.180  Sum_probs=131.6

Q ss_pred             CcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccCCCC
Q 043667            8 LEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPR   85 (387)
Q Consensus         8 L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~   85 (387)
                      -+.++.++.+...+|..+    .+++++|+++++ .++.+|.  +.++++|++|+++++.....++...     +..+++
T Consensus        10 ~~~i~c~~~~l~~iP~~l----~~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~-----f~~l~~   79 (242)
T d1xwdc1          10 NRVFLCQESKVTEIPSDL----PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV-----FSNLPK   79 (242)
T ss_dssp             SSEEEEESCSCSSCCSCS----CSCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSS-----EESCTT
T ss_pred             CCEEEEeCCCCCCcCCCC----CCCCCEEECcCC-cCCccChhHhhccchhhhhhhccccccceeeccc-----cccccc
Confidence            467777777777888654    458999999985 7888875  7889999999999986555555433     245788


Q ss_pred             cceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccC--CCCCCccEEEeccCccccccccCCCCcceEEE
Q 043667           86 LETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFP--EHLPALEMLVIEACKELSVSVSSLPALCKLKI  163 (387)
Q Consensus        86 L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~i  163 (387)
                      ++++.+..+.++.....    ..+..+++|+.++++++ .+. ..+  ..+..++.+......                 
T Consensus        80 l~~l~~~~~n~l~~~~~----~~~~~l~~L~~l~l~~~-~l~-~~~~~~~~~~l~~l~~~~~~-----------------  136 (242)
T d1xwdc1          80 LHEIRIEKANNLLYINP----EAFQNLPNLQYLLISNT-GIK-HLPDVHKIHSLQKVLLDIQD-----------------  136 (242)
T ss_dssp             CCEEEEECCTTCCEECT----TSEECCTTCCEEEEESC-CCC-SCCCCTTTCBSSCEEEEEES-----------------
T ss_pred             ccccccccccccccccc----ccccccccccccccchh-hhc-cccccccccccccccccccc-----------------
Confidence            88888877766666554    44556888888888876 333 222  123334443322211                 


Q ss_pred             cCccceeEe-cccccC-CCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCC
Q 043667          164 GGCKKVVWR-SATDHL-GSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWC  241 (387)
Q Consensus       164 ~~~~~~~~~-~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  241 (387)
                       +.....+. ..+..+ ..++.+++.++ .+..++.. .....++.+  +...++..++.++...+..+++|++|+++++
T Consensus       137 -n~~l~~i~~~~~~~~~~~l~~L~l~~n-~l~~i~~~-~~~~~~l~~--~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N  211 (242)
T d1xwdc1         137 -NINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNC-AFNGTQLDE--LNLSDNNNLEELPNDVFHGASGPVILDISRT  211 (242)
T ss_dssp             -CTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTT-TTTTCCEEE--EECTTCTTCCCCCTTTTTTSCCCSEEECTTS
T ss_pred             -ccccccccccccccccccceeeecccc-cccccccc-cccchhhhc--cccccccccccccHHHhcCCCCCCEEECCCC
Confidence             11001110 111111 24444444432 22222222 122333333  5555566677777776778889999999874


Q ss_pred             CCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCccc
Q 043667          242 PKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQ  282 (387)
Q Consensus       242 ~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~  282 (387)
                       .++.++..    .+       .++.+|...++..+..+|.
T Consensus       212 -~l~~l~~~----~~-------~~l~~L~~l~~~~l~~lp~  240 (242)
T d1xwdc1         212 -RIHSLPSY----GL-------ENLKKLRARSTYNLKKLPT  240 (242)
T ss_dssp             -CCCCCCSS----SC-------TTCCEEESSSEESSSCSCC
T ss_pred             -cCCccCHH----HH-------cCCcccccCcCCCCCcCCC
Confidence             46666553    23       4444444444455666664

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=8.7e-12  Score=108.73  Aligned_cols=215  Identities=18%  Similarity=0.174  Sum_probs=109.3

Q ss_pred             EEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCccee
Q 043667           12 CISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETL   89 (387)
Q Consensus        12 ~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L   89 (387)
                      ..++....++|..+    .+++++|+|+++ .++.+|.  +..+++|++|+++++ .++.++...+     .....++.+
T Consensus        17 ~c~~~~L~~iP~~i----p~~~~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~ls~n-~l~~i~~~~~-----~~~~~~~~l   85 (284)
T d1ozna_          17 SCPQQGLQAVPVGI----PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSN-VLARIDAAAF-----TGLALLEQL   85 (284)
T ss_dssp             ECCSSCCSSCCTTC----CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTT-----TTCTTCCEE
T ss_pred             EcCCCCCCccCCCC----CCCCCEEECcCC-cCCCCCHHHhhccccccccccccc-cccccccccc-----ccccccccc
Confidence            33455556666544    246788888774 6777774  777788888888777 5555554332     234455555


Q ss_pred             eccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCCCCCccEEEeccCccccccccCCCCcceEEEcCccce
Q 043667           90 RFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIGGCKKV  169 (387)
Q Consensus        90 ~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~i~~~~~~  169 (387)
                      .......+.....    ..+..+++|+.|+++++.. . .++.                 ..+...++|+.+++.++...
T Consensus        86 ~~~~~~~~~~l~~----~~~~~l~~L~~L~l~~n~~-~-~~~~-----------------~~~~~~~~L~~l~l~~N~l~  142 (284)
T d1ozna_          86 DLSDNAQLRSVDP----ATFHGLGRLHTLHLDRCGL-Q-ELGP-----------------GLFRGLAALQYLYLQDNALQ  142 (284)
T ss_dssp             ECCSCTTCCCCCT----TTTTTCTTCCEEECTTSCC-C-CCCT-----------------TTTTTCTTCCEEECCSSCCC
T ss_pred             ccccccccccccc----hhhcccccCCEEecCCccc-c-cccc-----------------cccchhcccchhhhcccccc
Confidence            4444444333322    2333345555555544321 1 0000                 12223334444444433221


Q ss_pred             eEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchh
Q 043667          170 VWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVA  249 (387)
Q Consensus       170 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~  249 (387)
                      .                        ++......+++|++  +.+.++ .+..++...+..+++|+.+.++++ .+..+.+
T Consensus       143 ~------------------------i~~~~f~~~~~L~~--L~l~~N-~l~~l~~~~f~~l~~L~~l~l~~N-~l~~i~~  194 (284)
T d1ozna_         143 A------------------------LPDDTFRDLGNLTH--LFLHGN-RISSVPERAFRGLHSLDRLLLHQN-RVAHVHP  194 (284)
T ss_dssp             C------------------------CCTTTTTTCTTCCE--EECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECT
T ss_pred             c------------------------cChhHhccccchhh--cccccC-cccccchhhhccccccchhhhhhc-cccccCh
Confidence            1                        11111223333333  444433 234444444556677777777764 3334433


Q ss_pred             hHHHHHHhhhhhccCCccEEEeccCCCCCCcc-cccCCCCCccEEEecC
Q 043667          250 EEEKDQQQQLCELSCRLEYLRLRYCKGLVKLP-QSSLSLSSLREIDIYD  297 (387)
Q Consensus       250 ~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~  297 (387)
                      +    ++..+    ++|++|+++++. +..++ ..++.+++|+.|++++
T Consensus       195 ~----~f~~l----~~L~~L~l~~N~-i~~~~~~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         195 H----AFRDL----GRLMTLYLFANN-LSALPTEALAPLRALQYLRLND  234 (284)
T ss_dssp             T----TTTTC----TTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCS
T ss_pred             h----Hhhhh----hhcccccccccc-cccccccccccccccCEEEecC
Confidence            3    34444    777777777644 44444 3466777777777776

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.42  E-value=1.5e-12  Score=109.78  Aligned_cols=186  Identities=14%  Similarity=0.145  Sum_probs=93.8

Q ss_pred             CCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCc
Q 043667           30 FSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGV  109 (387)
Q Consensus        30 l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i  109 (387)
                      +.+|+.|++.+| .++.++.++.+++|++|+++++ .+..+..       ...++++++++++++.. +..      .++
T Consensus        40 l~~L~~L~l~~~-~i~~l~~l~~l~~L~~L~ls~n-~i~~~~~-------l~~l~~l~~l~~~~n~~-~~i------~~l  103 (227)
T d1h6ua2          40 LDGITTLSAFGT-GVTTIEGVQYLNNLIGLELKDN-QITDLAP-------LKNLTKITELELSGNPL-KNV------SAI  103 (227)
T ss_dssp             HHTCCEEECTTS-CCCCCTTGGGCTTCCEEECCSS-CCCCCGG-------GTTCCSCCEEECCSCCC-SCC------GGG
T ss_pred             cCCcCEEECCCC-CCCcchhHhcCCCCcEeecCCc-eeecccc-------ccccccccccccccccc-ccc------ccc
Confidence            667777777765 5666666777777777777776 3333321       23456666666664321 111      223


Q ss_pred             cCCCCcceEeeccCcccccccCCCCCCccEEEeccCcccc-ccccCCCCcceEEEcCccceeEecccccCCCCcEEeccC
Q 043667          110 EGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELS-VSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRD  188 (387)
Q Consensus       110 ~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~  188 (387)
                      ..+++|+.+.++++...........+.++.+.+..+.... ..+...                       ++|++|.+.+
T Consensus       104 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----------------------~~L~~L~l~~  160 (227)
T d1h6ua2         104 AGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGL-----------------------TNLQYLSIGN  160 (227)
T ss_dssp             TTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGC-----------------------TTCCEEECCS
T ss_pred             cccccccccccccccccccchhccccchhhhhchhhhhchhhhhccc-----------------------cccccccccc
Confidence            3455666666655432210011123344444443332111 123333                       4444444443


