Citrus Sinensis ID: 043668

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-----

MAMDFYINAVLTTHLLLILFTGISVALPEYSNPSSQINSNSVLLALLDSHYTELAELVEKALLLQTLEQAVATHNVTIFAPKNEAFERDLLDPEFKRFLLQPANIKSLQNLLLFHIIPRKIAFGSEEWSARHKTLAGDGVDELFPLNLAKVVHPDSITRPDGTIHGISQLMVPRSVQNEFNRRRNLDSIAAVKPEAAPEIDPRVITKKLNKPVFNVKPYSPPVLPISEAIAAGPGQAPASAPAPGGPRDHFDGHIQVKDFIKTLVHYGGYNEMADILVNLTSLASEIGKLVSEGYVLTILAPNDEAMVKLTTDQLSEPGAAEQIMYYHMVAEYQTEESMYNAVVAVEADGSVEFGSGGGNGAAYLFDPDIYTDGRISVQGIDGVLFPVKEGTKNSKKTKAVAKVAAKPARRGKLD

ccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHcccccHHHHHHHHHHccHHHHHcccccccEEEEccccHHHHcccccHHHHHHHcccccHHHHHHHHHccccccccccccccccccccEEEcccccccEEEccEEEEccccccccccEEEEEcccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccHHHHHHcccccccccccHHHHHHHHHHcccccHHHHHHHHcEEccccEEEEccccccccEEEEcccccccccEEEEEccEEEEccccccccccccccccccccccccccccc

ccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHccccEEEEcccHHHHHHccccHHHHHHHcccccHHHHHHHHHHEEccccccccccccccEEEEcccccEEEEEEEcccEEEcccccEccccEEEEEcEEEccccHHHHHHHHccHHHHHccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHccccccHHHHHHHEEccccccHHHHHHHHHHHHccccEEEccccccccEEEEccccEcccEEEEEccccEccccccccccccccccEEEEEcccccccccc

MAMDFYINAVLTTHLLLILFTGIsvalpeysnpssqinsNSVLLALLDSHYTELAELVEKALLLQTLEQAVATHNvtifapkneaferdlldpEFKRFLLQPANIKSLQNLLLFHIiprkiafgseeWSARHKTlagdgvdelfplnlakvvhpdsitrpdgtihgisqlmvprsvqnefnrrrnldsiaavkpeaapeidprvitkklnkpvfnvkpysppvlpiseaiaagpgqapasapapggprdhfdghiQVKDFIKTLVHYGGYNEMADILVNLTSLASEIGKLVSEGYVltilapndeAMVKLTTdqlsepgaaEQIMYYHMVAEYQTEESMYNAVVAVEadgsvefgsgggngaaylfdpdiytdgrisvqgidgvlfpvkegtknskKTKAVAKVAakparrgkld

MAMDFYINAVLTTHLLLILFTGISVALPEYSNPSSQINSNSVLLALLDSHYTELAELVEKALLLQTLEQAVATHNVTIFAPKNEAFERDLLDPEFKRFLLQPANIKSLQNLLLFHIIPRKIAFGSEEWSARHKTLAGDGVDELFPLNLAKVVHPDSITRPDGTIHGISQLMVPRSVQNEFNRRRNLdsiaavkpeaapeidprvitkklnkpvfNVKPYSPPVLPISEAIAAGPGQAPASAPAPGGPRDHFDGHIQVKDFIKTLVHYGGYNEMADILVNLTSLASEIGKLVSEGYVLTILAPNDEAMVKLTTDQLSEPGAAEQIMYYHMVAEYQTEESMYNAVVAVEADGSVEFGSGGGNGAAYLFDPDIYTDGRISVQGIDGVLFpvkegtknskktkavakvaakparrgkld

MAMDFYINAVLTTHLLLILFTGISVALPEYSNPSSQINSNSVLLALLDSHYTelaelvekalllQTLEQAVATHNVTIFAPKNEAFERDLLDPEFKRFLLQPANIKSLQNLLLFHIIPRKIAFGSEEWSARHKTLAGDGVDELFPLNLAKVVHPDSITRPDGTIHGISQLMVPRSVQNEFNRRRNLDSIAAVKPEAAPEIDPRVITKKLNKPVFNVKPYSPPVLPISEaiaagpgqapasapapggpRDHFDGHIQVKDFIKTLVHYGGYNEMADILVNLTSLASEIGKLVSEGYVLTILAPNDEAMVKLTTDQLSEPGAAEQIMYYHMVAEYQTEESMYNAVVAVEADgsvefgsgggngAAYLFDPDIYTDGRISVQGIDGVLFPVKEGTKNSkktkavakvaakpaRRGKLD

***DFYINAVLTTHLLLILFTGISVALPEYSN***QINSNSVLLALLDSHYTELAELVEKALLLQTLEQAVATHNVTIFAPKNEAFERDLLDPEFKRFLLQPANIKSLQNLLLFHIIPRKIAFGSEEWSARHKTLAGDGVDELFPLNLAKVVHPDSITRPDGTIHGISQLMV*******************************VITKKLNKPVFNVKPY*******************************FDGHIQVKDFIKTLVHYGGYNEMADILVNLTSLASEIGKLVSEGYVLTILAPNDEAMVKLTTDQLSEPGAAEQIMYYHMVAEYQTEESMYNAVVAVEADGSVEFGSGGGNGAAYLFDPDIYTDGRISVQGIDGVLFPV***************************

********AVLTTHLLLILFTGISV*****************LLALLDSHYTELAELVEKALLLQTLEQAVATHNVTIFAPKNEAFERDLLDPEFKRFLLQPANIKSLQNLLLFHIIPRKIAFGSEE**A**KTLAGDGVDELFPLNLAKVVHPDSITRPDGTIHGISQLMVPRSVQ**********************I*********************PVLPISEAIAAGPGQAPASAPAPGGPRDHFDGHIQVKDFIKTLVHYGGYNEMADILVNLTSLASEIGKLVSEGYVLTILAPNDEAMVKLTTDQLSEPGAAEQIMYYHMVAEYQTEESM*********DGSVEFGSGGGNGAAYLFDPDIYTDGRISVQGIDGVL***********************A******

MAMDFYINAVLTTHLLLILFTGISVALPEYSNPSSQINSNSVLLALLDSHYTELAELVEKALLLQTLEQAVATHNVTIFAPKNEAFERDLLDPEFKRFLLQPANIKSLQNLLLFHIIPRKIAFGSEEWSARHKTLAGDGVDELFPLNLAKVVHPDSITRPDGTIHGISQLMVPRSVQNEFNRRRNLDSIAAVKPEAAPEIDPRVITKKLNKPVFNVKPYSPPVLPISEAIAA**************PRDHFDGHIQVKDFIKTLVHYGGYNEMADILVNLTSLASEIGKLVSEGYVLTILAPNDEAMVKLTTDQLSEPGAAEQIMYYHMVAEYQTEESMYNAVVAVEADGSVEFGSGGGNGAAYLFDPDIYTDGRISVQGIDGVLFPVKEG************************

*AMDFYINAVLTTHLLLILFTGISVALPEYSNPSSQINSNSVLLALLDSHYTELAELVEKALLLQTLEQAVATHNVTIFAPKNEAFERDLLDPEFKRFLLQPANIKSLQNLLLFHIIPRKIAFGSEEWSARHKTLAGDGVDELFPLNLAKVVHPDSITRPDGTIHGISQLMVPRSVQNEFNRRRNLDSIAAVKPEAAPEIDPRVITKKLNKPVFNVKPYSPPVLPISEAIAAGPGQAPASAPAPGGPRDHFDGHIQVKDFIKTLVHYGGYNEMADILVNLTSLASEIGKLVSEGYVLTILAPNDEAMVKLTTDQLSEPGAAEQIMYYHMVAEYQTEESMYNAVVAVEADGSVEFGSGGGNGAAYLFDPDIYTDGRISVQGIDGVLFPVKEGT******KAVAKVAA*********

iiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		415	2.2.26 [Sep-21-2011]
Q66GR0		458	Fasciclin-like arabinogal	yes	no	0.942	0.853	0.622	1e-132
Q8RWC5		445	Fasciclin-like arabinogal	no	no	0.930	0.867	0.624	1e-130
Q9FT45		436	Fasciclin-like arabinogal	no	no	0.920	0.876	0.644	1e-129
Q93W32		462	Fasciclin-like arabinogal	no	no	0.903	0.811	0.639	1e-128
P74615		180	Uncharacterized protein s	N/A	no	0.354	0.816	0.277	0.0002
Q8CFM6		1431	Stabilin-2 (Fragment) OS=	no	no	0.202	0.058	0.352	0.0008
Q15582		683	Transforming growth facto	yes	no	0.284	0.172	0.305	0.0008

>sp\|Q66GR0\|FLA17_ARATH Fasciclin-like arabinogalactan protein 17 OS=Arabidopsis thaliana GN=FLA17 PE=2 SV=1	Back alignment and function desciption

 Score =  471 bits (1211), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 271/435 (62%), Positives = 315/435 (72%), Gaps = 44/435 (10%)

Query: 14  HLLL---ILFTGISVALPEYSNPSS---QINSNSVLLALLDSHYTELAELVEKALLLQTL 67
           HL L   +L    + AL +  +PSS   QINSNSVL+ALLDS YTELAELVEKALLLQTL
Sbjct: 13  HLFLFFSVLIFSAASALSKNQSPSSGSGQINSNSVLVALLDSRYTELAELVEKALLLQTL 72

Query: 68  EQAVATHNVTIFAPKNEAFERDLLDPEFKRFLLQPANIKSLQNLLLFHIIPRKIAFGSEE 127
           E AV  HN+TIFAP+NEA ERDL DPEFKRFLL+P N+KSLQ LL+FHIIP ++  GS +
Sbjct: 73  EDAVGRHNITIFAPRNEALERDL-DPEFKRFLLEPGNLKSLQTLLMFHIIPNRV--GSNQ 129

Query: 128 WSA------RHKTLAGDGV-----DELFPLNLAKVVHPDSITRPDGTIHGISQLMVPRSV 176
           W +      +H TL  D V          ++LA+++ PD +TRPDG IHGI +L++PRSV
Sbjct: 130 WPSEESGRVKHHTLGNDQVRLSNGQGKKMVDLAEIIRPDDLTRPDGLIHGIERLLIPRSV 189

Query: 177 QNEFNRRRNLDSIAAVKPEAAPEIDPRVITKKLNKPVFNVKPYSPPVLPISEAIAAGPGQ 236
           Q +FNRRR+L SI+AV PE APE+DPR  T +L KP   V   SPP LPI  A+A GP  
Sbjct: 190 QEDFNRRRSLQSISAVLPEGAPEVDPR--TNRLKKPAAPVPAGSPPALPIQSAMAPGPSL 247

Query: 237 APASAPAPGGPRDHFDGHIQVKDFIKTLVHYGGYNEMADILVNLTSLASEIGKLVSEGYV 296
           APA AP PGG + HFDG  QVKDFI TL+HYGGYNEMADILVNLTSLA+E+G+LVSEGYV
Sbjct: 248 APAPAPGPGGKQHHFDGEAQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYV 307

Query: 297 LTILAPNDEAMVKLTTDQLSEPGAAEQIMYYHMVAEYQTEESMYNA-------------- 342
           LT+LAPNDEAM KLTTDQLSEPGA EQI+YYH++ EYQTEESMYN+              
Sbjct: 308 LTVLAPNDEAMAKLTTDQLSEPGAPEQIVYYHIIPEYQTEESMYNSVRRFGKVKFDTLRF 367

Query: 343 ---VVAVEADGSVEFGSGGGNGAAYLFDPDIYTDGRISVQGIDGVLFPVKEGTKNSKKTK 399
              V A EADGSV+FG   G  +AYLFDPDIYTDGRISVQGIDGVLFP +E    S K K
Sbjct: 368 PHKVAAKEADGSVKFGD--GEKSAYLFDPDIYTDGRISVQGIDGVLFPQEEEVVESVK-K 424

Query: 400 AVAKVAAKPARRGKL 414
            V K+     RRGKL
Sbjct: 425 PVKKIVQ--PRRGKL 437

May be a cell surface adhesion protein.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q8RWC5\|FLA16_ARATH Fasciclin-like arabinogalactan protein 16 OS=Arabidopsis thaliana GN=FLA16 PE=2 SV=1	Back alignment and function description

>sp\|Q9FT45\|FLA15_ARATH Fasciclin-like arabinogalactan protein 15 OS=Arabidopsis thaliana GN=FLA15 PE=2 SV=1	Back alignment and function description

>sp\|Q93W32\|FLA18_ARATH Fasciclin-like arabinogalactan protein 18 OS=Arabidopsis thaliana GN=FLA18 PE=2 SV=1	Back alignment and function description

>sp\|P74615\|Y1483_SYNY3 Uncharacterized protein sll1483 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1483 PE=4 SV=1	Back alignment and function description

>sp\|Q8CFM6\|STAB2_RAT Stabilin-2 (Fragment) OS=Rattus norvegicus GN=Stab2 PE=1 SV=1	Back alignment and function description