Q ss_pred             CCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccE
Q 043667          189 TSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEY  268 (387)
Q Consensus       189 ~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~  268 (387)
                      +... ....  ...+++|++  +.++++ .++.++.  ++.+++|++|++++| .++++++      +..+    ++|+.
T Consensus       161 n~~~-~~~~--l~~l~~L~~--L~Ls~n-~l~~l~~--l~~l~~L~~L~Ls~N-~lt~i~~------l~~l----~~L~~  221 (227)
T d1h6ua2         161 AQVS-DLTP--LANLSKLTT--LKADDN-KISDISP--LASLPNLIEVHLKNN-QISDVSP------LANT----SNLFI  221 (227)
T ss_dssp             SCCC-CCGG--GTTCTTCCE--EECCSS-CCCCCGG--GGGCTTCCEEECTTS-CCCBCGG------GTTC----TTCCE
T ss_pred             cccc-cchh--hccccccee--cccCCC-ccCCChh--hcCCCCCCEEECcCC-cCCCCcc------cccC----CCCCE
Confidence            3211 1111  234455555  555554 3444432  456788888888876 5666643      4444    78888


Q ss_pred             EEecc
Q 043667          269 LRLRY  273 (387)
Q Consensus       269 L~l~~  273 (387)
                      |++++
T Consensus       222 L~lsn  226 (227)
T d1h6ua2         222 VTLTN  226 (227)
T ss_dssp             EEEEE
T ss_pred             EEeeC
Confidence            87764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.5e-12  Score=111.18  Aligned_cols=54  Identities=15%  Similarity=0.253  Sum_probs=28.6

Q ss_pred             CCccEEEeecCCCCCCCCC-cCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccc
Q 043667           31 SNLVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDA   93 (387)
Q Consensus        31 ~~L~~L~l~~c~~~~~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~   93 (387)
                      ..+.+.+-++ .+++.+|. +.  +++++|+++++ .++.++...+     ..+++|++|++++
T Consensus        10 ~~~~~v~C~~-~~L~~iP~~lp--~~l~~L~Ls~N-~i~~l~~~~f-----~~l~~L~~L~L~~   64 (266)
T d1p9ag_          10 ASHLEVNCDK-RNLTALPPDLP--KDTTILHLSEN-LLYTFSLATL-----MPYTRLTQLNLDR   64 (266)
T ss_dssp             TTCCEEECTT-SCCSSCCSCCC--TTCCEEECTTS-CCSEEEGGGG-----TTCTTCCEEECTT
T ss_pred             CCCeEEEccC-CCCCeeCcCcC--cCCCEEECcCC-cCCCcCHHHh-----hcccccccccccc
Confidence            3444455544 35666764 32  46777777777 5555554322     2344444444443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.41  E-value=2.7e-12  Score=108.13  Aligned_cols=165  Identities=16%  Similarity=0.150  Sum_probs=116.7

Q ss_pred             CCCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCC
Q 043667            5 HKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFP   84 (387)
Q Consensus         5 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~   84 (387)
                      ..+|++|.+.++.+..++ .+..  +++|++|++++| .+..+++++.+++|+++++.++ .++.++.       +..++
T Consensus        40 l~~L~~L~l~~~~i~~l~-~l~~--l~~L~~L~ls~n-~i~~~~~l~~l~~l~~l~~~~n-~~~~i~~-------l~~l~  107 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTIE-GVQY--LNNLIGLELKDN-QITDLAPLKNLTKITELELSGN-PLKNVSA-------IAGLQ  107 (227)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGG--CTTCCEEECCSS-CCCCCGGGTTCCSCCEEECCSC-CCSCCGG-------GTTCT
T ss_pred             cCCcCEEECCCCCCCcch-hHhc--CCCCcEeecCCc-eeeccccccccccccccccccc-ccccccc-------ccccc
Confidence            468999999999988885 4655  999999999996 6788888999999999999988 4555542       35689


Q ss_pred             CcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCCCCCccEEEeccCcccc-ccccCCCCcceEEE
Q 043667           85 RLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELS-VSVSSLPALCKLKI  163 (387)
Q Consensus        85 ~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~L~~L~i  163 (387)
                      +|+++.+.++.....       ..+...+.++.+.+.++..........+++|+.|.+.++.... ..++.+++|++|++
T Consensus       108 ~L~~l~l~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~L  180 (227)
T d1h6ua2         108 SIKTLDLTSTQITDV-------TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA  180 (227)
T ss_dssp             TCCEEECTTSCCCCC-------GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred             ccccccccccccccc-------chhccccchhhhhchhhhhchhhhhccccccccccccccccccchhhcccccceeccc
Confidence            999999987653221       1222467888888877643321222457889999998876332 45677888888888


Q ss_pred             cCccceeEecccccCCCCcEEeccCC
Q 043667          164 GGCKKVVWRSATDHLGSQNSVVCRDT  189 (387)
Q Consensus       164 ~~~~~~~~~~~~~~~~~L~~L~l~~~  189 (387)
                      +++. ++....+..+++|++|+++++
T Consensus       181 s~n~-l~~l~~l~~l~~L~~L~Ls~N  205 (227)
T d1h6ua2         181 DDNK-ISDISPLASLPNLIEVHLKNN  205 (227)
T ss_dssp             CSSC-CCCCGGGGGCTTCCEEECTTS
T ss_pred             CCCc-cCCChhhcCCCCCCEEECcCC
Confidence            7764 232223455566666666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.36  E-value=5.1e-12  Score=105.04  Aligned_cols=76  Identities=16%  Similarity=0.161  Sum_probs=38.5

Q ss_pred             CCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCc
Q 043667            7 NLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRL   86 (387)
Q Consensus         7 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L   86 (387)
                      +|++|+++++.+..++. +..  +++|++|++++| .++.+++++.+++|++|+++++ .++.++.       ...+++|
T Consensus        47 ~L~~L~l~~~~i~~l~~-l~~--l~~L~~L~L~~n-~i~~l~~~~~l~~L~~L~l~~n-~i~~l~~-------l~~l~~L  114 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQG-IQY--LPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDEN-KVKDLSS-------LKDLKKL  114 (210)
T ss_dssp             TCCEEECTTSCCCCCTT-GGG--CTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCGGG-------GTTCTTC
T ss_pred             CccEEECcCCCCCCchh-Hhh--CCCCCEEeCCCc-cccCccccccCccccccccccc-ccccccc-------ccccccc
Confidence            45555555555544432 222  555666666554 4555555555556666665555 3443331       2234555


Q ss_pred             ceeecccc
Q 043667           87 ETLRFDAM   94 (387)
Q Consensus        87 ~~L~l~~~   94 (387)
                      +.|++.++
T Consensus       115 ~~L~l~~~  122 (210)
T d1h6ta2         115 KSLSLEHN  122 (210)
T ss_dssp             CEEECTTS
T ss_pred             cccccccc
Confidence            55555543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.8e-11  Score=104.57  Aligned_cols=204  Identities=19%  Similarity=0.184  Sum_probs=118.1

Q ss_pred             ccccccCCCCC-CccEEEeccCcc--cc-ccccCCCCcceEEEcCccceeEe-cccccCCCCcEEeccCCCCcccccCCC
Q 043667          125 KLQGTFPEHLP-ALEMLVIEACKE--LS-VSVSSLPALCKLKIGGCKKVVWR-SATDHLGSQNSVVCRDTSNQVFLAGPL  199 (387)
Q Consensus       125 ~l~~~~~~~~~-~L~~L~l~~~~~--l~-~~~~~~~~L~~L~i~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~  199 (387)
                      +++ .+|..+| ++++|+++++..  ++ ..+.++++|++|+++++....+. ......+.++++.+.....+..++...
T Consensus        22 ~L~-~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~  100 (284)
T d1ozna_          22 GLQ-AVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT  100 (284)
T ss_dssp             CCS-SCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTT
T ss_pred             CCC-ccCCCCCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchh
Confidence            355 5666544 688888887652  22 34677788888888776544433 223345667777666665565555444


Q ss_pred             CCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCC
Q 043667          200 KPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVK  279 (387)
Q Consensus       200 ~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~  279 (387)
                      ...+++|++  +.+..+.. ..++...+...++|+.+++++ ..++.+++.    .+...    ++|++|+++++ .++.
T Consensus       101 ~~~l~~L~~--L~l~~n~~-~~~~~~~~~~~~~L~~l~l~~-N~l~~i~~~----~f~~~----~~L~~L~l~~N-~l~~  167 (284)
T d1ozna_         101 FHGLGRLHT--LHLDRCGL-QELGPGLFRGLAALQYLYLQD-NALQALPDD----TFRDL----GNLTHLFLHGN-RISS  167 (284)
T ss_dssp             TTTCTTCCE--EECTTSCC-CCCCTTTTTTCTTCCEEECCS-SCCCCCCTT----TTTTC----TTCCEEECCSS-CCCE
T ss_pred             hcccccCCE--EecCCccc-ccccccccchhcccchhhhcc-ccccccChh----Hhccc----cchhhcccccC-cccc
Confidence            556666666  66665432 333333345566677777766 345555443    23333    66777777664 3555


Q ss_pred             ccc-ccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCccc-cccccCCCCCcceEeccc
Q 043667          280 LPQ-SSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLP-EAWMCDTNSSLETLKIER  346 (387)
Q Consensus       280 ~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~-~~~~~~~~~~L~~L~l~~  346 (387)
                      ++. .+..+++|+.+++.+ ++++.+....+.  ++|++|+++++. +..++ ..+..+.+  |++|++++
T Consensus       168 l~~~~f~~l~~L~~l~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~--L~~L~l~~  234 (284)
T d1ozna_         168 VPERAFRGLHSLDRLLLHQ-NRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRA--LQYLRLND  234 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTT--CCEEECCS
T ss_pred             cchhhhccccccchhhhhh-ccccccChhHhhhhhhcccccccccc-cccccccccccccc--cCEEEecC
Confidence            543 345666777777766 345555443333  667777776643 44444 34444555  77777766