>sp\|Q15582\|BGH3_HUMAN Transforming growth factor-beta-induced protein ig-h3 OS=Homo sapiens GN=TGFBI PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		415
449442600		466	PREDICTED: fasciclin-like arabinogalacta	0.973	0.866	0.631	1e-137
225439346		466	PREDICTED: fasciclin-like arabinogalacta	0.971	0.864	0.634	1e-136
225439352		466	PREDICTED: fasciclin-like arabinogalacta	0.971	0.864	0.621	1e-132
449521709		465	PREDICTED: fasciclin-like arabinogalacta	0.896	0.8	0.654	1e-132
115349936		460	fasciclin-like protein FLA26 [Triticum a	0.908	0.819	0.620	1e-132
449437504		465	PREDICTED: fasciclin-like arabinogalacta	0.896	0.8	0.654	1e-132
157273662		459	fasciclin-like arabinogalactan protein 1	0.915	0.827	0.643	1e-131
115349934		459	fasciclin-like protein FLA25 [Triticum a	0.906	0.819	0.615	1e-131
242032747		474	hypothetical protein SORBIDRAFT_01g00577	0.891	0.780	0.620	1e-131
115349938		482	fasciclin-like protein FLA27 [Triticum a	0.893	0.769	0.622	1e-130

>gi\|449442600\|ref\|XP_004139069.1\| PREDICTED: fasciclin-like arabinogalactan protein 17-like [Cucumis sativus]	Back alignment and taxonomy information

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 286/453 (63%), Positives = 329/453 (72%), Gaps = 49/453 (10%)

Query: 3   MDFYINAVLTTHLL---LILFTGISVALPEYSNP---------SSQINSNSVLLALLDSH 50
           MDF ++A     ++   L+L   IS A PEYS P         S QINSNSVL+ALLDSH
Sbjct: 1   MDFTLSAPFKLSIIFSFLLLSFRISSASPEYSKPRLSSPSANSSGQINSNSVLVALLDSH 60

Query: 51  YTELAELVEKALLLQTLEQAVATHNVTIFAPKNEAFERDLLDPEFKRFLLQPANIKSLQN 110
           YTELAEL+EKALLLQ LE AV  HN+TIFAP+NEA ERDL DPEFKRFLL+P N+KSLQ 
Sbjct: 61  YTELAELIEKALLLQILEDAVGNHNLTIFAPRNEALERDL-DPEFKRFLLEPRNLKSLQT 119

Query: 111 LLLFHIIPRKIAFGSEEW-----SARHKTLAGDGVDELF------PLNLAKVVHPDSITR 159
           LL FH+IP +I  GS EW     S RH+TL+   +           ++LAKV+ PD+ITR
Sbjct: 120 LLTFHVIPTRI--GSTEWPKHSESTRHQTLSNHVLRLTHHSTGERTVDLAKVIQPDAITR 177

Query: 160 PDGTIHGISQLMVPRSVQNEFNRRRNLDSIAAVKPEAAPEIDPRVITKKLNKPVFNVKPY 219
           PDG IHGI +L++P+SVQ++FNRRRNL +I AVKPE APE+DPR  T +L KP    +P 
Sbjct: 178 PDGVIHGIERLLIPQSVQDDFNRRRNLQAITAVKPEGAPEVDPR--THRLKKPAPPAEPG 235

Query: 220 SPPVLPISEAIAAGPGQAPASAPAPGGPRDHFDGHIQVKDFIKTLVHYGGYNEMADILVN 279
           S P LPI +A+A GP  APA AP PGGP  HF+G  QVKDFI TL+HYGGYNEMADILVN
Sbjct: 236 SAPALPIYDALAPGPSLAPAPAPGPGGPHHHFNGERQVKDFIHTLLHYGGYNEMADILVN 295

Query: 280 LTSLASEIGKLVSEGYVLTILAPNDEAMVKLTTDQLSEPGAAEQIMYYHMVAEYQTEESM 339
           LTSLA+E+G+LVSEGYVLT+LAPNDEAM KLTTDQLSEPGA EQIMYYH++ EYQTEESM
Sbjct: 296 LTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHLIPEYQTEESM 355

Query: 340 YNA-----------------VVAVEADGSVEFGSGGGNGAAYLFDPDIYTDGRISVQGID 382
           YNA                 VVA EADGSV+FG   G G+AYLFDPDIYTDGRISVQGID
Sbjct: 356 YNAVRRFGKIRYDTLRLPHKVVAQEADGSVKFGQ--GEGSAYLFDPDIYTDGRISVQGID 413

Query: 383 GVLFPVKEG-TKNSKKTKAVAKVAAKPARRGKL 414
           GVLFP +E   K S KT    KV  KP RRGKL
Sbjct: 414 GVLFPPEEAEEKLSVKTVQHVKVVTKP-RRGKL 445

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225439346\|ref\|XP_002270321.1\| PREDICTED: fasciclin-like arabinogalactan protein 17 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225439352\|ref\|XP_002270606.1\| PREDICTED: fasciclin-like arabinogalactan protein 17 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449521709\|ref\|XP_004167872.1\| PREDICTED: fasciclin-like arabinogalactan protein 17-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|115349936\|gb\|ABI95416.1\| fasciclin-like protein FLA26 [Triticum aestivum]	Back alignment and taxonomy information

>gi\|449437504\|ref\|XP_004136532.1\| PREDICTED: fasciclin-like arabinogalactan protein 17-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|157273662\|gb\|ABV27485.1\| fasciclin-like arabinogalactan protein 14 [Gossypium hirsutum]	Back alignment and taxonomy information

>gi\|115349934\|gb\|ABI95415.1\| fasciclin-like protein FLA25 [Triticum aestivum]	Back alignment and taxonomy information

>gi\|242032747\|ref\|XP_002463768.1\| hypothetical protein SORBIDRAFT_01g005770 [Sorghum bicolor] gi\|241917622\|gb\|EER90766.1\| hypothetical protein SORBIDRAFT_01g005770 [Sorghum bicolor]	Back alignment and taxonomy information

>gi\|115349938\|gb\|ABI95417.1\| fasciclin-like protein FLA27 [Triticum aestivum]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		415
TAIR\|locus:2039270		445	FLA16 "FASCICLIN-like arabinog	0.951	0.887	0.550	9.2e-107
TAIR\|locus:2164290		458	FLA17 "AT5G06390" [Arabidopsis	0.886	0.803	0.565	1.4e-105
TAIR\|locus:2100564		436	FLA15 "FASCICLIN-like arabinog	0.942	0.896	0.549	5.8e-105
TAIR\|locus:2098338		462	FLA18 "AT3G11700" [Arabidopsis	0.908	0.816	0.559	2e-102
TAIR\|locus:2166379		125	AT5G05650 "AT5G05650" [Arabido	0.171	0.568	0.411	5.4e-09
UNIPROTKB\|P74615		180	sll1483 "Uncharacterized prote	0.224	0.516	0.323	0.00023

TAIR\|locus:2039270 FLA16 "FASCICLIN-like arabinogalactan protein 16 precursor" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1056 (376.8 bits), Expect = 9.2e-107, P = 9.2e-107
 Identities = 233/423 (55%), Positives = 277/423 (65%)

Query:    15 LLLILFTGISVALPEYSNPSSQINSNSVLLALLDSHYTXXXXXXXXXXXXQTLEQAVATH 74
             LLL L T I+ ALP+      QINSNSVL+ALLDSHYT            QTLE+AV  H
Sbjct:    12 LLLFLTTSIATALPDNKPVPGQINSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGKH 71

Query:    75 NVTIFAPKNEAFERDLLDPEFKRFLLQPANIKSLQNLLLFHIIPRKIAFGSEEW---SAR 131
             N+TIFAP+N+A ER+L DP FK FLL+P N+KSLQ+LL+FHI+P++I   S +W   S  
Sbjct:    72 NITIFAPRNDALERNL-DPLFKSFLLEPRNLKSLQSLLMFHILPKRIT--SPQWPSLSHH 128

Query:   132 HKTLAGDG----VD-ELFPLNLAKVVHPDSITRPDGTIHGISQLMVPRSVQNEFNRRRNL 186
             H+TL+ D     VD     ++ A+++ PD + RPDG IHGI +L++PRSVQ +FNRRR+L
Sbjct:   129 HRTLSNDHLHLTVDVNTLKVDSAEIIRPDDVIRPDGIIHGIERLLIPRSVQEDFNRRRSL 188

Query:   187 DSIAAVKPEAAPEIDPRVITKKLNKPVFNVKPYSPPVLPISEXXXXXXXXXXXXXXXXXX 246
              SI+AV PE APE+DPR  T +L KP   V   +PPVLPI +                  
Sbjct:   189 RSISAVIPEGAPEVDPR--THRLKKPSPAVPAGAPPVLPIYDAMSPGPSLAPAPAPGPGG 246

Query:   247 XRDHFDGHIQVKDFIKTLVHYGGYNEMADILVNLTSLASEIGKLVSEGYVLTILAPNDEA 306
              R HF+G  QVKDFI TL+HYGGYNEMADILVNLTSLA+E+G+LVSEGYVLT+LAPNDEA
Sbjct:   247 PRGHFNGDAQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEA 306

Query:   307 MVKLTTDQLSEPGAAEQIMYYHMVAEYQTEESMYNAVVA---VEADXXXXXXXXXXXXA- 362
             M KLTTDQLSEPGA EQIMYYH++ EYQTEESMYNAV     V+ D            A 
Sbjct:   307 MAKLTTDQLSEPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKVKYDSLRFPHKVLAQEAD 366

Query:   363 -----------AYLFDPDIYTDGRISVQGIDGVLFPVKEGTKNSXXXXXXXXXXXXXXRR 411
                        AYLFDPDIYTDGRISVQGIDGVLFP +E                   RR
Sbjct:   367 GSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPKEETPATEIKPAAPVVKKVSKSRR 426

Query:   412 GKL 414
             GKL
Sbjct:   427 GKL 429

GO:0005576 "extracellular region" evidence=ISM

GO:0007155 "cell adhesion" evidence=ISS

TAIR\|locus:2164290 FLA17 "AT5G06390" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2100564 FLA15 "FASCICLIN-like arabinogalactan protein 15 precursor" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2098338 FLA18 "AT3G11700" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2166379 AT5G05650 "AT5G05650" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|P74615 sll1483 "Uncharacterized protein sll1483" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q66GR0	FLA17_ARATH	No assigned EC number	0.6229	0.9421	0.8537	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		415
pfam02469		123	pfam02469, Fasciclin, Fasciclin domain	7e-20
smart00554		97	smart00554, FAS1, Four repeated domains in the Fas	3e-12
smart00554		97	smart00554, FAS1, Four repeated domains in the Fas	1e-08
COG2335		187	COG2335, COG2335, Secreted and surface protein con	2e-07
pfam02469		123	pfam02469, Fasciclin, Fasciclin domain	4e-06

>gnl\|CDD\|217054 pfam02469, Fasciclin, Fasciclin domain	Back alignment and domain information

 Score = 84.6 bits (210), Expect = 7e-20
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 12/130 (9%)

Query: 49  SHYTELAELVEKALLLQTLEQAVATHNVTIFAPKNEAFERDLLDPEFKRFLLQPANIKSL 108
             ++    L++ A L+ TL  +      T+FAP +EAF +  L      FLL+  + + L
Sbjct: 1   PGFSTFVALLKAAGLVDTLNGS--QGPFTVFAPTDEAFAK--LPAGTLNFLLK--DKEQL 54

Query: 109 QNLLLFHIIPRKIAFGSEEWSARHKTLAGDGV-----DELFPLNLAKVVHPDSITRPDGT 163
           +NLL +H++P ++     +      TL G  +          +N A+VV  D I   +G 
Sbjct: 55  KNLLKYHVVPGRLTSSDLKNGGTLATLQGSKLRVNVTGGTVTVNGARVVQSD-IEATNGV 113

Query: 164 IHGISQLMVP 173
           IH I ++++P
Sbjct: 114 IHVIDKVLLP 123

This extracellular domain is found repeated four times in grasshopper fasciclin I as well as in proteins from mammals, sea urchins, plants, yeast and bacteria. Length = 123

>gnl\|CDD\|214719 smart00554, FAS1, Four repeated domains in the Fasciclin I family of proteins, present in many other contexts	Back alignment and domain information

>gnl\|CDD\|214719 smart00554, FAS1, Four repeated domains in the Fasciclin I family of proteins, present in many other contexts	Back alignment and domain information

>gnl\|CDD\|225214 COG2335, COG2335, Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|217054 pfam02469, Fasciclin, Fasciclin domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		415
KOG1437		682	consensus Fasciclin and related adhesion glycoprot	99.93
COG2335		187	Secreted and surface protein containing fasciclin-	99.93
PF02469		128	Fasciclin: Fasciclin domain; InterPro: IPR000782 T	99.84
smart00554		99	FAS1 Four repeated domains in the Fasciclin I fami	99.76
KOG1437		682	consensus Fasciclin and related adhesion glycoprot	99.74
COG2335		187	Secreted and surface protein containing fasciclin-	99.72
smart00554		99	FAS1 Four repeated domains in the Fasciclin I fami	99.49
PF02469		128	Fasciclin: Fasciclin domain; InterPro: IPR000782 T	99.45

>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]	Back alignment and domain information

Probab=99.93  E-value=1.7e-26  Score=246.86  Aligned_cols=348  Identities=40%  Similarity=0.546  Sum_probs=267.0