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.34  E-value=9.5e-12  Score=102.47  Aligned_cols=143  Identities=12%  Similarity=0.122  Sum_probs=63.5

Q ss_pred             CCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCc
Q 043667           30 FSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGV  109 (387)
Q Consensus        30 l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i  109 (387)
                      ++++++|+++++ .+++++.++.+++|++|+++++ .++.++.       +..+++|++|++.++.. ...      .++
T Consensus        39 l~~l~~L~l~~~-~i~~l~~l~~l~nL~~L~Ls~N-~l~~~~~-------l~~l~~L~~L~l~~n~~-~~~------~~l  102 (199)
T d2omxa2          39 LDQVTTLQADRL-GIKSIDGVEYLNNLTQINFSNN-QLTDITP-------LKNLTKLVDILMNNNQI-ADI------TPL  102 (199)
T ss_dssp             HTTCCEEECTTS-CCCCCTTGGGCTTCCEEECCSS-CCCCCGG-------GTTCTTCCEEECCSSCC-CCC------GGG
T ss_pred             hcCCCEEECCCC-CCCCccccccCCCcCcCccccc-cccCccc-------ccCCccccccccccccc-ccc------ccc
Confidence            344455555443 3444444444555555555544 3333221       12344455555444321 111      112


Q ss_pred             cCCCCcceEeeccCcccccccCCCCCCccEEEeccCcccc-ccccCCCCcceEEEcCccceeEecccccCCCCcEEeccC
Q 043667          110 EGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELS-VSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRD  188 (387)
Q Consensus       110 ~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~  188 (387)
                      +.+++|+.+++.++..........+++|+.++++++.... ..+..+++++.|++.++....+ ..+..+++|++|++++
T Consensus       103 ~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~l-~~l~~l~~L~~L~ls~  181 (199)
T d2omxa2         103 ANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDL-KPLANLTTLERLDISS  181 (199)
T ss_dssp             TTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCC-GGGTTCTTCCEEECCS
T ss_pred             ccccccccccccccccccccccchhhhhHHhhhhhhhhcccccccccccccccccccccccCC-ccccCCCCCCEEECCC
Confidence            2345555555554432221112234555555555543111 2345556666666665533222 2345566666666666


Q ss_pred             C
Q 043667          189 T  189 (387)
Q Consensus       189 ~  189 (387)
                      +
T Consensus       182 N  182 (199)
T d2omxa2         182 N  182 (199)
T ss_dssp             S
T ss_pred             C
Confidence            5

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.8e-11  Score=105.62  Aligned_cols=171  Identities=16%  Similarity=0.145  Sum_probs=113.4

Q ss_pred             CCcceEEEcCccceeEe-cccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCcc
Q 043667          156 PALCKLKIGGCKKVVWR-SATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLK  234 (387)
Q Consensus       156 ~~L~~L~i~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~  234 (387)
                      +++++|+++++....++ ..+..+++|++|+++++ .++.++..  ..+++|++  +.++++. +...+.. +..+++|+
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~~--~~l~~L~~--L~Ls~N~-l~~~~~~-~~~l~~L~  103 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD--GTLPVLGT--LDLSHNQ-LQSLPLL-GQTLPALT  103 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC--SCCTTCCE--EECCSSC-CSSCCCC-TTTCTTCC
T ss_pred             cCCCEEECcCCcCCCcCHHHhhccccccccccccc-cccccccc--cccccccc--ccccccc-ccccccc-cccccccc
Confidence            47899999887655544 45677888999998876 34555432  35677777  7777653 4444443 56678888


Q ss_pred             EEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccc-cCCCCCccEEEecCCCCceecCCCCcC--C
Q 043667          235 KLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQS-SLSLSSLREIDIYDCSSLVSFPEVALP--S  311 (387)
Q Consensus       235 ~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~--~  311 (387)
                      .|+++++. ...++..    .+..+    .++++|++.++ .++.++.. +..+++++.+++++ ++++.++...+.  +
T Consensus       104 ~L~l~~~~-~~~~~~~----~~~~l----~~l~~L~l~~n-~l~~l~~~~~~~l~~l~~l~l~~-N~l~~~~~~~~~~l~  172 (266)
T d1p9ag_         104 VLDVSFNR-LTSLPLG----ALRGL----GELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLNGLE  172 (266)
T ss_dssp             EEECCSSC-CCCCCSS----TTTTC----TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTT-SCCSCCCTTTTTTCT
T ss_pred             cccccccc-cceeecc----ccccc----ccccccccccc-ccceeccccccccccchhccccc-ccccccCcccccccc
Confidence            88887753 3333322    23333    77888888764 46666543 45677888888877 467777665443  7


Q ss_pred             CceEEEeccCCCCCccccccccCCCCCcceEecccC
Q 043667          312 KLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERC  347 (387)
Q Consensus       312 ~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c  347 (387)
                      +|++|+++++ .++++|..+....+  |+.|++++.
T Consensus       173 ~L~~L~Ls~N-~L~~lp~~~~~~~~--L~~L~L~~N  205 (266)
T d1p9ag_         173 NLDTLLLQEN-SLYTIPKGFFGSHL--LPFAFLHGN  205 (266)
T ss_dssp             TCCEEECCSS-CCCCCCTTTTTTCC--CSEEECCSC
T ss_pred             ccceeecccC-CCcccChhHCCCCC--CCEEEecCC
Confidence            8888888874 47788877666666  888888763

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=5.7e-11  Score=100.82  Aligned_cols=184  Identities=15%  Similarity=0.211  Sum_probs=109.2

Q ss_pred             cCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHH
Q 043667          177 HLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQ  256 (387)
Q Consensus       177 ~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  256 (387)
                      .+++|++|+++++.....++...+..++.+++  +.+..+..+..++...+..+++|+++++.++ .+...+...   .+
T Consensus        51 ~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~--l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~---~~  124 (242)
T d1xwdc1          51 GFGDLEKIEISQNDVLEVIEADVFSNLPKLHE--IRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVH---KI  124 (242)
T ss_dssp             TCTTCCEEEEESCTTCCEECSSSEESCTTCCE--EEEECCTTCCEECTTSEECCTTCCEEEEESC-CCCSCCCCT---TT
T ss_pred             ccchhhhhhhccccccceeecccccccccccc--ccccccccccccccccccccccccccccchh-hhccccccc---cc
Confidence            34444444444443333222222333444455  5555555565555555677888888888875 344433211   11


Q ss_pred             hhhhhccCCccEEEe--ccCCCCCCccc-ccCCC-CCccEEEecCCCCceecCCCCcC-CCceEEEeccCCCCCccccc-
Q 043667          257 QQLCELSCRLEYLRL--RYCKGLVKLPQ-SSLSL-SSLREIDIYDCSSLVSFPEVALP-SKLKKIEIRKCDALKSLPEA-  330 (387)
Q Consensus       257 ~~l~~~~~~L~~L~l--~~c~~l~~~~~-~~~~~-~~L~~L~l~~c~~l~~~~~~~~~-~~L~~L~l~~c~~l~~l~~~-  330 (387)
                             .+++.+..  .++..+..++. .+..+ ..++.+++.+ +.++.++...+. ++++++...+++.+++++.. 
T Consensus       125 -------~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~-n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~  196 (242)
T d1xwdc1         125 -------HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDV  196 (242)
T ss_dssp             -------CBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTT
T ss_pred             -------ccccccccccccccccccccccccccccccceeeeccc-ccccccccccccchhhhccccccccccccccHHH
Confidence                   33443332  22344555543 23333 3677888876 677888766554 67777776667788888754 


Q ss_pred             cccCCCCCcceEecccCcccccccCCCCCCCccEEeecCCcccccccc
Q 043667          331 WMCDTNSSLETLKIERCRSLTYIAGVQLPPSLKRLDIWNCDNIRTLTV  378 (387)
Q Consensus       331 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~  378 (387)
                      +..+++  |++|+++++ +++.++.. .+.+|..|..-++++++++|.
T Consensus       197 f~~l~~--L~~L~Ls~N-~l~~l~~~-~~~~l~~L~~l~~~~l~~lp~  240 (242)
T d1xwdc1         197 FHGASG--PVILDISRT-RIHSLPSY-GLENLKKLRARSTYNLKKLPT  240 (242)
T ss_dssp             TTTSCC--CSEEECTTS-CCCCCCSS-SCTTCCEEESSSEESSSCSCC
T ss_pred             hcCCCC--CCEEECCCC-cCCccCHH-HHcCCcccccCcCCCCCcCCC
Confidence            555677  999999994 68888764 456666666666677888874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.24  E-value=7.2e-11  Score=97.05  Aligned_cols=140  Identities=13%  Similarity=0.250  Sum_probs=89.6

Q ss_pred             cccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCC
Q 043667          227 LQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPE  306 (387)
Q Consensus       227 l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  306 (387)
                      ++.+++|++|+++++ .+..+++      +..+    ++|++|++.++. +..++. +..+++|+.++++++. ...+..
T Consensus        58 l~~l~nL~~L~Ls~N-~l~~~~~------l~~l----~~L~~L~l~~n~-~~~~~~-l~~l~~L~~L~l~~~~-~~~~~~  123 (199)
T d2omxa2          58 VEYLNNLTQINFSNN-QLTDITP------LKNL----TKLVDILMNNNQ-IADITP-LANLTNLTGLTLFNNQ-ITDIDP  123 (199)
T ss_dssp             GGGCTTCCEEECCSS-CCCCCGG------GTTC----TTCCEEECCSSC-CCCCGG-GTTCTTCSEEECCSSC-CCCCGG
T ss_pred             cccCCCcCcCccccc-cccCccc------ccCC----cccccccccccc-cccccc-cccccccccccccccc-cccccc
Confidence            456777888888775 4555432      3444    778888887653 455553 6677788888887653 333332


Q ss_pred             CCcCCCceEEEeccCCCCCccccccccCCCCCcceEecccCcccccccCCCCCCCccEEeecCCccccccccccccccCC
Q 043667          307 VALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGVQLPPSLKRLDIWNCDNIRTLTVEEGVQSSS  386 (387)
Q Consensus       307 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~~~  386 (387)
                      ....++|+.++++++. +..++. +....+  |+.|++.+| ++++++.-+.+++|++|++++| +++++++-.+++.|+
T Consensus       124 ~~~l~~L~~L~l~~n~-l~~~~~-l~~~~~--L~~L~l~~n-~l~~l~~l~~l~~L~~L~ls~N-~i~~i~~l~~L~~L~  197 (199)
T d2omxa2         124 LKNLTNLNRLELSSNT-ISDISA-LSGLTS--LQQLNFSSN-QVTDLKPLANLTTLERLDISSN-KVSDISVLAKLTNLE  197 (199)
T ss_dssp             GTTCTTCSEEECCSSC-CCCCGG-GTTCTT--CSEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCS
T ss_pred             cchhhhhHHhhhhhhh-hccccc-cccccc--ccccccccc-cccCCccccCCCCCCEEECCCC-CCCCCccccCCCCCC
Confidence            2223778888887753 565542 444555  888888775 6777664455678888888886 478877555566654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.22  E-value=6e-11  Score=98.40  Aligned_cols=165  Identities=16%  Similarity=0.178  Sum_probs=88.6

Q ss_pred             CCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCc
Q 043667           30 FSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGV  109 (387)
Q Consensus        30 l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i  109 (387)
                      +.+|+.|++++| .++.++.+..+++|++|+++++ .++.++.       ...+++|++|++.++ .+++.      ..+
T Consensus        45 L~~L~~L~l~~~-~i~~l~~l~~l~~L~~L~L~~n-~i~~l~~-------~~~l~~L~~L~l~~n-~i~~l------~~l  108 (210)
T d1h6ta2          45 LNSIDQIIANNS-DIKSVQGIQYLPNVTKLFLNGN-KLTDIKP-------LANLKNLGWLFLDEN-KVKDL------SSL  108 (210)
T ss_dssp             HHTCCEEECTTS-CCCCCTTGGGCTTCCEEECCSS-CCCCCGG-------GTTCTTCCEEECCSS-CCCCG------GGG
T ss_pred             hcCccEEECcCC-CCCCchhHhhCCCCCEEeCCCc-cccCccc-------cccCccccccccccc-ccccc------ccc
Confidence            566777777775 6666666777777777777777 4444432       134566666666553 22222      122


Q ss_pred             cCCCCcceEeeccCcccccccCCCCCCccEEEeccCccccccccCCCCcceEEEcCccceeEecccccCCCCcEEeccCC
Q 043667          110 EGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDT  189 (387)
Q Consensus       110 ~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~  189 (387)
                      ..+++|+.|++.++....  +                   ..+..+++++.+++.++.... ......+++|++++++++
T Consensus       109 ~~l~~L~~L~l~~~~~~~--~-------------------~~l~~l~~l~~l~~~~n~l~~-~~~~~~l~~L~~l~l~~n  166 (210)
T d1h6ta2         109 KDLKKLKSLSLEHNGISD--I-------------------NGLVHLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDN  166 (210)
T ss_dssp             TTCTTCCEEECTTSCCCC--C-------------------GGGGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSS
T ss_pred             cccccccccccccccccc--c-------------------ccccccccccccccccccccc-cccccccccccccccccc
Confidence            235555555555442211  1                   234444555555554443221 223344566666666654


Q ss_pred             CCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecC
Q 043667          190 SNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDW  240 (387)
Q Consensus       190 ~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  240 (387)
                      . +..++.  ...+++|++  +.++++ .++.++.  +..+++|++|++++
T Consensus       167 ~-l~~i~~--l~~l~~L~~--L~Ls~N-~i~~l~~--l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         167 Q-ISDIVP--LAGLTKLQN--LYLSKN-HISDLRA--LAGLKNLDVLELFS  209 (210)
T ss_dssp             C-CCCCGG--GTTCTTCCE--EECCSS-CCCBCGG--GTTCTTCSEEEEEE
T ss_pred             c-cccccc--ccCCCCCCE--EECCCC-CCCCChh--hcCCCCCCEEEccC
Confidence            2 222221  245566666  666665 3555552  56788899988864

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.3e-10  Score=91.96  Aligned_cols=108  Identities=18%  Similarity=0.179  Sum_probs=82.4

Q ss_pred             CCCCCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccC
Q 043667            3 EPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIP   82 (387)
Q Consensus         3 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~   82 (387)
                      ..+.++|+|+++++.+..+|..+..  +++|+.|+++++ .+..++.++.+++|++|+++++ .++.++...     ...
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~~~--l~~L~~L~Ls~N-~i~~l~~~~~l~~L~~L~ls~N-~i~~l~~~~-----~~~   85 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLGAT--LDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNN-RICRIGEGL-----DQA   85 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGG--TTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSS-CCCEECSCH-----HHH
T ss_pred             cCcCcCcEEECCCCCCCccCccccc--cccCCEEECCCC-CCCccCCcccCcchhhhhcccc-cccCCCccc-----ccc
Confidence            4567899999999999999876554  899999999996 7888888999999999999999 677776543     235


Q ss_pred             CCCcceeeccccCCccccc-cCcCCCCccCCCCcceEeeccCc
Q 043667           83 FPRLETLRFDAMLGWEDWI-PLRSGQGVEGFPKLRELHILRCS  124 (387)
Q Consensus        83 ~~~L~~L~l~~~~~l~~~~-~~~~~~~i~~~~~L~~L~l~~~~  124 (387)
                      +++|++|++.++. +..+. .    ..+..+++|+.+++++++
T Consensus        86 l~~L~~L~L~~N~-i~~~~~l----~~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          86 LPDLTELILTNNS-LVELGDL----DPLASLKSLTYLCILRNP  123 (162)
T ss_dssp             CTTCCEEECCSCC-CCCGGGG----GGGGGCTTCCEEECCSSG
T ss_pred             ccccccceecccc-ccccccc----cccccccccchhhcCCCc
Confidence            7889999888753 33321 1    223357788888887764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.1e-11  Score=115.01  Aligned_cols=349  Identities=17%  Similarity=0.140  Sum_probs=173.3

Q ss_pred             CCCcEEEEcCcCCCC--CCCccCCccCCCccEEEeecCCCCCCCC-----C-cCCcCCCcEEEecCCCCceEeCccccCC
Q 043667            6 KNLEQFCISGYRGAK--FPTWFGDSSFSNLVTLKFEYCGMCPTLP-----S-VGQLPSLKHLAVCGMTSVKRLGSEFYGK   77 (387)
Q Consensus         6 ~~L~~L~l~~~~~~~--~p~~~~~~~l~~L~~L~l~~c~~~~~l~-----~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~   77 (387)
                      .+|+.|+++++.+..  +.+.+..  ++++++|++++| .+++..     . +..+++|++|+++++ .+...+......
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~--l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~   77 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPL--LQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQ   77 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHH--HTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHH
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHh--CCCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHH
Confidence            478999999887654  2333333  889999999998 454221     1 567899999999988 443322111110


Q ss_pred             CcccCCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCccccc---ccC----C------------------
Q 043667           78 GAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQG---TFP----E------------------  132 (387)
Q Consensus        78 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~---~~~----~------------------  132 (387)
                      .......+|++|++.++. +++.....-...+..+++|++|+++++.--..   .+.    .                  
T Consensus        78 ~l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  156 (460)
T d1z7xw1          78 GLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA  156 (460)
T ss_dssp             TTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred             HHhcCCCCCCEEECCCCC-ccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchh
Confidence            001123579999999874 43322100001233578999999987632100   000    0                  


Q ss_pred             ----------CCCCccEEEeccCcccc-------ccc-cCCCCcceEEEcCcccee-----EecccccCCCCcEEeccCC
Q 043667          133 ----------HLPALEMLVIEACKELS-------VSV-SSLPALCKLKIGGCKKVV-----WRSATDHLGSQNSVVCRDT  189 (387)
Q Consensus       133 ----------~~~~L~~L~l~~~~~l~-------~~~-~~~~~L~~L~i~~~~~~~-----~~~~~~~~~~L~~L~l~~~  189 (387)
                                ..+.++.+.++++....       ..+ ........+.+..+....     ........+.++.+.+.++
T Consensus       157 ~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n  236 (460)
T d1z7xw1         157 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN  236 (460)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred             hhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhc
Confidence                      01234444443332111       000 111233344444332211     1112233455666666554


Q ss_pred             CCccc----ccCCCCCCCccccceeEEEcCCCCccccc---ccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhc
Q 043667          190 SNQVF----LAGPLKPQLPKLEELILSTKEQTYIWKSH---DGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCEL  262 (387)
Q Consensus       190 ~~l~~----~~~~~~~~l~~L~~l~L~l~~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~  262 (387)
                      .....    ...........++.  +.++++.......   ...+...+.++.+++++++ +.......+   ...+...
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~l~~--l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~-i~~~~~~~l---~~~l~~~  310 (460)
T d1z7xw1         237 KLGDVGMAELCPGLLHPSSRLRT--LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLL---CETLLEP  310 (460)
T ss_dssp             BCHHHHHHHHHHHHTSTTCCCCE--EECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHH---HHHHTST
T ss_pred             cccccccchhhcccccccccccc--ccccccccccccccccccccccccccccccccccc-ccccccchh---hcccccc
Confidence            32111    00000233445555  6666654322111   0112346677777777642 322111111   1111112