Q ss_pred             CCCCCCCCCCHHHHHhcCCCcHHHHHHHHHcCcHHHHHh------ccCCCCeEEEEeCchhhhcCCCCHHHHHHhcCccC
Q 043668           31 SNPSSQINSNSVLLALLDSHYTELAELVEKALLLQTLEQ------AVATHNVTIFAPKNEAFERDLLDPEFKRFLLQPAN  104 (415)
Q Consensus        31 ~~~~~~~~~niv~~l~~~~~lS~f~~~L~~agL~~~L~~------~~~~~~~TVFAPtN~AF~~~~L~~~~~~~L~~p~n  104 (415)
                      .++...+..+.+..+.....+......+..+...+.+++      ..+++++|+|+|.|+||.+. +++.+..++..|.+
T Consensus        82 ~~~~~~i~~~~v~pa~lps~~~~~~~~v~~a~t~Q~~~n~~~~~~~~g~~~ftIFa~~neaw~~~-~d~~v~~~le~~~n  160 (682)
T KOG1437|consen   82 QPGTGKIETNAVFPALLPSRNNALAEGVEKALTLQVLENTASKLEAEGNKDFTIFAPSNEAWTNN-LDSRVKSFLESPYN  160 (682)
T ss_pred             CCcceEecccccccccCCchhhhhhhhhcceeEEEecccchhhhhhccCCceEEecccccchhcC-CChhhhhhccccch
Confidence            567777778888888788888888888887766555554      33789999999999999996 78889999988999


Q ss_pred             HHHHHHHHhccccccc-cccchhhhhh------ccccCCCCceeEE----EE------ecceEEEccCceEeCCcEEEEe
Q 043668          105 IKSLQNLLLFHIIPRK-IAFGSEEWSA------RHKTLAGDGVDEL----FP------LNLAKVVHPDSITRPDGTIHGI  167 (415)
Q Consensus       105 ~~~L~~lL~yHIv~g~-~~l~s~~L~~------~~~TL~G~~l~~i----v~------Vn~a~Vv~~D~I~a~NGVIHvI  167 (415)
                      .+.+.+++++|+++.+ .  ..+++.+      .+.++.+..+. .    ..      ++.+.+...+++...+|+||.|
T Consensus       161 ~d~~~~~l~~h~i~q~~v--~~~~~~~~~~~p~~~~~l~~~~~~-~~~~~~~~~~~r~~~~~~~t~~~Di~~~d~~I~~I  237 (682)
T KOG1437|consen  161 LDSLNQLLRSHIINQRLV--SSAQLPNKMIIPKMHRTLGNKELH-YLNGIVTVNYKRLVNNDVITTNYDLLRIDGVIHTI  237 (682)
T ss_pred             HHHHHHHHHhcccchhhc--cchhcccccccccccccCCCceEE-eeccccceeccccccccccccccccccCCCceEee
Confidence            9999999999999999 6  7777765      45666766654 2    12      2344444444477888999999


Q ss_pred             CccccCccchhhhhhccccccccccCCCCCCCCChhhhhccccCccc--CCCCCCCCccc-------------ccccccC
Q 043668          168 SQLMVPRSVQNEFNRRRNLDSIAAVKPEAAPEIDPRVITKKLNKPVF--NVKPYSPPVLP-------------ISEAIAA  232 (415)
Q Consensus       168 D~VLiP~s~~~~~~~~~~l~~~sa~~p~~~~~~d~~~~~~~lk~~~~--~~~~~~~~~l~-------------v~~~~~~  232 (415)
                      +..+.|...++++....+..+++.+.|++++++|+|  +|..++...  ..+.+..++.+             |...+.+
T Consensus       238 ~~~~~~~~~~~d~~~~~~~~~~t~~~~e~a~~~d~r--t~~a~tn~a~~~ip~~~~~~~~~~~~v~~~~~~~~i~~~~~~  315 (682)
T KOG1437|consen  238 GRLIIPRIEQEDFLKYLSGASATVFLPELAPFVDPR--THLAPTNEAFFTIPRGYPPRILGYHLVLGNLKYNHILDNMKL  315 (682)
T ss_pred             eeccchhhhhccchhcccccceeeeccccccccccc--cccccCcchhhcccccCCCcccccccchhhhhhhhhcccccc
Confidence            999999999999999998889999999999999998  777776622  24445555555             7778889


Q ss_pred             CCCCCC----------CCCCCCCCCCCccccchhH-HHHHHH--HHHcCCcchHHHHHHhhhhhhhh-----hcccccCC
Q 043668          233 GPGQAP----------ASAPAPGGPRDHFDGHIQV-KDFIKT--LVHYGGYNEMADILVNLTSLASE-----IGKLVSEG  294 (415)
Q Consensus       233 ~~~~ap----------apaP~~~~~~~~~~~~~~~-~~~~~~--L~~~gg~~~fa~ll~n~t~~~~~-----~~~l~~~~  294 (415)
                      +++.++          +++||++|.+++++|..++ |+++.+  +++.+++....+++.+.++++.+     +.++.++.
T Consensus       316 ~~s~~~~~~r~~~~~~~~a~g~~g~~~~~ng~~~I~kd~i~~~~~lh~id~~l~p~~~~~l~~La~e~~~st~~rlv~el  395 (682)
T KOG1437|consen  316 GPSLAPGTVRLTGEGVAIAPGSSGERYHINGRAIIQKDFIHTNGLLHYIDYVLEPDSLKNLMSLAREDEISTSMRLVAEL  395 (682)
T ss_pred             cccccccceeeccccccccccCCCceEEeecceeEEEeeeccceEEEEcccccCCchHHHHHHHHhcccccHHHHHHHhc
Confidence            999888          8899999999999999888 999999  99999999999988999998888     55666665


Q ss_pred             ceeEEEecCcHHHhcCCccCCCChhh-------HHHHHHHhhcccccchhhcccce-eEEecCCe-EE---EcC-CC---
Q 043668          295 YVLTILAPNDEAMVKLTTDQLSEPGA-------AEQIMYYHMVAEYQTEESMYNAV-VAVEADGS-VE---FGS-GG---  358 (415)
Q Consensus       295 ~~~TvfaPtd~Af~~l~~~~l~~~~~-------~~~il~yH~vp~~~~~~~l~~~~-~~~~~~g~-v~---~~~-g~---  358 (415)
                      +-+|+|+|+|+|+-.+|.+++.++..       +++||+||++|.|+..++++++. .+...+|. +.   ... +.   
T Consensus       396 gll~~L~~n~e~t~~lp~n~~fd~~~~~~~r~l~~qIL~~HII~~~~~~~~~y~~~~~v~t~g~~~l~~fv~r~~~s~~~  475 (682)
T KOG1437|consen  396 GLLTALAPNDEATLLLPTNNLFDDLTPLESRRLAEQILYNHIIPEYLTSSSMYNGQTTVRTLGKNKLLYFVYRHSVSANV  475 (682)
T ss_pred             cceEEEcCCCceEEeeehhhhccCCChhhhHHHHHHHHHHhCcchhhhhhhhhcccceeeccCCeEEEEEEecccccccc
Confidence            55555555555555555544433222       48999999999999999999755 44555552 21   111 10   