Q ss_pred             cCCccEEEeccCCCCCCc-----ccccCCCCCccEEEecCCCCceec-----CCC--CcCCCceEEEeccCCCCCc----
Q 043667          263 SCRLEYLRLRYCKGLVKL-----PQSSLSLSSLREIDIYDCSSLVSF-----PEV--ALPSKLKKIEIRKCDALKS----  326 (387)
Q Consensus       263 ~~~L~~L~l~~c~~l~~~-----~~~~~~~~~L~~L~l~~c~~l~~~-----~~~--~~~~~L~~L~l~~c~~l~~----  326 (387)
                      ...|+.+++.+|. ++..     ...+...++|++|+++++ .+++.     ...  ...+.|++|++++|. +++    
T Consensus       311 ~~~L~~l~l~~~~-l~~~~~~~l~~~~~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~-i~~~~~~  387 (460)
T d1z7xw1         311 GCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCS  387 (460)
T ss_dssp             TCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHH
T ss_pred             ccccccccccccc-hhhhhhhhcccccccccchhhhheeee-cccCcccchhhhhhhcccCCCCEEECCCCC-CChHHHH
Confidence            3578888887764 3321     112335567888888874 55432     111  112568888888874 643    


Q ss_pred             -cccccccCCCCCcceEecccCcccccccCC-------CCCCCccEEeecCCc
Q 043667          327 -LPEAWMCDTNSSLETLKIERCRSLTYIAGV-------QLPPSLKRLDIWNCD  371 (387)
Q Consensus       327 -l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-------~~~~~L~~L~l~~C~  371 (387)
                       +++.+...+.  |++|+++++ ++++-...       .....|++|++.++.
T Consensus       388 ~l~~~l~~~~~--L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~  437 (460)
T d1z7xw1         388 SLAATLLANHS--LRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIY  437 (460)
T ss_dssp             HHHHHHHHCCC--CCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred             HHHHHHhcCCC--CCEEECCCC-cCCHHHHHHHHHHHHhCCCccCEEECCCCC
Confidence             3344444555  888888884 66542111       123468888888754

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.86  E-value=6.4e-09  Score=77.92  Aligned_cols=84  Identities=20%  Similarity=0.204  Sum_probs=47.3

Q ss_pred             CCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCCCcccc--ccccCCCCCcce
Q 043667          264 CRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPE--AWMCDTNSSLET  341 (387)
Q Consensus       264 ~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~~~~~~~L~~  341 (387)
                      ++|++|++++ +.++.+|..+..+++|+.|++++ +.++.++.....++|++++++++ .+++++.  .+..++.  |+.
T Consensus        20 ~~L~~L~ls~-N~l~~lp~~~~~l~~L~~L~l~~-N~i~~l~~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~~~~--L~~   94 (124)
T d1dcea3          20 LLVTHLDLSH-NRLRALPPALAALRCLEVLQASD-NALENVDGVANLPRLQELLLCNN-RLQQSAAIQPLVSCPR--LVL   94 (124)
T ss_dssp             TTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCS-SCCCCCGGGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTT--CCE
T ss_pred             CCCCEEECCC-CccCcchhhhhhhhccccccccc-ccccccCccccccccCeEECCCC-ccCCCCCchhhcCCCC--CCE
Confidence            6666666665 34566665566666666666666 45665553333366666666653 3555442  2333444  667


Q ss_pred             EecccCcccccc
Q 043667          342 LKIERCRSLTYI  353 (387)
Q Consensus       342 L~l~~c~~l~~~  353 (387)
                      +++++ +.++..
T Consensus        95 L~l~~-N~i~~~  105 (124)
T d1dcea3          95 LNLQG-NSLCQE  105 (124)
T ss_dssp             EECTT-SGGGGS
T ss_pred             EECCC-CcCCcC
Confidence            77666 344443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.82  E-value=1.4e-08  Score=75.95  Aligned_cols=100  Identities=15%  Similarity=0.153  Sum_probs=72.7

Q ss_pred             cEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC-cCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcc
Q 043667            9 EQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLE   87 (387)
Q Consensus         9 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~   87 (387)
                      |+|+++++.+..++. ++.  +++|++|+++++ .++.+|. ++.+++|+.|+++++ .++.++.       ...+++|+
T Consensus         1 R~L~Ls~n~l~~l~~-l~~--l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~N-~i~~l~~-------~~~l~~L~   68 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQ--LLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVDG-------VANLPRLQ   68 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGG--GTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCGG-------GTTCSSCC
T ss_pred             CEEEcCCCCCCCCcc-ccc--CCCCCEEECCCC-ccCcchhhhhhhhcccccccccc-cccccCc-------cccccccC
Confidence            678999998888875 554  889999999885 7888875 888999999999988 6666642       35688888


Q ss_pred             eeeccccCCccccccCcCCCCccCCCCcceEeeccCc
Q 043667           88 TLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCS  124 (387)
Q Consensus        88 ~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~  124 (387)
                      +|++++.. +..+..   ...+..+++|+.+++++++
T Consensus        69 ~L~l~~N~-i~~~~~---~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          69 ELLLCNNR-LQQSAA---IQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             EEECCSSC-CCSSST---TGGGGGCTTCCEEECTTSG
T ss_pred             eEECCCCc-cCCCCC---chhhcCCCCCCEEECCCCc
Confidence            88888642 333211   0223357888888887753

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2e-08  Score=78.94  Aligned_cols=125  Identities=15%  Similarity=0.129  Sum_probs=91.1

Q ss_pred             cccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCC
Q 043667          227 LQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPE  306 (387)
Q Consensus       227 l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  306 (387)
                      +.+..++++|+++++ .+..++.     .+..+    ++|+.|+++++ .++.++ .+..+++|+.|++++ +.++.++.
T Consensus        14 ~~n~~~lr~L~L~~n-~I~~i~~-----~~~~l----~~L~~L~Ls~N-~i~~l~-~~~~l~~L~~L~ls~-N~i~~l~~   80 (162)
T d1a9na_          14 YTNAVRDRELDLRGY-KIPVIEN-----LGATL----DQFDAIDFSDN-EIRKLD-GFPLLRRLKTLLVNN-NRICRIGE   80 (162)
T ss_dssp             EECTTSCEEEECTTS-CCCSCCC-----GGGGT----TCCSEEECCSS-CCCEEC-CCCCCSSCCEEECCS-SCCCEECS
T ss_pred             ccCcCcCcEEECCCC-CCCccCc-----ccccc----ccCCEEECCCC-CCCccC-CcccCcchhhhhccc-ccccCCCc
Confidence            346778999999984 5666643     12333    89999999985 577775 578899999999998 47888876


Q ss_pred             CCc--CCCceEEEeccCCCCCcccc--ccccCCCCCcceEecccCcccccccCC-----CCCCCccEEeec
Q 043667          307 VAL--PSKLKKIEIRKCDALKSLPE--AWMCDTNSSLETLKIERCRSLTYIAGV-----QLPPSLKRLDIW  368 (387)
Q Consensus       307 ~~~--~~~L~~L~l~~c~~l~~l~~--~~~~~~~~~L~~L~l~~c~~l~~~~~~-----~~~~~L~~L~l~  368 (387)
                      ..+  .++|++|+++++. +++++.  .+..+++  |+++++++| .++..+..     ..+|+|++||-.
T Consensus        81 ~~~~~l~~L~~L~L~~N~-i~~~~~l~~l~~l~~--L~~L~l~~N-~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          81 GLDQALPDLTELILTNNS-LVELGDLDPLASLKS--LTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             CHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTT--CCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             cccccccccccceecccc-ccccccccccccccc--cchhhcCCC-ccccccchHHHHHHHCCCcCeeCCC
Confidence            543  3899999999854 777653  4455566  999999996 56665531     345788887733

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.61  E-value=1.6e-07  Score=76.03  Aligned_cols=105  Identities=17%  Similarity=0.261  Sum_probs=68.4

Q ss_pred             cccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCccc-c
Q 043667          205 KLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQ-S  283 (387)
Q Consensus       205 ~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~-~  283 (387)
                      ++++  |.+++...-..++...++.+++|++|+++++ .+..++.+    .+..+    ++|++|+++++ +++.+++ .
T Consensus        30 ~l~~--L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N-~i~~~~~~----~~~~~----~~L~~L~Ls~N-~l~~l~~~~   97 (192)
T d1w8aa_          30 HTTE--LLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPN----AFEGA----SHIQELQLGEN-KIKEISNKM   97 (192)
T ss_dssp             TCSE--EECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTT----TTTTC----TTCCEEECCSC-CCCEECSSS
T ss_pred             CCCE--EEeCCCCCcccccccccCCCceEeeeecccc-cccccccc----ccccc----cccceeeeccc-cccccCHHH
Confidence            4555  7777654333444555667788888888774 44444333    34444    77888888774 5666655 3


Q ss_pred             cCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCC
Q 043667          284 SLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCD  322 (387)
Q Consensus       284 ~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~  322 (387)
                      +.++++|+.|++++ +.++.++...+.  ++|+++++++++
T Consensus        98 F~~l~~L~~L~L~~-N~l~~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          98 FLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             STTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             HhCCCcccccccCC-ccccccCHHHhcCCcccccccccccc
Confidence            56778888888877 577777766654  778888887754

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.53  E-value=2.6e-07  Score=74.67  Aligned_cols=113  Identities=12%  Similarity=0.152  Sum_probs=66.3

Q ss_pred             CcccccccccccCCCccEEEecCCCCcc-cchhhHHHHHHhhhhhccCCccEEEeccCCCCCCc-ccccCCCCCccEEEe
Q 043667          218 YIWKSHDGLLQDICSLKKLTIDWCPKLQ-SLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKL-PQSSLSLSSLREIDI  295 (387)
Q Consensus       218 ~~~~~~~~~l~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~-~~~~~~~~~L~~L~l  295 (387)
                      .++.+|.++   .+++++|+++++ .+. .++..    .|..+    ++|++|+++++. +..+ +..+..+++|+.|++
T Consensus        19 ~L~~iP~~l---p~~l~~L~Ls~N-~i~~~~~~~----~f~~l----~~L~~L~L~~N~-i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_          19 GLKEIPRDI---PLHTTELLLNDN-ELGRISSDG----LFGRL----PHLVKLELKRNQ-LTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             CCSSCCSCC---CTTCSEEECCSC-CCCSBCCSC----SGGGC----TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEEC
T ss_pred             CcCccCCCC---CCCCCEEEeCCC-CCccccccc----ccCCC----ceEeeeeccccc-cccccccccccccccceeee
Confidence            344555542   256777777764 333 23222    34444    777777776644 3333 334556777777777


Q ss_pred             cCCCCceecCCCCcC--CCceEEEeccCCCCCcccc-ccccCCCCCcceEecccC
Q 043667          296 YDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPE-AWMCDTNSSLETLKIERC  347 (387)
Q Consensus       296 ~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~-~~~~~~~~~L~~L~l~~c  347 (387)
                      ++ +.++.++...|.  ++|++|++++ +.++.++. .+....+  |+++++++.
T Consensus        86 s~-N~l~~l~~~~F~~l~~L~~L~L~~-N~l~~i~~~~f~~l~~--L~~l~L~~N  136 (192)
T d1w8aa_          86 GE-NKIKEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNS--LTSLNLASN  136 (192)
T ss_dssp             CS-CCCCEECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTT--CCEEECTTC
T ss_pred             cc-ccccccCHHHHhCCCcccccccCC-ccccccCHHHhcCCcc--ccccccccc
Confidence            76 467777665554  6777777776 34666654 3344455  777777763

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=7.8e-09  Score=95.36  Aligned_cols=325  Identities=17%  Similarity=0.129  Sum_probs=172.1

Q ss_pred             CCCCcEEEEcCcCCCC-----CCCccCCccCCCccEEEeecCCCCCCCC--C----cC-CcCCCcEEEecCCCCceEeCc
Q 043667            5 HKNLEQFCISGYRGAK-----FPTWFGDSSFSNLVTLKFEYCGMCPTLP--S----VG-QLPSLKHLAVCGMTSVKRLGS   72 (387)
Q Consensus         5 ~~~L~~L~l~~~~~~~-----~p~~~~~~~l~~L~~L~l~~c~~~~~l~--~----~~-~l~~L~~L~l~~~~~l~~~~~   72 (387)
                      .+++|.|.++++.+..     ++..+..  +++|++|++++| .+++..  .    +. .-.+|++|++++| .+.+.+.
T Consensus        26 l~~l~~L~L~~~~i~~~~~~~l~~~L~~--~~~L~~LdLs~N-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~it~~~~  101 (460)
T d1z7xw1          26 LQQCQVVRLDDCGLTEARCKDISSALRV--NPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGC  101 (460)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHT--CTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGH
T ss_pred             CCCCCEEEeCCCCCCHHHHHHHHHHHhc--CCCCCEEECcCC-cCChHHHHHHHHHHhcCCCCCCEEECCCC-Ccccccc
Confidence            4688889998886541     1222233  788999999875 443211  1    11 2347889999888 4544332


Q ss_pred             cccCCCcccCCCCcceeeccccCCcccc-----------------ccCcCCCC------------ccCCCCcceEeeccC
Q 043667           73 EFYGKGAAIPFPRLETLRFDAMLGWEDW-----------------IPLRSGQG------------VEGFPKLRELHILRC  123 (387)
Q Consensus        73 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~-----------------~~~~~~~~------------i~~~~~L~~L~l~~~  123 (387)
                      ..... .+..+++|++|++.++. +.+.                 ........            +.....++.+.++++
T Consensus       102 ~~l~~-~l~~~~~L~~L~L~~N~-i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~  179 (460)
T d1z7xw1         102 GVLSS-TLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN  179 (460)
T ss_dssp             HHHHH-HTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred             ccccc-hhhcccccccccccccc-chhhhhhhhhhcccccccccccccccccccchhhhccccccccccccccccccccc
Confidence            11110 03457888888887643 1100                 00000000            002345666666654


Q ss_pred             cccccc-------cCCCCCCccEEEeccCcccc-------ccccCCCCcceEEEcCcccee------EecccccCCCCcE
Q 043667          124 SKLQGT-------FPEHLPALEMLVIEACKELS-------VSVSSLPALCKLKIGGCKKVV------WRSATDHLGSQNS  183 (387)
Q Consensus       124 ~~l~~~-------~~~~~~~L~~L~l~~~~~l~-------~~~~~~~~L~~L~i~~~~~~~------~~~~~~~~~~L~~  183 (387)
                      ......       +...-.....+...++....       ..+...+.++.+.+.++....      ..........++.
T Consensus       180 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~  259 (460)
T d1z7xw1         180 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT  259 (460)
T ss_dssp             BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred             ccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhcccccccccccc
Confidence            332110       11112245566666654322       234456788888887764322      1222334578889


Q ss_pred             EeccCCCCcccccCCC---CCCCccccceeEEEcCCCCcc----cccccccccCCCccEEEecCCCCcccchhhHHHHHH
Q 043667          184 VVCRDTSNQVFLAGPL---KPQLPKLEELILSTKEQTYIW----KSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQ  256 (387)
Q Consensus       184 L~l~~~~~l~~~~~~~---~~~l~~L~~l~L~l~~~~~~~----~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  256 (387)
                      ++++++..........   ....+.++.  +.++.+..-.    .+..........|+.+.++++. +.......    +
T Consensus       260 l~l~~n~i~~~~~~~~~~~l~~~~~l~~--l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~-l~~~~~~~----l  332 (460)
T d1z7xw1         260 LWIWECGITAKGCGDLCRVLRAKESLKE--LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSH----F  332 (460)
T ss_dssp             EECTTSCCCHHHHHHHHHHHHHCTTCCE--EECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHH----H
T ss_pred             cccccccccccccccccccccccccccc--cccccccccccccchhhccccccccccccccccccc-hhhhhhhh----c
Confidence            9988764322111000   122344555  6666554211    1111112234689999999874 43332222    2


Q ss_pred             hhhhhccCCccEEEeccCCCCCC-----cccccC-CCCCccEEEecCCCCceecCCCC----c--CCCceEEEeccCCCC
Q 043667          257 QQLCELSCRLEYLRLRYCKGLVK-----LPQSSL-SLSSLREIDIYDCSSLVSFPEVA----L--PSKLKKIEIRKCDAL  324 (387)
Q Consensus       257 ~~l~~~~~~L~~L~l~~c~~l~~-----~~~~~~-~~~~L~~L~l~~c~~l~~~~~~~----~--~~~L~~L~l~~c~~l  324 (387)
                      ..+....++|++|+++++. +++     +...+. ..+.|+.|++++| +++......    +  .++|++|+++++ .+
T Consensus       333 ~~~~~~~~~L~~L~Ls~N~-i~~~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~N-~i  409 (460)
T d1z7xw1         333 SSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN-CL  409 (460)
T ss_dssp             HHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS-SC
T ss_pred             ccccccccchhhhheeeec-ccCcccchhhhhhhcccCCCCEEECCCC-CCChHHHHHHHHHHhcCCCCCEEECCCC-cC
Confidence            2222233789999998864 542     333333 4678999999997 676532111    1  278999999985 46


Q ss_pred             Cc-----cccccc-cCCCCCcceEecccC
Q 043667          325 KS-----LPEAWM-CDTNSSLETLKIERC  347 (387)
Q Consensus       325 ~~-----l~~~~~-~~~~~~L~~L~l~~c  347 (387)
                      ++     +...+. ..+.  |+.|++.++
T Consensus       410 ~~~g~~~l~~~l~~~~~~--L~~l~l~~~  436 (460)
T d1z7xw1         410 GDAGILQLVESVRQPGCL--LEQLVLYDI  436 (460)
T ss_dssp             CHHHHHHHHHHHTSTTCC--CCEEECTTC
T ss_pred             CHHHHHHHHHHHHhCCCc--cCEEECCCC
Confidence            54     222221 1234  999999986

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=6.7e-07  Score=69.49  Aligned_cols=80  Identities=23%  Similarity=0.220  Sum_probs=56.9

Q ss_pred             CCccEEEeccCCCCCCccc-ccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCccccccccCCCCCcc
Q 043667          264 CRLEYLRLRYCKGLVKLPQ-SSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPEAWMCDTNSSLE  340 (387)
Q Consensus       264 ~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~  340 (387)
                      ++|++|++.+.+.++.++. .+..+++|+.|++++ ++++.++..++.  ++|++|++++ +.++.++.......+  |+
T Consensus        31 ~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~~~--l~  106 (156)
T d2ifga3          31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLSF-NALESLSWKTVQGLS--LQ  106 (156)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECCS-SCCSCCCSTTTCSCC--CC
T ss_pred             cccCeeecCCCccccccCchhhccccccCcceeec-cccCCcccccccccccccceeccC-CCCcccChhhhcccc--cc
Confidence            6788888876666777764 466788888888887 577777766554  7888888877 447777765544444  88


Q ss_pred             eEecccC
Q 043667          341 TLKIERC  347 (387)
Q Consensus       341 ~L~l~~c  347 (387)
                      +|++++.
T Consensus       107 ~L~L~~N  113 (156)
T d2ifga3         107 ELVLSGN  113 (156)
T ss_dssp             EEECCSS
T ss_pred             ccccCCC
Confidence            8888763

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.33  E-value=1.7e-09  Score=88.38  Aligned_cols=105  Identities=15%  Similarity=0.159  Sum_probs=67.7

Q ss_pred             cccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCC
Q 043667          227 LQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPE  306 (387)
Q Consensus       227 l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  306 (387)
                      ++.+++|++|+++++ .+..++      .+..+    ++|++|++++| .++.++.....+++|+.|++++ +.++.++.
T Consensus        44 l~~L~~L~~L~Ls~n-~I~~i~------~l~~l----~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l~~-N~i~~l~~  110 (198)
T d1m9la_          44 LSTLKACKHLALSTN-NIEKIS------SLSGM----ENLRILSLGRN-LIKKIENLDAVADTLEELWISY-NQIASLSG  110 (198)
T ss_dssp             HHHTTTCCEEECSEE-EESCCC------CHHHH----TTCCEEECCEE-EECSCSSHHHHHHHCCEEECSE-EECCCHHH
T ss_pred             HhcccccceeECccc-CCCCcc------cccCC----ccccChhhccc-cccccccccccccccccccccc-cccccccc
Confidence            556778888888763 566553      24445    78888888775 4666665444456788888877 36666542