Q ss_pred             -----CCCceEEeCCccc-cCCceEEEEecccccC
Q 043668          359 -----GNGAAYLFDPDIY-TDGRISVQGIDGVLFP  387 (415)
Q Consensus       359 -----~~~~~~~~~~~i~-~dg~iaV~~iD~VL~P  387 (415)
                           ++ .+.++++|+. ++|.  ||.||+||.|
T Consensus       476 t~i~~~~-~~~Ii~aDi~~~nGv--vH~id~vl~p  507 (682)
T KOG1437|consen  476 TDILIGN-EACIIEADISVKNGV--VHIIDRVLDP  507 (682)
T ss_pred             eeeeccc-eeeEEecccceecCc--eEEeeEEcCc
Confidence                 12 3678899996 6695  9999999999

>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues	Back alignment and domain information

>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts	Back alignment and domain information

>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]	Back alignment and domain information

>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts	Back alignment and domain information

>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		415
1x3b_A		146	Solution Structure Of The Fas1 Domain Of Human Tran		3e-04

>pdb|1X3B|A Chain A, Solution Structure Of The Fas1 Domain Of Human Transforming Growth Factor-Beta Induced Protein Ig-H3 Length = 146

Back alignment and structure

Iteration: 1

Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 10/102 (9%) Query: 77 TIFAPKNEAFERDLLDPEFKRFLLQPANIKSLQNLLLFHIIPRKIAFGSEEWSARHKTLA 136 T+FAP NEAF R L E R L + K L N+L +HI + G R K+L Sbjct: 44 TVFAPTNEAF-RALPPRERSRLL---GDAKELANILKYHIGDEILVSGGIGALVRLKSLQ 99 Query: 137 GDGVD-----ELFPLNLAKVVHPDSITRPDGTIHGISQLMVP 173 GD ++ + +N V PD I +G +H I+ ++ P Sbjct: 100 GDKLEVSLKNNVVSVNKEPVAEPD-IMATNGVVHVITNVLQP 140

PyMOL of 1x3b

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		415
1w7d_A		137	Fasciclin-like protein; cell adhesion; NMR {Rhodob	1e-13
1w7d_A		137	Fasciclin-like protein; cell adhesion; NMR {Rhodob	2e-04
2vxp_A		132	Transforming growth factor-beta-induced protein IG	6e-11
2vxp_A		132	Transforming growth factor-beta-induced protein IG	9e-04
1o70_A		324	Fasciclin I, FAS I, FCN; cell adhesion, AXON guida	3e-10
1o70_A		324	Fasciclin I, FAS I, FCN; cell adhesion, AXON guida	9e-08
1o70_A		324	Fasciclin I, FAS I, FCN; cell adhesion, AXON guida	9e-04
1nyo_A		163	Immunogenic protein MPT70; seven-stranded beta-bar	8e-10
1nyo_A		163	Immunogenic protein MPT70; seven-stranded beta-bar	2e-04

>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A Length = 137	Back alignment and structure

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 10/135 (7%)

Query: 45  ALLDSHYTELAELVEKALLLQTLEQAVATHNVTIFAPKNEAFERDLLDPEFKRFLLQPAN 104
           A     +T L    E A L+ TL+        T+FAP + AF    L       LL+P N
Sbjct: 9   ATGAGSFTTLLTAAEAAGLVDTLK---GDGPFTVFAPTDAAFAA--LPEGTVEDLLKPEN 63

Query: 105 IKSLQNLLLFHIIPRKIAFGSEEWSARHKTLAGD----GVDELFPLNLAKVVHPDSITRP 160
            + L  +L +H++P ++           +T+ G      ++    +N   +  PD +   
Sbjct: 64  KEKLTEILTYHVVPGEVMSSDLTEGMTAETVEGGALTVTLEGGPKVNGVSISQPD-VDAS 122

Query: 161 DGTIHGISQLMVPRS 175
           +G IH I  +++P +
Sbjct: 123 NGVIHVIDGVLMPGA 137

PyMOL of 1w7d

>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A Length = 137	Back alignment and structure

>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A Length = 132	Back alignment and structure

>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A Length = 132	Back alignment and structure

>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1 Length = 324	Back alignment and structure

>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1 Length = 324	Back alignment and structure

>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1 Length = 324	Back alignment and structure

>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1 Length = 163	Back alignment and structure

>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1 Length = 163	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		415
1o70_A		324	Fasciclin I, FAS I, FCN; cell adhesion, AXON guida	100.0
1w7d_A		137	Fasciclin-like protein; cell adhesion; NMR {Rhodob	99.94
2vxp_A		132	Transforming growth factor-beta-induced protein IG	99.94
1nyo_A		163	Immunogenic protein MPT70; seven-stranded beta-bar	99.93
1o70_A		324	Fasciclin I, FAS I, FCN; cell adhesion, AXON guida	99.8
1w7d_A		137	Fasciclin-like protein; cell adhesion; NMR {Rhodob	99.76
2vxp_A		132	Transforming growth factor-beta-induced protein IG	99.73
1nyo_A		163	Immunogenic protein MPT70; seven-stranded beta-bar	99.7

>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1	Back alignment and structure

Probab=100.00  E-value=1.8e-38  Score=314.57  Aligned_cols=254  Identities=16%  Similarity=0.239  Sum_probs=172.0

Q ss_pred             CCCCHHHHHh------cCCCcHHHHHHHHHcC--cHHHHHhccCCCCeEEEEeCchhhhcCCCCHHHHHHhcCccCHHHH
Q 043668           37 INSNSVLLAL------LDSHYTELAELVEKAL--LLQTLEQAVATHNVTIFAPKNEAFERDLLDPEFKRFLLQPANIKSL  108 (415)
Q Consensus        37 ~~~niv~~l~------~~~~lS~f~~~L~~ag--L~~~L~~~~~~~~~TVFAPtN~AF~~~~L~~~~~~~L~~p~n~~~L  108 (415)
                      .+.||+++|.      .+++||+|.++|+++|  |.+.|+   +.++||||||+|+||++  +..   +.|.  .+++.|
T Consensus         4 ~~~~i~~~L~~~~~~~~~~~~s~~~~~l~~ag~~l~~~L~---~~~~~TvFAPtn~Af~~--~~~---~~l~--~~~~~l   73 (324)
T 1o70_A            4 ADTTVTQFLQSFKENAENGALRKFYEVIMDNGGAVLDDIN---SLTEVTILAPSNEAWNS--SNI---NNVL--RDRNKM   73 (324)
T ss_dssp             ---------------CCHHHHHHHHHHHHHTCSHHHHHHH---TCSSEEEEEECHHHHHH--TCT---HHHH--TCHHHH
T ss_pred             ehhhHHHHHHHHHhhhcCCcHHHHHHHHHHHhHHHHHHHc---CCCCeEEEEEChHhhhc--ccH---hhhh--CCHHHH
Confidence            4578888887      6899999999999999  999999   78999999999999998  432   2233  478899