Q ss_pred             CCcCCCceEEEeccCCCCCcccc--ccccCCCCCcceEecccC
Q 043667          307 VALPSKLKKIEIRKCDALKSLPE--AWMCDTNSSLETLKIERC  347 (387)
Q Consensus       307 ~~~~~~L~~L~l~~c~~l~~l~~--~~~~~~~~~L~~L~l~~c  347 (387)
                      ....++|++|+++++ .+++++.  .+..++.  |+.|+++++
T Consensus       111 ~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~--L~~L~L~~N  150 (198)
T d1m9la_         111 IEKLVNLRVLYMSNN-KITNWGEIDKLAALDK--LEDLLLAGN  150 (198)
T ss_dssp             HHHHHHSSEEEESEE-ECCCHHHHHHHTTTTT--CSEEEECSS
T ss_pred             ccccccccccccccc-hhccccccccccCCCc--cceeecCCC
Confidence            222277888888774 4666542  3444555  888888875

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.32  E-value=1.8e-07  Score=83.07  Aligned_cols=234  Identities=14%  Similarity=0.105  Sum_probs=113.0

Q ss_pred             CCCCcceEeeccCccccc-------ccCCCCCCccEEEeccCcc-------------ccccccCCCCcceEEEcCcccee
Q 043667          111 GFPKLRELHILRCSKLQG-------TFPEHLPALEMLVIEACKE-------------LSVSVSSLPALCKLKIGGCKKVV  170 (387)
Q Consensus       111 ~~~~L~~L~l~~~~~l~~-------~~~~~~~~L~~L~l~~~~~-------------l~~~~~~~~~L~~L~i~~~~~~~  170 (387)
                      ....|++|+++++. +..       ......++|+.+.++++..             +...+..+++|+.|+++++..-.
T Consensus        29 ~~~~l~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  107 (344)
T d2ca6a1          29 EDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP  107 (344)
T ss_dssp             HCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred             hCCCCCEEECcCCc-CCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccc
Confidence            46778888888752 211       1223456777777765431             11234456677777776653211


Q ss_pred             -----EecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcc
Q 043667          171 -----WRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQ  245 (387)
Q Consensus       171 -----~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~  245 (387)
                           +...+...++|++|+++++.- ........  ...+..  +          .........+.|+.+.++++ .+.
T Consensus       108 ~~~~~l~~~l~~~~~L~~L~l~~n~l-~~~~~~~l--~~~l~~--~----------~~~~~~~~~~~L~~l~l~~n-~i~  171 (344)
T d2ca6a1         108 TAQEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKI--ARALQE--L----------AVNKKAKNAPPLRSIICGRN-RLE  171 (344)
T ss_dssp             TTHHHHHHHHHHCTTCCEEECCSSCC-HHHHHHHH--HHHHHH--H----------HHHHHHHTCCCCCEEECCSS-CCT
T ss_pred             ccccchhhhhcccccchheecccccc-cccccccc--cccccc--c----------ccccccccCcccceeecccc-ccc
Confidence                 222233456666666665421 10000000  000000  0          00000123566777777663 333


Q ss_pred             cchhhHHHHHHhhhhhccCCccEEEeccCCCCCC------cccccCCCCCccEEEecCCCCceecCCC------CcCCCc
Q 043667          246 SLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVK------LPQSSLSLSSLREIDIYDCSSLVSFPEV------ALPSKL  313 (387)
Q Consensus       246 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~------~~~~~~~~~~L~~L~l~~c~~l~~~~~~------~~~~~L  313 (387)
                      .-....+...+...    +.|++|++.+|. ++.      +...+..+++|+.|+++++ .++.....      ...++|
T Consensus       172 ~~~~~~l~~~l~~~----~~L~~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~L~~~l~~~~~L  245 (344)
T d2ca6a1         172 NGSMKEWAKTFQSH----RLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNL  245 (344)
T ss_dssp             GGGHHHHHHHHHHC----TTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTC
T ss_pred             ccccccccchhhhh----hhhccccccccc-ccccccccchhhhhcchhhhcccccccc-cccccccccccccccccccc
Confidence            32222222233333    677777777653 332      2223456677778887764 34322100      112677


Q ss_pred             eEEEeccCCCCCc-----cccccccCCCCCcceEecccCcccccc-----cCC--CCCCCccEEeecC
Q 043667          314 KKIEIRKCDALKS-----LPEAWMCDTNSSLETLKIERCRSLTYI-----AGV--QLPPSLKRLDIWN  369 (387)
Q Consensus       314 ~~L~l~~c~~l~~-----l~~~~~~~~~~~L~~L~l~~c~~l~~~-----~~~--~~~~~L~~L~l~~  369 (387)
                      ++|++++|. +.+     +...+....++.|++|+++++ +++.-     ...  ...++|++|++++
T Consensus       246 ~~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~l~~  311 (344)
T d2ca6a1         246 RELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNG  311 (344)
T ss_dssp             CEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             hhhhhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCCC-cCChHHHHHHHHHHHccCCCCCEEECCC
Confidence            888887765 433     222222233344888888875 45431     111  1246778888876

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=4.6e-06  Score=64.59  Aligned_cols=81  Identities=15%  Similarity=0.095  Sum_probs=56.9

Q ss_pred             CCCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccC
Q 043667            5 HKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIP   82 (387)
Q Consensus         5 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~   82 (387)
                      +.....++.++......|..+..  +++|++|++.+++.++.++.  +..+++|+.|+++++ .++.++...     +..
T Consensus         7 c~~~~~l~c~~~~~~~~p~~l~~--l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~-----f~~   78 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDSLHHLPG--AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDA-----FHF   78 (156)
T ss_dssp             CSSSSCEECCSSCCCTTTTTSCS--CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTG-----GGS
T ss_pred             cCCCCeEEecCCCCccCcccccC--ccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCccccc-----ccc
Confidence            34455667777777777777665  78888888877666777764  777888888888888 677776543     234


Q ss_pred             CCCcceeeccc
Q 043667           83 FPRLETLRFDA   93 (387)
Q Consensus        83 ~~~L~~L~l~~   93 (387)
                      +++|++|++++
T Consensus        79 l~~L~~L~Ls~   89 (156)
T d2ifga3          79 TPRLSRLNLSF   89 (156)
T ss_dssp             CSCCCEEECCS
T ss_pred             cccccceeccC
Confidence            66777777765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.20  E-value=5.1e-08  Score=79.35  Aligned_cols=124  Identities=16%  Similarity=0.134  Sum_probs=90.4

Q ss_pred             CCccEEEecC-CCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCC-
Q 043667          231 CSLKKLTIDW-CPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVA-  308 (387)
Q Consensus       231 ~~L~~L~l~~-~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-  308 (387)
                      ..++.+++.+ .+.++.++.     ++..+    ++|++|+++++ .+++++ .+..+++|+.|++++| .++.++... 
T Consensus        23 ~~~~~~~l~~~~~~i~~l~~-----sl~~L----~~L~~L~Ls~n-~I~~i~-~l~~l~~L~~L~Ls~N-~i~~i~~~~~   90 (198)
T d1m9la_          23 TEAEKVELHGMIPPIEKMDA-----TLSTL----KACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENLDA   90 (198)
T ss_dssp             TTCSCEECCBCCTTCCCCHH-----HHHHT----TTCCEEECSEE-EESCCC-CHHHHTTCCEEECCEE-EECSCSSHHH
T ss_pred             cccceeeeecccCchhhhhh-----HHhcc----cccceeECccc-CCCCcc-cccCCccccChhhccc-cccccccccc
Confidence            3455666654 234444433     46666    99999999985 588876 4778999999999984 677776322 


Q ss_pred             cCCCceEEEeccCCCCCccccccccCCCCCcceEecccCcccccccC--C-CCCCCccEEeecCCc
Q 043667          309 LPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAG--V-QLPPSLKRLDIWNCD  371 (387)
Q Consensus       309 ~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~--~-~~~~~L~~L~l~~C~  371 (387)
                      ..++|++|+++++ .++.++. +..+++  |++|+++++ ++++++.  . ..+++|++|+++++|
T Consensus        91 ~~~~L~~L~l~~N-~i~~l~~-~~~l~~--L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_          91 VADTLEELWISYN-QIASLSG-IEKLVN--LRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHHHCCEEECSEE-ECCCHHH-HHHHHH--SSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             ccccccccccccc-ccccccc-cccccc--ccccccccc-hhccccccccccCCCccceeecCCCc
Confidence            2268999999985 5887753 555667  999999995 7776653  1 567899999999865

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.04  E-value=7e-07  Score=79.11  Aligned_cols=233  Identities=12%  Similarity=0.054  Sum_probs=121.0

Q ss_pred             cCCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcc--cccccC----------CCCCCccEEEeccCcc-
Q 043667           81 IPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSK--LQGTFP----------EHLPALEMLVIEACKE-  147 (387)
Q Consensus        81 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~--l~~~~~----------~~~~~L~~L~l~~~~~-  147 (387)
                      .....+++|++++.. +.+.....-+..+...++|+.++++++..  .....+          ..+++|+.|+++++.. 
T Consensus        28 ~~~~~l~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  106 (344)
T d2ca6a1          28 LEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  106 (344)
T ss_dssp             HHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             hhCCCCCEEECcCCc-CCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccc
Confidence            456889999998752 22211100002233578999999986532  111111          2368899999998752 


Q ss_pred             ------ccccccCCCCcceEEEcCcccee-----Eecc---------cccCCCCcEEeccCCCCcccccCCCCCCCcccc
Q 043667          148 ------LSVSVSSLPALCKLKIGGCKKVV-----WRSA---------TDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLE  207 (387)
Q Consensus       148 ------l~~~~~~~~~L~~L~i~~~~~~~-----~~~~---------~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~  207 (387)
                            +...+...++|++|+++++....     +...         ....+.|+.+.+++..- ..             
T Consensus       107 ~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i-~~-------------  172 (344)
T d2ca6a1         107 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL-EN-------------  172 (344)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC-TG-------------
T ss_pred             cccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccc-cc-------------
Confidence                  11344567899999998874211     0000         11234455555443210 00             


Q ss_pred             ceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCC-----Cccc
Q 043667          208 ELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLV-----KLPQ  282 (387)
Q Consensus       208 ~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~-----~~~~  282 (387)
                               .....+.. .+...++|++|++++|. +......   ..+.......++|++|+++++. ++     .+..
T Consensus       173 ---------~~~~~l~~-~l~~~~~L~~L~L~~n~-i~~~g~~---~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~L~~  237 (344)
T d2ca6a1         173 ---------GSMKEWAK-TFQSHRLLHTVKMVQNG-IRPEGIE---HLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAI  237 (344)
T ss_dssp             ---------GGHHHHHH-HHHHCTTCCEEECCSSC-CCHHHHH---HHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHH
T ss_pred             ---------cccccccc-hhhhhhhhccccccccc-ccccccc---cchhhhhcchhhhccccccccc-ccccccccccc
Confidence                     00011111 23456778888887753 3321110   0111111223778888887654 32     2333


Q ss_pred             ccCCCCCccEEEecCCCCceecCCC-------C-cCCCceEEEeccCCCCCc-----cccccc-cCCCCCcceEecccC
Q 043667          283 SSLSLSSLREIDIYDCSSLVSFPEV-------A-LPSKLKKIEIRKCDALKS-----LPEAWM-CDTNSSLETLKIERC  347 (387)
Q Consensus       283 ~~~~~~~L~~L~l~~c~~l~~~~~~-------~-~~~~L~~L~l~~c~~l~~-----l~~~~~-~~~~~~L~~L~l~~c  347 (387)
                      .+..+++|+.|++++| .++.....       . ..++|++|+++++. ++.     +...+. ..+.  |++|+++++
T Consensus       238 ~l~~~~~L~~L~Ls~n-~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~--L~~L~l~~N  312 (344)
T d2ca6a1         238 ALKSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPD--LLFLELNGN  312 (344)
T ss_dssp             HGGGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTT--CCEEECTTS
T ss_pred             cccccccchhhhhhcC-ccCchhhHHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCC--CCEEECCCC
Confidence            4567778888888875 34432111       0 11578888888754 543     333322 2345  888888774

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.62  E-value=0.00038  Score=53.98  Aligned_cols=87  Identities=13%  Similarity=0.063  Sum_probs=41.8

Q ss_pred             cCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCC-----CcccccCCCCCccEEEecCCCCcee
Q 043667          229 DICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLV-----KLPQSSLSLSSLREIDIYDCSSLVS  303 (387)
Q Consensus       229 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~-----~~~~~~~~~~~L~~L~l~~c~~l~~  303 (387)
                      ..++|++|+++++..+..-....+...+..-    +.|++|++++|. ++     .+...+...+.|+.|++++| .++.
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n----~~L~~L~Ls~n~-l~~~~~~~la~~L~~n~~L~~L~L~~n-~i~~   86 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNS----KHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESN-FLTP   86 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTC----SCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSS-BCCH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhC----Cccceeeccccc-cchhHHHHHhhhhhhcccccceeeehh-hcch
Confidence            3566777777665444432222222223322    567777776653 32     12222334566667777664 4443


Q ss_pred             cCCC----Cc--CCCceEEEeccC
Q 043667          304 FPEV----AL--PSKLKKIEIRKC  321 (387)
Q Consensus       304 ~~~~----~~--~~~L~~L~l~~c  321 (387)
                      -...    ++  .++|++|++.++
T Consensus        87 ~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          87 ELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHHHHHhCCcCCEEECCCC
Confidence            2111    11  156666666553

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.68  E-value=0.0041  Score=47.81  Aligned_cols=66  Identities=15%  Similarity=0.072  Sum_probs=41.8

Q ss_pred             cccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCC-----cccccCCCCCccEEEecCC
Q 043667          227 LQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVK-----LPQSSLSLSSLREIDIYDC  298 (387)
Q Consensus       227 l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~-----~~~~~~~~~~L~~L~l~~c  298 (387)
                      +...++|++|++++| .+++-....+...+..-    +.|++|++++|. ++.     +...+...++|++|+++++
T Consensus        40 L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n----~~L~~L~L~~n~-i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          40 ACNSKHIEKFSLANT-AISDSEARGLIELIETS----PSLRVLNVESNF-LTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHC----SSCCEEECCSSB-CCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HhhCCccceeecccc-ccchhHHHHHhhhhhhc----ccccceeeehhh-cchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            445678999999886 34432222222233333    789999998874 442     3334667788999999763

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.46  E-value=0.002  Score=49.54  Aligned_cols=110  Identities=8%  Similarity=0.050  Sum_probs=52.7

Q ss_pred             cCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCC-----cccccCCCCCccEEEecCCCCcee
Q 043667          229 DICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVK-----LPQSSLSLSSLREIDIYDCSSLVS  303 (387)
Q Consensus       229 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~-----~~~~~~~~~~L~~L~l~~c~~l~~  303 (387)
                      ..++|++|+++++..+..-....+..++...    +.|++|++++|. ++.     +...+...++++.+++++| .++.
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n----~~L~~L~Ls~n~-l~~~~~~~L~~~l~~~~~l~~l~l~~~-~~~~   88 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTN----TYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESN-FISG   88 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTC----CSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSS-CCCH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcC----CccCeeeccCCc-ccHHHHHHHHHHHhhcccchhhhhccc-cccc
Confidence            4567777777765444433222222233333    677777777653 332     2223344566777777664 2221


Q ss_pred             cC-----CC-CcCCCceEEEeccCC-CCCc-----cccccccCCCCCcceEeccc
Q 043667          304 FP-----EV-ALPSKLKKIEIRKCD-ALKS-----LPEAWMCDTNSSLETLKIER  346 (387)
Q Consensus       304 ~~-----~~-~~~~~L~~L~l~~c~-~l~~-----l~~~~~~~~~~~L~~L~l~~  346 (387)
                      -.     .. ...++|+.+++..+. .+.+     +...+...+.  |++|++..
T Consensus        89 ~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~--L~~L~l~~  141 (166)
T d1io0a_          89 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTT--LLKFGYHF  141 (166)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSS--CCEEECCC
T ss_pred             hhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCC--cCEEeCcC
Confidence            11     00 111566666665432 2322     3333333444  66666654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.001  Score=51.14  Aligned_cols=57  Identities=19%  Similarity=0.139  Sum_probs=31.3

Q ss_pred             CCccEEEeccCCCCCCccc---ccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCC
Q 043667          264 CRLEYLRLRYCKGLVKLPQ---SSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCD  322 (387)
Q Consensus       264 ~~L~~L~l~~c~~l~~~~~---~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~  322 (387)
                      ++|++|+++++ +++.+..   .+..+++|+.|++++ +.+++++.....  .+|+++++.+++
T Consensus        65 ~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~-N~i~~l~~l~~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          65 PELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNS  126 (162)
T ss_dssp             TTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTT-SCCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred             CCCCEeeCCCc-cccCCchhHHHHhhCCccccccccc-CccccchhhhhhhccccceeecCCCC
Confidence            77777777764 3555432   234566667777766 455555432211  345555555543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.59  E-value=0.00088  Score=51.52  Aligned_cols=59  Identities=25%  Similarity=0.239  Sum_probs=39.3

Q ss_pred             CCCccEEEeecCCCCCCCCC----cCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccC
Q 043667           30 FSNLVTLKFEYCGMCPTLPS----VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAML   95 (387)
Q Consensus        30 l~~L~~L~l~~c~~~~~l~~----~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~   95 (387)
                      +++|++|+++++ +++.++.    +..+++|+.|+++++ .++.++.-.     .....+|+++++.+.+
T Consensus        64 ~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~-----~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          64 IPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELD-----KIKGLKLEELWLDGNS  126 (162)
T ss_dssp             CTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHH-----HHTTCCCSSCCCTTST
T ss_pred             CCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccC-ccccchhhh-----hhhccccceeecCCCC
Confidence            778888888885 6666654    345788888888887 666654321     1124567888887654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.58  E-value=0.011  Score=45.26  Aligned_cols=90  Identities=21%  Similarity=0.065  Sum_probs=52.0

Q ss_pred             cccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCC----CCcccccCCCCCccEEEecCCC-Cc
Q 043667          227 LQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGL----VKLPQSSLSLSSLREIDIYDCS-SL  301 (387)
Q Consensus       227 l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l----~~~~~~~~~~~~L~~L~l~~c~-~l  301 (387)
                      +...++|++|++++| .++.-....+...+...    +.++.+++.+|..-    ..+...+...++|+.+++..+. .+
T Consensus        42 l~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~----~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i  116 (166)
T d1io0a_          42 LKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVN----NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPL  116 (166)
T ss_dssp             HTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHC----SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred             HhcCCccCeeeccCC-cccHHHHHHHHHHHhhc----ccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcC
Confidence            345778889999886 44443333222334433    78888888876521    1233455677888887776433 34


Q ss_pred             eecCCCC------cCCCceEEEeccC
Q 043667          302 VSFPEVA------LPSKLKKIEIRKC  321 (387)
Q Consensus       302 ~~~~~~~------~~~~L~~L~l~~c  321 (387)
                      ++-....      ..++|++|++...
T Consensus       117 ~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         117 GNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             CHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             cHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            3321111      1278888888653