Q ss_pred             HHHHhccccccccccchhhhhh-------ccccCCCCc-eeE-E--------EEecc----eEEEccCceEeCCcEEEEe
Q 043668          109 QNLLLFHIIPRKIAFGSEEWSA-------RHKTLAGDG-VDE-L--------FPLNL----AKVVHPDSITRPDGTIHGI  167 (415)
Q Consensus       109 ~~lL~yHIv~g~~~l~s~~L~~-------~~~TL~G~~-l~~-i--------v~Vn~----a~Vv~~D~I~a~NGVIHvI  167 (415)
                      +++|+|||+++++  ++++|.+       .++|+.|+. +.+ +        +++|+    ++|+.+| |.++|||||+|
T Consensus        74 ~~iL~yHvv~g~~--~~~~l~~~~~~~~~~~~Tl~g~~~l~~~v~~~~~~~~v~v~~g~~~a~v~~~d-i~~~NGvIhvI  150 (324)
T 1o70_A           74 RQILNMHIIKDRL--NVDKIRQKNANLIAQVPTVNNNTFLYFNVRGEGSDTVITVEGGGVNATVIQAD-VAQTNGYVHII  150 (324)
T ss_dssp             HHHHHHTEESSCC--CHHHHHHHTSSSCCCEEBSSTTCEEEEEEESCGGGCEEEEEETTEEEEEEEEE-EECSSEEEEEE
T ss_pred             HHHHHhcEeCCee--cHHHHhhccCCCceEEEcCCCCceEEEEEeecCCceEEEEcCCceeEEEEecc-ccccCcEEEEE
Confidence            9999999999999  9999865       467888876 331 1        45553    8999998 99999999999


Q ss_pred             CccccCccchhhhhhccccccccccCCCCCCCCChhhhhccccCcccCCCCCCCCcccccccccCCCCCCCCCCCCCCCC
Q 043668          168 SQLMVPRSVQNEFNRRRNLDSIAAVKPEAAPEIDPRVITKKLNKPVFNVKPYSPPVLPISEAIAAGPGQAPASAPAPGGP  247 (415)
Q Consensus       168 D~VLiP~s~~~~~~~~~~l~~~sa~~p~~~~~~d~~~~~~~lk~~~~~~~~~~~~~l~v~~~~~~~~~~apapaP~~~~~  247 (415)
                      |+||.|+..-                                                                      
T Consensus       151 D~VL~pp~~t----------------------------------------------------------------------  160 (324)
T 1o70_A          151 DHVLGVPYTT----------------------------------------------------------------------  160 (324)
T ss_dssp             SSCTTSCCSC----------------------------------------------------------------------
T ss_pred             chhhhhchhh----------------------------------------------------------------------
Confidence            9999997310                                                                      


Q ss_pred             CCccccchhHHHHHHHHHHcCCcchHHHHHHhhhhhhhhhcccccCCceeEEEecCcHHHhcCC----cc---CC-CChh
Q 043668          248 RDHFDGHIQVKDFIKTLVHYGGYNEMADILVNLTSLASEIGKLVSEGYVLTILAPNDEAMVKLT----TD---QL-SEPG  319 (415)
Q Consensus       248 ~~~~~~~~~~~~~~~~L~~~gg~~~fa~ll~n~t~~~~~~~~l~~~~~~~TvfaPtd~Af~~l~----~~---~l-~~~~  319 (415)
                                  +.+.|.+.+.|+.|..++. .+.+.   ..|.+.++++|||||+|+||+++.    .+   .| .+..
T Consensus       161 ------------i~~~l~~~~~fs~~~~~l~-~~gl~---~~L~~~~~~~TvFAPtd~Af~~l~~~~~~~~~~~l~~~~~  224 (324)
T 1o70_A          161 ------------VLGKLESDPMMSDTYKMGK-FSHFN---DQLNNTQRRFTYFVPRDKGWQKTELDYPSAHKKLFMADFS  224 (324)
T ss_dssp             ------------HHHHHHHCGGGHHHHHHTT-TTTTT---GGGGCSSSEEEEEEECHHHHHHHHHHCHHHHHHHTSGGGH
T ss_pred             ------------HHHHhhcCchHHHHHHHHH-hhCHH---HHhCCCCCCeEEEEeChHHHHhhhhhchhHHHHHhccCcH
Confidence                        1122223333444444432 11111   234434568999999999999984    22   23 2333


Q ss_pred             -hHHHHHHHhhccc--ccchhhcccce------eEEecCCeEEEcC---CC---C---CCceEEeCCccc-cCCceEEEE
Q 043668          320 -AAEQIMYYHMVAE--YQTEESMYNAV------VAVEADGSVEFGS---GG---G---NGAAYLFDPDIY-TDGRISVQG  380 (415)
Q Consensus       320 -~~~~il~yH~vp~--~~~~~~l~~~~------~~~~~~g~v~~~~---g~---~---~~~~~~~~~~i~-~dg~iaV~~  380 (415)
                       .++++|+||++|+  +++.++|.+..      ...+-++.+.+..   |+   +   ++.+.++..||. .+|  +||+
T Consensus       225 ~~l~~iL~yHvv~~~~~~~~~~l~~~~~~~~~~~~~Tl~~~l~v~~~~~~~~v~v~~~~~~a~v~~~di~~~NG--vIHv  302 (324)
T 1o70_A          225 YHSKSILERHLAISDKEYTMKDLVKFSQESGSVILPTFRDSLSIRVEEEAGRYVIIWNYKKINVYRPDVECTNG--IIHV  302 (324)
T ss_dssp             HHHHHHHHTTEEEESSCCCHHHHHHHHHHSSSEEEECSSSEEEEEEEEETTEEEEEETTEEEEEEEEEEEETTE--EEEE
T ss_pred             HHHHHHHHhcEeCCcceEcHHHHhhhccCCCeeeeeccCCcEEEEEEecCCEEEEEecCceeEEEEcccccCCC--eEEE
Confidence             7899999999999  88877775311      0111113333321   21   0   235677788986 558  4999


Q ss_pred             ecccccCCCCC
Q 043668          381 IDGVLFPVKEG  391 (415)
Q Consensus       381 iD~VL~P~~~~  391 (415)
                      ||+||+|++..
T Consensus       303 ID~VL~P~~~~  313 (324)
T 1o70_A          303 IDYPLLEEKDV  313 (324)
T ss_dssp             ESSCSCCTTTT
T ss_pred             eceeecCCccc
Confidence            99999998643

PyMOL of 1o70

>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A	Back alignment and structure

>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A	Back alignment and structure

>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1	Back alignment and structure

>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1	Back alignment and structure

>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A	Back alignment and structure

>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A	Back alignment and structure

>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		415
d1o70a2		157	b.118.1.1 (A:468-624) Fasciclin I {Fruit fly (Dros	8e-11
d1o70a2		157	b.118.1.1 (A:468-624) Fasciclin I {Fruit fly (Dros	0.004
d1o70a1		140	b.118.1.1 (A:328-467) Fasciclin I {Fruit fly (Dros	2e-07
d1o70a1		140	b.118.1.1 (A:328-467) Fasciclin I {Fruit fly (Dros	5e-06
d1nyoa_		163	b.118.1.1 (A:) Immunogenic protein MPT70 {Mycobact	2e-07
d1nyoa_		163	b.118.1.1 (A:) Immunogenic protein MPT70 {Mycobact	0.004

>d1o70a2 b.118.1.1 (A:468-624) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 157	Back information, alignment and structure


class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Fasciclin I
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 58.0 bits (139), Expect = 8e-11
 Identities = 17/147 (11%), Positives = 45/147 (30%), Gaps = 22/147 (14%)

Query: 48  DSHYTELAELVEKALLLQTLEQAVATHNVTIFAPKNEAFER-DLLDPEFKRFLLQPANIK 106
           D   ++  ++ + +     L         T F P+++ +++ +L  P   + L       
Sbjct: 10  DPMMSDTYKMGKFSHFNDQLNNT--QRRFTYFVPRDKGWQKTELDYPSAHKKLFMADFSY 67

Query: 107 SLQNLLLFHIIPRKIAFGSEEWSARHKTL------------------AGDGVDELFPLNL 148
             +++L  H+      +  ++     +                           ++    
Sbjct: 68  HSKSILERHLAISDKEYTMKDLVKFSQESGSVILPTFRDSLSIRVEEEAGRYVIIWNYKK 127

Query: 149 AKVVHPDSITRPDGTIHGISQLMVPRS 175
             V  PD +   +G IH I   ++   
Sbjct: 128 INVYRPD-VECTNGIIHVIDYPLLEEK 153

PyMOL of d1o70a2

>d1o70a2 b.118.1.1 (A:468-624) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 157	Back information, alignment and structure

>d1o70a1 b.118.1.1 (A:328-467) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 140	Back information, alignment and structure

>d1o70a1 b.118.1.1 (A:328-467) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 140	Back information, alignment and structure

>d1nyoa_ b.118.1.1 (A:) Immunogenic protein MPT70 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 163	Back information, alignment and structure

>d1nyoa_ b.118.1.1 (A:) Immunogenic protein MPT70 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 163	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		415
d1nyoa_		163	Immunogenic protein MPT70 {Mycobacterium tuberculo	99.93
d1o70a2		157	Fasciclin I {Fruit fly (Drosophila melanogaster) [	99.86
d1o70a1		140	Fasciclin I {Fruit fly (Drosophila melanogaster) [	99.84
d1nyoa_		163	Immunogenic protein MPT70 {Mycobacterium tuberculo	99.64
d1o70a1		140	Fasciclin I {Fruit fly (Drosophila melanogaster) [	99.64
d1o70a2		157	Fasciclin I {Fruit fly (Drosophila melanogaster) [	99.55

>d1nyoa_ b.118.1.1 (A:) Immunogenic protein MPT70 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Immunogenic protein MPT70
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.93  E-value=7.4e-27  Score=209.63  Aligned_cols=132  Identities=22%  Similarity=0.340  Sum_probs=117.6

Q ss_pred             CCCCCCCCCHHHHHhcCCCcHHHHHHHH-----HcCcHHHHHhccCCCCeEEEEeCchhhhcCCCCHHHHHHhcCccCHH
Q 043668           32 NPSSQINSNSVLLALLDSHYTELAELVE-----KALLLQTLEQAVATHNVTIFAPKNEAFERDLLDPEFKRFLLQPANIK  106 (415)
Q Consensus        32 ~~~~~~~~niv~~l~~~~~lS~f~~~L~-----~agL~~~L~~~~~~~~~TVFAPtN~AF~~~~L~~~~~~~L~~p~n~~  106 (415)
                      ..+.....++...+.++|+||+|.++++     ++||.+.|+    .++||||||+|+||++  ++.+..+.|.  .+++
T Consensus        21 ~~~~~~~~~v~~~a~~~p~lstl~~Al~a~~~~~a~L~~~L~----~gpfTvFAPtn~AF~~--l~~~~~~~l~--~~~~   92 (163)
T d1nyoa_          21 SVQGMSQDPVAVAASNNPELTTLTAALSGQLNPQVNLVDTLN----SGQYTVFAPTNAAFSK--LPASTIDELK--TNSS   92 (163)
T ss_dssp             STTHHHHSCHHHHHTTSTTTHHHHHHHHSSSCTTCCCHHHHT----SSSEEECCBCHHHHHH--SCHHHHHHHT--TCSS
T ss_pred             cccccccchHHHHHhcCCchHHHHHHHhhccccccchhHhhc----CCCeEEEEECcHHHHh--cCHHHHHhhh--hhHH
Confidence            3344455788899999999999999998     479999998    4899999999999999  8998888886  4567


Q ss_pred             HHHHHHhccccccccccchhhhhhccccCCCCceeEE------EEecceEEEccCceEeCCcEEEEeCccccCcc
Q 043668          107 SLQNLLLFHIIPRKIAFGSEEWSARHKTLAGDGVDEL------FPLNLAKVVHPDSITRPDGTIHGISQLMVPRS  175 (415)
Q Consensus       107 ~L~~lL~yHIv~g~~~l~s~~L~~~~~TL~G~~l~~i------v~Vn~a~Vv~~D~I~a~NGVIHvID~VLiP~s  175 (415)
                      .|+++|+|||+++++  +.+++...++|++|+.+. +      +++|+++|+..| |.++|||||+||+||+||+
T Consensus        93 ~L~~iL~yHVv~g~~--~~~~l~~~~~Tl~G~~l~-v~~~~~~i~v~~a~Vv~~d-i~a~NGvIHvID~VLlPPa  163 (163)
T d1nyoa_          93 LLTSILTYHVVAGQT--SPANVVGTRQTLQGASVT-VTGQGNSLKVGNADVVCGG-VSTANATVYMIDSVLMPPA  163 (163)
T ss_dssp             HHHHHHHHTEEESCC--CTTTSCEEEECTTSSEEE-EEECSSCEEETTEECSSBC-CCCSSEEEBCBSSCCCCCC
T ss_pred             HHHHhhhhhhhhhhh--hhhhhhhhhhhccCccee-EEecCCEEEEeceEEEECC-eecCCcEEEEECccccCCC
Confidence            899999999999999  999987778899999988 5      788999999998 9999999999999999985

PyMOL of d1nyoa_

>d1o70a2 b.118.1.1 (A:468-624) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1o70a1 b.118.1.1 (A:328-467) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1nyoa_ b.118.1.1 (A:) Immunogenic protein MPT70 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1o70a1 b.118.1.1 (A:328-467) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1o70a2 b.118.1.1 (A:468-624) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure