Citrus Sinensis ID: 043676

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440------
Protein Sequence
LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNEEEDALGSNVITNGKVY
Secondary Structure (PSIPRED)
cccHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHcccccccHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHcHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccccc
Coil and Loop (DISEMBL)
lgsfpalvagvwsddnslqLEATTLSRKllsfdrnppiekviqsgvvprFVEFLMREDYPQLQYEAAWVLINIasgtsentnvvidhGAVPIFVKLlsspsddvREQAVWALGnvagdsprcrdLVLSQGALIPLLAELNEHAKLSMLRNATRTLsnfcrgkpeppfdqvrpalPALAQLvhsndedvLTYACWSLsyladgtndKIQAVIEAGVCPRLvellghpspsvltpalrtvgnivtgddfqtqciinhgavPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAIsnatsggtQEQIKHLVREgcvkplcdlllcsdpeIVTVCLIGLENILKVGEAernmgttigdVNQYAQFVEEAgglekienlqshdnneihEKSVKIFKTYWcgrneeedalgsnvitngkvy
Flexible Loop (DISEMBL)
lgsfpalvagvwsddnslqLEATTLSRkllsfdrnppiekviqsgvVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALgnvagdspRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENlqshdnneihekSVKIFKTYWCGRNeeedalgsnvitngkvy
Low Complexity Region (SEG)
LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHeeiikkeiswiisniTAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNEEEDALGSNVITNGKVY
Disordered region (IsUnstruct)
*****ALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR*********VRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENL******EIHEKSVKIFKTYWCGRN*****************
Disordered Region (DISOPRED)
LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNEEE**************
Disordered Region (DISEMBL)
LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNEEEDALGSNVITNGKVY
Disordered Region (DISPRO)
*GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCG*******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNEEEDALGSNVITNGKVY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	446	2.2.26 [Sep-21-2011]
Q71VM4	526	Importin subunit alpha-1a	yes	no	0.977	0.828	0.754	0.0
Q96321	532	Importin subunit alpha-1	no	no	0.961	0.806	0.745	0.0
Q9SLX0	534	Importin subunit alpha-1b	no	no	0.970	0.810	0.736	0.0
O22478	527	Importin subunit alpha OS	N/A	no	0.961	0.814	0.741	0.0
O04294	531	Importin subunit alpha-2	no	no	0.946	0.794	0.695	1e-177
Q76P29	516	Importin subunit alpha-B	yes	no	0.964	0.833	0.581	1e-140
O35345	536	Importin subunit alpha-7	yes	no	0.961	0.800	0.567	1e-131
Q0V7M0	536	Importin subunit alpha-7	yes	no	0.959	0.798	0.571	1e-130
Q5RBV0	536	Importin subunit alpha-7	yes	no	0.959	0.798	0.568	1e-130
O60684	536	Importin subunit alpha-7	yes	no	0.959	0.798	0.568	1e-130

>sp|Q71VM4|IMA1A_ORYSJ Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/440 (75%), Positives = 383/440 (87%), Gaps = 4/440 (0%)

Query: 1   LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYP 60
           L S PA++ GV+SDDN+LQLEATT  RKLLS +R+PPIE+VIQSGVVPRFV+FL RED+P
Sbjct: 71  LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFP 130

Query: 61  QLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP 120
           QLQ+EAAW L NIASGTSENT VVIDHGAVPIFVKLL S SDDVREQAVWALGNVAGDSP
Sbjct: 131 QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSP 190

Query: 121 RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQL 180
           +CRDLVL+ GAL+PLLA+LNEH KLSMLRNAT TLSNFCRGKP+P F+Q RPALPALA+L
Sbjct: 191 KCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARL 250

Query: 181 VHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN 240
           +HSNDE+VLT ACW+LSYL+DGTNDKIQAVIEAGVCPRLVELL HPSPSVL PALRTVGN
Sbjct: 251 IHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGN 310

Query: 241 IVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGL 300
           IVTGDD QTQCII+H A+P LL +L  N ++ IKKE  W ISNITAGN++QIQAVI+AG+
Sbjct: 311 IVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGI 370

Query: 301 IRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVT 360
           I P+VNLLQ AEFD KKEAAWAISNATSGG+ +QIK+LV EGC+KPLCDLL+C D  IVT
Sbjct: 371 IGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVT 430

Query: 361 VCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKI 420
           VCL GLENILKVGE ++ +    GDVN ++Q ++EA GLEKIENLQSHDNNEI+EK+VKI
Sbjct: 431 VCLEGLENILKVGETDKTLAA--GDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKI 488

Query: 421 FKTYWCGRNEEEDALGSNVI 440
            + YW   +EE+D +G+  +
Sbjct: 489 LEAYWM--DEEDDTMGATTV 506

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q96321|IMA1_ARATH Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/433 (74%), Positives = 377/433 (87%), Gaps = 4/433 (0%)

Query: 1   LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYP 60
           L S   +VAGVWSDD +LQLE+TT  RKLLS +R+PPIE+VI +GVVPRFVEFL +EDYP
Sbjct: 71  LDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPRFVEFLKKEDYP 130

Query: 61  QLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP 120
            +Q+EAAW L NIASGTS++T VVIDH AVPIFV+LL+SPSDDVREQAVWALGNVAGDSP
Sbjct: 131 AIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAVWALGNVAGDSP 190

Query: 121 RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQL 180
           RCRDLVL  GAL+PLL +LNEHAKLSMLRNAT TLSNFCRGKP+P FDQV+PALPAL +L
Sbjct: 191 RCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQVKPALPALERL 250

Query: 181 VHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN 240
           +HS+DE+VLT ACW+LSYL+DGTNDKIQ VI+AGV P+LVELL H SPSVL PALRTVGN
Sbjct: 251 IHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSPSVLIPALRTVGN 310

Query: 241 IVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGL 300
           IVTGDD QTQC+IN GA+P L ++L  NH++ IKKE  W ISNITAGN++QIQ V++A L
Sbjct: 311 IVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNKDQIQTVVEANL 370

Query: 301 IRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVT 360
           I P+V+LLQNAEFD KKEAAWAISNATSGG+ +QIK+LV +GC+KPLCDLL+C DP I+T
Sbjct: 371 ISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVEQGCIKPLCDLLVCPDPRIIT 430

Query: 361 VCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKI 420
           VCL GLENILKVGEAE+N+G T GD+N YAQ +++A GLEKIENLQSHDNNEI+EK+VKI
Sbjct: 431 VCLEGLENILKVGEAEKNLGHT-GDMNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKI 489

Query: 421 FKTYWCGRNEEED 433
            +TYW    EEED
Sbjct: 490 LETYWL---EEED 499

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs (By similarity). Cellular receptor for the nuclear import of the virD2 protein of Agrobacterium.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SLX0|IMA1B_ORYSJ Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/437 (73%), Positives = 377/437 (86%), Gaps = 4/437 (0%)

Query: 1   LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYP 60
           L   PA+V  V SDD+++QLEATT  RKLLS +R+PPIE+VI +GVVPRF+ FL REDYP
Sbjct: 77  LEGLPAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVINTGVVPRFIAFLQREDYP 136

Query: 61  QLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP 120
           QLQ+EAAW L NIASGTS+NT VV++ GAVPIFVKLLSSPS+DVREQAVWALGNVAGDSP
Sbjct: 137 QLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSEDVREQAVWALGNVAGDSP 196

Query: 121 RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQL 180
           +CRDLVL+ G L PLL +LNEHAKLSMLRNAT TLSNFCRGKP+P F+QV+PAL AL +L
Sbjct: 197 KCRDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQPNFEQVKPALSALQRL 256

Query: 181 VHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN 240
           +HS DE+VLT ACW+LSYL+DGTNDKIQAVIE+GV PRLVELL HPS SVL PALRTVGN
Sbjct: 257 IHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVELLMHPSASVLIPALRTVGN 316

Query: 241 IVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGL 300
           IVTGDD QTQC+I+H A+P LL++L +NH++ IKKE  W ISNITAGNREQIQAVI+A +
Sbjct: 317 IVTGDDMQTQCVIDHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNREQIQAVINANI 376

Query: 301 IRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVT 360
           I P+V+LLQ AEFD KKEAAWAISNATSGGT +QIK+LV +GC+KPLCDLL+C DP IVT
Sbjct: 377 IAPLVHLLQTAEFDIKKEAAWAISNATSGGTHDQIKYLVAQGCIKPLCDLLVCPDPRIVT 436

Query: 361 VCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKI 420
           VCL GLENILKVGEAE+N+G   GDVN YAQ +++A GLEKIENLQSHDN EI+EK+VK+
Sbjct: 437 VCLEGLENILKVGEAEKNLGA--GDVNSYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKM 494

Query: 421 FKTYWCGRNEEEDALGS 437
            ++YW    EE+DA+ S
Sbjct: 495 LESYWL--EEEDDAMPS 509

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. In conjunction with importin beta-1, mediates the nuclear envelope docking, and the subsequent translocation into the nucleus of the constitutive morphogenetic 1 (COP1) protein containing bipartite NLS motif.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O22478|IMA_SOLLC Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/433 (74%), Positives = 371/433 (85%), Gaps = 4/433 (0%)

Query: 1   LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYP 60
           L + P L+AGVWSDD+SLQLE TT  RKLLS +RNPPIE+VIQSGVVPRFVEFL R+DYP
Sbjct: 72  LETLPELIAGVWSDDSSLQLECTTQFRKLLSIERNPPIEEVIQSGVVPRFVEFLARDDYP 131

Query: 61  QLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP 120
           QLQ+EAAW L NIASGTSENT VVID+G+VPIF++LLSSPSDDVREQAVWALGN+AGDSP
Sbjct: 132 QLQFEAAWALTNIASGTSENTKVVIDYGSVPIFIRLLSSPSDDVREQAVWALGNIAGDSP 191

Query: 121 RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQL 180
           + RDLVL  GAL+ LLA+ NE AKLSMLRNAT TLSNFCRGKP+P F+Q + ALP L +L
Sbjct: 192 KYRDLVLGHGALVALLAQFNEQAKLSMLRNATWTLSNFCRGKPQPLFEQTKAALPTLGRL 251

Query: 181 VHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN 240
           +HSNDE+VLT ACW+LSYL+DGTNDKIQAVIEAGVC RLVELL H SPSVL PALRTVGN
Sbjct: 252 IHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCSRLVELLLHSSPSVLIPALRTVGN 311

Query: 241 IVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGL 300
           IVTGDD QTQ +I+H A+P L+++L  N+++ IKKE  W ISNITAGNR QIQ VI+AG+
Sbjct: 312 IVTGDDIQTQVMIDHHALPCLVNLLTQNYKKSIKKEACWTISNITAGNRNQIQIVIEAGI 371

Query: 301 IRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVT 360
           I P+V LLQNAEF+ KKEAAWAISNATSGG  +QIK LV +GC+KPLCDLL+C DP IVT
Sbjct: 372 IAPLVYLLQNAEFEIKKEAAWAISNATSGGNHDQIKFLVSQGCIKPLCDLLVCPDPRIVT 431

Query: 361 VCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKI 420
           VCL GLENILK+GEA++++G T G VN YAQ ++EA GLEKIENLQSHDN EI+EK+VKI
Sbjct: 432 VCLEGLENILKIGEADKDLGNTEG-VNVYAQLIDEAEGLEKIENLQSHDNTEIYEKAVKI 490

Query: 421 FKTYWCGRNEEED 433
            +TYW    EEED
Sbjct: 491 LETYWL---EEED 500

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Solanum lycopersicum (taxid: 4081)

>sp|O04294|IMA2_ARATH Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2

 Score =  620 bits (1598), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 294/423 (69%), Positives = 363/423 (85%), Gaps = 1/423 (0%)

Query: 3   SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQL 62
           + PA+VAG+WS+D++ QLEAT L RKLLS ++NPPI +V+QSGVVPR V+FL R+D+P+L
Sbjct: 76  NLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVVPRVVKFLSRDDFPKL 135

Query: 63  QYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRC 122
           Q+EAAW L NIASGTSENTNV+I+ GAVPIF++LLSS S+DVREQAVWALGNVAGDSP+C
Sbjct: 136 QFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQAVWALGNVAGDSPKC 195

Query: 123 RDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH 182
           RDLVLS GA+ PLL++ NE+ KLSMLRNAT TLSNFCRGKP P F+Q +PALP L +LV 
Sbjct: 196 RDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAFEQTQPALPVLERLVQ 255

Query: 183 SNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIV 242
           S DE+VLT ACW+LSYL+D +NDKIQAVIEAGV PRL++LLGH SPSVL PALRT+GNIV
Sbjct: 256 SMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSSPSVLIPALRTIGNIV 315

Query: 243 TGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIR 302
           TGDD QTQ +++  A+P LL++L +N+++ IKKE  W ISNITAGN +QIQAVIDAG+I+
Sbjct: 316 TGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAGNADQIQAVIDAGIIQ 375

Query: 303 PIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVC 362
            +V +LQ+AEF+ KKEAAW ISNATSGGT +QIK +V +GC+KPLCDLL C D ++VTVC
Sbjct: 376 SLVWVLQSAEFEVKKEAAWGISNATSGGTHDQIKFMVSQGCIKPLCDLLTCPDLKVVTVC 435

Query: 363 LIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFK 422
           L  LENIL VGEAE+N+G T G+ N YAQ ++EA GLEKIENLQSHDNN+I++K+VKI +
Sbjct: 436 LEALENILVVGEAEKNLGHT-GEDNLYAQMIDEAEGLEKIENLQSHDNNDIYDKAVKILE 494

Query: 423 TYW 425
           T+W
Sbjct: 495 TFW 497

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q76P29|IMAB_DICDI Importin subunit alpha-B OS=Dictyostelium discoideum GN=DDB_G0272318 PE=3 SV=1

 Score =  498 bits (1281), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 254/437 (58%), Positives = 326/437 (74%), Gaps = 7/437 (1%)

Query: 1   LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYP 60
           L   P+LVA + S++  L L++TT  RKLLS +++PPIE+VI++G+VPR V+FL  +D+P
Sbjct: 66  LEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFLYMQDFP 125

Query: 61  QLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP 120
           QLQ+EAAW L NIASGT E T VVI++GA+ +FV LLSSP DDVREQAVWALGN+AGDS 
Sbjct: 126 QLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGNIAGDSH 185

Query: 121 RCRDLVLSQGALIPLLAELNEHA--KLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALA 178
            CRDLVLS  AL PLL+ L   A  K+SM+RNAT TLSNFCRGKP+PPF+ VR +LP LA
Sbjct: 186 YCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRASLPVLA 245

Query: 179 QLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTV 238
           +L++  DE+VL  ACW+LSYL+DG+N++IQ VI+A VC ++VELLGHP+ +V TPALRT+
Sbjct: 246 KLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQTPALRTI 305

Query: 239 GNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDA 298
           GNIVTGDD QTQ +++  A+ +LL++L  + +  I+KE  W ISNITAG++ QIQ VIDA
Sbjct: 306 GNIVTGDDNQTQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNITAGDKNQIQQVIDA 364

Query: 299 GLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEI 358
            +I  +V LL NAEF+ +KEAAWAISNATS GT +QI  LV +GCVKPLCDLL  SDP I
Sbjct: 365 NIIPSLVYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVSQGCVKPLCDLLKVSDPRI 424

Query: 359 VTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSV 418
           + V L G+ENIL  G+ E      +  VN Y + +E+A GL KI +LQ H N +  EK  
Sbjct: 425 INVALEGIENILVAGKKE----AQVTGVNPYKKIIEDADGLGKIYDLQHHMNKDTFEKVS 480

Query: 419 KIFKTYWCGRNEEEDAL 435
           +I  TY     E+E  L
Sbjct: 481 RIISTYLEDEQEDEGDL 497

Functions in nuclear protein import via a substrate-importin alpha-beta transport complex that passes though the nuclear pore complexes (NPC). Binds specifically and directly to substrates containing either a simple or bipartite NLS motif.

Dictyostelium discoideum (taxid: 44689)

>sp|O35345|IMA7_MOUSE Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 PE=1 SV=2

 Score =  468 bits (1205), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 247/435 (56%), Positives = 315/435 (72%), Gaps = 6/435 (1%)

Query: 7   LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQS-GVVPRFVEFLMREDYPQLQYE 65
           +V  ++SDD+ LQL  T   RKLLS + +PPI++VI + GVV RFVEFL R +   LQ+E
Sbjct: 85  MVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFE 144

Query: 66  AAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDL 125
           AAW L NIASGTS+ T +VI+ GAVPIF++LL+S  +DV+EQAVWALGN+AGDS  CRD 
Sbjct: 145 AAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSLCRDY 204

Query: 126 VLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLVHSN 184
           VL+   L PLL  L +  +L+M RNA   LSN CRGK P P F +V P LP L++L+ S+
Sbjct: 205 VLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSS 264

Query: 185 DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTG 244
           D D+L  ACW+LSYL+DG N+KIQAVI++GVC RLVELL H    V +PALR VGNIVTG
Sbjct: 265 DSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTG 324

Query: 245 DDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPI 304
           DD QTQ I+N  A+P LL +L  + +E I+KE  W ISNITAGNR QIQAVIDA +   +
Sbjct: 325 DDIQTQVILNCSALPCLLHLL-SSSKESIRKEACWTISNITAGNRAQIQAVIDANIFPVL 383

Query: 305 VNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLI 364
           + +LQ AEF T+KEAAWAI+NATSGGT EQI++LV  GC+KPLCDLL   D +IV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 365 GLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTY 424
           GLENIL++GE E     +   VN Y   +EEA GL+KIE LQSH+N EI++K+  + + Y
Sbjct: 444 GLENILRLGEQESKRSGS--GVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHY 501

Query: 425 WCGRNEEEDALGSNV 439
           + G  +++ +L   V
Sbjct: 502 F-GVEDDDSSLAPQV 515

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Mus musculus (taxid: 10090)

>sp|Q0V7M0|IMA7_BOVIN Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE=2 SV=1

 Score =  466 bits (1199), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 249/436 (57%), Positives = 315/436 (72%), Gaps = 8/436 (1%)

Query: 7   LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQS-GVVPRFVEFLMREDYPQLQYE 65
           +V  ++SDD  LQL  T   RKLLS + +PPI++VI + GVV RFVEFL R +   LQ+E
Sbjct: 85  MVEMLFSDDPDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFE 144

Query: 66  AAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDL 125
           AAW L NIASGTS+ T +VI+ GAVPIF++LL+S  +DV+EQAVWALGN+AGDS  CRD 
Sbjct: 145 AAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDY 204

Query: 126 VLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLVHSN 184
           VL+   L PLL  L +  +L+M RNA   LSN CRGK P P F +V P LP L++L+ S+
Sbjct: 205 VLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSS 264

Query: 185 DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTG 244
           D D+L  ACW+LSYL+DG N+KIQAVI++GVC RLVELL H    V +PALR VGNIVTG
Sbjct: 265 DSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDNKVASPALRAVGNIVTG 324

Query: 245 DDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPI 304
           DD QTQ I+N  A+P LL +L  + +E I+KE  W ISNITAGNR QIQAVIDA +   +
Sbjct: 325 DDIQTQVILNCSALPCLLHLL-SSSKESIRKEACWTISNITAGNRAQIQAVIDANIFPVL 383

Query: 305 VNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLI 364
           + +LQ AEF T+KEAAWAI+NATSGGT EQI++LV  GC+KPLCDLL   D +IV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 365 GLENILKVGEAERNMGTTIGD-VNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKT 423
           GLENIL++GE E   G   G  VN Y   +EEA GL+KIE LQSH+N EI++K+  + + 
Sbjct: 444 GLENILRLGEQE---GKRSGSGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 500

Query: 424 YWCGRNEEEDALGSNV 439
           Y+ G  +++ +L   V
Sbjct: 501 YF-GVEDDDSSLAPQV 515

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Bos taurus (taxid: 9913)

>sp|Q5RBV0|IMA7_PONAB Importin subunit alpha-7 OS=Pongo abelii GN=KPNA6 PE=2 SV=1

 Score =  464 bits (1193), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 248/436 (56%), Positives = 315/436 (72%), Gaps = 8/436 (1%)

Query: 7   LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQS-GVVPRFVEFLMREDYPQLQYE 65
           +V  ++SDD+ LQL  T   RKLLS + +PPI++VI +  VV RFVEFL R +   LQ+E
Sbjct: 85  MVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFE 144

Query: 66  AAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDL 125
           AAW L NIASGTS+ T +VI+ GAVPIF++LL+S  +DV+EQAVWALGN+AGDS  CRD 
Sbjct: 145 AAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDY 204

Query: 126 VLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLVHSN 184
           VL+   L PLL  L +  +L+M RNA   LSN CRGK P P F +V P LP L++L+ S+
Sbjct: 205 VLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSS 264

Query: 185 DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTG 244
           D D+L  ACW+LSYL+DG N+KIQAVI++GVC RLVELL H    V +PALR VGNIVTG
Sbjct: 265 DSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTG 324

Query: 245 DDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPI 304
           DD QTQ I+N  A+P LL +L  + +E I+KE  W ISNITAGNR QIQAVIDA +   +
Sbjct: 325 DDIQTQVILNCSALPCLLHLL-SSPKESIRKEACWTISNITAGNRAQIQAVIDANIFPVL 383

Query: 305 VNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLI 364
           + +LQ AEF T+KEAAWAI+NATSGGT EQI++LV  GC+KPLCDLL   D +IV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 365 GLENILKVGEAERNMGTTIGD-VNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKT 423
           GLENIL++GE E   G   G  VN Y   +EEA GL+KIE LQSH+N EI++K+  + + 
Sbjct: 444 GLENILRLGEQE---GKRSGSGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 500

Query: 424 YWCGRNEEEDALGSNV 439
           Y+ G  +++ +L   V
Sbjct: 501 YF-GVEDDDSSLAPQV 515

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Pongo abelii (taxid: 9601)

>sp|O60684|IMA7_HUMAN Importin subunit alpha-7 OS=Homo sapiens GN=KPNA6 PE=1 SV=1

 Score =  464 bits (1193), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 248/436 (56%), Positives = 315/436 (72%), Gaps = 8/436 (1%)

Query: 7   LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQS-GVVPRFVEFLMREDYPQLQYE 65
           +V  ++SDD+ LQL  T   RKLLS + +PPI++VI +  VV RFVEFL R +   LQ+E
Sbjct: 85  MVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFE 144

Query: 66  AAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDL 125
           AAW L NIASGTS+ T +VI+ GAVPIF++LL+S  +DV+EQAVWALGN+AGDS  CRD 
Sbjct: 145 AAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDY 204

Query: 126 VLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLVHSN 184
           VL+   L PLL  L +  +L+M RNA   LSN CRGK P P F +V P LP L++L+ S+
Sbjct: 205 VLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSS 264

Query: 185 DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTG 244
           D D+L  ACW+LSYL+DG N+KIQAVI++GVC RLVELL H    V +PALR VGNIVTG
Sbjct: 265 DSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTG 324

Query: 245 DDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPI 304
           DD QTQ I+N  A+P LL +L  + +E I+KE  W ISNITAGNR QIQAVIDA +   +
Sbjct: 325 DDIQTQVILNCSALPCLLHLL-SSPKESIRKEACWTISNITAGNRAQIQAVIDANIFPVL 383

Query: 305 VNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLI 364
           + +LQ AEF T+KEAAWAI+NATSGGT EQI++LV  GC+KPLCDLL   D +IV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 365 GLENILKVGEAERNMGTTIGD-VNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKT 423
           GLENIL++GE E   G   G  VN Y   +EEA GL+KIE LQSH+N EI++K+  + + 
Sbjct: 444 GLENILRLGEQE---GKRSGSGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 500

Query: 424 YWCGRNEEEDALGSNV 439
           Y+ G  +++ +L   V
Sbjct: 501 YF-GVEDDDSSLAPQV 515

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	446
356564581	530	PREDICTED: importin subunit alpha-1-like	0.961	0.809	0.810	0.0
356556046	531	PREDICTED: importin subunit alpha-1-like	0.964	0.809	0.816	0.0
356529274	531	PREDICTED: importin subunit alpha-1-like	0.964	0.809	0.812	0.0
356521809	530	PREDICTED: LOW QUALITY PROTEIN: importin	0.961	0.809	0.808	0.0
225431871	529	PREDICTED: importin subunit alpha-1 [Vit	0.961	0.810	0.806	0.0
224130302	529	predicted protein [Populus trichocarpa]	0.973	0.820	0.794	0.0
356535026	532	PREDICTED: importin subunit alpha-1-like	0.961	0.806	0.796	0.0
356576835	532	PREDICTED: importin subunit alpha-1-like	0.961	0.806	0.796	0.0
119866037	529	Impa2 [Nicotiana benthamiana]	0.957	0.807	0.801	0.0
13752562	529	importin alpha 2 [Capsicum annuum]	0.957	0.807	0.799	0.0

>gi|356564581|ref|XP_003550530.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/433 (81%), Positives = 393/433 (90%), Gaps = 4/433 (0%)

Query: 1   LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYP 60
           L S PA+VAGVWSDDNS+QLEATT  RKLLS +R+PPIE+VIQ+GVVPRFVEFL+RED+P
Sbjct: 72  LESLPAMVAGVWSDDNSIQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFP 131

Query: 61  QLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP 120
           QLQ+EAAW L NIASGTSENT VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP
Sbjct: 132 QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP 191

Query: 121 RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQL 180
           RCRDLVLSQGAL+PLLA+LNEHAKLSMLRNAT TLSNFCRGKP+PPF+QVRPALPAL +L
Sbjct: 192 RCRDLVLSQGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERL 251

Query: 181 VHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN 240
           V SNDE+VLT ACW+LSYL+DGTNDKIQAVIEAGVC RLV+LL HPSPSVL PALRTVGN
Sbjct: 252 VFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCARLVQLLIHPSPSVLIPALRTVGN 311

Query: 241 IVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGL 300
           IVTGDD QTQCIINHGA+P LL++L +NH++ IKKE  W ISNITAGN+EQIQ VI+AGL
Sbjct: 312 IVTGDDMQTQCIINHGALPCLLNLLTNNHKKSIKKEACWTISNITAGNKEQIQTVIEAGL 371

Query: 301 IRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVT 360
           + P+VNLLQNAEFD KKEAAWAISNATSGG  EQIK+LV +GC+KPLCDLL+C DP IVT
Sbjct: 372 VAPLVNLLQNAEFDIKKEAAWAISNATSGGIHEQIKYLVSQGCIKPLCDLLVCPDPRIVT 431

Query: 361 VCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKI 420
           VCL GLENILKVGEAE+++G T GDVN+YAQ +++A GLEKIENLQSHDNNEI+EK+VKI
Sbjct: 432 VCLEGLENILKVGEAEKSLGNT-GDVNEYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKI 490

Query: 421 FKTYWCGRNEEED 433
            +TYW    EEED
Sbjct: 491 LETYWL---EEED 500

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556046|ref|XP_003546338.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/431 (81%), Positives = 389/431 (90%), Gaps = 1/431 (0%)

Query: 1   LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYP 60
           L S PA+VAGVWSDDNS QLEATT  RKLLS +R+PPIE+VIQ+GVVPRFVEFL+RED+P
Sbjct: 73  LESLPAMVAGVWSDDNSQQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFP 132

Query: 61  QLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP 120
           QLQ+EAAW L NIASGTSENT VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP
Sbjct: 133 QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP 192

Query: 121 RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQL 180
           RCRDLVLS GALIPLLA+LNEHAKLSMLRNAT TLSNFCRGKP+PPF+QVR ALPAL +L
Sbjct: 193 RCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRAALPALERL 252

Query: 181 VHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN 240
           V SNDE+VLT ACW+LSYL+DGTNDKIQAVIEAGVCPRLV+LL HPSPSVL PALRTVGN
Sbjct: 253 VFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVQLLLHPSPSVLIPALRTVGN 312

Query: 241 IVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGL 300
           IVTGDD QTQ IINHGA+P LL +L HNH++ IKKE  W ISNITAGNR+QIQAVI+AGL
Sbjct: 313 IVTGDDMQTQTIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNRDQIQAVIEAGL 372

Query: 301 IRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVT 360
           I P+VNLLQNAEFD KKEAAWAISNATSGGT EQIK+LV +GC+KPLCDLL+C DP IVT
Sbjct: 373 IAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVT 432

Query: 361 VCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKI 420
           VCL GLENILKVGEAE+++G T GDVN YAQ ++EA GLEKIENLQSHDNNEI+EK+VKI
Sbjct: 433 VCLEGLENILKVGEAEKSLGNT-GDVNLYAQMIDEAEGLEKIENLQSHDNNEIYEKAVKI 491

Query: 421 FKTYWCGRNEE 431
            +TYW   ++E
Sbjct: 492 LETYWLEDDDE 502

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529274|ref|XP_003533220.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/431 (81%), Positives = 389/431 (90%), Gaps = 1/431 (0%)

Query: 1   LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYP 60
           L S PA+VAGVWSDDNS QLEATT  RKLLS +R+PPIE+VIQ+GVVPRFVEFL+RED+P
Sbjct: 73  LESLPAMVAGVWSDDNSQQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFP 132

Query: 61  QLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP 120
           QLQ+EAAW L NIASGTSENT VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP
Sbjct: 133 QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP 192

Query: 121 RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQL 180
           +CRDLVLS GALIPLLA+LNEHAKLSMLRNAT TLSNFCRGKP+PPF+QVR ALPAL +L
Sbjct: 193 KCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRAALPALERL 252

Query: 181 VHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN 240
           V SNDE+VLT ACW+LSYL+DGTNDKIQAVIEAGVCPRLV+LL HPSPSVL PALRTVGN
Sbjct: 253 VFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVQLLLHPSPSVLIPALRTVGN 312

Query: 241 IVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGL 300
           IVTGDD QTQ IINHGA+P LL +L HNH++ IKKE  W ISNITAGNR+QIQAV++AGL
Sbjct: 313 IVTGDDMQTQTIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNRDQIQAVVEAGL 372

Query: 301 IRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVT 360
           I P+VNLLQNAEFD KKEAAWAISNATSGGT EQIK+LV +GC+KPLCDLL+C DP IVT
Sbjct: 373 IAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVT 432

Query: 361 VCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKI 420
           VCL GLENILKVGEAE++MG + GDVN YAQ ++EA GLEKIENLQSHDNNEI+EK+VKI
Sbjct: 433 VCLEGLENILKVGEAEKSMGNS-GDVNLYAQMIDEAEGLEKIENLQSHDNNEIYEKAVKI 491

Query: 421 FKTYWCGRNEE 431
            +TYW   ++E
Sbjct: 492 LETYWLEDDDE 502

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521809|ref|XP_003529543.1| PREDICTED: LOW QUALITY PROTEIN: importin subunit alpha-1-like [Glycine max]

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/433 (80%), Positives = 392/433 (90%), Gaps = 4/433 (0%)

Query: 1   LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYP 60
           L S PA+VAGVWS+DNSLQLEATT  RKLLS +R+PPIE+VIQ+GVVPRFVEFL+RED+P
Sbjct: 72  LESLPAMVAGVWSNDNSLQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFP 131

Query: 61  QLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP 120
           QLQ+EAAW L NIASGTSENT VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP
Sbjct: 132 QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP 191

Query: 121 RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQL 180
           RCRDLVLS GAL+PLLA+LNEHAKLSMLRNAT TLSNFCRGKP+PPF+QVRPALPAL +L
Sbjct: 192 RCRDLVLSHGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERL 251

Query: 181 VHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN 240
           V SNDE+VLT ACW+LSYL+DGTNDKIQAVIEAGVCPRL++LL HPSPSVL PALRTVGN
Sbjct: 252 VFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLMQLLMHPSPSVLIPALRTVGN 311

Query: 241 IVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGL 300
           IVTGDD QTQCIINHGA+P LL++L +NH++ IKKE  W ISNITAGN+EQIQ VI+AGL
Sbjct: 312 IVTGDDMQTQCIINHGALPCLLNLLTNNHKKSIKKEACWTISNITAGNKEQIQTVIEAGL 371

Query: 301 IRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVT 360
           + P+VNLLQ+AEFD KKEA+WAISNATSGGT +QIK+LV +GCVKPLCDLL+C DP IVT
Sbjct: 372 VAPLVNLLQSAEFDIKKEASWAISNATSGGTHDQIKYLVSQGCVKPLCDLLVCPDPRIVT 431

Query: 361 VCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKI 420
           VCL GLENILKVGEAE+++G T GDVN YAQ ++EA GLEKIENLQSHDNNEI+EK VKI
Sbjct: 432 VCLEGLENILKVGEAEKSLGNT-GDVNVYAQMIDEAEGLEKIENLQSHDNNEIYEKVVKI 490

Query: 421 FKTYWCGRNEEED 433
            +TYW    EEED
Sbjct: 491 LETYWL---EEED 500

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431871|ref|XP_002275593.1| PREDICTED: importin subunit alpha-1 [Vitis vinifera] gi|296083287|emb|CBI22923.3| unnamed protein product [Vitis vinifera]

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/433 (80%), Positives = 389/433 (89%), Gaps = 4/433 (0%)

Query: 1   LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYP 60
           L S P++VAGVWSD++SLQLEATT  RKLLS +R+PPIE+VIQSGVVPRFVEFL+RED+P
Sbjct: 71  LESLPSMVAGVWSDNSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFP 130

Query: 61  QLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP 120
           QLQ+EAAW L NIASGTSENT VVIDHGAVPIFVKLL SPSDDVREQAVWALGNVAGDSP
Sbjct: 131 QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSP 190

Query: 121 RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQL 180
           RCRDLVL  GALIPLLA+LNEHAKLSMLRNAT TLSNFCRGKP+PPFDQV+PALPAL +L
Sbjct: 191 RCRDLVLGHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALERL 250

Query: 181 VHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN 240
           VHS+DE+VLT ACW+LSYL+DGTNDKIQAVIEAGVCPRLVELL HPSPSVL PALRTVGN
Sbjct: 251 VHSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGN 310

Query: 241 IVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGL 300
           IVTGDD QTQ IINHGA+P LL +L HNH++ IKKE  W ISNITAGN+EQIQAVI+AG+
Sbjct: 311 IVTGDDIQTQSIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVIEAGV 370

Query: 301 IRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVT 360
           I P+V+LLQ AEFD KKEAAWAISNATSGGT EQIK+LV +GC+KPLCDLL+C DP IVT
Sbjct: 371 IAPLVHLLQTAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVT 430

Query: 361 VCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKI 420
           VCL GLENILKVGEAE+ +G + GDVN YAQ +++A GLEKIENLQSHDNNEI+EK+VKI
Sbjct: 431 VCLEGLENILKVGEAEKTLGNS-GDVNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKI 489

Query: 421 FKTYWCGRNEEED 433
            +TYW    EEED
Sbjct: 490 LETYWL---EEED 499

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130302|ref|XP_002328576.1| predicted protein [Populus trichocarpa] gi|222838558|gb|EEE76923.1| predicted protein [Populus trichocarpa]

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/437 (79%), Positives = 391/437 (89%), Gaps = 3/437 (0%)

Query: 1   LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYP 60
           L S P++V+GVWSDD++LQLEATT  RKLLS +R+PPIE+VIQ+GVVPRFVE L+RED+P
Sbjct: 72  LESLPSMVSGVWSDDSNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVELLVREDFP 131

Query: 61  QLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP 120
           QLQ+EAAW L NIASGTSENT VVIDHGAVPIFVKLL SPSDDVREQAVWALGNVAGDSP
Sbjct: 132 QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSP 191

Query: 121 RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQL 180
           +CRDLVLS GALIPLLA+LNEHAKLSMLRNAT TLSNFCRGKP+P F++VRPALPAL +L
Sbjct: 192 KCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPLFEKVRPALPALERL 251

Query: 181 VHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN 240
           VHS DE+VLT ACW+LSYL+DGTNDKIQAVIEAGVCPRLVELL HPSPSVL PALRTVGN
Sbjct: 252 VHSTDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLVPALRTVGN 311

Query: 241 IVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGL 300
           IVTGDD QTQCIIN GA+P LL +L HNH++ IKKE  W ISNITAGN+EQIQAVI+AGL
Sbjct: 312 IVTGDDMQTQCIINTGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVIEAGL 371

Query: 301 IRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVT 360
           I P+VNLLQNAEFD KKEAAWA+SNATSGGT EQIK LV +GC+KPLCDLL+C DP IVT
Sbjct: 372 IGPLVNLLQNAEFDIKKEAAWAVSNATSGGTHEQIKFLVSQGCIKPLCDLLVCPDPRIVT 431

Query: 361 VCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKI 420
           VCL GLENILKVGEAE+N+G + GDVN YAQ +++A GLEKIENLQSHDNNEI+EK+VKI
Sbjct: 432 VCLEGLENILKVGEAEKNLGNS-GDVNFYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKI 490

Query: 421 FKTYWCGRNEEEDALGS 437
            +TYW    E+++AL S
Sbjct: 491 LETYWL--EEDDEALPS 505

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535026|ref|XP_003536050.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/433 (79%), Positives = 388/433 (89%), Gaps = 4/433 (0%)

Query: 1   LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYP 60
           L   P++V GVW+DDN+LQLEATT  RKLLS +R+PPIE+VIQ+GVV RFVEFLMRED+P
Sbjct: 73  LEHLPSMVTGVWTDDNNLQLEATTQFRKLLSIERSPPIEEVIQTGVVSRFVEFLMREDFP 132

Query: 61  QLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP 120
           QLQ+EAAW L NIASGTSENT VVIDHGAVPIFVKLL+SPSDDVREQAVWALGNVAGDSP
Sbjct: 133 QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP 192

Query: 121 RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQL 180
           RCRDLVLS GAL+PLLA+LNEHAKLSMLRNAT TLSNFCRGKP+PPFDQV+PALPALA+L
Sbjct: 193 RCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALARL 252

Query: 181 VHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN 240
           +HSNDE+VLT ACW+LSYL+DGTNDKIQAVIEAGVCPRLVELL HPSPSVL PALRTVGN
Sbjct: 253 IHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGN 312

Query: 241 IVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGL 300
           IVTGDD QTQ IINH A+P LL++L +N+++ IKKE  W ISNITAGN++QIQAVI+A L
Sbjct: 313 IVTGDDMQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNKQQIQAVIEANL 372

Query: 301 IRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVT 360
           I P+VNLLQNAEFD KKEAAWAISNATSGG+ EQIK LV +GC+KPLCDLL+C DP IVT
Sbjct: 373 IAPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKFLVSQGCIKPLCDLLICPDPRIVT 432

Query: 361 VCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKI 420
           VCL GLENILKVGEA++N+G T GDVN YAQ ++EA GLEKIENLQSHDN EI+EK+VKI
Sbjct: 433 VCLEGLENILKVGEADKNIGNT-GDVNLYAQMIDEAEGLEKIENLQSHDNTEIYEKAVKI 491

Query: 421 FKTYWCGRNEEED 433
            +TYW    EEED
Sbjct: 492 LETYWL---EEED 501

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576835|ref|XP_003556535.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/433 (79%), Positives = 388/433 (89%), Gaps = 4/433 (0%)

Query: 1   LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYP 60
           L   P++V GVW+DDN+LQLEATT  RKLLS +R+PPIE+VIQ+GVV RFVEFLMRED+P
Sbjct: 73  LEHLPSMVTGVWTDDNNLQLEATTQFRKLLSIERSPPIEEVIQTGVVSRFVEFLMREDFP 132

Query: 61  QLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP 120
           QLQ+EAAW L NIASGTSENT VVIDHGAVPIFVKLL+SPSDDVREQAVWALGNVAGDSP
Sbjct: 133 QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP 192

Query: 121 RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQL 180
           RCRDLVLS GAL+PLLA+LNEHAKLSMLRNAT TLSNFCRGKP+PPFDQV+PALPALA+L
Sbjct: 193 RCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALARL 252

Query: 181 VHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN 240
           +HSNDE+VLT ACW+LSYL+DGTNDKIQAVIEAGVCPRLVELL HPSPSVL PALRTVGN
Sbjct: 253 IHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGN 312

Query: 241 IVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGL 300
           IVTGDD QTQ IINH A+P LL++L +N+++ IKKE  W ISNITAGN++QIQAVI+A L
Sbjct: 313 IVTGDDMQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNKQQIQAVIEANL 372

Query: 301 IRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVT 360
           I P+VNLLQNAEFD KKEAAWAISNATSGG+ EQIK LV +GC+KPLCDLL+C DP IVT
Sbjct: 373 IAPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKFLVSQGCIKPLCDLLICPDPRIVT 432

Query: 361 VCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKI 420
           VCL GLENILKVGEA++N+G T GDVN YAQ ++EA GLEKIENLQSHDN EI+EK+VKI
Sbjct: 433 VCLEGLENILKVGEADKNIGNT-GDVNLYAQMIDEAEGLEKIENLQSHDNTEIYEKAVKI 491

Query: 421 FKTYWCGRNEEED 433
            +TYW    EEED
Sbjct: 492 LETYWL---EEED 501

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|119866037|gb|ABM05488.1| Impa2 [Nicotiana benthamiana]

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/433 (80%), Positives = 381/433 (87%), Gaps = 6/433 (1%)

Query: 1   LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYP 60
           L S P++VAGVWS+DN+LQLEATT  RKLLS +R+PPIE+VIQSGVVPRFVEFLMRED+P
Sbjct: 73  LESLPSMVAGVWSNDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDFP 132

Query: 61  QLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP 120
           QLQ+EAAW L NIASGTS+NT VVIDHGAVPIFVKLL SPSDDVREQAVWALGNVAGDSP
Sbjct: 133 QLQFEAAWALTNIASGTSDNTRVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSP 192

Query: 121 RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQL 180
           RCRDLVLS GALIPLLA+LNEH KLSMLRNAT TLSNFCRGKP+PPF+QVRPAL AL +L
Sbjct: 193 RCRDLVLSNGALIPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPPFEQVRPALSALQRL 252

Query: 181 VHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN 240
           VHSNDE+VLT ACW+LSYL+DGTNDKIQAVIEAGVCPRLVELL HPSPSVL PALRTVGN
Sbjct: 253 VHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLMHPSPSVLIPALRTVGN 312

Query: 241 IVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGL 300
           IVTGDD QTQCII HGA+  LL +L HNH++ IKKE  W ISNITAGN+EQIQAVI+AGL
Sbjct: 313 IVTGDDLQTQCIIEHGALTCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVIEAGL 372

Query: 301 IRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVT 360
           I P+VNLLQ AEFD KKEAAWAISNATSGGT EQIK LV +GC+KPLCDLL+C DP IVT
Sbjct: 373 IAPLVNLLQTAEFDIKKEAAWAISNATSGGTHEQIKFLVSQGCIKPLCDLLVCPDPRIVT 432

Query: 361 VCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKI 420
           VCL GLENILKVGEAE+      G +N YAQ  ++A GLEKIENLQSHDNNEI+EK+VKI
Sbjct: 433 VCLEGLENILKVGEAEK---ANTGGINYYAQLTDDAEGLEKIENLQSHDNNEIYEKAVKI 489

Query: 421 FKTYWCGRNEEED 433
            +TYW    EEED
Sbjct: 490 LETYWL---EEED 499

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13752562|gb|AAK38727.1|AF369707_1 importin alpha 2 [Capsicum annuum]

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/433 (79%), Positives = 379/433 (87%), Gaps = 6/433 (1%)

Query: 1   LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYP 60
           L S P++VAGVWS DN+LQLEA T  RKLLS +R+PPIE+VIQSGVVPRFVEFL+RED+P
Sbjct: 73  LASLPSMVAGVWSTDNNLQLEANTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLLREDFP 132

Query: 61  QLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP 120
           QLQ+EAAW L NIASGTSENT VVIDHGAVPIFVKLL SPSDDVREQAVWALGNVAGDSP
Sbjct: 133 QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSP 192

Query: 121 RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQL 180
           RCRDLVLS GALIPLLA+LNEHAKLSMLRNAT TLSNFCRGKP+PPF+QVRPAL AL +L
Sbjct: 193 RCRDLVLSNGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALSALQRL 252

Query: 181 VHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN 240
           VHS DE+VLT ACW+LSYL+DGTNDKIQAVIEAGVCPRLVELL HPSPSVL PALRTVGN
Sbjct: 253 VHSTDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLVHPSPSVLIPALRTVGN 312

Query: 241 IVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGL 300
           IVTGDD QTQCII HGA+P LL +L HNH++ IKKE  W ISNITAGN+EQIQAVI AGL
Sbjct: 313 IVTGDDLQTQCIIEHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVIAAGL 372

Query: 301 IRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVT 360
           I P+VNLLQ+AEFD KKEAAWAISNATSGGT EQIK LV + C+KPLCDLL+C DP IVT
Sbjct: 373 ISPLVNLLQSAEFDIKKEAAWAISNATSGGTHEQIKFLVSQNCIKPLCDLLVCPDPRIVT 432

Query: 361 VCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKI 420
           VCL GLENILKVGEAE+      G +N YAQ  ++A GLEKIENLQSHDNNEI+EK+VKI
Sbjct: 433 VCLEGLENILKVGEAEK---ANTGGINYYAQLTDDAEGLEKIENLQSHDNNEIYEKAVKI 489

Query: 421 FKTYWCGRNEEED 433
            +TYW    EEED
Sbjct: 490 LETYWL---EEED 499

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	446
TAIR|locus:505006475	535	IMPA-2 "importin alpha isoform	0.961	0.801	0.757	7.7e-174
TAIR|locus:2083313	532	IMPA-1 "importin alpha isoform	0.961	0.806	0.725	2e-168
TAIR|locus:2195351	538	IMPA-4 "AT1G09270" [Arabidopsi	0.966	0.801	0.694	2.8e-160
TAIR|locus:2132238	531	MOS6 "MODIFIER OF SNC1, 6" [Ar	0.961	0.807	0.672	3.8e-156
TAIR|locus:2196140	539	IMPA-6 "importin alpha isoform	0.988	0.818	0.643	3.3e-150
TAIR|locus:2155929	519	IMPA-5 "importin alpha isoform	0.948	0.815	0.615	2e-134
ASPGD|ASPL0000045550	553	kapA [Emericella nidulans (tax	0.957	0.772	0.593	4e-129
TAIR|locus:2078122	528	IMPA-7 "importin alpha isoform	0.957	0.808	0.594	6.6e-129
UNIPROTKB|G4MZS0	551	MGG_15072 "Importin subunit al	0.957	0.774	0.586	2.6e-125
DICTYBASE|DDB_G0272318	516	DDB_G0272318 "putative importi	0.955	0.825	0.565	1.3e-121

TAIR|locus:505006475 IMPA-2 "importin alpha isoform 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1689 (599.6 bits), Expect = 7.7e-174, P = 7.7e-174
 Identities = 328/433 (75%), Positives = 370/433 (85%)

Query:     1 LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYP 60
             L S PA+V GVWSDD SLQLEATT  RKLLS +R+PPIE+VI +GVVPRFVEFL REDYP
Sbjct:    76 LESLPAMVGGVWSDDRSLQLEATTQFRKLLSIERSPPIEEVIDAGVVPRFVEFLTREDYP 135

Query:    61 QLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP 120
             QLQ+EAAW L NIASGTSENT VVI+HGAVPIFV+LL+S SDDVREQAVWALGNVAGDSP
Sbjct:   136 QLQFEAAWALTNIASGTSENTKVVIEHGAVPIFVQLLASQSDDVREQAVWALGNVAGDSP 195

Query:   121 RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQL 180
             RCRDLVL QGALIPLL++LNEHAKLSMLRNAT TLSNFCRGKP+PPFDQVRPALPAL +L
Sbjct:   196 RCRDLVLGQGALIPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALERL 255

Query:   181 VHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN 240
             +HS DE+VLT ACW+LSYL+DGTNDKIQ+VIEAGV PRLVELL H SPSVL PALR++GN
Sbjct:   256 IHSTDEEVLTDACWALSYLSDGTNDKIQSVIEAGVVPRLVELLQHQSPSVLIPALRSIGN 315

Query:   241 IVTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGL 300
             IVTGDD QTQC+I+HGA+  LL +L HNH               TAGNR+QIQAV +AGL
Sbjct:   316 IVTGDDLQTQCVISHGALLSLLSLLTHNHKKSIKKEACWTISNITAGNRDQIQAVCEAGL 375

Query:   301 IRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVT 360
             I P+VNLLQNAEFD KKEAAWAISNATSGG+ +QIK++V +G VKPLCDLL+C DP I+T
Sbjct:   376 ICPLVNLLQNAEFDIKKEAAWAISNATSGGSPDQIKYMVEQGVVKPLCDLLVCPDPRIIT 435

Query:   361 VCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKI 420
             VCL GLENILKVGEAE+  G T GDVN YAQ +++A GLEKIENLQSHDN+EI+EK+VKI
Sbjct:   436 VCLEGLENILKVGEAEKVTGNT-GDVNFYAQLIDDAEGLEKIENLQSHDNSEIYEKAVKI 494

Query:   421 FKTYWCGRNEEED 433
              +TYW    EEED
Sbjct:   495 LETYWL---EEED 504

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA;ISS

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2083313 IMPA-1 "importin alpha isoform 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1638 (581.7 bits), Expect = 2.0e-168, P = 2.0e-168
 Identities = 314/433 (72%), Positives = 366/433 (84%)

Query:     1 LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYP 60
             L S   +VAGVWSDD +LQLE+TT  RKLLS +R+PPIE+VI +GVVPRFVEFL +EDYP
Sbjct:    71 LDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPRFVEFLKKEDYP 130

Query:    61 QLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP 120
              +Q+EAAW L NIASGTS++T VVIDH AVPIFV+LL+SPSDDVREQAVWALGNVAGDSP
Sbjct:   131 AIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAVWALGNVAGDSP 190

Query:   121 RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQL 180
             RCRDLVL  GAL+PLL +LNEHAKLSMLRNAT TLSNFCRGKP+P FDQV+PALPAL +L
Sbjct:   191 RCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQVKPALPALERL 250

Query:   181 VHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN 240
             +HS+DE+VLT ACW+LSYL+DGTNDKIQ VI+AGV P+LVELL H SPSVL PALRTVGN
Sbjct:   251 IHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSPSVLIPALRTVGN 310

Query:   241 IVTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGL 300
             IVTGDD QTQC+IN GA+P L ++L  NH               TAGN++QIQ V++A L
Sbjct:   311 IVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNKDQIQTVVEANL 370

Query:   301 IRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVT 360
             I P+V+LLQNAEFD KKEAAWAISNATSGG+ +QIK+LV +GC+KPLCDLL+C DP I+T
Sbjct:   371 ISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVEQGCIKPLCDLLVCPDPRIIT 430

Query:   361 VCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKI 420
             VCL GLENILKVGEAE+N+G T GD+N YAQ +++A GLEKIENLQSHDNNEI+EK+VKI
Sbjct:   431 VCLEGLENILKVGEAEKNLGHT-GDMNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKI 489

Query:   421 FKTYWCGRNEEED 433
              +TYW    EEED
Sbjct:   490 LETYWL---EEED 499

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2195351 IMPA-4 "AT1G09270" [Arabidopsis thaliana (taxid:3702)]

 Score = 1561 (554.6 bits), Expect = 2.8e-160, P = 2.8e-160
 Identities = 300/432 (69%), Positives = 355/432 (82%)

Query:     1 LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYP 60
             L   P +V GV+SDD   QLEATT  RKLLS +R+PPI++VI++GV+PRFVEFL R D+P
Sbjct:    78 LEGIPMMVQGVYSDDPQAQLEATTQFRKLLSIERSPPIDEVIKAGVIPRFVEFLGRHDHP 137

Query:    61 QLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP 120
             QLQ+EAAW L N+ASGTS++T VVI+ GAVPIFVKLL+S SDDVREQAVWALGNVAGDSP
Sbjct:   138 QLQFEAAWALTNVASGTSDHTRVVIEQGAVPIFVKLLTSASDDVREQAVWALGNVAGDSP 197

Query:   121 RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQL 180
              CR+LVL+ GAL PLLA+LNE++KLSMLRNAT TLSNFCRGKP  PF+QV+PALP L QL
Sbjct:   198 NCRNLVLNYGALEPLLAQLNENSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILRQL 257

Query:   181 VHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN 240
             ++ NDE+VLT ACW+LSYL+DG NDKIQAVIEAGVCPRLVELLGH SP+VL PALRTVGN
Sbjct:   258 IYLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLGHQSPTVLIPALRTVGN 317

Query:   241 IVTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGL 300
             IVTGDD QTQ II  G +P+L ++L  NH               TAGN+ QI+AV+ AG+
Sbjct:   318 IVTGDDSQTQFIIESGVLPHLYNLLTQNHKKSIKKEACWTISNITAGNKLQIEAVVGAGI 377

Query:   301 IRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVT 360
             I P+V+LLQNAEFD KKEAAWAISNATSGG+ EQI++LV +GC+KPLCDLL+C DP IVT
Sbjct:   378 ILPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIQYLVTQGCIKPLCDLLICPDPRIVT 437

Query:   361 VCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKI 420
             VCL GLENILKVGEA++ MG   G VN YAQ +EE+ GL+K+ENLQSHDNNEI+EK+VKI
Sbjct:   438 VCLEGLENILKVGEADKEMGLNSG-VNLYAQIIEESDGLDKVENLQSHDNNEIYEKAVKI 496

Query:   421 FKTYWCGRNEEE 432
              + YW    EE+
Sbjct:   497 LERYWAEEEEEQ 508

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS;RCA

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0030581 "symbiont intracellular protein transport in host" evidence=IPI

GO:0080034 "host response to induction by symbiont of tumor, nodule or growth in host" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2132238 MOS6 "MODIFIER OF SNC1, 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1522 (540.8 bits), Expect = 3.8e-156, P = 3.8e-156
 Identities = 289/430 (67%), Positives = 356/430 (82%)

Query:     3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQL 62
             + PA+VAG+WS+D++ QLEAT L RKLLS ++NPPI +V+QSGVVPR V+FL R+D+P+L
Sbjct:    76 NLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVVPRVVKFLSRDDFPKL 135

Query:    63 QYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRC 122
             Q+EAAW L NIASGTSENTNV+I+ GAVPIF++LLSS S+DVREQAVWALGNVAGDSP+C
Sbjct:   136 QFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQAVWALGNVAGDSPKC 195

Query:   123 RDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH 182
             RDLVLS GA+ PLL++ NE+ KLSMLRNAT TLSNFCRGKP P F+Q +PALP L +LV 
Sbjct:   196 RDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAFEQTQPALPVLERLVQ 255

Query:   183 SNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIV 242
             S DE+VLT ACW+LSYL+D +NDKIQAVIEAGV PRL++LLGH SPSVL PALRT+GNIV
Sbjct:   256 SMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSSPSVLIPALRTIGNIV 315

Query:   243 TGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLIR 302
             TGDD QTQ +++  A+P LL++L +N+               TAGN +QIQAVIDAG+I+
Sbjct:   316 TGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAGNADQIQAVIDAGIIQ 375

Query:   303 PIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVC 362
              +V +LQ+AEF+ KKEAAW ISNATSGGT +QIK +V +GC+KPLCDLL C D ++VTVC
Sbjct:   376 SLVWVLQSAEFEVKKEAAWGISNATSGGTHDQIKFMVSQGCIKPLCDLLTCPDLKVVTVC 435

Query:   363 LIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFK 422
             L  LENIL VGEAE+N+G T G+ N YAQ ++EA GLEKIENLQSHDNN+I++K+VKI +
Sbjct:   436 LEALENILVVGEAEKNLGHT-GEDNLYAQMIDEAEGLEKIENLQSHDNNDIYDKAVKILE 494

Query:   423 TYWCGRNEEE 432
             T+W   NEEE
Sbjct:   495 TFWTEDNEEE 504

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0006952 "defense response" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2196140 IMPA-6 "importin alpha isoform 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1466 (521.1 bits), Expect = 3.3e-150, P = 3.3e-150
 Identities = 285/443 (64%), Positives = 348/443 (78%)

Query:     1 LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYP 60
             L +   ++AGV S+D  LQLEAT   R+LLS +RNPPI +V+QSGVVP  V+FL R+D+ 
Sbjct:    75 LENIQQMIAGVMSEDRDLQLEATASFRRLLSIERNPPINEVVQSGVVPHIVQFLSRDDFT 134

Query:    61 QLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP 120
             QLQ+EAAW L NIASGTSENT V+ID GAVP+FVKLLSS S++VREQAVWALGNVAGDSP
Sbjct:   135 QLQFEAAWALTNIASGTSENTRVIIDSGAVPLFVKLLSSASEEVREQAVWALGNVAGDSP 194

Query:   121 RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQ-VRPALPALAQ 179
             +CRD VLS  A++ LLA+ +EH+KLSMLRNAT TLSNFCRGKP+P F+Q  + ALPAL +
Sbjct:   195 KCRDHVLSCEAMMSLLAQFHEHSKLSMLRNATWTLSNFCRGKPQPAFEQQTKAALPALER 254

Query:   180 LVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVG 239
             L+HS DE+VLT A W+LSYL+DGTN+KIQ VI+AGV PRLV+LL HPSPSVL PALRT+G
Sbjct:   255 LLHSTDEEVLTDASWALSYLSDGTNEKIQTVIDAGVIPRLVQLLAHPSPSVLIPALRTIG 314

Query:   240 NIVTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAG 299
             NIVTGDD QTQ +I+  A+P LL++L + +               TAGN  QIQ V  AG
Sbjct:   315 NIVTGDDIQTQAVISSQALPGLLNLLKNTYKKSIKKEACWTISNITAGNTSQIQEVFQAG 374

Query:   300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIV 359
             +IRP++NLL+  EF+ KKEA WAISNATSGG  +QIK LV +GC++PLCDLL C DP +V
Sbjct:   375 IIRPLINLLEIGEFEIKKEAVWAISNATSGGNHDQIKFLVSQGCIRPLCDLLPCPDPRVV 434

Query:   360 TVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVK 419
             TV L GLENILKVGEAE+N+G T G+ N YAQ +E+A GL+KIENLQSHDNNEI+EK+VK
Sbjct:   435 TVTLEGLENILKVGEAEKNLGNT-GNDNLYAQMIEDADGLDKIENLQSHDNNEIYEKAVK 493

Query:   420 IFKTYWCGRNEEEDALGSNVITN 442
             I ++YW   +EEED  G +   N
Sbjct:   494 ILESYWAADDEEEDIGGVDAPEN 516

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2155929 IMPA-5 "importin alpha isoform 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1317 (468.7 bits), Expect = 2.0e-134, P = 2.0e-134
 Identities = 264/429 (61%), Positives = 320/429 (74%)

Query:     7 LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEA 66
             ++ GV+SDD SLQLE TT  R +LSFDR+PP + VI+SGVVPRFVEFL ++D P+LQ+EA
Sbjct:    75 MITGVFSDDPSLQLEYTTRFRVVLSFDRSPPTDNVIKSGVVPRFVEFLKKDDNPKLQFEA 134

Query:    67 AWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 126
             AW L NIASG SE+T VVIDHG VP+FV+LL+SP DDVREQA+W LGNVAGDS +CRD V
Sbjct:   135 AWALTNIASGASEHTKVVIDHGVVPLFVQLLASPDDDVREQAIWGLGNVAGDSIQCRDFV 194

Query:   127 LSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDE 186
             L+ GA IPLL +LN HA LS+LRNAT TLSNF RGKP PPFD V+  LP L +LV+S+DE
Sbjct:   195 LNSGAFIPLLHQLNNHATLSILRNATWTLSNFFRGKPSPPFDLVKHVLPVLKRLVYSDDE 254

Query:   187 DVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDD 246
              VL  ACW+LS L+D +N+ IQ+VIEAGV PRLVELL H SP VL PALR +GNIV+G+ 
Sbjct:   255 QVLIDACWALSNLSDASNENIQSVIEAGVVPRLVELLQHASPVVLVPALRCIGNIVSGNS 314

Query:   247 FQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLIRPIVN 306
              QT C+IN G +P L D+L  NH               TAG  EQIQ+VIDA LI  +VN
Sbjct:   315 QQTHCVINCGVLPVLADLLTQNHMRGIRREACWTISNITAGLEEQIQSVIDANLIPSLVN 374

Query:   307 LLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGL 366
             L Q+AEFD KKEA WAISNA+ GG+  QIK+LV + C+K LCD+L+C D  I+ V L GL
Sbjct:   375 LAQHAEFDIKKEAIWAISNASVGGSPNQIKYLVEQNCIKALCDILVCPDLRIILVSLGGL 434

Query:   367 ENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWC 426
             E IL  GE ++N+     DVN Y+Q +E+A GLEKIENLQ H NNEI+EK+VKI +TY  
Sbjct:   435 EMILIAGEVDKNLR----DVNCYSQMIEDAEGLEKIENLQHHGNNEIYEKAVKILQTY-- 488

Query:   427 GRNEEEDAL 435
             G  EE+  L
Sbjct:   489 GLVEEDGRL 497

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0009407 "toxin catabolic process" evidence=RCA

ASPGD|ASPL0000045550 kapA [Emericella nidulans (taxid:162425)]

 Score = 1267 (451.1 bits), Expect = 4.0e-129, P = 4.0e-129
 Identities = 258/435 (59%), Positives = 327/435 (75%)

Query:     5 PALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQY 64
             P +V GV+SD    Q++ATT  RKLLS +RNPPIE+VI++GVV RFVEFL R  +  +Q+
Sbjct:    85 PEMVKGVFSDQIEAQIQATTKFRKLLSKERNPPIERVIETGVVSRFVEFL-RSPHTLVQF 143

Query:    65 EAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD 124
             EAAW L NIASG+++ T VVI+ GAVPIFV+LLSSP  DVREQAVWALGN+AGDSP+CRD
Sbjct:   144 EAAWALTNIASGSAQQTQVVIEAGAVPIFVELLSSPEPDVREQAVWALGNIAGDSPQCRD 203

Query:   125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLVHS 183
              VL+ GAL PLL  +N+  K+SMLRNAT TLSNFCRGK P+P ++ + PALP LA+L++ 
Sbjct:   204 FVLNAGALRPLLTLINDGRKISMLRNATWTLSNFCRGKTPQPDWNTIAPALPVLAKLIYM 263

Query:   184 NDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVT 243
              D++VL  ACW++SYL+DG N+KIQAVIEAG+  RLVELL H S SV TPALR+VGNIVT
Sbjct:   264 LDDEVLIDACWAISYLSDGPNEKIQAVIEAGIPRRLVELLMHASTSVQTPALRSVGNIVT 323

Query:   244 GDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLIRP 303
             GDD QTQ IIN GA+P LL +L  +                TAGN  QIQ+VIDAG+I P
Sbjct:   324 GDDVQTQVIINCGALPALLSLL-SSTKDGIRKEACWTISNITAGNSSQIQSVIDAGIIPP 382

Query:   304 IVNLLQNAEFDTKKEAAWAISNATSGGTQ--EQIKHLVREGCVKPLCDLLLCSDPEIVTV 361
             +V+LL N +F T+KEA WAISNATSGG Q  +QI++LV +GC+KPLCDLL C D +I+ V
Sbjct:   383 LVHLLANGDFKTRKEACWAISNATSGGLQKPDQIRYLVTQGCIKPLCDLLACPDNKIIQV 442

Query:   362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421
              L GLENILKVGE ++  G     VN+YA F+EEAGG+EKI + Q++ N EI+ K+  I 
Sbjct:   443 ALDGLENILKVGEMDKEAGQGDAHVNRYALFIEEAGGMEKIHDCQNNANEEIYMKAYNII 502

Query:   422 KTYWCGRNEEEDALG 436
             + Y+   ++E++A G
Sbjct:   503 EKYF---SDEDEAAG 514

GO:0006606 "protein import into nucleus" evidence=IMP

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

TAIR|locus:2078122 IMPA-7 "importin alpha isoform 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1265 (450.4 bits), Expect = 6.6e-129, P = 6.6e-129
 Identities = 258/434 (59%), Positives = 318/434 (73%)

Query:     7 LVAGVWSDDNSLQLEATTLSRKLLSFDR-NPPIEKVIQSGVVPRFVEFLMREDYPQLQYE 65
             L++ +WSD+  L +EATT  R LL  +  N  +E+VIQ+G+VPRFVEFL  +D PQLQ+E
Sbjct:    64 LISCIWSDERDLLIEATTQIRTLLCGEMFNVRVEEVIQAGLVPRFVEFLTWDDSPQLQFE 123

Query:    66 AAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDL 125
             AAW L NIASGTSENT VVIDHGAV I V+LL+SP D VREQ VWALGN++GDSPRCRD+
Sbjct:   124 AAWALTNIASGTSENTEVVIDHGAVAILVRLLNSPYDVVREQVVWALGNISGDSPRCRDI 183

Query:   126 VLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSND 185
             VL   AL  LL +LN  AKLSML NA  TLSN CRGKP+PPFDQV  ALPALAQL+  +D
Sbjct:   184 VLGHAALPSLLLQLNHGAKLSMLVNAAWTLSNLCRGKPQPPFDQVSAALPALAQLIRLDD 243

Query:   186 EDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGD 245
             +++L Y CW+L YL+DG+N+KIQAVIEA VC RL+ L  H SPSV+TPALRT+GNIVTG+
Sbjct:   244 KELLAYTCWALVYLSDGSNEKIQAVIEANVCARLIGLSIHRSPSVITPALRTIGNIVTGN 303

Query:   246 DFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLIRPIV 305
             D QTQ II+  A+P L+++L  ++               TAG + QIQAV DA +   +V
Sbjct:   304 DSQTQHIIDLQALPCLVNLLRGSYNKTIRKEACWTVSNITAGCQSQIQAVFDADICPALV 363

Query:   306 NLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIG 365
             NLLQN+E D KKEAAWAI NA +GG+ +QI  LV++ C+KPLCDLL CSD ++V VCL  
Sbjct:   364 NLLQNSEGDVKKEAAWAICNAIAGGSYKQIMFLVKQECIKPLCDLLTCSDTQLVMVCLEA 423

Query:   366 LENILKVGE------AERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVK 419
             L+ ILKVGE      AE        +VN +AQ +EEA GLEKIE LQSH+NN+I+E +VK
Sbjct:   424 LKKILKVGEVFSSRHAEGIYQCPQTNVNPHAQLIEEAEGLEKIEGLQSHENNDIYETAVK 483

Query:   420 IFKTYWCGRNEEED 433
             I +TYW    EEED
Sbjct:   484 ILETYWMEEEEEED 497

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

UNIPROTKB|G4MZS0 MGG_15072 "Importin subunit alpha" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 1231 (438.4 bits), Expect = 2.6e-125, P = 2.6e-125
 Identities = 254/433 (58%), Positives = 317/433 (73%)

Query:     5 PALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQY 64
             P +V GV+S+    Q++ATT  RKLLS +RNPPIE+VI++GVV RFVEFL R  +  +Q+
Sbjct:    84 PQMVQGVFSESIDAQIQATTKFRKLLSKERNPPIEEVIKTGVVSRFVEFL-RSPHTLVQF 142

Query:    65 EAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD 124
             EAAW L NIASG++  T VVI+ GAVPIFV+LL SP  DVREQAVWALGN+AGDSP+CRD
Sbjct:   143 EAAWALTNIASGSATQTQVVIEAGAVPIFVELLGSPEPDVREQAVWALGNIAGDSPQCRD 202

Query:   125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLVHS 183
              VLS GAL PLL  L +  KLSMLRNAT TLSNFCRGK P+P +  + PALP LA+LV+S
Sbjct:   203 YVLSCGALKPLLNLLGDSRKLSMLRNATWTLSNFCRGKTPQPDWTTIAPALPVLAKLVYS 262

Query:   184 NDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVT 243
              D++VL  ACW++SYL+DG+NDKIQAVIEAG+  RLVELL H S SV TPALR+VGNIVT
Sbjct:   263 LDDEVLIDACWAISYLSDGSNDKIQAVIEAGIPRRLVELLMHASTSVQTPALRSVGNIVT 322

Query:   244 GDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLIRP 303
             GDD QTQ IIN GA+P LL +L  N                TAGN  QIQ+V+DA +I P
Sbjct:   323 GDDVQTQVIINCGALPCLLSLLGSNKDGIRKEACWTISNI-TAGNSAQIQSVVDANIIPP 381

Query:   304 IVNLLQNAEFDTKKEAAWAISNATSGGTQ--EQIKHLVREGCVKPLCDLLLCSDPEIVTV 361
             +++LL N +  T+KEA WAISNATSGG Q  +QI++LV +GC+KPLCDLL C D +I+ V
Sbjct:   382 LIHLLSNGDLKTRKEACWAISNATSGGLQKPDQIRYLVAQGCIKPLCDLLSCPDNKIIQV 441

Query:   362 CLIGLENILKVGEAERNM-GTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKI 420
              L GLENILKVG+ ++   G     +N+YA F+EE GG+EKI   Q++ N EI+ K+  I
Sbjct:   442 ALDGLENILKVGDLDKQAAGEGQDSINRYALFIEECGGMEKIHECQTNANEEIYMKAFNI 501

Query:   421 FKTYWCGRNEEED 433
              + Y+   +E  D
Sbjct:   502 IEKYFSDDDENAD 514

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0272318 DDB_G0272318 "putative importin subunit alpha B" [Dictyostelium discoideum (taxid:44689)]

 Score = 1196 (426.1 bits), Expect = 1.3e-121, P = 1.3e-121
 Identities = 246/435 (56%), Positives = 317/435 (72%)

Query:     1 LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYP 60
             L   P+LVA + S++  L L++TT  RKLLS +++PPIE+VI++G+VPR V+FL  +D+P
Sbjct:    66 LEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFLYMQDFP 125

Query:    61 QLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP 120
             QLQ+EAAW L NIASGT E T VVI++GA+ +FV LLSSP DDVREQAVWALGN+AGDS 
Sbjct:   126 QLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGNIAGDSH 185

Query:   121 RCRDLVLSQGALIPLLAELNEHA--KLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALA 178
              CRDLVLS  AL PLL+ L   A  K+SM+RNAT TLSNFCRGKP+PPF+ VR +LP LA
Sbjct:   186 YCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRASLPVLA 245

Query:   179 QLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTV 238
             +L++  DE+VL  ACW+LSYL+DG+N++IQ VI+A VC ++VELLGHP+ +V TPALRT+
Sbjct:   246 KLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQTPALRTI 305

Query:   239 GNIVTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDA 298
             GNIVTGDD QTQ +++  A+ +LL++L  +                TAG++ QIQ VIDA
Sbjct:   306 GNIVTGDDNQTQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNITAGDKNQIQQVIDA 364

Query:   299 GLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEI 358
              +I  +V LL NAEF+ +KEAAWAISNATS GT +QI  LV +GCVKPLCDLL  SDP I
Sbjct:   365 NIIPSLVYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVSQGCVKPLCDLLKVSDPRI 424

Query:   359 VTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSV 418
             + V L G+ENIL  G+ E      +  VN Y + +E+A GL KI +LQ H N +  EK  
Sbjct:   425 INVALEGIENILVAGKKEAQ----VTGVNPYKKIIEDADGLGKIYDLQHHMNKDTFEKVS 480

Query:   419 KIFKTYWCGRNEEED 433
             +I  TY    +E+ED
Sbjct:   481 RIISTYL--EDEQED 493

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O35345	IMA7_MOUSE	No assigned EC number	0.5678	0.9618	0.8003	yes	no
Q19969	IMA3_CAEEL	No assigned EC number	0.4675	0.9372	0.8132	yes	no
Q5RBV0	IMA7_PONAB	No assigned EC number	0.5688	0.9596	0.7985	yes	no
Q02821	IMA1_YEAST	No assigned EC number	0.5527	0.9506	0.7822	yes	no
Q96321	IMA1_ARATH	No assigned EC number	0.7459	0.9618	0.8063	no	no
O94374	IMA2_SCHPO	No assigned EC number	0.5529	0.9551	0.7903	yes	no
Q76P29	IMAB_DICDI	No assigned EC number	0.5812	0.9641	0.8333	yes	no
O22478	IMA_SOLLC	No assigned EC number	0.7413	0.9618	0.8140	N/A	no
O60684	IMA7_HUMAN	No assigned EC number	0.5688	0.9596	0.7985	yes	no
Q0V7M0	IMA7_BOVIN	No assigned EC number	0.5711	0.9596	0.7985	yes	no
Q71VM4	IMA1A_ORYSJ	No assigned EC number	0.7545	0.9775	0.8288	yes	no
Q9SLX0	IMA1B_ORYSJ	No assigned EC number	0.7368	0.9708	0.8108	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	446
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	0.0
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	4e-31
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-28
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-25
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	6e-22
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	7e-21
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-19
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	4e-18
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	2e-10
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	3e-10
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-09
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	3e-08
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	1e-07
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	2e-07
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	2e-07
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	7e-06
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	2e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	4e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	4e-05
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	4e-05
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	5e-05
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	7e-05
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-04
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	3e-04
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	5e-04
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	6e-04
pfam02985	31	pfam02985, HEAT, HEAT repeat	8e-04
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	0.003

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score =  515 bits (1329), Expect = 0.0
 Identities = 237/434 (54%), Positives = 301/434 (69%), Gaps = 7/434 (1%)

Query: 4   FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQ 63
            P L   ++SDD   QL+A    RKLLS + +PPI+ VI +GVVPRFVEF+       LQ
Sbjct: 73  LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQ 132

Query: 64  YEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCR 123
           +EAAW L NIASGT++ T VV+D GAVP+F++LLSS  DDVREQAVWALGN+AGDS  CR
Sbjct: 133 FEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCR 192

Query: 124 DLVLSQGALIPLLAELNEHA-KLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLV 181
           D VL  GAL PLL  L   A  +SMLRNAT TLSN CRGK P P +  +  ALP LA+L+
Sbjct: 193 DYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLI 252

Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
           +S D +VL  ACW++SYL+DG N+KIQAV++ G+  RLVELL H S  + TPALR+VGNI
Sbjct: 253 YSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNI 312

Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLI 301
           VTG D QTQ IIN GA+     +L    E  I+KE  W ISNITAGN EQIQAVIDA LI
Sbjct: 313 VTGSDDQTQVIINCGALKAFRSLLSSPKEN-IRKEACWTISNITAGNTEQIQAVIDANLI 371

Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQ--EQIKHLVREGCVKPLCDLLLCSDPEIV 359
            P+++LL +AE+  KKEA WAISNATSGG    + I++LV +G +KPLCDLL   D +I+
Sbjct: 372 PPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKII 431

Query: 360 TVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVK 419
            V L  +ENILKVGE +R       ++N YA +VE+AGG++ I  LQ   N  I++K+  
Sbjct: 432 EVALDAIENILKVGEQDRLRYGK--NINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYS 489

Query: 420 IFKTYWCGRNEEED 433
           I + ++   +  ++
Sbjct: 490 IIEKFFGEEDAVDE 503

Length = 526

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  115 bits (290), Expect = 4e-31
 Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 2/122 (1%)

Query: 39  EKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLS 98
           E VIQ+G +P  V  L   D   +Q EAAW L N+++G ++N   V++ G +P  V+LL 
Sbjct: 1   EAVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK 59

Query: 99  SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNF 158
           S  ++V + A+WAL N+A      + +VL  G  +P L  L + +   + +NAT  LSN 
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGG-VPKLVNLLDSSNEDIQKNATGALSNL 118

Query: 159 CR 160
             
Sbjct: 119 AS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  107 bits (269), Expect = 3e-28
 Identities = 44/114 (38%), Positives = 67/114 (58%), Gaps = 1/114 (0%)

Query: 173 ALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLT 232
            LPAL  L+ S+DE+V   A W+LS L+ G ND IQAV+EAG  P LV+LL      V+ 
Sbjct: 8   GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVK 67

Query: 233 PALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA 286
            AL  + N+  G +     ++  G VP L+++L  ++E+I  K  +  +SN+ +
Sbjct: 68  AALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQ-KNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  100 bits (250), Expect = 2e-25
 Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 1/121 (0%)

Query: 208 QAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVH 267
           +AVI+AG  P LV LL     +V   A   + N+  G++   Q ++  G +P L+ +L  
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60

Query: 268 NHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNAT 327
             EE++ K   W + N+ AG  +    V++AG +  +VNLL ++  D +K A  A+SN  
Sbjct: 61  EDEEVV-KAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

Query: 328 S 328
           S
Sbjct: 120 S 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 90.5 bits (225), Expect = 6e-22
 Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 14/129 (10%)

Query: 293 QAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLL 352
           +AVI AG +  +V+LL +++ + ++EAAWA+SN ++G   + I+ +V  G +  L  LL 
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAG-NNDNIQAVVEAGGLPALVQLLK 59

Query: 353 CSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNE 412
             D E+V   L  L N+    E  + +             V EAGG+ K+ NL    N +
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNKLI-------------VLEAGGVPKLVNLLDSSNED 106

Query: 413 IHEKSVKIF 421
           I + +    
Sbjct: 107 IQKNATGAL 115

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 87.4 bits (217), Expect = 7e-21
 Identities = 37/118 (31%), Positives = 68/118 (57%), Gaps = 2/118 (1%)

Query: 252 IINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA 311
           +I  G +P L+ +L  + E + ++E +W +SN++AGN + IQAV++AG +  +V LL++ 
Sbjct: 3   VIQAGGLPALVSLLSSSDENV-QREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 312 EFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENI 369
           + +  K A WA+ N  +G    ++  ++  G V  L +LL  S+ +I       L N+
Sbjct: 62  DEEVVKAALWALRNLAAGPEDNKLI-VLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 83.5 bits (207), Expect = 2e-19
 Identities = 39/114 (34%), Positives = 55/114 (48%), Gaps = 3/114 (2%)

Query: 132 LIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPA--LPALAQLVHSNDEDVL 189
            +P L  L   +  ++ R A   LSN   G  +     V  A  LPAL QL+ S DE+V+
Sbjct: 8   GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNI-QAVVEAGGLPALVQLLKSEDEEVV 66

Query: 190 TYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVT 243
             A W+L  LA G  D    V+EAG  P+LV LL   +  +   A   + N+ +
Sbjct: 67  KAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 79.7 bits (197), Expect = 4e-18
 Identities = 43/113 (38%), Positives = 67/113 (59%), Gaps = 4/113 (3%)

Query: 5   PALVAGVWSDDNSLQLEAT-TLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQ 63
           PALV+ + S D ++Q EA   LS   LS   N  I+ V+++G +P  V+ L  ED  ++ 
Sbjct: 10  PALVSLLSSSDENVQREAAWALSN--LSAGNNDNIQAVVEAGGLPALVQLLKSED-EEVV 66

Query: 64  YEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVA 116
             A W L N+A+G  +N  +V++ G VP  V LL S ++D+++ A  AL N+A
Sbjct: 67  KAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 55.5 bits (135), Expect = 2e-10
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 77  TSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVA 116
             EN   V+D G +P  V+LL S  ++V ++A WAL N++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 54.8 bits (133), Expect = 3e-10
 Identities = 22/40 (55%), Positives = 30/40 (75%)

Query: 77  TSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVA 116
           + EN   VI+ GAVP  V+LLSSP ++V+E+A WAL N+A
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 52.5 bits (127), Expect = 2e-09
 Identities = 18/41 (43%), Positives = 29/41 (70%)

Query: 288 NREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATS 328
           + E  QAVI+AG + P+V LL + + + ++EAAWA+SN  +
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 49.0 bits (118), Expect = 3e-08
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 203 TNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVT 243
           + +  QAVIEAG  P LV+LL  P   V   A   + N+  
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 47.4 bits (114), Expect = 1e-07
 Identities = 19/41 (46%), Positives = 29/41 (70%)

Query: 288 NREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATS 328
           + E  QAV+DAG +  +V LL++ + +  KEAAWA+SN +S
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 47.0 bits (113), Expect = 2e-07
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 203 TNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIV 242
            ++  QAV++AG  P LVELL      V+  A   + N+ 
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 60  PQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNV 115
            +++  AA  L  +A G  E     +    +P  + LL    D+VRE A WALG +
Sbjct: 1   WEVREAAALALGALAGGGPELLRPAVPE-LLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 47.2 bits (112), Expect = 7e-06
 Identities = 47/212 (22%), Positives = 69/212 (32%), Gaps = 38/212 (17%)

Query: 50  FVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAV 109
            +  L+ ++   ++  AA  L  + S             AVP+  +LLS     VR+ A 
Sbjct: 47  ELLKLLEDEDLLVRLSAAVALGELGSEE-----------AVPLLRELLSDEDPRVRDAAA 95

Query: 110 WALGNVAGDSPRCRDLV----------LSQGALIPLLAELNEHAKLSMLRNATRTLSNFC 159
            ALG + GD      LV          +   A   L    +E A   +L       S   
Sbjct: 96  DALGEL-GDPEAVPPLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQDEDSGSA 154

Query: 160 RGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQ-AVIEA----- 213
               +     VR A  A   L    D +    A   L  L +  +  ++ A   A     
Sbjct: 155 AAALDAALLDVRAA--AAEALGELGDPE----AIPLLIELLEDEDADVRRAAASALGQLG 208

Query: 214 ----GVCPRLVELLGHPSPSVLTPALRTVGNI 241
                    LV+ L   S  V   AL  +G I
Sbjct: 209 SENVEAADLLVKALSDESLEVRKAALLALGEI 240

Length = 335

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 11/73 (15%)

Query: 47  VPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVRE 106
           +   +E L+ +  P+++  AA  L  +            D  A+P  ++LL  P  +VR 
Sbjct: 1   LEALLEALLSDPDPEVRAAAARALGELG-----------DPEALPALLELLKDPDPEVRR 49

Query: 107 QAVWALGNVAGDS 119
            A  ALG +    
Sbjct: 50  AAAEALGKLGDPE 62

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 40.1 bits (95), Expect = 4e-05
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 34 RNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIAS 75
           +   + V+ +G +P  VE L  ED  ++  EAAW L N++S
Sbjct: 1  DDENKQAVVDAGGLPALVELLKSED-EEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 40.1 bits (95), Expect = 4e-05
 Identities = 11/39 (28%), Positives = 17/39 (43%)

Query: 331 TQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENI 369
             E  + +V  G +  L +LL   D E+V      L N+
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 40.5 bits (96), Expect = 4e-05
 Identities = 15/29 (51%), Positives = 19/29 (65%)

Query: 173 ALPALAQLVHSNDEDVLTYACWSLSYLAD 201
           A+P L QL+ S DE+V   A W+LS LA 
Sbjct: 13  AVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 40.1 bits (95), Expect = 5e-05
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 248 QTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA 286
             Q +I  GAVP L+ +L    EE +++E +W +SN+ A
Sbjct: 4   NKQAVIEAGAVPPLVQLLSSPDEE-VQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 39.7 bits (94), Expect = 7e-05
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 35 NPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIAS 75
              + VI++G VP  V+ L   D  ++Q EAAW L N+A+
Sbjct: 2  PENKQAVIEAGAVPPLVQLLSSPD-EEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 38.2 bits (90), Expect = 2e-04
 Identities = 11/39 (28%), Positives = 17/39 (43%)

Query: 331 TQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENI 369
           + E  + ++  G V PL  LL   D E+       L N+
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 104 VREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNF 158
           VRE A  ALG +AG  P      + +  L+P L  L +     +   A   L   
Sbjct: 3   VREAAALALGALAGGGPELLRPAVPE--LLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 37.0 bits (87), Expect = 5e-04
 Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 245 DDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA 286
           DD   Q +++ G +P L+++L    EE + KE +W +SN+++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEE-VVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 37.0 bits (87), Expect = 6e-04
 Identities = 14/29 (48%), Positives = 20/29 (68%)

Query: 173 ALPALAQLVHSNDEDVLTYACWSLSYLAD 201
            LPAL +L+ S DE+V+  A W+LS L+ 
Sbjct: 13  GLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|202500 pfam02985, HEAT, HEAT repeat

 Score = 36.3 bits (85), Expect = 8e-04
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 90  VPIFVKLLSSPSDDVREQAVWALGNVA 116
           +P+ ++LL+ P  +VRE A  ALG +A
Sbjct: 2   LPLLLELLNDPDPEVREAAAEALGALA 28

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). Length = 31

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 34.7 bits (81), Expect = 0.003
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 119 SPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR 160
           SP  +  V+  GA +P L +L       +   A   LSN   
Sbjct: 1   SPENKQAVIEAGA-VPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	446
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	100.0
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.97
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.96
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.88
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.87
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.83
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.82
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.79
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.78
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.78
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.78
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.77
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.76
PRK09687	280	putative lyase; Provisional	99.74
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.73
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.73
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.73
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.72
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.72
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.72
PRK09687	280	putative lyase; Provisional	99.71
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.67
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.64
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.64
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.64
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.62
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.62
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.6
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.58
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.58
PTZ00429	746	beta-adaptin; Provisional	99.57
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.55
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.54
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.53
PTZ00429	746	beta-adaptin; Provisional	99.49
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.49
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.49
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.46
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.44
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.4
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.37
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.33
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.32
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	99.26
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.26
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.25
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	99.25
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	99.24
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.17
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	99.16
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	99.15
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.12
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.11
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.06
KOG0212	675	consensus Uncharacterized conserved protein [Funct	99.04
KOG1824	1233	consensus TATA-binding protein-interacting protein	99.03
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	99.03
KOG4413	524	consensus 26S proteasome regulatory complex, subun	99.03
KOG0212	675	consensus Uncharacterized conserved protein [Funct	99.03
KOG1242	569	consensus Protein containing adaptin N-terminal re	99.01
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.99
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.99
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.98
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.98
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.97
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.95
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.92
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.88
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.88
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.87
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.84
PF05536	543	Neurochondrin: Neurochondrin	98.84
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	98.82
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.82
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.78
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.76
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.74
COG5369	743	Uncharacterized conserved protein [Function unknow	98.73
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.73
TIGR02270	410	conserved hypothetical protein. Members are found	98.72
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.7
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.68
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.67
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.67
COG5369	743	Uncharacterized conserved protein [Function unknow	98.66
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.66
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.65
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.6
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.58
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.55
TIGR02270	410	conserved hypothetical protein. Members are found	98.55
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.54
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.51
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.5
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.46
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.43
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.4
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.39
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.38
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.38
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.37
COG5096	757	Vesicle coat complex, various subunits [Intracellu	98.36
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.35
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.34
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.32
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	98.31
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.23
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.22
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.19
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.18
PF05536	543	Neurochondrin: Neurochondrin	98.18
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.16
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.16
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.15
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	98.13
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.12
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.11
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	98.07
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	98.04
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.02
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.96
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.95
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.95
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.94
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.94
KOG2062	929	consensus 26S proteasome regulatory complex, subun	97.9
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.84
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.84
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.83
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.83
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.8
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.78
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.78
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.77
KOG0567	289	consensus HEAT repeat-containing protein [General	97.77
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.73
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.7
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.68
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.67
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.66
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.64
KOG0567	289	consensus HEAT repeat-containing protein [General	97.61
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.61
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.59
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.58
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.54
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.53
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	97.5
KOG4653	982	consensus Uncharacterized conserved protein [Funct	97.47
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.46
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.46
KOG0414	1251	consensus Chromosome condensation complex Condensi	97.42
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.36
KOG2032	533	consensus Uncharacterized conserved protein [Funct	97.34
KOG2025	892	consensus Chromosome condensation complex Condensi	97.34
KOG2032	533	consensus Uncharacterized conserved protein [Funct	97.33
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.33
KOG4653	982	consensus Uncharacterized conserved protein [Funct	97.33
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	97.29
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.28
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	97.27
PF05004	309	IFRD: Interferon-related developmental regulator (	97.26
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	97.26
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.23
KOG3036	293	consensus Protein involved in cell differentiation	97.2
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.15
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	97.13
KOG2062	929	consensus 26S proteasome regulatory complex, subun	97.1
PF05004	309	IFRD: Interferon-related developmental regulator (	97.09
COG5656	970	SXM1 Importin, protein involved in nuclear import	97.09
KOG0414	1251	consensus Chromosome condensation complex Condensi	97.01
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	97.01
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	97.01
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.94
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.93
KOG2956	516	consensus CLIP-associating protein [General functi	96.89
KOG1243	690	consensus Protein kinase [General function predict	96.85
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.84
KOG2956	516	consensus CLIP-associating protein [General functi	96.84
KOG3036	293	consensus Protein involved in cell differentiation	96.66
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	96.54
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.51
PRK14707	2710	hypothetical protein; Provisional	96.44
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	96.42
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.39
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.31
COG5656	970	SXM1 Importin, protein involved in nuclear import	96.3
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	96.27
COG5098	1128	Chromosome condensation complex Condensin, subunit	96.27
KOG2025	892	consensus Chromosome condensation complex Condensi	96.24
PRK14707	2710	hypothetical protein; Provisional	96.23
COG5116	926	RPN2 26S proteasome regulatory complex component [	96.23
COG5098	1128	Chromosome condensation complex Condensin, subunit	96.23
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	96.21
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	96.2
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	96.19
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.18
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.14
PF07814	361	WAPL: Wings apart-like protein regulation of heter	96.11
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	96.09
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	96.05
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	95.93
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	95.89
PF07814	361	WAPL: Wings apart-like protein regulation of heter	95.82
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.81
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	95.79
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	95.77
KOG1243	690	consensus Protein kinase [General function predict	95.67
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	95.57
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	95.55
KOG0413	1529	consensus Uncharacterized conserved protein relate	95.54
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	95.53
KOG2137	700	consensus Protein kinase [Signal transduction mech	95.5
KOG2933	334	consensus Uncharacterized conserved protein [Funct	95.48
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.42
COG5116	926	RPN2 26S proteasome regulatory complex component [	95.37
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	95.31
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	95.1
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	95.05
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	94.99
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.96
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	94.89
KOG2137	700	consensus Protein kinase [Signal transduction mech	94.87
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	94.78
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	94.74
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	94.71
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	94.7
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	94.68
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	94.67
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	94.63
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	94.63
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	94.6
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.57
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	94.51
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	94.49
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	94.34
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	94.25
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	94.13
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	94.06
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	94.04
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	93.94
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	93.93
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	93.92
KOG0413	1529	consensus Uncharacterized conserved protein relate	93.85
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	93.75
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	93.75
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	93.63
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	93.62
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	93.58
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	93.52
KOG2933	334	consensus Uncharacterized conserved protein [Funct	93.49
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	93.45
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	93.3
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	93.3
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	93.24
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	93.2
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	93.07
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	92.8
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	92.77
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	92.76
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	92.52
cd03561	133	VHS VHS domain family; The VHS domain is present i	92.41
cd03561	133	VHS VHS domain family; The VHS domain is present i	92.37
KOG2005	878	consensus 26S proteasome regulatory complex, subun	92.24
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	91.87
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	91.59
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	91.52
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	91.43
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	91.25
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	91.01
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	91.0
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	90.78
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	90.68
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	90.61
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	90.25
PF04388	668	Hamartin: Hamartin protein; InterPro: IPR007483 Th	89.83
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	89.81
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	89.8
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	89.73
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	89.66
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	89.56
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	89.04
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	89.04
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	89.02
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	88.93
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	88.85
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	88.83
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	88.82
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	88.41
cd03565	141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	88.31
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	88.29
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	88.07
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	87.6
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	87.6
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	87.42
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	87.15
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	87.09
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	87.06
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	86.61
cd03565	141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	85.87
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	85.67
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	84.93
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	84.79
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	84.52
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	84.49
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	84.1
PF04869	312	Uso1_p115_head: Uso1 / p115 like vesicle tethering	83.98
KOG2199	462	consensus Signal transducing adaptor protein STAM/	83.51
PF12726	727	SEN1_N: SEN1 N terminal; InterPro: IPR024481 The y	82.28
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	82.12
KOG1410	1082	consensus Nuclear transport receptor RanBP16 (impo	81.82
KOG0889	3550	consensus Histone acetyltransferase SAGA, TRRAP/TR	81.02
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	81.02
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	80.89
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	80.69
PF12726	727	SEN1_N: SEN1 N terminal; InterPro: IPR024481 The y	80.56
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	80.55
PF04499	475	SAPS: SIT4 phosphatase-associated protein; InterPr	80.23

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.3e-62  Score=429.39  Aligned_cols=424  Identities=68%  Similarity=1.032  Sum_probs=402.6

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV   83 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   83 (446)
                      .+.+++.+.|+++..+..+...++++.+.+.+++...++..|++|.+++.|...+++.++..|+|+|.|+++++.+....
T Consensus        68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~  147 (514)
T KOG0166|consen   68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV  147 (514)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence            56788899999999999999999999999888899999999999999999987666999999999999999999999999


Q ss_pred             HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-
Q 043676           84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK-  162 (446)
Q Consensus        84 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-  162 (446)
                      +++.|+++.|+.++.+++..+++.|+|+|+|++.+++.+|+.+...|++++|+.++..+....+.+++.|+|+|||++. 
T Consensus       148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~  227 (514)
T KOG0166|consen  148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN  227 (514)
T ss_pred             cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999999999999965555689999999999999999 


Q ss_pred             CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhh
Q 043676          163 PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIV  242 (446)
Q Consensus       163 ~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~  242 (446)
                      |...+.....++|.|..++.+.|+++...++|++.+++.+..+.++.+++.|+++.|+.+|.+.+..++..|+++++|++
T Consensus       228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv  307 (514)
T KOG0166|consen  228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV  307 (514)
T ss_pred             CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence            88888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHH
Q 043676          243 TGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWA  322 (446)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a  322 (446)
                      .+++.+.+.+++.|+++.+..++.......+|++|+|+++|++++++++++.+++.|++|.|+.+++.++.++|++|+|+
T Consensus       308 tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawa  387 (514)
T KOG0166|consen  308 TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWA  387 (514)
T ss_pred             eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHH
Confidence            99999999999999999999999954377799999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHH
Q 043676          323 ISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKI  402 (446)
Q Consensus       323 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l  402 (446)
                      ++|++..+++++..++++.|++++++++|...|.++...++.++.++++.++....++    . +++...++++||++++
T Consensus       388 IsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~----~-n~~~~~IEe~ggldki  462 (514)
T KOG0166|consen  388 ISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRG----T-NPLAIMIEEAGGLDKI  462 (514)
T ss_pred             HHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhcccc----c-cHHHHHHHHccChhHH
Confidence            9999999999999999999999999999999999999999999999999999986321    1 7899999999999999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhcCCCCCcc
Q 043676          403 ENLQSHDNNEIHEKSVKIFKTYWCGRNEEE  432 (446)
Q Consensus       403 ~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~  432 (446)
                      +.|++|+|++++++|.++|++||.++++++
T Consensus       463 E~LQ~hen~~Iy~~A~~II~~yf~~e~~~~  492 (514)
T KOG0166|consen  463 ENLQSHENEEIYKKAYKIIDTYFSEEDDED  492 (514)
T ss_pred             HHhhccccHHHHHHHHHHHHHhcCCCcccc
Confidence            999999999999999999999999885555

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=5e-61  Score=393.18  Aligned_cols=438  Identities=55%  Similarity=0.837  Sum_probs=407.6

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676            3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN   82 (446)
Q Consensus         3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~   82 (446)
                      -+|.|.+.|.|+|-+.+..|..-++++++.+..++.+.+++.|++|.+++++.+....-.+..|+|+|.|++++......
T Consensus        72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk  151 (526)
T COG5064          72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK  151 (526)
T ss_pred             hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence            47899999999999999999999999999988999999999999999999996544368899999999999998888888


Q ss_pred             HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcccc-chhHHHHHHHHHHHhhcC
Q 043676           83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHA-KLSMLRNATRTLSNFCRG  161 (446)
Q Consensus        83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-~~~~~~~a~~~L~~l~~~  161 (446)
                      .+++.|++|.++++|.+++.+++++++|+|+|++.+++.+|+.+.+.|++.+++.++..+. +..+.+++.|+|+|||++
T Consensus       152 vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRG  231 (526)
T COG5064         152 VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRG  231 (526)
T ss_pred             EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCC
Confidence            8999999999999999999999999999999999999999999999999999999995433 468999999999999999


Q ss_pred             C-CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHH
Q 043676          162 K-PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN  240 (446)
Q Consensus       162 ~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~  240 (446)
                      . |..........+|.|.+++.+.|+++...++|++.+++..+.+..+.+++.|+.+.|+.+|.+++..++..|++.++|
T Consensus       232 knP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGN  311 (526)
T COG5064         232 KNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGN  311 (526)
T ss_pred             CCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcC
Confidence            8 778888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHH
Q 043676          241 IVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAA  320 (446)
Q Consensus       241 l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~  320 (446)
                      +..+++.+.+.++..|+++.+..+|.++ ...+|++|||+++|+++++.++++.+++.+++|+|+.++...+..++++||
T Consensus       312 IVTG~D~QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEAC  390 (526)
T COG5064         312 IVTGSDDQTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEAC  390 (526)
T ss_pred             eeecCccceehheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999 889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCC--CHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhCh
Q 043676          321 WAISNATSGG--TQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGG  398 (446)
Q Consensus       321 ~aL~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  398 (446)
                      ||+.|...++  .|+.++++++.|++++|+++|.-.+..+.+.+++++.++++.++..+....  ..+|.|...++++||
T Consensus       391 WAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~--~nin~ya~~vE~Agg  468 (526)
T COG5064         391 WAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYG--KNINIYAVYVEKAGG  468 (526)
T ss_pred             HHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhcc--CCccHHHHHHHhccc
Confidence            9999998764  578999999999999999999999988999999999999999988876544  367789999999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCcccccccccccCCc
Q 043676          399 LEKIENLQSHDNNEIHEKSVKIFKTYWCGRNEEEDALGSNVITNGK  444 (446)
Q Consensus       399 ~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~  444 (446)
                      ++.+..++++.+.+++.+|..||++||.++| +-+++.|+.-.|.|
T Consensus       469 md~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD-~vd~lapet~g~tf  513 (526)
T COG5064         469 MDAIHGLQDSVNRTIYDKAYSIIEKFFGEED-AVDELAPETAGNTF  513 (526)
T ss_pred             HHHHHHhhhccccHHHHHHHHHHHHHcccch-hhhhcCccccCCee
Confidence            9999999999999999999999999998874 44458887666654

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.2e-46  Score=331.36  Aligned_cols=370  Identities=25%  Similarity=0.386  Sum_probs=332.8

Q ss_pred             CChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhh
Q 043676            2 GSFPALVAGVWS-DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSEN   80 (446)
Q Consensus         2 ~~i~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~   80 (446)
                      |.+|.+++.|.. .++.+|+.|+|+|.+++++. .+..+.+++.|++|.|+.++.+++ .+++++|+|+|+|++.+++.+
T Consensus       109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~~  186 (514)
T KOG0166|consen  109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPDC  186 (514)
T ss_pred             CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChHH
Confidence            789999999985 56999999999999999987 788889999999999999999999 899999999999999999999


Q ss_pred             HHHHHhcCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 043676           81 TNVVIDHGAVPIFVKLLSSPSD-DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFC  159 (446)
Q Consensus        81 ~~~~~~~~~i~~L~~~L~~~~~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  159 (446)
                      |+.+++.|+++.|+.++..++. .+.+.+.|+|.|+|.+.......-.-..+++.|..++ .+.|+.+...++|++++|+
T Consensus       187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLs  265 (514)
T KOG0166|consen  187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLT  265 (514)
T ss_pred             HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHh
Confidence            9999999999999999998765 7888999999999976521112222234788899888 8999999999999999999


Q ss_pred             cCC-CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC-CCCccchhHHHHH
Q 043676          160 RGK-PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLTPALRT  237 (446)
Q Consensus       160 ~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~~~~~a~~~  237 (446)
                      .+. +...+....|.+|.|+.+|.+.+..++..++++++|++.+++...+.++..|+++.|..++. ++...++.+|+|+
T Consensus       266 dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~  345 (514)
T KOG0166|consen  266 DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWT  345 (514)
T ss_pred             cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHH
Confidence            887 55566667899999999999999999999999999999999999999999999999999999 5666699999999


Q ss_pred             HHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCCcchH
Q 043676          238 VGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA-GNREQIQAVIDAGLIRPIVNLLQNAEFDTK  316 (446)
Q Consensus       238 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~  316 (446)
                      ++|++.++.++.+.+++.|++|.|+.++++. +.++|++|+|+++|++. ++++++.++++.|++++|+.+|...|.++.
T Consensus       346 iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii  424 (514)
T KOG0166|consen  346 ISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKII  424 (514)
T ss_pred             HHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHH
Confidence            9999999999999999999999999999999 89999999999999987 689999999999999999999988899999


Q ss_pred             HHHHHHHHHhccCCC-------HHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhh
Q 043676          317 KEAAWAISNATSGGT-------QEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEA  375 (446)
Q Consensus       317 ~~a~~aL~~l~~~~~-------~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~  375 (446)
                      ..++.++.++...+.       ......+.+.|+++++..+-.+.+.++...|..++.++|..++.
T Consensus       425 ~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e~~  490 (514)
T KOG0166|consen  425 LVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEEDD  490 (514)
T ss_pred             HHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCCcc
Confidence            999999999977532       23345566789999999999999999999999999999876533

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=4.2e-45  Score=299.76  Aligned_cols=365  Identities=24%  Similarity=0.323  Sum_probs=324.5

Q ss_pred             CChHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhh
Q 043676            2 GSFPALVAGV-WSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSEN   80 (446)
Q Consensus         2 ~~i~~l~~~l-~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~   80 (446)
                      |.+|.+++.+ ..+..-.+++|+|+|.+++++. ..+.+.+++.|++|.++++|.+++ .+++.+++|+|+|++.+++.+
T Consensus       114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALGNiAGDS~~~  191 (526)
T COG5064         114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALGNIAGDSEGC  191 (526)
T ss_pred             cccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhccccCCchhH
Confidence            7899999999 5677788999999999999987 677788899999999999999999 899999999999999999999


Q ss_pred             HHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCC--hHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHH
Q 043676           81 TNVVIDHGAVPIFVKLLSSP--SDDVREQAVWALGNVAGDS--PRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLS  156 (446)
Q Consensus        81 ~~~~~~~~~i~~L~~~L~~~--~~~v~~~a~~~l~~l~~~~--~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~  156 (446)
                      |+.+.+.|++++++.++.+.  +..+.+++.|+|+|+|.+.  +..-..+.+  .++.|.+++ ...++++...|+|+++
T Consensus       192 RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isq--alpiL~KLi-ys~D~evlvDA~WAiS  268 (526)
T COG5064         192 RDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQ--ALPILAKLI-YSRDPEVLVDACWAIS  268 (526)
T ss_pred             HHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHH--HHHHHHHHH-hhcCHHHHHHHHHHHH
Confidence            99999999999999998874  4578899999999999654  222223322  578888888 8889999999999999


Q ss_pred             HhhcCC-CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHH
Q 043676          157 NFCRGK-PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPAL  235 (446)
Q Consensus       157 ~l~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~  235 (446)
                      +++..+ .........|+.+.|+.+|.+++..++..+++.++|+...++.+.+.++..|+++.+..+|.++...+|..||
T Consensus       269 YlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaC  348 (526)
T COG5064         269 YLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEAC  348 (526)
T ss_pred             HhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhh
Confidence            999987 3444455578899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC---CHHHHHHHHHcCChHHHHHHHhcCC
Q 043676          236 RTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG---NREQIQAVIDAGLIRPIVNLLQNAE  312 (446)
Q Consensus       236 ~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~i~~L~~ll~~~~  312 (446)
                      |+++|++.++.++.+.+++.+++|+|+.+|... +..++++|||+++|..++   .|+.++++++.|++.+|+++|...+
T Consensus       349 WTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~d  427 (526)
T COG5064         349 WTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVD  427 (526)
T ss_pred             eeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccC
Confidence            999999999999999999999999999999999 999999999999999873   6788999999999999999999988


Q ss_pred             cchHHHHHHHHHHhccCCCH----------HHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHh
Q 043676          313 FDTKKEAAWAISNATSGGTQ----------EQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKV  372 (446)
Q Consensus       313 ~~v~~~a~~aL~~l~~~~~~----------~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~  372 (446)
                      ..+.+.++.++.|+...+..          ....++.+.|+++.+..+-++.+.++..+|..++..+|..
T Consensus       428 Nkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFge  497 (526)
T COG5064         428 NKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGE  497 (526)
T ss_pred             ccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHccc
Confidence            88999999999999876532          2233444589999999999999999999999999988843

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=3e-40  Score=334.67  Aligned_cols=412  Identities=22%  Similarity=0.253  Sum_probs=335.9

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhH
Q 043676            2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENT   81 (446)
Q Consensus         2 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~   81 (446)
                      |++|.++++|+++++..|..|+++|.+++... .+.+..+++.|++|.|+++|++++++.+|+.|+|+|.+++.++++.+
T Consensus       189 GaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r  267 (2102)
T PLN03200        189 GGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAK  267 (2102)
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHH
Confidence            78999999999999999999999998888764 45788899999999999999876547999999999999999899999


Q ss_pred             HHHHhcCChHHHHHhhCCCC---------HHHHHHHHHHHHHhhCCChH-----------HHHH----------------
Q 043676           82 NVVIDHGAVPIFVKLLSSPS---------DDVREQAVWALGNVAGDSPR-----------CRDL----------------  125 (446)
Q Consensus        82 ~~~~~~~~i~~L~~~L~~~~---------~~v~~~a~~~l~~l~~~~~~-----------~~~~----------------  125 (446)
                      ..+++.|+++.|++++..++         ..++++|+|+|+|+|.+.+.           .++.                
T Consensus       268 ~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l  347 (2102)
T PLN03200        268 QAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMV  347 (2102)
T ss_pred             HHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHh
Confidence            99999999999999998655         34699999999999975322           0000                


Q ss_pred             ----------------------------------------------------HHHcCChHHHHHHhccccchhHHHHHHH
Q 043676          126 ----------------------------------------------------VLSQGALIPLLAELNEHAKLSMLRNATR  153 (446)
Q Consensus       126 ----------------------------------------------------~~~~~~i~~l~~~l~~~~~~~~~~~a~~  153 (446)
                                                                          +.+.++++.|+.++ ...+.+++..++|
T Consensus       348 ~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL-~~~~~evQ~~Av~  426 (2102)
T PLN03200        348 FDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLI-TMATADVQEELIR  426 (2102)
T ss_pred             cCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhh-ccCCHHHHHHHHH
Confidence                                                                00112222233333 3344678899999


Q ss_pred             HHHHhhcCC-CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchh
Q 043676          154 TLSNFCRGK-PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLT  232 (446)
Q Consensus       154 ~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~  232 (446)
                      +|++++.+. .........+++|.|+++|.+++..+++.+++++++++..+++....+.+.|+++.|+++|.+++..+++
T Consensus       427 aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqe  506 (2102)
T PLN03200        427 ALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKE  506 (2102)
T ss_pred             HHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHH
Confidence            999999876 4445556688999999999999999999999999999998887788899999999999999999999999


Q ss_pred             HHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHH--------------------------------
Q 043676          233 PALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWI--------------------------------  280 (446)
Q Consensus       233 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~--------------------------------  280 (446)
                      .|+|+|+|++.+.+..+..+.+.|+++.|+++|+++ +.+.++.|+|+                                
T Consensus       507 eAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg-d~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL  585 (2102)
T PLN03200        507 DSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG-GPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVL  585 (2102)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHH
Confidence            999999999986544333333556666666665555 44455555554                                


Q ss_pred             -----------------------------------------------HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCc
Q 043676          281 -----------------------------------------------ISNITAGNREQIQAVIDAGLIRPIVNLLQNAEF  313 (446)
Q Consensus       281 -----------------------------------------------l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~  313 (446)
                                                                     |.+++.++++....++..|++++++.++++++.
T Consensus       586 ~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~  665 (2102)
T PLN03200        586 DVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTE  665 (2102)
T ss_pred             HHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCh
Confidence                                                           444444445555666777889999999998889


Q ss_pred             chHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHH
Q 043676          314 DTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFV  393 (446)
Q Consensus       314 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l  393 (446)
                      ++++.++|+|.+++..+..++...+.+.|++++|++++++.+.++...++.+|.+++..++.              ...+
T Consensus       666 ~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~--------------~~ei  731 (2102)
T PLN03200        666 AVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEV--------------AAEA  731 (2102)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchH--------------HHHH
Confidence            99999999999999887888888889999999999999999999999999999999998876              3566


Q ss_pred             HHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 043676          394 EEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNE  430 (446)
Q Consensus       394 ~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~  430 (446)
                      .+.|+++.|.+++.+.+++.++.|.++|.++......
T Consensus       732 ~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~  768 (2102)
T PLN03200        732 LAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPV  768 (2102)
T ss_pred             HhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCCh
Confidence            6789999999999999999999999999888765543

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=5.8e-39  Score=325.42  Aligned_cols=416  Identities=18%  Similarity=0.185  Sum_probs=367.2

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhH
Q 043676            2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENT   81 (446)
Q Consensus         2 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~   81 (446)
                      |+++.|+.+|.+.+.++|..++++|..++.++ .+.++.+.+.|++|.|+++|.+++ +.+|..|++.+++++.++++++
T Consensus       404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr  481 (2102)
T PLN03200        404 EAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESK  481 (2102)
T ss_pred             cchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence            46788999999999999999999999988775 677888999999999999999998 8999999999999998888999


Q ss_pred             HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676           82 NVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG  161 (446)
Q Consensus        82 ~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  161 (446)
                      ..+++.|+++.|+++|.+++..+++.|+|+|+|++.+.+..+..+.+.|++++|+++| ++.+.+.+..++|+|.+++..
T Consensus       482 ~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~  560 (2102)
T PLN03200        482 WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRT  560 (2102)
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999988777888888899999999999 677899999999999999754


Q ss_pred             CCCC----------------------------------C----hhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCC
Q 043676          162 KPEP----------------------------------P----FDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGT  203 (446)
Q Consensus       162 ~~~~----------------------------------~----~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~  203 (446)
                      ....                                  .    .....++++.|+.+++++++.+++.++++|.+++...
T Consensus       561 ~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~  640 (2102)
T PLN03200        561 ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR  640 (2102)
T ss_pred             cchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence            3111                                  0    0012578999999999999999999999999999998


Q ss_pred             cHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCc-hhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHH
Q 043676          204 NDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDD-FQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIIS  282 (446)
Q Consensus       204 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~  282 (446)
                      ++..+.++..|++++++.++.+.+.+++..++++|++++.+.. .+...+++.|++++|+++|++. +..++..|+.+|.
T Consensus       641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALa  719 (2102)
T PLN03200        641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALA  719 (2102)
T ss_pred             hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHH
Confidence            8888889999999999999999999999999999999996443 4455678999999999999998 9999999999999


Q ss_pred             HHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHH--HHHHHHcCChHHHHhcccCCCHHHHH
Q 043676          283 NITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQ--IKHLVREGCVKPLCDLLLCSDPEIVT  360 (446)
Q Consensus       283 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~--~~~l~~~~~i~~L~~ll~~~~~~~~~  360 (446)
                      |++.. ++....+.+.|+++.|++++++++++.|+.|+++|.+++.....+.  ...+...|.+..|+++|+..|.+...
T Consensus       720 nLl~~-~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~  798 (2102)
T PLN03200        720 NLLSD-PEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSA  798 (2102)
T ss_pred             HHHcC-chHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhh
Confidence            99875 4456777788999999999999999999999999999998865444  35667789999999999998888766


Q ss_pred             H--HHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 043676          361 V--CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGR  428 (446)
Q Consensus       361 ~--~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~  428 (446)
                      .  ++++|..+.+..+...      ...+++...++..++++.|.+...+.+|.++++|.++|+++-.+.
T Consensus       799 ~~~al~~l~~l~~~~~~~~------~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~  862 (2102)
T PLN03200        799 TSEALEALALLARTKGGAN------FSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQ  862 (2102)
T ss_pred             HHHHHHHHHHHHhhcccCC------CCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccC
Confidence            6  9999999988655544      356778999999999999977779999999999999999987654

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.4e-33  Score=232.80  Aligned_cols=363  Identities=21%  Similarity=0.223  Sum_probs=319.6

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676            3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN   82 (446)
Q Consensus         3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~   82 (446)
                      ...++...+++.++.+|..+...+.+++-.  .++.-.++..+++..|+.-+..+. .++|..++.|+.|++. -++++.
T Consensus        86 s~epvl~llqs~d~~Iq~aa~~alGnlAVn--~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT-~d~nk~  161 (550)
T KOG4224|consen   86 SNEPVLALLQSCDKCIQCAAGEALGNLAVN--MENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLAT-FDSNKV  161 (550)
T ss_pred             hhhHHHHHHhCcchhhhhhhhhhhccceec--cCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhc-cccchh
Confidence            356677889999999999999999998876  455556677788888887777777 6999999999999998 588999


Q ss_pred             HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 043676           83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK  162 (446)
Q Consensus        83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  162 (446)
                      .+...|++.++.++-++.+..++.++..+|.|+.. ..+.|..++..|+++.++.++ ++.+..++..++.++++++-+.
T Consensus       162 kiA~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnIaVd~  239 (550)
T KOG4224|consen  162 KIARSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNIAVDR  239 (550)
T ss_pred             hhhhccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhhhhhH
Confidence            99999999999998888999999999999999994 455788999999999999999 8899999999999999999887


Q ss_pred             CCCChhhhh--hhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHH
Q 043676          163 PEPPFDQVR--PALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN  240 (446)
Q Consensus       163 ~~~~~~~~~--~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~  240 (446)
                      ..+......  ..+|.|+.++.+++++++-.+..++++++.... ....+++.|.+|.++++++++.-+.......|+.|
T Consensus       240 ~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrn  318 (550)
T KOG4224|consen  240 RARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELLQSPMGPLILASVACIRN  318 (550)
T ss_pred             HHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhh
Confidence            555555554  499999999999999999999999999998765 45569999999999999999888888999999999


Q ss_pred             hhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHH
Q 043676          241 IVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAA  320 (446)
Q Consensus       241 l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~  320 (446)
                      ++-+.- +.-.+.+.|++.+++.+|....+.+++-.|..+|.|++..+......+.+.|.+|.++.++.++...++...-
T Consensus       319 isihpl-Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseis  397 (550)
T KOG4224|consen  319 ISIHPL-NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEIS  397 (550)
T ss_pred             cccccC-cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHH
Confidence            987543 3445779999999999999886777999999999999987888899999999999999999999999999999


Q ss_pred             HHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhh
Q 043676          321 WAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEA  375 (446)
Q Consensus       321 ~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~  375 (446)
                      .++..++..  ......+.+.|.++.|+.+..+.+.+++.++..+|.|+...-+.
T Consensus       398 ac~a~Lal~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~  450 (550)
T KOG4224|consen  398 ACIAQLALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEH  450 (550)
T ss_pred             HHHHHHHhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHH
Confidence            999998874  56678889999999999999999999999999999998765544

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-32  Score=229.06  Aligned_cols=364  Identities=20%  Similarity=0.287  Sum_probs=318.2

Q ss_pred             CCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhh
Q 043676            1 LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSEN   80 (446)
Q Consensus         1 ~~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~   80 (446)
                      ++++..|+..+.++...+|..+..++.+++..  .++...+...|++.++.++-++.+ ..+|..+..+|.++.. ..++
T Consensus       125 l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmTh-s~En  200 (550)
T KOG4224|consen  125 LLGLDLLILQMMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTH-SREN  200 (550)
T ss_pred             ccChHHHHHHhcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhh-hhhh
Confidence            45677788878888888999999999999988  566777889999999999877777 8999999999999998 8899


Q ss_pred             HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcC--ChHHHHHHhccccchhHHHHHHHHHHHh
Q 043676           81 TNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQG--ALIPLLAELNEHAKLSMLRNATRTLSNF  158 (446)
Q Consensus        81 ~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~--~i~~l~~~l~~~~~~~~~~~a~~~L~~l  158 (446)
                      |+.++..|+++.|+.++++.+.++++.|+.+++|++-+ ...|..+.+.+  .++.++.++ +++++.++..+..+|.++
T Consensus       201 Rr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrnl  278 (550)
T KOG4224|consen  201 RRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRNL  278 (550)
T ss_pred             hhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999954 44677888888  899999999 888999999999999999


Q ss_pred             hcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCcc-chhHHHHH
Q 043676          159 CRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPS-VLTPALRT  237 (446)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~-~~~~a~~~  237 (446)
                      +.+..........|.+|.++++++++..+.......|+.|++.++-.. ..+.+.|++.+|+.+|+..+.+ ++..|..+
T Consensus       279 asdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe-~lI~dagfl~pLVrlL~~~dnEeiqchAvst  357 (550)
T KOG4224|consen  279 ASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNE-VLIADAGFLRPLVRLLRAGDNEEIQCHAVST  357 (550)
T ss_pred             cccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcc-cceecccchhHHHHHHhcCCchhhhhhHHHH
Confidence            999877777777899999999999998888888889999999876543 3588899999999999996655 89999999


Q ss_pred             HHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHH
Q 043676          238 VGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKK  317 (446)
Q Consensus       238 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~  317 (446)
                      |+||+.........+.++|.++.+..++.+. +..++.+...+++.++.. ...+..+.+.|+++.|+.++.+.+.+++.
T Consensus       358 LrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev~g  435 (550)
T KOG4224|consen  358 LRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESEEVRG  435 (550)
T ss_pred             HHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccchhhcc
Confidence            9999998888888899999999999999999 899999999999999754 55668899999999999999999999999


Q ss_pred             HHHHHHHHhccCCCHHHHHHHHH------cCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhh
Q 043676          318 EAAWAISNATSGGTQEQIKHLVR------EGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEA  375 (446)
Q Consensus       318 ~a~~aL~~l~~~~~~~~~~~l~~------~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~  375 (446)
                      +|+.+|.|++.  +.++...+++      .|.-..|..++.+.+..++..+.|.+.+++..+..
T Consensus       436 NaAaAL~Nlss--~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~~  497 (550)
T KOG4224|consen  436 NAAAALINLSS--DVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDHDL  497 (550)
T ss_pred             cHHHHHHhhhh--hhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999987  4555555555      24455688888888889999999999888865443

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.97  E-value=7.2e-27  Score=219.73  Aligned_cols=379  Identities=22%  Similarity=0.201  Sum_probs=316.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHH
Q 043676           16 NSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVK   95 (446)
Q Consensus        16 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~   95 (446)
                      ..+.+.+...|.|++..  ......+.+.|+++.|+++|++++ .++...++..|.+++. ..+++..+.+.|+++.|.+
T Consensus       263 eqLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~k  338 (708)
T PF05804_consen  263 EQLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLK  338 (708)
T ss_pred             HHHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHH
Confidence            34455778889998886  566677889999999999999998 8999999999999998 7889999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHH
Q 043676           96 LLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALP  175 (446)
Q Consensus        96 ~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~  175 (446)
                      ++.+++.+++..++++|.|++.+ +..|..+.+.|++|.++.++.   ++..+..++.+|++++.+...+.....++++|
T Consensus       339 Ll~s~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~---d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp  414 (708)
T PF05804_consen  339 LLPSENEDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELLK---DPNFREVALKILYNLSMDDEARSMFAYTDCIP  414 (708)
T ss_pred             HhcCCCHHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhC---CCchHHHHHHHHHHhccCHhhHHHHhhcchHH
Confidence            99999999999999999999954 557999999999999999993   34566779999999999987777777889999


Q ss_pred             HHHHhhcC-CCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHh
Q 043676          176 ALAQLVHS-NDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIIN  254 (446)
Q Consensus       176 ~l~~ll~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~  254 (446)
                      .++.++-+ +++.+...++..+.|++.... ..+.+.+.++++.|+...-....   ...+..+.|++.+.+.....+. 
T Consensus       415 ~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r-naqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f~-  489 (708)
T PF05804_consen  415 QLMQMLLENSEEEVQLELIALLINLALNKR-NAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELFV-  489 (708)
T ss_pred             HHHHHHHhCCCccccHHHHHHHHHHhcCHH-HHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHHH-
Confidence            99987654 567777888899999998765 55678888889998887655332   2355789999998765554443 


Q ss_pred             cCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--CcchHHHHHHHHHHhccCCCH
Q 043676          255 HGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA--EFDTKKEAAWAISNATSGGTQ  332 (446)
Q Consensus       255 ~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~  332 (446)
                       +++..++..+..+.+++...+++++|+|+...+......+.+.+++|.+.+++..+  ++++.-+++..++.++.  ++
T Consensus       490 -~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~--d~  566 (708)
T PF05804_consen  490 -DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS--DP  566 (708)
T ss_pred             -HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC--CH
Confidence             47888888888776889999999999999866555545555789999999999865  56789999999999987  67


Q ss_pred             HHHHHHHHcCChHHHHhcccC--CCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCC
Q 043676          333 EQIKHLVREGCVKPLCDLLLC--SDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDN  410 (446)
Q Consensus       333 ~~~~~l~~~~~i~~L~~ll~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~  410 (446)
                      .....+.+.|+++.|++++..  .|.++....+.++++++...+..             ...+.+.+....+..++++.|
T Consensus       567 ~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr-------------~~ll~~~~~~~ylidL~~d~N  633 (708)
T PF05804_consen  567 ECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETR-------------EVLLKETEIPAYLIDLMHDKN  633 (708)
T ss_pred             HHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHH-------------HHHHhccchHHHHHHHhcCCC
Confidence            888888899999999999965  46788899999999999887664             466788899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 043676          411 NEIHEKSVKIFKT  423 (446)
Q Consensus       411 ~~v~~~a~~~l~~  423 (446)
                      +++++.+..++.-
T Consensus       634 ~~ir~~~d~~Ldi  646 (708)
T PF05804_consen  634 AEIRKVCDNALDI  646 (708)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999887766653

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.96  E-value=1e-25  Score=212.01  Aligned_cols=361  Identities=19%  Similarity=0.248  Sum_probs=302.7

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhH
Q 043676            2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENT   81 (446)
Q Consensus         2 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~   81 (446)
                      |.++.|++.|.+++..+...++.+|.+++..  .++...+.+.|+++.|.+++.+++ .+++..++++|.|++. +++.|
T Consensus       290 ~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSf-d~~~R  365 (708)
T PF05804_consen  290 GIVSLLVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSF-DPELR  365 (708)
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCc-CHHHH
Confidence            6799999999999999999999999998876  577889999999999999999998 8999999999999999 89999


Q ss_pred             HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676           82 NVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG  161 (446)
Q Consensus        82 ~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  161 (446)
                      ..+++.|++|.|+.+|.++  ..+..++.+|++++.+. +.+..+...++++.+++++...+++.+...+++.+.|++.+
T Consensus       366 ~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd-~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~  442 (708)
T PF05804_consen  366 SQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDD-EARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN  442 (708)
T ss_pred             HHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCH-hhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence            9999999999999999864  46677999999999644 57888888999999999987777888888899999999999


Q ss_pred             CCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCccchhHHHHHHHH
Q 043676          162 KPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLTPALRTVGN  240 (446)
Q Consensus       162 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~~a~~~l~~  240 (446)
                      ..+.......++++.|+...-....   ...+..+.|++.+++.....+.  +++..|+.++.. .+++....++++|+|
T Consensus       443 ~rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaN  517 (708)
T PF05804_consen  443 KRNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILAN  517 (708)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHh
Confidence            8666666666778888776544322   2245689999998754444333  678888888877 456778889999999


Q ss_pred             hhcCCchhhHHHHhcCChHHHHHHhccC-chHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--CcchHH
Q 043676          241 IVTGDDFQTQCIINHGAVPYLLDMLVHN-HEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA--EFDTKK  317 (446)
Q Consensus       241 l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~  317 (446)
                      +...+......+-+.+++|.+...|..+ .++++..+++..++.++. ++.....+.+.|+++.|+.+++..  |.++..
T Consensus       518 L~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~Vl  596 (708)
T PF05804_consen  518 LTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVL  596 (708)
T ss_pred             cccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHH
Confidence            9986666666666789999999999754 245788999999998875 577778888999999999999875  688999


Q ss_pred             HHHHHHHHhccCCCHHHHHHHH-HcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhh
Q 043676          318 EAAWAISNATSGGTQEQIKHLV-REGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAER  377 (446)
Q Consensus       318 ~a~~aL~~l~~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~  377 (446)
                      +.++++..+..+  ++.+..++ +.+++..|++++++++++++..|-.+|.-+.+.++...
T Consensus       597 Qil~~f~~ll~h--~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~  655 (708)
T PF05804_consen  597 QILYVFYQLLFH--EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWA  655 (708)
T ss_pred             HHHHHHHHHHcC--hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence            999999999986  45566664 47889999999999999999999999999888877654

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.88  E-value=4.1e-21  Score=176.81  Aligned_cols=399  Identities=20%  Similarity=0.243  Sum_probs=293.2

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChh--h
Q 043676            3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSE--N   80 (446)
Q Consensus         3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~--~   80 (446)
                      .+|..+.+|.+.++.+|-.|+..+..++.++ +.-...+.+.|+++.|+.++.+++ .+++.+|+++|.|+..+...  +
T Consensus       234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~N  311 (717)
T KOG1048|consen  234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDSN  311 (717)
T ss_pred             ccHHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCccc
Confidence            4678899999999999999999999887775 555667788899999999999999 89999999999999985544  8


Q ss_pred             HHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcc-------------ccchh
Q 043676           81 TNVVIDHGAVPIFVKLLSS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE-------------HAKLS  146 (446)
Q Consensus        81 ~~~~~~~~~i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-------------~~~~~  146 (446)
                      +..+.+.++++.++++|+. .|.++++.+..+|+||++. +.++..++.. .+..|......             ..+.+
T Consensus       312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~  389 (717)
T KOG1048|consen  312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDST  389 (717)
T ss_pred             chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccce
Confidence            8899999999999999997 8999999999999999966 4455555443 45555544321             11367


Q ss_pred             HHHHHHHHHHHhhcCC--CCCChhhhhhhHHHHHHhhc------CCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHH
Q 043676          147 MLRNATRTLSNFCRGK--PEPPFDQVRPALPALAQLVH------SNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPR  218 (446)
Q Consensus       147 ~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~l~~ll~------~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  218 (446)
                      +..++..||.|++...  ....+-...|.+..|+..++      ..|.+..+++...+.|++..-....        -+.
T Consensus       390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Ev--------p~~  461 (717)
T KOG1048|consen  390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEV--------PPK  461 (717)
T ss_pred             eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhc--------CHh
Confidence            8899999999999865  33444455789999988887      2378888999999999985432111        111


Q ss_pred             HHHhcCCCC----ccchhHHHHHHHHhhcC---------------CchhhHHHHhcCChHHHHHHhccCchHHHHHHHHH
Q 043676          219 LVELLGHPS----PSVLTPALRTVGNIVTG---------------DDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISW  279 (446)
Q Consensus       219 l~~ll~~~~----~~~~~~a~~~l~~l~~~---------------~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~  279 (446)
                      ....+...+    ..-......|++.-...               .+.....+.+..++...+.++....+..+.+.++.
T Consensus       462 ~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaG  541 (717)
T KOG1048|consen  462 YRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAG  541 (717)
T ss_pred             hhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhh
Confidence            111111100    00000223333333222               12222334455567776667765557889999999


Q ss_pred             HHHHHhcCC----HHHHHHH-HHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCC
Q 043676          280 IISNITAGN----REQIQAV-IDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCS  354 (446)
Q Consensus       280 ~l~~l~~~~----~~~~~~~-~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~  354 (446)
                      +|-|++.+.    ......+ .+..+++.++++++.+++.+.+.++.+|.|++..  ..+... +-.++++.|++.|...
T Consensus       542 aLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d--~rnk~l-igk~a~~~lv~~Lp~~  618 (717)
T KOG1048|consen  542 ALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD--IRNKEL-IGKYAIPDLVRCLPGS  618 (717)
T ss_pred             hHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC--chhhhh-hhcchHHHHHHhCcCC
Confidence            999998742    2333334 5678999999999999999999999999999984  455444 4578999999999653


Q ss_pred             ------CHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCC-CHHHHHHHHHHHHHhcCC
Q 043676          355 ------DPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHD-NNEIHEKSVKIFKTYWCG  427 (446)
Q Consensus       355 ------~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~~~~~  427 (446)
                            +.++...++..|.+++......             .+.+.+.+|+++|..+..+. +++..+.|...+..+|..
T Consensus       619 ~~~~~~sedtv~~vc~tl~niv~~~~~n-------------Akdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y  685 (717)
T KOG1048|consen  619 GPSTSLSEDTVRAVCHTLNNIVRKNVLN-------------AKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQY  685 (717)
T ss_pred             CCCcCchHHHHHHHHHhHHHHHHHhHHH-------------HHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence                  3578889999999999765554             57777899999999886554 568888888888888765


Q ss_pred             CC
Q 043676          428 RN  429 (446)
Q Consensus       428 ~~  429 (446)
                      .|
T Consensus       686 ~e  687 (717)
T KOG1048|consen  686 KE  687 (717)
T ss_pred             HH
Confidence            43

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=2.8e-19  Score=164.44  Aligned_cols=389  Identities=21%  Similarity=0.283  Sum_probs=310.5

Q ss_pred             hHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676            4 FPALVAGVWSD-DNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN   82 (446)
Q Consensus         4 i~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~   82 (446)
                      +..|++.|+.+ |+..|++|+.-|+.++.-.+.+....+.-..++|.|+.+|++..+.++...|+++|.+++.--|+...
T Consensus       169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a  248 (1051)
T KOG0168|consen  169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA  248 (1051)
T ss_pred             HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence            56788888876 99999999999999888765555556666678999999999988899999999999999998899999


Q ss_pred             HHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676           83 VVIDHGAVPIFVKLLSS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG  161 (446)
Q Consensus        83 ~~~~~~~i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  161 (446)
                      .+++.++|+.|+.-|.. ...++.++++.+|-.|++..+.   .+.+.|++...+..+ +.-+...++.|+.+..|+|..
T Consensus       249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Cks  324 (1051)
T KOG0168|consen  249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCKS  324 (1051)
T ss_pred             eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999987665 7799999999999999987764   688999999999999 677889999999999999999


Q ss_pred             CCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhcc---CCcHHHHHHHHhCcHHHHHHhcCCCCc----cchhHH
Q 043676          162 KPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLAD---GTNDKIQAVIEAGVCPRLVELLGHPSP----SVLTPA  234 (446)
Q Consensus       162 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~---~~~~~~~~~~~~~~~~~l~~ll~~~~~----~~~~~a  234 (446)
                      -+...+....+.+|.|..+|+..|.+..+.++-|+..++.   +.++..+.+...|++....+++.-...    .+....
T Consensus       325 i~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~v  404 (1051)
T KOG0168|consen  325 IRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGV  404 (1051)
T ss_pred             CCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHH
Confidence            8888888889999999999999999999999999999884   466777888889999999999876532    344556


Q ss_pred             HHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCch--------------HHHHHHH-----------------------
Q 043676          235 LRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHE--------------EIIKKEI-----------------------  277 (446)
Q Consensus       235 ~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--------------~~v~~~a-----------------------  277 (446)
                      ...+..++++++.....+.+.++...+..+|.....              .++-+-.                       
T Consensus       405 Irmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~  484 (1051)
T KOG0168|consen  405 IRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLI  484 (1051)
T ss_pred             HHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhh
Confidence            777888888888877778888887777777643210              0000000                       


Q ss_pred             ----------------------------HHHHH-------------HH---------hcCCHHHHHHHHHcCChHHHHHH
Q 043676          278 ----------------------------SWIIS-------------NI---------TAGNREQIQAVIDAGLIRPIVNL  307 (446)
Q Consensus       278 ----------------------------~~~l~-------------~l---------~~~~~~~~~~~~~~~~i~~L~~l  307 (446)
                                                  .+.+.             +.         ....++..+.+.+ .++|.|++.
T Consensus       485 ~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLveV  563 (1051)
T KOG0168|consen  485 YEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVEV  563 (1051)
T ss_pred             cccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHHH
Confidence                                        01111             00         0011222233333 478888888


Q ss_pred             HhcC-CcchHHHHHHHHHHhccCCCHHHHHHHHH-cCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCc
Q 043676          308 LQNA-EFDTKKEAAWAISNATSGGTQEQIKHLVR-EGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGD  385 (446)
Q Consensus       308 l~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~  385 (446)
                      +.+. ++.||..++.||..+....+.+.+..++. ..+-..+..++.+++..+..-++....-+++.-++-         
T Consensus       564 YsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~---------  634 (1051)
T KOG0168|consen  564 YSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDT---------  634 (1051)
T ss_pred             HhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHH---------
Confidence            8765 89999999999999988888887777654 456677888999999999999999888888765554         


Q ss_pred             cchHHHHHHHhChHHHHHHhhcCC
Q 043676          386 VNQYAQFVEEAGGLEKIENLQSHD  409 (446)
Q Consensus       386 ~~~~~~~l~~~~~~~~l~~l~~~~  409 (446)
                         |...|.+.|.+..+++|....
T Consensus       635 ---F~~~F~REGV~~~v~~L~~~~  655 (1051)
T KOG0168|consen  635 ---FSPSFRREGVFHAVKQLSVDS  655 (1051)
T ss_pred             ---hhhhHhhhhHHHHHHHHhccC
Confidence               789999999999999997743

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.83  E-value=1.6e-16  Score=148.82  Aligned_cols=398  Identities=18%  Similarity=0.166  Sum_probs=293.7

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHH
Q 043676            6 ALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVI   85 (446)
Q Consensus         6 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~   85 (446)
                      .+...|.+.+.+....++.+|..+....  .... . ..+..+.|...|.+++ +.+|..+++.++++..++......+.
T Consensus        42 ~lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~~~-l-~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~~  116 (503)
T PF10508_consen   42 VLFDCLNTSNREQVELICDILKRLLSAL--SPDS-L-LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLLV  116 (503)
T ss_pred             HHHHHHhhcChHHHHHHHHHHHHHHhcc--CHHH-H-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence            3566788777777778888888877753  2222 2 4567899999999999 89999999999999987777778888


Q ss_pred             hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CC
Q 043676           86 DHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK-PE  164 (446)
Q Consensus        86 ~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~  164 (446)
                      +.++++.++.++.+++..+...|+.+|.+++...+.. +.++..+.+..|..++ ...+..++..+..++.+++..+ ..
T Consensus       117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~~  194 (503)
T PF10508_consen  117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPEA  194 (503)
T ss_pred             CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHHH
Confidence            8999999999999999999999999999999766544 4566777788888888 5557788889999999998876 33


Q ss_pred             CChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccc-----h-hHHHHHH
Q 043676          165 PPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSV-----L-TPALRTV  238 (446)
Q Consensus       165 ~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~-----~-~~a~~~l  238 (446)
                      .......|+++.++..+.++|.-++..++.++..++. .+...+.+.+.|+++.|..++.+.+.+-     . ...+...
T Consensus       195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~  273 (503)
T PF10508_consen  195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF  273 (503)
T ss_pred             HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence            3444457899999999999999999999999999999 4556777899999999999998743222     2 2234667


Q ss_pred             HHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHH-HHcC-C----hHHHHHHHhcCC
Q 043676          239 GNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAV-IDAG-L----IRPIVNLLQNAE  312 (446)
Q Consensus       239 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~-~~~~-~----i~~L~~ll~~~~  312 (446)
                      ++++...+....... ..++..+.+++.+. +...+..|..+++.++. +.+....+ .+.+ .    +........++.
T Consensus       274 g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igs-t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~  350 (503)
T PF10508_consen  274 GNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGS-TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGS  350 (503)
T ss_pred             HHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhC-CHHHHHHHHhhcchHHHHHHHHHHHHhcCCc
Confidence            777775443332211 23556667777777 89999999999999975 45666666 4332 3    444444555667


Q ss_pred             cchHHHHHHHHHHhccCCCH---HHHHHH-------HHcCChH-HHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccC
Q 043676          313 FDTKKEAAWAISNATSGGTQ---EQIKHL-------VREGCVK-PLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGT  381 (446)
Q Consensus       313 ~~v~~~a~~aL~~l~~~~~~---~~~~~l-------~~~~~i~-~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  381 (446)
                      .++|..++.++.++.....+   +....+       ...+... .+..+++.+=|+++..++..+..++...-.      
T Consensus       351 ~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg------  424 (503)
T PF10508_consen  351 TELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWG------  424 (503)
T ss_pred             hHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHH------
Confidence            78999999999999654332   111111       1223344 778888888899999999999998876433      


Q ss_pred             CCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 043676          382 TIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCG  427 (446)
Q Consensus       382 ~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  427 (446)
                             ........|.++.+-+=....+.+.++.=-.++..+...
T Consensus       425 -------~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~  463 (503)
T PF10508_consen  425 -------QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKS  463 (503)
T ss_pred             -------HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence                   245666666666654444445666666656666666533

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.82  E-value=1.2e-16  Score=149.69  Aligned_cols=366  Identities=17%  Similarity=0.192  Sum_probs=277.7

Q ss_pred             HHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHH
Q 043676           48 PRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVL  127 (446)
Q Consensus        48 ~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~  127 (446)
                      +.+...+++.+ .+....++.+|..+.. .......  ..+..+.|...|.++++.+|..+++.+.++...+......+.
T Consensus        41 ~~lf~~L~~~~-~e~v~~~~~iL~~~l~-~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~  116 (503)
T PF10508_consen   41 PVLFDCLNTSN-REQVELICDILKRLLS-ALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV  116 (503)
T ss_pred             HHHHHHHhhcC-hHHHHHHHHHHHHHHh-ccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence            34778888877 6777888889999887 2222222  346679999999999999999999999999988877777888


Q ss_pred             HcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHH
Q 043676          128 SQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKI  207 (446)
Q Consensus       128 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~  207 (446)
                      +.+.++.++..+ .+++..+...|+.+|..++...+........+..+.|..++...++.+|..++.++.+++..+++..
T Consensus       117 ~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~  195 (503)
T PF10508_consen  117 DNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA  195 (503)
T ss_pred             CccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence            899999999999 8899999999999999999886544444456668999999998888999999999999999999999


Q ss_pred             HHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHH-----HHHHHHHHHH
Q 043676          208 QAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEI-----IKKEISWIIS  282 (446)
Q Consensus       208 ~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----v~~~a~~~l~  282 (446)
                      ..+.+.|+++.++..++++|.-++..++.++..++. .+...+.+.+.|+++.+..++.+.....     .-...+...+
T Consensus       196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g  274 (503)
T PF10508_consen  196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG  274 (503)
T ss_pred             HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence            888999999999999999888899999999999999 6677888899999999999997652222     1223345666


Q ss_pred             HHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHH-HHcC-----ChHHHHhcccCCCH
Q 043676          283 NITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHL-VREG-----CVKPLCDLLLCSDP  356 (446)
Q Consensus       283 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l-~~~~-----~i~~L~~ll~~~~~  356 (446)
                      +++...+....... ..++..+.+++.+.|+..+..|..+++.++.  ..+....+ ...+     ++..+.....+...
T Consensus       275 ~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs--t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~  351 (503)
T PF10508_consen  275 NLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGS--TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGST  351 (503)
T ss_pred             HHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhC--CHHHHHHHHhhcchHHHHHHHHHHHHhcCCch
Confidence            77654343332222 2466677788888999999999999999986  45666555 2221     35555555667788


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhC--hHH-HHHHhhcCCCHHHHHHHHHHHHHhcC
Q 043676          357 EIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAG--GLE-KIENLQSHDNNEIHEKSVKIFKTYWC  426 (446)
Q Consensus       357 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~-~l~~l~~~~~~~v~~~a~~~l~~~~~  426 (446)
                      +++.+++.++.+++...+.....    ...+.....+...+  ... .+..+...+-++++-.+..++..+..
T Consensus       352 ~lk~r~l~al~~il~~~~~~~~~----~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~  420 (503)
T PF10508_consen  352 ELKLRALHALASILTSGTDRQDN----DILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAA  420 (503)
T ss_pred             HHHHHHHHHHHHHHhcCCCCchH----HHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence            99999999999998766541100    00011112222222  223 56777888889999888888776643

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.79  E-value=3.1e-16  Score=134.37  Aligned_cols=403  Identities=12%  Similarity=0.044  Sum_probs=295.8

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCC------CChHHHHHHHHHHHHHcCC
Q 043676            3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRE------DYPQLQYEAAWVLINIASG   76 (446)
Q Consensus         3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~------~~~~~~~~a~~~L~~l~~~   76 (446)
                      .++.|.+...|++..+-.+..++|.|++..+ ++.+..+.+.|+-..+++.|+.-      ...+.-..+...|.|..-+
T Consensus        88 ~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~  166 (604)
T KOG4500|consen   88 ALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILD  166 (604)
T ss_pred             HHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCC
Confidence            4667788888999999999999999998876 78888999999977777777642      2245666677889999988


Q ss_pred             ChhhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCC-hHHHHHHHHcCChHHHHHHhccccchhHHHHHHH
Q 043676           77 TSENTNVVIDHGAVPIFVKLLSS--PSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAELNEHAKLSMLRNATR  153 (446)
Q Consensus        77 ~~~~~~~~~~~~~i~~L~~~L~~--~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~  153 (446)
                      +.+.+...++.|+++.|...+.-  .+....+..+....|+.+.- +...+...+......+++++.....+++.+.+..
T Consensus       167 ~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~fe  246 (604)
T KOG4500|consen  167 SRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFE  246 (604)
T ss_pred             cHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHH
Confidence            99999999999999999988754  56666666666666665322 2233445555667788888877778899999999


Q ss_pred             HHHHhhcCCCCCChhhhhhhHHHHHHhhcC-CC-------HhHHHHHHHHHHHhccCCcHHHHHHHHhC-cHHHHHHhcC
Q 043676          154 TLSNFCRGKPEPPFDQVRPALPALAQLVHS-ND-------EDVLTYACWSLSYLADGTNDKIQAVIEAG-VCPRLVELLG  224 (446)
Q Consensus       154 ~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~-~~-------~~v~~~~~~~l~~l~~~~~~~~~~~~~~~-~~~~l~~ll~  224 (446)
                      .|...++++...-.....|.+..+..+++. .+       -.....++..+.-+..+++ ..+.+...+ +++.+...+.
T Consensus       247 ila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDe-SMq~L~~~p~~l~~~~sw~~  325 (604)
T KOG4500|consen  247 ILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDE-SMQKLHADPQFLDFLESWFR  325 (604)
T ss_pred             HHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCch-HHHHHhcCcHHHHHHHHHhc
Confidence            999999987555555667888888888875 21       2223334444444444444 445566655 8999999999


Q ss_pred             CCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccC----chHHHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 043676          225 HPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHN----HEEIIKKEISWIISNITAGNREQIQAVIDAGL  300 (446)
Q Consensus       225 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~  300 (446)
                      +++......+.-+++|+++.+ .....+++.+++..+++++...    .+.+++..++.+|.|+.- +..+...++..|+
T Consensus       326 S~d~~l~t~g~LaigNfaR~D-~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I-Pv~nka~~~~aGv  403 (604)
T KOG4500|consen  326 SDDSNLITMGSLAIGNFARRD-DICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI-PVSNKAHFAPAGV  403 (604)
T ss_pred             CCchhHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc-cCCchhhccccch
Confidence            999999999999999999954 5666788999999999998541    156788889999999965 3445567888999


Q ss_pred             hHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHH-HcCChHHHHhcccCCCHH-HHHHHHHHHHHHHHhhhhhhc
Q 043676          301 IRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLV-REGCVKPLCDLLLCSDPE-IVTVCLIGLENILKVGEAERN  378 (446)
Q Consensus       301 i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~-~~~~~~~~l~~l~~~~~~~~~  378 (446)
                      .+.++..++...|++...-+..+.-+.... +-....+. ....++.|++--+++|.. +.-.....+.-+++....   
T Consensus       404 teaIL~~lk~~~ppv~fkllgTlrM~~d~q-e~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~---  479 (604)
T KOG4500|consen  404 TEAILLQLKLASPPVTFKLLGTLRMIRDSQ-EYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKY---  479 (604)
T ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHhch-HHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHh---
Confidence            999999999999999999888888765532 21222222 223466666666666654 666666777776665333   


Q ss_pred             ccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHH
Q 043676          379 MGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF  421 (446)
Q Consensus       379 ~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l  421 (446)
                              ++....+-++||++....+....+-.++..|...+
T Consensus       480 --------kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal  514 (604)
T KOG4500|consen  480 --------KDVILTVPKSGGIKEKVSMFTKNHINMQNEALVAL  514 (604)
T ss_pred             --------hhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHH
Confidence                    22467777899999988888888777777665444

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.78  E-value=1.3e-16  Score=154.32  Aligned_cols=362  Identities=18%  Similarity=0.187  Sum_probs=275.4

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCC--ChHHHHHHHHHHHHHcCCChhhHHHH
Q 043676            7 LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRED--YPQLQYEAAWVLINIASGTSENTNVV   84 (446)
Q Consensus         7 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~   84 (446)
                      +..++...|.   ....+.|..+.+.  .+.+..+...|.++.|++++.-++  ..+.+..|-.+|.||....++.+..-
T Consensus       202 llsml~t~D~---ee~ar~fLemSss--~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~R  276 (2195)
T KOG2122|consen  202 LLSMLGTDDE---EEMARTFLEMSSS--PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGR  276 (2195)
T ss_pred             HhhhcccCCH---HHHHHHHHHhccC--chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhH
Confidence            4445555554   3344555555554  566778889999999999998655  25788889999999998666544333


Q ss_pred             HhcCChHHHHH----------hhCC-------CCHHHHH-HHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccc----
Q 043676           85 IDHGAVPIFVK----------LLSS-------PSDDVRE-QAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEH----  142 (446)
Q Consensus        85 ~~~~~i~~L~~----------~L~~-------~~~~v~~-~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~----  142 (446)
                      .+..++..|-+          .+..       ...+-+. .|+.+|..++ ..+++|..+.+.|++..+-.++..+    
T Consensus       277 RE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~S-FDEEhR~aM~ELG~LqAIaeLl~vDh~mh  355 (2195)
T KOG2122|consen  277 REKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLS-FDEEHRHAMNELGGLQAIAELLQVDHEMH  355 (2195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhh-ccHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence            33233333221          1221       1122233 6666777777 5677899999999999998877321    


Q ss_pred             -------cchhHHHHHHHHHHHhhcCC--CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHH-HHH
Q 043676          143 -------AKLSMLRNATRTLSNFCRGK--PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQA-VIE  212 (446)
Q Consensus       143 -------~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~-~~~  212 (446)
                             ....+++++..+|.||..++  ......-..|++..++..|.+..+++..-...+|.||+...+..... +.+
T Consensus       356 gp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE  435 (2195)
T KOG2122|consen  356 GPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRE  435 (2195)
T ss_pred             CCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHh
Confidence                   13478999999999999887  23334445899999999999998899999999999999776655444 555


Q ss_pred             hCcHHHHHHhcCC-CCccchhHHHHHHHHhhcCCchhhHHHH-hcCChHHHHHHhccCc---hHHHHHHHHHHHHHHhc-
Q 043676          213 AGVCPRLVELLGH-PSPSVLTPALRTVGNIVTGDDFQTQCII-NHGAVPYLLDMLVHNH---EEIIKKEISWIISNITA-  286 (446)
Q Consensus       213 ~~~~~~l~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~~~~~l~~~l~~~~---~~~v~~~a~~~l~~l~~-  286 (446)
                      .|-+..|+...-. ..+......+.+||||+.++.++...+. -.|.+..|+.+|....   .-.+.+.+..+|.|+.. 
T Consensus       436 ~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~  515 (2195)
T KOG2122|consen  436 TGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSL  515 (2195)
T ss_pred             hhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhH
Confidence            6888888777544 5557788899999999998888777776 4688999999997542   34566778888888765 


Q ss_pred             --CCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHH
Q 043676          287 --GNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLI  364 (446)
Q Consensus       287 --~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~  364 (446)
                        .++..++.+.+++++..|+..|++.+..+..++|.+|+||+.. +++..+.|.+.|.++.|..++++++..+..-+..
T Consensus       516 IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR-~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaa  594 (2195)
T KOG2122|consen  516 IATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-SPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAA  594 (2195)
T ss_pred             hhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC-CHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHH
Confidence              4677778888999999999999999999999999999999887 5777788999999999999999999999999999


Q ss_pred             HHHHHHHhhhh
Q 043676          365 GLENILKVGEA  375 (446)
Q Consensus       365 ~l~~l~~~~~~  375 (446)
                      +|.|++.+-+.
T Consensus       595 ALrNLln~RPA  605 (2195)
T KOG2122|consen  595 ALRNLLNFRPA  605 (2195)
T ss_pred             HHHHHhcCCch
Confidence            99999887643

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.78  E-value=4.5e-17  Score=139.39  Aligned_cols=378  Identities=15%  Similarity=0.120  Sum_probs=268.0

Q ss_pred             CCHHHHHHHHHHHHHHhcCC--CCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChH
Q 043676           14 DDNSLQLEATTLSRKLLSFD--RNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVP   91 (446)
Q Consensus        14 ~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~   91 (446)
                      .+..++.....+++..+..+  ++..++.-++.+++..|.+...+++ .++..++.++|+|++..+.+.|..+.+.|+-.
T Consensus        54 ~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaq  132 (604)
T KOG4500|consen   54 ASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGAQ  132 (604)
T ss_pred             ccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCce
Confidence            34455666666666655432  1112333455677888888888887 79999999999999999999999999999988


Q ss_pred             HHHHhhCC-------CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcc-ccchhHHHHHHHHHHHhhcCC-
Q 043676           92 IFVKLLSS-------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE-HAKLSMLRNATRTLSNFCRGK-  162 (446)
Q Consensus        92 ~L~~~L~~-------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~~a~~~L~~l~~~~-  162 (446)
                      .+++.|+.       .+.+....+...+.|..-++.+.+..+.+.|+++++...+.- ..+...-+..+..+.++.+-. 
T Consensus       133 ivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~  212 (604)
T KOG4500|consen  133 IVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVC  212 (604)
T ss_pred             ehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHH
Confidence            88888764       234667778889999999999999999999999999887732 223333344333333332221 


Q ss_pred             -CCCChhhhhhhHHHHHHhhcCC-CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCccch-------h
Q 043676          163 -PEPPFDQVRPALPALAQLVHSN-DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH-PSPSVL-------T  232 (446)
Q Consensus       163 -~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~-------~  232 (446)
                       ..........+...+++++... .+++++.++..+...+.++.-. -.+.+.|.+..++.+++. ++..-+       .
T Consensus       213 e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vk-l~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k  291 (604)
T KOG4500|consen  213 EMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVK-LSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFK  291 (604)
T ss_pred             HhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCccee-eehhhcchHHHHHHHHHhcccccchHHHHHHHH
Confidence             0122333345566667777644 6788889999999988876643 347888999999999877 332222       2


Q ss_pred             HHHHHHHHhhcCCchhhHHHHhcC-ChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-
Q 043676          233 PALRTVGNIVTGDDFQTQCIINHG-AVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQN-  310 (446)
Q Consensus       233 ~a~~~l~~l~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-  310 (446)
                      .++..+.-+..+++ ..+.+...+ +++.+.+++.+. +....-.+..+++|+++.+. ...++++.+++..|++++.. 
T Consensus       292 ~~~el~vllltGDe-SMq~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~  368 (604)
T KOG4500|consen  292 RIAELDVLLLTGDE-SMQKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQE  368 (604)
T ss_pred             hhhhHhhhhhcCch-HHHHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHh
Confidence            23333333444443 334455444 899999999999 99999999999999987654 45667888999999998864 


Q ss_pred             ----CCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCcc
Q 043676          311 ----AEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDV  386 (446)
Q Consensus       311 ----~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~  386 (446)
                          ++.+++..++.||.|+...  ..+...+...|+.+.+..+++...|++...-+..+.-+....+..          
T Consensus       369 ~~vdgnV~~qhA~lsALRnl~IP--v~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~----------  436 (604)
T KOG4500|consen  369 KDVDGNVERQHACLSALRNLMIP--VSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYI----------  436 (604)
T ss_pred             cCCCccchhHHHHHHHHHhcccc--CCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHH----------
Confidence                4678899999999999873  456677889999999999999999999999888888766544422          


Q ss_pred             chHHHHHHHhChHHHHHHhhcCCC
Q 043676          387 NQYAQFVEEAGGLEKIENLQSHDN  410 (446)
Q Consensus       387 ~~~~~~l~~~~~~~~l~~l~~~~~  410 (446)
                        ..+....-..+++|.+.-.+++
T Consensus       437 --a~eL~kn~~l~ekLv~Wsks~D  458 (604)
T KOG4500|consen  437 --ACELAKNPELFEKLVDWSKSPD  458 (604)
T ss_pred             --HHHHhcCHHHHHHHHHhhhCCc
Confidence              1333333344555555555543

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=6.8e-16  Score=134.17  Aligned_cols=378  Identities=19%  Similarity=0.126  Sum_probs=289.3

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHH
Q 043676           15 DNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFV   94 (446)
Q Consensus        15 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~   94 (446)
                      ...+...|...|.+++..  ......+....++..|++.|+.++ .++.......|..++- -.+++..+.+.|++..|+
T Consensus       276 QeqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~  351 (791)
T KOG1222|consen  276 QEQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLL  351 (791)
T ss_pred             HHHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHH
Confidence            345566788888898876  344556778899999999999999 7999999999999987 678899999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhH
Q 043676           95 KLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPAL  174 (446)
Q Consensus        95 ~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  174 (446)
                      ++....+++++...+..+.|++.+.. .+..++..|.+|.+..++..+..   ..-|+..++.++.++....+.....++
T Consensus       352 klfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~---~~iA~~~lYh~S~dD~~K~MfayTdci  427 (791)
T KOG1222|consen  352 KLFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTK---HGIALNMLYHLSCDDDAKAMFAYTDCI  427 (791)
T ss_pred             HhcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCccc---chhhhhhhhhhccCcHHHHHHHHHHHH
Confidence            99999999999999999999996654 67889999999999999944332   345677888888888777778889999


Q ss_pred             HHHHHhhc-CCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh-cCCCCccchhHHHHHHHHhhcCCchhhHHH
Q 043676          175 PALAQLVH-SNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVEL-LGHPSPSVLTPALRTVGNIVTGDDFQTQCI  252 (446)
Q Consensus       175 ~~l~~ll~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~l-l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~  252 (446)
                      +.++..+- ..+.++-...+....|++-+.. +.+.+.+...+..|+.. ++..++    .-...+.|++.+.......+
T Consensus       428 ~~lmk~v~~~~~~~vdl~lia~ciNl~lnkR-NaQlvceGqgL~~LM~ra~k~~D~----lLmK~vRniSqHeg~tqn~F  502 (791)
T KOG1222|consen  428 KLLMKDVLSGTGSEVDLALIALCINLCLNKR-NAQLVCEGQGLDLLMERAIKSRDL----LLMKVVRNISQHEGATQNMF  502 (791)
T ss_pred             HHHHHHHHhcCCceecHHHHHHHHHHHhccc-cceEEecCcchHHHHHHHhcccch----HHHHHHHHhhhccchHHHHH
Confidence            99887654 4466666666666667776544 34446666666766654 333333    24567888888776666556


Q ss_pred             HhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--CcchHHHHHHHHHHhccCC
Q 043676          253 INHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA--EFDTKKEAAWAISNATSGG  330 (446)
Q Consensus       253 ~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~  330 (446)
                      ++  .+..+..+++...+...-.++.++++|+...+-+....+.+.+.+|-+-..++.+  ..++.-....+++.++.  
T Consensus       503 id--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~--  578 (791)
T KOG1222|consen  503 ID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR--  578 (791)
T ss_pred             HH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh--
Confidence            54  5677788887665778889999999999775555555566778999999888865  45677788888888887  


Q ss_pred             CHHHHHHHHHcCChHHHHhcccC--CCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcC
Q 043676          331 TQEQIKHLVREGCVKPLCDLLLC--SDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSH  408 (446)
Q Consensus       331 ~~~~~~~l~~~~~i~~L~~ll~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~  408 (446)
                      +......+...++++.++++|+.  .|.+.+...+..+.+++......             .-++.+...-..+..|+++
T Consensus       579 d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr-------------~~miket~~~AylIDLMHD  645 (791)
T KOG1222|consen  579 DLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTR-------------RLMIKETALGAYLIDLMHD  645 (791)
T ss_pred             hhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHH-------------HHHHhhccchHHHHHHHhc
Confidence            45666677788999999999965  45667777777788877764332             4677777778889999999


Q ss_pred             CCHHHHHHHHHHHH
Q 043676          409 DNNEIHEKSVKIFK  422 (446)
Q Consensus       409 ~~~~v~~~a~~~l~  422 (446)
                      .|.++++-+...+.
T Consensus       646 kN~eiRkVCDn~Ld  659 (791)
T KOG1222|consen  646 KNAEIRKVCDNALD  659 (791)
T ss_pred             ccHHHHHHHHHHHH
Confidence            99999876554443

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.77  E-value=8.7e-16  Score=127.48  Aligned_cols=312  Identities=12%  Similarity=0.119  Sum_probs=255.2

Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCC-CChHHHHHHHHHHHHHcCCChhhHHHHHhcCC
Q 043676           11 VWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRE-DYPQLQYEAAWVLINIASGTSENTNVVIDHGA   89 (446)
Q Consensus        11 l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~   89 (446)
                      -.+++..+...++.+|..+..+.     ..+.+..++..++.+|... +..++....+.++..-+..++.+|+.+++.++
T Consensus       116 a~~~~~~~l~ksL~al~~lt~~q-----pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~i  190 (461)
T KOG4199|consen  116 AESPNESVLKKSLEAINSLTHKQ-----PDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKI  190 (461)
T ss_pred             hhCCchhHHHHHHHHHHHhhcCC-----cchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhH
Confidence            34678888899999988776653     2356677899999988643 23688888889999988889999999999999


Q ss_pred             hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCh---------HHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 043676           90 VPIFVKLLSS-PSDDVREQAVWALGNVAGDSP---------RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFC  159 (446)
Q Consensus        90 i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~---------~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  159 (446)
                      ++.+...|.. ....+.+...|+++-+..+++         .....+...|++..|+..+.-.-++.+...++.+|..++
T Consensus       191 l~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lA  270 (461)
T KOG4199|consen  191 LELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALA  270 (461)
T ss_pred             HHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHH
Confidence            9999977765 344577788999998886543         345667788889999999976778999999999999998


Q ss_pred             cCCCCCChhhhhhhHHHHHHhhcCC-CHh---HHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC--CCccchhH
Q 043676          160 RGKPEPPFDQVRPALPALAQLVHSN-DED---VLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLTP  233 (446)
Q Consensus       160 ~~~~~~~~~~~~~~~~~l~~ll~~~-~~~---v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~--~~~~~~~~  233 (446)
                      -.......+...|++..+++++.+. +..   ....++..|..++.++. ....+++.|+.+.++.++..  .+|.+...
T Consensus       271 Vr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~Ds-vKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~  349 (461)
T KOG4199|consen  271 VRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDS-VKSTIVEKGGLDKIITLALRHSDDPLVIQE  349 (461)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCc-hHHHHHHhcChHHHHHHHHHcCCChHHHHH
Confidence            8776666677789999999999874 333   55678888888887766 45568888999999988765  67889999


Q ss_pred             HHHHHHHhhcCCchhhHHHHhcCChHHHHHHhc-cCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCC
Q 043676          234 ALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLV-HNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAE  312 (446)
Q Consensus       234 a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~  312 (446)
                      ++.+++-++-..|+....+++.|+-...++.++ ++....++..|+|.+.|++..+.++...++. .+++.|+...+..+
T Consensus       350 ~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~-~GiE~Li~~A~~~h  428 (461)
T KOG4199|consen  350 VMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLA-NGIEKLIRTAKANH  428 (461)
T ss_pred             HHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHh-ccHHHHHHHHHhcC
Confidence            999999999999999999999999999999886 4546789999999999999988888777777 56788888888889


Q ss_pred             cchHHHHHHHHHHhccC
Q 043676          313 FDTKKEAAWAISNATSG  329 (446)
Q Consensus       313 ~~v~~~a~~aL~~l~~~  329 (446)
                      +.....|-.+|..+-..
T Consensus       429 ~tce~~akaALRDLGc~  445 (461)
T KOG4199|consen  429 ETCEAAAKAALRDLGCD  445 (461)
T ss_pred             ccHHHHHHHHHHhcCcc
Confidence            99999999999988653

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=3.2e-15  Score=130.01  Aligned_cols=359  Identities=16%  Similarity=0.168  Sum_probs=278.7

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676            3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN   82 (446)
Q Consensus         3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~   82 (446)
                      .+..|++.|..++.++.......|.++.-.  .++...+.+.|++..|++++.... ++++...+..+.|++. +...+.
T Consensus       305 iV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSF-D~glr~  380 (791)
T KOG1222|consen  305 IVAMLVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSF-DSGLRP  380 (791)
T ss_pred             HHHHHHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccc-cccccH
Confidence            456788999999999999999999998776  567788999999999999999999 8999999999999998 788999


Q ss_pred             HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 043676           83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK  162 (446)
Q Consensus        83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  162 (446)
                      .++..|.+|.+..++.+..  -...|+..++.++.+. ..+..+....+++.+++.+....+.++-...+....|+|.+.
T Consensus       381 KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD-~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnk  457 (791)
T KOG1222|consen  381 KMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDD-DAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNK  457 (791)
T ss_pred             HHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCc-HHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcc
Confidence            9999999999999997643  3345677888888554 356677777889998888767777777777777778999888


Q ss_pred             CCCChhhhhhhHHHHHHh-hcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCccchhHHHHHHHH
Q 043676          163 PEPPFDQVRPALPALAQL-VHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLTPALRTVGN  240 (446)
Q Consensus       163 ~~~~~~~~~~~~~~l~~l-l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~~a~~~l~~  240 (446)
                      .+........++..|+.. ++..|+-    ....+.+++.+.......++  +.+..|...++. +++.....++++++|
T Consensus       458 RNaQlvceGqgL~~LM~ra~k~~D~l----LmK~vRniSqHeg~tqn~Fi--dyvgdLa~i~~nd~~E~F~~EClGtlan  531 (791)
T KOG1222|consen  458 RNAQLVCEGQGLDLLMERAIKSRDLL----LMKVVRNISQHEGATQNMFI--DYVGDLAGIAKNDNSESFGLECLGTLAN  531 (791)
T ss_pred             ccceEEecCcchHHHHHHHhcccchH----HHHHHHHhhhccchHHHHHH--HHHHHHHHHhhcCchHHHHHHHHHHHhh
Confidence            777777777777777654 4444543    34567888888765555455  456667777766 455567789999999


Q ss_pred             hhcCCchhhHHHHhcCChHHHHHHhccCc-hHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--CcchHH
Q 043676          241 IVTGDDFQTQCIINHGAVPYLLDMLVHNH-EEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA--EFDTKK  317 (446)
Q Consensus       241 l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~  317 (446)
                      |.-..-+....+-+.+++|.+-..|+.+. ..++....+-+++.++. .......+...++++.++++++..  +.+...
T Consensus       532 L~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~-d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~  610 (791)
T KOG1222|consen  532 LKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR-DLDCARLLAPAKLIDTLIELLQACQEDDEFVV  610 (791)
T ss_pred             cccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh-hhHHHHHhCccccHHHHHHHHHhhcccchHHH
Confidence            99877777777778899999999987642 34566666777777754 345555666789999999999874  678888


Q ss_pred             HHHHHHHHhccCCCHHHHHHHH-HcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhh
Q 043676          318 EAAWAISNATSGGTQEQIKHLV-REGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAER  377 (446)
Q Consensus       318 ~a~~aL~~l~~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~  377 (446)
                      ..+.+...+..+  +..+..++ +...-..+++++++.+.+++..|-.+|.-+...++...
T Consensus       611 QiiyVF~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWA  669 (791)
T KOG1222|consen  611 QIIYVFLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWA  669 (791)
T ss_pred             HHHHHHHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHH
Confidence            888888888875  34444444 45567789999999999999999999988877666554

>PRK09687 putative lyase; Provisional

Probab=99.74  E-value=5.9e-16  Score=133.04  Aligned_cols=256  Identities=15%  Similarity=0.113  Sum_probs=203.7

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHH
Q 043676           45 GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD  124 (446)
Q Consensus        45 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~  124 (446)
                      --++.|.++|.+++ ..++..|++.|..+..           ..+++.+..++.++++.+|..++++|+.+-.....   
T Consensus        23 ~~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---   87 (280)
T PRK09687         23 LNDDELFRLLDDHN-SLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---   87 (280)
T ss_pred             ccHHHHHHHHhCCC-HHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---
Confidence            35888999999999 8999999999998865           23578888899999999999999999998642211   


Q ss_pred             HHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCc
Q 043676          125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTN  204 (446)
Q Consensus       125 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~  204 (446)
                         ....++.|..++.+++++.++..++.+|++++......    ....++.+...+.++++.+|..++++|+.+..  +
T Consensus        88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~  158 (280)
T PRK09687         88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--E  158 (280)
T ss_pred             ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--H
Confidence               11245677777558889999999999999997554211    23456677788888899999999999986532  1


Q ss_pred             HHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHH
Q 043676          205 DKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNI  284 (446)
Q Consensus       205 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l  284 (446)
                               ..++.|+.++.++++.+|..|+.+|+.+...++         ..++.|+..+.+. +..||..|+++|+.+
T Consensus       159 ---------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~  219 (280)
T PRK09687        159 ---------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALR  219 (280)
T ss_pred             ---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHcc
Confidence                     467889999999999999999999999944333         2457789999988 999999999999987


Q ss_pred             hcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhccc-CCCHHHHHHHH
Q 043676          285 TAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLL-CSDPEIVTVCL  363 (446)
Q Consensus       285 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~~~  363 (446)
                        +++         ..++.|++.+++++  ++..++.+|+++..   +.         .++.|..+++ ++|+.++..+.
T Consensus       220 --~~~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~---~~---------a~p~L~~l~~~~~d~~v~~~a~  274 (280)
T PRK09687        220 --KDK---------RVLSVLIKELKKGT--VGDLIIEAAGELGD---KT---------LLPVLDTLLYKFDDNEIITKAI  274 (280)
T ss_pred             --CCh---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC---Hh---------HHHHHHHHHhhCCChhHHHHHH
Confidence              333         37899999998755  77889999999864   21         5788888886 78999999999


Q ss_pred             HHHHH
Q 043676          364 IGLEN  368 (446)
Q Consensus       364 ~~l~~  368 (446)
                      +++..
T Consensus       275 ~a~~~  279 (280)
T PRK09687        275 DKLKR  279 (280)
T ss_pred             HHHhc
Confidence            88764

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.73  E-value=7.1e-15  Score=122.16  Aligned_cols=318  Identities=16%  Similarity=0.192  Sum_probs=251.3

Q ss_pred             hcCCHHHHHHhh---cCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhC
Q 043676           43 QSGVVPRFVEFL---MREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSS--PSDDVREQAVWALGNVAG  117 (446)
Q Consensus        43 ~~~~~~~L~~ll---~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~--~~~~v~~~a~~~l~~l~~  117 (446)
                      ..|..+.++.++   .+++ ..+-..++.+|..+....|+    +.+..++..++++|..  ++.++....+..+..-|.
T Consensus       102 ~~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~  176 (461)
T KOG4199|consen  102 KNGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACI  176 (461)
T ss_pred             cCCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence            456666665544   3455 67888888898888875555    4556778999998865  667888888888888888


Q ss_pred             CChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC----------ChhhhhhhHHHHHHhhcCC-CH
Q 043676          118 DSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEP----------PFDQVRPALPALAQLVHSN-DE  186 (446)
Q Consensus       118 ~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~----------~~~~~~~~~~~l~~ll~~~-~~  186 (446)
                      .++.+|+.+++.++++.+...+..+....+.+.++|++..|..+++.+          ..+...+++..|+..++.. +|
T Consensus       177 ~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp  256 (461)
T KOG4199|consen  177 MHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP  256 (461)
T ss_pred             HhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence            888899999999999999988866666689999999999998776332          1223356778888888855 79


Q ss_pred             hHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC-Cccch---hHHHHHHHHhhcCCchhhHHHHhcCChHHHH
Q 043676          187 DVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHP-SPSVL---TPALRTVGNIVTGDDFQTQCIINHGAVPYLL  262 (446)
Q Consensus       187 ~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~~~---~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~  262 (446)
                      .+...++.+|..++-.++ ..+.+.+.|+++.++.++.+. +...|   ..++..|..++- ++.....+++.|+.+.++
T Consensus       257 ~~L~~l~~tl~~lAVr~E-~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii  334 (461)
T KOG4199|consen  257 DSLVSLSTTLKALAVRDE-ICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKII  334 (461)
T ss_pred             cHHHHHHHHHHHHHHHHH-HHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHH
Confidence            999999999999998644 677899999999999999983 33333   567777777775 667788899999999998


Q ss_pred             HHh-ccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--CcchHHHHHHHHHHhccCCCHHHHHHHH
Q 043676          263 DML-VHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA--EFDTKKEAAWAISNATSGGTQEQIKHLV  339 (446)
Q Consensus       263 ~~l-~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~  339 (446)
                      .++ ++..++.+..+++.+++-++...|+.-..+++.|+-...++.++..  ...++++|++.+.|+... +.+++..++
T Consensus       335 ~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r-s~~~~~~~l  413 (461)
T KOG4199|consen  335 TLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR-SAENRTILL  413 (461)
T ss_pred             HHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-hhhccchHH
Confidence            876 4444889999999999999988899989999999998888888864  457999999999999987 456666655


Q ss_pred             HcCChHHHHhcccCCCHHHHHHHHHHHHHH
Q 043676          340 REGCVKPLCDLLLCSDPEIVTVCLIGLENI  369 (446)
Q Consensus       340 ~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l  369 (446)
                      .. +++.|+..-...++.....+-.+|..+
T Consensus       414 ~~-GiE~Li~~A~~~h~tce~~akaALRDL  442 (461)
T KOG4199|consen  414 AN-GIEKLIRTAKANHETCEAAAKAALRDL  442 (461)
T ss_pred             hc-cHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence            54 689998888888888777766666654

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.73  E-value=9.7e-16  Score=141.80  Aligned_cols=360  Identities=15%  Similarity=0.151  Sum_probs=253.8

Q ss_pred             CCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCC-CcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChh
Q 043676            1 LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRN-PPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSE   79 (446)
Q Consensus         1 ~~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~   79 (446)
                      +|+||.|+.+|.+.+.+++.+|+++|+|+..+... ++...+.+.++++.++++|....+.+++.....+|.|+++ ++.
T Consensus       274 lggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS-~D~  352 (717)
T KOG1048|consen  274 LGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSS-NDA  352 (717)
T ss_pred             hccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccc-hhH
Confidence            58999999999999999999999999999887522 3566788889999999999973337999999999999998 555


Q ss_pred             hHHHHHhcCChHHHHHhhCC----------C----CHHHHHHHHHHHHHhhCCChHHHHHHHHc-CChHHHHHHhc----
Q 043676           80 NTNVVIDHGAVPIFVKLLSS----------P----SDDVREQAVWALGNVAGDSPRCRDLVLSQ-GALIPLLAELN----  140 (446)
Q Consensus        80 ~~~~~~~~~~i~~L~~~L~~----------~----~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~l~~~l~----  140 (446)
                      .+..++.. .+..|..-+-.          +    ..++..++..+|.|++....+.|+.+.+. |.|..|+..+.    
T Consensus       353 lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~  431 (717)
T KOG1048|consen  353 LKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQ  431 (717)
T ss_pred             HHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHH
Confidence            66555543 46666654322          1    25678899999999998777777777664 56888887773    


Q ss_pred             -cccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHh---hcCCCHhHHHHHHHHHHHhccC--------------
Q 043676          141 -EHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQL---VHSNDEDVLTYACWSLSYLADG--------------  202 (446)
Q Consensus       141 -~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~l---l~~~~~~v~~~~~~~l~~l~~~--------------  202 (446)
                       ...+....+++...+.|++-.-...   ......+.+...   .....+.   ....|++.-...              
T Consensus       432 ~~~~d~K~VENcvCilRNLSYrl~~E---vp~~~~~~~~~~~~~~~~~~~~---~~~gcf~~k~~k~~~~~~~~~~pe~~  505 (717)
T KOG1048|consen  432 KSDLDSKSVENCVCILRNLSYRLEAE---VPPKYRQVLANIARLPGVGPPA---ESVGCFGFKKRKSDDNCDDLPIPERA  505 (717)
T ss_pred             hccccchhHHHHHHHHhhcCchhhhh---cCHhhhhHhhcccccccCCCcc---cccccccchhhhchhcccccCCcccc
Confidence             2346677899999999997653211   111111111100   0000100   222222222211              


Q ss_pred             -CcHHHHHHHHhCcHHHHHHhcCC-CCccchhHHHHHHHHhhcCCchh----hHHH-HhcCChHHHHHHhccCchHHHHH
Q 043676          203 -TNDKIQAVIEAGVCPRLVELLGH-PSPSVLTPALRTVGNIVTGDDFQ----TQCI-INHGAVPYLLDMLVHNHEEIIKK  275 (446)
Q Consensus       203 -~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~----~~~~-~~~~~~~~l~~~l~~~~~~~v~~  275 (446)
                       .+.-...+....++..-..++.. .++.+.+.++.+|.|++.+....    +..+ .+..+++.++++++.+ +..+..
T Consensus       506 ~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~  584 (717)
T KOG1048|consen  506 TAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVR  584 (717)
T ss_pred             cCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHH
Confidence             11111123344455554445543 56678899999999999776433    2333 4778999999999999 999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC------CcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHh
Q 043676          276 EISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA------EFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCD  349 (446)
Q Consensus       276 ~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~  349 (446)
                      .++.+|.|++.+ ... +.++..++++.|++.+...      +.++...++.+|.++... +..+.+.+.+.++++.|+.
T Consensus       585 s~a~~LrNls~d-~rn-k~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~-~~~nAkdl~~~~g~~kL~~  661 (717)
T KOG1048|consen  585 SAAGALRNLSRD-IRN-KELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRK-NVLNAKDLLEIKGIPKLRL  661 (717)
T ss_pred             HHHHHHhhhccC-chh-hhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHH-hHHHHHHHHhccChHHHHH
Confidence            999999999764 333 4455578999999999764      257888999999999865 6788899999999999999


Q ss_pred             cccCC-CHHHHHHHHHHHHHHHHh
Q 043676          350 LLLCS-DPEIVTVCLIGLENILKV  372 (446)
Q Consensus       350 ll~~~-~~~~~~~~~~~l~~l~~~  372 (446)
                      +..+. ++...+.+...|..+=..
T Consensus       662 I~~s~~S~k~~kaAs~vL~~lW~y  685 (717)
T KOG1048|consen  662 ISKSQHSPKEFKAASSVLDVLWQY  685 (717)
T ss_pred             HhcccCCHHHHHHHHHHHHHHHHH
Confidence            98764 557777777777775443

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.73  E-value=3.3e-16  Score=151.71  Aligned_cols=325  Identities=17%  Similarity=0.167  Sum_probs=248.8

Q ss_pred             CChHHHHHhhcCC---CHHHHHHHHHHHHHHhcCCCCCc--HHHHHhcCCHHHHH-------HhhcCC------CChHHH
Q 043676            2 GSFPALVAGVWSD---DNSLQLEATTLSRKLLSFDRNPP--IEKVIQSGVVPRFV-------EFLMRE------DYPQLQ   63 (446)
Q Consensus         2 ~~i~~l~~~l~s~---~~~~~~~a~~~l~~l~~~~~~~~--~~~~~~~~~~~~L~-------~ll~~~------~~~~~~   63 (446)
                      |-+|.|+++|...   +.+.+..|-.+|.++......+.  ++++--.-++..+.       .+++..      ...+-+
T Consensus       235 gCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~  314 (2195)
T KOG2122|consen  235 GCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQ  314 (2195)
T ss_pred             cchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchh
Confidence            6789999999853   56888889999999887642222  22221111222111       122221      112233


Q ss_pred             H-HHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCC------------CCHHHHHHHHHHHHHhhCCChHHHHH-HHHc
Q 043676           64 Y-EAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSS------------PSDDVREQAVWALGNVAGDSPRCRDL-VLSQ  129 (446)
Q Consensus        64 ~-~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~------------~~~~v~~~a~~~l~~l~~~~~~~~~~-~~~~  129 (446)
                      . .|+.+|.+++. ++++|..+.+.|++.++-.++.-            ....+|.++..+|.||..+...++.. +...
T Consensus       315 lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~r  393 (2195)
T KOG2122|consen  315 LCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQR  393 (2195)
T ss_pred             hHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhh
Confidence            4 67778888888 89999999999999999987752            23578999999999999777655544 4466


Q ss_pred             CChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh--hhhhhHHHHHHh-hcCCCHhHHHHHHHHHHHhccCCcHH
Q 043676          130 GALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFD--QVRPALPALAQL-VHSNDEDVLTYACWSLSYLADGTNDK  206 (446)
Q Consensus       130 ~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~~~~l~~l-l~~~~~~v~~~~~~~l~~l~~~~~~~  206 (446)
                      |++..++..| .+...++....+.+|.||+...+.....  ...|-+..|+.+ ++...+.....++.+||||+.+..++
T Consensus       394 gfMeavVAQL-~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteN  472 (2195)
T KOG2122|consen  394 GFMEAVVAQL-ISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTEN  472 (2195)
T ss_pred             hHHHHHHHHH-hcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccccc
Confidence            8899999999 5566688888999999999886333322  234555555554 45567788999999999999887777


Q ss_pred             HHHHHHh-CcHHHHHHhcCCC----CccchhHHHHHHHHhh---cCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHH
Q 043676          207 IQAVIEA-GVCPRLVELLGHP----SPSVLTPALRTVGNIV---TGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEIS  278 (446)
Q Consensus       207 ~~~~~~~-~~~~~l~~ll~~~----~~~~~~~a~~~l~~l~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~  278 (446)
                      ...+... |.+..|+..|...    .-.+.+.+-++|.|.+   ..++.+++.+.+.+.+..|++.|++. ...+..++|
T Consensus       473 KA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTiVSNaC  551 (2195)
T KOG2122|consen  473 KAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLTIVSNAC  551 (2195)
T ss_pred             chhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceEEeecch
Confidence            7666654 8999999999875    3357778888888875   44677888888999999999999998 888999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccC
Q 043676          279 WIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSG  329 (446)
Q Consensus       279 ~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  329 (446)
                      .+|+||...+++..+.+++.|.++.|.+++.+++..+.+-++.+|.|+...
T Consensus       552 GTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~  602 (2195)
T KOG2122|consen  552 GTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF  602 (2195)
T ss_pred             hhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999764

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=4e-14  Score=136.01  Aligned_cols=387  Identities=15%  Similarity=0.171  Sum_probs=265.3

Q ss_pred             HHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHH
Q 043676            6 ALVAGVWSD-DNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVV   84 (446)
Q Consensus         6 ~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~   84 (446)
                      .++..+.++ .+.+|..-+..++.+++..-.+   ..  .++++.|.+..++++ +..|+.|+.+|..+...-...-...
T Consensus        83 ~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e---~W--Pell~~L~q~~~S~~-~~~rE~al~il~s~~~~~~~~~~~~  156 (1075)
T KOG2171|consen   83 SLLEIIQSETEPSVRHKLADVIAEIARNDLPE---KW--PELLQFLFQSTKSPN-PSLRESALLILSSLPETFGNTLQPH  156 (1075)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHhcccc---ch--HHHHHHHHHHhcCCC-cchhHHHHHHHHhhhhhhccccchh
Confidence            455655554 4788888899999888875222   11  257888889999999 8999999999999987222211111


Q ss_pred             HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh---HHHHHHHHcCChHHHHHHhc---cccchhHHHHHHHHHHHh
Q 043676           85 IDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP---RCRDLVLSQGALIPLLAELN---EHAKLSMLRNATRTLSNF  158 (446)
Q Consensus        85 ~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~---~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l  158 (446)
                      + ..+.+.+.+.+.+++..+|..++++++.++...+   ..++.+..  .+|.++..+.   ...+......++.+|..+
T Consensus       157 ~-~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~--llP~~l~vl~~~i~~~d~~~a~~~l~~l~El  233 (1075)
T KOG2171|consen  157 L-DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRD--LLPSLLNVLQEVIQDGDDDAAKSALEALIEL  233 (1075)
T ss_pred             H-HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHH--HhHHHHHHhHhhhhccchHHHHHHHHHHHHH
Confidence            1 1245667777778776699999999999885442   22233222  4666666653   344666678888888888


Q ss_pred             hcCCCCCChhhhhhhHHHHHHhhcCC--CHhHHHHHHHHHHHhccCCcHHHHHH--HHh---------------------
Q 043676          159 CRGKPEPPFDQVRPALPALAQLVHSN--DEDVLTYACWSLSYLADGTNDKIQAV--IEA---------------------  213 (446)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~v~~~~~~~l~~l~~~~~~~~~~~--~~~---------------------  213 (446)
                      +...+..-......++.....+..+.  ++.+|..++.+|..++...+...+..  +..                     
T Consensus       234 ~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~  313 (1075)
T KOG2171|consen  234 LESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSN  313 (1075)
T ss_pred             HhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcc
Confidence            88765544444556666666666654  57888888888877765533222110  000                     


Q ss_pred             ----------------------------------CcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChH
Q 043676          214 ----------------------------------GVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVP  259 (446)
Q Consensus       214 ----------------------------------~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~  259 (446)
                                                        -+++.+-.++.+.++.-|..++.+|+.++.++.+.....+. .+++
T Consensus       314 ~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~  392 (1075)
T KOG2171|consen  314 EDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILP  392 (1075)
T ss_pred             ccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHH
Confidence                                              13344455566677788999999999999998877665443 5788


Q ss_pred             HHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-CcchHHHHHHHHHHhccCCCHHHHHHH
Q 043676          260 YLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA-EFDTKKEAAWAISNATSGGTQEQIKHL  338 (446)
Q Consensus       260 ~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l  338 (446)
                      .++..|+++ ++.||..|+.+++.++..-...++......+.+.|+..+.+. ++.++..|+.++.|++..+.++.....
T Consensus       393 ~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pY  471 (1075)
T KOG2171|consen  393 IVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPY  471 (1075)
T ss_pred             HHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            888999999 999999999999999875444455555557888899888875 779999999999999988777666553


Q ss_pred             HHcCChH-HHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCC-HHHHHH
Q 043676          339 VREGCVK-PLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDN-NEIHEK  416 (446)
Q Consensus       339 ~~~~~i~-~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~-~~v~~~  416 (446)
                      .. +++. .+..++.++.+.+++.+..+|.......+..         ..+|...+     ++.|...+...+ ++.+..
T Consensus       472 Ld-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~---------F~pY~d~~-----Mp~L~~~L~n~~~~d~r~L  536 (1075)
T KOG2171|consen  472 LD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEK---------FIPYFDRL-----MPLLKNFLQNADDKDLREL  536 (1075)
T ss_pred             HH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh---------hHhHHHHH-----HHHHHHHHhCCCchhhHHH
Confidence            33 3455 4445567788999999999999988776654         23344444     455655544433 444443


Q ss_pred             HH
Q 043676          417 SV  418 (446)
Q Consensus       417 a~  418 (446)
                      ..
T Consensus       537 rg  538 (1075)
T KOG2171|consen  537 RG  538 (1075)
T ss_pred             Hh
Confidence            33

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=6.4e-14  Score=134.66  Aligned_cols=362  Identities=18%  Similarity=0.181  Sum_probs=250.7

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCC---hh
Q 043676            3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGT---SE   79 (446)
Q Consensus         3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~---~~   79 (446)
                      .++.|.+..+|+++..|..|+..|..+...-++.....+.  .+.+.+.+.+.+++. .+|..|+++++.++...   +.
T Consensus       119 ll~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~--~l~~lf~q~~~d~s~-~vr~~a~rA~~a~~~~~~~~~~  195 (1075)
T KOG2171|consen  119 LLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLD--DLLRLFSQTMTDPSS-PVRVAAVRALGAFAEYLENNKS  195 (1075)
T ss_pred             HHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHH--HHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHhccchH
Confidence            4677888889999999999999999876643222221111  356677777888884 59999999999988633   33


Q ss_pred             hHHHHHhcCChHHHHH----hhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhc-cccchhHHHHHHHH
Q 043676           80 NTNVVIDHGAVPIFVK----LLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELN-EHAKLSMLRNATRT  154 (446)
Q Consensus        80 ~~~~~~~~~~i~~L~~----~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~a~~~  154 (446)
                      .+..+.  ..+|.++.    .+..++.+....++.+|..++...|.+-...+. .++...+.... ++-++.+|..|+.+
T Consensus       196 ~~~~~~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~  272 (1075)
T KOG2171|consen  196 EVDKFR--DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEF  272 (1075)
T ss_pred             HHHHHH--HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHH
Confidence            333333  23454444    444567777788888888888666543222211 02222222221 22245566666665


Q ss_pred             HHHhhcCCCC----------------------------------------------------------CChhhhhhhHHH
Q 043676          155 LSNFCRGKPE----------------------------------------------------------PPFDQVRPALPA  176 (446)
Q Consensus       155 L~~l~~~~~~----------------------------------------------------------~~~~~~~~~~~~  176 (446)
                      +..+++..|.                                                          ........+++.
T Consensus       273 ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~  352 (1075)
T KOG2171|consen  273 LVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEA  352 (1075)
T ss_pred             HHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHH
Confidence            5555443100                                                          001122344556


Q ss_pred             HHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcC
Q 043676          177 LAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHG  256 (446)
Q Consensus       177 l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~  256 (446)
                      +-.++++.++.-|..++.+|+.++.+..+.....+. .+++.++..+.++++.||..|+.+++.++..-....+......
T Consensus       353 l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~  431 (1075)
T KOG2171|consen  353 LEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHER  431 (1075)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHh
Confidence            667788999999999999999999998877665444 7888899999999999999999999999988777777777788


Q ss_pred             ChHHHHHHhccCchHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCChH-HHHHHHhcCCcchHHHHHHHHHHhccCCCHHH
Q 043676          257 AVPYLLDMLVHNHEEIIKKEISWIISNITAGN-REQIQAVIDAGLIR-PIVNLLQNAEFDTKKEAAWAISNATSGGTQEQ  334 (446)
Q Consensus       257 ~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~-~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~  334 (446)
                      +++.++..+.+..+++++..|+.++-|+.... ...+....+ +++. .+..+++++.+.+++.++.+|+.++.......
T Consensus       432 l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F  510 (1075)
T KOG2171|consen  432 LPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKF  510 (1075)
T ss_pred             ccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhh
Confidence            88999999998878899999999999998743 333343333 5666 45556667789999999999999998766666


Q ss_pred             HHHHHHcCChHHHHhcccCCC----HHHHHHHHHHHHHHHHhhh
Q 043676          335 IKHLVREGCVKPLCDLLLCSD----PEIVTVCLIGLENILKVGE  374 (446)
Q Consensus       335 ~~~l~~~~~i~~L~~ll~~~~----~~~~~~~~~~l~~l~~~~~  374 (446)
                      .+++-.  .+|.|..++...+    ..++-++.+++.-+-..-.
T Consensus       511 ~pY~d~--~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVG  552 (1075)
T KOG2171|consen  511 IPYFDR--LMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVG  552 (1075)
T ss_pred             HhHHHH--HHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhh
Confidence            666554  6888888887654    3466666666665544433

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.72  E-value=2.3e-14  Score=129.51  Aligned_cols=405  Identities=14%  Similarity=0.075  Sum_probs=275.4

Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCC-ChHHHHHHHHHHHHHcCCChhhHHHHHh
Q 043676            8 VAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRED-YPQLQYEAAWVLINIASGTSENTNVVID   86 (446)
Q Consensus         8 ~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~   86 (446)
                      +..+-+.+|+....+.....+++.+. +++...+++.|.++.|+.++...+ .++.+...+.++.....+.......+.+
T Consensus        15 l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~   93 (678)
T KOG1293|consen   15 LYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLR   93 (678)
T ss_pred             HHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHH
Confidence            44555778888888888999988775 555557999999999999998755 2567777777888888878888889999


Q ss_pred             cCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChHHH--HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 043676           87 HGAVPIFVKLLSSPS-DDVREQAVWALGNVAGDSPRCR--DLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKP  163 (446)
Q Consensus        87 ~~~i~~L~~~L~~~~-~~v~~~a~~~l~~l~~~~~~~~--~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  163 (446)
                      .+.++.++.+|.+++ ..+++.+++++.++.+.++...  ........+..+..++ ..+.......-+....+++....
T Consensus        94 ~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~~~~  172 (678)
T KOG1293|consen   94 IIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSSTKD  172 (678)
T ss_pred             HhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhccccccch
Confidence            999999999999988 8899999999999996654211  1111222344444444 22334444445555556666555


Q ss_pred             CCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHH---HhccCCcHHHHHH----HHhCcHH--HHHHhcCCCCccchhHH
Q 043676          164 EPPFDQVRPALPALAQLVHSNDEDVLTYACWSLS---YLADGTNDKIQAV----IEAGVCP--RLVELLGHPSPSVLTPA  234 (446)
Q Consensus       164 ~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~---~l~~~~~~~~~~~----~~~~~~~--~l~~ll~~~~~~~~~~a  234 (446)
                      +.......++.+.+.-++...+...|..++.++.   ++..+++.....+    ...|+.+  .+..++++++...+..+
T Consensus       173 hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~s  252 (678)
T KOG1293|consen  173 HQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRS  252 (678)
T ss_pred             hhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHH
Confidence            5555566788888888888778999999999999   7777766544433    3335555  45666777777777777


Q ss_pred             HHHHHHhhcCCch---------------------------------------------------hhHHHHhcCChHHHHH
Q 043676          235 LRTVGNIVTGDDF---------------------------------------------------QTQCIINHGAVPYLLD  263 (446)
Q Consensus       235 ~~~l~~l~~~~~~---------------------------------------------------~~~~~~~~~~~~~l~~  263 (446)
                      +.++.++...+..                                                   ......+....+...+
T Consensus       253 l~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~e  332 (678)
T KOG1293|consen  253 LECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTE  332 (678)
T ss_pred             HHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHH
Confidence            7777666543300                                                   0000000011111111


Q ss_pred             Hh----------------------------------------------------ccCchHHHHHHHHHHHHHHhcCCHHH
Q 043676          264 ML----------------------------------------------------VHNHEEIIKKEISWIISNITAGNREQ  291 (446)
Q Consensus       264 ~l----------------------------------------------------~~~~~~~v~~~a~~~l~~l~~~~~~~  291 (446)
                      ++                                                    ... +..++..|+-++-+++..-...
T Consensus       333 llf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~k-d~~~~aaa~l~~~s~srsV~aL  411 (678)
T KOG1293|consen  333 LLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIK-DHDFVAAALLCLKSFSRSVSAL  411 (678)
T ss_pred             HHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccc-cHHHHHHHHHHHHHHHHHHHHH
Confidence            11                                                    111 2333444444444443321111


Q ss_pred             HHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHH
Q 043676          292 IQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILK  371 (446)
Q Consensus       292 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~  371 (446)
                      ...+-...+..+|++++..++..++..++.+|+|+...-+ .....++..|+++.+.+++.+.++.++..++|+|.+++-
T Consensus       412 ~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f  490 (678)
T KOG1293|consen  412 RTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMF  490 (678)
T ss_pred             HcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            1113345688999999999999999999999999987633 456677899999999999999999999999999999876


Q ss_pred             hhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 043676          372 VGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGR  428 (446)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~  428 (446)
                      .+....            ...+..-=+...|..+.++++..|++.+-.+++++..+.
T Consensus       491 ~~de~~------------k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~  535 (678)
T KOG1293|consen  491 NCDEEE------------KFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS  535 (678)
T ss_pred             cchHHH------------HHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence            655543            222222223455788899999999999999999998763

>PRK09687 putative lyase; Provisional

Probab=99.71  E-value=4.2e-15  Score=127.79  Aligned_cols=254  Identities=15%  Similarity=0.125  Sum_probs=198.7

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676            3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN   82 (446)
Q Consensus         3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~   82 (446)
                      .++.|...|.++|..++..+++.|..+-.            ..+++.+..++++++ +.+|..|+++|+.+.... ..  
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~-~~--   87 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAK-RC--   87 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCc-cc--
Confidence            35678899999999999999999986432            145788888899998 899999999999997522 11  


Q ss_pred             HHHhcCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676           83 VVIDHGAVPIFVKL-LSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG  161 (446)
Q Consensus        83 ~~~~~~~i~~L~~~-L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  161 (446)
                         ....++.|..+ ++++++.||..++.+|++++.......     ...+..+...+ .+.+..++..++++|..+.. 
T Consensus        88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~-----~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~-  157 (280)
T PRK09687         88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYS-----PKIVEQSQITA-FDKSTNVRFAVAFALSVIND-  157 (280)
T ss_pred             ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccc-----hHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC-
Confidence               11346777776 678999999999999999974332110     11234455556 66789999999999976532 


Q ss_pred             CCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHh
Q 043676          162 KPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI  241 (446)
Q Consensus       162 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l  241 (446)
                               ...++.|+.++.++++.++..++.+|+.+....+         ..++.|+..+.+.++.+|..|++.|+.+
T Consensus       158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~  219 (280)
T PRK09687        158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR  219 (280)
T ss_pred             ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence                     3578999999999999999999999999843333         4457789999999999999999999885


Q ss_pred             hcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCCcchHHHHH
Q 043676          242 VTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQ-NAEFDTKKEAA  320 (446)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~  320 (446)
                      -.  +         ..++.|+..+.++ +  ++..++.+|+++  +++.         .+|.|..+++ +.|..++..|.
T Consensus       220 ~~--~---------~av~~Li~~L~~~-~--~~~~a~~ALg~i--g~~~---------a~p~L~~l~~~~~d~~v~~~a~  274 (280)
T PRK09687        220 KD--K---------RVLSVLIKELKKG-T--VGDLIIEAAGEL--GDKT---------LLPVLDTLLYKFDDNEIITKAI  274 (280)
T ss_pred             CC--h---------hHHHHHHHHHcCC-c--hHHHHHHHHHhc--CCHh---------HHHHHHHHHhhCCChhHHHHHH
Confidence            43  1         3689999999887 4  678899999998  3342         7889999997 77999999999


Q ss_pred             HHHHH
Q 043676          321 WAISN  325 (446)
Q Consensus       321 ~aL~~  325 (446)
                      +++..
T Consensus       275 ~a~~~  279 (280)
T PRK09687        275 DKLKR  279 (280)
T ss_pred             HHHhc
Confidence            98864

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.67  E-value=6.9e-14  Score=140.73  Aligned_cols=275  Identities=19%  Similarity=0.190  Sum_probs=218.8

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676            3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN   82 (446)
Q Consensus         3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~   82 (446)
                      .++.|++.|.++++.+|..|+..|..+..            .+.++.|...|.+++ +.+|..|+..|..+....+    
T Consensus       622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~~----  684 (897)
T PRK13800        622 SVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVLP----  684 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhccC----
Confidence            46789999999999999999999987532            246899999999888 8999999999988854111    


Q ss_pred             HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 043676           83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK  162 (446)
Q Consensus        83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  162 (446)
                            ..+.+...|.++++.+|..++..|..+....            ...++..+ .++++.++..++.+|..+-.  
T Consensus       685 ------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L-~D~d~~VR~~Av~aL~~~~~--  743 (897)
T PRK13800        685 ------PAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAAL-GDPDHRVRIEAVRALVSVDD--  743 (897)
T ss_pred             ------chHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHh-cCCCHHHHHHHHHHHhcccC--
Confidence                  2357788889999999999999998875322            23456677 78899999999999997621  


Q ss_pred             CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhh
Q 043676          163 PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIV  242 (446)
Q Consensus       163 ~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~  242 (446)
                                 .+.+..++.++++.+|..++.+|+.+.....         ..++.|..+++++++.+|..|+..|+.+.
T Consensus       744 -----------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g  803 (897)
T PRK13800        744 -----------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAELG  803 (897)
T ss_pred             -----------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence                       2446778999999999999999998865432         23677889999999999999999999885


Q ss_pred             cCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHH
Q 043676          243 TGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWA  322 (446)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a  322 (446)
                      ...          ...+.+...+.++ ++.||..|+++|+.+..  +         ..++.|+.+++++++.||..|+.+
T Consensus       804 ~~~----------~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~--~---------~a~~~L~~~L~D~~~~VR~~A~~a  861 (897)
T PRK13800        804 CPP----------DDVAAATAALRAS-AWQVRQGAARALAGAAA--D---------VAVPALVEALTDPHLDVRKAAVLA  861 (897)
T ss_pred             Ccc----------hhHHHHHHHhcCC-ChHHHHHHHHHHHhccc--c---------chHHHHHHHhcCCCHHHHHHHHHH
Confidence            421          1235688889888 89999999999998732  2         356889999999999999999999


Q ss_pred             HHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHH
Q 043676          323 ISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLEN  368 (446)
Q Consensus       323 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~  368 (446)
                      |..+.  .++..         .+.|...+++.+++|+..+..+|..
T Consensus       862 L~~~~--~~~~a---------~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        862 LTRWP--GDPAA---------RDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             HhccC--CCHHH---------HHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            99972  23332         5567788899999999999988853

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.64  E-value=5.1e-14  Score=127.29  Aligned_cols=371  Identities=14%  Similarity=0.100  Sum_probs=246.2

Q ss_pred             CCChHHHHHhhcCCC--HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCCh
Q 043676            1 LGSFPALVAGVWSDD--NSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTS   78 (446)
Q Consensus         1 ~~~i~~l~~~l~s~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~   78 (446)
                      +|++|.+...++.++  +..+...+..+...++++ ......+.+.+.++.|++++.+++...++...++++.++.+.++
T Consensus        50 ~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~e-qd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~  128 (678)
T KOG1293|consen   50 LGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGE-QDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSK  128 (678)
T ss_pred             hcchHHHHhhccccCCchhhhhhHHHHHHhHHhhc-cchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhccc
Confidence            478899999988766  455555666666666665 66788899999999999999988856899999999999998443


Q ss_pred             hhHHHH--HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHH
Q 043676           79 ENTNVV--IDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLS  156 (446)
Q Consensus        79 ~~~~~~--~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~  156 (446)
                      ..-...  ....++..+..++..+.......-+....+++ ..+..+......|+.+.+.-++ ...+...+..++.+++
T Consensus       129 ~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s-~~~~hq~Il~Na~i~ekI~~l~-~~~s~~~RlaaL~~~s  206 (678)
T KOG1293|consen  129 YQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLS-STKDHQLILCNAGILEKINILL-MYLSSKLRLAALLCLS  206 (678)
T ss_pred             ccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccc-ccchhhheeccccchhhHHHHH-HhhhHHHHHHHHHHhh
Confidence            322222  22344455554554244444444455555555 3345566666777766665555 5567788889998888


Q ss_pred             ---HhhcCCCCCChhhh-----hhhHH--HHHHhhcCCCHhHHHHHHHHHHHhccCCcH------------H--------
Q 043676          157 ---NFCRGKPEPPFDQV-----RPALP--ALAQLVHSNDEDVLTYACWSLSYLADGTND------------K--------  206 (446)
Q Consensus       157 ---~l~~~~~~~~~~~~-----~~~~~--~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~------------~--------  206 (446)
                         ++..+.+...+...     .++.+  .+..++++.+..-+..++.++..+...+.+            .        
T Consensus       207 r~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~  286 (678)
T KOG1293|consen  207 RGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQY  286 (678)
T ss_pred             ccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHH
Confidence               66666544333222     33333  344555565555555566665555433200            0        


Q ss_pred             -------------------------------HHHHHHhCcHHHHHHhcC-------------------------------
Q 043676          207 -------------------------------IQAVIEAGVCPRLVELLG-------------------------------  224 (446)
Q Consensus       207 -------------------------------~~~~~~~~~~~~l~~ll~-------------------------------  224 (446)
                                                     .....+....+.+.+++.                               
T Consensus       287 ~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~  366 (678)
T KOG1293|consen  287 NCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLE  366 (678)
T ss_pred             hhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcc
Confidence                                           000001111111111111                               


Q ss_pred             ---------------------CCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHH
Q 043676          225 ---------------------HPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISN  283 (446)
Q Consensus       225 ---------------------~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~  283 (446)
                                           ..+...+.+|+.++.+++..-...+..+-...+.+++++++.++ +..++..+.++++|
T Consensus       367 i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-~~~i~~~~lgai~N  445 (678)
T KOG1293|consen  367 ISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-EIMIMGITLGAICN  445 (678)
T ss_pred             hhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-chhHHHHHHHHHHH
Confidence                                 01223455555566555543333333333557889999999888 99999999999999


Q ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHH
Q 043676          284 ITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCL  363 (446)
Q Consensus       284 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~  363 (446)
                      +...-...+..++..|++..+..++.+.++.++..+.|+|.++.-.++......+...-.-..+..+.+++++.|++.|+
T Consensus       446 lVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~f  525 (678)
T KOG1293|consen  446 LVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCF  525 (678)
T ss_pred             HHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHH
Confidence            99865666788999999999999999999999999999999999887666655555554566677788999999999999


Q ss_pred             HHHHHHHHhhhh
Q 043676          364 IGLENILKVGEA  375 (446)
Q Consensus       364 ~~l~~l~~~~~~  375 (446)
                      ..+.|+.....+
T Consensus       526 qllRNl~c~~~~  537 (678)
T KOG1293|consen  526 QLLRNLTCNSRK  537 (678)
T ss_pred             HHHHHhhcCcHH
Confidence            999999876443

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.64  E-value=1.1e-13  Score=116.27  Aligned_cols=240  Identities=19%  Similarity=0.194  Sum_probs=185.5

Q ss_pred             hhhhhHHHHHHhhcC-CCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCch
Q 043676          169 QVRPALPALAQLVHS-NDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDF  247 (446)
Q Consensus       169 ~~~~~~~~l~~ll~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~  247 (446)
                      ...+-++.++.+|+. .|+.+++.++.++++.+..+ .....+.+.|+++.+..++.++++.++..|++++.|++...+.
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en   87 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN   87 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence            345677899999985 58999999999999987654 4566788899999999999999999999999999999875443


Q ss_pred             hhHHHHhcCChHHHHHH-hccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHh
Q 043676          248 QTQCIINHGAVPYLLDM-LVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNA  326 (446)
Q Consensus       248 ~~~~~~~~~~~~~l~~~-l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  326 (446)
                       ... ++. .++.+.+. ..++.+..++..++.+|.|++..+ +. ..++. +.++.++.++..++..+|..++++|.|+
T Consensus        88 -~~~-Ik~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~-~~~l~-~~i~~ll~LL~~G~~~~k~~vLk~L~nL  161 (254)
T PF04826_consen   88 -QEQ-IKM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DY-HHMLA-NYIPDLLSLLSSGSEKTKVQVLKVLVNL  161 (254)
T ss_pred             -HHH-HHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-ch-hhhHH-hhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence             332 333 45555554 344447789999999999997543 22 23332 4799999999999999999999999999


Q ss_pred             ccCCCHHHHHHHHHcCChHHHHhcccCC-CHHHHHHHHHHHHHHHHhhhhhhcccC-CCCccchHHHHHHHhC-hHHHHH
Q 043676          327 TSGGTQEQIKHLVREGCVKPLCDLLLCS-DPEIVTVCLIGLENILKVGEAERNMGT-TIGDVNQYAQFVEEAG-GLEKIE  403 (446)
Q Consensus       327 ~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~l~~~~-~~~~l~  403 (446)
                      +.  ++...+.++..+++..++.+++.. +.++...++..+.++-..-.+...... .-....+....|.+.+ .-+++.
T Consensus       162 S~--np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~  239 (254)
T PF04826_consen  162 SE--NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQ  239 (254)
T ss_pred             cc--CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHH
Confidence            98  688899999999999999999875 678888899999998655444422211 1123344557777777 556689


Q ss_pred             HhhcCCCHHHHHHH
Q 043676          404 NLQSHDNNEIHEKS  417 (446)
Q Consensus       404 ~l~~~~~~~v~~~a  417 (446)
                      .+..|++++|+.++
T Consensus       240 ~l~~h~d~ev~~~v  253 (254)
T PF04826_consen  240 ALANHPDPEVKEQV  253 (254)
T ss_pred             HHHcCCCHHHhhhc
Confidence            99999999998764

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.64  E-value=4.9e-14  Score=118.28  Aligned_cols=196  Identities=20%  Similarity=0.241  Sum_probs=163.0

Q ss_pred             HhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChH
Q 043676           42 IQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPR  121 (446)
Q Consensus        42 ~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~  121 (446)
                      ++.+-++.|+.+|+...+|.+++.+..++++.+. .+..+..+.+.|+++.+..++.++++.+++.|++++.|++...+ 
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e-   86 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE-   86 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh-
Confidence            5556789999999976559999999999999987 88999999999999999999999999999999999999996554 


Q ss_pred             HHHHHHHcCChHHHHHHhccc-cchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhc
Q 043676          122 CRDLVLSQGALIPLLAELNEH-AKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLA  200 (446)
Q Consensus       122 ~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~  200 (446)
                      .+..+..  .++.++...... .+..++..++.+|.+|+........  ..+.+|.++.++.+++..++..++++|.+++
T Consensus        87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~--l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS  162 (254)
T PF04826_consen   87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHM--LANYIPDLLSLLSSGSEKTKVQVLKVLVNLS  162 (254)
T ss_pred             hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhh--HHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence            4444432  466666655333 4788999999999999877543333  3568999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHhCcHHHHHHhcCCC-CccchhHHHHHHHHhhcC
Q 043676          201 DGTNDKIQAVIEAGVCPRLVELLGHP-SPSVLTPALRTVGNIVTG  244 (446)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~~~~~a~~~l~~l~~~  244 (446)
                      .++. ..+.++..+++..++.++... +.++...++..+.|+..+
T Consensus       163 ~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  163 ENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             cCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            9855 556688889999999999885 667788999999999654

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.62  E-value=3.7e-13  Score=135.49  Aligned_cols=277  Identities=14%  Similarity=0.171  Sum_probs=218.7

Q ss_pred             cCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHH
Q 043676           44 SGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCR  123 (446)
Q Consensus        44 ~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~  123 (446)
                      ...++.|+..|.+++ +.+|..|+..|+.+..           .+.++.|...|+++++.+|..|+.+|..+....+   
T Consensus       620 ~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~---  684 (897)
T PRK13800        620 APSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP---  684 (897)
T ss_pred             chhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC---
Confidence            346789999999999 9999999999998864           2468899999999999999999999988853222   


Q ss_pred             HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCC
Q 043676          124 DLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGT  203 (446)
Q Consensus       124 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~  203 (446)
                             ..+.+...| ++.++.++..++.+|..+....           ...+...+.++++.+|..++.+|+.+-.  
T Consensus       685 -------~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~--  743 (897)
T PRK13800        685 -------PAPALRDHL-GSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD--  743 (897)
T ss_pred             -------chHHHHHHh-cCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC--
Confidence                   124666777 6789999999999998874321           2456788999999999999999987521  


Q ss_pred             cHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHH
Q 043676          204 NDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISN  283 (446)
Q Consensus       204 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~  283 (446)
                                  .+.|..++.++++.+|..++.+|+.+.....         ..++.|..+++++ ++.+|..|+.+|++
T Consensus       744 ------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~-d~~VR~aA~~aLg~  801 (897)
T PRK13800        744 ------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDP-DPLVRAAALAALAE  801 (897)
T ss_pred             ------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCC-CHHHHHHHHHHHHh
Confidence                        2346678999999999999999998865322         1367788999998 89999999999998


Q ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHH
Q 043676          284 ITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCL  363 (446)
Q Consensus       284 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~  363 (446)
                      +..  +.        ...+.+...+.+.++.||..|+.+|..+...            ..++.|..+++++++.|+..+.
T Consensus       802 ~g~--~~--------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~------------~a~~~L~~~L~D~~~~VR~~A~  859 (897)
T PRK13800        802 LGC--PP--------DDVAAATAALRASAWQVRQGAARALAGAAAD------------VAVPALVEALTDPHLDVRKAAV  859 (897)
T ss_pred             cCC--cc--------hhHHHHHHHhcCCChHHHHHHHHHHHhcccc------------chHHHHHHHhcCCCHHHHHHHH
Confidence            843  21        1345688889999999999999999987421            1468899999999999999999


Q ss_pred             HHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHH
Q 043676          364 IGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKT  423 (446)
Q Consensus       364 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~  423 (446)
                      ++|..+ ...+.                      ..+.|...+++++++|+..|.+.|+.
T Consensus       860 ~aL~~~-~~~~~----------------------a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        860 LALTRW-PGDPA----------------------ARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             HHHhcc-CCCHH----------------------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            999885 11111                      14456688899999999999988863

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=4.4e-14  Score=127.53  Aligned_cols=347  Identities=15%  Similarity=0.142  Sum_probs=234.5

Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHh-
Q 043676            8 VAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVID-   86 (446)
Q Consensus         8 ~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-   86 (446)
                      +..+...++.+|-..-..+..+++...-...     ..++|.|.++|.+++ ....+-|..+|.+++.++.+.-+.-.. 
T Consensus        96 l~~lgd~~~lIr~tvGivITTI~s~~~~~~w-----pelLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~  169 (885)
T KOG2023|consen   96 LHGLGDASPLIRATVGIVITTIASTGGLQHW-----PELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLT  169 (885)
T ss_pred             HhhccCchHHHHhhhhheeeeeecccccccc-----hhHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhccc
Confidence            3344444454444444444444443211111     357999999999999 789999999999999866544332111 


Q ss_pred             ---cCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHc-CChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 043676           87 ---HGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQ-GALIPLLAELNEHAKLSMLRNATRTLSNFCRGK  162 (446)
Q Consensus        87 ---~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  162 (446)
                         .-.++.++++.+++++.+|..|+.++..+.-..+..  ..... ..+..+..+- .+.+++++.+.|.++..|..-.
T Consensus       170 rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qa--l~~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Llevr  246 (885)
T KOG2023|consen  170 RPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQA--LYVHIDKFLEILFALA-NDEDPEVRKNVCRALVFLLEVR  246 (885)
T ss_pred             CchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHH--HHHHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhc
Confidence               135788999999999999999999998887544321  11111 1344444444 7889999999999999999988


Q ss_pred             CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHH---hCcHHHHHHhcCCC-------------
Q 043676          163 PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIE---AGVCPRLVELLGHP-------------  226 (446)
Q Consensus       163 ~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~---~~~~~~l~~ll~~~-------------  226 (446)
                      +.+-.....++++.+....++.|+++...|+.....++..+.. . .+..   ..++|.|+.-+...             
T Consensus       247 ~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~-~-~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD  324 (885)
T KOG2023|consen  247 PDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPIC-K-EVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEED  324 (885)
T ss_pred             HHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCc-H-HHHHHHHHHHHHHHHccCccccccHHHhcCcccc
Confidence            8877788899999999999999999999999999999977531 1 1221   15555555543221             


Q ss_pred             -------------------------------------------CccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHH
Q 043676          227 -------------------------------------------SPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLD  263 (446)
Q Consensus       227 -------------------------------------------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~  263 (446)
                                                                 ++.+|+.++.+|..|+..-...   ++. .++|.+-+
T Consensus       325 ~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~e---lL~-~l~PlLk~  400 (885)
T KOG2023|consen  325 ESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDE---LLP-ILLPLLKE  400 (885)
T ss_pred             ccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHH---HHH-HHHHHHHH
Confidence                                                       0345665555555555422221   111 24566666


Q ss_pred             HhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHH-HHHHHcC
Q 043676          264 MLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQI-KHLVREG  342 (446)
Q Consensus       264 ~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~-~~l~~~~  342 (446)
                      .|.++ +..+|+.++.+++.++.+.-...-.-. ..++|.|+.++.++.+-||..++|+|+..+.....+.. +++..  
T Consensus       401 ~L~~~-~W~vrEagvLAlGAIAEGcM~g~~p~L-peLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~p--  476 (885)
T KOG2023|consen  401 HLSSE-EWKVREAGVLALGAIAEGCMQGFVPHL-PELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKP--  476 (885)
T ss_pred             HcCcc-hhhhhhhhHHHHHHHHHHHhhhcccch-HHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHH--
Confidence            67777 999999999999999876433221111 13789999999999999999999999988664322222 22222  


Q ss_pred             ChHHHHhcccCCCHHHHHHHHHHHHHHHHhh
Q 043676          343 CVKPLCDLLLCSDPEIVTVCLIGLENILKVG  373 (446)
Q Consensus       343 ~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~  373 (446)
                      ++..|...+-+++..|++.|+.++..+-+..
T Consensus       477 vL~~ll~~llD~NK~VQEAAcsAfAtleE~A  507 (885)
T KOG2023|consen  477 VLEGLLRRLLDSNKKVQEAACSAFATLEEEA  507 (885)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHhc
Confidence            4555666666789999999999988866543

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.60  E-value=1.8e-13  Score=131.89  Aligned_cols=362  Identities=16%  Similarity=0.199  Sum_probs=252.7

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV   83 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   83 (446)
                      +..+.+.|.++|+.++-.|++++.++...       .+.+ .+++.+.+++.+++ +.+|..|+.++.++...+|+... 
T Consensus        81 ~n~l~kdl~~~n~~~~~lAL~~l~~i~~~-------~~~~-~l~~~v~~ll~~~~-~~VRk~A~~~l~~i~~~~p~~~~-  150 (526)
T PF01602_consen   81 INSLQKDLNSPNPYIRGLALRTLSNIRTP-------EMAE-PLIPDVIKLLSDPS-PYVRKKAALALLKIYRKDPDLVE-  150 (526)
T ss_dssp             HHHHHHHHCSSSHHHHHHHHHHHHHH-SH-------HHHH-HHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCHCCHH-
T ss_pred             HHHHHHhhcCCCHHHHHHHHhhhhhhccc-------chhh-HHHHHHHHHhcCCc-hHHHHHHHHHHHHHhccCHHHHH-
Confidence            45677888899999999999999987532       2232 36888889999999 89999999999999875555322 


Q ss_pred             HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 043676           84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKP  163 (446)
Q Consensus        84 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  163 (446)
                        .. .++.+.+++.++++.++..|+.++..+ ..++.....+ -...+..+.+.+ ...++-.+..++.++..++...+
T Consensus       151 --~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~-~~~~~~~L~~~l-~~~~~~~q~~il~~l~~~~~~~~  224 (526)
T PF01602_consen  151 --DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSL-IPKLIRILCQLL-SDPDPWLQIKILRLLRRYAPMEP  224 (526)
T ss_dssp             --GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTH-HHHHHHHHHHHH-TCCSHHHHHHHHHHHTTSTSSSH
T ss_pred             --HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhh-HHHHHHHhhhcc-cccchHHHHHHHHHHHhcccCCh
Confidence              12 478899999999999999999999998 2222210011 111233444444 66788888899988888776542


Q ss_pred             CCChhhh--hhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHh
Q 043676          164 EPPFDQV--RPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI  241 (446)
Q Consensus       164 ~~~~~~~--~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l  241 (446)
                          ...  ..+++.+..++++.++.+...++.++..+....+      .-..+++.+..++.++++.++..++..+..+
T Consensus       225 ----~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l  294 (526)
T PF01602_consen  225 ----EDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSLSQL  294 (526)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHH
T ss_pred             ----hhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHHHHh
Confidence                122  5688889999998899999999999998876533      2226788999999999999999999999999


Q ss_pred             hcCCchhhHHHHhcCChHHHHHHhc-cCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-CCcchHHHH
Q 043676          242 VTGDDFQTQCIINHGAVPYLLDMLV-HNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQN-AEFDTKKEA  319 (446)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a  319 (446)
                      +...+.    .+.  .....+..+. ++ +..+|..++..+..++.  +.+...     +++.|...+.+ .+++++..+
T Consensus       295 ~~~~~~----~v~--~~~~~~~~l~~~~-d~~Ir~~~l~lL~~l~~--~~n~~~-----Il~eL~~~l~~~~d~~~~~~~  360 (526)
T PF01602_consen  295 AQSNPP----AVF--NQSLILFFLLYDD-DPSIRKKALDLLYKLAN--ESNVKE-----ILDELLKYLSELSDPDFRREL  360 (526)
T ss_dssp             CCHCHH----HHG--THHHHHHHHHCSS-SHHHHHHHHHHHHHH----HHHHHH-----HHHHHHHHHHHC--HHHHHHH
T ss_pred             hcccch----hhh--hhhhhhheecCCC-ChhHHHHHHHHHhhccc--ccchhh-----HHHHHHHHHHhccchhhhhhH
Confidence            986622    222  2233344555 56 88999999999999964  444443     57778888844 478899999


Q ss_pred             HHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChH
Q 043676          320 AWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGL  399 (446)
Q Consensus       320 ~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  399 (446)
                      +.+++.++.... .....     +++.+++++...++.+...+...+.+++...++.+            ...      +
T Consensus       361 i~~I~~la~~~~-~~~~~-----~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~------------~~~------l  416 (526)
T PF01602_consen  361 IKAIGDLAEKFP-PDAEW-----YVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELR------------EKI------L  416 (526)
T ss_dssp             HHHHHHHHHHHG-SSHHH-----HHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTH------------HHH------H
T ss_pred             HHHHHHHHhccC-chHHH-----HHHHHHHhhhhccccccchHHHHHHHHhhcChhhh------------HHH------H
Confidence            999999876421 11111     46778888887777777777777877776544432            111      3


Q ss_pred             HHHHHh-hcCCCHHHHHHHHHHHHHhcCCCC
Q 043676          400 EKIENL-QSHDNNEIHEKSVKIFKTYWCGRN  429 (446)
Q Consensus       400 ~~l~~l-~~~~~~~v~~~a~~~l~~~~~~~~  429 (446)
                      +.+.++ ..-.++++...+.|++..|-+..+
T Consensus       417 ~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~  447 (526)
T PF01602_consen  417 KKLIELLEDISSPEALAAAIWILGEYGELIE  447 (526)
T ss_dssp             HHHHHHHTSSSSHHHHHHHHHHHHHHCHHHT
T ss_pred             HHHHHHHHHhhHHHHHHHHHhhhcccCCccc
Confidence            333333 345677888888899888865433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.58  E-value=4.1e-13  Score=129.45  Aligned_cols=330  Identities=19%  Similarity=0.199  Sum_probs=241.9

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676            3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN   82 (446)
Q Consensus         3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~   82 (446)
                      .++.+++.+.+.|...+..+--++..+...+  +..-.+    +++.+.+-+.+++ +.++..|+++++++..  ++...
T Consensus        43 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~--~~~~~l----~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~~  113 (526)
T PF01602_consen   43 LFMEVIKLISSKDLELKRLGYLYLSLYLHED--PELLIL----IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMAE  113 (526)
T ss_dssp             THHHHHCTCSSSSHHHHHHHHHHHHHHTTTS--HHHHHH----HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhhcc--hhHHHH----HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchhh
Confidence            4567788888899998888887777766542  221111    4677777888988 8999999999999984  55554


Q ss_pred             HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 043676           83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK  162 (446)
Q Consensus        83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  162 (446)
                      .+     ++.+.+++.++++.+|..|+.++..+....|..   +... .++.+.+++ .+.++.++..|+.++..+ ...
T Consensus       114 ~l-----~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~~  182 (526)
T PF01602_consen  114 PL-----IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KCN  182 (526)
T ss_dssp             HH-----HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HCT
T ss_pred             HH-----HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-ccC
Confidence            44     688889999999999999999999998666542   2222 467888888 788899999999999999 222


Q ss_pred             CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhh
Q 043676          163 PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIV  242 (446)
Q Consensus       163 ~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~  242 (446)
                      +..........++.+.+++...++..+..+++++..++...+.....   ..+++.+..++.+.++.+...++.++..+.
T Consensus       183 ~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~  259 (526)
T PF01602_consen  183 DDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLS  259 (526)
T ss_dssp             HHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence            11111344566677777778889999999999999998776654421   367788888888888899999999998877


Q ss_pred             cCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCCcchHHHHHH
Q 043676          243 TGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQ-NAEFDTKKEAAW  321 (446)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~  321 (446)
                      ...+      .-..+++.+..++.++ ++.++..++..+..++...+...    .  .....+..+. +.+..+|..++.
T Consensus       260 ~~~~------~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~~v----~--~~~~~~~~l~~~~d~~Ir~~~l~  326 (526)
T PF01602_consen  260 PSPE------LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPPAV----F--NQSLILFFLLYDDDPSIRKKALD  326 (526)
T ss_dssp             SSHH------HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHHHH----G--THHHHHHHHHCSSSHHHHHHHHH
T ss_pred             cchH------HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccchhh----h--hhhhhhheecCCCChhHHHHHHH
Confidence            6433      2234678899999987 89999999999999987653322    2  2222233444 778899999999


Q ss_pred             HHHHhccCCCHHHHHHHHHcCChHHHHhcc-cCCCHHHHHHHHHHHHHHHHhhhhh
Q 043676          322 AISNATSGGTQEQIKHLVREGCVKPLCDLL-LCSDPEIVTVCLIGLENILKVGEAE  376 (446)
Q Consensus       322 aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~~~~~~~~~l~~l~~~~~~~  376 (446)
                      .|..++.   +.+...     +++.|...+ +..+++++..++..+..+....+..
T Consensus       327 lL~~l~~---~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~  374 (526)
T PF01602_consen  327 LLYKLAN---ESNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPD  374 (526)
T ss_dssp             HHHHH-----HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS
T ss_pred             HHhhccc---ccchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCch
Confidence            9999985   455555     467788888 4558889999999998887765543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.58  E-value=9.1e-12  Score=111.50  Aligned_cols=322  Identities=16%  Similarity=0.189  Sum_probs=232.8

Q ss_pred             CChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChHHHHHHHHc-----CChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676           88 GAVPIFVKLLSS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQ-----GALIPLLAELNEHAKLSMLRNATRTLSNFCRG  161 (446)
Q Consensus        88 ~~i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-----~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  161 (446)
                      ..+..++.++.. ..+++.+.++..+.-+....+.....+.+.     ....+++.++ ...+.-+...++..+..+...
T Consensus        53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL-~~~d~~i~~~a~~iLt~l~~~  131 (429)
T cd00256          53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLL-NRQDQFIVHMSFSILAKLACF  131 (429)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHH-cCCchhHHHHHHHHHHHHHhc
Confidence            456777778776 668899999999999998877655555543     4677888888 567888999999999999876


Q ss_pred             CCCCCh-hhhhhhHHHHHHhhcCC-CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC--CccchhHHHHH
Q 043676          162 KPEPPF-DQVRPALPALAQLVHSN-DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHP--SPSVLTPALRT  237 (446)
Q Consensus       162 ~~~~~~-~~~~~~~~~l~~ll~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~~~~~a~~~  237 (446)
                      .+.... ......++.+...+++. +...+..++.++..+....+.+ ..+.+.++++.|+++|+..  +......++.|
T Consensus       132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R-~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~  210 (429)
T cd00256         132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYR-FAFVLADGVPTLVKLLSNATLGFQLQYQSIFC  210 (429)
T ss_pred             CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHH-HHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence            533211 12233445666666654 4777888889999999887755 4577788999999999873  44678889999


Q ss_pred             HHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCC------HHHHHHHHHcCChHHHHHHHhcC
Q 043676          238 VGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGN------REQIQAVIDAGLIRPIVNLLQNA  311 (446)
Q Consensus       238 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~------~~~~~~~~~~~~i~~L~~ll~~~  311 (446)
                      ++-++...+ ........++++.++.+++.....++..-++.++.|+...+      ......+++.|+.+.+-.+...+
T Consensus       211 lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk  289 (429)
T cd00256         211 IWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRK  289 (429)
T ss_pred             HHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCC
Confidence            999987544 55555678999999999988767888888999999998632      22334566667766554444332


Q ss_pred             --CcchHHHHHHHH-------HHhcc------------------CC----CHHHHHHHHHcCC--hHHHHhccc-CCCHH
Q 043676          312 --EFDTKKEAAWAI-------SNATS------------------GG----TQEQIKHLVREGC--VKPLCDLLL-CSDPE  357 (446)
Q Consensus       312 --~~~v~~~a~~aL-------~~l~~------------------~~----~~~~~~~l~~~~~--i~~L~~ll~-~~~~~  357 (446)
                        |+++....-..-       ..++.                  +.    -.++...|.++++  +..|+++|+ +.|+.
T Consensus       290 ~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~  369 (429)
T cd00256         290 YDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPI  369 (429)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcc
Confidence              555432221111       11111                  00    1245566665543  788899984 56788


Q ss_pred             HHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 043676          358 IVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYW  425 (446)
Q Consensus       358 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  425 (446)
                      +...||.=+..+++..+..             +..+.+.|+-+.+.+|++|++++|+..|..+++++.
T Consensus       370 ~laVAc~Dige~vr~~P~g-------------r~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  424 (429)
T cd00256         370 ILAVACHDIGEYVRHYPRG-------------KDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM  424 (429)
T ss_pred             eeehhhhhHHHHHHHCccH-------------HHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            8888999999999988775             578889999999999999999999999999998774

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PTZ00429 beta-adaptin; Provisional

Probab=99.57  E-value=3.7e-11  Score=116.00  Aligned_cols=259  Identities=15%  Similarity=0.112  Sum_probs=175.4

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV   83 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   83 (446)
                      ++.+++.+.+.|..++....-.+.+.+...  +... +   -.++.+.+=+.+++ +.+|..|+++++++..  ++....
T Consensus        70 F~dVvk~~~S~d~elKKLvYLYL~~ya~~~--pela-l---LaINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~e~  140 (746)
T PTZ00429         70 FVDVVKLAPSTDLELKKLVYLYVLSTARLQ--PEKA-L---LAVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVLEY  140 (746)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHcccC--hHHH-H---HHHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHHHH
Confidence            455666777777777777777777665532  2111 1   13666777778888 8999999998888765  333333


Q ss_pred             HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 043676           84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKP  163 (446)
Q Consensus        84 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  163 (446)
                           .+..+.+.+.+.++-||..|+.++.++....++   .+.+.+.++.+..++ .+.++.+..+|+.+|..+....+
T Consensus       141 -----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~~  211 (746)
T PTZ00429        141 -----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYGS  211 (746)
T ss_pred             -----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhCc
Confidence                 356778888889999999999999999866553   344556778888877 78899999999999999987654


Q ss_pred             CCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 043676          164 EPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVT  243 (446)
Q Consensus       164 ~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~  243 (446)
                      . ........+..+...+...++..+..++.++......+....     ..++..+...+++.++.|...|+.++.++..
T Consensus       212 ~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~  285 (746)
T PTZ00429        212 E-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLAS  285 (746)
T ss_pred             h-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence            3 234445666777777777788888888888866433222222     2667788888999999999999999998876


Q ss_pred             CC-chhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCH
Q 043676          244 GD-DFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNR  289 (446)
Q Consensus       244 ~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~  289 (446)
                      .. +....... ..+...++.++ ++ +++++.-++..+.-++...+
T Consensus       286 ~~~~~~~~~~~-~rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P  329 (746)
T PTZ00429        286 RCSQELIERCT-VRVNTALLTLS-RR-DAETQYIVCKNIHALLVIFP  329 (746)
T ss_pred             cCCHHHHHHHH-HHHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCH
Confidence            43 22222211 11224455553 34 56677777766666654433

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=2e-13  Score=123.37  Aligned_cols=312  Identities=18%  Similarity=0.203  Sum_probs=216.9

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHc----CChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 043676           88 GAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQ----GALIPLLAELNEHAKLSMLRNATRTLSNFCRGKP  163 (446)
Q Consensus        88 ~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~----~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  163 (446)
                      .+++.|..+|.+++....+.|..+|..+|++++..-+.-...    -.++.+++.. +++++.+|..|+.++-.+....+
T Consensus       128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~-~h~spkiRs~A~~cvNq~i~~~~  206 (885)
T KOG2023|consen  128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFF-KHPSPKIRSHAVGCVNQFIIIQT  206 (885)
T ss_pred             hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHH-hCCChhHHHHHHhhhhheeecCc
Confidence            357899999999999999999999999998876543321111    2477788888 78899999999999998877765


Q ss_pred             CCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 043676          164 EPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVT  243 (446)
Q Consensus       164 ~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~  243 (446)
                      ..-......++..+..+-.+.+++||..++.++..+....+++...... ++++.+++..++.+..+..+||.....++.
T Consensus       207 qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~-~IveyML~~tqd~dE~VALEACEFwla~ae  285 (885)
T KOG2023|consen  207 QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLD-NIVEYMLQRTQDVDENVALEACEFWLALAE  285 (885)
T ss_pred             HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchH-HHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence            5555666788888888888889999999999999999877765544443 888889999999999999999999998887


Q ss_pred             CCchhhHHHH---hcCChHHHHHHhccCc----------h----------------------------------------
Q 043676          244 GDDFQTQCII---NHGAVPYLLDMLVHNH----------E----------------------------------------  270 (446)
Q Consensus       244 ~~~~~~~~~~---~~~~~~~l~~~l~~~~----------~----------------------------------------  270 (446)
                      .. - .+.++   -..++|.|+.-+..+.          +                                        
T Consensus       286 qp-i-~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDd  363 (885)
T KOG2023|consen  286 QP-I-CKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDD  363 (885)
T ss_pred             Cc-C-cHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccc
Confidence            44 2 22222   1235555554332110          0                                        


Q ss_pred             -----HHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH----HHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHc
Q 043676          271 -----EIIKKEISWIISNITAGNREQIQAVIDAGLIRP----IVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVRE  341 (446)
Q Consensus       271 -----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~----L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~  341 (446)
                           ..+|+.++.+|.-+        ..+....+++.    |-+.|.++++.+|+.+.-|++.++.++..-...++-+ 
T Consensus       364 D~~~dWNLRkCSAAaLDVL--------anvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lpe-  434 (885)
T KOG2023|consen  364 DAFSDWNLRKCSAAALDVL--------ANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPE-  434 (885)
T ss_pred             cccccccHhhccHHHHHHH--------HHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHH-
Confidence                 12333333333222        22222334444    4445556788999999999999998765544444433 


Q ss_pred             CChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHH
Q 043676          342 GCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF  421 (446)
Q Consensus       342 ~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l  421 (446)
                       .++.|+++|+++.+-||...+|.|+++...--...           -.+.|.  ..+..|.+-.-+.|.+|++.|..+.
T Consensus       435 -Lip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~-----------~~~~f~--pvL~~ll~~llD~NK~VQEAAcsAf  500 (885)
T KOG2023|consen  435 -LIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDS-----------RDEYFK--PVLEGLLRRLLDSNKKVQEAACSAF  500 (885)
T ss_pred             -HHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCC-----------hHhhhH--HHHHHHHHHHhcccHHHHHHHHHHH
Confidence             68999999999999999999999999765432221           011221  0122333334577899999998887


Q ss_pred             HHhcC
Q 043676          422 KTYWC  426 (446)
Q Consensus       422 ~~~~~  426 (446)
                      ..+-+
T Consensus       501 AtleE  505 (885)
T KOG2023|consen  501 ATLEE  505 (885)
T ss_pred             HHHHH
Confidence            76643

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.54  E-value=3.7e-13  Score=102.10  Aligned_cols=119  Identities=35%  Similarity=0.606  Sum_probs=110.3

Q ss_pred             HHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 043676           40 KVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDS  119 (446)
Q Consensus        40 ~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~  119 (446)
                      .+.+.|+++.+++++.+++ +.++..++++|++++...++....+++.|+++.+++++.++++.++..++++|++++...
T Consensus         2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            3567899999999999998 899999999999999977999999999999999999999999999999999999999888


Q ss_pred             hHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676          120 PRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR  160 (446)
Q Consensus       120 ~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  160 (446)
                      +.....+.+.|.++.++..+ .+.+..+++.++++|.+++.
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence            87888888999999999999 66689999999999999874

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=5.2e-12  Score=117.40  Aligned_cols=342  Identities=15%  Similarity=0.147  Sum_probs=252.0

Q ss_pred             ChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhH
Q 043676            3 SFPALVAGVWSD-DNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENT   81 (446)
Q Consensus         3 ~i~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~   81 (446)
                      .+|.|+++|+++ ++++...|+++|..++..- ++....+++.+++|.|+.-|..=.+-++.++++.+|-.++.   ++-
T Consensus       212 lvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl-P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR---~H~  287 (1051)
T KOG0168|consen  212 LVPVLVALLSHEHNFDIMLLACRALTYLCEVL-PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISR---RHP  287 (1051)
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHHhhc-cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHh---hcc
Confidence            378999999975 6999999999999998875 56677888999999999888776668999999999999988   445


Q ss_pred             HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676           82 NVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR  160 (446)
Q Consensus        82 ~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  160 (446)
                      ..+.+.|++...+.++..-+..+++.|+.+..|+|..- ++--..+++  .+|.|..+| +..+.+..+.++-++..++.
T Consensus       288 ~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lL-s~~D~k~ies~~ic~~ri~d  364 (1051)
T KOG0168|consen  288 KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLL-SYQDKKPIESVCICLTRIAD  364 (1051)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHH-hhccchhHHHHHHHHHHHHH
Confidence            66788999999999999888999999999999999432 222334444  688899999 77888899999999999988


Q ss_pred             CC-CCCCh---hhhhhhHHHHHHhhcCC----CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCcc---
Q 043676          161 GK-PEPPF---DQVRPALPALAQLVHSN----DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPS---  229 (446)
Q Consensus       161 ~~-~~~~~---~~~~~~~~~l~~ll~~~----~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~---  229 (446)
                      .. +....   ....+.+....+++.-.    +..+-...++.+..++...+.....+.+.++...+..++...+..   
T Consensus       365 ~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~na  444 (1051)
T KOG0168|consen  365 GFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANA  444 (1051)
T ss_pred             hcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCccc
Confidence            76 22222   23367777777877644    345666777888888888787777788888888888877642110   


Q ss_pred             -----c-h-----hHHH----------------------------------------------------HHHHHh-----
Q 043676          230 -----V-L-----TPAL----------------------------------------------------RTVGNI-----  241 (446)
Q Consensus       230 -----~-~-----~~a~----------------------------------------------------~~l~~l-----  241 (446)
                           + +     ....                                                    +.+..+     
T Consensus       445 s~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~  524 (1051)
T KOG0168|consen  445 SLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTG  524 (1051)
T ss_pred             ccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcc
Confidence                 0 0     0000                                                    011100     


Q ss_pred             -----------------hcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc-CCHHHHHHHHHc-CChH
Q 043676          242 -----------------VTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA-GNREQIQAVIDA-GLIR  302 (446)
Q Consensus       242 -----------------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~-~~i~  302 (446)
                                       ....++..+.+. ..+++.|+++..+.-++.||..++.+|..+.. .+.+.+..+++. .+-.
T Consensus       525 t~~~~~dkl~~~~r~~~l~nqpel~q~F~-~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS  603 (1051)
T KOG0168|consen  525 TSRKQQDKLNGSAREGLLKNQPELLQSFG-KDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSS  603 (1051)
T ss_pred             cchhhhhhcCCchhhhhhhcCHHHHHHHH-HHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHH
Confidence                             001111222222 23678888888877789999999999999976 577888877764 4555


Q ss_pred             HHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhccc
Q 043676          303 PIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLL  352 (446)
Q Consensus       303 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~  352 (446)
                      .+-.++.+++..+..-|+...--+...-.+.....|..+|++..+-++..
T Consensus       604 ~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~  653 (1051)
T KOG0168|consen  604 HLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV  653 (1051)
T ss_pred             HHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence            56678888899888888887777777655566777888898888888776

>PTZ00429 beta-adaptin; Provisional

Probab=99.49  E-value=4.2e-10  Score=108.80  Aligned_cols=293  Identities=14%  Similarity=0.081  Sum_probs=206.7

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV   83 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   83 (446)
                      +.-|-+.|.+.+...+..+++.+......+ .+..      .+.+..++++.+++ .++|..+...+.+++...++....
T Consensus        34 ~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~DvS------~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pelalL  105 (746)
T PTZ00429         34 GAELQNDLNGTDSYRKKAAVKRIIANMTMG-RDVS------YLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKALL  105 (746)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCch------HHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHHHH
Confidence            455677788888888888887665544433 3322      35777788899998 899999999999998866654322


Q ss_pred             HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 043676           84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKP  163 (446)
Q Consensus        84 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  163 (446)
                           .++.+.+=+.++++.+|..|+++++++-.  +...+.     .+..+.+.+ .+.++-+++.|+.++..+....+
T Consensus       106 -----aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~-----l~~~lkk~L-~D~~pYVRKtAalai~Kly~~~p  172 (746)
T PTZ00429        106 -----AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY-----TLEPLRRAV-ADPDPYVRKTAAMGLGKLFHDDM  172 (746)
T ss_pred             -----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH-----HHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhCc
Confidence                 36788888999999999999999998862  222222     345667777 78899999999999999987654


Q ss_pred             CCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 043676          164 EPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVT  243 (446)
Q Consensus       164 ~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~  243 (446)
                      .  .....++++.+..++.+.|+.+..+|+.++..+....+....  ...+.+..++..+...++-.+...+.++...  
T Consensus       173 e--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y--  246 (746)
T PTZ00429        173 Q--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQ--  246 (746)
T ss_pred             c--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhc--
Confidence            2  334467889999999999999999999999999876654332  2335567777777766666666666666443  


Q ss_pred             CCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHH
Q 043676          244 GDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG-NREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWA  322 (446)
Q Consensus       244 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a  322 (446)
                       .+......  ..++..+...|++. ++.|.-+|+.++.++... +++....+.. .+.++++.+ .+++++++..++..
T Consensus       247 -~P~~~~e~--~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L-~ss~~eiqyvaLr~  320 (746)
T PTZ00429        247 -RPSDKESA--ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTL-SRRDAETQYIVCKN  320 (746)
T ss_pred             -CCCCcHHH--HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHh-hCCCccHHHHHHHH
Confidence             22222111  24677888889998 899999999999988653 2333332221 233556665 34667888888877


Q ss_pred             HHHhccC
Q 043676          323 ISNATSG  329 (446)
Q Consensus       323 L~~l~~~  329 (446)
                      +..+...
T Consensus       321 I~~i~~~  327 (746)
T PTZ00429        321 IHALLVI  327 (746)
T ss_pred             HHHHHHH
Confidence            7666553

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.49  E-value=2.8e-11  Score=108.39  Aligned_cols=308  Identities=16%  Similarity=0.108  Sum_probs=208.7

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV   83 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   83 (446)
                      ...++..|..+|..++..|+..++.+++.. ..........-..+.+...+++++....+..|+.+|..+.. .++.|..
T Consensus       103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~-~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~  180 (429)
T cd00256         103 WEPFFNLLNRQDQFIVHMSFSILAKLACFG-LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFA  180 (429)
T ss_pred             hHHHHHHHcCCchhHHHHHHHHHHHHHhcC-ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHH
Confidence            456777888999999999999999998764 22222112222455667777765446888899999999998 7899999


Q ss_pred             HHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676           84 VIDHGAVPIFVKLLSS--PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG  161 (446)
Q Consensus        84 ~~~~~~i~~L~~~L~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  161 (446)
                      +.+.++++.|..+|+.  .+..++..++.+++-++...+ ........+.++.++.++.....+.+.+-++.+|.|+...
T Consensus       181 f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~  259 (429)
T cd00256         181 FVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISK  259 (429)
T ss_pred             HHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence            9999999999999986  256889999999999996554 5556667889999999998888999999999999999986


Q ss_pred             CCCC------ChhhhhhhHHHHHHhhcCC---CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC----Cc
Q 043676          162 KPEP------PFDQVRPALPALAQLVHSN---DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHP----SP  228 (446)
Q Consensus       162 ~~~~------~~~~~~~~~~~l~~ll~~~---~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~----~~  228 (446)
                      ....      ........++.++..|...   |+++.+..-..-..+-..       +-+..-++.-..=+.++    +|
T Consensus       260 ~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~-------~k~ltsfD~Y~~El~sg~L~WSp  332 (429)
T cd00256         260 RVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNS-------VQDLSSFDEYKSELRSGRLHWSP  332 (429)
T ss_pred             ccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH-------HHHcCCHHHHHHHHhcCCccCCC
Confidence            4111      1112232344445555432   666655433222222111       00111111111111111    22


Q ss_pred             cchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH
Q 043676          229 SVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLL  308 (446)
Q Consensus       229 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll  308 (446)
                      .-+....| -.|.....+..      ..++..|+++|..+.++.+..-||.-++.++...|..+..+-+.|+=..+++++
T Consensus       333 ~H~se~FW-~EN~~kf~~~~------~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm  405 (429)
T cd00256         333 VHKSEKFW-RENADRLNEKN------YELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLL  405 (429)
T ss_pred             CCCCchHH-HHHHHHHHhcc------hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHh
Confidence            22222332 11222111111      235678899996554788888899999999998888887777899999999999


Q ss_pred             hcCCcchHHHHHHHHHHhcc
Q 043676          309 QNAEFDTKKEAAWAISNATS  328 (446)
Q Consensus       309 ~~~~~~v~~~a~~aL~~l~~  328 (446)
                      .++|++|+.+|+.|+..+..
T Consensus       406 ~h~d~~Vr~eAL~avQklm~  425 (429)
T cd00256         406 NHEDPNVRYEALLAVQKLMV  425 (429)
T ss_pred             cCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999988754

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.49  E-value=9.7e-13  Score=99.76  Aligned_cols=118  Identities=32%  Similarity=0.510  Sum_probs=109.7

Q ss_pred             HHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCH
Q 043676          210 VIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNR  289 (446)
Q Consensus       210 ~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~  289 (446)
                      +.+.|+++.+++++.+.++.++..+++++++++...+.....+.+.++++.+..++.++ ++.++..++|+|+|++...+
T Consensus         3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence            56779999999999999999999999999999998888888888999999999999998 99999999999999998877


Q ss_pred             HHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhcc
Q 043676          290 EQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATS  328 (446)
Q Consensus       290 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  328 (446)
                      .....+.+.|+++.+++++.+.+..+++.++++|.+++.
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            777888889999999999999999999999999999863

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.46  E-value=4.8e-11  Score=110.01  Aligned_cols=360  Identities=13%  Similarity=0.076  Sum_probs=232.1

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHh
Q 043676            7 LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVID   86 (446)
Q Consensus         7 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~   86 (446)
                      +.+.|++..|...-.|+.++..++..+ -+. ...  .++++.|+.....+....++..++.+++-++.+-......-..
T Consensus        95 il~tL~~~ep~~~s~Aaq~va~IA~~E-lP~-n~w--p~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~s  170 (859)
T KOG1241|consen   95 ILRTLGSPEPRRPSSAAQCVAAIACIE-LPQ-NQW--PELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQS  170 (859)
T ss_pred             HHHHcCCCCCCccchHHHHHHHHHHhh-Cch-hhC--HHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence            455677777777778888888887764 111 111  1456666666666663469999999999999833222222223


Q ss_pred             cCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCC-hHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 043676           87 HGAVPIFVKLLSS--PSDDVREQAVWALGNVAGDSPRCRDLVLSQGA-LIPLLAELNEHAKLSMLRNATRTLSNFCRGKP  163 (446)
Q Consensus        87 ~~~i~~L~~~L~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~-i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  163 (446)
                      +.++..++...+.  ++..+|-.|+.+|.|--.....+-..-.+.+. +...+..- ++++.+++..+..||..+..-..
T Consensus       171 N~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEat-q~~d~~i~~aa~~ClvkIm~LyY  249 (859)
T KOG1241|consen  171 NDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEAT-QSPDEEIQVAAFQCLVKIMSLYY  249 (859)
T ss_pred             hHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecc-cCCcHHHHHHHHHHHHHHHHHHH
Confidence            4667778877765  67899999999998866332211111112222 22223333 67899999999999998876531


Q ss_pred             CCC-hhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcH---------------HHHHHHH---hCcHHHHHHhcC
Q 043676          164 EPP-FDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTND---------------KIQAVIE---AGVCPRLVELLG  224 (446)
Q Consensus       164 ~~~-~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~---------------~~~~~~~---~~~~~~l~~ll~  224 (446)
                      ... .-.....++.-..-++++++++...++..-+++|...-+               ....+.+   .+++|.|+++|.
T Consensus       250 ~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~  329 (859)
T KOG1241|consen  250 EFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLT  329 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHH
Confidence            111 111133455555666788999999999988888743221               0111111   156788888876


Q ss_pred             C-------CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043676          225 H-------PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVID  297 (446)
Q Consensus       225 ~-------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~  297 (446)
                      .       +++.....|..||.-++....+.   ++. .+++.+-+-++++ +.+-|..|+.+++.+..+.......-+.
T Consensus       330 kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~---Iv~-~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt~iV  404 (859)
T KOG1241|consen  330 KQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD---IVP-HVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKLTPIV  404 (859)
T ss_pred             hCCCCcccccCcHHHHHHHHHHHHHHHhccc---chh-hhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhhhHHH
Confidence            5       34567777777777776544332   222 4566666678888 9999999999999998775555555555


Q ss_pred             cCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhh
Q 043676          298 AGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAER  377 (446)
Q Consensus       298 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~  377 (446)
                      .+.+|.++.++.++...++..+.|+++.++................+..+..-+ .+.|.+..+++|++.++.+...+..
T Consensus       405 ~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL-~DePrva~N~CWAf~~Laea~~eA~  483 (859)
T KOG1241|consen  405 IQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGL-NDEPRVASNVCWAFISLAEAAYEAA  483 (859)
T ss_pred             hhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHh-hhCchHHHHHHHHHHHHHHHHHHhc
Confidence            589999999999888899999999999998763211111111111222222222 3578899999999999997666554

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.44  E-value=7.5e-11  Score=108.77  Aligned_cols=327  Identities=17%  Similarity=0.172  Sum_probs=226.4

Q ss_pred             hHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhH
Q 043676            4 FPALVAGVWS--DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENT   81 (446)
Q Consensus         4 i~~l~~~l~s--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~   81 (446)
                      +..+++...+  .+..+|+.|+.+|.+-+...+.....+.-.+-++...++.-++++ .+++..|..||..+..-.-+..
T Consensus       174 LtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d-~~i~~aa~~ClvkIm~LyY~~m  252 (859)
T KOG1241|consen  174 LTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPD-EEIQVAAFQCLVKIMSLYYEFM  252 (859)
T ss_pred             HHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence            4456666664  467899999999998776653344455556667778888889999 8999999999999998555555


Q ss_pred             HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHH---HHH---------------HHcCChHHHHHHhcc-c
Q 043676           82 NVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCR---DLV---------------LSQGALIPLLAELNE-H  142 (446)
Q Consensus        82 ~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~---~~~---------------~~~~~i~~l~~~l~~-~  142 (446)
                      ..-+.......-+.-++++++++..+++..++++|...-...   ...               .-.+.+|.|+++|.+ +
T Consensus       253 ~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqd  332 (859)
T KOG1241|consen  253 EPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQD  332 (859)
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCC
Confidence            555555667777778889999999999999999994321100   000               112457788888854 2


Q ss_pred             c-----chhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHH
Q 043676          143 A-----KLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCP  217 (446)
Q Consensus       143 ~-----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  217 (446)
                      +     +...-..+-.||.-++.....   ......+|.+-.-++++|..-++.+..+++.+..........-+-.+.++
T Consensus       333 e~~d~DdWnp~kAAg~CL~l~A~~~~D---~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp  409 (859)
T KOG1241|consen  333 EDDDDDDWNPAKAAGVCLMLFAQCVGD---DIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALP  409 (859)
T ss_pred             CCcccccCcHHHHHHHHHHHHHHHhcc---cchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhH
Confidence            2     223444555555544443211   12346677777788899999999999999999988776666566669999


Q ss_pred             HHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHH-HhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHH---
Q 043676          218 RLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCI-INHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQ---  293 (446)
Q Consensus       218 ~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~---  293 (446)
                      .++.++.+++-.++..+.|+++.++.+.++.+... .....++.++..|.+.  +.+...++|++.+++.+..+...   
T Consensus       410 ~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De--Prva~N~CWAf~~Laea~~eA~~s~~  487 (859)
T KOG1241|consen  410 SIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE--PRVASNVCWAFISLAEAAYEAAVSNG  487 (859)
T ss_pred             HHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC--chHHHHHHHHHHHHHHHHHHhccCCC
Confidence            99999998888899999999999998776433222 2334556666666544  68899999999999852211110   


Q ss_pred             ------HHHHcCChHHHHHHHhc---CCcchHHHHHHHHHHhccCCCHHHHHH
Q 043676          294 ------AVIDAGLIRPIVNLLQN---AEFDTKKEAAWAISNATSGGTQEQIKH  337 (446)
Q Consensus       294 ------~~~~~~~i~~L~~ll~~---~~~~v~~~a~~aL~~l~~~~~~~~~~~  337 (446)
                            .+.+ .++..|++..+.   .+..+|..|..+|..+...+..+....
T Consensus       488 qt~~~t~~y~-~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~  539 (859)
T KOG1241|consen  488 QTDPATPFYE-AIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPM  539 (859)
T ss_pred             CCCccchhHH-HHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence                  1111 244455554443   356899999999999998865554433

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=99.40  E-value=3.4e-12  Score=116.93  Aligned_cols=344  Identities=14%  Similarity=0.104  Sum_probs=226.7

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCC-hHHHHHHHHHHHHHcCCChhhHH
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDY-PQLQYEAAWVLINIASGTSENTN   82 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~-~~~~~~a~~~L~~l~~~~~~~~~   82 (446)
                      +..++..++++.+..+...+....++...-+......-.+...+..++..++.+++ ..+......++.+-...  ..+.
T Consensus       718 v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~--r~kp  795 (1172)
T KOG0213|consen  718 VSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGG--RVKP  795 (1172)
T ss_pred             HHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhh--cccc
Confidence            55667778888888888888888877654322223333333456666666666552 22333333333332221  1111


Q ss_pred             HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHH--HHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676           83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD--LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR  160 (446)
Q Consensus        83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~--~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  160 (446)
                      .  -..++..++..|+++++.+|++|+..++.++..-..|.+  .+...|.  .|...| ....+++.-..+.++..+..
T Consensus       796 y--lpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsILgAikaI~n  870 (1172)
T KOG0213|consen  796 Y--LPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSILGAIKAIVN  870 (1172)
T ss_pred             c--hHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHHHHHHHHHHH
Confidence            1  123467778889999999999999999998832222211  2222222  345556 56678888888888877765


Q ss_pred             CC-CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHH
Q 043676          161 GK-PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVG  239 (446)
Q Consensus       161 ~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~  239 (446)
                      .. -....--..+++|.|..+|++...+++++++..++.++...++....---..+.--|+.+|+..+..+|..|...++
T Consensus       871 vigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG  950 (1172)
T KOG0213|consen  871 VIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFG  950 (1172)
T ss_pred             hccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            54 12223345789999999999999999999999999999887754332111233344677777788899999999999


Q ss_pred             HhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHH
Q 043676          240 NIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEA  319 (446)
Q Consensus       240 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a  319 (446)
                      .++..-.       -..++..|+.-|+.. +...|.....+++-.+..+..       ..++|.|++=....+..|+.-.
T Consensus       951 ~IakaIG-------PqdVLatLlnnLkvq-eRq~RvcTtvaIaIVaE~c~p-------FtVLPalmneYrtPe~nVQnGV 1015 (1172)
T KOG0213|consen  951 YIAKAIG-------PQDVLATLLNNLKVQ-ERQNRVCTTVAIAIVAETCGP-------FTVLPALMNEYRTPEANVQNGV 1015 (1172)
T ss_pred             HHHHhcC-------HHHHHHHHHhcchHH-HHHhchhhhhhhhhhhhhcCc-------hhhhHHHHhhccCchhHHHHhH
Confidence            8876322       223566777777766 555555555555544432111       1378888887777888999999


Q ss_pred             HHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHH
Q 043676          320 AWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILK  371 (446)
Q Consensus       320 ~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~  371 (446)
                      +.+++.++....+-...++..  +.|.|.+.|-+.|.--+..+..++..+.-
T Consensus      1016 Lkalsf~FeyigemskdYiya--v~PlleDAlmDrD~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1016 LKALSFMFEYIGEMSKDYIYA--VTPLLEDALMDRDLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred             HHHHHHHHHHHHHHhhhHHHH--hhHHHHHhhccccHHHHHHHHHHHHHHhc
Confidence            999999988755444455443  67888888888999889989988888653

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.37  E-value=2.2e-10  Score=99.01  Aligned_cols=308  Identities=15%  Similarity=0.094  Sum_probs=212.4

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV   83 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   83 (446)
                      .+.++.+|..+|..+...+.+.+..+++.. +.........-....|-..+++..+.+....|++||..+.. -++.|..
T Consensus       116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g-~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~  193 (442)
T KOG2759|consen  116 WLSFLNLLNRQDTFIVEMSFRILSKLACFG-NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYA  193 (442)
T ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-Ccchhhe
Confidence            456788899999988888999999988875 32222111111234455566664447888999999999998 7899999


Q ss_pred             HHhcCChHHHHHhhC-C-CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676           84 VIDHGAVPIFVKLLS-S-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG  161 (446)
Q Consensus        84 ~~~~~~i~~L~~~L~-~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  161 (446)
                      ++...++..++..+. . .+-.++.+.+.+++-++...+ ..+.+...+.++.+..++..+..+.+.+-++.++.|++..
T Consensus       194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~-~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k  272 (442)
T KOG2759|consen  194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPH-AAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK  272 (442)
T ss_pred             eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999888999999883 3 567889999999999995554 4567788889999999998888899999999999999988


Q ss_pred             CCCCChh------hhhhhHHHHHHhhcC---CCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC----CCc
Q 043676          162 KPEPPFD------QVRPALPALAQLVHS---NDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH----PSP  228 (446)
Q Consensus       162 ~~~~~~~------~~~~~~~~l~~ll~~---~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~----~~~  228 (446)
                      .+.+...      ...+-++..++.|..   +|+++....-..-..+-..    .+.+   ...+.-..=+.+    -+|
T Consensus       273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~s----vq~L---sSFDeY~sEl~sG~L~WSP  345 (442)
T KOG2759|consen  273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNS----VQDL---SSFDEYKSELRSGRLEWSP  345 (442)
T ss_pred             CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH----HHhh---ccHHHHHHHHHhCCcCCCc
Confidence            7433222      223334444455543   2566655443332222211    1111   111111111111    122


Q ss_pred             cchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH
Q 043676          229 SVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLL  308 (446)
Q Consensus       229 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll  308 (446)
                      .-+..-.| =.|....++..      ..++..|+.+|+.+.++.+..-|+.-++.+.+..|+.+..+.+.|+=+.+++++
T Consensus       346 ~Hk~e~FW-~eNa~rlnenn------yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Ll  418 (442)
T KOG2759|consen  346 VHKSEKFW-RENADRLNENN------YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLL  418 (442)
T ss_pred             cccccchH-HHhHHHHhhcc------HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHh
Confidence            22222222 11222222222      236788999999886788888899999999999999999899999999999999


Q ss_pred             hcCCcchHHHHHHHHHHhcc
Q 043676          309 QNAEFDTKKEAAWAISNATS  328 (446)
Q Consensus       309 ~~~~~~v~~~a~~aL~~l~~  328 (446)
                      .++|++|+.+|+.|+..+..
T Consensus       419 nh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  419 NHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             cCCCchHHHHHHHHHHHHHh
Confidence            99999999999999988764

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.33  E-value=4.9e-09  Score=90.85  Aligned_cols=322  Identities=16%  Similarity=0.191  Sum_probs=221.8

Q ss_pred             ChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChHHHHHH------HHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676           89 AVPIFVKLLSS-PSDDVREQAVWALGNVAGDSPRCRDLV------LSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG  161 (446)
Q Consensus        89 ~i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~------~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  161 (446)
                      .+.+++.+++. ..++....++..+.-+-+.++.....+      ...-.-..++.++ ...+.-+.....+.++.++..
T Consensus        66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll-~r~d~~iv~~~~~Ils~la~~  144 (442)
T KOG2759|consen   66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLL-NRQDTFIVEMSFRILSKLACF  144 (442)
T ss_pred             HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHH-hcCChHHHHHHHHHHHHHHHh
Confidence            45667777766 345666667766666664443221111      1222356778888 556666777789999998877


Q ss_pred             CCCCChh-hhhhhHHHHHHhhcC-CCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC--CCccchhHHHHH
Q 043676          162 KPEPPFD-QVRPALPALAQLVHS-NDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLTPALRT  237 (446)
Q Consensus       162 ~~~~~~~-~~~~~~~~l~~ll~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~--~~~~~~~~a~~~  237 (446)
                      .+..... ...-....+...+++ .+......+.+||..+...++-+. .++..+++..++..+.+  .+..++...+.|
T Consensus       145 g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~-~~v~adg~~~l~~~l~s~~~~~QlQYqsifc  223 (442)
T KOG2759|consen  145 GNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRY-AFVIADGVSLLIRILASTKCGFQLQYQSIFC  223 (442)
T ss_pred             ccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhh-eeeecCcchhhHHHHhccCcchhHHHHHHHH
Confidence            6332222 223344555556665 577888889999999998877554 46666777888887733  567788899999


Q ss_pred             HHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCH------HHHHHHHHcCChHHHHHHHhcC
Q 043676          238 VGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNR------EQIQAVIDAGLIRPIVNLLQNA  311 (446)
Q Consensus       238 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~------~~~~~~~~~~~i~~L~~ll~~~  311 (446)
                      ++.|+. ++...+.+...+.++.+..++++.....|-.-++.++.|++...+      +....++..++.+.+-.+-+.+
T Consensus       224 iWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rk  302 (442)
T KOG2759|consen  224 IWLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERK  302 (442)
T ss_pred             HHHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcC
Confidence            999987 455556667889999999999887577888889999999987543      4445566766666665555443


Q ss_pred             --CcchHHHHHHHH-------HHhccCC----------------------CHHHHHHHHHcC--ChHHHHhcccCC-CHH
Q 043676          312 --EFDTKKEAAWAI-------SNATSGG----------------------TQEQIKHLVREG--CVKPLCDLLLCS-DPE  357 (446)
Q Consensus       312 --~~~v~~~a~~aL-------~~l~~~~----------------------~~~~~~~l~~~~--~i~~L~~ll~~~-~~~  357 (446)
                        |+++....-..-       ..++...                      -.++...+.+++  ++..|+.+|+.. ||.
T Consensus       303 ysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~  382 (442)
T KOG2759|consen  303 YSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPI  382 (442)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCc
Confidence              444432222111       1111110                      124555655543  588899999765 488


Q ss_pred             HHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 043676          358 IVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWC  426 (446)
Q Consensus       358 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  426 (446)
                      +...|+.=+..+++..+..             +..+...||-+.+.+|++|++++|+-.|..+++++..
T Consensus       383 iL~VAc~DIge~Vr~yP~g-------------k~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  383 ILCVACHDIGEYVRHYPEG-------------KAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             eeehhhhhHHHHHHhCchH-------------hHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            8888999999999988876             5889999999999999999999999999988887653

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.32  E-value=1.4e-08  Score=94.41  Aligned_cols=327  Identities=14%  Similarity=0.167  Sum_probs=243.3

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCh--
Q 043676           45 GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSS--PSDDVREQAVWALGNVAGDSP--  120 (446)
Q Consensus        45 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~--~~~~v~~~a~~~l~~l~~~~~--  120 (446)
                      ..++.|+.-+.+..-.+-|+.|++.|..++.   ++|..+..+| +++|++.|+.  .++++...++.++.++....+  
T Consensus        22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~   97 (970)
T KOG0946|consen   22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP   97 (970)
T ss_pred             hHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence            4588898888877767889999999999987   7888887766 8999999986  579999999999999985432  


Q ss_pred             ------H--------HH-HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC---ChhhhhhhHHHHHHhhc
Q 043676          121 ------R--------CR-DLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEP---PFDQVRPALPALAQLVH  182 (446)
Q Consensus       121 ------~--------~~-~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~~~~l~~ll~  182 (446)
                            .        .. ..+...+.|..++..+ ...|..+|..++..+..+....+..   .....+.++..++.+|.
T Consensus        98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~  176 (970)
T KOG0946|consen   98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR  176 (970)
T ss_pred             hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence                  1        11 1233456677888888 7778999999999999998876432   22344788999999999


Q ss_pred             CCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC----CccchhHHHHHHHHhhcCCchhhHHHHhcCCh
Q 043676          183 SNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHP----SPSVLTPALRTVGNIVTGDDFQTQCIINHGAV  258 (446)
Q Consensus       183 ~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~----~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~  258 (446)
                      +..+.+|..++..|..++..++...+.+.=.+++..|+.++...    ..-|...|+..+.||...+..+...+.+.+.+
T Consensus       177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i  256 (970)
T KOG0946|consen  177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYI  256 (970)
T ss_pred             hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccH
Confidence            99999999999999999998886666555568999999999873    22477889999999999998888888899999


Q ss_pred             HHHHHHhccCc--h--------HH--HHHHHHHHHHHHhc-CC-----HHHHHHHHHcCChHHHHHHHhcC--CcchHHH
Q 043676          259 PYLLDMLVHNH--E--------EI--IKKEISWIISNITA-GN-----REQIQAVIDAGLIRPIVNLLQNA--EFDTKKE  318 (446)
Q Consensus       259 ~~l~~~l~~~~--~--------~~--v~~~a~~~l~~l~~-~~-----~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~  318 (446)
                      +.+.++|....  +        .+  -...++.++..+.. ++     ..+...+.+.+++..|+.++.+.  ..+++..
T Consensus       257 ~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlte  336 (970)
T KOG0946|consen  257 PRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTE  336 (970)
T ss_pred             HHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHH
Confidence            99998775321  1        11  12345666666654 21     22334566789999999998876  4588999


Q ss_pred             HHHHHHHhccCCCHHHHHHHHHcCC----------hHHHHhcccC-CCHHHHHHHHHHHHHHHHhhhhhh
Q 043676          319 AAWAISNATSGGTQEQIKHLVREGC----------VKPLCDLLLC-SDPEIVTVCLIGLENILKVGEAER  377 (446)
Q Consensus       319 a~~aL~~l~~~~~~~~~~~l~~~~~----------i~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~  377 (446)
                      +..+++++..++ ..+...|....+          +-.++.+..+ ..+.+|..++.++..++......+
T Consensus       337 siitvAevVRgn-~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq  405 (970)
T KOG0946|consen  337 SIITVAEVVRGN-ARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQ  405 (970)
T ss_pred             HHHHHHHHHHhc-hHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhH
Confidence            999999998763 444444443211          1123333333 456788888899988877655543

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.26  E-value=1.3e-08  Score=93.78  Aligned_cols=334  Identities=16%  Similarity=0.136  Sum_probs=214.5

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHH
Q 043676            5 PALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVV   84 (446)
Q Consensus         5 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~   84 (446)
                      +.++.+|++.-|.+|..|...+.++...- ++..+     ..+|.|.+-|.+++ +.++..|+.+++.++..+|.+--. 
T Consensus       147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr-----~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL~-  218 (877)
T KOG1059|consen  147 DDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALR-----PCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYLQ-  218 (877)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHh-----hhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCccccc-
Confidence            34566777888888888888888765542 22221     35888888888888 888888888888888877655332 


Q ss_pred             HhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHh--hcC
Q 043676           85 IDHGAVPIFVKLLSS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNF--CRG  161 (446)
Q Consensus        85 ~~~~~i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l--~~~  161 (446)
                          .-|.+.++|.+ .+.=+....+..+++|+.-.|.....     .++++.+++....-..+...+..++...  +.+
T Consensus       219 ----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g  289 (877)
T KOG1059|consen  219 ----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSSG  289 (877)
T ss_pred             ----ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence                34677777765 33334556677788887666655443     5778888884433344555555554332  222


Q ss_pred             CCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHh
Q 043676          162 KPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI  241 (446)
Q Consensus       162 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l  241 (446)
                      . ........-+++.|-.++.+.|+.+++-.+.+++.+....+...+     .--+.++++|.+.|+.+|..|+..+.-+
T Consensus       290 ~-~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq-----a~kdlIlrcL~DkD~SIRlrALdLl~gm  363 (877)
T KOG1059|consen  290 M-SDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ-----AHKDLILRCLDDKDESIRLRALDLLYGM  363 (877)
T ss_pred             C-CCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH-----HhHHHHHHHhccCCchhHHHHHHHHHHH
Confidence            2 123344566788888899999999999999999999988776655     3347789999999999999999999888


Q ss_pred             hcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcC-ChHHHHHHHhcCCcchHHHHH
Q 043676          242 VTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAG-LIRPIVNLLQNAEFDTKKEAA  320 (446)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~-~i~~L~~ll~~~~~~v~~~a~  320 (446)
                      ...  .+...     ++..|+..+...+....|.+.+.-+..+|+.+..  +++.+-. .+..++++.+-...+.-....
T Consensus       364 Vsk--kNl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~snY--~~ItdFEWYlsVlveLa~l~~~~~G~~I~  434 (877)
T KOG1059|consen  364 VSK--KNLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQSNY--QYITDFEWYLSVLVELARLEGTRHGSLIA  434 (877)
T ss_pred             hhh--hhHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhh--hhhhhHHHHHHHHHHHHhccccchhhHHH
Confidence            762  23332     4566776665553557787777777777664322  2333322 366677777654443333444


Q ss_pred             HHHHHhccCCCHHHHHHHHHcCChHHHHhccc-----------CCCHHHHHHHHHHHHHHHHhhhhh
Q 043676          321 WAISNATSGGTQEQIKHLVREGCVKPLCDLLL-----------CSDPEIVTVCLIGLENILKVGEAE  376 (446)
Q Consensus       321 ~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-----------~~~~~~~~~~~~~l~~l~~~~~~~  376 (446)
                      .-+.+++.. -+..+.+     .+..+..++.           ..-.++...|.|++..+...-++.
T Consensus       435 eQi~Dv~iR-V~~iR~f-----sV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven~  495 (877)
T KOG1059|consen  435 EQIIDVAIR-VPSIRPF-----SVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVENP  495 (877)
T ss_pred             HHHHHHhee-chhhhHh-----HHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhCH
Confidence            444444432 1222222     1222222222           123578888999999877765554

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=2.2e-09  Score=91.76  Aligned_cols=190  Identities=18%  Similarity=0.210  Sum_probs=158.8

Q ss_pred             CCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHH
Q 043676          184 NDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLD  263 (446)
Q Consensus       184 ~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~  263 (446)
                      .+.+-++.++.-|..++.+-+ ....+...|+...++..+.+.+..+|+.|+++|+..+..+|.....+++.++++.|+.
T Consensus        95 ~~le~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~  173 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK  173 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence            367777888888888887655 4445888899999999999999999999999999999999999999999999999999


Q ss_pred             HhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc--CCcchHHHHHHHHHHhccCCCHHHHHHHHHc
Q 043676          264 MLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQN--AEFDTKKEAAWAISNATSGGTQEQIKHLVRE  341 (446)
Q Consensus       264 ~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~  341 (446)
                      ++.+..+..+|..|.++++.+....+.....+...++...|.+.+++  .+...+..++..+..+.... ......+...
T Consensus       174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~-~s~~d~~~~~  252 (342)
T KOG2160|consen  174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED-KSDEDIASSL  252 (342)
T ss_pred             HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh-hhhhhHHHHh
Confidence            99887677888999999999999888888999988889999999998  56788999999999998753 2333344556


Q ss_pred             CChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhh
Q 043676          342 GCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEA  375 (446)
Q Consensus       342 ~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~  375 (446)
                      +....+..+....+.++...++.++..++.....
T Consensus       253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~  286 (342)
T KOG2160|consen  253 GFQRVLENLISSLDFEVNEAALTALLSLLSELST  286 (342)
T ss_pred             hhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhh
Confidence            6677777788888888998888888776654433

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=9.8e-10  Score=93.83  Aligned_cols=186  Identities=22%  Similarity=0.198  Sum_probs=157.2

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHH
Q 043676           13 SDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPI   92 (446)
Q Consensus        13 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~   92 (446)
                      +.+.+-+..|+.-|..++..  -++...+...|++..++..+++++ ..+|..|+++++..+..+|.....+++.|+++.
T Consensus        94 s~~le~ke~ald~Le~lve~--iDnAndl~~~ggl~~ll~~l~~~~-~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~  170 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELVED--IDNANDLISLGGLVPLLGYLENSD-AELRELAARVIGTAVQNNPKSQEQVIELGALSK  170 (342)
T ss_pred             cCCHHHHHHHHHHHHHHHHh--hhhHHhHhhccCHHHHHHHhcCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHH
Confidence            45788888999999888776  788899999999999999999999 899999999999999999999999999999999


Q ss_pred             HHHhhCC-CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccc-cchhHHHHHHHHHHHhhcCCCC-CChhh
Q 043676           93 FVKLLSS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEH-AKLSMLRNATRTLSNFCRGKPE-PPFDQ  169 (446)
Q Consensus        93 L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~-~~~~~  169 (446)
                      |+..+.+ .+..++..|+.+++.+....+.....+...++...|...+... .+..+++.++..+..+...... .....
T Consensus       171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~  250 (342)
T KOG2160|consen  171 LLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS  250 (342)
T ss_pred             HHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            9999987 4567889999999999999988888899999999999999432 6788999999999999888733 33333


Q ss_pred             hhhhHHHHHHhhcCCCHhHHHHHHHHHHHhcc
Q 043676          170 VRPALPALAQLVHSNDEDVLTYACWSLSYLAD  201 (446)
Q Consensus       170 ~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~  201 (446)
                      ..++...+..+....+.++.+.++.++..+..
T Consensus       251 ~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  251 SLGFQRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             HhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            34555566666667788888888887776553

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=99.25  E-value=9.5e-12  Score=111.87  Aligned_cols=265  Identities=17%  Similarity=0.132  Sum_probs=185.6

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHH--HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC
Q 043676           88 GAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCR--DLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEP  165 (446)
Q Consensus        88 ~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~--~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  165 (446)
                      -++..+++.|+++.+.+|+.|+...+.++..-..|.  ..+...|.  .|..-+ ....+++.-..+.+++.+.......
T Consensus       604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~  680 (975)
T COG5181         604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSVHRFR  680 (975)
T ss_pred             HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhhhccc
Confidence            356788889999999999999999988873222111  12222222  344445 5567888888888887776654332


Q ss_pred             Ch-hhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcC
Q 043676          166 PF-DQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTG  244 (446)
Q Consensus       166 ~~-~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~  244 (446)
                      .+ .-..+++|.+..+|++...++..+.+..++.++...++....---..+.--|+..|++.+.++|..|...++.++..
T Consensus       681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a  760 (975)
T COG5181         681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA  760 (975)
T ss_pred             ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence            22 24578999999999999999999999999999988775433211123334567777888899999999999888763


Q ss_pred             CchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHH
Q 043676          245 DDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG-NREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAI  323 (446)
Q Consensus       245 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL  323 (446)
                      -..       ..++..|+.-|+.. +...|.....+++-.+.. .+.        .++|.|+.=....+..++.-.+.++
T Consensus       761 iGP-------qdvL~~LlnnLkvq-eRq~RvctsvaI~iVae~cgpf--------sVlP~lm~dY~TPe~nVQnGvLkam  824 (975)
T COG5181         761 IGP-------QDVLDILLNNLKVQ-ERQQRVCTSVAISIVAEYCGPF--------SVLPTLMSDYETPEANVQNGVLKAM  824 (975)
T ss_pred             cCH-------HHHHHHHHhcchHH-HHHhhhhhhhhhhhhHhhcCch--------hhHHHHHhcccCchhHHHHhHHHHH
Confidence            222       23566677777766 555555555555544431 121        3678887777777889999999999


Q ss_pred             HHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhh
Q 043676          324 SNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVG  373 (446)
Q Consensus       324 ~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~  373 (446)
                      +.+..........++..  ..|.|.+.|.+.|+--+..+...+..+.-.+
T Consensus       825 ~fmFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~Lnc  872 (975)
T COG5181         825 CFMFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLVLNC  872 (975)
T ss_pred             HHHHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence            99988765555555443  5778888889999999999999888876543

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.24  E-value=1.4e-08  Score=94.85  Aligned_cols=364  Identities=14%  Similarity=0.123  Sum_probs=220.9

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHH
Q 043676            6 ALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVI   85 (446)
Q Consensus         6 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~   85 (446)
                      .+.+.|++.+..+.-.|+.+|.++++.   +    ++. .+.|..-+++++++ +-++..|+.|...+....|+..+.+ 
T Consensus       111 slknDL~s~nq~vVglAL~alg~i~s~---E----mar-dlapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e~f-  180 (866)
T KOG1062|consen  111 SLKNDLNSSNQYVVGLALCALGNICSP---E----MAR-DLAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVEHF-  180 (866)
T ss_pred             HHHhhccCCCeeehHHHHHHhhccCCH---H----HhH-HhhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHHHh-
Confidence            344556677777777777777776653   2    111 45677777788877 7888888888888777666655443 


Q ss_pred             hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcc--------------ccchhHHHHH
Q 043676           86 DHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE--------------HAKLSMLRNA  151 (446)
Q Consensus        86 ~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--------------~~~~~~~~~a  151 (446)
                          ++...++|.+.+..|...++..+..+|..++..-..+.+  .++.++..|++              -++|-++..+
T Consensus       181 ----~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~i  254 (866)
T KOG1062|consen  181 ----VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRI  254 (866)
T ss_pred             ----hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHH
Confidence                566667777777777777777777777665544333332  45555555521              1245567777


Q ss_pred             HHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCC------CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC
Q 043676          152 TRTLSNFCRGKPEPPFDQVRPALPALAQLVHSN------DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH  225 (446)
Q Consensus       152 ~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~------~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~  225 (446)
                      ++.|.-+-++++. ......   ..|.+...+.      -..+...+..++..+-....-+.      -++..|-++|.+
T Consensus       255 LrlLriLGq~d~d-aSd~M~---DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~Lrv------lainiLgkFL~n  324 (866)
T KOG1062|consen  255 LRLLRILGQNDAD-ASDLMN---DILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRV------LAINILGKFLLN  324 (866)
T ss_pred             HHHHHHhcCCCcc-HHHHHH---HHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHH------HHHHHHHHHhcC
Confidence            7777777666422 111122   2233333321      24566666666666554433211      345677778888


Q ss_pred             CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHH
Q 043676          226 PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIV  305 (446)
Q Consensus       226 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~  305 (446)
                      .+..+|..|+..|.......+...+.-     =..++++|+++ +..+|..|...+..+...  .++.     .++..|+
T Consensus       325 ~d~NirYvaLn~L~r~V~~d~~avqrH-----r~tIleCL~Dp-D~SIkrralELs~~lvn~--~Nv~-----~mv~eLl  391 (866)
T KOG1062|consen  325 RDNNIRYVALNMLLRVVQQDPTAVQRH-----RSTILECLKDP-DVSIKRRALELSYALVNE--SNVR-----VMVKELL  391 (866)
T ss_pred             CccceeeeehhhHHhhhcCCcHHHHHH-----HHHHHHHhcCC-cHHHHHHHHHHHHHHhcc--ccHH-----HHHHHHH
Confidence            888888888888888887666544432     35689999999 999999999988888543  3333     2566789


Q ss_pred             HHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCc
Q 043676          306 NLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGD  385 (446)
Q Consensus       306 ~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~  385 (446)
                      ..|...+++.+...+.-+..++..-.|+.+=+      +..+...+...-.-++..+...+..++..+....+-    +.
T Consensus       392 ~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~------idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~----y~  461 (866)
T KOG1062|consen  392 EFLESSDEDFKADIASKIAELAEKFAPDKRWH------IDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHE----YA  461 (866)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHhcCCcchhH------HHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhh----HH
Confidence            99998899999999999998887655544322      455556665544334443343444443333111100    00


Q ss_pred             cchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 043676          386 VNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYW  425 (446)
Q Consensus       386 ~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  425 (446)
                      ...+...+.+.       .++.-+.+.+..-|.|+|..|-
T Consensus       462 ~~rLy~a~~~~-------~~~~is~e~l~qVa~W~IGEYG  494 (866)
T KOG1062|consen  462 VLRLYLALSED-------TLLDISQEPLLQVASWCIGEYG  494 (866)
T ss_pred             HHHHHHHHhhh-------hhhhhhhhhHHHHHHHHhhhhh
Confidence            01111111111       1333444556788889998875

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.17  E-value=8.3e-09  Score=95.96  Aligned_cols=300  Identities=15%  Similarity=0.186  Sum_probs=216.5

Q ss_pred             ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCC--CHhHHHHHHHHHHHhccCCc----
Q 043676          131 ALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSN--DEDVLTYACWSLSYLADGTN----  204 (446)
Q Consensus       131 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~v~~~~~~~l~~l~~~~~----  204 (446)
                      .|+.|+.....++-.+=|+.|+..|..+++..   +..+...+++.+++.|+.+  |+++...++.++.++..+.+    
T Consensus        23 TI~kLcDRvessTL~eDRR~A~rgLKa~srkY---R~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v   99 (970)
T KOG0946|consen   23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSRKY---REEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEV   99 (970)
T ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHHHHHHH---HHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhh
Confidence            47788888866677788999999999998763   2334466788888888865  89999999999999987653    


Q ss_pred             --HHH----------HH-HHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHH--hcCChHHHHHHhccCc
Q 043676          205 --DKI----------QA-VIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCII--NHGAVPYLLDMLVHNH  269 (446)
Q Consensus       205 --~~~----------~~-~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~~~~~~~l~~~l~~~~  269 (446)
                        +..          .. +...+.+..++..+...+..||..+...+.++.++.+...+..+  ..-++..++.+|.+. 
T Consensus       100 ~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds-  178 (970)
T KOG0946|consen  100 MDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS-  178 (970)
T ss_pred             cccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh-
Confidence              111          11 22347889999999999999999999999999876665544443  567899999999999 


Q ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC---C-cchHHHHHHHHHHhccCCCHHHHHHHHHcCChH
Q 043676          270 EEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA---E-FDTKKEAAWAISNATSGGTQEQIKHLVREGCVK  345 (446)
Q Consensus       270 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---~-~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~  345 (446)
                      ...+|.+++..|+.++.+++...+.+.=.+++..|+.++..+   + .-|...|+..+.|+..++ ..+...|.+.+.++
T Consensus       179 rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N-~SNQ~~FrE~~~i~  257 (970)
T KOG0946|consen  179 REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNN-ISNQNFFREGSYIP  257 (970)
T ss_pred             hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhC-cchhhHHhccccHH
Confidence            889999999999999988776655555568999999999864   2 368889999999999874 45567778889999


Q ss_pred             HHHhcccC---CCH--------HH--HHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCC--
Q 043676          346 PLCDLLLC---SDP--------EI--VTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDN--  410 (446)
Q Consensus       346 ~L~~ll~~---~~~--------~~--~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~--  410 (446)
                      .|..+|..   .|.        .+  ...++.++..++.-+...       +..+...+.+..+++++.|..+..|+.  
T Consensus       258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~-------~~~~q~qk~l~ss~ll~~Lc~il~~~~vp  330 (970)
T KOG0946|consen  258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTS-------SITHQNQKALVSSHLLDVLCTILMHPGVP  330 (970)
T ss_pred             HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcH-------HHHHHHHHHHHHcchHHHHHHHHcCCCCc
Confidence            99988753   221        12  233455555555432222       122223478899999999999987773  


Q ss_pred             HHHHHHHHHHHHHhcCCCCCcccccccccccC
Q 043676          411 NEIHEKSVKIFKTYWCGRNEEEDALGSNVITN  442 (446)
Q Consensus       411 ~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~  442 (446)
                      .+|...+.-.......+...--.++++-++.+
T Consensus       331 ~dIltesiitvAevVRgn~~nQ~~F~~v~~p~  362 (970)
T KOG0946|consen  331 ADILTESIITVAEVVRGNARNQDEFADVTAPS  362 (970)
T ss_pred             HhHHHHHHHHHHHHHHhchHHHHHHhhccCCC
Confidence            55666655555555544444334444444443

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=2.4e-07  Score=89.15  Aligned_cols=329  Identities=16%  Similarity=0.178  Sum_probs=228.1

Q ss_pred             HHHHHHHHHHHHhcCCCCCcH----HHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHH
Q 043676           18 LQLEATTLSRKLLSFDRNPPI----EKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIF   93 (446)
Q Consensus        18 ~~~~a~~~l~~l~~~~~~~~~----~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L   93 (446)
                      -...++.+|.|+.+.. ++-.    ....--|..+.+...+.....+.++..|+.++..+.. +.++...+...+.+..|
T Consensus      1741 ~v~m~LtAL~Nli~~n-PdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSAN-PDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTL 1818 (2235)
T ss_pred             HHHHHHHHHHHHHhhC-cchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHH
Confidence            4456889999998874 2211    1122236788888888876658999999999988887 88999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC---CCCChhhh
Q 043676           94 VKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK---PEPPFDQV  170 (446)
Q Consensus        94 ~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~  170 (446)
                      +.+|.+ .|..|+.++.+|+.+++.. +......+.|++..+..++..+.+++.+.+++..+..+..+.   |...+...
T Consensus      1819 L~lLHS-~PS~R~~vL~vLYAL~S~~-~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~ 1896 (2235)
T KOG1789|consen 1819 LTLLHS-QPSMRARVLDVLYALSSNG-QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLI 1896 (2235)
T ss_pred             HHHHhc-ChHHHHHHHHHHHHHhcCc-HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehH
Confidence            999976 5788999999999999554 456667789999999999988888999999999999998876   33333222


Q ss_pred             hhhH-----------HHHHHhhcCC--CH------hHHHHHHHHHHHhccC--------------CcHHH----------
Q 043676          171 RPAL-----------PALAQLVHSN--DE------DVLTYACWSLSYLADG--------------TNDKI----------  207 (446)
Q Consensus       171 ~~~~-----------~~l~~ll~~~--~~------~v~~~~~~~l~~l~~~--------------~~~~~----------  207 (446)
                      ...-           ...+.++...  ++      ..+...-..+..++..              -++..          
T Consensus      1897 kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~ 1976 (2235)
T KOG1789|consen 1897 KFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKEC 1976 (2235)
T ss_pred             HhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCc
Confidence            2222           2233444321  22      2223333333333210              00000          


Q ss_pred             -------HHH-------------HHhCcHHHHHHhcCCCCcc--chhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHh
Q 043676          208 -------QAV-------------IEAGVCPRLVELLGHPSPS--VLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDML  265 (446)
Q Consensus       208 -------~~~-------------~~~~~~~~l~~ll~~~~~~--~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l  265 (446)
                             +.+             +-.++++.+..++..+.++  ....-..++-.|.+..+...+.+-..|.+|.++..+
T Consensus      1977 aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am 2056 (2235)
T KOG1789|consen 1977 AVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAM 2056 (2235)
T ss_pred             ccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHH
Confidence                   000             1114556666666654443  222333445556667777777777889999999998


Q ss_pred             ccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChH
Q 043676          266 VHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVK  345 (446)
Q Consensus       266 ~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~  345 (446)
                      ... +..+-..|++.|..++. +.-+...+.....+..+++.++.. +....-|+.+|..+......+...+....|.++
T Consensus      2057 ~~~-n~s~P~SaiRVlH~Lse-n~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvp 2133 (2235)
T KOG1789|consen 2057 CLQ-NTSAPRSAIRVLHELSE-NQFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVP 2133 (2235)
T ss_pred             Hhc-CCcCcHHHHHHHHHHhh-ccHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHH
Confidence            777 66667889999999964 466677777777777788877644 555668999999998876666777778889999


Q ss_pred             HHHhcccC
Q 043676          346 PLCDLLLC  353 (446)
Q Consensus       346 ~L~~ll~~  353 (446)
                      .|.++|+.
T Consensus      2134 yLL~LLd~ 2141 (2235)
T KOG1789|consen 2134 YLLQLLDS 2141 (2235)
T ss_pred             HHHHHhcc
Confidence            99999975

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.15  E-value=1.7e-08  Score=94.23  Aligned_cols=377  Identities=18%  Similarity=0.176  Sum_probs=246.8

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV   83 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   83 (446)
                      +|.+++.....|-.++...-..+.+.+...  +..    ..++++.+++=..+++ +.+|..|++.++.+.-  +.... 
T Consensus        51 F~dvvk~~~T~dlelKKlvyLYl~nYa~~~--P~~----a~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v--~~i~e-  120 (734)
T KOG1061|consen   51 FPDVVKCMQTRDLELKKLVYLYLMNYAKGK--PDL----AILAVNTFLKDCEDPN-PLIRALALRTMGCLRV--DKITE-  120 (734)
T ss_pred             hHHHHhhcccCCchHHHHHHHHHHHhhccC--chH----HHhhhhhhhccCCCCC-HHHHHHHhhceeeEee--hHHHH-
Confidence            566677777777777777777777766653  211    1246777777777888 8888888888777654  22222 


Q ss_pred             HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 043676           84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKP  163 (446)
Q Consensus        84 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  163 (446)
                          .....+.+.+++.++.+|..+..+..++-..++.   .....|.++.|-.++ .+.++.+..+|+.+|..+....+
T Consensus       121 ----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~---~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~~~  192 (734)
T KOG1061|consen  121 ----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPD---LVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHESHP  192 (734)
T ss_pred             ----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCChh---hccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHhCC
Confidence                2368889999999999999999999998866543   566788899999998 68899999999999999998875


Q ss_pred             C-CChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhh
Q 043676          164 E-PPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIV  242 (446)
Q Consensus       164 ~-~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~  242 (446)
                      . .........+..++..+...++.-+..++.++.+-...++....     .++..+...+.+.+..+...+...+.++.
T Consensus       193 ~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~~~  267 (734)
T KOG1061|consen  193 SVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQLV  267 (734)
T ss_pred             CCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHHHH
Confidence            3 44444456666677777666666777777777665554442333     55677888888888888888888888887


Q ss_pred             cCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHH-------------------------HHHH
Q 043676          243 TGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQ-------------------------AVID  297 (446)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~-------------------------~~~~  297 (446)
                      ...+... ..+-...-+.++.++... . +++.-|..-+.-+....++...                         .+..
T Consensus       268 ~~~~~~~-~~~~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~  344 (734)
T KOG1061|consen  268 KYLKQVN-ELLFKKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELAN  344 (734)
T ss_pred             HHHHHHH-HHHHHHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhh
Confidence            6554422 233334556666666655 3 4444444333333322222111                         0010


Q ss_pred             -cC---ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhh
Q 043676          298 -AG---LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVG  373 (446)
Q Consensus       298 -~~---~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~  373 (446)
                       .+   ++..+...-...|.+...++++|+++++....+.       ++++..|.++++.....+...++..+..+++..
T Consensus       345 ~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-------~~cv~~lLell~~~~~yvvqE~~vvi~dilRky  417 (734)
T KOG1061|consen  345 DANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-------NDCVSILLELLETKVDYVVQEAIVVIRDILRKY  417 (734)
T ss_pred             HhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-------hhhHHHHHHHHhhcccceeeehhHHHHhhhhcC
Confidence             00   2222333333347788899999999998753322       568999999999877777777888889888887


Q ss_pred             hhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 043676          374 EAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNE  430 (446)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~  430 (446)
                      ++..            ...+.     ..-..+-+-++|+.+..-.|++.+|-+.-++
T Consensus       418 P~~~------------~~vv~-----~l~~~~~sl~epeak~amiWilg~y~~~i~~  457 (734)
T KOG1061|consen  418 PNKY------------ESVVA-----ILCENLDSLQEPEAKAALIWILGEYAERIEN  457 (734)
T ss_pred             CCch------------hhhhh-----hhcccccccCChHHHHHHHHHHhhhhhccCc
Confidence            7652            11111     0011223345566666777777776655544

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.12  E-value=5.6e-09  Score=92.61  Aligned_cols=227  Identities=15%  Similarity=0.172  Sum_probs=161.4

Q ss_pred             hHHHHHHhccc-cchhHHHHHHHHHHHhhcCCCCCChhhhh-------hhHHHHHHhhcCCCHhHHHHHHHHHHHhccCC
Q 043676          132 LIPLLAELNEH-AKLSMLRNATRTLSNFCRGKPEPPFDQVR-------PALPALAQLVHSNDEDVLTYACWSLSYLADGT  203 (446)
Q Consensus       132 i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-------~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~  203 (446)
                      ...+++++... .+.++.+.++..+..+..+.+........       .....++.++.++|..+...++..+..+....
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~  136 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG  136 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence            55666777655 78899999999999999887644332221       24566777888999999999999999998776


Q ss_pred             cHHHHHHHHhCcHHHHHHhcCC----CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHh------ccCchHHH
Q 043676          204 NDKIQAVIEAGVCPRLVELLGH----PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDML------VHNHEEII  273 (446)
Q Consensus       204 ~~~~~~~~~~~~~~~l~~ll~~----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l------~~~~~~~v  273 (446)
                      +....... .+.++.+++.+.+    ++..++..++.++.++.. .+..+..+.+.++++.+..++      .+.....+
T Consensus       137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql  214 (312)
T PF03224_consen  137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL  214 (312)
T ss_dssp             TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred             CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence            65444322 3556666666654    455677889999999986 677888899999999999999      44447788


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-CcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhccc
Q 043676          274 KKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA-EFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLL  352 (446)
Q Consensus       274 ~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~  352 (446)
                      +.+++.+++-++. +++....+.+.++++.|.++++.. ..++.+-++.++.|+...........++..|+++.+..+..
T Consensus       215 ~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~  293 (312)
T PF03224_consen  215 QYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE  293 (312)
T ss_dssp             HHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred             HHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence            8999999999964 578888888888999999999865 67899999999999998866557788888777776666654


Q ss_pred             C--CCHHHHHH
Q 043676          353 C--SDPEIVTV  361 (446)
Q Consensus       353 ~--~~~~~~~~  361 (446)
                      .  .|+++.+.
T Consensus       294 rk~~Dedl~ed  304 (312)
T PF03224_consen  294 RKWSDEDLTED  304 (312)
T ss_dssp             S--SSHHHHHH
T ss_pred             CCCCCHHHHHH
Confidence            3  68887765

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.11  E-value=4.5e-09  Score=93.24  Aligned_cols=230  Identities=16%  Similarity=0.232  Sum_probs=166.4

Q ss_pred             HHHHHhhc--CCCHhHHHHHHHHHHHhccCCcHHHHHHHHh------CcHHHHHHhcCCCCccchhHHHHHHHHhhcCCc
Q 043676          175 PALAQLVH--SNDEDVLTYACWSLSYLADGTNDKIQAVIEA------GVCPRLVELLGHPSPSVLTPALRTVGNIVTGDD  246 (446)
Q Consensus       175 ~~l~~ll~--~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~------~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~  246 (446)
                      ..++.+++  +.++++..+++..+..+....+.....+...      .....+++++.++|..+...|+.+++.+....+
T Consensus        58 ~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~  137 (312)
T PF03224_consen   58 SLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGP  137 (312)
T ss_dssp             ----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCC
Confidence            33444444  4689999999999999998877666655542      357788889999999999999999999988766


Q ss_pred             hhhHHHHhcCChHHHHHHhcc----CchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH-----hc--CCcch
Q 043676          247 FQTQCIINHGAVPYLLDMLVH----NHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLL-----QN--AEFDT  315 (446)
Q Consensus       247 ~~~~~~~~~~~~~~l~~~l~~----~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll-----~~--~~~~v  315 (446)
                      ....... .+.++.++.++.+    + +..++..++.++.++.. .++.+..+.+.++++.+.+++     .+  .+..+
T Consensus       138 ~~~~~~~-~~~l~~ll~~L~~~l~~~-~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql  214 (312)
T PF03224_consen  138 KRSEKLV-KEALPKLLQWLSSQLSSS-DSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL  214 (312)
T ss_dssp             T--HHHH-HHHHHHHHHHHH-TT-HH-HH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred             ccccchH-HHHHHHHHHHHHHhhcCC-CcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence            5444322 3456777777654    3 56677889999999964 578888898999999999999     22  25688


Q ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccC-CCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHH
Q 043676          316 KKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC-SDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVE  394 (446)
Q Consensus       316 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~  394 (446)
                      +.+++.++.-++.  +++....+...+.++.|.++++. ..+++...++.++.|++....+.            +...+.
T Consensus       215 ~Y~~ll~lWlLSF--~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~------------~~~~mv  280 (312)
T PF03224_consen  215 QYQALLCLWLLSF--EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKS------------NIELMV  280 (312)
T ss_dssp             HHHHHHHHHHHTT--SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTT------------HHHHHH
T ss_pred             HHHHHHHHHHHhc--CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHH------------HHHHHH
Confidence            8999999999987  68888898888899999999965 56789999999999999876653            467888


Q ss_pred             HhChHHHHHHhhcCC--CHHHHHHHHHHH
Q 043676          395 EAGGLEKIENLQSHD--NNEIHEKSVKIF  421 (446)
Q Consensus       395 ~~~~~~~l~~l~~~~--~~~v~~~a~~~l  421 (446)
                      ..|+++.++.|....  ++++.+--..+-
T Consensus       281 ~~~~l~~l~~L~~rk~~Dedl~edl~~L~  309 (312)
T PF03224_consen  281 LCGLLKTLQNLSERKWSDEDLTEDLEFLK  309 (312)
T ss_dssp             HH-HHHHHHHHHSS--SSHHHHHHHHHHH
T ss_pred             HccHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            899999999998664  788776554443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.06  E-value=1.2e-07  Score=85.30  Aligned_cols=353  Identities=13%  Similarity=0.033  Sum_probs=217.7

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCC-ChhhHHHHH
Q 043676            7 LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASG-TSENTNVVI   85 (446)
Q Consensus         7 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~   85 (446)
                      ..+.|+|..|..-..|+..+..++.-+ -++. .  =.|++..+++....+.....+.+++.+++.++.. .|+......
T Consensus        99 al~aL~s~epr~~~~Aaql~aaIA~~E-lp~~-~--wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~s  174 (858)
T COG5215          99 ALRALKSPEPRFCTMAAQLLAAIARME-LPNS-L--WPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMS  174 (858)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHHHhh-Cccc-c--chHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHh
Confidence            356678888888888888888877654 1110 0  0144555566655555578999999999999972 232222211


Q ss_pred             hcCChHHHHH-hhCC-CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHh---ccccchhHHHHHHHHHHHhhc
Q 043676           86 DHGAVPIFVK-LLSS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAEL---NEHAKLSMLRNATRTLSNFCR  160 (446)
Q Consensus        86 ~~~~i~~L~~-~L~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l---~~~~~~~~~~~a~~~L~~l~~  160 (446)
                       +.++-.++. .++. ++..+|-.++.+|.+-+..   .+..+...+-...+++..   .+.++.+++..+..||..+..
T Consensus       175 -N~il~aiv~ga~k~et~~avRLaaL~aL~dsl~f---v~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~  250 (858)
T COG5215         175 -NVILFAIVMGALKNETTSAVRLAALKALMDSLMF---VQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMM  250 (858)
T ss_pred             -hHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH---HHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHH
Confidence             223333333 3443 6788999999999873311   222222222223333322   267789999999999988765


Q ss_pred             CC-CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHH-------------H---HHhCcHHHHHHhc
Q 043676          161 GK-PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQA-------------V---IEAGVCPRLVELL  223 (446)
Q Consensus       161 ~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~-------------~---~~~~~~~~l~~ll  223 (446)
                      -. ..-......-........+++.++++...+...-..++....+..-.             +   .-.+++|.|+++|
T Consensus       251 LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL  330 (858)
T COG5215         251 LYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLL  330 (858)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHH
Confidence            43 11111122333445556778889999999988887777432111100             0   0125788899998


Q ss_pred             CC-------CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 043676          224 GH-------PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVI  296 (446)
Q Consensus       224 ~~-------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~  296 (446)
                      ..       +++.+...|..||.-.+....+   .+++ .++..+-.-++++ +..-|+.|+.+++.+..+..+....-+
T Consensus       331 ~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd---~i~~-pVl~FvEqni~~~-~w~nreaavmAfGSvm~gp~~~~lT~~  405 (858)
T COG5215         331 EKQGEDYYGDDWNPSMAASSCLQLFAQLKGD---KIMR-PVLGFVEQNIRSE-SWANREAAVMAFGSVMHGPCEDCLTKI  405 (858)
T ss_pred             HhcCCCccccccchhhhHHHHHHHHHHHhhh---HhHH-HHHHHHHHhccCc-hhhhHHHHHHHhhhhhcCccHHHHHhh
Confidence            76       3566777788888776653332   2222 2455555667777 899999999999999876555444444


Q ss_pred             HcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhc-c--cCCCHHHHHHHHHHHHHHHHhh
Q 043676          297 DAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDL-L--LCSDPEIVTVCLIGLENILKVG  373 (446)
Q Consensus       297 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~l-l--~~~~~~~~~~~~~~l~~l~~~~  373 (446)
                      -...+|.+...+.+..-.++..++|+++.++.+-    ...+-..|-++..++- +  -.+.|.+..++.|...++.+.-
T Consensus       406 V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v----a~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~  481 (858)
T COG5215         406 VPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV----AMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHI  481 (858)
T ss_pred             HHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH----HHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhh
Confidence            4478999999998888899999999999997531    1111122223322221 1  1245677778888888887765


Q ss_pred             hhh
Q 043676          374 EAE  376 (446)
Q Consensus       374 ~~~  376 (446)
                      .+.
T Consensus       482 a~a  484 (858)
T COG5215         482 AKA  484 (858)
T ss_pred             hhh
Confidence            444

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.04  E-value=6.2e-08  Score=87.02  Aligned_cols=355  Identities=10%  Similarity=0.055  Sum_probs=222.2

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCCh-hhH
Q 043676            3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTS-ENT   81 (446)
Q Consensus         3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~-~~~   81 (446)
                      .+|+.+.+++..|..+++.|+..+.+++...+.+  ....-+.+...+.++..+++ ..++. ++..+-.+..+-. +..
T Consensus        85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~--v~~~Fn~iFdvL~klsaDsd-~~V~~-~aeLLdRLikdIVte~~  160 (675)
T KOG0212|consen   85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGE--VLVYFNEIFDVLCKLSADSD-QNVRG-GAELLDRLIKDIVTESA  160 (675)
T ss_pred             hhHHHHHhccCccceeeeHhHHHHHHHHHHhccC--cccchHHHHHHHHHHhcCCc-ccccc-HHHHHHHHHHHhccccc
Confidence            5788899999999999999999999988764222  22233456777888877777 55554 3333333332110 111


Q ss_pred             HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676           82 NVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG  161 (446)
Q Consensus        82 ~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  161 (446)
                      ..+-=.++++.|-.-+...++..|...+.-+..+-...+ ..-.-.-...++-+.++| .+.+.+++..+-.+++++...
T Consensus       161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~-~~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL~e  238 (675)
T KOG0212|consen  161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPD-LEMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFLAE  238 (675)
T ss_pred             cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCc-HHHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHH
Confidence            112112345555555555788888887777766653322 211111112456677778 677788887777777766554


Q ss_pred             C-CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCcc-chhHHHHHH-
Q 043676          162 K-PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPS-VLTPALRTV-  238 (446)
Q Consensus       162 ~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~-~~~~a~~~l-  238 (446)
                      - ...........++.++.-++++++.++..++.-+.....-.+... ...-.|++..++.++.+.++. ++..+...- 
T Consensus       239 I~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~  317 (675)
T KOG0212|consen  239 IRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDTEEMSIKEYAQMVNG  317 (675)
T ss_pred             HhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCCccccHHHHHHHHHH
Confidence            3 223333557788999999999999999999888888887665443 345568888898998887663 444443322 


Q ss_pred             --HHhhcCCchhhHHHHh-cCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcch
Q 043676          239 --GNIVTGDDFQTQCIIN-HGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDT  315 (446)
Q Consensus       239 --~~l~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v  315 (446)
                        ..+.... ...+. ++ ..+++.+...+.++ ..+.|.++..-+..+-...+.. -......+++.|..-+.+.+.++
T Consensus       318 ~l~~l~s~~-~~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~q-l~~h~~~if~tLL~tLsd~sd~v  393 (675)
T KOG0212|consen  318 LLLKLVSSE-RLKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQ-LLVHNDSIFLTLLKTLSDRSDEV  393 (675)
T ss_pred             HHHHHHhhh-hhccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcch-hhhhccHHHHHHHHhhcCchhHH
Confidence              2222211 11111 21 23567778888888 8889988886666664433332 22334578999999999999999


Q ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhh
Q 043676          316 KKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVG  373 (446)
Q Consensus       316 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~  373 (446)
                      ...++..+.+++...+..+...     ++..|.++...+..-+...+--++.+++-.-
T Consensus       394 vl~~L~lla~i~~s~~~~~~~~-----fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL  446 (675)
T KOG0212|consen  394 VLLALSLLASICSSSNSPNLRK-----FLLSLLEMFKEDTKLLEVRGNLIIRQLCLLL  446 (675)
T ss_pred             HHHHHHHHHHHhcCcccccHHH-----HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHh
Confidence            9999999999998644322222     3444556666555555556666666655443

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=99.03  E-value=2.4e-07  Score=88.29  Aligned_cols=314  Identities=17%  Similarity=0.217  Sum_probs=201.9

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH-HH
Q 043676            6 ALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN-VV   84 (446)
Q Consensus         6 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~   84 (446)
                      .|++.+.+.|.+.|+.|+.-|.+=+..+ .-..+.--...++..++++|.+.+ .++|..|++|++-+++.-++.+- .+
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le~~   86 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLETI   86 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHHHH
Confidence            6788899999999999998887655543 222222233467889999999999 89999999999955542211110 00


Q ss_pred             H------------------------------------------------------h------------------------
Q 043676           85 I------------------------------------------------------D------------------------   86 (446)
Q Consensus        85 ~------------------------------------------------------~------------------------   86 (446)
                      +                                                      .                        
T Consensus        87 ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~  166 (1233)
T KOG1824|consen   87 VENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGT  166 (1233)
T ss_pred             HHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcc
Confidence            0                                                      0                        


Q ss_pred             ------cCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676           87 ------HGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR  160 (446)
Q Consensus        87 ------~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  160 (446)
                            .+++..++.-+.++...+|..++.+|+.++...+.  +.  -.+.+..+++-|.........+....+|..+++
T Consensus       167 ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~--~l--y~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r  242 (1233)
T KOG1824|consen  167 LLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNR--DL--YVELIEHLLKGLSNRTQMSATRTYIQCLAAICR  242 (1233)
T ss_pred             cCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCH--HH--HHHHHHHHHhccCCCCchHHHHHHHHHHHHHHH
Confidence                  00011111122234456788888888888854432  11  123566777777666677778888899999988


Q ss_pred             CCCCCChhhhhhhHHHHHHhh---cCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC-----------
Q 043676          161 GKPEPPFDQVRPALPALAQLV---HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHP-----------  226 (446)
Q Consensus       161 ~~~~~~~~~~~~~~~~l~~ll---~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-----------  226 (446)
                      ....+--......+|.+.++.   +.+++++++.++.++..+....+..+..+.. .++..+++.+.++           
T Consensus       243 ~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~p-ei~~l~l~yisYDPNy~yd~~eDe  321 (1233)
T KOG1824|consen  243 QAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVP-EIINLCLSYISYDPNYNYDTEEDE  321 (1233)
T ss_pred             HhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccch-HHHHHHHHHhccCCCCCCCCccch
Confidence            876665666778899999998   6778999999999999988877765543332 4555555555421           


Q ss_pred             -----------------------CccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHH
Q 043676          227 -----------------------SPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISN  283 (446)
Q Consensus       227 -----------------------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~  283 (446)
                                             +|.||++|+.++..+.....+....+.. .+-|.++.-++.. ++.|+.....+...
T Consensus       322 d~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q-~l~p~lI~RfkER-EEnVk~dvf~~yi~  399 (1233)
T KOG1824|consen  322 DAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQ-TLGPALISRFKER-EENVKADVFHAYIA  399 (1233)
T ss_pred             hhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHH-HhCHHHHHHHHHH-hhhHHHHHHHHHHH
Confidence                                   1368999999999998766555444443 3557788888777 77788776666655


Q ss_pred             HhcCC---------HHHH---------HHHHH--cCChHHHHHHHhcCCcchHHHHHHHHHHhcc
Q 043676          284 ITAGN---------REQI---------QAVID--AGLIRPIVNLLQNAEFDTKKEAAWAISNATS  328 (446)
Q Consensus       284 l~~~~---------~~~~---------~~~~~--~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  328 (446)
                      +....         ++..         ..+.+  .-++..+-+.+++++...+..+...|..+..
T Consensus       400 ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~  464 (1233)
T KOG1824|consen  400 LLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELIN  464 (1233)
T ss_pred             HHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHH
Confidence            54321         1111         11111  1134445555565566666667666666644

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.03  E-value=3.8e-07  Score=85.52  Aligned_cols=287  Identities=15%  Similarity=0.162  Sum_probs=203.1

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV   83 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   83 (446)
                      .|.+.+.+++.++.++..|+.+..++.... ++...     .+++..-++|.+.+ ..+-..++..+..++..+++....
T Consensus       144 apeVe~Ll~~~~~~irKKA~Lca~r~irK~-P~l~e-----~f~~~~~~lL~ek~-hGVL~~~l~l~~e~c~~~~~~l~~  216 (866)
T KOG1062|consen  144 APEVERLLQHRDPYIRKKAALCAVRFIRKV-PDLVE-----HFVIAFRKLLCEKH-HGVLIAGLHLITELCKISPDALSY  216 (866)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-chHHH-----HhhHHHHHHHhhcC-CceeeeHHHHHHHHHhcCHHHHHH
Confidence            466778899999999999999999988864 22222     35667778888888 788889999999999887877777


Q ss_pred             HHhcCChHHHHHhhCC---------------CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcccc-----
Q 043676           84 VIDHGAVPIFVKLLSS---------------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHA-----  143 (446)
Q Consensus        84 ~~~~~~i~~L~~~L~~---------------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-----  143 (446)
                      +.+  .++.|+..|++               ++|-++...++.|.-+-.+.+...+.+.+     .|-+...+..     
T Consensus       217 fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D-----iLaqvatntdsskN~  289 (866)
T KOG1062|consen  217 FRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND-----ILAQVATNTDSSKNA  289 (866)
T ss_pred             HHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhcccccccc
Confidence            765  55666665542               46889999999999999888776665543     3333332211     


Q ss_pred             chhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc
Q 043676          144 KLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELL  223 (446)
Q Consensus       144 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll  223 (446)
                      ...+...+..++..+-.+.+     ...-++..|-++|.+.|..+++-++..|......++...+...     ..++.+|
T Consensus       290 GnAILYE~V~TI~~I~~~~~-----LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr-----~tIleCL  359 (866)
T KOG1062|consen  290 GNAILYECVRTIMDIRSNSG-----LRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHR-----STILECL  359 (866)
T ss_pred             hhHHHHHHHHHHHhccCCch-----HHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHH-----HHHHHHh
Confidence            23466666666665544432     2234567888899999999999999999999988886665333     5689999


Q ss_pred             CCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCChH
Q 043676          224 GHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG-NREQIQAVIDAGLIR  302 (446)
Q Consensus       224 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~  302 (446)
                      +++|..++..|+.....|...+  +...     .+..++..|... ++++|...+..+..++.. .|+.+-      .+.
T Consensus       360 ~DpD~SIkrralELs~~lvn~~--Nv~~-----mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W------~id  425 (866)
T KOG1062|consen  360 KDPDVSIKRRALELSYALVNES--NVRV-----MVKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRW------HID  425 (866)
T ss_pred             cCCcHHHHHHHHHHHHHHhccc--cHHH-----HHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchh------HHH
Confidence            9999999999999998888643  3332     467799999888 999999999888888762 333222      244


Q ss_pred             HHHHHHhcCCcchHHHHHHHHHHhcc
Q 043676          303 PIVNLLQNAEFDTKKEAAWAISNATS  328 (446)
Q Consensus       303 ~L~~ll~~~~~~v~~~a~~aL~~l~~  328 (446)
                      .+.+.+...-.-|+..+...+..+..
T Consensus       426 tml~Vl~~aG~~V~~dv~~nll~LIa  451 (866)
T KOG1062|consen  426 TMLKVLKTAGDFVNDDVVNNLLRLIA  451 (866)
T ss_pred             HHHHHHHhcccccchhhHHHHHHHHh
Confidence            55555555444444444444444433

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=2.2e-06  Score=72.28  Aligned_cols=363  Identities=14%  Similarity=0.138  Sum_probs=237.7

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCC-C--cHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhH
Q 043676            5 PALVAGVWSDDNSLQLEATTLSRKLLSFDRN-P--PIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENT   81 (446)
Q Consensus         5 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~-~--~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~   81 (446)
                      |.|-..|..++..++..++..+..+...... .  ....+++.++++.++..+..++ .++...|...+..++. .+...
T Consensus        85 pdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrial-fpaal  162 (524)
T KOG4413|consen   85 PDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIAL-FPAAL  162 (524)
T ss_pred             HHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh-cHHHH
Confidence            4455567788999999999999888775421 1  1344568899999999999998 8999999999999998 77777


Q ss_pred             HHHHhcCChHHHH--HhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 043676           82 NVVIDHGAVPIFV--KLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFC  159 (446)
Q Consensus        82 ~~~~~~~~i~~L~--~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  159 (446)
                      ..+.+.+..+.+-  .+-...+.-.|......+..+.+-+++....+...|.+..+..-+....|.-++.+++.....++
T Consensus       163 eaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLa  242 (524)
T KOG4413|consen  163 EAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELA  242 (524)
T ss_pred             HHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHH
Confidence            7777776665443  23334567778888999999998889888888899999999888855578888899999999999


Q ss_pred             cCCCCCChhhhhhhHHHHHHhhcCC--CHhHHHHHHHHHHHhccCCcH---HHHHHHHh--CcHHHHHHhcCCCCccchh
Q 043676          160 RGKPEPPFDQVRPALPALAQLVHSN--DEDVLTYACWSLSYLADGTND---KIQAVIEA--GVCPRLVELLGHPSPSVLT  232 (446)
Q Consensus       160 ~~~~~~~~~~~~~~~~~l~~ll~~~--~~~v~~~~~~~l~~l~~~~~~---~~~~~~~~--~~~~~l~~ll~~~~~~~~~  232 (446)
                      .....+.+....+.++.+..++...  +|--.-.++...+.+.....-   .-+.+.+.  -+++.....+..+++....
T Consensus       243 eteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaie  322 (524)
T KOG4413|consen  243 ETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIE  322 (524)
T ss_pred             HHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHH
Confidence            8877777888889999999988743  333333344444443322110   00011111  2344455666778999999


Q ss_pred             HHHHHHHHhhcCCchhhHHHHhcCC--hHHHHHHhccCchHHHHHHHHHHHHHHhc---CCHHHH---------HH-HHH
Q 043676          233 PALRTVGNIVTGDDFQTQCIINHGA--VPYLLDMLVHNHEEIIKKEISWIISNITA---GNREQI---------QA-VID  297 (446)
Q Consensus       233 ~a~~~l~~l~~~~~~~~~~~~~~~~--~~~l~~~l~~~~~~~v~~~a~~~l~~l~~---~~~~~~---------~~-~~~  297 (446)
                      .|..+++.+.+.. +..+.+.+.|-  ...++.-.-+.....-+..+..+|.+++.   -.++++         .. +.+
T Consensus       323 aAiDalGilGSnt-eGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifd  401 (524)
T KOG4413|consen  323 AAIDALGILGSNT-EGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFD  401 (524)
T ss_pred             HHHHHHHhccCCc-chhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHH
Confidence            9999999998744 34444554443  33333333232133445667777777764   122211         11 111


Q ss_pred             -------cCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCC---CHHHHHHHHHHHH
Q 043676          298 -------AGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCS---DPEIVTVCLIGLE  367 (446)
Q Consensus       298 -------~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~---~~~~~~~~~~~l~  367 (446)
                             ..-+..+...++...++++..++..+..++.. .......+...++++...+--...   ..+-+..+++++.
T Consensus       402 aaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaq-PWalkeifakeefieiVtDastEhaKaakdAkYeccKAia  480 (524)
T KOG4413|consen  402 AAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ-PWALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAIA  480 (524)
T ss_pred             HHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC-cHHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHHH
Confidence                   12355566677777899999999999999864 223333444555555554433221   1234455555555


Q ss_pred             HHHH
Q 043676          368 NILK  371 (446)
Q Consensus       368 ~l~~  371 (446)
                      +-+-
T Consensus       481 eafl  484 (524)
T KOG4413|consen  481 EAFL  484 (524)
T ss_pred             HHHH
Confidence            5443

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.03  E-value=1.4e-08  Score=91.02  Aligned_cols=319  Identities=17%  Similarity=0.130  Sum_probs=207.2

Q ss_pred             HhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChH
Q 043676           42 IQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPR  121 (446)
Q Consensus        42 ~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~  121 (446)
                      .-.+++++.+..+.+++ ..++..|+..+.|++. -...........+...+.++..+.+..++..| ..+-.+..+-..
T Consensus        81 Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaK-v~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVt  157 (675)
T KOG0212|consen   81 YLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAK-VAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVT  157 (675)
T ss_pred             HHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHH-HhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhcc
Confidence            33467889999999999 8999999999999987 22222222233456778888877777776443 333333311110


Q ss_pred             HHHHHHHcCChHHHHHHhc---cccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHH
Q 043676          122 CRDLVLSQGALIPLLAELN---EHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSY  198 (446)
Q Consensus       122 ~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~  198 (446)
                      -+..   .--++.++.++.   ...++..+...+.-+..+-..++..-.-....+++.|..+|.+++++++..+=.++.+
T Consensus       158 e~~~---tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~  234 (675)
T KOG0212|consen  158 ESAS---TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSE  234 (675)
T ss_pred             cccc---ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            0000   112444444442   4457788888887777776655444444568899999999999999999777666655


Q ss_pred             hcc---CCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchH-HHH
Q 043676          199 LAD---GTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEE-IIK  274 (446)
Q Consensus       199 l~~---~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~v~  274 (446)
                      +..   +++..   +--...++.++.-+.++++.++..|+..+..+..-.+... ...-+|++..++..+.+. +. .++
T Consensus       235 fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~-e~~~i~  309 (675)
T KOG0212|consen  235 FLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDT-EEMSIK  309 (675)
T ss_pred             HHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCC-ccccHH
Confidence            442   22211   1122677888888999999999999888888876554433 233567778888888776 44 344


Q ss_pred             HHHHHH---HHHHhcCCHHHHHHHHH-cCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhc
Q 043676          275 KEISWI---ISNITAGNREQIQAVID-AGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDL  350 (446)
Q Consensus       275 ~~a~~~---l~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~l  350 (446)
                      ..+...   +..++. .+..... ++ ..+++.+.+.+.+...+.|..++.-+..+..... .+.-. ......+.|..-
T Consensus       310 ~~a~~~n~~l~~l~s-~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p-~ql~~-h~~~if~tLL~t  385 (675)
T KOG0212|consen  310 EYAQMVNGLLLKLVS-SERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAP-GQLLV-HNDSIFLTLLKT  385 (675)
T ss_pred             HHHHHHHHHHHHHHh-hhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCc-chhhh-hccHHHHHHHHh
Confidence            443322   222222 1221112 22 2367888888888888999999988888866533 22222 234578889999


Q ss_pred             ccCCCHHHHHHHHHHHHHHHHhhhh
Q 043676          351 LLCSDPEIVTVCLIGLENILKVGEA  375 (446)
Q Consensus       351 l~~~~~~~~~~~~~~l~~l~~~~~~  375 (446)
                      |++++.++...++..+..++.....
T Consensus       386 Lsd~sd~vvl~~L~lla~i~~s~~~  410 (675)
T KOG0212|consen  386 LSDRSDEVVLLALSLLASICSSSNS  410 (675)
T ss_pred             hcCchhHHHHHHHHHHHHHhcCccc
Confidence            9999999999999999998876554

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=99.01  E-value=1.1e-06  Score=80.46  Aligned_cols=347  Identities=14%  Similarity=0.103  Sum_probs=224.9

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHH
Q 043676           45 GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD  124 (446)
Q Consensus        45 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~  124 (446)
                      .++..+.+-+..+. +.+|.....||..+.........    ..+.+.+.+++....-.-+..+.+.++.+..+...  .
T Consensus        96 ~~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~~~----~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~  168 (569)
T KOG1242|consen   96 SIIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGLSG----EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--E  168 (569)
T ss_pred             HHHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhccCH----HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--h
Confidence            35677778888888 89999988888777652111111    12456777888888888888899999888866543  3


Q ss_pred             HHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCc
Q 043676          125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTN  204 (446)
Q Consensus       125 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~  204 (446)
                      ...+.+.+..+...+....+..-++.+..+....+..-........-..+|.+...+.+....+|..+..+...+...-+
T Consensus       169 ~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~  248 (569)
T KOG1242|consen  169 SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLS  248 (569)
T ss_pred             hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcC
Confidence            45566778888887733333333333444444433332222222334566666677777789999998888877664433


Q ss_pred             HHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHH
Q 043676          205 DKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNI  284 (446)
Q Consensus       205 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l  284 (446)
                      ...   ++ .+++.++.-+....++.+..++..++.++...+.+.. ..-..++|.+.+.|.+. .+++|+.+..++.++
T Consensus       249 ~~a---VK-~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~  322 (569)
T KOG1242|consen  249 AYA---VK-LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDT-KPEVRKAGIETLLKF  322 (569)
T ss_pred             cch---hh-HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence            211   11 2334444444444888999999999999987776554 44567999999999999 999999999999999


Q ss_pred             hc--CCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhc--cCCCHHHHHHHHHcCChHHHHhcccCCCHHHHH
Q 043676          285 TA--GNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNAT--SGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVT  360 (446)
Q Consensus       285 ~~--~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~--~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~  360 (446)
                      +.  .+++ ++     .++|.|++.+.+....+ ..+...|+.-.  ..-++.....     .+|.|.+-+...+..+..
T Consensus       323 ~svidN~d-I~-----~~ip~Lld~l~dp~~~~-~e~~~~L~~ttFV~~V~~psLal-----mvpiL~R~l~eRst~~kr  390 (569)
T KOG1242|consen  323 GSVIDNPD-IQ-----KIIPTLLDALADPSCYT-PECLDSLGATTFVAEVDAPSLAL-----MVPILKRGLAERSTSIKR  390 (569)
T ss_pred             HHhhccHH-HH-----HHHHHHHHHhcCcccch-HHHHHhhcceeeeeeecchhHHH-----HHHHHHHHHhhccchhhh
Confidence            76  3443 22     36788888887665333 23444443221  1111111111     366677777788888889


Q ss_pred             HHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 043676          361 VCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGR  428 (446)
Q Consensus       361 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~  428 (446)
                      .+..++.|++..-++.+.          ....+.+  .++.++.......|+++..+.+.+....+..
T Consensus       391 ~t~~IidNm~~LveDp~~----------lapfl~~--Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~  446 (569)
T KOG1242|consen  391 KTAIIIDNMCKLVEDPKD----------LAPFLPS--LLPGLKENLDDAVPEVRAVAARALGALLERL  446 (569)
T ss_pred             hHHHHHHHHHHhhcCHHH----------HhhhHHH--HhhHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence            999999999887644331          2233321  2566777777789999999999986665433

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=1.5e-06  Score=79.79  Aligned_cols=346  Identities=16%  Similarity=0.147  Sum_probs=223.6

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV   83 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   83 (446)
                      +..+++-+..+.+++|.....++..+.........     ..+.+.+.+++.... ..-+..+++.+..+..+  .....
T Consensus        98 ~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~-----~~~l~~l~~ll~~~~-~~~~~~aa~~~ag~v~g--~~i~~  169 (569)
T KOG1242|consen   98 IEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSG-----EYVLELLLELLTSTK-IAERAGAAYGLAGLVNG--LGIES  169 (569)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCH-----HHHHHHHHHHhcccc-HHHHhhhhHHHHHHHcC--cHHhh
Confidence            45666677778889999888888876543211111     235677888888777 68888899998888863  33445


Q ss_pred             HHhcCChHHHHHhhCCCCHHHHH-HHHHHHHHhhCC-ChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676           84 VIDHGAVPIFVKLLSSPSDDVRE-QAVWALGNVAGD-SPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG  161 (446)
Q Consensus        84 ~~~~~~i~~L~~~L~~~~~~v~~-~a~~~l~~l~~~-~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  161 (446)
                      +.+.+++..+.+...+.....++ .++.+....+.. .+.....+..  .++.++... .+..+.++..+..+...+...
T Consensus       170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~--~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~~  246 (569)
T KOG1242|consen  170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVP--ILPSILTNF-GDKINKVREAAVEAAKAIMRC  246 (569)
T ss_pred             hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHh--hHHHHHHHh-hccchhhhHHHHHHHHHHHHh
Confidence            56678899999999885544433 333333222211 1111011111  234444444 455678888888777766554


Q ss_pred             CCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHh
Q 043676          162 KPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI  241 (446)
Q Consensus       162 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l  241 (446)
                      -+.   .....++|.++.-+....+.....++..++.++...+.... ..-..++|.+...|-+..+.++..+..++.++
T Consensus       247 ~~~---~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~  322 (569)
T KOG1242|consen  247 LSA---YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDTKPEVRKAGIETLLKF  322 (569)
T ss_pred             cCc---chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            321   12234455555555555788889999999999988776654 55669999999999999999999999999999


Q ss_pred             hcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCCcchHHH
Q 043676          242 VTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA---GNREQIQAVIDAGLIRPIVNLLQNAEFDTKKE  318 (446)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~  318 (446)
                      +..-+.. .  + ..+++.+++.+.++ ...+ .++...|+.-..   -.+....     -++|.|.+-+...+..+++.
T Consensus       323 ~svidN~-d--I-~~~ip~Lld~l~dp-~~~~-~e~~~~L~~ttFV~~V~~psLa-----lmvpiL~R~l~eRst~~kr~  391 (569)
T KOG1242|consen  323 GSVIDNP-D--I-QKIIPTLLDALADP-SCYT-PECLDSLGATTFVAEVDAPSLA-----LMVPILKRGLAERSTSIKRK  391 (569)
T ss_pred             HHhhccH-H--H-HHHHHHHHHHhcCc-ccch-HHHHHhhcceeeeeeecchhHH-----HHHHHHHHHHhhccchhhhh
Confidence            7633211 1  1 12678899999887 4222 233333332211   0111111     14566666666778899999


Q ss_pred             HHHHHHHhccCC-CHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhh
Q 043676          319 AAWAISNATSGG-TQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAE  376 (446)
Q Consensus       319 a~~aL~~l~~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~  376 (446)
                      ++..+.|++.-- ++.....++. ..+|.+-..+.+..|++|..+..+|..+.+.....
T Consensus       392 t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~  449 (569)
T KOG1242|consen  392 TAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALGALLERLGEV  449 (569)
T ss_pred             HHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhh
Confidence            999999998754 3444333332 26778888888889999999999998887765544

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.99  E-value=8.1e-07  Score=82.33  Aligned_cols=257  Identities=14%  Similarity=0.172  Sum_probs=189.0

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHH
Q 043676           45 GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD  124 (446)
Q Consensus        45 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~  124 (446)
                      ++-+-++.+|.+.. +-+|..|+..+..+....|+...     ..++.|..-|.++++.|+..|+.+++.|+..+|..--
T Consensus       144 DLa~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL  217 (877)
T KOG1059|consen  144 DLADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL  217 (877)
T ss_pred             HHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc
Confidence            45567788999998 89999999999999886665443     3479999999999999999999999999988875421


Q ss_pred             HHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCC-HhHHHHHHHHHHH--hcc
Q 043676          125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSND-EDVLTYACWSLSY--LAD  201 (446)
Q Consensus       125 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~v~~~~~~~l~~--l~~  201 (446)
                           ..-|.+.++|..+.+.-+....+..++.|+--.|.    .-...++.+..++++.. ..+...++.++..  ++.
T Consensus       218 -----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPR----LgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~  288 (877)
T KOG1059|consen  218 -----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR----LGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSS  288 (877)
T ss_pred             -----cccHHHHHHHhccCCCeehHHHHHHHhhccccCch----hhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence                 14577888887777888888888888888766543    23467888888888764 5666666666643  333


Q ss_pred             CCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHH
Q 043676          202 GTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWII  281 (446)
Q Consensus       202 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l  281 (446)
                      +.++....+ + -.++.|-.++.+.|+.++.-++.+++.+...++.....     .-+.++.+|.+. +..+|..|+..+
T Consensus       289 g~~d~~asi-q-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~Dk-D~SIRlrALdLl  360 (877)
T KOG1059|consen  289 GMSDHSASI-Q-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDK-DESIRLRALDLL  360 (877)
T ss_pred             CCCCcHHHH-H-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccC-CchhHHHHHHHH
Confidence            322222111 1 34677888888999999999999999999877765543     346789999999 999999999998


Q ss_pred             HHHhcCCHHHHHHHHHcCChHHHHHHHhcCC-cchHHHHHHHHHHhccCCC
Q 043676          282 SNITAGNREQIQAVIDAGLIRPIVNLLQNAE-FDTKKEAAWAISNATSGGT  331 (446)
Q Consensus       282 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~~~~  331 (446)
                      .-+..  .++...     ++..|+..+...+ ...|...+.-+-.++..++
T Consensus       361 ~gmVs--kkNl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~sn  404 (877)
T KOG1059|consen  361 YGMVS--KKNLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQSN  404 (877)
T ss_pred             HHHhh--hhhHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhhhh
Confidence            88754  333332     5666776665444 3777777777777766433

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.98  E-value=1.5e-07  Score=87.25  Aligned_cols=329  Identities=12%  Similarity=0.117  Sum_probs=211.5

Q ss_pred             HHHHHhhcCCCChHHHHHHHHHHHHHcCC--ChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHH
Q 043676           48 PRFVEFLMREDYPQLQYEAAWVLINIASG--TSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDL  125 (446)
Q Consensus        48 ~~L~~ll~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~  125 (446)
                      ...+..|++.. +.+|.+|+..++.++.-  ....-..+...|  -.|...|....+++.-..+.++..++....-.+..
T Consensus       802 stiL~rLnnks-a~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLgsILgAikaI~nvigm~km~  878 (1172)
T KOG0213|consen  802 STILWRLNNKS-AKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMT  878 (1172)
T ss_pred             HHHHHHhcCCC-hhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhccccccC
Confidence            33455677788 89999999998888751  111112222233  35677888889999887777777766322100001


Q ss_pred             HHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhh-hhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCc
Q 043676          126 VLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQ-VRPALPALAQLVHSNDEDVLTYACWSLSYLADGTN  204 (446)
Q Consensus       126 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~  204 (446)
                      ---.+.+|.|.-+| ++....++.+++..+..++...+...... -..+--.|+.+|..-+.++|+.+..+++.++..-.
T Consensus       879 pPi~dllPrltPIL-knrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIG  957 (1172)
T KOG0213|consen  879 PPIKDLLPRLTPIL-KNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIG  957 (1172)
T ss_pred             CChhhhcccchHhh-hhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcC
Confidence            11235688888888 78889999999999999999875422211 12333456777888899999999999999886432


Q ss_pred             HHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHH
Q 043676          205 DKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNI  284 (446)
Q Consensus       205 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l  284 (446)
                      .       .+++..|+.-|+..+...|....-+++-.+..+...       .++|.|+.=-..+ +..|+...+.+++.+
T Consensus       958 P-------qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF-------tVLPalmneYrtP-e~nVQnGVLkalsf~ 1022 (1172)
T KOG0213|consen  958 P-------QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF-------TVLPALMNEYRTP-EANVQNGVLKALSFM 1022 (1172)
T ss_pred             H-------HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch-------hhhHHHHhhccCc-hhHHHHhHHHHHHHH
Confidence            2       144555666665555555555555555555443321       3677777777778 888999888888887


Q ss_pred             hcC-CHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcc-------cCCCH
Q 043676          285 TAG-NREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLL-------LCSDP  356 (446)
Q Consensus       285 ~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll-------~~~~~  356 (446)
                      ... .+-...++..  +.|.|.+.+.+.|.--|+.|..++.+++.+..        -.|+.+.++.+|       -+.+|
T Consensus      1023 FeyigemskdYiya--v~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~--------g~g~eda~iHLLN~iWpNIle~sP 1092 (1172)
T KOG0213|consen 1023 FEYIGEMSKDYIYA--VTPLLEDALMDRDLVHRQTAMNVIKHLALGVP--------GTGCEDALIHLLNLIWPNILETSP 1092 (1172)
T ss_pred             HHHHHHHhhhHHHH--hhHHHHHhhccccHHHHHHHHHHHHHHhcCCC--------CcCcHHHHHHHHHHhhhhhcCCCh
Confidence            542 2222333333  77888888888899999999999999987521        112333333333       35778


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 043676          357 EIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYW  425 (446)
Q Consensus       357 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  425 (446)
                      .+.....+++..+-.                    .+...-.+....+-+-|+...|++..-.+.+.++
T Consensus      1093 hviqa~~e~~eg~r~--------------------~Lg~~~~~~Y~~QGLFHParkVR~~yw~vyn~my 1141 (1172)
T KOG0213|consen 1093 HVIQAFDEAMEGLRV--------------------ALGPQAMLKYCLQGLFHPARKVRKRYWTVYNSMY 1141 (1172)
T ss_pred             HHHHHHHHHHHHHHH--------------------HhchHHHHHHHHHhccCcHHHHHHHHHHHHHhHh
Confidence            888877777766432                    2222223444555567888888777666666554

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.98  E-value=1.4e-07  Score=85.03  Aligned_cols=309  Identities=15%  Similarity=0.087  Sum_probs=197.9

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHH
Q 043676           14 DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIF   93 (446)
Q Consensus        14 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L   93 (446)
                      .+..+|..++.+|.+-+..-+.....+--.+-++...++.-+.++ .+++..|..||.++..-.........+.-.....
T Consensus       190 t~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d-~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt  268 (858)
T COG5215         190 TTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGND-EELQHAAFGCLNKIMMLYYKFMQSYMENALAALT  268 (858)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357788888888887322211111122222345566677778888 8999999999999987555555566666666777


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHH----------------HHcCChHHHHHHhcc-cc-----chhHHHHH
Q 043676           94 VKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV----------------LSQGALIPLLAELNE-HA-----KLSMLRNA  151 (446)
Q Consensus        94 ~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~----------------~~~~~i~~l~~~l~~-~~-----~~~~~~~a  151 (446)
                      .+.+++++.++...++...+.+|...-+..-..                .-.+++|.++++|.+ ++     +..+-..|
T Consensus       269 ~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA  348 (858)
T COG5215         269 GRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAA  348 (858)
T ss_pred             HHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhH
Confidence            788999999999999999999985332111111                122368889999854 22     23444455


Q ss_pred             HHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccch
Q 043676          152 TRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVL  231 (446)
Q Consensus       152 ~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~  231 (446)
                      ..||--++.....   ......+..+-+-+++++..-++.+..+++.+...+......-+-...+|.+...+.++.--++
T Consensus       349 ~sCLqlfaq~~gd---~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk  425 (858)
T COG5215         349 SSCLQLFAQLKGD---KIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVK  425 (858)
T ss_pred             HHHHHHHHHHhhh---HhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehh
Confidence            5555555443211   1223355555666788899999999999999998877665555555888888888888888899


Q ss_pred             hHHHHHHHHhhcCCchhhHHHHhcCChHHHHHH----hccCchHHHHHHHHHHHHHHhcCCHHHH---HHHHH---cCCh
Q 043676          232 TPALRTVGNIVTGDDFQTQCIINHGAVPYLLDM----LVHNHEEIIKKEISWIISNITAGNREQI---QAVID---AGLI  301 (446)
Q Consensus       232 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~~~v~~~a~~~l~~l~~~~~~~~---~~~~~---~~~i  301 (446)
                      ..++||++.++.+-+...   -..+.++..++.    +. . .+.+...+.|...|++.+-++..   ..++.   ..++
T Consensus       426 ~ttAwc~g~iad~va~~i---~p~~Hl~~~vsa~liGl~-D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~  500 (858)
T COG5215         426 STTAWCFGAIADHVAMII---SPCGHLVLEVSASLIGLM-D-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAIL  500 (858)
T ss_pred             hHHHHHHHHHHHHHHHhc---CccccccHHHHHHHhhhh-c-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHH
Confidence            999999999997544322   122333322221    22 2 34677889999999986433322   11111   1234


Q ss_pred             HHHHHHHh--cCCcchHHHHHHHHHHhccCCC
Q 043676          302 RPIVNLLQ--NAEFDTKKEAAWAISNATSGGT  331 (446)
Q Consensus       302 ~~L~~ll~--~~~~~v~~~a~~aL~~l~~~~~  331 (446)
                      ..|+...+  ..+...|..+..+|+.+...+.
T Consensus       501 ~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~  532 (858)
T COG5215         501 NALVKGTELALNESNLRVSLFSALGTLILICP  532 (858)
T ss_pred             HHHHHHHHhhccchhHHHHHHHHHHHHHhhcc
Confidence            44443332  2356788888899998877644

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.97  E-value=6.6e-08  Score=90.40  Aligned_cols=343  Identities=16%  Similarity=0.133  Sum_probs=219.3

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhH
Q 043676            2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENT   81 (446)
Q Consensus         2 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~   81 (446)
                      +.++.+++...++++.+|..|++.+..+   . -+   .+.+ .+...+.+.+++.+ +-+|..++-+..++-..   ..
T Consensus        86 ~avnt~~kD~~d~np~iR~lAlrtm~~l---~-v~---~i~e-y~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~---~~  153 (734)
T KOG1061|consen   86 LAVNTFLKDCEDPNPLIRALALRTMGCL---R-VD---KITE-YLCDPLLKCLKDDD-PYVRKTAAVCVAKLFDI---DP  153 (734)
T ss_pred             hhhhhhhccCCCCCHHHHHHHhhceeeE---e-eh---HHHH-HHHHHHHHhccCCC-hhHHHHHHHHHHHhhcC---Ch
Confidence            4566677777788888888777665532   1 11   1222 35778888999999 89999999999998763   34


Q ss_pred             HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676           82 NVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG  161 (446)
Q Consensus        82 ~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  161 (446)
                      +.....|.++.|..++.+.++.+..+|+.++..+....+..-..    .....++..+....+.-....-+..|-.++..
T Consensus       154 ~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~----~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y  229 (734)
T KOG1061|consen  154 DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLL----ELNPQLINKLLEALNECTEWGQIFILDCLAEY  229 (734)
T ss_pred             hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcc----cccHHHHHHHHHHHHHhhhhhHHHHHHHHHhc
Confidence            55677899999999999999999999999999998655421001    12223332221222333334445555666666


Q ss_pred             CCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHh
Q 043676          162 KPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI  241 (446)
Q Consensus       162 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l  241 (446)
                      .+... .....++..+...+.+.++.+.-.+...+.++...-..... .+-...-+.++.++.... .+...|+.-+.-+
T Consensus       230 ~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~-~~~~K~~~pl~tlls~~~-e~qyvaLrNi~li  306 (734)
T KOG1061|consen  230 VPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNE-LLFKKVAPPLVTLLSSES-EIQYVALRNINLI  306 (734)
T ss_pred             CCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHH-HHHHHhcccceeeecccc-hhhHHHHhhHHHH
Confidence            54444 44456777788888888888887888777777655443222 222256666777776655 5555555555544


Q ss_pred             hcCCchhhHHH-------------------------H-hcC---ChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHH
Q 043676          242 VTGDDFQTQCI-------------------------I-NHG---AVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQI  292 (446)
Q Consensus       242 ~~~~~~~~~~~-------------------------~-~~~---~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~  292 (446)
                      ....+.....-                         . +++   ++..+...-..- +.+...++++++++++..-++. 
T Consensus       307 l~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatev-D~~fvrkaIraig~~aik~e~~-  384 (734)
T KOG1061|consen  307 LQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEV-DVDFVRKAVRAIGRLAIKAEQS-  384 (734)
T ss_pred             HHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhh-CHHHHHHHHHHhhhhhhhhhhh-
Confidence            44333211100                         0 111   112222222233 5677788999999997642221 


Q ss_pred             HHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccC-CCHHHHHHHHHHHHHHHH
Q 043676          293 QAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC-SDPEIVTVCLIGLENILK  371 (446)
Q Consensus       293 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~~~~~~l~~l~~  371 (446)
                           ++++..|+++++.+-..+..++...+..+..... .....     +++.+...+++ ++|+.+...+|++.....
T Consensus       385 -----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP-~~~~~-----vv~~l~~~~~sl~epeak~amiWilg~y~~  453 (734)
T KOG1061|consen  385 -----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYP-NKYES-----VVAILCENLDSLQEPEAKAALIWILGEYAE  453 (734)
T ss_pred             -----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCC-Cchhh-----hhhhhcccccccCChHHHHHHHHHHhhhhh
Confidence                 5799999999998877888888889999887642 22222     45666666654 678899999999988766


Q ss_pred             hhhhh
Q 043676          372 VGEAE  376 (446)
Q Consensus       372 ~~~~~  376 (446)
                      .-++.
T Consensus       454 ~i~~a  458 (734)
T KOG1061|consen  454 RIENA  458 (734)
T ss_pred             ccCcH
Confidence            54443

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.95  E-value=5.2e-07  Score=82.15  Aligned_cols=332  Identities=12%  Similarity=0.111  Sum_probs=214.8

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHcCC--ChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHH
Q 043676           46 VVPRFVEFLMREDYPQLQYEAAWVLINIASG--TSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCR  123 (446)
Q Consensus        46 ~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~  123 (446)
                      ++...+.+|++.. +.++.+|+...+.++.-  ....-..+...|  ..|.+-|....+++.-..+.+++.+.....--.
T Consensus       605 ivStiL~~L~~k~-p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~  681 (975)
T COG5181         605 IVSTILKLLRSKP-PDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFRS  681 (975)
T ss_pred             HHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence            3445567888888 89999999888777641  111122233333  456677777889998888888877763221100


Q ss_pred             HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhh-hhhHHHHHHhhcCCCHhHHHHHHHHHHHhccC
Q 043676          124 DLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQV-RPALPALAQLVHSNDEDVLTYACWSLSYLADG  202 (446)
Q Consensus       124 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~  202 (446)
                      -.-.-.|++|.+.-+| ++....+..+....+..++...|...-... ..+--.|+.+|.+-+.++++.|...++.++..
T Consensus       682 mqpPi~~ilP~ltPIL-rnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a  760 (975)
T COG5181         682 MQPPISGILPSLTPIL-RNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA  760 (975)
T ss_pred             cCCchhhccccccHhh-hhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence            0011346788999999 778889999999999999998755322221 33344577888888999999999999998865


Q ss_pred             CcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHH
Q 043676          203 TNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIIS  282 (446)
Q Consensus       203 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~  282 (446)
                      -..       .+++..|+.-|+..+...|....-+++-.+..+..       ..++|.++.=-..+ +..|+...+.+++
T Consensus       761 iGP-------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TP-e~nVQnGvLkam~  825 (975)
T COG5181         761 IGP-------QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETP-EANVQNGVLKAMC  825 (975)
T ss_pred             cCH-------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCc-hhHHHHhHHHHHH
Confidence            332       14455666666665555555555555555543332       23677777777777 8888888888888


Q ss_pred             HHhcC-CHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCC----HHHHHHHHHcCChHHHHhcccCCCHH
Q 043676          283 NITAG-NREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGT----QEQIKHLVREGCVKPLCDLLLCSDPE  357 (446)
Q Consensus       283 ~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~----~~~~~~l~~~~~i~~L~~ll~~~~~~  357 (446)
                      .+... ......++..  +.|.|-+.+.+.|+--|+.|...+.+++.++.    .+..-.     .+..|..-+-++.|.
T Consensus       826 fmFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IH-----LlNllwpNIle~sPh  898 (975)
T COG5181         826 FMFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIH-----LLNLLWPNILEPSPH  898 (975)
T ss_pred             HHHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHH-----HHHHhhhhccCCCcH
Confidence            77542 2333333333  77888888989999999999999999987632    222222     223333334567888


Q ss_pred             HHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHH
Q 043676          358 IVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKT  423 (446)
Q Consensus       358 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~  423 (446)
                      +.....+++..+...-..                    .-.+..+++=+-|++..++++.-...+.
T Consensus       899 vi~~~~Eg~e~~~~~lg~--------------------g~~m~Yv~qGLFHPs~~VRk~ywtvyn~  944 (975)
T COG5181         899 VIQSFDEGMESFATVLGS--------------------GAMMKYVQQGLFHPSSTVRKRYWTVYNI  944 (975)
T ss_pred             HHHHHHHHHHHHHHHhcc--------------------HHHHHHHHHhccCchHHHHHHHHHHHhh
Confidence            888877777765433221                    1123446666788888887665444443

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.92  E-value=9.4e-08  Score=84.08  Aligned_cols=266  Identities=16%  Similarity=0.115  Sum_probs=179.1

Q ss_pred             CChHHHHHhhcCCC--HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChh
Q 043676            2 GSFPALVAGVWSDD--NSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSE   79 (446)
Q Consensus         2 ~~i~~l~~~l~s~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~   79 (446)
                      |.+..|++++.+++  .+++.++++.|..+...   ++.+.+...| +..++.+-+....++.+...+.+|.++..++.+
T Consensus       180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a---eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee  255 (832)
T KOG3678|consen  180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVA---ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE  255 (832)
T ss_pred             chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh---hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence            56788999999887  45699999999998774   5566677766 666666666655589999999999999999999


Q ss_pred             hHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhC-CChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHh
Q 043676           80 NTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAG-DSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNF  158 (446)
Q Consensus        80 ~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l  158 (446)
                      ....++..|+++.++--.+..++.+..+|..+|+|++. .....+..+++..+-+-|.-+- .+.|+-++.++|.+...+
T Consensus       256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~vl  334 (832)
T KOG3678|consen  256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAVL  334 (832)
T ss_pred             HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhhh
Confidence            99999999999999998888899999999999999984 4445666777766655555444 666888999999999999


Q ss_pred             hcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHH
Q 043676          159 CRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTV  238 (446)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l  238 (446)
                      +............+.+..+-.++.+-|+.-...          ...+..+ -...+.++.|+.+|+++-.+.+..+++-+
T Consensus       335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR----------D~hd~aQ-G~~~d~LqRLvPlLdS~R~EAq~i~AF~l  403 (832)
T KOG3678|consen  335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFAR----------DAHDYAQ-GRGPDDLQRLVPLLDSNRLEAQCIGAFYL  403 (832)
T ss_pred             hhhhhhhHHHhhccchhhhhhhhhccCcchhhh----------hhhhhhc-cCChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence            988755555555555555555555544432111          0010000 11114567788888765444443333322


Q ss_pred             HHhh--cCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHH
Q 043676          239 GNIV--TGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNI  284 (446)
Q Consensus       239 ~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l  284 (446)
                      +.=+  .......+.+-+-|.++.|-++..++ +..-.+.|-.+|.-+
T Consensus       404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtvi  450 (832)
T KOG3678|consen  404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVI  450 (832)
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHh
Confidence            2111  11111223344668888888888876 554444444455444

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.88  E-value=8.5e-07  Score=85.52  Aligned_cols=375  Identities=13%  Similarity=0.097  Sum_probs=228.8

Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcC--CChhhHHHHHh
Q 043676            9 AGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIAS--GTSENTNVVID   86 (446)
Q Consensus         9 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~   86 (446)
                      +.-+..++.++..++.-+.+++..-....    ...++++.+..+..++. ..++..|...+.++..  ..+.   . ..
T Consensus       244 ~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~----~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~---d-~~  314 (759)
T KOG0211|consen  244 SLCQDDTPMVRRAVASNLGNIAKVLESEI----VKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDD---D-VV  314 (759)
T ss_pred             hhccccchhhHHHHHhhhHHHHHHHHHHH----HHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCch---h-hh
Confidence            33445556777777776666665543322    22356777777777776 5777777766666654  1120   1 11


Q ss_pred             cCChHHHHHhhCCCCHHHHHHHHHHHHHhhC----------------------------------------CChHHHHHH
Q 043676           87 HGAVPIFVKLLSSPSDDVREQAVWALGNVAG----------------------------------------DSPRCRDLV  126 (446)
Q Consensus        87 ~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~----------------------------------------~~~~~~~~~  126 (446)
                      ..+.+.++...++++..++.........+..                                        .+..+...+
T Consensus       315 ~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i  394 (759)
T KOG0211|consen  315 KSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNI  394 (759)
T ss_pred             hhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCccccccc
Confidence            2234555666655555554444433333321                                        000011111


Q ss_pred             HHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHH
Q 043676          127 LSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDK  206 (446)
Q Consensus       127 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~  206 (446)
                      ....+++.+-.+. .+.+..++...+.....+.--.+  .........|.....+++.++.++.+..+.+..+-...+..
T Consensus       395 ~~~~ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~  471 (759)
T KOG0211|consen  395 PDSSILPEVQVLV-LDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVI  471 (759)
T ss_pred             chhhhhHHHHHHH-hcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcc
Confidence            1122222222222 34444454444443333332221  22234567788888899999999999998776655443333


Q ss_pred             HHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc
Q 043676          207 IQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA  286 (446)
Q Consensus       207 ~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~  286 (446)
                      -........++.+..+-....++++.+..+.+..++....   ..+++...-+.+...+.+. ...+++.|+..+..++.
T Consensus       472 g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~  547 (759)
T KOG0211|consen  472 GISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVE  547 (759)
T ss_pred             cchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHH
Confidence            3334555778888888877889999999999988886433   3445555666677777776 78899999999988876


Q ss_pred             CCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHH
Q 043676          287 GNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGL  366 (446)
Q Consensus       287 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l  366 (446)
                      ...   ........++.++.....++...|...+.++..++...+.+.    ..+..++.+.++..++.++|+..+++.|
T Consensus       548 ~~G---~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei----~~~~Llp~~~~l~~D~vanVR~nvak~L  620 (759)
T KOG0211|consen  548 TFG---SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI----TCEDLLPVFLDLVKDPVANVRINVAKHL  620 (759)
T ss_pred             HhC---cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH----HHHHHhHHHHHhccCCchhhhhhHHHHH
Confidence            211   112223467777777776678899999999988766433333    3344789999999999999999999999


Q ss_pred             HHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHH
Q 043676          367 ENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFK  422 (446)
Q Consensus       367 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~  422 (446)
                      ..+...-...                ..+....+.++.+-.+++.+++-.|..+..
T Consensus       621 ~~i~~~L~~~----------------~~~~~v~pll~~L~~d~~~dvr~~a~~a~~  660 (759)
T KOG0211|consen  621 PKILKLLDES----------------VRDEEVLPLLETLSSDQELDVRYRAILAFG  660 (759)
T ss_pred             HHHHhhcchH----------------HHHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence            9987754332                233334566777777788777776665554

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.88  E-value=2.5e-07  Score=88.96  Aligned_cols=273  Identities=17%  Similarity=0.226  Sum_probs=206.0

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHH
Q 043676           14 DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIF   93 (446)
Q Consensus        14 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L   93 (446)
                      .....|+.|.+.-....+..+.++.+       +|..++.|-++-   -|..|+..|+....-.+-....-..-|+.|.+
T Consensus       448 ~FFteQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLSQv---HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYV  517 (1387)
T KOG1517|consen  448 PFFTEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLSQV---HRLRALVLLARFLDLGPWAVDLALSVGIFPYV  517 (1387)
T ss_pred             chHHHHHHHHHHHHHhccccCCChHh-------cchHHHHHHHHH---HHHHHHHHHHHHhccchhhhhhhhccchHHHH
Confidence            34456777777777666655455433       777777777654   36678888988887667777777788999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcccc--chhHHHHHHHHHHHhhcCCCCCChhhh-
Q 043676           94 VKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHA--KLSMLRNATRTLSNFCRGKPEPPFDQV-  170 (446)
Q Consensus        94 ~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~-  170 (446)
                      +++|+++-.++|..-+.+...|...++.|+..+++.++-..+++.+..+.  +++-+..++.+|..++.+.+....... 
T Consensus       518 LKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~  597 (1387)
T KOG1517|consen  518 LKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLN  597 (1387)
T ss_pred             HHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcc
Confidence            99999999999999999999998888889999999988888888884422  457788899999999998754444433 


Q ss_pred             hhhHHHHHHhhcCC-CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCC----
Q 043676          171 RPALPALAQLVHSN-DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGD----  245 (446)
Q Consensus       171 ~~~~~~l~~ll~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~----  245 (446)
                      .+.+......+.++ .+-++..++-||+.|..+.+...-.-.+.+..+.|+.+|.++-++||..|+.+|+.+....    
T Consensus       598 ~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~f  677 (1387)
T KOG1517|consen  598 GNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNF  677 (1387)
T ss_pred             ccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccccccc
Confidence            57777778888875 6889999999999999887755444556688999999999999999999999999998742    


Q ss_pred             chhhHHH------------HhcCCh---HHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043676          246 DFQTQCI------------INHGAV---PYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVID  297 (446)
Q Consensus       246 ~~~~~~~------------~~~~~~---~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~  297 (446)
                      ++.....            ++..+.   -.++..+++. .+-++.+.+-+++.+..+.........-
T Consensus       678 de~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va~  743 (1387)
T KOG1517|consen  678 DEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVAG  743 (1387)
T ss_pred             chhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHhh
Confidence            2222111            122222   2566677778 8899999999999998776555544443

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.87  E-value=3e-07  Score=81.02  Aligned_cols=272  Identities=16%  Similarity=0.165  Sum_probs=186.9

Q ss_pred             HHHHHhcCCHHHHHHhhcCCCC-hHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHh
Q 043676           38 IEKVIQSGVVPRFVEFLMREDY-PQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSS-PSDDVREQAVWALGNV  115 (446)
Q Consensus        38 ~~~~~~~~~~~~L~~ll~~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~-~~~~v~~~a~~~l~~l  115 (446)
                      ++.+...|++..|++++..++. ..++.+|.+.|-.+..  .++++.+...| +..++.+-+. ..++.....+.+|.++
T Consensus       173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m  249 (832)
T KOG3678|consen  173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM  249 (832)
T ss_pred             hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence            3455567899999999999883 2469999999999876  67888888777 5555555544 5688899999999999


Q ss_pred             hCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC--CCCChhhhhhhHHHHHHhhcCCCHhHHHHHH
Q 043676          116 AGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK--PEPPFDQVRPALPALAQLVHSNDEDVLTYAC  193 (446)
Q Consensus       116 ~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~  193 (446)
                      ...+.+....++..|++..++-.. +..++.+.++++.+|.|++-+.  .....+....+-..|..+-.+.|+-++.+++
T Consensus       250 FKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC  328 (832)
T KOG3678|consen  250 FKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC  328 (832)
T ss_pred             hhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence            988888888899999999988887 6678999999999999998876  2233344456667777777778899999999


Q ss_pred             HHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHH
Q 043676          194 WSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEII  273 (446)
Q Consensus       194 ~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v  273 (446)
                      -+++.++.+.+ ....+.+.|.+...-.++.+-++.--..   --...+.+.        ....++.|+.+|.+. ..+.
T Consensus       329 lAV~vlat~KE-~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~--------~~d~LqRLvPlLdS~-R~EA  395 (832)
T KOG3678|consen  329 LAVAVLATNKE-VEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGR--------GPDDLQRLVPLLDSN-RLEA  395 (832)
T ss_pred             HHHhhhhhhhh-hhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccC--------ChHHHHHhhhhhhcc-hhhh
Confidence            99999987755 3334666777766666666555432111   011111111        123567888888866 5444


Q ss_pred             HHHHHHHHHHHhc-CCHHH-HHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHh
Q 043676          274 KKEISWIISNITA-GNREQ-IQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNA  326 (446)
Q Consensus       274 ~~~a~~~l~~l~~-~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  326 (446)
                      +.-+++-++.=+. .+... ...+.+-|.++.|-++..+.+.--.+.|-.+|.-+
T Consensus       396 q~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi  450 (832)
T KOG3678|consen  396 QCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI  450 (832)
T ss_pred             hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence            4443333332221 11122 23344678899999988876655455555555544

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.84  E-value=3.3e-06  Score=79.22  Aligned_cols=282  Identities=21%  Similarity=0.243  Sum_probs=168.2

Q ss_pred             hcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChH
Q 043676           54 LMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALI  133 (446)
Q Consensus        54 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~  133 (446)
                      ..++. +-+|..|+.++-++-+-+++....+     ++.+-.+|.+.++.|.-.|+.++-.+|-+.   -+.+  .+-..
T Consensus       152 ~~D~s-~yVRk~AA~AIpKLYsLd~e~k~qL-----~e~I~~LLaD~splVvgsAv~AF~evCPer---ldLI--Hknyr  220 (968)
T KOG1060|consen  152 VTDPS-PYVRKTAAHAIPKLYSLDPEQKDQL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPER---LDLI--HKNYR  220 (968)
T ss_pred             hcCCc-HHHHHHHHHhhHHHhcCChhhHHHH-----HHHHHHHhcCCCCcchhHHHHHHHHhchhH---HHHh--hHHHH
Confidence            33444 6666666666666665555555433     455556677777777777777777776322   1122  12345


Q ss_pred             HHHHHhccccchhHHHHHHHHHHHhhcCC-CCCC----------------------------hhhhhhhHHHHHHhhcCC
Q 043676          134 PLLAELNEHAKLSMLRNATRTLSNFCRGK-PEPP----------------------------FDQVRPALPALAQLVHSN  184 (446)
Q Consensus       134 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~----------------------------~~~~~~~~~~l~~ll~~~  184 (446)
                      .+++++ .+-++-=+...+..|...++.. +...                            ..-..-+++..-.++.+.
T Consensus       221 klC~ll-~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~  299 (968)
T KOG1060|consen  221 KLCRLL-PDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSR  299 (968)
T ss_pred             HHHhhc-cchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcC
Confidence            666666 3333333444555555555443 1110                            011133445556677888


Q ss_pred             CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHH
Q 043676          185 DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDM  264 (446)
Q Consensus       185 ~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~  264 (446)
                      ++.+.-.++.+++.++...+  ..     .+++.|+.+|++ +..++...+..+..++...+....        |.+-.+
T Consensus       300 n~sVVmA~aql~y~lAP~~~--~~-----~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~--------P~lKsF  363 (968)
T KOG1060|consen  300 NPSVVMAVAQLFYHLAPKNQ--VT-----KIAKALVRLLRS-NREVQYVVLQNIATISIKRPTLFE--------PHLKSF  363 (968)
T ss_pred             CcHHHHHHHhHHHhhCCHHH--HH-----HHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhhhh--------hhhhce
Confidence            99999999999999885432  22     556788888866 445777788888888775554333        333333


Q ss_pred             hc-cCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCC
Q 043676          265 LV-HNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGC  343 (446)
Q Consensus       265 l~-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~  343 (446)
                      .- +.....++..=+.+|++++...  ++.     .+++.+...+++.+..+...+..+|+.++.... .     +...+
T Consensus       364 fv~ssDp~~vk~lKleiLs~La~es--ni~-----~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~-s-----v~~tC  430 (968)
T KOG1060|consen  364 FVRSSDPTQVKILKLEILSNLANES--NIS-----EILRELQTYIKSSDRSFAAAAVKAIGRCASRIG-S-----VTDTC  430 (968)
T ss_pred             EeecCCHHHHHHHHHHHHHHHhhhc--cHH-----HHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC-c-----hhhHH
Confidence            22 2214455555666777775421  111     245566677777766777778888887766421 1     22235


Q ss_pred             hHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhh
Q 043676          344 VKPLCDLLLCSDPEIVTVCLIGLENILKVGEAE  376 (446)
Q Consensus       344 i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~  376 (446)
                      +..|+.++++.+..+...+.-.|..+++..+..
T Consensus       431 L~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~  463 (968)
T KOG1060|consen  431 LNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAE  463 (968)
T ss_pred             HHHHHHHHhcccchhHHHHHHHHHHHHhhChHH
Confidence            777888888888888777777888877765554

>PF05536 Neurochondrin: Neurochondrin

Probab=98.84  E-value=9.8e-06  Score=76.87  Aligned_cols=194  Identities=20%  Similarity=0.155  Sum_probs=134.4

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCc--HHHHHhcCCHHHHHHhhcCCC------ChHHHHHHHHHHHHHc
Q 043676            3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPP--IEKVIQSGVVPRFVEFLMRED------YPQLQYEAAWVLINIA   74 (446)
Q Consensus         3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~--~~~~~~~~~~~~L~~ll~~~~------~~~~~~~a~~~L~~l~   74 (446)
                      .+...+++|++.+..-++.++..+.+++..+....  .+.+.+.-+.+.+-++|+++.      ....+..|+.+|..++
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            35677889999888888999999999887642112  335777777889999998722      2577888889999999


Q ss_pred             CCChhhHHHHHhcCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHH
Q 043676           75 SGTSENTNVVIDHGAVPIFVKLLSSPSD-DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATR  153 (446)
Q Consensus        75 ~~~~~~~~~~~~~~~i~~L~~~L~~~~~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~  153 (446)
                      . .|+....---.+-||.|++.+.+.+. .+...|+.+|..++ ..+..+..+.+.|.++.++..+.+  .+...+.++.
T Consensus        86 ~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al~  161 (543)
T PF05536_consen   86 R-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN--QSFQMEIALN  161 (543)
T ss_pred             C-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHHHH
Confidence            8 55554222222568999999988666 99999999999999 666678899999999999999944  5566788888


Q ss_pred             HHHHhhcCCCCCC----hhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhc
Q 043676          154 TLSNFCRGKPEPP----FDQVRPALPALAQLVHSNDEDVLTYACWSLSYLA  200 (446)
Q Consensus       154 ~L~~l~~~~~~~~----~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~  200 (446)
                      ++.+++.......    ......+++.+...+.......+-.++..+..+.
T Consensus       162 lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L  212 (543)
T PF05536_consen  162 LLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFL  212 (543)
T ss_pred             HHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhc
Confidence            8888776543211    1122233444444444333334444444444444

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.82  E-value=1e-06  Score=82.11  Aligned_cols=316  Identities=14%  Similarity=0.092  Sum_probs=162.5

Q ss_pred             hcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChH
Q 043676           54 LMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALI  133 (446)
Q Consensus        54 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~  133 (446)
                      |++|+ +-+|-..++.|+.+-.  ++...     ..+|.+...|++++.-||++|..++..+-....    .+. .++-.
T Consensus       108 LQHPN-EyiRG~TLRFLckLkE--~ELle-----pl~p~IracleHrhsYVRrNAilaifsIyk~~~----~L~-pDape  174 (948)
T KOG1058|consen  108 LQHPN-EYIRGSTLRFLCKLKE--PELLE-----PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE----HLI-PDAPE  174 (948)
T ss_pred             ccCch-HhhcchhhhhhhhcCc--HHHhh-----hhHHHHHHHHhCcchhhhhhhheeehhHHhhhh----hhc-CChHH
Confidence            34555 5566666666665533  33222     346777888889999999999999988874321    111 11223


Q ss_pred             HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc---CCCHhHHHHHHHHHHHhccCCcHHHHHH
Q 043676          134 PLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH---SNDEDVLTYACWSLSYLADGTNDKIQAV  210 (446)
Q Consensus       134 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~---~~~~~v~~~~~~~l~~l~~~~~~~~~~~  210 (446)
                      .+-..|....|+..+++|.-.|...-..          ..+..+.....   +-++.++.-....+...+..++....  
T Consensus       175 Li~~fL~~e~DpsCkRNAFi~L~~~D~E----------rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~--  242 (948)
T KOG1058|consen  175 LIESFLLTEQDPSCKRNAFLMLFTTDPE----------RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKA--  242 (948)
T ss_pred             HHHHHHHhccCchhHHHHHHHHHhcCHH----------HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhh--
Confidence            3444555677888888887666543221          12222222222   22345555555555555554443332  


Q ss_pred             HHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHH------------------H---------------hcCC
Q 043676          211 IEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCI------------------I---------------NHGA  257 (446)
Q Consensus       211 ~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~------------------~---------------~~~~  257 (446)
                         ..+..+..+|.+.++.++..|+.++..++... ...+..                  +               -.++
T Consensus       243 ---~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p-~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l  318 (948)
T KOG1058|consen  243 ---RYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDP-TALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGL  318 (948)
T ss_pred             ---HHHHHHHHHHhcCCchhhhhhcceEEEccCCH-HHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHH
Confidence               44555666666665555555555555544421 111110                  0               0112


Q ss_pred             hHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHH-HHhcC------CcchHHHHHHHHHHhccCC
Q 043676          258 VPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVN-LLQNA------EFDTKKEAAWAISNATSGG  330 (446)
Q Consensus       258 ~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~-ll~~~------~~~v~~~a~~aL~~l~~~~  330 (446)
                      +--++.+|..+ +-++|..+......++..  .+...     ++..|-+ +.+..      +...|+.-..++..++.. 
T Consensus       319 ~mDvLrvLss~-dldvr~Ktldi~ldLvss--rNved-----iv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~-  389 (948)
T KOG1058|consen  319 IMDVLRVLSSP-DLDVRSKTLDIALDLVSS--RNVED-----IVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVK-  389 (948)
T ss_pred             HHHHHHHcCcc-cccHHHHHHHHHHhhhhh--ccHHH-----HHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhc-
Confidence            22233334444 444555444444444321  01111     1111111 11111      123355555555555443 


Q ss_pred             CHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCC
Q 043676          331 TQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDN  410 (446)
Q Consensus       331 ~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~  410 (446)
                      -++..     ..+++.|++.+.+.++.....++..+...++..++.+             ..+.    -..++.+-.-.+
T Consensus       390 Fp~~a-----atvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr-------------~~ii----~~l~~~~~~irS  447 (948)
T KOG1058|consen  390 FPEVA-----ATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR-------------ASII----EKLLETFPQIRS  447 (948)
T ss_pred             ChHHH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH-------------HHHH----HHHHHhhhhhcc
Confidence            22222     2368889999999999888888888888887766542             2221    112333333345


Q ss_pred             HHHHHHHHHHHHHhcCCCC
Q 043676          411 NEIHEKSVKIFKTYWCGRN  429 (446)
Q Consensus       411 ~~v~~~a~~~l~~~~~~~~  429 (446)
                      .++++-|.|++..|.++.+
T Consensus       448 ~ki~rgalwi~GeYce~~~  466 (948)
T KOG1058|consen  448 SKICRGALWILGEYCEGLS  466 (948)
T ss_pred             cccchhHHHHHHHHHhhhH
Confidence            5677778888887766554

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.82  E-value=6.2e-06  Score=77.48  Aligned_cols=367  Identities=14%  Similarity=0.140  Sum_probs=227.4

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHH
Q 043676            5 PALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVV   84 (446)
Q Consensus         5 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~   84 (446)
                      ..|.++|.|.....+..|.+-+..+...+ .+ .     +..+|..++...+.+ .+++...---|...+...++..  +
T Consensus        38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G-~d-v-----S~~Fp~VVKNVaskn-~EVKkLVyvYLlrYAEeqpdLA--L  107 (968)
T KOG1060|consen   38 DDLKQLLDSNKDSLKLEAMKRIIALIAKG-KD-V-----SLLFPAVVKNVASKN-IEVKKLVYVYLLRYAEEQPDLA--L  107 (968)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhcC-Cc-H-----HHHHHHHHHHhhccC-HHHHHHHHHHHHHHhhcCCCce--e
Confidence            35788899988888888888777665543 22 1     246888899999999 8999988888888887544322  1


Q ss_pred             HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC
Q 043676           85 IDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPE  164 (446)
Q Consensus        85 ~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~  164 (446)
                         =-|..+-+-|+++++.+|..|++++..+=-  +....      ++-.-++-...++.+-++..|+.++-.+-.-.+.
T Consensus       108 ---LSIntfQk~L~DpN~LiRasALRvlSsIRv--p~IaP------I~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e  176 (968)
T KOG1060|consen  108 ---LSINTFQKALKDPNQLIRASALRVLSSIRV--PMIAP------IMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE  176 (968)
T ss_pred             ---eeHHHHHhhhcCCcHHHHHHHHHHHHhcch--hhHHH------HHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh
Confidence               237888999999999999999999886631  11111      1111122233677899999999999988766533


Q ss_pred             CChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcC
Q 043676          165 PPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTG  244 (446)
Q Consensus       165 ~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~  244 (446)
                      .    ...++..+-.+|.+.++.|.-.|+.++-.+|...-+...     +-...+.+++.+-+.--+...+..|...+++
T Consensus       177 ~----k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIH-----knyrklC~ll~dvdeWgQvvlI~mL~RYAR~  247 (968)
T KOG1060|consen  177 Q----KDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIH-----KNYRKLCRLLPDVDEWGQVVLINMLTRYARH  247 (968)
T ss_pred             h----HHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhh-----HHHHHHHhhccchhhhhHHHHHHHHHHHHHh
Confidence            2    235667777888999999999999999888854333222     4445666666664444444455555444432


Q ss_pred             C---chhh---------------------HHHH-hc---CChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 043676          245 D---DFQT---------------------QCII-NH---GAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVI  296 (446)
Q Consensus       245 ~---~~~~---------------------~~~~-~~---~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~  296 (446)
                      .   +...                     .... +.   -+++..-.++.+. ++.|...++.+...++-.  ....   
T Consensus       248 ~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~-n~sVVmA~aql~y~lAP~--~~~~---  321 (968)
T KOG1060|consen  248 QLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSR-NPSVVMAVAQLFYHLAPK--NQVT---  321 (968)
T ss_pred             cCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcC-CcHHHHHHHhHHHhhCCH--HHHH---
Confidence            1   1000                     0000 00   0123334455666 778888888888888532  2211   


Q ss_pred             HcCChHHHHHHHhcCCcchHHHHHHHHHHhccCC----------------CHHHHH--------HHHHcCC----hHHHH
Q 043676          297 DAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGG----------------TQEQIK--------HLVREGC----VKPLC  348 (446)
Q Consensus       297 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~----------------~~~~~~--------~l~~~~~----i~~L~  348 (446)
                        .+++.|+++|.+ +..+|...+..+..++...                ++.+.+        .+...+-    ++.+.
T Consensus       322 --~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q  398 (968)
T KOG1060|consen  322 --KIAKALVRLLRS-NREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQ  398 (968)
T ss_pred             --HHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHH
Confidence              467788887775 4666666777776665431                222221        1222222    23333


Q ss_pred             hcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 043676          349 DLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGR  428 (446)
Q Consensus       349 ~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~  428 (446)
                      ..+++.+.++...+..+|..+.......                  ...++.-|..++.+.++.|...|...|.++...+
T Consensus       399 ~YI~s~d~~faa~aV~AiGrCA~~~~sv------------------~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~  460 (968)
T KOG1060|consen  399 TYIKSSDRSFAAAAVKAIGRCASRIGSV------------------TDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKD  460 (968)
T ss_pred             HHHhcCchhHHHHHHHHHHHHHHhhCch------------------hhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhC
Confidence            4445666667777777777765543222                  2233555666777777777777777777776543

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=7.6e-06  Score=79.31  Aligned_cols=303  Identities=14%  Similarity=0.223  Sum_probs=204.0

Q ss_pred             CCChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChh
Q 043676            1 LGSFPALVAGVWS-DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSE   79 (446)
Q Consensus         1 ~~~i~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~   79 (446)
                      +|.++.+.-.+.+ .++.++..++..+..+...  .+....+...+.+..|+.+|.+.  |..|..++.+|..+++ +++
T Consensus      1770 ig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S-~~~ 1844 (2235)
T KOG1789|consen 1770 IGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSS-NGQ 1844 (2235)
T ss_pred             hcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhc-CcH
Confidence            4667778887775 6789999999998876664  78888999999999999999876  4889999999999998 778


Q ss_pred             hHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC---hHHHHHHHH----------cCChHHHHHHhccc-cc
Q 043676           80 NTNVVIDHGAVPIFVKLLSS-PSDDVREQAVWALGNVAGDS---PRCRDLVLS----------QGALIPLLAELNEH-AK  144 (446)
Q Consensus        80 ~~~~~~~~~~i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~---~~~~~~~~~----------~~~i~~l~~~l~~~-~~  144 (446)
                      ....-.+.|++..+..++-. .++..|.+++..++.+..+.   |..+-.+++          .+.-+..+..+... .+
T Consensus      1845 i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~En 1924 (2235)
T KOG1789|consen 1845 IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSEN 1924 (2235)
T ss_pred             HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCC
Confidence            77788888888888876654 67889999999999988432   222111111          01113334444211 12


Q ss_pred             h------hHHHHHHHHHHHhhcC----C---CC--------------------------------------CChhhhhhh
Q 043676          145 L------SMLRNATRTLSNFCRG----K---PE--------------------------------------PPFDQVRPA  173 (446)
Q Consensus       145 ~------~~~~~a~~~L~~l~~~----~---~~--------------------------------------~~~~~~~~~  173 (446)
                      +      ..+......+..+..+    .   +.                                      .......+.
T Consensus      1925 PELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~L 2004 (2235)
T KOG1789|consen 1925 PELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTEL 2004 (2235)
T ss_pred             cccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHH
Confidence            2      2222333333322211    0   00                                      011223455


Q ss_pred             HHHHHHhhcCCC--HhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHH
Q 043676          174 LPALAQLVHSND--EDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQC  251 (446)
Q Consensus       174 ~~~l~~ll~~~~--~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~  251 (446)
                      +..+.+++..++  .......-.++..+....+.....+-..|.+|.++..+...+..+-..|++.|..|+. +....+.
T Consensus      2005 Lek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lse-n~~C~~A 2083 (2235)
T KOG1789|consen 2005 LEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSE-NQFCCDA 2083 (2235)
T ss_pred             HHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhh-ccHHHHH
Confidence            555666666443  2333334444555555666666666667999999999999888888999999999997 4456666


Q ss_pred             HHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcC
Q 043676          252 IINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA-GNREQIQAVIDAGLIRPIVNLLQNA  311 (446)
Q Consensus       252 ~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~~~i~~L~~ll~~~  311 (446)
                      +.....+..++..++..  .....-|+.+|..+.. ...+......+.|++|.|+.+++..
T Consensus      2084 MA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2084 MAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred             HhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence            66667777788888765  3444577888888765 3445556667889999999999754

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.76  E-value=5.2e-07  Score=86.93  Aligned_cols=246  Identities=16%  Similarity=0.215  Sum_probs=189.9

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676            3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN   82 (446)
Q Consensus         3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~   82 (446)
                      .+|..++-|-|.  --|+.|+..|..++... .........-|+.|..+++|+++. .++|..-+-+-.++..-++.+..
T Consensus       473 QLPiVLQVLLSQ--vHRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ~  548 (1387)
T KOG1517|consen  473 QLPIVLQVLLSQ--VHRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQA  548 (1387)
T ss_pred             hcchHHHHHHHH--HHHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhHH
Confidence            456666666554  33667888888877765 566777778899999999999999 89999999999998887888988


Q ss_pred             HHHhcCChHHHHHhhCC---CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 043676           83 VVIDHGAVPIFVKLLSS---PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFC  159 (446)
Q Consensus        83 ~~~~~~~i~~L~~~L~~---~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  159 (446)
                      .+++.++-..+++.|.+   -+++-|..|+.+|..++.+-+..+....+.+.+...+..+..++.+-++.-++-+|+.|-
T Consensus       549 dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW  628 (1387)
T KOG1517|consen  549 DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLW  628 (1387)
T ss_pred             HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence            99988888999998877   246889999999999998888788888888889888888854456788899999999999


Q ss_pred             cCCCCCChh-hhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCC----cHHHHHH------------HHhCcH----HH
Q 043676          160 RGKPEPPFD-QVRPALPALAQLVHSNDEDVLTYACWSLSYLADGT----NDKIQAV------------IEAGVC----PR  218 (446)
Q Consensus       160 ~~~~~~~~~-~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~----~~~~~~~------------~~~~~~----~~  218 (446)
                      .+.+..+.. ...+....|..+|.++-++||..++.+|+.+..+.    ++.....            .+ ..+    ..
T Consensus       629 ~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E-~~i~~~~~~  707 (1387)
T KOG1517|consen  629 EDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIE-DLIIKGLMS  707 (1387)
T ss_pred             hhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHH-HHHHhhHHH
Confidence            887444443 44688899999999999999999999999998752    2222211            11 222    25


Q ss_pred             HHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHH
Q 043676          219 LVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCII  253 (446)
Q Consensus       219 l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~  253 (446)
                      ++.+++..++-++.+..-++..+..+.......+.
T Consensus       708 ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va  742 (1387)
T KOG1517|consen  708 LLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVA  742 (1387)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHh
Confidence            66667777888888888888887776655544333

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.74  E-value=9.2e-06  Score=73.01  Aligned_cols=334  Identities=15%  Similarity=0.080  Sum_probs=204.5

Q ss_pred             HHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccc-cchhHH
Q 043676           70 LINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEH-AKLSML  148 (446)
Q Consensus        70 L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~  148 (446)
                      |..+....++.+..+.-....+.+..++-+++.++|..+.+++..+..+... -..+.+.+.-..++.-|..+ .+..-+
T Consensus         7 Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER   85 (371)
T PF14664_consen    7 LVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVER   85 (371)
T ss_pred             HHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHH
Confidence            3333444454444444333455555455455599999999999999866554 45566666555555566443 344557


Q ss_pred             HHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCc
Q 043676          149 RNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSP  228 (446)
Q Consensus       149 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~  228 (446)
                      ++|+..+..+..... .......+++..++.+..+.++..+..++.+++.++-.+|+   .+..+|++..+.+.+.++..
T Consensus        86 ~QALkliR~~l~~~~-~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~  161 (371)
T PF14664_consen   86 EQALKLIRAFLEIKK-GPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSF  161 (371)
T ss_pred             HHHHHHHHHHHHhcC-CcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccH
Confidence            789999888877642 22234578899999999999999999999999999988774   46788999999999988666


Q ss_pred             cchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccC------chH--HHHHHHHHHHHHHhcCCHHHHHHHHH-cC
Q 043676          229 SVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHN------HEE--IIKKEISWIISNITAGNREQIQAVID-AG  299 (446)
Q Consensus       229 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~------~~~--~v~~~a~~~l~~l~~~~~~~~~~~~~-~~  299 (446)
                      ++....+.++..+.. .|..++.+...--++.++.-+.+.      .+.  +.-..+..++..+...=+.......+ ..
T Consensus       162 ~~~~~l~~~lL~lLd-~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~  240 (371)
T PF14664_consen  162 SISESLLDTLLYLLD-SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFR  240 (371)
T ss_pred             hHHHHHHHHHHHHhC-CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCch
Confidence            677788888888877 444555444333344444443322      022  23344555555554421211111112 14


Q ss_pred             ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHH------HcCCh---HHHHhcccCCC---HHHHHHHHHHHH
Q 043676          300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLV------REGCV---KPLCDLLLCSD---PEIVTVCLIGLE  367 (446)
Q Consensus       300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~------~~~~i---~~L~~ll~~~~---~~~~~~~~~~l~  367 (446)
                      .+..|+..+..+++++|+..+..+..+..-..+.....+.      ..+-+   ..+..-.....   |.....-...+.
T Consensus       241 ~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~  320 (371)
T PF14664_consen  241 GLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVN  320 (371)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHH
Confidence            7888999999999999999999999987643332211111      11111   00100000000   000000111111


Q ss_pred             HHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCC-CHHHHHHHHHHHHHhc
Q 043676          368 NILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHD-NNEIHEKSVKIFKTYW  425 (446)
Q Consensus       368 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~~~  425 (446)
                      +....                ....|.++|.++.|.++.... ++.+..+|.-+|..++
T Consensus       321 ~y~aL----------------ll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL  363 (371)
T PF14664_consen  321 HYLAL----------------LLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELL  363 (371)
T ss_pred             HHHHH----------------HHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            11111                356788999999999997766 8889999998888765

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.73  E-value=1.6e-07  Score=83.94  Aligned_cols=307  Identities=14%  Similarity=0.105  Sum_probs=195.2

Q ss_pred             HHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhcCC
Q 043676          106 EQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLVHSN  184 (446)
Q Consensus       106 ~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~  184 (446)
                      ..++.+|..++..-...|.-+.+..+.+.|++.| +.++.-+...+...++|+.-.. +........+++..++.++.+.
T Consensus       407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK  485 (743)
T COG5369         407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK  485 (743)
T ss_pred             HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence            3445556666655556677777888899999999 6666666667777777776554 5556666789999999999999


Q ss_pred             CHhHHHHHHHHHHHhccCCcHHHH-HHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCch---hhHHHHh----cC
Q 043676          185 DEDVLTYACWSLSYLADGTNDKIQ-AVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDF---QTQCIIN----HG  256 (446)
Q Consensus       185 ~~~v~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~---~~~~~~~----~~  256 (446)
                      |..++....|.+.++..+.+...+ .+...-.+..++.+..++...++..++.++.|++.....   ..+.+++    .-
T Consensus       486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y  565 (743)
T COG5369         486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY  565 (743)
T ss_pred             hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence            999999999999999977654422 355557789999999999999999999999999874332   1221111    12


Q ss_pred             ChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHH-HcCChHHHHHHHhcC--C---------cchHHHHHHHHH
Q 043676          257 AVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVI-DAGLIRPIVNLLQNA--E---------FDTKKEAAWAIS  324 (446)
Q Consensus       257 ~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~i~~L~~ll~~~--~---------~~v~~~a~~aL~  324 (446)
                      +...+++.+... ++-.-...++.|.++++.+......+. +..++..+...+...  +         ..+-..-.....
T Consensus       566 lfk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v  644 (743)
T COG5369         566 LFKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIV  644 (743)
T ss_pred             HHHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeee
Confidence            455677777766 665666678889888776555444444 344555555544321  1         111111111222


Q ss_pred             HhccCCCHHHHHHHHHcCCh--HHHHhc---ccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChH
Q 043676          325 NATSGGTQEQIKHLVREGCV--KPLCDL---LLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGL  399 (446)
Q Consensus       325 ~l~~~~~~~~~~~l~~~~~i--~~L~~l---l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  399 (446)
                      ++....+  ...    .+..  |.+-.+   -.+++.++.....|.+.++.-...... .   -.......+.+.+.|.-
T Consensus       645 ~l~e~~d--~f~----r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~-v---tratveR~~iL~~~G~~  714 (743)
T COG5369         645 NLSENSD--KFK----RLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSE-V---TRATVERIQILCANGIR  714 (743)
T ss_pred             ccccccc--ccc----cceecCCCccccccccCCCchhhhhccceEEEecccCccCCc-c---chhhHHHHHHHHHccHH
Confidence            2222110  000    0111  222111   122455677777787777432211111 0   01222346888888888


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHh
Q 043676          400 EKIENLQSHDNNEIHEKSVKIFKTY  424 (446)
Q Consensus       400 ~~l~~l~~~~~~~v~~~a~~~l~~~  424 (446)
                      +-+..++.++++.+++++..++.++
T Consensus       715 e~l~k~q~~~Sl~vrek~~taL~~l  739 (743)
T COG5369         715 EWLVKIQAKDSLIVREKIGTALENL  739 (743)
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHhh
Confidence            8899999999999999999888754

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.73  E-value=8.1e-06  Score=68.37  Aligned_cols=273  Identities=13%  Similarity=0.176  Sum_probs=173.1

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV   83 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   83 (446)
                      +..+++++++.+|.++..|...+..+....  -..-.-.+...++.+.+++.... +  ...|+.++.|++. ++..+..
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~~--~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq-~~~l~~~   78 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGRG--LQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQ-KEELRKK   78 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhccccc--hhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHh-hHHHHHH
Confidence            346788999999999999998888765541  11111112346788889988877 4  7789999999998 7888888


Q ss_pred             HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHc-----CChHHHHHHhcc-ccch-hHHHHHHHHHH
Q 043676           84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQ-----GALIPLLAELNE-HAKL-SMLRNATRTLS  156 (446)
Q Consensus        84 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-----~~i~~l~~~l~~-~~~~-~~~~~a~~~L~  156 (446)
                      +++. .+..++.++.++...+....+.+++|++.....+.......     .++..++....+ +.+. .-..+.+..+.
T Consensus        79 ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~  157 (353)
T KOG2973|consen   79 LLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA  157 (353)
T ss_pred             HHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence            8876 78888888888888888899999999998877665554332     233344443322 2221 23456677788


Q ss_pred             HhhcCCCCCChhhhhhhH--HHHHHhhcCCCHhHH-HHHHHHHHHhccCCcHHHHHHHHh--CcHHHHH-----------
Q 043676          157 NFCRGKPEPPFDQVRPAL--PALAQLVHSNDEDVL-TYACWSLSYLADGTNDKIQAVIEA--GVCPRLV-----------  220 (446)
Q Consensus       157 ~l~~~~~~~~~~~~~~~~--~~l~~ll~~~~~~v~-~~~~~~l~~l~~~~~~~~~~~~~~--~~~~~l~-----------  220 (446)
                      ++++....+........+  +.+..+-. .+..+| ...+.+|.|.|........ +...  .+++.++           
T Consensus       158 nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~-lL~e~~~lLp~iLlPlagpee~sE  235 (353)
T KOG2973|consen  158 NLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEV-LLDESINLLPAILLPLAGPEELSE  235 (353)
T ss_pred             HHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHH-HhcchHHHHHHHHhhcCCccccCH
Confidence            888776444443333222  23333333 444444 4467777777755442222 2221  2222222           


Q ss_pred             ----------HhcC-----CCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHh
Q 043676          221 ----------ELLG-----HPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNIT  285 (446)
Q Consensus       221 ----------~ll~-----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~  285 (446)
                                +++.     .+++.+|..-+.+|..|+. ....++.+...|+.+.+-.+=+...+++++..+-.....+.
T Consensus       236 Edm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv  314 (353)
T KOG2973|consen  236 EDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLV  314 (353)
T ss_pred             HHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence                      2222     1456789999999999987 44566677777777776666655546677665555555454


Q ss_pred             c
Q 043676          286 A  286 (446)
Q Consensus       286 ~  286 (446)
                      .
T Consensus       315 ~  315 (353)
T KOG2973|consen  315 R  315 (353)
T ss_pred             h
Confidence            4

>TIGR02270 conserved hypothetical protein

Probab=98.72  E-value=5.8e-06  Score=75.14  Aligned_cols=240  Identities=16%  Similarity=0.042  Sum_probs=152.6

Q ss_pred             hHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676            4 FPALVAGVW-SDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN   82 (446)
Q Consensus         4 i~~l~~~l~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~   82 (446)
                      ++.++..|. .+++.+...++..+.   ... ..        ..+..|+..+.+++ +.++..++.+|+.+-.       
T Consensus        56 ~~~L~~aL~~d~~~ev~~~aa~al~---~~~-~~--------~~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~-------  115 (410)
T TIGR02270        56 TELLVSALAEADEPGRVACAALALL---AQE-DA--------LDLRSVLAVLQAGP-EGLCAGIQAALGWLGG-------  115 (410)
T ss_pred             HHHHHHHHhhCCChhHHHHHHHHHh---ccC-Ch--------HHHHHHHHHhcCCC-HHHHHHHHHHHhcCCc-------
Confidence            455666664 455666555544442   111 11        12677778887777 6788888888876544       


Q ss_pred             HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 043676           83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK  162 (446)
Q Consensus        83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  162 (446)
                          ....+.|..+|++.++.++..++.+++..-.            ...+.+...+ ++.++.++..++.+|..+-.. 
T Consensus       116 ----~~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~-  177 (410)
T TIGR02270       116 ----RQAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAAL-THEDALVRAAALRALGELPRR-  177 (410)
T ss_pred             ----hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHh-cCCCHHHHHHHHHHHHhhccc-
Confidence                2346777788888888888777766665221            1234666677 577888888888888877543 


Q ss_pred             CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhh
Q 043676          163 PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIV  242 (446)
Q Consensus       163 ~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~  242 (446)
                               ...+.|...+.+.++.|+..++.++..+..  +         .....+..+...........+..++... 
T Consensus       178 ---------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~g~~~~~~l~~~lal~-  236 (410)
T TIGR02270       178 ---------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLEGGPHRQRLLVLLAVA-  236 (410)
T ss_pred             ---------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhccCccHHHHHHHHHHhC-
Confidence                     245667777778888888888888766532  1         1223344433333333333333333322 


Q ss_pred             cCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHH
Q 043676          243 TGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWA  322 (446)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a  322 (446)
                       ..+         ..++.|..+++++   .++..++++++.+  +++         ..++.|+..+.+  +.++..|..+
T Consensus       237 -~~~---------~a~~~L~~ll~d~---~vr~~a~~AlG~l--g~p---------~av~~L~~~l~d--~~~aR~A~eA  290 (410)
T TIGR02270       237 -GGP---------DAQAWLRELLQAA---ATRREALRAVGLV--GDV---------EAAPWCLEAMRE--PPWARLAGEA  290 (410)
T ss_pred             -Cch---------hHHHHHHHHhcCh---hhHHHHHHHHHHc--CCc---------chHHHHHHHhcC--cHHHHHHHHH
Confidence             111         3567788888776   4899999999987  333         367888888864  4499999999


Q ss_pred             HHHhcc
Q 043676          323 ISNATS  328 (446)
Q Consensus       323 L~~l~~  328 (446)
                      +..++-
T Consensus       291 ~~~ItG  296 (410)
T TIGR02270       291 FSLITG  296 (410)
T ss_pred             HHHhhC
Confidence            999975

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.70  E-value=8.9e-06  Score=75.50  Aligned_cols=301  Identities=11%  Similarity=0.117  Sum_probs=188.4

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCC-ChHHHHHHHHHHHHHcCCChhhHH
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRED-YPQLQYEAAWVLINIASGTSENTN   82 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~   82 (446)
                      +..+.+.|.|.|+.....|+.++.++.+.   +....+.. + ++   ++|.+++ .+-++..|+.||..+...+|+...
T Consensus       113 in~iknDL~srn~~fv~LAL~~I~niG~r---e~~ea~~~-D-I~---KlLvS~~~~~~vkqkaALclL~L~r~spDl~~  184 (938)
T KOG1077|consen  113 INSIKNDLSSRNPTFVCLALHCIANIGSR---EMAEAFAD-D-IP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN  184 (938)
T ss_pred             HHHHHhhhhcCCcHHHHHHHHHHHhhccH---hHHHHhhh-h-hH---HHHhCCcchHHHHHHHHHHHHHHHhcCccccC
Confidence            44566778888999999999999987654   22322222 2 33   5555554 246889999999999886655322


Q ss_pred             HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhc------------cccchhHHHH
Q 043676           83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELN------------EHAKLSMLRN  150 (446)
Q Consensus        83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~------------~~~~~~~~~~  150 (446)
                         ..+....++.+|.+.+-.+...+...+..++...|+....... -++..+.+...            .-+.|-++..
T Consensus       185 ---~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK  260 (938)
T KOG1077|consen  185 ---PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK  260 (938)
T ss_pred             ---hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence               2356788999999988888888888888888666543221110 01222222221            1134567777


Q ss_pred             HHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCC--C-----HhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc
Q 043676          151 ATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSN--D-----EDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELL  223 (446)
Q Consensus       151 a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~--~-----~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll  223 (446)
                      +++.|.++-...+........+++..+....+..  .     ......++.-..+++.+-+..-+.+.  ..+..|-+++
T Consensus       261 l~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fl  338 (938)
T KOG1077|consen  261 LLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFL  338 (938)
T ss_pred             HHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHh
Confidence            8888777722222222333344444444444421  1     22333344444444433332332222  5678899999


Q ss_pred             CCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH
Q 043676          224 GHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRP  303 (446)
Q Consensus       224 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~  303 (446)
                      .+.+..+|.-|+..++.|+...+ ..+ .++.. .+.++..|+...+..+|..|+..|..+|..  ++..     .++..
T Consensus       339 s~rE~NiRYLaLEsm~~L~ss~~-s~d-avK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~--~Nak-----~IV~e  408 (938)
T KOG1077|consen  339 SHRETNIRYLALESMCKLASSEF-SID-AVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDV--SNAK-----QIVAE  408 (938)
T ss_pred             hcccccchhhhHHHHHHHHhccc-hHH-HHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhch--hhHH-----HHHHH
Confidence            99999999999999999998633 233 33333 788899999655999999999999999753  2222     25666


Q ss_pred             HHHHHhcCCcchHHHHHHHHHHhcc
Q 043676          304 IVNLLQNAEFDTKKEAAWAISNATS  328 (446)
Q Consensus       304 L~~ll~~~~~~v~~~a~~aL~~l~~  328 (446)
                      |++.+.+.++.+|+...-=+.-++.
T Consensus       409 lLqYL~tAd~sireeivlKvAILaE  433 (938)
T KOG1077|consen  409 LLQYLETADYSIREEIVLKVAILAE  433 (938)
T ss_pred             HHHHHhhcchHHHHHHHHHHHHHHH
Confidence            7777877888888776655555554

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.68  E-value=1.8e-05  Score=76.03  Aligned_cols=284  Identities=13%  Similarity=0.123  Sum_probs=184.9

Q ss_pred             ChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHH
Q 043676           59 YPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAE  138 (446)
Q Consensus        59 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~  138 (446)
                      +..++.-|.-.|+.+..+.+..    -..+.-..+++.+++++++++..|..+|++++.++-+.        .+|-++..
T Consensus       832 ~~~ikvfa~LslGElgr~~~~s----~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~--------yLpfil~q  899 (1233)
T KOG1824|consen  832 SDSIKVFALLSLGELGRRKDLS----PQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPK--------YLPFILEQ  899 (1233)
T ss_pred             chhHHHHHHhhhhhhccCCCCC----cchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHh--------HHHHHHHH
Confidence            3688888999999988733221    12244568889999999999999999999999755321        35666666


Q ss_pred             hccccchhHHHHHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHH
Q 043676          139 LNEHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCP  217 (446)
Q Consensus       139 l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  217 (446)
                      +..  ++.=+.-.+..|....... ...-......+...|..-.....+..|.-+..||+.++..+++        .++|
T Consensus       900 i~s--qpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epe--------sLlp  969 (1233)
T KOG1824|consen  900 IES--QPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPE--------SLLP  969 (1233)
T ss_pred             Hhc--chHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChH--------HHHH
Confidence            622  2333333344444333322 1111222344455555555666778899999999999988775        4568


Q ss_pred             HHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043676          218 RLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVID  297 (446)
Q Consensus       218 ~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~  297 (446)
                      .|-..+.++.+..|..++.++.......+.-.+..++ ..+..++..++++ +.+||..|+.++...+...+..++.   
T Consensus       970 kL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk-~~ig~fl~~~~dp-Dl~VrrvaLvv~nSaahNKpslIrD--- 1044 (1233)
T KOG1824|consen  970 KLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLK-QQIGDFLKLLRDP-DLEVRRVALVVLNSAAHNKPSLIRD--- 1044 (1233)
T ss_pred             HHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHH-HHHHHHHHHHhCC-chhHHHHHHHHHHHHHccCHhHHHH---
Confidence            8999999999999999888887776666655554443 4677888999999 9999999999999887666665553   


Q ss_pred             cCChHHHHHHHhc----------------------CCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCC
Q 043676          298 AGLIRPIVNLLQN----------------------AEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSD  355 (446)
Q Consensus       298 ~~~i~~L~~ll~~----------------------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~  355 (446)
                        ++|.|+..+-+                      ..-++|+.|..++..+...+-  ....+.+  ++..+..=|++ .
T Consensus      1045 --llpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscl--d~~dit~--Fl~~~~~GL~D-h 1117 (1233)
T KOG1824|consen 1045 --LLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCL--DRLDITE--FLNHVEDGLED-H 1117 (1233)
T ss_pred             --HHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhh--hhccHHH--HHHHHHhhcch-h
Confidence              34444433322                      123678888888888866421  1111111  12222222333 3


Q ss_pred             HHHHHHHHHHHHHHHHhhhhh
Q 043676          356 PEIVTVCLIGLENILKVGEAE  376 (446)
Q Consensus       356 ~~~~~~~~~~l~~l~~~~~~~  376 (446)
                      .+++..+.-.+.++...++..
T Consensus      1118 ydiKmlt~l~l~rLa~lcPs~ 1138 (1233)
T KOG1824|consen 1118 YDIKMLTFLMLARLADLCPSA 1138 (1233)
T ss_pred             hHHHHHHHHHHHHHHhhCcHH
Confidence            677777778888888777664

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.67  E-value=9.5e-05  Score=68.61  Aligned_cols=350  Identities=14%  Similarity=0.100  Sum_probs=206.8

Q ss_pred             hHHHHHhhcCCCH---HHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhh
Q 043676            4 FPALVAGVWSDDN---SLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSEN   80 (446)
Q Consensus         4 i~~l~~~l~s~~~---~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~   80 (446)
                      +|.++..|.+.+.   ......+.+|..++..  .+-.+.+.. .++..+....+...+.+....++.++..+.....+.
T Consensus         1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~--~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~   77 (415)
T PF12460_consen    1 LPALLALLPDSDSSTDSNYERILEALAALSTS--PQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQED   77 (415)
T ss_pred             CchHHhhCCCCCCcchhHHHHHHHHHHHHHCC--hhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccc
Confidence            5788999987654   5677888889888775  232333222 555666555554444677778888888877533222


Q ss_pred             -----HHHHHhcCChHHHHHhhCC-----C--CHHHHHHHHHHHHHhhCCChH-HHHHHHHcCChHHHHHHhc-------
Q 043676           81 -----TNVVIDHGAVPIFVKLLSS-----P--SDDVREQAVWALGNVAGDSPR-CRDLVLSQGALIPLLAELN-------  140 (446)
Q Consensus        81 -----~~~~~~~~~i~~L~~~L~~-----~--~~~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~i~~l~~~l~-------  140 (446)
                           .....+..+++.+.++.-.     .  ++.+...+..++..++..-+. .++.+     +..+..++.       
T Consensus        78 ~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~-----~~~~~~lf~~~~~~~~  152 (415)
T PF12460_consen   78 KQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEI-----LDELYSLFLSPKSFSP  152 (415)
T ss_pred             cccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHH-----HHHHHHHHccccccCC
Confidence                 2333344467777765532     1  256666666666666644433 22222     334444332       


Q ss_pred             ----cccchhHHHHHHHHHHH-hhcCCCCCChhhhhhhHHHHHHhhcC-CCHhHHHHHHHHHHHhccCC--cHHHHHHHH
Q 043676          141 ----EHAKLSMLRNATRTLSN-FCRGKPEPPFDQVRPALPALAQLVHS-NDEDVLTYACWSLSYLADGT--NDKIQAVIE  212 (446)
Q Consensus       141 ----~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~v~~~~~~~l~~l~~~~--~~~~~~~~~  212 (446)
                          ..............+.. ++.-++..........+..++.+..+ +++..+..++.+++.++...  ++...    
T Consensus       153 ~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~----  228 (415)
T PF12460_consen  153 FQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD----  228 (415)
T ss_pred             CCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH----
Confidence                00000112222222222 22222333333445577777777654 46888999999999888652  22222    


Q ss_pred             hCcHHHHHHhc-CCCCccchhHHHHHHHHhh----cCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC
Q 043676          213 AGVCPRLVELL-GHPSPSVLTPALRTVGNIV----TGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG  287 (446)
Q Consensus       213 ~~~~~~l~~ll-~~~~~~~~~~a~~~l~~l~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~  287 (446)
                       +++..+.... ...+...+..++.++..++    ........     .++..++.++.++   .+...++..+.-+...
T Consensus       229 -~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~~~---~~g~~aA~~f~il~~d  299 (415)
T PF12460_consen  229 -EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLSSP---ELGQQAAKAFGILLSD  299 (415)
T ss_pred             -HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhCCh---hhHHHHHHHHhhHhcC
Confidence             3344444444 3344455555555554443    22222222     2567788888764   6778888888888764


Q ss_pred             CH--------HHHHHHHHc----CChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCC
Q 043676          288 NR--------EQIQAVIDA----GLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSD  355 (446)
Q Consensus       288 ~~--------~~~~~~~~~----~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~  355 (446)
                      .+        ..++.+.+.    .++|.|++..+..+...|...+.||.++..+........ .-...+|.|++.|+.++
T Consensus       300 ~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~-~l~~LlPLLlqsL~~~~  378 (415)
T PF12460_consen  300 SDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLP-ELPTLLPLLLQSLSLPD  378 (415)
T ss_pred             cHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHH-HHHHHHHHHHHHhCCCC
Confidence            22        233334433    357778777777777799999999999998755443322 12347999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhh
Q 043676          356 PEIVTVCLIGLENILKVGEA  375 (446)
Q Consensus       356 ~~~~~~~~~~l~~l~~~~~~  375 (446)
                      ++++..++.+|..++...+.
T Consensus       379 ~~v~~s~L~tL~~~l~~~~~  398 (415)
T PF12460_consen  379 ADVLLSSLETLKMILEEAPE  398 (415)
T ss_pred             HHHHHHHHHHHHHHHHcCHH
Confidence            99999999999998876533

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.67  E-value=4.5e-07  Score=65.81  Aligned_cols=153  Identities=7%  Similarity=-0.002  Sum_probs=123.0

Q ss_pred             ChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHH
Q 043676          257 AVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIK  336 (446)
Q Consensus       257 ~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~  336 (446)
                      .++.++.-.....+.+.++....-|+|++. +|.+...+.+.+++..+++.+..++..++..++.+|+|++.  ++.+.+
T Consensus        17 Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~--d~~n~~   93 (173)
T KOG4646|consen   17 YLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL--DKTNAK   93 (173)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc--ChHHHH
Confidence            456667666655578889999999999965 47777889999999999999999999999999999999998  688999


Q ss_pred             HHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHH
Q 043676          337 HLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEK  416 (446)
Q Consensus       337 ~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~  416 (446)
                      .+.+.++++.++..++++...+...++.++..+..-+..             .+..+-....++.+++...+.+-+.+..
T Consensus        94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt-------------~r~ell~p~Vv~~v~r~~~s~s~~~rnL  160 (173)
T KOG4646|consen   94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERT-------------ERDELLSPAVVRTVQRWRESKSHDERNL  160 (173)
T ss_pred             HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccc-------------hhHHhccHHHHHHHHHHHHHhhHHHHHH
Confidence            999999999999999999999999888887765432222             3566666667777777776666666777


Q ss_pred             HHHHHHHhc
Q 043676          417 SVKIFKTYW  425 (446)
Q Consensus       417 a~~~l~~~~  425 (446)
                      |...++.+-
T Consensus       161 a~~fl~~~~  169 (173)
T KOG4646|consen  161 ASAFLDKHV  169 (173)
T ss_pred             HHHHHHhhc
Confidence            777776653

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.66  E-value=2.9e-07  Score=82.39  Aligned_cols=285  Identities=15%  Similarity=0.190  Sum_probs=187.6

Q ss_pred             HHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC
Q 043676           39 EKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGD  118 (446)
Q Consensus        39 ~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~  118 (446)
                      ..+.+..+.+.|+++|..|+ ..+..-+...++|..-.-...+..+.+.|++..++.++.+.+..++....|++.++..+
T Consensus       425 TgL~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyn  503 (743)
T COG5369         425 TGLLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYN  503 (743)
T ss_pred             hhccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhc
Confidence            34556778999999999988 68888888999999887778889999999999999999999999999999999999966


Q ss_pred             ChHH-HHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC-C---Chh----hhhhhHHHHHHhhcCCCHhHH
Q 043676          119 SPRC-RDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPE-P---PFD----QVRPALPALAQLVHSNDEDVL  189 (446)
Q Consensus       119 ~~~~-~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~---~~~----~~~~~~~~l~~ll~~~~~~v~  189 (446)
                      ..+. +-......++..++.+. .++...++.+++..|.|+..+... .   +..    -..-....+...++..+|-..
T Consensus       504 cq~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i  582 (743)
T COG5369         504 CQKNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEI  582 (743)
T ss_pred             CcchhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhh
Confidence            5432 33455666788999888 788899999999999999885522 1   111    112356677777887777777


Q ss_pred             HHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhcCC---------C--CccchhHHHHHHHHhhcCCchhhHHHHhcCC
Q 043676          190 TYACWSLSYLADGTNDKIQAVIEA-GVCPRLVELLGH---------P--SPSVLTPALRTVGNIVTGDDFQTQCIINHGA  257 (446)
Q Consensus       190 ~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~l~~ll~~---------~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~  257 (446)
                      ...+..+.+++..++.....+.+. ..+..+..++..         +  +..+...-....-++....+..........-
T Consensus       583 ~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~p~  662 (743)
T COG5369         583 LEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTTPH  662 (743)
T ss_pred             hhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecCCC
Confidence            777888888876666555544433 444444444322         1  1112122222222333222211111110001


Q ss_pred             hHHHHHHhccCchHHHHHHHHHHHHHHhc---C------CHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHh
Q 043676          258 VPYLLDMLVHNHEEIIKKEISWIISNITA---G------NREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNA  326 (446)
Q Consensus       258 ~~~l~~~l~~~~~~~v~~~a~~~l~~l~~---~------~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  326 (446)
                      .+..-+--..+ +.+.-.+..|.+.|+.-   +      +.+.++.+.+.|+-+.+..+..+.++.+++.+-.+|.++
T Consensus       663 ~D~~~~d~~~~-NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l  739 (743)
T COG5369         663 LDNMKKDSTTR-NDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL  739 (743)
T ss_pred             ccccccccCCC-chhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence            11010001112 45566777888877642   1      235566677777777777777777889999999999876

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=1.2e-05  Score=68.04  Aligned_cols=318  Identities=14%  Similarity=0.146  Sum_probs=203.8

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHH--HHhhcCCCChHHHHHHHHHHHHHcCCChh
Q 043676            2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRF--VEFLMREDYPQLQYEAAWVLINIASGTSE   79 (446)
Q Consensus         2 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L--~~ll~~~~~~~~~~~a~~~L~~l~~~~~~   79 (446)
                      +.++.++.++..+|.++-..|.+.+..++..  +.....+..+.....+  ..+-...+ +-.|......+..+.+-+++
T Consensus       128 eilklildcIggeddeVAkAAiesikrialf--paaleaiFeSellDdlhlrnlaakcn-diaRvRVleLIieifSiSpe  204 (524)
T KOG4413|consen  128 EILKLILDCIGGEDDEVAKAAIESIKRIALF--PAALEAIFESELLDDLHLRNLAAKCN-DIARVRVLELIIEIFSISPE  204 (524)
T ss_pred             hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--HHHHHHhcccccCChHHHhHHHhhhh-hHHHHHHHHHHHHHHhcCHH
Confidence            4567888889999999999999999988876  4555566666555443  23333334 56788888899999998999


Q ss_pred             hHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccc-cchhHHHHHHHHHHH
Q 043676           80 NTNVVIDHGAVPIFVKLLSS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEH-AKLSMLRNATRTLSN  157 (446)
Q Consensus        80 ~~~~~~~~~~i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~  157 (446)
                      ........|.++.|..-|+. .+.-++.+++.....++.... .++.+.+.|.+..+.+++... .++--.-.++.....
T Consensus       205 saneckkSGLldlLeaElkGteDtLVianciElvteLaeteH-greflaQeglIdlicnIIsGadsdPfekfralmgfgk  283 (524)
T KOG4413|consen  205 SANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEH-GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGK  283 (524)
T ss_pred             HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhh-hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHH
Confidence            99999999999999988876 777888899999999985433 467888889999999888422 233333334444444


Q ss_pred             hhcCCC------CCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCc--HHHHHH-hcCCCCc
Q 043676          158 FCRGKP------EPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGV--CPRLVE-LLGHPSP  228 (446)
Q Consensus       158 l~~~~~------~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~--~~~l~~-ll~~~~~  228 (446)
                      +.....      ........-++.....++..+|+..+..++.+++.+..+... .+.+.+.|-  ...++. ....+..
T Consensus       284 ffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteG-adlllkTgppaaehllarafdqnah  362 (524)
T KOG4413|consen  284 FFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEG-ADLLLKTGPPAAEHLLARAFDQNAH  362 (524)
T ss_pred             HhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcch-hHHHhccCChHHHHHHHHHhccccc
Confidence            443321      111111233445556777889999999999999999877554 334555442  233333 3333334


Q ss_pred             cchhHHHHHHHHhhcCC---chh----------hHHHHh-------cCChHHHHHHhccCchHHHHHHHHHHHHHHhcCC
Q 043676          229 SVLTPALRTVGNIVTGD---DFQ----------TQCIIN-------HGAVPYLLDMLVHNHEEIIKKEISWIISNITAGN  288 (446)
Q Consensus       229 ~~~~~a~~~l~~l~~~~---~~~----------~~~~~~-------~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~  288 (446)
                      .-+..++.++.+++...   +++          +..+.+       ..-...+..+++.+ .++++-.+..++..++...
T Consensus       363 akqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQp-fpEihcAalktfTAiaaqP  441 (524)
T KOG4413|consen  363 AKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQP-FPEIHCAALKTFTAIAAQP  441 (524)
T ss_pred             chHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHHcCc
Confidence            45667888888887431   111          111111       12344567778877 8899999999999997653


Q ss_pred             HHHHHHHHHcCChHHHHHHHhcC---CcchHHHHHHHHHH
Q 043676          289 REQIQAVIDAGLIRPIVNLLQNA---EFDTKKEAAWAISN  325 (446)
Q Consensus       289 ~~~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~~  325 (446)
                      =.....+.+.+++..+.+--...   ..+.+.+++.++.+
T Consensus       442 WalkeifakeefieiVtDastEhaKaakdAkYeccKAiae  481 (524)
T KOG4413|consen  442 WALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAIAE  481 (524)
T ss_pred             HHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHHHH
Confidence            33333333556666554432221   12344455555543

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.65  E-value=4.2e-05  Score=64.24  Aligned_cols=270  Identities=13%  Similarity=0.140  Sum_probs=173.6

Q ss_pred             HHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhh-hhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHH
Q 043676          133 IPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQ-VRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVI  211 (446)
Q Consensus       133 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~  211 (446)
                      ..++.++ .+.++.++..|..-+..++... ...... ....++.+.+++...++  .+.+..++.|++.... ....++
T Consensus         6 ~elv~ll-~~~sP~v~~~AV~~l~~lt~~~-~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~-l~~~ll   80 (353)
T KOG2973|consen    6 VELVELL-HSLSPPVRKAAVEHLLGLTGRG-LQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE-LRKKLL   80 (353)
T ss_pred             HHHHHHh-ccCChHHHHHHHHHHhhccccc-hhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH-HHHHHH
Confidence            3566777 7889999999999998888772 222222 24567788888887776  7788999999998654 333455


Q ss_pred             HhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHH--h----cCChHHHHHHhccCchH-HHHHHHHHHHHHH
Q 043676          212 EAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCII--N----HGAVPYLLDMLVHNHEE-IIKKEISWIISNI  284 (446)
Q Consensus       212 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~----~~~~~~l~~~l~~~~~~-~v~~~a~~~l~~l  284 (446)
                      +. ++..++..+.++.+......+..+.|++...........  .    .+++........++.+. .--...+..++|+
T Consensus        81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl  159 (353)
T KOG2973|consen   81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL  159 (353)
T ss_pred             HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence            54 888899999888888999999999999986654443332  2    34455555555444221 1123456677787


Q ss_pred             hcCCHHHHHHHHHcCC--hHHHHHHHhcCCcchH-HHHHHHHHHhccCCCHHHHHHHHHc--CChHH-------------
Q 043676          285 TAGNREQIQAVIDAGL--IRPIVNLLQNAEFDTK-KEAAWAISNATSGGTQEQIKHLVRE--GCVKP-------------  346 (446)
Q Consensus       285 ~~~~~~~~~~~~~~~~--i~~L~~ll~~~~~~v~-~~a~~aL~~l~~~~~~~~~~~l~~~--~~i~~-------------  346 (446)
                      +. .+..+..+.....  ...+..+.. .+..+| ...+..|.|++...  ..-..++..  ++++.             
T Consensus       160 s~-~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~--~~h~~lL~e~~~lLp~iLlPlagpee~sE  235 (353)
T KOG2973|consen  160 SQ-FEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDA--KLHEVLLDESINLLPAILLPLAGPEELSE  235 (353)
T ss_pred             hh-hhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccc--hhHHHHhcchHHHHHHHHhhcCCccccCH
Confidence            54 3555566654443  333444433 344444 45666777766532  111111111  11111             


Q ss_pred             --------HHhccc-----CCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhh-cCCCHH
Q 043676          347 --------LCDLLL-----CSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQ-SHDNNE  412 (446)
Q Consensus       347 --------L~~ll~-----~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~-~~~~~~  412 (446)
                              =.+++.     .+++.++...+.+|..++.-..              .++.++.-|+-+.+..+. .-++++
T Consensus       236 Edm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~--------------GRe~lR~kgvYpilRElhk~e~ded  301 (353)
T KOG2973|consen  236 EDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA--------------GREVLRSKGVYPILRELHKWEEDED  301 (353)
T ss_pred             HHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH--------------hHHHHHhcCchHHHHHHhcCCCcHH
Confidence                    124442     4678899999999988775333              378999999999998885 446888


Q ss_pred             HHHHHHHHHHHhcC
Q 043676          413 IHEKSVKIFKTYWC  426 (446)
Q Consensus       413 v~~~a~~~l~~~~~  426 (446)
                      +.+...++.+-+..
T Consensus       302 ~~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  302 IREACEQVVQMLVR  315 (353)
T ss_pred             HHHHHHHHHHHHHh
Confidence            88887777776655

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.60  E-value=1e-05  Score=81.44  Aligned_cols=340  Identities=12%  Similarity=0.108  Sum_probs=199.4

Q ss_pred             HHHHhhcCCCHHHHHHHH-HHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcC-CChhhHHH
Q 043676            6 ALVAGVWSDDNSLQLEAT-TLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIAS-GTSENTNV   83 (446)
Q Consensus         6 ~l~~~l~s~~~~~~~~a~-~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~   83 (446)
                      .|...+.|.+|..|..++ |.|. +...-...+........+...+.++|.+.+ +-+|..|.+.++-+-+ ++...+..
T Consensus       822 ~l~~~~~s~nph~R~A~~VWLLs-~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~d-Ef~QDvAsrGlglVYelgd~~~k~~  899 (1702)
T KOG0915|consen  822 LLDTLLTSPNPHERQAGCVWLLS-LVQYLGQQPEVVLMLKEIQEAFSHLLSDND-EFSQDVASRGLGLVYELGDSSLKKS  899 (1702)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHH-HHHHhccCchhhhccHHHHHHHHHHhcccH-HHHHHHHhcCceEEEecCCchhHHH
Confidence            345566788998888654 5554 332211222223333456688889999888 7888888888766554 33444444


Q ss_pred             HHhcCChHHHHHhhCC-----CCHHH-------------HHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccch
Q 043676           84 VIDHGAVPIFVKLLSS-----PSDDV-------------REQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKL  145 (446)
Q Consensus        84 ~~~~~~i~~L~~~L~~-----~~~~v-------------~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~  145 (446)
                      +++ +.+..|..-=+.     .+.++             ....-.=|+|++++-.       +-..+-.++++-..+...
T Consensus       900 LV~-sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~-------qPdLVYKFM~LAnh~A~w  971 (1702)
T KOG0915|consen  900 LVD-SLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLG-------QPDLVYKFMQLANHNATW  971 (1702)
T ss_pred             HHH-HHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcC-------ChHHHHHHHHHhhhhchh
Confidence            332 223333321010     11111             1122233444542211       111234455555444455


Q ss_pred             hHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC
Q 043676          146 SMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH  225 (446)
Q Consensus       146 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~  225 (446)
                      .-+.-|+.-+..++..............+|.|.++=.+++..++.....+-..+...+.......+. .+++-|+.-+.+
T Consensus       972 nSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~ 1050 (1702)
T KOG0915|consen  972 NSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTS 1050 (1702)
T ss_pred             hcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccc
Confidence            6666777777877776544444455778888888888999999988777777777665555554444 788888888999


Q ss_pred             CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHH---HHHHHHHHhcC-----CHHHHHHHHH
Q 043676          226 PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKE---ISWIISNITAG-----NREQIQAVID  297 (446)
Q Consensus       226 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~---a~~~l~~l~~~-----~~~~~~~~~~  297 (446)
                      ..+++|+.+|.++..|..+.+.....-.-..+...+...+.+- .+.||+.   ++.+++.++..     +...-..+++
T Consensus      1051 kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~ 1129 (1702)
T KOG0915|consen 1051 KEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGAKGKEALD 1129 (1702)
T ss_pred             hhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHH
Confidence            9999999999999999987653221100012333444445444 5667765   45666666531     1111112222


Q ss_pred             cCChHHHHH--HHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHH
Q 043676          298 AGLIRPIVN--LLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTV  361 (446)
Q Consensus       298 ~~~i~~L~~--ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~  361 (446)
                       .++|.|+.  .+ +.-+++|..++..+..++.........++-+  .++.|.+..+.-++.+..+
T Consensus      1130 -~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~~--LIp~ll~~~s~lE~~vLnY 1191 (1702)
T KOG0915|consen 1130 -IILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFPK--LIPLLLNAYSELEPQVLNY 1191 (1702)
T ss_pred             -HHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhhH--HHHHHHHHccccchHHHHH
Confidence             34555543  22 4567899999999999998765544444333  6788888887777665544

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.58  E-value=2e-05  Score=76.33  Aligned_cols=383  Identities=15%  Similarity=0.111  Sum_probs=245.2

Q ss_pred             hHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676            4 FPALVAGVWSDD-NSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN   82 (446)
Q Consensus         4 i~~l~~~l~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~   82 (446)
                      +-.++..+..++ .+.+..++..+....-.. .+   ..++....+..-++.++.. +.++..++.-+++++..-+... 
T Consensus       199 lv~l~~~l~~~d~~~sr~sacglf~~~~~~~-~~---~~vk~elr~~~~~lc~d~~-~~Vr~~~a~~l~~~a~~~~~~~-  272 (759)
T KOG0211|consen  199 LVPLLKRLATGDWFQSRLSACGLFGKLYVSL-PD---DAVKRELRPIVQSLCQDDT-PMVRRAVASNLGNIAKVLESEI-  272 (759)
T ss_pred             HHHHHHHccchhhhhcchhhhhhhHHhccCC-Ch---HHHHHHHHHHHHhhccccc-hhhHHHHHhhhHHHHHHHHHHH-
Confidence            345566666545 566777878888776654 22   2344455677777777777 8999999999999987333332 


Q ss_pred             HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhC--CCh-HHHHHHHHcCChHHHHHHhccccchhHHHHHHHHH----
Q 043676           83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAG--DSP-RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTL----  155 (446)
Q Consensus        83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~--~~~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L----  155 (446)
                        ...+.++.+..+..+....+|+.|...+.++..  ..+ .....     ..+.+++.. .+.+..++.......    
T Consensus       273 --~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~-----~~~~l~~~~-~d~~~~v~~~~~~~~~~L~  344 (759)
T KOG0211|consen  273 --VKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKS-----LTESLVQAV-EDGSWRVSYMVADKFSELS  344 (759)
T ss_pred             --HHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhh-----hhHHHHHHh-cChhHHHHHHHhhhhhhHH
Confidence              235678999999999999999999988888873  222 22111     233444444 333333322222221    


Q ss_pred             -----------------------------------HHhhcCCC--CCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHH
Q 043676          156 -----------------------------------SNFCRGKP--EPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSY  198 (446)
Q Consensus       156 -----------------------------------~~l~~~~~--~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~  198 (446)
                                                         ..++...+  .........++|.+..+..+.+..++...+..+..
T Consensus       345 ~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~  424 (759)
T KOG0211|consen  345 SAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITG  424 (759)
T ss_pred             HHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccc
Confidence                                               11211110  01111223445666666667777777777766666


Q ss_pred             hccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHH
Q 043676          199 LADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEIS  278 (446)
Q Consensus       199 l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~  278 (446)
                      +....+...  . -....+.+...+++..+.++....+.+..+-..++...........++.+..+-... ..+++.+..
T Consensus       425 ~~p~~~k~~--t-i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail  500 (759)
T KOG0211|consen  425 LSPILPKER--T-ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAIL  500 (759)
T ss_pred             cCccCCcCc--C-ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccch-hHHHHHHHH
Confidence            653333100  1 115567777788888889999888877777665555555556667888888888877 889999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHH
Q 043676          279 WIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEI  358 (446)
Q Consensus       279 ~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~  358 (446)
                      +.+..++....   ..+.+...-+.+...+.+....+++.|+..+..++..-+.+.    .....++.+..+..+++...
T Consensus       501 ~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w----~~~~~i~k~L~~~~q~~y~~  573 (759)
T KOG0211|consen  501 EYIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEW----ARLEEIPKLLAMDLQDNYLV  573 (759)
T ss_pred             HHHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcch----hHHHhhHHHHHHhcCcccch
Confidence            98888865321   223332344444455656677899999998888876432111    11225777777777778888


Q ss_pred             HHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 043676          359 VTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCG  427 (446)
Q Consensus       359 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  427 (446)
                      |...+.++..+.....+.                +.....++.+.++..++.++|+-.+.+.+..+...
T Consensus       574 R~t~l~si~~la~v~g~e----------------i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~  626 (759)
T KOG0211|consen  574 RMTTLFSIHELAEVLGQE----------------ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKL  626 (759)
T ss_pred             hhHHHHHHHHHHHHhccH----------------HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhh
Confidence            999999999877765543                22334477888999999999998888888877543

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.55  E-value=1.5e-06  Score=63.15  Aligned_cols=115  Identities=15%  Similarity=0.093  Sum_probs=99.5

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHH
Q 043676           45 GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD  124 (446)
Q Consensus        45 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~  124 (446)
                      +.+..|+.-.+...+.+.+++...-|.|.+. +|.+-..+.+.++++.++..|..++..+.+.++..|+|+|.+. ....
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~-~n~~   93 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDK-TNAK   93 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccCh-HHHH
Confidence            4566677666665558999999999999998 8999999999999999999999999999999999999999655 4678


Q ss_pred             HHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 043676          125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK  162 (446)
Q Consensus       125 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  162 (446)
                      .+.+.++++.++..+ .++...+...++.++..|+...
T Consensus        94 ~I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~  130 (173)
T KOG4646|consen   94 FIREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGE  130 (173)
T ss_pred             HHHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcc
Confidence            899999999999999 7777788888999999888775

>TIGR02270 conserved hypothetical protein

Probab=98.55  E-value=3.4e-05  Score=70.26  Aligned_cols=244  Identities=17%  Similarity=0.045  Sum_probs=165.2

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHH
Q 043676           45 GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD  124 (446)
Q Consensus        45 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~  124 (446)
                      .+++.++..+.....+++...++.++.....  +         ..+..|+..|.++++.++..+..+|+.+-  .+    
T Consensus        54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~--~~----  116 (410)
T TIGR02270        54 AATELLVSALAEADEPGRVACAALALLAQED--A---------LDLRSVLAVLQAGPEGLCAGIQAALGWLG--GR----  116 (410)
T ss_pred             hHHHHHHHHHhhCCChhHHHHHHHHHhccCC--h---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCC--ch----
Confidence            4677888888543336777666655542221  1         13788999999999999999999988654  11    


Q ss_pred             HHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCc
Q 043676          125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTN  204 (446)
Q Consensus       125 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~  204 (446)
                           ...+.|+.++ ++.++.++..++.++...-.           ...+.+..++++.++.++..++.+++.+...  
T Consensus       117 -----~a~~~L~~~L-~~~~p~vR~aal~al~~r~~-----------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--  177 (410)
T TIGR02270       117 -----QAEPWLEPLL-AASEPPGRAIGLAALGAHRH-----------DPGPALEAALTHEDALVRAAALRALGELPRR--  177 (410)
T ss_pred             -----HHHHHHHHHh-cCCChHHHHHHHHHHHhhcc-----------ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--
Confidence                 1356777888 77788888888877766221           2356788888899999999999999886543  


Q ss_pred             HHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHH
Q 043676          205 DKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNI  284 (446)
Q Consensus       205 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l  284 (446)
                               ..++.|...+.+.++.||..|+..+..+..  +.         ....+....... .......+...+...
T Consensus       178 ---------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~---------A~~~l~~~~~~~-g~~~~~~l~~~lal~  236 (410)
T TIGR02270       178 ---------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RL---------AWGVCRRFQVLE-GGPHRQRLLVLLAVA  236 (410)
T ss_pred             ---------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--Hh---------HHHHHHHHHhcc-CccHHHHHHHHHHhC
Confidence                     445667777889999999999998866643  21         234455433333 333333333333332


Q ss_pred             hcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHH
Q 043676          285 TAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLI  364 (446)
Q Consensus       285 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~  364 (446)
                        +++         ..++.|..++++.  .++..++.+++.+-..   .         .++.|++.+.+..  +...|-+
T Consensus       237 --~~~---------~a~~~L~~ll~d~--~vr~~a~~AlG~lg~p---~---------av~~L~~~l~d~~--~aR~A~e  289 (410)
T TIGR02270       237 --GGP---------DAQAWLRELLQAA--ATRREALRAVGLVGDV---E---------AAPWCLEAMREPP--WARLAGE  289 (410)
T ss_pred             --Cch---------hHHHHHHHHhcCh--hhHHHHHHHHHHcCCc---c---------hHHHHHHHhcCcH--HHHHHHH
Confidence              222         3677788888764  4999999999987542   2         4677777776443  8888999


Q ss_pred             HHHHHHHh
Q 043676          365 GLENILKV  372 (446)
Q Consensus       365 ~l~~l~~~  372 (446)
                      ++..+.-.
T Consensus       290 A~~~ItG~  297 (410)
T TIGR02270       290 AFSLITGM  297 (410)
T ss_pred             HHHHhhCC
Confidence            99887653

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.54  E-value=9.7e-06  Score=72.85  Aligned_cols=312  Identities=16%  Similarity=0.173  Sum_probs=195.1

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCC-ChHHHHHHHHHHHHHcCCChhhHHHHH
Q 043676            7 LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRED-YPQLQYEAAWVLINIASGTSENTNVVI   85 (446)
Q Consensus         7 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~   85 (446)
                      +..++-+++..++-.+.+.++.+..+  ......+.+.++--.++.-|..++ ...-|++|++.+..+.... ...+ .+
T Consensus        30 i~~~lL~~~~~vraa~yRilRy~i~d--~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~-~~~~-~~  105 (371)
T PF14664_consen   30 IQCMLLSDSKEVRAAGYRILRYLISD--EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIK-KGPK-EI  105 (371)
T ss_pred             HHHHHCCCcHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhc-CCcc-cC
Confidence            33345566699999999999988776  566777777776666666665543 3567889999988887631 1111 23


Q ss_pred             hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC
Q 043676           86 DHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEP  165 (446)
Q Consensus        86 ~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  165 (446)
                      ..|++..++.+.+++++..+..|+.+++.++-.+|+   .+...|++..+++.+.+ +..++....+.++.++...+..+
T Consensus       106 ~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d-~~~~~~~~l~~~lL~lLd~p~tR  181 (371)
T PF14664_consen  106 PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALID-GSFSISESLLDTLLYLLDSPRTR  181 (371)
T ss_pred             CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHh-ccHhHHHHHHHHHHHHhCCcchh
Confidence            557899999999999999999999999999988775   67889999999999954 54458889999999999887555


Q ss_pred             ChhhhhhhHHHHHHhhcC-------CCH--hHHHHHHHHHHHhccCCcHHHHHHHH-hCcHHHHHHhcCCCCccchhHHH
Q 043676          166 PFDQVRPALPALAQLVHS-------NDE--DVLTYACWSLSYLADGTNDKIQAVIE-AGVCPRLVELLGHPSPSVLTPAL  235 (446)
Q Consensus       166 ~~~~~~~~~~~l~~ll~~-------~~~--~v~~~~~~~l~~l~~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~~~~~a~  235 (446)
                      .......-+..+..-+.+       ++.  +....+..++..+.+.-+.....-.. ...+..++..|..+++++|...+
T Consensus       182 ~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Il  261 (371)
T PF14664_consen  182 KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAIL  261 (371)
T ss_pred             hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHH
Confidence            544432223333322221       122  34555666666665544433221111 14678899999999999999998


Q ss_pred             HHHHHhhcCCch-hhHHHH------hcCCh---HHHHHHhccCchHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCChHHH
Q 043676          236 RTVGNIVTGDDF-QTQCII------NHGAV---PYLLDMLVHNHEEIIKKEISWIISNITAGN-REQIQAVIDAGLIRPI  304 (446)
Q Consensus       236 ~~l~~l~~~~~~-~~~~~~------~~~~~---~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~L  304 (446)
                      ..+..+..-... ......      ..+-+   ..+..-.... ....... ...=.++..+. .-....++++|+++.|
T Consensus       262 dll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~-~~~~~~~-~~~~~~l~~~y~aLll~ili~~gL~~~L  339 (371)
T PF14664_consen  262 DLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEA-KSILPHR-SSKRPNLVNHYLALLLAILIEAGLLEAL  339 (371)
T ss_pred             HHHHHHHCCCCCCcccchhhcccccccccccchhhhccccccc-ccccCcc-ccccccHHHHHHHHHHHHHHHcChHHHH
Confidence            888888653321 111111      11111   0000000000 0000000 00001111110 1122346689999999


Q ss_pred             HHHHhcC-CcchHHHHHHHHHHhcc
Q 043676          305 VNLLQNA-EFDTKKEAAWAISNATS  328 (446)
Q Consensus       305 ~~ll~~~-~~~v~~~a~~aL~~l~~  328 (446)
                      +++..+. ++.+..+|...|+.+..
T Consensus       340 ~~li~~~~d~~l~~KAtlLL~elL~  364 (371)
T PF14664_consen  340 VELIESSEDSSLSRKATLLLGELLH  364 (371)
T ss_pred             HHHHhcCCCchHHHHHHHHHHHHHH
Confidence            9999987 88899999888887653

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.51  E-value=5.1e-05  Score=68.68  Aligned_cols=250  Identities=27%  Similarity=0.310  Sum_probs=177.8

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676            3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN   82 (446)
Q Consensus         3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~   82 (446)
                      .++.+.+.+.+.++.++..+++.+..+...            ..++.+..++.+.+ +.+|..|+.+|+.+-.  +    
T Consensus        44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~--~----  104 (335)
T COG1413          44 AADELLKLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELLSDED-PRVRDAAADALGELGD--P----  104 (335)
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHhcCCC-HHHHHHHHHHHHccCC--h----
Confidence            567788889999999999999886654322            46999999999999 8999999999988865  2    


Q ss_pred             HHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcccc-----------chhHHHH
Q 043676           83 VVIDHGAVPIFVKLLS-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHA-----------KLSMLRN  150 (446)
Q Consensus        83 ~~~~~~~i~~L~~~L~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-----------~~~~~~~  150 (446)
                           ..++.++.++. +++..+|..+.++|+.+-...           .+.+++..+.+..           ...++..
T Consensus       105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~  168 (335)
T COG1413         105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRAA  168 (335)
T ss_pred             -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence                 35788888888 599999999999999876221           2567777773322           0134555


Q ss_pred             HHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccc
Q 043676          151 ATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSV  230 (446)
Q Consensus       151 a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~  230 (446)
                      +...+..+-.          ...++.+...+.+.+..++..+..+++.+....         ..+.+.+...+.+++..+
T Consensus       169 a~~~l~~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~v  229 (335)
T COG1413         169 AAEALGELGD----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEV  229 (335)
T ss_pred             HHHHHHHcCC----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHH
Confidence            6555555533          245678888888888899999999998877654         245577888888888889


Q ss_pred             hhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc
Q 043676          231 LTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQN  310 (446)
Q Consensus       231 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~  310 (446)
                      +..++..++.+-...           ....+...+... +..++..+...+...  ...         .....+...+.+
T Consensus       230 r~~~~~~l~~~~~~~-----------~~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~~---------~~~~~l~~~~~~  286 (335)
T COG1413         230 RKAALLALGEIGDEE-----------AVDALAKALEDE-DVILALLAAAALGAL--DLA---------EAALPLLLLLID  286 (335)
T ss_pred             HHHHHHHhcccCcch-----------hHHHHHHHHhcc-chHHHHHHHHHhccc--Cch---------hhHHHHHHHhhc
Confidence            998888887665422           356677777777 666665555544411  111         234456666666


Q ss_pred             CCcchHHHHHHHHHHhccC
Q 043676          311 AEFDTKKEAAWAISNATSG  329 (446)
Q Consensus       311 ~~~~v~~~a~~aL~~l~~~  329 (446)
                      .+..++..+..++......
T Consensus       287 ~~~~~~~~~~~~l~~~~~~  305 (335)
T COG1413         287 EANAVRLEAALALGQIGQE  305 (335)
T ss_pred             chhhHHHHHHHHHHhhccc
Confidence            7777787888777777653

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.50  E-value=0.00025  Score=66.35  Aligned_cols=302  Identities=14%  Similarity=0.093  Sum_probs=181.5

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcc-ccchhHHHHHHHHHHHhhcCCCCCChh
Q 043676           90 VPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE-HAKLSMLRNATRTLSNFCRGKPEPPFD  168 (446)
Q Consensus        90 i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~  168 (446)
                      +..+.+=|.+.++.....|+.+++|+-+.  +.++.+.     ..+-++|.. +...-++..++.+|..|.+..  .+..
T Consensus       113 in~iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~s--pDl~  183 (938)
T KOG1077|consen  113 INSIKNDLSSRNPTFVCLALHCIANIGSR--EMAEAFA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKS--PDLV  183 (938)
T ss_pred             HHHHHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHhh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcC--cccc
Confidence            34555556667888889999999998632  2333332     223355533 234567888888888888774  4455


Q ss_pred             hhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-------------CCccchhHHH
Q 043676          169 QVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH-------------PSPSVLTPAL  235 (446)
Q Consensus       169 ~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-------------~~~~~~~~a~  235 (446)
                      ...+....++.+|.+.+..+...+...+..++...++.....+. -.+..|..+...             +.|-+....+
T Consensus       184 ~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~  262 (938)
T KOG1077|consen  184 NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLL  262 (938)
T ss_pred             ChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHHHH
Confidence            55688899999999999999999999999999877765542211 122222222211             3345666677


Q ss_pred             HHHHHhhcCCc-hhhHHHHhcCChHHHHHHhccCc------hHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH
Q 043676          236 RTVGNIVTGDD-FQTQCIINHGAVPYLLDMLVHNH------EEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLL  308 (446)
Q Consensus       236 ~~l~~l~~~~~-~~~~~~~~~~~~~~l~~~l~~~~------~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll  308 (446)
                      +.|.++-...+ ..+..+.  .+++.++...+.+.      ....+...++-..+++.+-...-..+.  ..+..|-+++
T Consensus       263 rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fl  338 (938)
T KOG1077|consen  263 RLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFL  338 (938)
T ss_pred             HHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHh
Confidence            77776633222 2222222  24455555544221      112333344444444442111112222  3677888999


Q ss_pred             hcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhccc-CCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccc
Q 043676          309 QNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLL-CSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVN  387 (446)
Q Consensus       309 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  387 (446)
                      .+.++.+|.-|+..++.++...  .....+..  -.+.++..|+ +.|..++..+++.|+.+++.+..            
T Consensus       339 s~rE~NiRYLaLEsm~~L~ss~--~s~davK~--h~d~Ii~sLkterDvSirrravDLLY~mcD~~Na------------  402 (938)
T KOG1077|consen  339 SHRETNIRYLALESMCKLASSE--FSIDAVKK--HQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNA------------  402 (938)
T ss_pred             hcccccchhhhHHHHHHHHhcc--chHHHHHH--HHHHHHHHhccccchHHHHHHHHHHHHHhchhhH------------
Confidence            9999999999999999998753  22222222  2677888887 78999999999999997765432            


Q ss_pred             hHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 043676          388 QYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYW  425 (446)
Q Consensus       388 ~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  425 (446)
                         +.+. .+.++.|.....+-.+++.-++.-+-++|-
T Consensus       403 ---k~IV-~elLqYL~tAd~sireeivlKvAILaEKyA  436 (938)
T KOG1077|consen  403 ---KQIV-AELLQYLETADYSIREEIVLKVAILAEKYA  436 (938)
T ss_pred             ---HHHH-HHHHHHHhhcchHHHHHHHHHHHHHHHHhc
Confidence               3333 344555555444444555555554545543

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.46  E-value=5.4e-05  Score=63.79  Aligned_cols=239  Identities=16%  Similarity=0.158  Sum_probs=152.1

Q ss_pred             HHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC--CCccchhHHHHHHHHhhcCCchhhHH
Q 043676          174 LPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLTPALRTVGNIVTGDDFQTQC  251 (446)
Q Consensus       174 ~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~--~~~~~~~~a~~~l~~l~~~~~~~~~~  251 (446)
                      ...|-.+++.-++-.+.-|.+|+.++......+...-.+...-..++.++++  +...++...+.+++.++. ++...+.
T Consensus       151 leyLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqd  229 (432)
T COG5231         151 LEYLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQD  229 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHH
Confidence            3444455555577788889999999887655444434444455667777776  567788899999998886 3333322


Q ss_pred             HH-hcCChHHHHHHhccCchHHHHHHHHHHHHHHhc-CCHHHHHHHH-HcCChHHHHHHHhcC--CcchHHHHHHHHHHh
Q 043676          252 II-NHGAVPYLLDMLVHNHEEIIKKEISWIISNITA-GNREQIQAVI-DAGLIRPIVNLLQNA--EFDTKKEAAWAISNA  326 (446)
Q Consensus       252 ~~-~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~-~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l  326 (446)
                      +- -...+..++.+.+......+-.-++.++.|++. .....+..+. ..++.+...-+...+  |.+++...-..=..+
T Consensus       230 i~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l  309 (432)
T COG5231         230 IDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRL  309 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence            21 123455666666654356777788999999987 3334444444 333555544444433  444432222111111


Q ss_pred             ccC---------------------C--------CHHHHHHHHHcC--ChHHHHhcccCCCHH-HHHHHHHHHHHHHHhhh
Q 043676          327 TSG---------------------G--------TQEQIKHLVREG--CVKPLCDLLLCSDPE-IVTVCLIGLENILKVGE  374 (446)
Q Consensus       327 ~~~---------------------~--------~~~~~~~l~~~~--~i~~L~~ll~~~~~~-~~~~~~~~l~~l~~~~~  374 (446)
                      ...                     +        -.++...+.+.+  .+..|.++++..++. ....|+.-+..+++..+
T Consensus       310 ~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~P  389 (432)
T COG5231         310 VQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASP  389 (432)
T ss_pred             HhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCc
Confidence            110                     0        112344444432  477788888877766 45567777777887777


Q ss_pred             hhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 043676          375 AERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWC  426 (446)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  426 (446)
                      ..             ...+...|+-+.+.+|++|++++|+-.|.++++.+..
T Consensus       390 E~-------------~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         390 EI-------------NAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             hH-------------HHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence            64             5889999999999999999999999999988887654

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.43  E-value=2.2e-05  Score=66.04  Aligned_cols=262  Identities=17%  Similarity=0.111  Sum_probs=162.9

Q ss_pred             HhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHH-hcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChHHHHHHHH
Q 043676           52 EFLMREDYPQLQYEAAWVLINIASGTSENTNVVI-DHGAVPIFVKLLSS--PSDDVREQAVWALGNVAGDSPRCRDLVLS  128 (446)
Q Consensus        52 ~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~~L~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~  128 (446)
                      ++++.-+ +-.+.-|++|+.++.. .++.|...- +.-.-..+...+++  +...++.+.+.+++.++. ++.+.+.+-+
T Consensus       156 kl~Q~i~-~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~K  232 (432)
T COG5231         156 KLSQLID-FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDIDK  232 (432)
T ss_pred             HHHHHHH-HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHHH
Confidence            4445555 6688999999999998 777776554 44455667777776  567899999999999984 4445433222


Q ss_pred             -cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhh--hhh-hHHHHHHhhcC--CCHhHHHHHHHHHHHhccC
Q 043676          129 -QGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQ--VRP-ALPALAQLVHS--NDEDVLTYACWSLSYLADG  202 (446)
Q Consensus       129 -~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~-~~~~l~~ll~~--~~~~v~~~~~~~l~~l~~~  202 (446)
                       ...+..++++......+.+.+-++..+.|++...|...+..  ..+ +.+..-.+++.  .|++++...-..=..+...
T Consensus       233 ~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~  312 (432)
T COG5231         233 MDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQN  312 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Confidence             22456667777556678899999999999998554332221  223 33443333332  2666665544333333222


Q ss_pred             CcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHH--hcCChHHHHHHhccCchHHHHHHHHHH
Q 043676          203 TNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCII--NHGAVPYLLDMLVHNHEEIIKKEISWI  280 (446)
Q Consensus       203 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~v~~~a~~~  280 (446)
                      .....  ..+ ..+.-|-.-+-.-+|.-+..-.|.         .+.+.+.  +..++..+.++++...+...-.-|+.-
T Consensus       313 ~k~l~--~fD-~Y~~ELdsg~l~wSp~H~~~dFWs---------~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~D  380 (432)
T COG5231         313 TKKLC--IFD-NYLNELDSGRLEWSPYHHKKDFWS---------TNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSD  380 (432)
T ss_pred             hhhhh--HHH-HHHHHHhhCcccCCCcccccCchh---------hhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhh
Confidence            21111  010 111112111112233333333331         2223333  224678888999877233244557777


Q ss_pred             HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhcc
Q 043676          281 ISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATS  328 (446)
Q Consensus       281 l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  328 (446)
                      +..+.+..|+.+..+.+.|+=..+++++++++++++.+|+.++..+..
T Consensus       381 i~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         381 IFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             HHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence            888888889999999999999999999999999999999999987754

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.40  E-value=0.00012  Score=74.03  Aligned_cols=341  Identities=16%  Similarity=0.174  Sum_probs=192.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHH
Q 043676           16 NSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVK   95 (446)
Q Consensus        16 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~   95 (446)
                      ..-+.-|+.-+..++... .+..+... ..++|.|.+.=-+|+ ..+|.....+...+..++....+... ..+++-|+.
T Consensus       971 wnSk~GaAfGf~~i~~~a-~~kl~p~l-~kLIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~ 1046 (1702)
T KOG0915|consen  971 WNSKKGAAFGFGAIAKQA-GEKLEPYL-KKLIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYL-NEILDELLV 1046 (1702)
T ss_pred             hhcccchhhchHHHHHHH-HHhhhhHH-HHhhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHH
Confidence            445555666666665543 12222122 246777777766777 88988888887778775455555544 356788888


Q ss_pred             hhCCCCHHHHHHHHHHHHHhhCCChH--HHHHHHHcCChHHHHHHhccccchhHHHH---HHHHHHHhhcCC-CCCChhh
Q 043676           96 LLSSPSDDVREQAVWALGNVAGDSPR--CRDLVLSQGALIPLLAELNEHAKLSMLRN---ATRTLSNFCRGK-PEPPFDQ  169 (446)
Q Consensus        96 ~L~~~~~~v~~~a~~~l~~l~~~~~~--~~~~~~~~~~i~~l~~~l~~~~~~~~~~~---a~~~L~~l~~~~-~~~~~~~  169 (446)
                      -+.+....+|+.++.+|..+..+.+.  ..+.+.+  ....+.+.+ ++-.+.+|..   ++.+|+.++-.. +...-..
T Consensus      1047 ~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpe--lw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~ 1123 (1702)
T KOG0915|consen 1047 NLTSKEWRVREASCLALADLLQGRPFDQVKEKLPE--LWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAK 1123 (1702)
T ss_pred             hccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCccc
Confidence            88888999999999999999977653  2223222  334444444 3444555554   445555555432 1122222


Q ss_pred             hhhhHHHHHHhhc-----CCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhH-HHHHHHHhh-
Q 043676          170 VRPALPALAQLVH-----SNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTP-ALRTVGNIV-  242 (446)
Q Consensus       170 ~~~~~~~l~~ll~-----~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~-a~~~l~~l~-  242 (446)
                      -..++..+..++-     +.-+++|..++.++..++...+...... -..+++.|+.....-++.+... +++. .+.. 
T Consensus      1124 ~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~-~~~LIp~ll~~~s~lE~~vLnYls~r~-~~~e~ 1201 (1702)
T KOG0915|consen 1124 GKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPH-FPKLIPLLLNAYSELEPQVLNYLSLRL-INIET 1201 (1702)
T ss_pred             HHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcch-hhHHHHHHHHHccccchHHHHHHHHhh-hhhHH
Confidence            2333444443332     4568999999999999998877655432 2367778887777655544332 2322 1111 


Q ss_pred             -----------cCCch---------hhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChH
Q 043676          243 -----------TGDDF---------QTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIR  302 (446)
Q Consensus       243 -----------~~~~~---------~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~  302 (446)
                                 ...|.         +.+.-+-...+|.+.++++.+-.-..|..++..+.-++..-........ -..+.
T Consensus      1202 ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~s-gKll~ 1280 (1702)
T KOG0915|consen 1202 EALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYS-GKLLR 1280 (1702)
T ss_pred             HHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcch-hHHHH
Confidence                       11110         0000001124455555555443344455555555555431000000000 12466


Q ss_pred             HHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHH
Q 043676          303 PIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILK  371 (446)
Q Consensus       303 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~  371 (446)
                      .++..+++.++.+++..+.|.+.++....+++...+++    ..+..++...++ ....++..+.++..
T Consensus      1281 al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie----~~l~~~l~k~es-~~siscatis~Ian 1344 (1702)
T KOG0915|consen 1281 ALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIE----TLLADLLGKDES-LKSISCATISNIAN 1344 (1702)
T ss_pred             HHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHH----HHHHHHhccCCC-ccchhHHHHHHHHH
Confidence            67777778899999999999999999888888877554    223334433332 22444555554433

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=98.39  E-value=0.00016  Score=65.97  Aligned_cols=350  Identities=12%  Similarity=0.111  Sum_probs=197.5

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCC---ChHHHHHHHHHHHHHcCCChhhHHHHHhcCCh
Q 043676           14 DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRED---YPQLQYEAAWVLINIASGTSENTNVVIDHGAV   90 (446)
Q Consensus        14 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i   90 (446)
                      +++-.|++|+..|..+-..      +.+.    ...+++.+..+.   +..-....+++...+...+++.+..+     .
T Consensus       202 ~~~isqYHalGlLyq~kr~------dkma----~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~-----r  266 (898)
T COG5240         202 GNPISQYHALGLLYQSKRT------DKMA----QLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQL-----R  266 (898)
T ss_pred             CChHHHHHHHHHHHHHhcc------cHHH----HHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHH-----H
Confidence            4577788888888764332      2233    233444444333   12223333455555555555555444     3


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhh
Q 043676           91 PIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQV  170 (446)
Q Consensus        91 ~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  170 (446)
                      +.|-..+++.-+.+.-.+++.++.++..+-.  ....+ ..+..|-.+| +++....+-.|+++|..++...|...... 
T Consensus       267 pfL~~wls~k~emV~lE~Ar~v~~~~~~nv~--~~~~~-~~vs~L~~fL-~s~rv~~rFsA~Riln~lam~~P~kv~vc-  341 (898)
T COG5240         267 PFLNSWLSDKFEMVFLEAARAVCALSEENVG--SQFVD-QTVSSLRTFL-KSTRVVLRFSAMRILNQLAMKYPQKVSVC-  341 (898)
T ss_pred             HHHHHHhcCcchhhhHHHHHHHHHHHHhccC--HHHHH-HHHHHHHHHH-hcchHHHHHHHHHHHHHHHhhCCceeeec-
Confidence            6666677777788888888888888754311  11111 1344555555 77788899999999999999876543322 


Q ss_pred             hhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhH
Q 043676          171 RPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQ  250 (446)
Q Consensus       171 ~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~  250 (446)
                         -+.+-.++.+.+..+..+|+..|..-.  .++.+..++     ..+..++.+-+...+.-+..++..|+...|....
T Consensus       342 ---N~evEsLIsd~Nr~IstyAITtLLKTG--t~e~idrLv-----~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~  411 (898)
T COG5240         342 ---NKEVESLISDENRTISTYAITTLLKTG--TEETIDRLV-----NLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKL  411 (898)
T ss_pred             ---ChhHHHHhhcccccchHHHHHHHHHcC--chhhHHHHH-----HHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHH
Confidence               244556667777777777776665432  333343233     3333333333333344444444444443333222


Q ss_pred             HHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCC
Q 043676          251 CIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGG  330 (446)
Q Consensus       251 ~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  330 (446)
                      .     .+..|...|......+.+..++.+++.+....|+...     .++..|+..+.+..  .-+.+...|+-+...+
T Consensus       412 s-----~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDce--y~~I~vrIL~iLG~Eg  479 (898)
T COG5240         412 S-----YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDCE--YHQITVRILGILGREG  479 (898)
T ss_pred             H-----HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhcc--hhHHHHHHHHHhcccC
Confidence            2     3455666665544788899999999988876666544     34567777776543  3344555555554432


Q ss_pred             CHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCC
Q 043676          331 TQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDN  410 (446)
Q Consensus       331 ~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~  410 (446)
                      ....-    ....+..+..-+--.+.-++..|+.+|.++.-..+..                +...-....+.+.+++.+
T Consensus       480 P~a~~----P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~----------------~~~~sv~~~lkRclnD~D  539 (898)
T COG5240         480 PRAKT----PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV----------------VSPQSVENALKRCLNDQD  539 (898)
T ss_pred             CCCCC----cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc----------------ccHHHHHHHHHHHhhccc
Confidence            11000    0001222333223346678888888888754322211                111112345778899999


Q ss_pred             HHHHHHHHHHHHHhc
Q 043676          411 NEIHEKSVKIFKTYW  425 (446)
Q Consensus       411 ~~v~~~a~~~l~~~~  425 (446)
                      .+++++|.-.++.+-
T Consensus       540 deVRdrAsf~l~~~~  554 (898)
T COG5240         540 DEVRDRASFLLRNMR  554 (898)
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999998887654

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.38  E-value=2.9e-05  Score=71.72  Aligned_cols=219  Identities=12%  Similarity=0.118  Sum_probs=147.2

Q ss_pred             HHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCc-----HHHHH
Q 043676          135 LLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTN-----DKIQA  209 (446)
Q Consensus       135 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~-----~~~~~  209 (446)
                      +..+. .+.+..++.+|+..|..|....     ....-+....+.++.+++..+|..|+..+.-.....+     +....
T Consensus       203 l~~~~-~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~  276 (823)
T KOG2259|consen  203 LIYLE-HDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE  276 (823)
T ss_pred             HHHHh-cCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence            55555 6778888888888888887642     2224466788899999999999999777655543321     11111


Q ss_pred             HHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHH-HHHHH--hc
Q 043676          210 VIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISW-IISNI--TA  286 (446)
Q Consensus       210 ~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~-~l~~l--~~  286 (446)
                      -..-.++..+...+.+.+..+|..|+..++.+-.-+++.....++..++..+-..       ....+... ..++-  ++
T Consensus       277 kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRk-------r~ahkrpk~l~s~GewSs  349 (823)
T KOG2259|consen  277 KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRK-------RTAHKRPKALYSSGEWSS  349 (823)
T ss_pred             hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhh-------hhcccchHHHHhcCCccc
Confidence            1122667788889999999999999999998887666655555544443322211       11111111 11111  11


Q ss_pred             -----------CCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCC
Q 043676          287 -----------GNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSD  355 (446)
Q Consensus       287 -----------~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~  355 (446)
                                 ...+.-..++.+|.-..++.-+.++-.+||..|...++.++.. .+.....     .+..|++++.+..
T Consensus       350 Gk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s-sP~FA~~-----aldfLvDMfNDE~  423 (823)
T KOG2259|consen  350 GKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS-SPGFAVR-----ALDFLVDMFNDEI  423 (823)
T ss_pred             CccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC-CCCcHHH-----HHHHHHHHhccHH
Confidence                       1112234567778778888888888889999999999999886 3444333     5888999999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 043676          356 PEIVTVCLIGLENILKV  372 (446)
Q Consensus       356 ~~~~~~~~~~l~~l~~~  372 (446)
                      ..++..|+.+|..+...
T Consensus       424 ~~VRL~ai~aL~~Is~~  440 (823)
T KOG2259|consen  424 EVVRLKAIFALTMISVH  440 (823)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999988765

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.38  E-value=8.8e-05  Score=67.12  Aligned_cols=248  Identities=24%  Similarity=0.305  Sum_probs=173.2

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHH
Q 043676           45 GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD  124 (446)
Q Consensus        45 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~  124 (446)
                      ..++.+.+.+.+++ ..++..+++.++.+..           ...++.+..++.+.++.+|..+..+|+.+-  .+.   
T Consensus        43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~~---  105 (335)
T COG1413          43 EAADELLKLLEDED-LLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--DPE---  105 (335)
T ss_pred             hhHHHHHHHHcCCC-HHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC--Chh---
Confidence            46888999999997 8999999999877765           245899999999999999999999888764  222   


Q ss_pred             HHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCH------------hHHHHH
Q 043676          125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDE------------DVLTYA  192 (446)
Q Consensus       125 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~------------~v~~~~  192 (446)
                            .++.++..+..+.+..++..+.++|..+-...          .+..++..+.+...            .++..+
T Consensus       106 ------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a  169 (335)
T COG1413         106 ------AVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAA  169 (335)
T ss_pred             ------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence                  46788898855789999999999999886542          35666677766542            344444


Q ss_pred             HHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHH
Q 043676          193 CWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEI  272 (446)
Q Consensus       193 ~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  272 (446)
                      ...++.+-.           ...++.+...+.+.+..+|..|...++.+....         ..+.+.+...+.++ +..
T Consensus       170 ~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~  228 (335)
T COG1413         170 AEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE  228 (335)
T ss_pred             HHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence            444443321           245677788888888888999999888887754         23456777888888 888


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhccc
Q 043676          273 IKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLL  352 (446)
Q Consensus       273 v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~  352 (446)
                      +|..++.+++.+-.  .         ..++.+...+.+.+..++..+..++...-.   .         .....+...+.
T Consensus       229 vr~~~~~~l~~~~~--~---------~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~---~---------~~~~~l~~~~~  285 (335)
T COG1413         229 VRKAALLALGEIGD--E---------EAVDALAKALEDEDVILALLAAAALGALDL---A---------EAALPLLLLLI  285 (335)
T ss_pred             HHHHHHHHhcccCc--c---------hhHHHHHHHHhccchHHHHHHHHHhcccCc---h---------hhHHHHHHHhh
Confidence            99988888887732  2         245667777777777766666655551110   0         12334445555


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 043676          353 CSDPEIVTVCLIGLENI  369 (446)
Q Consensus       353 ~~~~~~~~~~~~~l~~l  369 (446)
                      +.+..++..+...+..+
T Consensus       286 ~~~~~~~~~~~~~l~~~  302 (335)
T COG1413         286 DEANAVRLEAALALGQI  302 (335)
T ss_pred             cchhhHHHHHHHHHHhh
Confidence            56666666655555543

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.37  E-value=1.3e-05  Score=73.89  Aligned_cols=254  Identities=15%  Similarity=0.115  Sum_probs=164.3

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC------CC
Q 043676           92 IFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKP------EP  165 (446)
Q Consensus        92 ~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~------~~  165 (446)
                      -+..+..+.+..++..|+..+..+..+.. ....     .....+..+ .+.+..++..|+..++......|      ..
T Consensus       202 ~l~~~~~~~D~~Vrt~A~eglL~L~eg~k-L~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~  274 (823)
T KOG2259|consen  202 GLIYLEHDQDFRVRTHAVEGLLALSEGFK-LSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERESE  274 (823)
T ss_pred             HHHHHhcCCCcchHHHHHHHHHhhccccc-ccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence            36666777778888888888777775322 2222     244566777 67788899888766655544331      22


Q ss_pred             ChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhc--
Q 043676          166 PFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVT--  243 (446)
Q Consensus       166 ~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~--  243 (446)
                      ........+..+...+++.+..+|..+..+++.+-..+.+......+..++..+-..-   ...-+...+..=+..++  
T Consensus       275 e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr---~ahkrpk~l~s~GewSsGk  351 (823)
T KOG2259|consen  275 EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKR---TAHKRPKALYSSGEWSSGK  351 (823)
T ss_pred             hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhh---hcccchHHHHhcCCcccCc
Confidence            2333466778888889999999999999999988766665555444433333221110   00001111111111111  


Q ss_pred             ---------CCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcc
Q 043676          244 ---------GDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFD  314 (446)
Q Consensus       244 ---------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~  314 (446)
                               ..+.....++.+|.-..++.-+.++ -.+||.+|+..++.++..+|....     ..+..|+++++++...
T Consensus       352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~  425 (823)
T KOG2259|consen  352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEV  425 (823)
T ss_pred             cccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHH
Confidence                     1223344577888888999999888 899999999999999876554322     3677899999999999


Q ss_pred             hHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHH
Q 043676          315 TKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLEN  368 (446)
Q Consensus       315 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~  368 (446)
                      ||..|+.+|..++.+..       +++..++.+.+.|.+.+++++......|.+
T Consensus       426 VRL~ai~aL~~Is~~l~-------i~eeql~~il~~L~D~s~dvRe~l~elL~~  472 (823)
T KOG2259|consen  426 VRLKAIFALTMISVHLA-------IREEQLRQILESLEDRSVDVREALRELLKN  472 (823)
T ss_pred             HHHHHHHHHHHHHHHhe-------ecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            99999999999876421       222346667777777777777766555554

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=98.36  E-value=0.0013  Score=63.61  Aligned_cols=140  Identities=18%  Similarity=0.162  Sum_probs=103.3

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV   83 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   83 (446)
                      +|.+++...+.|.+++...-..+...+...  + ...+.   .++.+.+=+++++ +.+|..|++.++.+-.  ++... 
T Consensus        57 f~dViK~~~trd~ElKrL~ylYl~~yak~~--P-~~~lL---avNti~kDl~d~N-~~iR~~AlR~ls~l~~--~el~~-  126 (757)
T COG5096          57 FPDVIKNVATRDVELKRLLYLYLERYAKLK--P-ELALL---AVNTIQKDLQDPN-EEIRGFALRTLSLLRV--KELLG-  126 (757)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHhccC--H-HHHHH---HHHHHHhhccCCC-HHHHHHHHHHHHhcCh--HHHHH-
Confidence            345566666677777777777777666653  2 12222   3677778888899 8999999999988754  33322 


Q ss_pred             HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676           84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG  161 (446)
Q Consensus        84 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  161 (446)
                          .+++.+.+++.++++.||..|+.++.++-+-++.   ...+.|.+..+..++ .+.++.+..+|+.+|..+...
T Consensus       127 ----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~---l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         127 ----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD---LYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             ----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh---hhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence                3478899999999999999999999999866543   455666666666666 789999999999999988665

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.35  E-value=3.3e-05  Score=76.22  Aligned_cols=259  Identities=16%  Similarity=0.143  Sum_probs=169.8

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCC---ChhhHHHHHhcCChH
Q 043676           15 DNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASG---TSENTNVVIDHGAVP   91 (446)
Q Consensus        15 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~   91 (446)
                      ..+.+..|+..|..++....    .+..-..++|.++.++.++. .++|..|+.+|..+...   -+..-..+...-++|
T Consensus       436 ~~~tK~~ALeLl~~lS~~i~----de~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP  510 (1431)
T KOG1240|consen  436 TIQTKLAALELLQELSTYID----DEVKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPPSDANIFPEYLFP  510 (1431)
T ss_pred             cchhHHHHHHHHHHHhhhcc----hHHHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhh
Confidence            35678889999988766531    12222368999999999999 89999999998887751   122222333345677


Q ss_pred             HHHHhhCC-CCHHHHHHHHHHHHHhhCCChHHH---HHHHHc------------------------CChHHHHHHhcccc
Q 043676           92 IFVKLLSS-PSDDVREQAVWALGNVAGDSPRCR---DLVLSQ------------------------GALIPLLAELNEHA  143 (446)
Q Consensus        92 ~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~~~---~~~~~~------------------------~~i~~l~~~l~~~~  143 (446)
                      .|-.++.+ ....+|..-+..|..++.......   ..+...                        ..+...+.-|..++
T Consensus       511 ~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~  590 (1431)
T KOG1240|consen  511 HLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDS  590 (1431)
T ss_pred             hhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCC
Confidence            78788877 445566665666666552211110   000000                        01222233232455


Q ss_pred             chhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc
Q 043676          144 KLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELL  223 (446)
Q Consensus       144 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll  223 (446)
                      ++-+++..+..+.-||...  .......-+++.|+.+|++.|+.+|..-...|..++..-..+   -++..++|.|.+-|
T Consensus       591 ~~~Vkr~Lle~i~~LC~FF--Gk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r---s~seyllPLl~Q~l  665 (1431)
T KOG1240|consen  591 PPIVKRALLESIIPLCVFF--GKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR---SVSEYLLPLLQQGL  665 (1431)
T ss_pred             chHHHHHHHHHHHHHHHHh--hhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee---eHHHHHHHHHHHhc
Confidence            5667777777777776542  112223456788999999999999988888887666332211   13447889999999


Q ss_pred             CCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc
Q 043676          224 GHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA  286 (446)
Q Consensus       224 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~  286 (446)
                      .+.++.|...|++++.-|+...--....+.  .+++....+|-++ +.-+|..++..|.....
T Consensus       666 tD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  666 TDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHP-NLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             cCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence            999999999999999999874432222222  3677788888999 99999999998888764

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.34  E-value=1.2e-06  Score=51.25  Aligned_cols=40  Identities=45%  Similarity=0.905  Sum_probs=38.0

Q ss_pred             ChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 043676           77 TSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVA  116 (446)
Q Consensus        77 ~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~  116 (446)
                      +++++..+++.|+++.|+++|+++++++++.|+|+|+||+
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            4688999999999999999999999999999999999997

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.32  E-value=8.4e-05  Score=73.46  Aligned_cols=295  Identities=15%  Similarity=0.113  Sum_probs=187.1

Q ss_pred             hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC----CC
Q 043676           90 VPIFVKLLSS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK----PE  164 (446)
Q Consensus        90 i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~----~~  164 (446)
                      ++.+...++. .....+..|+..|..++.....   ...-..++|.++.++ .++..+++..|+.+|..+...-    +.
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~-~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~  499 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLL-MDSEADVRATALETLTELLALVRDIPPS  499 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHh-cCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence            3455555555 4567788889988888843321   111223688899888 7888999999999988765432    44


Q ss_pred             CChhhhhhhHHHHHHhhcC-CCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 043676          165 PPFDQVRPALPALAQLVHS-NDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVT  243 (446)
Q Consensus       165 ~~~~~~~~~~~~l~~ll~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~  243 (446)
                      .......-++|.|..++.+ ....+|..-+.+|..++....    .+.+.+.-.....++..++.+...         -.
T Consensus       500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~----rFle~~q~~~~~g~~n~~nset~~---------~~  566 (1431)
T KOG1240|consen  500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY----RFLELTQELRQAGMLNDPNSETAP---------EQ  566 (1431)
T ss_pred             cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH----HHHHHHHHHHhcccccCccccccc---------cc
Confidence            4555567788999999887 567778888888888775422    122222222222234443332000         00


Q ss_pred             CCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHH
Q 043676          244 GDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG-NREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWA  322 (446)
Q Consensus       244 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a  322 (446)
                      ........+. ..+-+....++.++ ++-||..-+..|.-||.. ..+.    -+.-+++.|+..|+++|+.+|..-...
T Consensus       567 ~~~~~~~~L~-~~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFGk~k----sND~iLshLiTfLNDkDw~LR~aFfds  640 (1431)
T KOG1240|consen  567 NYNTELQALH-HTVEQMVSSLLSDS-PPIVKRALLESIIPLCVFFGKEK----SNDVILSHLITFLNDKDWRLRGAFFDS  640 (1431)
T ss_pred             ccchHHHHHH-HHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhhhcc----cccchHHHHHHHhcCccHHHHHHHHhh
Confidence            1112222222 23445667777777 788888888778877651 1110    011368999999999999999887777


Q ss_pred             HHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHH
Q 043676          323 ISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKI  402 (446)
Q Consensus       323 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l  402 (446)
                      +.-++..-....    .++..+|.|.+-|.++++-|...|++++..+++.+--.+.          ...     +.++..
T Consensus       641 I~gvsi~VG~rs----~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~----------~v~-----~i~~~v  701 (1431)
T KOG1240|consen  641 IVGVSIFVGWRS----VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKP----------AVK-----DILQDV  701 (1431)
T ss_pred             ccceEEEEeeee----HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchH----------HHH-----HHHHhh
Confidence            776554322221    2344789999999999999999999999999987654431          111     123344


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhcC
Q 043676          403 ENLQSHDNNEIHEKSVKIFKTYWC  426 (446)
Q Consensus       403 ~~l~~~~~~~v~~~a~~~l~~~~~  426 (446)
                      --++-|+|.=|++.+..+|-...+
T Consensus       702 ~PlL~hPN~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  702 LPLLCHPNLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             hhheeCchHHHHHHHHHHHHHHHh
Confidence            456788888888887777665543

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=98.31  E-value=0.00024  Score=66.11  Aligned_cols=255  Identities=15%  Similarity=0.144  Sum_probs=164.0

Q ss_pred             CCcHHHHHhcCCHHHHHHhh---------cCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCC-----
Q 043676           35 NPPIEKVIQSGVVPRFVEFL---------MREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSP-----  100 (446)
Q Consensus        35 ~~~~~~~~~~~~~~~L~~ll---------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~-----  100 (446)
                      ......+....++..|.++-         ....++.+...|++||+|+...++..|..+.+.|..+.++..|+..     
T Consensus        12 ~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~   91 (446)
T PF10165_consen   12 PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQ   91 (446)
T ss_pred             cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCC
Confidence            34455555555566666554         2223379999999999999998999999999999999999999875     


Q ss_pred             CHHHHHHHHHHHHHhhCCChHHHHHHHHc-CChHHHHHHhccc----------------cchhHHHHHHHHHHHhhcCCC
Q 043676          101 SDDVREQAVWALGNVAGDSPRCRDLVLSQ-GALIPLLAELNEH----------------AKLSMLRNATRTLSNFCRGKP  163 (446)
Q Consensus       101 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~l~~~l~~~----------------~~~~~~~~a~~~L~~l~~~~~  163 (446)
                      +.++.-...+.+.-++...+..+..+.+. +++..++..+...                .+......++..+.|+....+
T Consensus        92 ~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~  171 (446)
T PF10165_consen   92 PSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYP  171 (446)
T ss_pred             ChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccC
Confidence            78888888888888887777666665554 6666666655211                133456778888889988774


Q ss_pred             CCChhhh----hhhHHHHHHhh---cC--CCHhHHHHHHHHHHHhccCCcHHH-------H----HHHHhCcHHHHHHhc
Q 043676          164 EPPFDQV----RPALPALAQLV---HS--NDEDVLTYACWSLSYLADGTNDKI-------Q----AVIEAGVCPRLVELL  223 (446)
Q Consensus       164 ~~~~~~~----~~~~~~l~~ll---~~--~~~~v~~~~~~~l~~l~~~~~~~~-------~----~~~~~~~~~~l~~ll  223 (446)
                      .......    ..++..+..++   ..  .......+++.+|.++-.......       .    .......+..++.+|
T Consensus       172 ~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~L  251 (446)
T PF10165_consen  172 KSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFL  251 (446)
T ss_pred             cccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHH
Confidence            4333233    33444444442   11  135677778888877732111110       0    001113445555555


Q ss_pred             CC----CC----ccchhHHHHHHHHhhcCCchhhHHHHh----------------cCChHHHHHHhccCchHHHHHHHHH
Q 043676          224 GH----PS----PSVLTPALRTVGNIVTGDDFQTQCIIN----------------HGAVPYLLDMLVHNHEEIIKKEISW  279 (446)
Q Consensus       224 ~~----~~----~~~~~~a~~~l~~l~~~~~~~~~~~~~----------------~~~~~~l~~~l~~~~~~~v~~~a~~  279 (446)
                      ..    ..    .......+.+|.+++......++.+..                ..+-..|+.++.+. .+.+|..+..
T Consensus       252 d~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~~k~~vae  330 (446)
T PF10165_consen  252 DKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQLKDAVAE  330 (446)
T ss_pred             HHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-CchHHHHHHH
Confidence            43    11    234556677788888765544443332                24566788999888 6899999999


Q ss_pred             HHHHHhcCCHH
Q 043676          280 IISNITAGNRE  290 (446)
Q Consensus       280 ~l~~l~~~~~~  290 (446)
                      .+..+|..+..
T Consensus       331 llf~Lc~~d~~  341 (446)
T PF10165_consen  331 LLFVLCKEDAS  341 (446)
T ss_pred             HHHHHHhhhHH
Confidence            99888765443

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.23  E-value=2.5e-06  Score=49.82  Aligned_cols=40  Identities=40%  Similarity=0.707  Sum_probs=37.4

Q ss_pred             CHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhc
Q 043676          288 NREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNAT  327 (446)
Q Consensus       288 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  327 (446)
                      ++++++.+++.|++|.|++++++.++++++.|+|+|+|++
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            4678889999999999999999999999999999999986

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.22  E-value=2.8e-05  Score=66.02  Aligned_cols=187  Identities=15%  Similarity=0.100  Sum_probs=121.8

Q ss_pred             cCCCHhHHHHHHHHHHHhccCC--cHHHHHHHHh--CcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCC
Q 043676          182 HSNDEDVLTYACWSLSYLADGT--NDKIQAVIEA--GVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGA  257 (446)
Q Consensus       182 ~~~~~~v~~~~~~~l~~l~~~~--~~~~~~~~~~--~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~  257 (446)
                      .+.+++.+..++.-|..++...  ......+...  .++..+...+.+....+...|+.++..++........... ..+
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~~~   95 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYA-DIL   95 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHH-HHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH-HHH
Confidence            4568999999999999988655  2222222221  5667788888887888999999999999876555555443 347


Q ss_pred             hHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCC-hHHHHHHHhcCCcchHHHHHHHHHHhccCCC--HHH
Q 043676          258 VPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGL-IRPIVNLLQNAEFDTKKEAAWAISNATSGGT--QEQ  334 (446)
Q Consensus       258 ~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~-i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~--~~~  334 (446)
                      ++.|+..+.++ ...++..|..+|..++...+...      .+ ++.+.....++++.+|..++..+..+.....  ...
T Consensus        96 l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~~------~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~  168 (228)
T PF12348_consen   96 LPPLLKKLGDS-KKFIREAANNALDAIIESCSYSP------KILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV  168 (228)
T ss_dssp             HHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred             HHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcHH------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence            88899999888 88899999999999987544111      13 5667778888999999999999999977644  111


Q ss_pred             HH-HHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhh
Q 043676          335 IK-HLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAE  376 (446)
Q Consensus       335 ~~-~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~  376 (446)
                      .. ...-..+++.+..++.+.++++|..+-.++..+.+..+..
T Consensus       169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~  211 (228)
T PF12348_consen  169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER  211 (228)
T ss_dssp             G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred             hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence            11 1011236788899999999999999999999987766554

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=98.19  E-value=0.00021  Score=65.30  Aligned_cols=284  Identities=13%  Similarity=0.117  Sum_probs=165.2

Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcC
Q 043676            9 AGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHG   88 (446)
Q Consensus         9 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~   88 (446)
                      ..+++....+++++++.++.++...   ...+..+ ..+..|-.+|.++. ...|..|+++|..++...|+....     
T Consensus       271 ~wls~k~emV~lE~Ar~v~~~~~~n---v~~~~~~-~~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~P~kv~v-----  340 (898)
T COG5240         271 SWLSDKFEMVFLEAARAVCALSEEN---VGSQFVD-QTVSSLRTFLKSTR-VVLRFSAMRILNQLAMKYPQKVSV-----  340 (898)
T ss_pred             HHhcCcchhhhHHHHHHHHHHHHhc---cCHHHHH-HHHHHHHHHHhcch-HHHHHHHHHHHHHHHhhCCceeee-----
Confidence            3445555778888888887765542   1122232 24667777788888 788888888888888755432211     


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh
Q 043676           89 AVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFD  168 (446)
Q Consensus        89 ~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  168 (446)
                      +=+-+-.++.+.+..+...|+..|..-  +..+..+.++.  .++.++.-+    +...+.-+..++..|+...|.... 
T Consensus       341 cN~evEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrLv~--~I~sfvhD~----SD~FKiI~ida~rsLsl~Fp~k~~-  411 (898)
T COG5240         341 CNKEVESLISDENRTISTYAITTLLKT--GTEETIDRLVN--LIPSFVHDM----SDGFKIIAIDALRSLSLLFPSKKL-  411 (898)
T ss_pred             cChhHHHHhhcccccchHHHHHHHHHc--CchhhHHHHHH--HHHHHHHhh----ccCceEEeHHHHHHHHhhCcHHHH-
Confidence            113344556666666666666655432  33333333332  233333333    233333444444445444433332 


Q ss_pred             hhhhhHHHHHHhh-cCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCch
Q 043676          169 QVRPALPALAQLV-HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDF  247 (446)
Q Consensus       169 ~~~~~~~~l~~ll-~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~  247 (446)
                         ..+..|...| +.+.-+...++..++..+....|+...     .++..|..++.++.  ...-++++|+-|....|.
T Consensus       412 ---s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDce--y~~I~vrIL~iLG~EgP~  481 (898)
T COG5240         412 ---SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDCE--YHQITVRILGILGREGPR  481 (898)
T ss_pred             ---HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhcc--hhHHHHHHHHHhcccCCC
Confidence               2333444333 345678888888888888877765554     44556666665533  334556666666554433


Q ss_pred             hhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhc
Q 043676          248 QTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNAT  327 (446)
Q Consensus       248 ~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  327 (446)
                      ....   ...+..+..-+--+ +.-+|..|+.+|+.++..-.+   .+....+...|-+++.+.|.++|..|..++.++-
T Consensus       482 a~~P---~~yvrhIyNR~iLE-N~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         482 AKTP---GKYVRHIYNRLILE-NNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR  554 (898)
T ss_pred             CCCc---chHHHHHHHHHHHh-hhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence            2211   12345555554445 678999999999988753111   1111234556778899999999999999999985


Q ss_pred             c
Q 043676          328 S  328 (446)
Q Consensus       328 ~  328 (446)
                      .
T Consensus       555 ~  555 (898)
T COG5240         555 L  555 (898)
T ss_pred             h
Confidence            3

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.18  E-value=0.0015  Score=58.02  Aligned_cols=229  Identities=12%  Similarity=0.145  Sum_probs=162.8

Q ss_pred             CCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCC-----h----hhHHHHHhcCChHHHHHhhCCCCHHH-
Q 043676           35 NPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGT-----S----ENTNVVIDHGAVPIFVKLLSSPSDDV-  104 (446)
Q Consensus        35 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~-----~----~~~~~~~~~~~i~~L~~~L~~~~~~v-  104 (446)
                      ++-.-.+++.++++.|+.+|.+.+ .++....+..+..+...+     .    .....+++.++++.|++-++.-++.+ 
T Consensus       115 PdLYp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvk  193 (536)
T KOG2734|consen  115 PDLYPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVK  193 (536)
T ss_pred             hHHHHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcch
Confidence            333446788899999999999999 799999999999988522     2    23556778899999999887643333 


Q ss_pred             -----HHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhc-cccchhHHHHHHHHHHHhhcCCC-CCChhhhhhhHHHH
Q 043676          105 -----REQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELN-EHAKLSMLRNATRTLSNFCRGKP-EPPFDQVRPALPAL  177 (446)
Q Consensus       105 -----~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~l  177 (446)
                           ...++..+-|+....+.....+.+.|.+.-|+..+. +..-......+...+.-+..+.. +......-.++..+
T Consensus       194 eea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~l  273 (536)
T KOG2734|consen  194 EEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVL  273 (536)
T ss_pred             hhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHH
Confidence                 456778888999888888888888888887777553 33445667788888888877763 33333333445555


Q ss_pred             HHhhc----CC-----CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCc--
Q 043676          178 AQLVH----SN-----DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDD--  246 (446)
Q Consensus       178 ~~ll~----~~-----~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~--  246 (446)
                      ++-+.    ++     ..+..++...+|+.+......+ ..+....+++...-+++. ....+..++.+|-....+.+  
T Consensus       274 L~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr-~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt  351 (536)
T KOG2734|consen  274 LRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANR-ERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGT  351 (536)
T ss_pred             HhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhh-hhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCch
Confidence            44332    22     3677888889998888776644 457776777766666655 55567889999988888776  


Q ss_pred             hhhHHHHhcCChHHHHHHhc
Q 043676          247 FQTQCIINHGAVPYLLDMLV  266 (446)
Q Consensus       247 ~~~~~~~~~~~~~~l~~~l~  266 (446)
                      +.+..+++..++..+....-
T Consensus       352 ~~C~kfVe~lGLrtiF~~FM  371 (536)
T KOG2734|consen  352 PNCNKFVEILGLRTIFPLFM  371 (536)
T ss_pred             HHHHHHHHHHhHHHHHHHHh
Confidence            66777777777777766553

>PF05536 Neurochondrin: Neurochondrin

Probab=98.18  E-value=0.0002  Score=68.21  Aligned_cols=235  Identities=14%  Similarity=0.124  Sum_probs=160.7

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChh---hHHHHHhcCChHHHHHhhCC-------CCHHHHHHHHHHHHHh
Q 043676           46 VVPRFVEFLMREDYPQLQYEAAWVLINIASGTSE---NTNVVIDHGAVPIFVKLLSS-------PSDDVREQAVWALGNV  115 (446)
Q Consensus        46 ~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~~~i~~L~~~L~~-------~~~~v~~~a~~~l~~l  115 (446)
                      .+...+++|+..+ ++-|..++-.+.++...++.   .++.+.+.=+.+.+-++|++       +....+..++.+|..+
T Consensus         6 ~l~~c~~lL~~~~-D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f   84 (543)
T PF05536_consen    6 SLEKCLSLLKSAD-DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF   84 (543)
T ss_pred             HHHHHHHHhccCC-cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            3667788899888 78899999999999985543   23456677667888899987       3467788899999999


Q ss_pred             hCCChHHH--HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHH
Q 043676          116 AGDSPRCR--DLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYAC  193 (446)
Q Consensus       116 ~~~~~~~~--~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~  193 (446)
                      |.. |+..  ..+.  +.||.++..+.+..+..+...++.+|..++..+.........+.++.|.+.+.+ .+...+.++
T Consensus        85 ~~~-~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al  160 (543)
T PF05536_consen   85 CRD-PELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIAL  160 (543)
T ss_pred             cCC-hhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence            963 3332  2222  358999999965555699999999999999776666677778999999999987 666788888


Q ss_pred             HHHHHhccCCcHHHHH---HHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchh-----hHHHHhcCChHHHHHHh
Q 043676          194 WSLSYLADGTNDKIQA---VIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQ-----TQCIINHGAVPYLLDML  265 (446)
Q Consensus       194 ~~l~~l~~~~~~~~~~---~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~-----~~~~~~~~~~~~l~~~l  265 (446)
                      .++.+++.......-.   -.-..+++.+...+.......+...+..|..+....+..     ...-....+...+..++
T Consensus       161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL  240 (543)
T PF05536_consen  161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL  240 (543)
T ss_pred             HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence            8888877543311100   001144556666666666677788888888887655311     11112233445566666


Q ss_pred             ccCchHHHHHHHHHHHHHHh
Q 043676          266 VHNHEEIIKKEISWIISNIT  285 (446)
Q Consensus       266 ~~~~~~~v~~~a~~~l~~l~  285 (446)
                      ++...+.-|..+....+.+.
T Consensus       241 ~sr~~~~~R~~al~Laa~Ll  260 (543)
T PF05536_consen  241 QSRLTPSQRDPALNLAASLL  260 (543)
T ss_pred             hcCCCHHHHHHHHHHHHHHH
Confidence            66545566666665555554

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.16  E-value=5.1e-05  Score=64.43  Aligned_cols=189  Identities=16%  Similarity=0.119  Sum_probs=119.1

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCC-CCCcHHHHHh--cCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcC
Q 043676           12 WSDDNSLQLEATTLSRKLLSFD-RNPPIEKVIQ--SGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHG   88 (446)
Q Consensus        12 ~s~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~--~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~   88 (446)
                      .+.|...+..++..|..++.+. .......+..  ..+++.+...+.+.. ..+...|+.++..++........... ..
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~-~~   94 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYA-DI   94 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHH-HH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHH-HH
Confidence            5688999999999999998864 1122222222  145667777777777 68999999999998873333333332 34


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC-CCCh
Q 043676           89 AVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKP-EPPF  167 (446)
Q Consensus        89 ~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~  167 (446)
                      +++.|++.+.++...+++.|..+|..++...+.....+     ...+.... .+.++.++..++..+..+....+ ....
T Consensus        95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~-~~Kn~~vR~~~~~~l~~~l~~~~~~~~~  168 (228)
T PF12348_consen   95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL-----LEILSQGL-KSKNPQVREECAEWLAIILEKWGSDSSV  168 (228)
T ss_dssp             HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHT-T-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHH-hCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence            68999999999999999999999999997655111111     23344444 78899999999999999887765 1222


Q ss_pred             hh----hhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHH
Q 043676          168 DQ----VRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQ  208 (446)
Q Consensus       168 ~~----~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~  208 (446)
                      ..    ...+.+.+..++.+.++++|..+-.++..+....++...
T Consensus       169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~  213 (228)
T PF12348_consen  169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE  213 (228)
T ss_dssp             G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred             hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence            21    256788899999999999999999999998766555544

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=98.16  E-value=1.4e-05  Score=56.50  Aligned_cols=94  Identities=16%  Similarity=0.221  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccC
Q 043676          274 KKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC  353 (446)
Q Consensus       274 ~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~  353 (446)
                      |..++.+|+.++.+-+.......+ .++++++..+.++++.||..|+.+|.+++.....+...++-+  +++.|.++..+
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~--IF~~L~kl~~D   79 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNE--IFDALCKLSAD   79 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHcC
Confidence            566777788776644444444444 589999999999999999999999999998765555555444  78899999999


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q 043676          354 SDPEIVTVCLIGLENILK  371 (446)
Q Consensus       354 ~~~~~~~~~~~~l~~l~~  371 (446)
                      .++.|+..| +.|.++++
T Consensus        80 ~d~~Vr~~a-~~Ld~llk   96 (97)
T PF12755_consen   80 PDENVRSAA-ELLDRLLK   96 (97)
T ss_pred             CchhHHHHH-HHHHHHhc
Confidence            999998765 67777654

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.15  E-value=8.6e-06  Score=57.39  Aligned_cols=87  Identities=28%  Similarity=0.434  Sum_probs=69.5

Q ss_pred             HHHHHHhh-cCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHH
Q 043676           47 VPRFVEFL-MREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDL  125 (446)
Q Consensus        47 ~~~L~~ll-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~  125 (446)
                      +|.|++.+ ++++ +.+|..++++|+.+..  +         ..++.|..+++++++.+|..++++|+.+-         
T Consensus         1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG---------   59 (88)
T ss_dssp             HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred             CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence            57889988 6666 9999999999995532  2         34899999999999999999999999873         


Q ss_pred             HHHcCChHHHHHHhccccchhHHHHHHHHHH
Q 043676          126 VLSQGALIPLLAELNEHAKLSMLRNATRTLS  156 (446)
Q Consensus       126 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~  156 (446)
                        ....++.+.+.+.++.+..++..+.++|+
T Consensus        60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 --DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence              12267889999966667777888888874

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=0.00032  Score=66.11  Aligned_cols=326  Identities=12%  Similarity=0.116  Sum_probs=171.5

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHH
Q 043676            6 ALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVI   85 (446)
Q Consensus         6 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~   85 (446)
                      .+-+.|+++|..+|-..++.|+++-.   .    ++.+ ..+|.+...|.+.. +-+|+.|..++..+-....    .++
T Consensus       103 a~RkDLQHPNEyiRG~TLRFLckLkE---~----ELle-pl~p~IracleHrh-sYVRrNAilaifsIyk~~~----~L~  169 (948)
T KOG1058|consen  103 AYRKDLQHPNEYIRGSTLRFLCKLKE---P----ELLE-PLMPSIRACLEHRH-SYVRRNAILAIFSIYKNFE----HLI  169 (948)
T ss_pred             HHhhhccCchHhhcchhhhhhhhcCc---H----HHhh-hhHHHHHHHHhCcc-hhhhhhhheeehhHHhhhh----hhc
Confidence            34567889999999999988887421   1    2333 47899999999999 8999999988888776211    111


Q ss_pred             hcCChHHHHHhh-CCCCHHHHHHHHHHHHH----------------------------------hhCCChHHHHHHHHcC
Q 043676           86 DHGAVPIFVKLL-SSPSDDVREQAVWALGN----------------------------------VAGDSPRCRDLVLSQG  130 (446)
Q Consensus        86 ~~~~i~~L~~~L-~~~~~~v~~~a~~~l~~----------------------------------l~~~~~~~~~~~~~~~  130 (446)
                       ..+-+.+-++| ...++..+++|...|..                                  .|..+|.-+.     .
T Consensus       170 -pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~-----~  243 (948)
T KOG1058|consen  170 -PDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKA-----R  243 (948)
T ss_pred             -CChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhh-----H
Confidence             11122222222 22445555554433332                                  2221121111     1


Q ss_pred             ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcC-CCHhHHHHHHHHHHHhccCCcHHHHH
Q 043676          131 ALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHS-NDEDVLTYACWSLSYLADGTNDKIQA  209 (446)
Q Consensus       131 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~v~~~~~~~l~~l~~~~~~~~~~  209 (446)
                      .+..+..+| .+.++.++..++.+|..++..+     .........++.++.. +|-.+.--.+.-|..+.....    .
T Consensus       244 ~i~~i~~lL-~stssaV~fEaa~tlv~lS~~p-----~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~----~  313 (948)
T KOG1058|consen  244 YIRCIYNLL-SSTSSAVIFEAAGTLVTLSNDP-----TALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHE----K  313 (948)
T ss_pred             HHHHHHHHH-hcCCchhhhhhcceEEEccCCH-----HHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhH----H
Confidence            223333333 2223344444444443333321     0111122222222221 122222222222222221111    1


Q ss_pred             HHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCC-chhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCC
Q 043676          210 VIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGD-DFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGN  288 (446)
Q Consensus       210 ~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~  288 (446)
                      +++ |++--+++.|.+++-+++..++.....|+... -...-.+++..+...--.  .+......|..-..+++.++..-
T Consensus       314 il~-~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~--e~d~~~~yRqlLiktih~cav~F  390 (948)
T KOG1058|consen  314 ILQ-GLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE--ESDDNGKYRQLLIKTIHACAVKF  390 (948)
T ss_pred             HHH-HHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc--ccccchHHHHHHHHHHHHHhhcC
Confidence            122 66667788889999999999998887776532 221111111111111111  11224567888888998887765


Q ss_pred             HHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhccc-CCCHHHHHHHHHHHH
Q 043676          289 REQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLL-CSDPEIVTVCLIGLE  367 (446)
Q Consensus       289 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~~~~~l~  367 (446)
                      ++...     .+++.|++.+.+.++......+..+...... -+..+..     .+..|.+-+. -..+++...++|++.
T Consensus       391 p~~aa-----tvV~~ll~fisD~N~~aas~vl~FvrE~iek-~p~Lr~~-----ii~~l~~~~~~irS~ki~rgalwi~G  459 (948)
T KOG1058|consen  391 PEVAA-----TVVSLLLDFISDSNEAAASDVLMFVREAIEK-FPNLRAS-----IIEKLLETFPQIRSSKICRGALWILG  459 (948)
T ss_pred             hHHHH-----HHHHHHHHHhccCCHHHHHHHHHHHHHHHHh-CchHHHH-----HHHHHHHhhhhhcccccchhHHHHHH
Confidence            55433     5788999999888877666666666655543 2232222     3455555553 356788889999999


Q ss_pred             HHHHhhh
Q 043676          368 NILKVGE  374 (446)
Q Consensus       368 ~l~~~~~  374 (446)
                      ..+....
T Consensus       460 eYce~~~  466 (948)
T KOG1058|consen  460 EYCEGLS  466 (948)
T ss_pred             HHHhhhH
Confidence            8776544

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.12  E-value=7.6e-06  Score=57.66  Aligned_cols=86  Identities=34%  Similarity=0.453  Sum_probs=69.5

Q ss_pred             hHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676            4 FPALVAGV-WSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN   82 (446)
Q Consensus         4 i~~l~~~l-~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~   82 (446)
                      ||.|++.| +++++.++..++++|.++-.            ...++.|.+++++++ +.+|..|+++|+.+..       
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vr~~a~~aL~~i~~-------   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD------------PEAIPALIELLKDED-PMVRRAAARALGRIGD-------   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH------------HHHHHHHHHHHTSSS-HHHHHHHHHHHHCCHH-------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC------------HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-------
Confidence            68899999 78999999999999984311            135999999998888 9999999999998842       


Q ss_pred             HHHhcCChHHHHHhhCCC-CHHHHHHHHHHHH
Q 043676           83 VVIDHGAVPIFVKLLSSP-SDDVREQAVWALG  113 (446)
Q Consensus        83 ~~~~~~~i~~L~~~L~~~-~~~v~~~a~~~l~  113 (446)
                          ...++.|.+++.++ +..+|..|+.+|+
T Consensus        61 ----~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 ----PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             ----HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence                23689999988874 5667898888874

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.11  E-value=0.0005  Score=60.83  Aligned_cols=239  Identities=16%  Similarity=0.106  Sum_probs=170.1

Q ss_pred             HHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCC---------cHHHHHHHHhCcHHHHHHhc
Q 043676          153 RTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGT---------NDKIQAVIEAGVCPRLVELL  223 (446)
Q Consensus       153 ~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~---------~~~~~~~~~~~~~~~l~~ll  223 (446)
                      .-+..++..+........-++++.++.+|.+++.++...++..+..+...+         ...+..+++.++++.|++-+
T Consensus       106 Q~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnv  185 (536)
T KOG2734|consen  106 QEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNV  185 (536)
T ss_pred             HHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHH
Confidence            334444444433334555688999999999999999999999999988431         13455677889999999988


Q ss_pred             CCCCccc------hhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccC-chHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 043676          224 GHPSPSV------LTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHN-HEEIIKKEISWIISNITAGNREQIQAVI  296 (446)
Q Consensus       224 ~~~~~~~------~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~  296 (446)
                      ..-+..+      ...++..+-|+....+.......+.|.+..|+.-+... .-...+..|.-+++-+...+.+.+..+-
T Consensus       186 eRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~  265 (536)
T KOG2734|consen  186 ERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLG  265 (536)
T ss_pred             HHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhc
Confidence            7644444      34567888899988888888888889999988865433 2445677777888877776666666666


Q ss_pred             HcCChHHHHHHHh---cCC------cchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHH
Q 043676          297 DAGLIRPIVNLLQ---NAE------FDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLE  367 (446)
Q Consensus       297 ~~~~i~~L~~ll~---~~~------~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~  367 (446)
                      ..+++..+++-+.   ..+      .+..++...+||.+..  .+.++..+....++....-+++. ....+..++++|.
T Consensus       266 ~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm--~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd  342 (536)
T KOG2734|consen  266 PLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLM--APANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLD  342 (536)
T ss_pred             CcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhc--ChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHH
Confidence            7778888776553   233      3567888889998887  46788888877777777666665 4456777888888


Q ss_pred             HHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHh
Q 043676          368 NILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENL  405 (446)
Q Consensus       368 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l  405 (446)
                      ......+.           .+++..|.+.+|+..+-.+
T Consensus       343 ~am~g~~g-----------t~~C~kfVe~lGLrtiF~~  369 (536)
T KOG2734|consen  343 HAMFGPEG-----------TPNCNKFVEILGLRTIFPL  369 (536)
T ss_pred             HHHhCCCc-----------hHHHHHHHHHHhHHHHHHH
Confidence            76554332           2357778888888886544

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.07  E-value=0.0095  Score=58.52  Aligned_cols=343  Identities=16%  Similarity=0.138  Sum_probs=195.5

Q ss_pred             HHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhc------CC-CChHHHHHHHHHHHHHcC---CChhhHHHHHhcCC
Q 043676           20 LEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLM------RE-DYPQLQYEAAWVLINIAS---GTSENTNVVIDHGA   89 (446)
Q Consensus        20 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~------~~-~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~   89 (446)
                      ..|...+..+++..+.+..     .++++.+++.+.      .+ +++.-+.-|+++++++++   .....+. .++.-+
T Consensus       390 ~Aa~~~l~~~~~KR~ke~l-----~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~-~mE~fl  463 (1010)
T KOG1991|consen  390 TAALDFLTTLVSKRGKETL-----PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKS-QMEYFL  463 (1010)
T ss_pred             HHHHHHHHHHHHhcchhhh-----hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHH-HHHHHH
Confidence            3455566665554322222     256777777777      22 236777888888888875   1222222 223345


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC---C
Q 043676           90 VPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEP---P  166 (446)
Q Consensus        90 i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~---~  166 (446)
                      ++.+...++++.--+|..|+|+++.++...-.....+  ..++....+.|..+.+-.++..|+-+|..+..+.+..   .
T Consensus       464 v~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~  541 (1010)
T KOG1991|consen  464 VNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKV  541 (1010)
T ss_pred             HHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhH
Confidence            6677777888889999999999999994321111122  2245666777756778899999999999998886432   2


Q ss_pred             hhhhhhhHHHHHHhhcCCCHhHHHHHHHHH-HHhccCCcHHHHHHHHhCcHHHHHHhcCC---CCcc---chhHHHHHHH
Q 043676          167 FDQVRPALPALAQLVHSNDEDVLTYACWSL-SYLADGTNDKIQAVIEAGVCPRLVELLGH---PSPS---VLTPALRTVG  239 (446)
Q Consensus       167 ~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l-~~l~~~~~~~~~~~~~~~~~~~l~~ll~~---~~~~---~~~~a~~~l~  239 (446)
                      .....+.++.+..+.+.-+.+....++..+ +..+..-......+.+ .+...+.+++..   .++.   -...|.++|.
T Consensus       542 ~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~  620 (1010)
T KOG1991|consen  542 SAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILR  620 (1010)
T ss_pred             hhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHH
Confidence            234456666677777665555555544443 2233221111111222 455566666663   2222   2233444444


Q ss_pred             Hhhc------CCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCc
Q 043676          240 NIVT------GDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEF  313 (446)
Q Consensus       240 ~l~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~  313 (446)
                      .+..      ..+... .-++..+++.+-.++++. -.++-++++..+.+++...++.-..+.  |+++.+.+.++....
T Consensus       621 Ti~Til~s~e~~p~vl-~~le~~~l~vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~  696 (1010)
T KOG1991|consen  621 TISTILLSLENHPEVL-KQLEPIVLPVIGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGI  696 (1010)
T ss_pred             HHHHHHHHHhccHHHH-HHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhH
Confidence            4421      122222 223445667777777777 777888888888887654333222233  478888888887777


Q ss_pred             chHHHHHHHHHHhccCCCHHHHHHH-HHcCChHHHHhcccC--CCHHHHHHHHHHHHHHHHhhhh
Q 043676          314 DTKKEAAWAISNATSGGTQEQIKHL-VREGCVKPLCDLLLC--SDPEIVTVCLIGLENILKVGEA  375 (446)
Q Consensus       314 ~v~~~a~~aL~~l~~~~~~~~~~~l-~~~~~i~~L~~ll~~--~~~~~~~~~~~~l~~l~~~~~~  375 (446)
                      +--....-+|.|....+.+.....- ...-++.....++.+  ....=.+.|++.+..++-.+.+
T Consensus       697 dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg  761 (1010)
T KOG1991|consen  697 DYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKG  761 (1010)
T ss_pred             HHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcC
Confidence            7778888899998887654332110 001123333334433  2222334566777766654444

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=0.0071  Score=59.91  Aligned_cols=260  Identities=12%  Similarity=0.087  Sum_probs=159.2

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChHHH
Q 043676           45 GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSS-PSDDVREQAVWALGNVAGDSPRCR  123 (446)
Q Consensus        45 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~~~  123 (446)
                      +++..|+..+++.+ ..++..|+..++.++...|.   .+.+ .++...+.++.. .++..-..++.+|+.++...--.-
T Consensus       341 ~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp~---~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp  415 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLPP---ELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP  415 (1133)
T ss_pred             HHHHHHHHhccCCc-chhhHHHHHHHHHHHccCcH---HHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence            67888888999999 79999999999999986662   2222 346666665554 345666689999999985432111


Q ss_pred             HHHHHcCChHHHHHHhcc-------ccchhHHHHHHHHHHHhhcCCCCCCh-hhhhhhHHHH-HHhhcCCCHhHHHHHHH
Q 043676          124 DLVLSQGALIPLLAELNE-------HAKLSMLRNATRTLSNFCRGKPEPPF-DQVRPALPAL-AQLVHSNDEDVLTYACW  194 (446)
Q Consensus       124 ~~~~~~~~i~~l~~~l~~-------~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~~~l-~~ll~~~~~~v~~~~~~  194 (446)
                      ..+.  .+++.+++-+..       .....++..|+.+++.+++......+ .....+.+.| ...+-+.+-.+|+.|..
T Consensus       416 s~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA  493 (1133)
T KOG1943|consen  416 SLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA  493 (1133)
T ss_pred             HHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence            1111  145555555521       22457999999999999988632222 1223333332 23344667888999988


Q ss_pred             HHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHH-hccCchHHH
Q 043676          195 SLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDM-LVHNHEEII  273 (446)
Q Consensus       195 ~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~v  273 (446)
                      ++........+.-      .+++ |+...+.-.-..+.++...+..-....+..+..++     +.++.. +.+= +..+
T Consensus       494 AlqE~VGR~~n~p------~Gi~-Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f-----~~L~t~Kv~HW-d~~i  560 (1133)
T KOG1943|consen  494 ALQENVGRQGNFP------HGIS-LISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVF-----NHLLTKKVCHW-DVKI  560 (1133)
T ss_pred             HHHHHhccCCCCC------Cchh-hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHH-----HHHHhcccccc-cHHH
Confidence            8877654322110      1111 22222222233344555555544444555554433     333333 5566 8899


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhcc
Q 043676          274 KKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATS  328 (446)
Q Consensus       274 ~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  328 (446)
                      |+.++++|.++....++    ....+.++++++...+.+...+..+..+.+.+..
T Consensus       561 relaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~  611 (1133)
T KOG1943|consen  561 RELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG  611 (1133)
T ss_pred             HHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence            99999999998664443    2344688889998888888887776666666644

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.02  E-value=1e-05  Score=50.93  Aligned_cols=55  Identities=24%  Similarity=0.547  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHh
Q 043676          271 EIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNA  326 (446)
Q Consensus       271 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  326 (446)
                      +.+|..|+++|++++...++....+.. .+++.|+.++++.++.||..|+++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            468999999999998777776666444 7999999999999999999999999875

...

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.96  E-value=0.0085  Score=60.04  Aligned_cols=238  Identities=13%  Similarity=0.061  Sum_probs=148.1

Q ss_pred             HHHHHhccccchhHHHHHHHHHHHhhcCCCCC--ChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHH
Q 043676          134 PLLAELNEHAKLSMLRNATRTLSNFCRGKPEP--PFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVI  211 (446)
Q Consensus       134 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~  211 (446)
                      .+.....++.+..++..+...|..++...+..  .......+...+.+-+++.+...+...+.++..+....+.....++
T Consensus       657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i  736 (1176)
T KOG1248|consen  657 TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI  736 (1176)
T ss_pred             HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            44445545567899999999999999884222  2223355666677777777888999999999888866553333344


Q ss_pred             HhCcHHHHHHhcCCCCccchhHHHHHHHHhhc-------CCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHH
Q 043676          212 EAGVCPRLVELLGHPSPSVLTPALRTVGNIVT-------GDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNI  284 (446)
Q Consensus       212 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~-------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l  284 (446)
                      ...+.+.++. ++..+...|..|..+|..++.       +++. ....+ ..++..+...+-.. ...+....+.++..+
T Consensus       737 ~k~I~EvIL~-~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~l-nefl~~Isagl~gd-~~~~~as~Ivai~~i  812 (1176)
T KOG1248|consen  737 PKLIPEVILS-LKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAIL-NEFLSIISAGLVGD-STRVVASDIVAITHI  812 (1176)
T ss_pred             HHHHHHHHHh-cccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHH-HHHHHHHHhhhccc-HHHHHHHHHHHHHHH
Confidence            4334444444 488888889999888888873       1111 01111 11333333333333 333333334445544


Q ss_pred             hcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHH
Q 043676          285 TAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLI  364 (446)
Q Consensus       285 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~  364 (446)
                      ..........-.-.+++..+.-.+.++.+++++.|+..+.-++............ ..+++.+..+.++..-.++.++-.
T Consensus       813 l~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~-~~LL~sll~ls~d~k~~~r~Kvr~  891 (1176)
T KOG1248|consen  813 LQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHL-EELLPSLLALSHDHKIKVRKKVRL  891 (1176)
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH-HHHHHHHHHHHHhhhHHHHHHHHH
Confidence            3321111111111245666666778889999999999999998875555544433 237888888888888899999999


Q ss_pred             HHHHHHHhhhhh
Q 043676          365 GLENILKVGEAE  376 (446)
Q Consensus       365 ~l~~l~~~~~~~  376 (446)
                      .|..+++...-.
T Consensus       892 LlekLirkfg~~  903 (1176)
T KOG1248|consen  892 LLEKLIRKFGAE  903 (1176)
T ss_pred             HHHHHHHHhCHH
Confidence            999888765443

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.95  E-value=0.0012  Score=62.78  Aligned_cols=141  Identities=8%  Similarity=0.111  Sum_probs=92.1

Q ss_pred             hhhHHHHHHhhcCC-CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhh
Q 043676          171 RPALPALAQLVHSN-DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQT  249 (446)
Q Consensus       171 ~~~~~~l~~ll~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~  249 (446)
                      ...++.|..+|+.+ .-+.......++..+....++...     .++..|...+.++  ....-+.+++.-+....|...
T Consensus       390 ~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc--e~~~i~~rILhlLG~EgP~a~  462 (865)
T KOG1078|consen  390 TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC--EFTQIAVRILHLLGKEGPKAP  462 (865)
T ss_pred             HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc--cchHHHHHHHHHHhccCCCCC
Confidence            34556666666643 567777788888777765554444     3445555555443  345556666666665443211


Q ss_pred             HHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhc
Q 043676          250 QCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNAT  327 (446)
Q Consensus       250 ~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  327 (446)
                         .....+..+.....-+ +..+|.+|+.++.++..+++...     ..+.-.+.+++.+.+.++|..|..+|.++-
T Consensus       463 ---~Pskyir~iyNRviLE-n~ivRaaAv~alaKfg~~~~~l~-----~sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  463 ---NPSKYIRFIYNRVILE-NAIVRAAAVSALAKFGAQDVVLL-----PSILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             ---CcchhhHHHhhhhhhh-hhhhHHHHHHHHHHHhcCCCCcc-----ccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence               1234556666665556 77999999999999975443322     245566778888999999999999999886

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.95  E-value=0.0047  Score=60.52  Aligned_cols=348  Identities=14%  Similarity=0.110  Sum_probs=189.9

Q ss_pred             CHHHHHHHHHHHHHHhcCC-CCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHH
Q 043676           15 DNSLQLEATTLSRKLLSFD-RNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIF   93 (446)
Q Consensus        15 ~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L   93 (446)
                      ++....-|++.+..+++.- +...-+...+.=+++.+...++++- --+|.+|+|+++.++..+-  ...-.-..++...
T Consensus       431 ~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~~~~~df--~d~~~l~~ale~t  507 (1010)
T KOG1991|consen  431 NPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPY-GYLRARACWVLSQFSSIDF--KDPNNLSEALELT  507 (1010)
T ss_pred             ChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCch-hHHHHHHHHHHHHHHhccC--CChHHHHHHHHHH
Confidence            4666667777777776532 1333344445556777777888888 7999999999999995222  1111122345666


Q ss_pred             HHhhC-CCCHHHHHHHHHHHHHhhCCChHHHHHHHH--cCChHHHHHHhccccchhHHHHHHHHH-HHhhcCCCCCChhh
Q 043676           94 VKLLS-SPSDDVREQAVWALGNVAGDSPRCRDLVLS--QGALIPLLAELNEHAKLSMLRNATRTL-SNFCRGKPEPPFDQ  169 (446)
Q Consensus        94 ~~~L~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~--~~~i~~l~~~l~~~~~~~~~~~a~~~L-~~l~~~~~~~~~~~  169 (446)
                      .+.|. +.+-.|+..|+.+|..+.++.+.....+..  .+.+..++.+. +..+.+....++..+ ..+++.-..-....
T Consensus       508 ~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~-ne~End~Lt~vme~iV~~fseElsPfA~eL  586 (1010)
T KOG1991|consen  508 HNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLS-NEVENDDLTNVMEKIVCKFSEELSPFAVEL  586 (1010)
T ss_pred             HHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHHhhchhHHHH
Confidence            66666 677889999999999888766644333322  11334444454 333333333333332 23333322222233


Q ss_pred             hhhhHHHHHHhhcC---C---CHhHHHHHHHHHHHhc------cCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHH
Q 043676          170 VRPALPALAQLVHS---N---DEDVLTYACWSLSYLA------DGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRT  237 (446)
Q Consensus       170 ~~~~~~~l~~ll~~---~---~~~v~~~~~~~l~~l~------~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~  237 (446)
                      .........+++.+   .   +.+-...|.++|..+.      ...++..+ -.+.-+++.+-..+++.-.++-+.++..
T Consensus       587 ~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~-~le~~~l~vi~~iL~~~i~dfyeE~~ei  665 (1010)
T KOG1991|consen  587 CQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK-QLEPIVLPVIGFILKNDITDFYEELLEI  665 (1010)
T ss_pred             HHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            34555556666663   1   2333344444444433      12222221 2333556666666777777778888888


Q ss_pred             HHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc-CCHHHHHHH-HHcCChHHHHHHHhcC--Cc
Q 043676          238 VGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA-GNREQIQAV-IDAGLIRPIVNLLQNA--EF  313 (446)
Q Consensus       238 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~-~~~~~i~~L~~ll~~~--~~  313 (446)
                      ...++...++..-.+.  ++++.+.+.+++. ....-....-+|.|+.. +.+.....- .-.-++.....++.+.  ..
T Consensus       666 ~~~~t~~~~~Isp~mW--~ll~li~e~~~~~-~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D  742 (1010)
T KOG1991|consen  666 VSSLTFLSKEISPIMW--GLLELILEVFQDD-GIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGED  742 (1010)
T ss_pred             HhhhhhhhcccCHHHH--HHHHHHHHHHhhh-hHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCch
Confidence            8888766655444444  4678888888887 67777888889998875 333211110 0011233333444442  22


Q ss_pred             chHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhc----cc--CCCHHHHHHHHHHHHHHHHhhhhh
Q 043676          314 DTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDL----LL--CSDPEIVTVCLIGLENILKVGEAE  376 (446)
Q Consensus       314 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~l----l~--~~~~~~~~~~~~~l~~l~~~~~~~  376 (446)
                      .=...|+..+.-+...... ...+     .+|.++++    +.  ..+...+..+++...+.+...+..
T Consensus       743 ~d~~~a~kLle~iiL~~kg-~~dq-----~iplf~~~a~~~l~~~~e~s~~~~~~leVvinalyynP~l  805 (1010)
T KOG1991|consen  743 SDCESACKLLEVIILNCKG-LLDQ-----YIPLFLELALSRLTREVETSELRVMLLEVVINALYYNPKL  805 (1010)
T ss_pred             HHHHHHHHHHHHHHHHhcC-cHhh-----HhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCcHH
Confidence            3344466666655443221 1111     34443333    22  245567777777766666554443

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.94  E-value=8.4e-05  Score=52.39  Aligned_cols=67  Identities=16%  Similarity=0.381  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCCChHHHHHHHH
Q 043676           62 LQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLL--SSPSDDVREQAVWALGNVAGDSPRCRDLVLS  128 (446)
Q Consensus        62 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L--~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~  128 (446)
                      +|...+++++|++..++...+.+.+.|+++.++...  .+.+|-++++|++++.|++.++++++..+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            466788999999999999999999999999999864  4478999999999999999999998877654

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.94  E-value=0.0052  Score=59.69  Aligned_cols=168  Identities=18%  Similarity=0.198  Sum_probs=131.2

Q ss_pred             hcCCCChHHHHHHHH-HHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCCh
Q 043676           54 LMREDYPQLQYEAAW-VLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGAL  132 (446)
Q Consensus        54 l~~~~~~~~~~~a~~-~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i  132 (446)
                      +.+.+ +..|..|+. ++..++.+++ ..      ...+-+++...+.+.++++..-.=|.+++...|..  .+.   ++
T Consensus        28 l~s~n-~~~kidAmK~iIa~M~~G~d-ms------sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~--~lL---av   94 (757)
T COG5096          28 LESSN-DYKKIDAMKKIIAQMSLGED-MS------SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL--ALL---AV   94 (757)
T ss_pred             ccccC-hHHHHHHHHHHHHHHhcCCC-hH------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH--HHH---HH
Confidence            66666 677777875 6677776443 22      23466666666889999999888888888887742  222   46


Q ss_pred             HHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHH
Q 043676          133 IPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIE  212 (446)
Q Consensus       133 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~  212 (446)
                      ..+.+-+ +++++.+|..|+++++.+=.      ......+++.+.+++.++++.||..|+-++..+-+.+++.   ..+
T Consensus        95 Nti~kDl-~d~N~~iR~~AlR~ls~l~~------~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l---~~~  164 (757)
T COG5096          95 NTIQKDL-QDPNEEIRGFALRTLSLLRV------KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDL---YHE  164 (757)
T ss_pred             HHHHhhc-cCCCHHHHHHHHHHHHhcCh------HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhh---hhc
Confidence            7788888 88999999999999987633      3456778899999999999999999999999998776643   445


Q ss_pred             hCcHHHHHHhcCCCCccchhHHHHHHHHhhcC
Q 043676          213 AGVCPRLVELLGHPSPSVLTPALRTVGNIVTG  244 (446)
Q Consensus       213 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~  244 (446)
                      .|.+..+..++.+.++.+..+|+.++..+-..
T Consensus       165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         165 LGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            67889999999999999999999999887653

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=0.00051  Score=64.70  Aligned_cols=136  Identities=16%  Similarity=0.160  Sum_probs=96.0

Q ss_pred             hhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh-cCCCCccchhHHHHHHHHhhcCCchhhH
Q 043676          172 PALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVEL-LGHPSPSVLTPALRTVGNIVTGDDFQTQ  250 (446)
Q Consensus       172 ~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~l-l~~~~~~~~~~a~~~l~~l~~~~~~~~~  250 (446)
                      ++=+.+-+++.+.|+-+|.....++.---....       ..+++..|++. +++.+.+||+.|..+|+-++..+++.  
T Consensus       519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~--  589 (929)
T KOG2062|consen  519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ--  589 (929)
T ss_pred             hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhh--
Confidence            445667788888888888877766543221111       11556667776 66788999999999999998877653  


Q ss_pred             HHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCC
Q 043676          251 CIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGG  330 (446)
Q Consensus       251 ~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  330 (446)
                             .+..+++|....++.||..++.+|+-.|+++...       ..+..|-.+..+...-||+.|+.++.-+....
T Consensus       590 -------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~-------eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~  655 (929)
T KOG2062|consen  590 -------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK-------EAINLLEPLTSDPVDFVRQGALIALAMIMIQQ  655 (929)
T ss_pred             -------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH-------HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhc
Confidence                   4667788877769999999999999998854221       13444445555666778999998888775543

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.84  E-value=0.035  Score=54.22  Aligned_cols=225  Identities=13%  Similarity=0.147  Sum_probs=152.8

Q ss_pred             CCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHH
Q 043676           99 SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALA  178 (446)
Q Consensus        99 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~  178 (446)
                      +..|.+.-.+.+++...+...+.......  ..+...++.+..+..+.++..++.+++..+.  +........+++..|.
T Consensus       461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~~p~ild~L~  536 (1005)
T KOG2274|consen  461 QESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSLQPMILDGLL  536 (1005)
T ss_pred             ccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccccchHHHHHHH
Confidence            35677766889999877754332222211  1345566666566777888899998888883  3444455678889999


Q ss_pred             HhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC--CCccchhHHHHHHHHhhcCCchhhHHHHhcC
Q 043676          179 QLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLTPALRTVGNIVTGDDFQTQCIINHG  256 (446)
Q Consensus       179 ~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~  256 (446)
                      ++....+.++......+|+..+..+++... ..+..+.|.++.+...  +++.+...+-.++..++... .+.. -....
T Consensus       537 qlas~~s~evl~llmE~Ls~vv~~dpef~a-s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~g-~m~e~  613 (1005)
T KOG2274|consen  537 QLASKSSDEVLVLLMEALSSVVKLDPEFAA-SMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANYG-PMQER  613 (1005)
T ss_pred             HHcccccHHHHHHHHHHHHHHhccChhhhh-hhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-Hhhc-chHHH
Confidence            999988999999999999999998886554 5666788877766543  66666666666666655411 1111 11234


Q ss_pred             ChHHHHHHhccCch----HHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCCcchHHHHHHHHHHhccCCC
Q 043676          257 AVPYLLDMLVHNHE----EIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQ-NAEFDTKKEAAWAISNATSGGT  331 (446)
Q Consensus       257 ~~~~l~~~l~~~~~----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~  331 (446)
                      .+|.+++.+..+ .    ......++..|.-+.+..+.-.....-.-++|++.++.- ++|..+.+.+-.+|..+...+.
T Consensus       614 ~iPslisil~~~-~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~  692 (1005)
T KOG2274|consen  614 LIPSLISVLQLN-ADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTL  692 (1005)
T ss_pred             HHHHHHHHHcCc-ccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence            789999999876 4    566677788888777743333333333357788887664 4577889999999999887643

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.84  E-value=0.00016  Score=64.58  Aligned_cols=300  Identities=14%  Similarity=0.129  Sum_probs=156.0

Q ss_pred             HHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhC-----CChHHHHHHHHcCChHHH
Q 043676           61 QLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAG-----DSPRCRDLVLSQGALIPL  135 (446)
Q Consensus        61 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~-----~~~~~~~~~~~~~~i~~l  135 (446)
                      .+|.++..+|.-++..-.-.+..++  .....+...+.+..+.++..+..++..+-.     ..|+..+.-...+.+..+
T Consensus       270 ~~rle~~qvl~~~a~~~~~~~~~~~--~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~  347 (728)
T KOG4535|consen  270 PMRLEALQVLTLLARYFSMTQAYLM--ELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM  347 (728)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence            4556666666665552222222222  233555556677889999999988877752     222221111122222111


Q ss_pred             H------HHhccccchhHHHHHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHH
Q 043676          136 L------AELNEHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQ  208 (446)
Q Consensus       136 ~------~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~  208 (446)
                      .      ....++..+..+...|-++.++.... ..-..-.....+..+..+-.+.+.-++..++++++-+.-+..-+..
T Consensus       348 ~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d  427 (728)
T KOG4535|consen  348 MLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQD  427 (728)
T ss_pred             HccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhh
Confidence            1      12223345667788888888886654 1111101111111122222233455777788888777766555554


Q ss_pred             HHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhc----CCch---hhHHHHhcCChHHHHHHh--ccCchHHHHHHHHH
Q 043676          209 AVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVT----GDDF---QTQCIINHGAVPYLLDML--VHNHEEIIKKEISW  279 (446)
Q Consensus       209 ~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~----~~~~---~~~~~~~~~~~~~l~~~l--~~~~~~~v~~~a~~  279 (446)
                      ...-......+...+.+..-..|..++|+++|++.    +.|.   ....+.. -.+..++...  .+..+.+|+..|..
T Consensus       428 ~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~navr  506 (728)
T KOG4535|consen  428 VIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNAVR  506 (728)
T ss_pred             HHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence            44455667777777877788899999999999974    2222   2222221 1222333222  22226789999999


Q ss_pred             HHHHHhcCCHHHHHHHHHc-------CChHHHHH-HHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcc
Q 043676          280 IISNITAGNREQIQAVIDA-------GLIRPIVN-LLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLL  351 (446)
Q Consensus       280 ~l~~l~~~~~~~~~~~~~~-------~~i~~L~~-ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll  351 (446)
                      +|+|+..-    .+.+.+.       +-+..+.. ..-.+...|+-+++.+++|+.++..-.....=....+++.|..++
T Consensus       507 aLgnllQv----lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv  582 (728)
T KOG4535|consen  507 ALGNLLQF----LQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLV  582 (728)
T ss_pred             HHhhHHHH----HHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHH
Confidence            99998641    1212221       11111211 112246789999999999998853210000000012355565555


Q ss_pred             c-CCCHHHHHHHHHHHH
Q 043676          352 L-CSDPEIVTVCLIGLE  367 (446)
Q Consensus       352 ~-~~~~~~~~~~~~~l~  367 (446)
                      . ..+-+++..|..+|.
T Consensus       583 ~~~~NFKVRi~AA~aL~  599 (728)
T KOG4535|consen  583 TSCKNFKVRIRAAAALS  599 (728)
T ss_pred             HHhccceEeehhhhhhc
Confidence            3 344555555555443

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.83  E-value=0.0071  Score=58.72  Aligned_cols=305  Identities=12%  Similarity=0.077  Sum_probs=183.1

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHH
Q 043676           13 SDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPI   92 (446)
Q Consensus        13 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~   92 (446)
                      ++-|.+...+.+++...++..  .....+.. -++...+..+..+..+-++..|+++++-.+.  ++.... ...++++.
T Consensus       461 ~e~P~Ll~Ra~~~i~~fs~~~--~~~~~~~~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~-~~p~ild~  534 (1005)
T KOG2274|consen  461 QESPFLLLRAFLTISKFSSST--VINPQLLQ-HFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLS-LQPMILDG  534 (1005)
T ss_pred             ccCHHHHHHHHHHHHHHHhhh--ccchhHHH-HHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccc-cchHHHHH
Confidence            566777778888888776652  11111221 2345555666555547788888888887774  222222 12467888


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhc-cccchhHHHHHHHHHHHhhcCCCCCChhhhh
Q 043676           93 FVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELN-EHAKLSMLRNATRTLSNFCRGKPEPPFDQVR  171 (446)
Q Consensus        93 L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  171 (446)
                      |.++....+.++....+.+|+..+..+|+... ..+..+.|.++.++. .+.++.+...+-.++..++... ...-....
T Consensus       535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~a-s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~g~m~e  612 (1005)
T KOG2274|consen  535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAA-SMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANYGPMQE  612 (1005)
T ss_pred             HHHHcccccHHHHHHHHHHHHHHhccChhhhh-hhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HhhcchHH
Confidence            88888888899999999999999988887543 345556666666654 4457777777777777777643 11222346


Q ss_pred             hhHHHHHHhhcCCC----HhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCccchhHHHHHHHHhhcCCc
Q 043676          172 PALPALAQLVHSND----EDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLTPALRTVGNIVTGDD  246 (446)
Q Consensus       172 ~~~~~l~~ll~~~~----~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~~a~~~l~~l~~~~~  246 (446)
                      ..+|.+++.+..++    .....-++..|..+.++.+.-.....-.-++|.+.++.-+ ++......+..|+..+.....
T Consensus       613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~  692 (1005)
T KOG2274|consen  613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTL  692 (1005)
T ss_pred             HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence            78999999998765    6666777777777776544333333334677888887665 566777888899988887655


Q ss_pred             hhhHHHHhcCC------hHHHHHHhccCchHHHHHHHHHHHHHHh----cCCHHHHHHHHHcCChHHHH-HHHhcCCcch
Q 043676          247 FQTQCIINHGA------VPYLLDMLVHNHEEIIKKEISWIISNIT----AGNREQIQAVIDAGLIRPIV-NLLQNAEFDT  315 (446)
Q Consensus       247 ~~~~~~~~~~~------~~~l~~~l~~~~~~~v~~~a~~~l~~l~----~~~~~~~~~~~~~~~i~~L~-~ll~~~~~~v  315 (446)
                      ++...--..++      ++.+..+|..    +.-..++..++.+.    .+-......-++ .++...+ ++-+.+...+
T Consensus       693 eq~~t~~~e~g~~~~yImqV~sqLLdp----~~sds~a~~VG~lV~tLit~a~~el~~n~d-~IL~Avisrmq~ae~lsv  767 (1005)
T KOG2274|consen  693 EQLLTWHDEPGHNLWYIMQVLSQLLDP----ETSDSAAAFVGPLVLTLITHASSELGPNLD-QILRAVISRLQQAETLSV  767 (1005)
T ss_pred             HHHHhhccCCCccHHHHHHHHHHHcCC----ccchhHHHHHhHHHHHHHHHHHHHhchhHH-HHHHHHHHHHHHhhhHHH
Confidence            44332222222      2333333432    22233333333332    221111111111 1233333 3444456777


Q ss_pred             HHHHHHHHHHhccCC
Q 043676          316 KKEAAWAISNATSGG  330 (446)
Q Consensus       316 ~~~a~~aL~~l~~~~  330 (446)
                      .+..+.+++++....
T Consensus       768 iQsLi~VfahL~~t~  782 (1005)
T KOG2274|consen  768 IQSLIMVFAHLVHTD  782 (1005)
T ss_pred             HHHHHHHHHHHhhCC
Confidence            788888888887653

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.83  E-value=0.0011  Score=63.10  Aligned_cols=140  Identities=13%  Similarity=0.036  Sum_probs=84.9

Q ss_pred             CcHHHHHHhcCC-CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHH
Q 043676          214 GVCPRLVELLGH-PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQI  292 (446)
Q Consensus       214 ~~~~~l~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~  292 (446)
                      +.+..|..+|+. +..+.+.....++..+...+++...     .++..|...+.+.   +...-+.+.|+-+....|.. 
T Consensus       391 ~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc---e~~~i~~rILhlLG~EgP~a-  461 (865)
T KOG1078|consen  391 VMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC---EFTQIAVRILHLLGKEGPKA-  461 (865)
T ss_pred             HHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc---cchHHHHHHHHHHhccCCCC-
Confidence            344555555554 3445566667777766665555443     2455566666554   44555666666665421110 


Q ss_pred             HHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHH
Q 043676          293 QAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENIL  370 (446)
Q Consensus       293 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~  370 (446)
                        ......+..+.+.+.-.+..+|..|..+|.++... ++...     ..+.-.|.+++.+.|.+++..|-..+..+-
T Consensus       462 --~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~-~~~l~-----~sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  462 --PNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQ-DVVLL-----PSILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             --CCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcC-CCCcc-----ccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence              00112344444444446788999999999999843 22222     224566788999999999999998888866

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.80  E-value=0.00067  Score=47.96  Aligned_cols=94  Identities=13%  Similarity=0.149  Sum_probs=69.1

Q ss_pred             hHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHH
Q 043676          315 TKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVE  394 (446)
Q Consensus       315 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~  394 (446)
                      .|+.++.+|..++..-......++-  .++++++..+.++++.+|..|+++|.++.+......            ...| 
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l~--~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~------------l~~f-   66 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYLD--EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI------------LPYF-   66 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHHH--HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH------------HHHH-
Confidence            3567778888776654444333333  379999999999999999999999999998766542            2222 


Q ss_pred             HhChHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 043676          395 EAGGLEKIENLQSHDNNEIHEKSVKIFKTYW  425 (446)
Q Consensus       395 ~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  425 (446)
                       ...++.|.++..+++++|+..| ..+.+++
T Consensus        67 -~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll   95 (97)
T PF12755_consen   67 -NEIFDALCKLSADPDENVRSAA-ELLDRLL   95 (97)
T ss_pred             -HHHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence             3447788899999999987666 5666654

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.78  E-value=0.014  Score=54.42  Aligned_cols=190  Identities=16%  Similarity=0.166  Sum_probs=123.3

Q ss_pred             ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhh-cCCCH----hHHHHHHHHHHHhccCCcH
Q 043676          131 ALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLV-HSNDE----DVLTYACWSLSYLADGTND  205 (446)
Q Consensus       131 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll-~~~~~----~v~~~~~~~l~~l~~~~~~  205 (446)
                      .+..++.+.....++..+..++.+++.+...-+...  ....++..+..-+ ...+.    ...+...|+...+.-....
T Consensus       190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~  267 (415)
T PF12460_consen  190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHP  267 (415)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCc
Confidence            466777777666678888899999988877642222  3445555555544 22333    3344444555444433332


Q ss_pred             HHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCch--------hhHHHHhcC----ChHHHHHHhccCchHHH
Q 043676          206 KIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDF--------QTQCIINHG----AVPYLLDMLVHNHEEII  273 (446)
Q Consensus       206 ~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~--------~~~~~~~~~----~~~~l~~~l~~~~~~~v  273 (446)
                      ...     .+++.++.++.+  +.+...++..++-+....+.        ..+.+.+..    ++|.+++..+.. +...
T Consensus       268 ~~~-----~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~  339 (415)
T PF12460_consen  268 LAT-----ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEI  339 (415)
T ss_pred             hHH-----HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-Chhh
Confidence            332     456678888876  66778888888888765222        222233322    456666666666 5558


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCC
Q 043676          274 KKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGG  330 (446)
Q Consensus       274 ~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  330 (446)
                      |.....+|+.+..+-|..+-.---..++|.+++-+...+.+++..++.+|..+....
T Consensus       340 k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  340 KSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            888889999998865543322112358999999999899999999999999998764

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.78  E-value=4.6e-05  Score=47.91  Aligned_cols=55  Identities=31%  Similarity=0.458  Sum_probs=47.9

Q ss_pred             HhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHh
Q 043676          186 EDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI  241 (446)
Q Consensus       186 ~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l  241 (446)
                      +.+|..++++|++++...+..... ....+++.|..+|+++++.||..|+++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            578999999999999888877665 4448999999999999999999999999875

...

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=0.053  Score=54.10  Aligned_cols=341  Identities=14%  Similarity=0.127  Sum_probs=187.2

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676            3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN   82 (446)
Q Consensus         3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~   82 (446)
                      .+..|...+++.|..++-.|++.+..+++..+    ..+++ .++...++++...+.+..-.-|+-+|+.++...--.-.
T Consensus       342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp----~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps  416 (1133)
T KOG1943|consen  342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP----PELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS  416 (1133)
T ss_pred             HHHHHHHhccCCcchhhHHHHHHHHHHHccCc----HHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence            46677888889999999999999999998752    12222 34555566555444356666888899999873211111


Q ss_pred             HHHhcCChHHHHHhhCC--------CCHHHHHHHHHHHHHhhCCChHH-HHHHHHcCChHHHHHHhccccchhHHHHHHH
Q 043676           83 VVIDHGAVPIFVKLLSS--------PSDDVREQAVWALGNVAGDSPRC-RDLVLSQGALIPLLAELNEHAKLSMLRNATR  153 (446)
Q Consensus        83 ~~~~~~~i~~L~~~L~~--------~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~  153 (446)
                      .+  ..+++.+++.+.-        ....+|..|+.++|.++...... -+-+.. .....++..-.-+.+..+++.|..
T Consensus       417 ~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~AlFDrevncRRAAsA  493 (1133)
T KOG1943|consen  417 LL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVALFDREVNCRRAASA  493 (1133)
T ss_pred             HH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHhcCchhhHhHHHHH
Confidence            11  1345666665542        34679999999999998543321 011111 112222222125677889999999


Q ss_pred             HHHHhhcCCCCCChhhhhhhHHHHHHhhcCCC---HhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh-cCCCCcc
Q 043676          154 TLSNFCRGKPEPPFDQVRPALPALAQLVHSND---EDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVEL-LGHPSPS  229 (446)
Q Consensus       154 ~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~---~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~l-l~~~~~~  229 (446)
                      ++-......++.     ..+++    ++.+.|   -..+.++-..++.-....+....     .++..++.- +.+=+..
T Consensus       494 AlqE~VGR~~n~-----p~Gi~----Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~-----~~f~~L~t~Kv~HWd~~  559 (1133)
T KOG1943|consen  494 ALQENVGRQGNF-----PHGIS----LISTIDYFSVTNRSNCYLDLCVSIAEFSGYRE-----PVFNHLLTKKVCHWDVK  559 (1133)
T ss_pred             HHHHHhccCCCC-----CCchh----hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHH-----HHHHHHHhcccccccHH
Confidence            988776653221     11122    112111   12222222222221122222222     222223222 4555778


Q ss_pred             chhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHH---HHHHHHH---cC---C
Q 043676          230 VLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNRE---QIQAVID---AG---L  300 (446)
Q Consensus       230 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~---~~~~~~~---~~---~  300 (446)
                      +++.++++|.+|+...++    ......+++++....+. +...+..+..+.+.++.+...   ....+.+   ++   +
T Consensus       560 irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~-~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~i  634 (1133)
T KOG1943|consen  560 IRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSK-DASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSI  634 (1133)
T ss_pred             HHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCC-ChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhh
Confidence            999999999999876654    33456788888888777 777777766666666542111   1111111   12   2


Q ss_pred             hHHHHHHH-hcC-CcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHh
Q 043676          301 IRPIVNLL-QNA-EFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKV  372 (446)
Q Consensus       301 i~~L~~ll-~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~  372 (446)
                      ++.+.... ..+ ..-++...+..+.++... .......+...+.-..+.+.+..++ .++..+.+++..++.-
T Consensus       635 i~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s-~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~  706 (1133)
T KOG1943|consen  635 IPPICDRYFYRGQGTLMRQATLKFIEQLSLS-KDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVST  706 (1133)
T ss_pred             ccHHHHHHhccchHHHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHH
Confidence            33333322 222 234556666677777654 2333333333344445555554444 7788888888877653

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.77  E-value=0.0041  Score=51.54  Aligned_cols=255  Identities=17%  Similarity=0.223  Sum_probs=149.8

Q ss_pred             HHHHHhhcCCC-ChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHH
Q 043676           48 PRFVEFLMRED-YPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV  126 (446)
Q Consensus        48 ~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~  126 (446)
                      ..+.+.|.... ...-+..|+..|.++..  +         +.+..+.+...+.+...+...+.+|+...          
T Consensus         6 ~~i~~~L~~~s~~l~~r~rALf~Lr~l~~--~---------~~i~~i~ka~~d~s~llkhe~ay~LgQ~~----------   64 (289)
T KOG0567|consen    6 ETIGNILVNKSQPLQNRFRALFNLRNLLG--P---------AAIKAITKAFIDDSALLKHELAYVLGQMQ----------   64 (289)
T ss_pred             HHHHHHHcCccHHHHHHHHHHHhhhccCC--h---------HHHHHHHHhcccchhhhccchhhhhhhhc----------
Confidence            33444444422 12445566666666655  1         22556666666655566666666766655          


Q ss_pred             HHcCChHHHHHHhccc-cchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcH
Q 043676          127 LSQGALIPLLAELNEH-AKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTND  205 (446)
Q Consensus       127 ~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~  205 (446)
                       ....++.++..+... ..+-++..+..+|..+. .         ....+.+.++.+++-..+++.+..++..+-.....
T Consensus        65 -~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~---------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~  133 (289)
T KOG0567|consen   65 -DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D---------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDII  133 (289)
T ss_pred             -cchhhHHHHHHhcccccchHHHHHHHHHHHhhc-c---------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcc
Confidence             223567777777432 34556778888888776 2         23456667777666677777766666655422110


Q ss_pred             HH----HHH--------HHhCcHHHHHHhcCC-CCcc-chhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchH
Q 043676          206 KI----QAV--------IEAGVCPRLVELLGH-PSPS-VLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEE  271 (446)
Q Consensus       206 ~~----~~~--------~~~~~~~~l~~ll~~-~~~~-~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  271 (446)
                      ..    ..+        ...+-+..+-..+.+ +.+. -|..|.+.|.|+-.           ...+..+.+-+..+ +.
T Consensus       134 ~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~-----------EeaI~al~~~l~~~-Sa  201 (289)
T KOG0567|consen  134 DKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT-----------EEAINALIDGLADD-SA  201 (289)
T ss_pred             ccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc-----------HHHHHHHHHhcccc-hH
Confidence            00    000        000112222222222 1111 12334444443322           11345566777777 88


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc--CCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHh
Q 043676          272 IIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQN--AEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCD  349 (446)
Q Consensus       272 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~  349 (446)
                      -.|.+++++++.+-+  +.         .++.|.+.|.+  +++.+|..|+.||+.++.   ++         +++.|.+
T Consensus       202 lfrhEvAfVfGQl~s--~~---------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~---e~---------~~~vL~e  258 (289)
T KOG0567|consen  202 LFRHEVAFVFGQLQS--PA---------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD---ED---------CVEVLKE  258 (289)
T ss_pred             HHHHHHHHHHhhccc--hh---------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC---HH---------HHHHHHH
Confidence            999999999999833  32         57777777765  478999999999999974   33         4666788


Q ss_pred             cccCCCHHHHHHHHHHHHHH
Q 043676          350 LLLCSDPEIVTVCLIGLENI  369 (446)
Q Consensus       350 ll~~~~~~~~~~~~~~l~~l  369 (446)
                      .+.++++-+++.|.-+|..+
T Consensus       259 ~~~D~~~vv~esc~valdm~  278 (289)
T KOG0567|consen  259 YLGDEERVVRESCEVALDML  278 (289)
T ss_pred             HcCCcHHHHHHHHHHHHHHH
Confidence            88888888888888777653

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.73  E-value=0.0032  Score=56.64  Aligned_cols=356  Identities=15%  Similarity=0.104  Sum_probs=176.0

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCC---hhhHHHHHhc---
Q 043676           14 DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGT---SENTNVVIDH---   87 (446)
Q Consensus        14 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~---   87 (446)
                      ..+.+.-+.+++|+++.+..+.+..+.-.-..++..+-.++++.+ +.++..++..++.+...+   |+....+-..   
T Consensus       119 ~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d-~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~  197 (728)
T KOG4535|consen  119 SSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKD-VNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSS  197 (728)
T ss_pred             cCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCC-CChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCcc
Confidence            346677788999999988754444444334456677778888998 899999999888887632   2222211000   


Q ss_pred             -----------------CChHHHHHh--------------------------------------hCC--CCHHHHHHHHH
Q 043676           88 -----------------GAVPIFVKL--------------------------------------LSS--PSDDVREQAVW  110 (446)
Q Consensus        88 -----------------~~i~~L~~~--------------------------------------L~~--~~~~v~~~a~~  110 (446)
                                       ..-+.+.+.                                      +..  ....+|-.|+.
T Consensus       198 ~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~q  277 (728)
T KOG4535|consen  198 SNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQ  277 (728)
T ss_pred             ccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHH
Confidence                             000011110                                      000  01233444444


Q ss_pred             HHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC-----CCCCChhhh-hhhHHHHHH-----
Q 043676          111 ALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG-----KPEPPFDQV-RPALPALAQ-----  179 (446)
Q Consensus       111 ~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~~~-~~~~~~l~~-----  179 (446)
                      +|.-++..-.-.+....+  ....+...+ .+..+.++..+..++..+-..     .|....... .+.+-.+.-     
T Consensus       278 vl~~~a~~~~~~~~~~~~--l~RvI~~~~-~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~  354 (728)
T KOG4535|consen  278 VLTLLARYFSMTQAYLME--LGRVICKCM-GEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLP  354 (728)
T ss_pred             HHHHHHHHHHHHHHHHHH--HHHHHHccC-CCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCCh
Confidence            444443221111111111  111112222 455778888888877766432     222211111 121111110     


Q ss_pred             -h-hcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCC
Q 043676          180 -L-VHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGA  257 (446)
Q Consensus       180 -l-l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~  257 (446)
                       . -.+..+..+...+.++.++....-.....-.+.-.+..+.-.-++.+.-++..|.+.++.+.-+.........-...
T Consensus       355 ~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~a  434 (728)
T KOG4535|consen  355 RALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADA  434 (728)
T ss_pred             hhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHH
Confidence             1 11223456666777777765321110000000000011111112233346677888887777665544444445556


Q ss_pred             hHHHHHHhccCchHHHHHHHHHHHHHHhc----C--CHHHHHHHHHcCChHHHHHHHhc---CCcchHHHHHHHHHHhcc
Q 043676          258 VPYLLDMLVHNHEEIIKKEISWIISNITA----G--NREQIQAVIDAGLIRPIVNLLQN---AEFDTKKEAAWAISNATS  328 (446)
Q Consensus       258 ~~~l~~~l~~~~~~~v~~~a~~~l~~l~~----~--~~~~~~~~~~~~~i~~L~~ll~~---~~~~v~~~a~~aL~~l~~  328 (446)
                      ...+...+.+. ....|..++|+++|++.    +  ++.....=+..-.+..++.....   ..++|+.++..+|+|+.+
T Consensus       435 a~~il~sl~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQ  513 (728)
T KOG4535|consen  435 ANAILMSLEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQ  513 (728)
T ss_pred             HHHHHHHhhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH
Confidence            67777778777 78899999999999975    2  21111111111123334433322   357899999999999876


Q ss_pred             CCCHH--HHHHHHHcCChHHHHh-cccCCCHHHHHHHHHHHHHHHHhhh
Q 043676          329 GGTQE--QIKHLVREGCVKPLCD-LLLCSDPEIVTVCLIGLENILKVGE  374 (446)
Q Consensus       329 ~~~~~--~~~~l~~~~~i~~L~~-ll~~~~~~~~~~~~~~l~~l~~~~~  374 (446)
                      .-.+-  ........+.+..+.. ..-...-+++=+++.++.|+|+...
T Consensus       514 vlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a  562 (728)
T KOG4535|consen  514 FLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPA  562 (728)
T ss_pred             HHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcc
Confidence            31100  0001111112222222 1223455788889999999987643

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.70  E-value=0.0092  Score=56.11  Aligned_cols=297  Identities=12%  Similarity=0.111  Sum_probs=154.2

Q ss_pred             HHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHH
Q 043676           48 PRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVL  127 (446)
Q Consensus        48 ~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~  127 (446)
                      ..++...+ ++ +..+..|+..+......-|+..+.     ++..++.+..+.+..||..|+..|..+|.++++....+ 
T Consensus        26 ~~il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-   97 (556)
T PF05918_consen   26 KEILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-   97 (556)
T ss_dssp             HHHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-
T ss_pred             HHHHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-
Confidence            34444444 45 789999999999999978887665     47899999999999999999999999998877655554 


Q ss_pred             HcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc---CCCHhHHHHHHHHHHHhcc-CC
Q 043676          128 SQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH---SNDEDVLTYACWSLSYLAD-GT  203 (446)
Q Consensus       128 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~---~~~~~v~~~~~~~l~~l~~-~~  203 (446)
                          ...|+++| ...++.-...+-.+|..+...++       .+.+..+...+.   ++++.+|+.++..|..=.. -.
T Consensus        98 ----aDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~  165 (556)
T PF05918_consen   98 ----ADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLK  165 (556)
T ss_dssp             ----HHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-
T ss_pred             ----HHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCc
Confidence                45788888 56666666666666666655432       334444554444   5688899999988854331 11


Q ss_pred             cHHHH--HHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcC----CchhhHHHHhcCChHHHHHHhc-----cCchHH
Q 043676          204 NDKIQ--AVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTG----DDFQTQCIINHGAVPYLLDMLV-----HNHEEI  272 (446)
Q Consensus       204 ~~~~~--~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~----~~~~~~~~~~~~~~~~l~~~l~-----~~~~~~  272 (446)
                      .+...  .-.+.-++..+...|.+-...--...+.+|..+-..    .....+.     +++.+.+...     ...+++
T Consensus       166 ~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qe-----Lv~ii~eQa~Ld~~f~~sD~e  240 (556)
T PF05918_consen  166 PELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQE-----LVDIIEEQADLDQPFDPSDPE  240 (556)
T ss_dssp             TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHH-----HHHHHHHHHTTTS---SSSHH
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHH-----HHHHHHHHhccCCCCCCcCHH
Confidence            11111  112223445566677653333333445555555441    2222222     2333433321     111233


Q ss_pred             HHHHHHHHHHH----Hhc--CCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHH
Q 043676          273 IKKEISWIISN----ITA--GNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKP  346 (446)
Q Consensus       273 v~~~a~~~l~~----l~~--~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~  346 (446)
                      .-...+.++..    +..  .+.....++.+ .++|.+-.+    +...+-..+.++..++..........+++ -++..
T Consensus       241 ~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~L~-~i~~~  314 (556)
T PF05918_consen  241 SIDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQLLP-SIFQL  314 (556)
T ss_dssp             HHHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT---------HHHHHHHHHHHHHTT----THHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHHHH-HHHHH
Confidence            33333332222    112  24444444544 577766555    45777888999998888755333333321 13344


Q ss_pred             HHhcccC--CCH----HHHHHHHHHHHHHHHhhhh
Q 043676          347 LCDLLLC--SDP----EIVTVCLIGLENILKVGEA  375 (446)
Q Consensus       347 L~~ll~~--~~~----~~~~~~~~~l~~l~~~~~~  375 (446)
                      |...+-.  ..+    ...++.+.+++++....++
T Consensus       315 L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~  349 (556)
T PF05918_consen  315 LKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPN  349 (556)
T ss_dssp             HHTTS----------HHHHHHHHHHHHHHHTT-TH
T ss_pred             HHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcc
Confidence            4444432  223    3566667777777666554

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.68  E-value=0.011  Score=55.34  Aligned_cols=228  Identities=14%  Similarity=0.134  Sum_probs=144.0

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCC-----CChHHHHHHHHHHHHHcCCChhhHHHHHh
Q 043676           12 WSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRE-----DYPQLQYEAAWVLINIASGTSENTNVVID   86 (446)
Q Consensus        12 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~   86 (446)
                      .+.++.+..+|+++|+|+.... ...+..+.+.|..+.+++.|+..     + .++.....+.|.-++...++.+..+++
T Consensus        42 ~~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~-~d~~Fl~~RLLFLlTa~~~~~~~~L~~  119 (446)
T PF10165_consen   42 ESPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQP-SDVEFLDSRLLFLLTALRPDDRKKLIE  119 (446)
T ss_pred             cCCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCC-hhHHHHHHHHHHHHhcCChhHHHHHHH
Confidence            3567899999999999998875 45567778899999999999886     5 789999999999988877888877775


Q ss_pred             c-CChHHHHHhhCC-----------------CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccc------
Q 043676           87 H-GAVPIFVKLLSS-----------------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEH------  142 (446)
Q Consensus        87 ~-~~i~~L~~~L~~-----------------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~------  142 (446)
                      . +++..+...|..                 .+......++.++.|+....+.... -.....++.++..+...      
T Consensus       120 e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~  198 (446)
T PF10165_consen  120 EHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPS  198 (446)
T ss_pred             HhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCC
Confidence            5 777777775531                 1345567788899999854443221 01222344555444222      


Q ss_pred             --cchhHHHHHHHHHHHhhcCC------------CCCChhhhhhhHHHHHHhhcC----C----CHhHHHHHHHHHHHhc
Q 043676          143 --AKLSMLRNATRTLSNFCRGK------------PEPPFDQVRPALPALAQLVHS----N----DEDVLTYACWSLSYLA  200 (446)
Q Consensus       143 --~~~~~~~~a~~~L~~l~~~~------------~~~~~~~~~~~~~~l~~ll~~----~----~~~v~~~~~~~l~~l~  200 (446)
                        +......+++.+|.++--..            ...........+..++.+|..    .    -.+.....+.+|..++
T Consensus       199 ~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~  278 (446)
T PF10165_consen  199 SPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLA  278 (446)
T ss_pred             CCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHH
Confidence              23456778888888773211            000111223445555555541    1    2467778888888888


Q ss_pred             cCCcHHHHHHHHhCc-----------------HHHHHHhcCCCCccchhHHHHHHHHhhc
Q 043676          201 DGTNDKIQAVIEAGV-----------------CPRLVELLGHPSPSVLTPALRTVGNIVT  243 (446)
Q Consensus       201 ~~~~~~~~~~~~~~~-----------------~~~l~~ll~~~~~~~~~~a~~~l~~l~~  243 (446)
                      .......+ .++..+                 -..|++++.++.+.++..+...+..||.
T Consensus       279 ~~~~~~Rk-~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~  337 (446)
T PF10165_consen  279 RAAREVRK-YLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCK  337 (446)
T ss_pred             HhcHHHHH-HHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence            77643333 333333                 3345555555555555555555555554

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.67  E-value=0.00015  Score=42.34  Aligned_cols=39  Identities=38%  Similarity=0.757  Sum_probs=35.9

Q ss_pred             hhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 043676           78 SENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVA  116 (446)
Q Consensus        78 ~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~  116 (446)
                      ++.+..+++.|+++.|++++.+++++++..++|+|.|++
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            347788889999999999999999999999999999997

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.66  E-value=0.013  Score=58.82  Aligned_cols=242  Identities=12%  Similarity=0.111  Sum_probs=150.9

Q ss_pred             HHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhc--CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-HHHHHHH
Q 043676           51 VEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDH--GAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP-RCRDLVL  127 (446)
Q Consensus        51 ~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~  127 (446)
                      .....+.....+|..+.++|..++.. +.......+.  .+...|.+-+++.....+...+.+|..|....+ +..+.+.
T Consensus       659 ~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~  737 (1176)
T KOG1248|consen  659 DPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP  737 (1176)
T ss_pred             hHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            34444443379999999999999984 3322222111  233445555555666777777888887775444 3333333


Q ss_pred             HcCChHHHHHHhccccchhHHHHHHHHHHHhh--cCC----CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhcc
Q 043676          128 SQGALIPLLAELNEHAKLSMLRNATRTLSNFC--RGK----PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLAD  201 (446)
Q Consensus       128 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~--~~~----~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~  201 (446)
                      .  .|+.++-.+ ++.+...++++..+|..++  ...    ..........+++.+...+-.+........+-++..+..
T Consensus       738 k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~  814 (1176)
T KOG1248|consen  738 K--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ  814 (1176)
T ss_pred             H--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence            3  344444445 7778888999999998888  221    122234455666666655554444444443555555553


Q ss_pred             CCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHH
Q 043676          202 GTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWII  281 (446)
Q Consensus       202 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l  281 (446)
                      ........-.-.++++.+.-+|.+++++++..|+..+..++...+...-......+++.+..++++. ...+|..+-..+
T Consensus       815 e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~Ll  893 (1176)
T KOG1248|consen  815 EFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLLL  893 (1176)
T ss_pred             HHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHHH
Confidence            3222222222236777788888999999999999999999987776544333445788888888777 788888888888


Q ss_pred             HHHhc-CCHHHHHHHHH
Q 043676          282 SNITA-GNREQIQAVID  297 (446)
Q Consensus       282 ~~l~~-~~~~~~~~~~~  297 (446)
                      -.++. ...+..+.+..
T Consensus       894 ekLirkfg~~eLe~~~p  910 (1176)
T KOG1248|consen  894 EKLIRKFGAEELESFLP  910 (1176)
T ss_pred             HHHHHHhCHHHHHhhCH
Confidence            87776 34444444443

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.64  E-value=0.041  Score=48.97  Aligned_cols=202  Identities=8%  Similarity=0.049  Sum_probs=141.9

Q ss_pred             hhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHH-----HHHHHH--hCcHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 043676          171 RPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDK-----IQAVIE--AGVCPRLVELLGHPSPSVLTPALRTVGNIVT  243 (446)
Q Consensus       171 ~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~-----~~~~~~--~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~  243 (446)
                      .+.+..|+..+..-+-+.+..+..+..++.....+.     ...+..  ..++..|+..-  +++++...+...|...+.
T Consensus        75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRec~k  152 (335)
T PF08569_consen   75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRECIK  152 (335)
T ss_dssp             HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHHHTT
T ss_pred             hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHHHHh
Confidence            567888888888889999999999999988653322     222222  23444444443  345555566666666665


Q ss_pred             CCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcC---ChHHHHHHHhcCCcchHHHHH
Q 043676          244 GDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAG---LIRPIVNLLQNAEFDTKKEAA  320 (446)
Q Consensus       244 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~---~i~~L~~ll~~~~~~v~~~a~  320 (446)
                       .+...+.++....+..+.+....+ ..++...|..++..+....+.....++..+   ++.....++.+++.-+|..++
T Consensus       153 -~e~l~~~iL~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqsl  230 (335)
T PF08569_consen  153 -HESLAKIILYSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSL  230 (335)
T ss_dssp             -SHHHHHHHHTSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred             -hHHHHHHHhCcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhH
Confidence             566777888888889999999988 999999999999998776676666666543   577788899999999999999


Q ss_pred             HHHHHhccCCC-HH-HHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhh
Q 043676          321 WAISNATSGGT-QE-QIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAE  376 (446)
Q Consensus       321 ~aL~~l~~~~~-~~-~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~  376 (446)
                      ..|+.+..... .. ..+++.+..-+..++.+|.+++..++..|..++.-++....+.
T Consensus       231 kLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~  288 (335)
T PF08569_consen  231 KLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKP  288 (335)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-B
T ss_pred             HHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCC
Confidence            99999986321 11 1233334455888999999999999999999998877765443

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.61  E-value=0.024  Score=47.16  Aligned_cols=253  Identities=15%  Similarity=0.177  Sum_probs=152.8

Q ss_pred             HHHHHhhcC--CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676            5 PALVAGVWS--DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN   82 (446)
Q Consensus         5 ~~l~~~l~s--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~   82 (446)
                      ..+.+.|..  .-..-++.|+..|+++...            +.+..+.+...+++ ...+...+.+|+....       
T Consensus         6 ~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~------------~~i~~i~ka~~d~s-~llkhe~ay~LgQ~~~-------   65 (289)
T KOG0567|consen    6 ETIGNILVNKSQPLQNRFRALFNLRNLLGP------------AAIKAITKAFIDDS-ALLKHELAYVLGQMQD-------   65 (289)
T ss_pred             HHHHHHHcCccHHHHHHHHHHHhhhccCCh------------HHHHHHHHhcccch-hhhccchhhhhhhhcc-------
Confidence            344444443  3345677788777776543            12555555555555 5777788888888765       


Q ss_pred             HHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676           83 VVIDHGAVPIFVKLLSS--PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR  160 (446)
Q Consensus        83 ~~~~~~~i~~L~~~L~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  160 (446)
                          ...++.++..|.+  ..+-+|..|..+|+++.  .+.         .++.+-+.. +++-..+++.+..++..+-.
T Consensus        66 ----~~Av~~l~~vl~desq~pmvRhEAaealga~~--~~~---------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~  129 (289)
T KOG0567|consen   66 ----EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG--DPE---------SLEILTKYI-KDPCKEVRETCELAIKRLEW  129 (289)
T ss_pred             ----chhhHHHHHHhcccccchHHHHHHHHHHHhhc--chh---------hHHHHHHHh-cCCccccchHHHHHHHHHHH
Confidence                3468888888876  45788889999999887  222         233344444 55656666666666655533


Q ss_pred             CCCCCC-------------hhhhhhhHHHHHHhhcCC-CHhH-HHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC
Q 043676          161 GKPEPP-------------FDQVRPALPALAQLVHSN-DEDV-LTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH  225 (446)
Q Consensus       161 ~~~~~~-------------~~~~~~~~~~l~~ll~~~-~~~v-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~  225 (446)
                      ......             ......-+..+-..+.+. .+.. ++.+...|.|+-.  +         ..+..+++-+..
T Consensus       130 ~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--E---------eaI~al~~~l~~  198 (289)
T KOG0567|consen  130 KDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--E---------EAINALIDGLAD  198 (289)
T ss_pred             hhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--H---------HHHHHHHHhccc
Confidence            220000             001112233333333322 2222 3344444544321  1         224455666666


Q ss_pred             CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhcc-CchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHH
Q 043676          226 PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVH-NHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPI  304 (446)
Q Consensus       226 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L  304 (446)
                      ++.-.|..+..++++|-+..           .++.+.+.|.+ .+.+.+|.+|+.+|+.++  +++         .++.|
T Consensus       199 ~SalfrhEvAfVfGQl~s~~-----------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa--~e~---------~~~vL  256 (289)
T KOG0567|consen  199 DSALFRHEVAFVFGQLQSPA-----------AIPSLIKVLLDETEHPMVRHEAAEALGAIA--DED---------CVEVL  256 (289)
T ss_pred             chHHHHHHHHHHHhhccchh-----------hhHHHHHHHHhhhcchHHHHHHHHHHHhhc--CHH---------HHHHH
Confidence            77778889999999886522           35666666643 237899999999999984  344         56677


Q ss_pred             HHHHhcCCcchHHHHHHHHHHh
Q 043676          305 VNLLQNAEFDTKKEAAWAISNA  326 (446)
Q Consensus       305 ~~ll~~~~~~v~~~a~~aL~~l  326 (446)
                      .+.+.+.++-+++.+..+|.-.
T Consensus       257 ~e~~~D~~~vv~esc~valdm~  278 (289)
T KOG0567|consen  257 KEYLGDEERVVRESCEVALDML  278 (289)
T ss_pred             HHHcCCcHHHHHHHHHHHHHHH
Confidence            7888888888888888777654

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.61  E-value=0.0034  Score=50.67  Aligned_cols=93  Identities=19%  Similarity=0.222  Sum_probs=76.5

Q ss_pred             CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHH
Q 043676          185 DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDM  264 (446)
Q Consensus       185 ~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~  264 (446)
                      ++.+|..++.+++.++...+...+     ..++.+...|.++++.+|..|+.++..|...+.-.    .+..++..++..
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~   71 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKL   71 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHH
Confidence            578999999999999987775554     67899999999999999999999999998744221    123345778888


Q ss_pred             hccCchHHHHHHHHHHHHHHhcC
Q 043676          265 LVHNHEEIIKKEISWIISNITAG  287 (446)
Q Consensus       265 l~~~~~~~v~~~a~~~l~~l~~~  287 (446)
                      +.++ +++++..|..++..+...
T Consensus        72 l~D~-~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   72 LVDE-NPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HcCC-CHHHHHHHHHHHHHHHHh
Confidence            8888 999999999999999764

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.59  E-value=0.0034  Score=48.26  Aligned_cols=131  Identities=12%  Similarity=0.123  Sum_probs=102.9

Q ss_pred             HHHHHhCcHHHHHHhcCCCCc------cchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCc-hHHHHHHHHHH
Q 043676          208 QAVIEAGVCPRLVELLGHPSP------SVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNH-EEIIKKEISWI  280 (446)
Q Consensus       208 ~~~~~~~~~~~l~~ll~~~~~------~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~v~~~a~~~  280 (446)
                      ..++..+++..|++++.++..      +....++.++..|..+. ......+...++.+++....... +..+...|...
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence            457788999999999988653      55666888888888764 33344566678888888887653 57899999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHH
Q 043676          281 ISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLV  339 (446)
Q Consensus       281 l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~  339 (446)
                      |-+++..++.....+.+.=-++.|+..++..+++++.+|...+..+..+.+++.++.+.
T Consensus        84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~  142 (160)
T PF11841_consen   84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIA  142 (160)
T ss_pred             HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence            99998887776666666666999999999999999999999999998887766665533

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.58  E-value=0.003  Score=51.03  Aligned_cols=92  Identities=16%  Similarity=0.161  Sum_probs=72.8

Q ss_pred             hHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCC-hHHHHHH
Q 043676           60 PQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGA-LIPLLAE  138 (446)
Q Consensus        60 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~-i~~l~~~  138 (446)
                      +.+|..++.+++.++...+...+.     .++.+...|+++++.+|..|+.++.+|......     .-.|. +..++..
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~~ve~-----~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i-----k~k~~l~~~~l~~   71 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPNLVEP-----YLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI-----KVKGQLFSRILKL   71 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHh-----HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce-----eehhhhhHHHHHH
Confidence            789999999999999855543332     478999999999999999999999999854321     11222 3677777


Q ss_pred             hccccchhHHHHHHHHHHHhhcCC
Q 043676          139 LNEHAKLSMLRNATRTLSNFCRGK  162 (446)
Q Consensus       139 l~~~~~~~~~~~a~~~L~~l~~~~  162 (446)
                      + .+++++++..|..++..+....
T Consensus        72 l-~D~~~~Ir~~A~~~~~e~~~~~   94 (178)
T PF12717_consen   72 L-VDENPEIRSLARSFFSELLKKR   94 (178)
T ss_pred             H-cCCCHHHHHHHHHHHHHHHHhc
Confidence            7 7889999999999999998873

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.54  E-value=0.019  Score=50.96  Aligned_cols=203  Identities=11%  Similarity=0.103  Sum_probs=143.2

Q ss_pred             HHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchh-----hHHHHh--cCChHHHHHHhccCchHHHHHHHHHH
Q 043676          208 QAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQ-----TQCIIN--HGAVPYLLDMLVHNHEEIIKKEISWI  280 (446)
Q Consensus       208 ~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~-----~~~~~~--~~~~~~l~~~l~~~~~~~v~~~a~~~  280 (446)
                      +.++..+++..|+..|..-+.+.|..+..+.+++.......     ...+..  ..++..++....   ++++-..+...
T Consensus        70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~---~~dial~~g~m  146 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE---NPDIALNCGDM  146 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG---STTTHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc---CccccchHHHH
Confidence            34667799999999999989999999999999998765333     333332  234444444443   34555666666


Q ss_pred             HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHc---CChHHHHhcccCCCHH
Q 043676          281 ISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVRE---GCVKPLCDLLLCSDPE  357 (446)
Q Consensus       281 l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~---~~i~~L~~ll~~~~~~  357 (446)
                      |..++. .+...+.+.....+..+.+.++.++.++...|..++..+... .+.....+...   .++.....++.+++.-
T Consensus       147 lRec~k-~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~-hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYv  224 (335)
T PF08569_consen  147 LRECIK-HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTR-HKKLVAEFLSNNYDRFFQKYNKLLESSNYV  224 (335)
T ss_dssp             HHHHTT-SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHCT-SSHH
T ss_pred             HHHHHh-hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHccCCCeE
Confidence            666654 466677788888999999999999999999999999998765 34554444443   3467788899999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 043676          358 IVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYW  425 (446)
Q Consensus       358 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  425 (446)
                      ++..++..|..++-...+..          ...+.+.+..-+..+..++.+++..++-.|-.+..-|.
T Consensus       225 tkrqslkLL~ellldr~n~~----------vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFV  282 (335)
T PF08569_consen  225 TKRQSLKLLGELLLDRSNFN----------VMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFV  282 (335)
T ss_dssp             HHHHHHHHHHHHHHSGGGHH----------HHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH
T ss_pred             eehhhHHHHHHHHHchhHHH----------HHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHH
Confidence            99999999999997766643          23466666667777888888888888877766655443

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.53  E-value=0.0013  Score=63.74  Aligned_cols=152  Identities=18%  Similarity=0.143  Sum_probs=113.9

Q ss_pred             CChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh-hhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHH
Q 043676          130 GALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPF-DQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQ  208 (446)
Q Consensus       130 ~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~  208 (446)
                      .++|.+++.+ .......+...+.+|++...+-|.... ......+|.|.+.|.-+|..++...+.++.-+....+....
T Consensus       867 ~ivP~l~~~~-~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t  945 (1030)
T KOG1967|consen  867 DIVPILVSKF-ETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT  945 (1030)
T ss_pred             hhHHHHHHHh-ccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence            4678888888 455666778888888888876654332 23477889999999999999999999999887755543333


Q ss_pred             HHHHhCcHHHHHHhcCCCC---ccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHH
Q 043676          209 AVIEAGVCPRLVELLGHPS---PSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNI  284 (446)
Q Consensus       209 ~~~~~~~~~~l~~ll~~~~---~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l  284 (446)
                      ..+. -++|.+..+=.+++   ..+|..|+.++..|+...|...-......++..+...|.++ ..-+|++|+.+=.+.
T Consensus       946 ~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen  946 EHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQNW 1022 (1030)
T ss_pred             HHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhhh
Confidence            2332 56777777766655   46899999999999986665554455667889999999999 889999998765543

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.50  E-value=0.17  Score=52.60  Aligned_cols=143  Identities=10%  Similarity=0.049  Sum_probs=93.8

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV   83 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   83 (446)
                      +..++..|..+.+.+|-.|+++|..+...+..--....++.++    -.-+.++. ..||+.|+..++......++....
T Consensus       818 Lk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~V----h~R~~Dss-asVREAaldLvGrfvl~~~e~~~q  892 (1692)
T KOG1020|consen  818 LKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAV----HGRLNDSS-ASVREAALDLVGRFVLSIPELIFQ  892 (1692)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHH----HHhhccch-hHHHHHHHHHHhhhhhccHHHHHH
Confidence            3456667777789999999999999988752211222233232    22334455 699999999999877656665544


Q ss_pred             HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcc--ccchhHHHHHHHHHHHhhcC
Q 043676           84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE--HAKLSMLRNATRTLSNFCRG  161 (446)
Q Consensus        84 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--~~~~~~~~~a~~~L~~l~~~  161 (446)
                      ..     ..+..-+.++...||..++..+..+|...|.....      ...+.+++.+  +....++.-+..++.++--.
T Consensus       893 yY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i------~~~cakmlrRv~DEEg~I~kLv~etf~klWF~  961 (1692)
T KOG1020|consen  893 YY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKI------VDMCAKMLRRVNDEEGNIKKLVRETFLKLWFT  961 (1692)
T ss_pred             HH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH------HHHHHHHHHHhccchhHHHHHHHHHHHHHhcc
Confidence            43     44555666788999999999999999877754222      2344444433  22334777777777776555


Q ss_pred             C
Q 043676          162 K  162 (446)
Q Consensus       162 ~  162 (446)
                      +
T Consensus       962 p  962 (1692)
T KOG1020|consen  962 P  962 (1692)
T ss_pred             C
Confidence            4

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.47  E-value=0.0041  Score=60.00  Aligned_cols=227  Identities=12%  Similarity=0.096  Sum_probs=144.5

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHH
Q 043676           47 VPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV  126 (446)
Q Consensus        47 ~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~  126 (446)
                      ....+..+.++. +-+|..+++.+..+.. ..+....+...+++...+..|++.++-+--+|+..+..+|..-|+     
T Consensus       729 ~qeai~sl~d~q-vpik~~gL~~l~~l~e-~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e-----  801 (982)
T KOG4653|consen  729 LQEAISSLHDDQ-VPIKGYGLQMLRHLIE-KRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE-----  801 (982)
T ss_pred             HHHHHHHhcCCc-ccchHHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch-----
Confidence            334445556666 7899999999999998 446666677789999999999999999999999988888854332     


Q ss_pred             HHcCChHHHHHHhcccc---chhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCC
Q 043676          127 LSQGALIPLLAELNEHA---KLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGT  203 (446)
Q Consensus       127 ~~~~~i~~l~~~l~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~  203 (446)
                         .+++.+........   .++.+-.+-.++.++......-.......++...+...++++...|..++..+++++...
T Consensus       802 ---~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~  878 (982)
T KOG4653|consen  802 ---DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLL  878 (982)
T ss_pred             ---hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHH
Confidence               34566665332211   123344444666666655422222333456677777778888888999999999999654


Q ss_pred             cHHHHHHHHhCcHHHHHHhcCC-CCccchhHHHHHHHHhhcCCchhhHHHHhc---CChHHHHHHhccCchHHHHHHHHH
Q 043676          204 NDKIQAVIEAGVCPRLVELLGH-PSPSVLTPALRTVGNIVTGDDFQTQCIINH---GAVPYLLDMLVHNHEEIIKKEISW  279 (446)
Q Consensus       204 ~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~---~~~~~l~~~l~~~~~~~v~~~a~~  279 (446)
                      .......+. ..+..++.+.+. ++..+|++|+..+..+..+.....-.+...   .....+........+..++..|..
T Consensus       879 a~~vsd~~~-ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql  957 (982)
T KOG4653|consen  879 AFQVSDFFH-EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQL  957 (982)
T ss_pred             hhhhhHHHH-HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            433332222 444555555554 567789999999999887665433333211   223333344433324555555555


Q ss_pred             HHHHH
Q 043676          280 IISNI  284 (446)
Q Consensus       280 ~l~~l  284 (446)
                      ++-.+
T Consensus       958 ~leei  962 (982)
T KOG4653|consen  958 CLEEI  962 (982)
T ss_pred             HHHHH
Confidence            54433

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.46  E-value=0.0073  Score=46.50  Aligned_cols=126  Identities=15%  Similarity=0.103  Sum_probs=100.1

Q ss_pred             HHHHHHcCChHHHHHHhccccc-----hhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCC--CHhHHHHHHHH
Q 043676          123 RDLVLSQGALIPLLAELNEHAK-----LSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSN--DEDVLTYACWS  195 (446)
Q Consensus       123 ~~~~~~~~~i~~l~~~l~~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~v~~~~~~~  195 (446)
                      ...+...+++..|++++.+...     .++...++.++..|.++...........++..++.+....  |..+...++..
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence            4566788899999999955442     4778889999999988864444455578888888888754  68999999999


Q ss_pred             HHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchh
Q 043676          196 LSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQ  248 (446)
Q Consensus       196 l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~  248 (446)
                      |-++..+++.....+.+.=.++.|+..|+..++.++..|+..+..|....++.
T Consensus        84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~  136 (160)
T PF11841_consen   84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS  136 (160)
T ss_pred             HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence            99999988877776666667899999999999999999988888776554443

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.46  E-value=0.00036  Score=40.63  Aligned_cols=38  Identities=50%  Similarity=0.719  Sum_probs=34.6

Q ss_pred             HHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhc
Q 043676          290 EQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNAT  327 (446)
Q Consensus       290 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  327 (446)
                      +....+.+.|+++.|++++.+++++++..++++|.|++
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            35677889999999999999889999999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.42  E-value=0.0056  Score=61.19  Aligned_cols=163  Identities=13%  Similarity=0.158  Sum_probs=125.0

Q ss_pred             HHHHHHhhcCC-CCCChhhhhhhHHHHHHhhcC----CCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC-C
Q 043676          152 TRTLSNFCRGK-PEPPFDQVRPALPALAQLVHS----NDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLG-H  225 (446)
Q Consensus       152 ~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~----~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~-~  225 (446)
                      ..++..+|+.. -.........+.|.++...++    ++|+++..|.-+++.++.-+.....     .-++.|+..+. +
T Consensus       898 ~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeks  972 (1251)
T KOG0414|consen  898 ADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKS  972 (1251)
T ss_pred             HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcC
Confidence            33444555443 112344556788888888854    4799999999999998876654444     55688899888 6


Q ss_pred             CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHH
Q 043676          226 PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIV  305 (446)
Q Consensus       226 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~  305 (446)
                      +++.+|.++.-+++.++...+...+.     .-+.+...|.++ ++.+|+.|..+++++...+.     +--.|.+..+.
T Consensus       973 p~p~IRsN~VvalgDlav~fpnlie~-----~T~~Ly~rL~D~-~~~vRkta~lvlshLILndm-----iKVKGql~eMA 1041 (1251)
T KOG0414|consen  973 PSPRIRSNLVVALGDLAVRFPNLIEP-----WTEHLYRRLRDE-SPSVRKTALLVLSHLILNDM-----IKVKGQLSEMA 1041 (1251)
T ss_pred             CCceeeecchheccchhhhcccccch-----hhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhh-----hHhcccHHHHH
Confidence            89999999999999999877765543     457789999999 99999999999999976422     22358899999


Q ss_pred             HHHhcCCcchHHHHHHHHHHhccCC
Q 043676          306 NLLQNAEFDTKKEAAWAISNATSGG  330 (446)
Q Consensus       306 ~ll~~~~~~v~~~a~~aL~~l~~~~  330 (446)
                      .++.+++..++.-|-.....++..+
T Consensus      1042 ~cl~D~~~~IsdlAk~FF~Els~k~ 1066 (1251)
T KOG0414|consen 1042 LCLEDPNAEISDLAKSFFKELSSKG 1066 (1251)
T ss_pred             HHhcCCcHHHHHHHHHHHHHhhhcc
Confidence            9999999999999887777777654

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.36  E-value=0.0019  Score=45.70  Aligned_cols=68  Identities=18%  Similarity=0.312  Sum_probs=57.8

Q ss_pred             chhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhc-cCchHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043676          230 VLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLV-HNHEEIIKKEISWIISNITAGNREQIQAVID  297 (446)
Q Consensus       230 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~  297 (446)
                      .+...+.+|+|++..++.....+.+.++++.+++.-. ++.+|.+|+.|.+++.|++.+++++...+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            3567889999999999999999999999999988753 3337999999999999999999988776654

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.34  E-value=0.045  Score=49.77  Aligned_cols=260  Identities=13%  Similarity=0.099  Sum_probs=136.6

Q ss_pred             hCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh-hhhhhHH
Q 043676           97 LSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFD-QVRPALP  175 (446)
Q Consensus        97 L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~~~  175 (446)
                      ..+++..+|..|++.|+|.++..|.-.... ..-.+..++.-|.+..+.+++-.+..+|..+.......... ..-++.-
T Consensus       267 a~dp~a~~r~~a~r~L~~~as~~P~kv~th-~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ial  345 (533)
T KOG2032|consen  267 ATDPSAKSRGMACRGLGNTASGAPDKVRTH-KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIAL  345 (533)
T ss_pred             ccCchhHHHHHHHHHHHHHhccCcHHHHHh-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHH
Confidence            345788999999999999998855322221 22246677777767778899999999998887765332222 2244555


Q ss_pred             HHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCc---HHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHH
Q 043676          176 ALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGV---CPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCI  252 (446)
Q Consensus       176 ~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~---~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~  252 (446)
                      .+..++.+.+++.+..+...++.++.......+.+....+   ...++-.+.++++. ...||+.....+..+- .++..
T Consensus       346 rlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~-va~ACr~~~~~c~p~l-~rke~  423 (533)
T KOG2032|consen  346 RLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPY-VARACRSELRTCYPNL-VRKEL  423 (533)
T ss_pred             HHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChH-HHHHHHHHHHhcCchh-HHHHH
Confidence            6777888999999999999999888443322222222122   22333334444443 3456666655554221 11111


Q ss_pred             HhcCChHHHHHHhccCchHHHHHH-HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCC
Q 043676          253 INHGAVPYLLDMLVHNHEEIIKKE-ISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGT  331 (446)
Q Consensus       253 ~~~~~~~~l~~~l~~~~~~~v~~~-a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  331 (446)
                        .++++...    +..-...+.. .-| ...+....++....+..     ...-++++.-+.++..+...-.++..+-.
T Consensus       424 --~~~~q~~l----d~~~~~~q~Fyn~~-c~~L~~i~~d~l~~~~t-----~~~~~f~sswe~vr~aavl~t~~~vd~l~  491 (533)
T KOG2032|consen  424 --YHLFQESL----DTDMARFQAFYNQW-CIQLNHIHPDILMLLLT-----EDQHIFSSSWEQVREAAVLKTTRSVDSLV  491 (533)
T ss_pred             --HHHHhhhh----HHhHHHHHHHHHHH-HHHHhhhCHHHHHHHHH-----hchhheecchHHHHHHHHHHHHHHHHHhH
Confidence              11222111    1101111111 111 11111112222111111     11122222233455555444444444333


Q ss_pred             HHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHH
Q 043676          332 QEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILK  371 (446)
Q Consensus       332 ~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~  371 (446)
                      +......--......+..+..++-|+++..+..++..+..
T Consensus       492 ~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~  531 (533)
T KOG2032|consen  492 RAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV  531 (533)
T ss_pred             HHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence            3444333333345666777788889999999999887653

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.34  E-value=0.041  Score=52.32  Aligned_cols=107  Identities=19%  Similarity=0.179  Sum_probs=79.4

Q ss_pred             hhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcC-Cch
Q 043676          169 QVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTG-DDF  247 (446)
Q Consensus       169 ~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~-~~~  247 (446)
                      ...+.+..++....+.+..||..++..|..+.......-..+++ ++...+..-+.+..+.||..|+.+|+.+-.. .++
T Consensus        82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn-~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de  160 (892)
T KOG2025|consen   82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFN-KLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE  160 (892)
T ss_pred             HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHH-HHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence            44666667777777889999999999999998754433333333 7778888888899999999999999998732 222


Q ss_pred             hhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHH
Q 043676          248 QTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIIS  282 (446)
Q Consensus       248 ~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~  282 (446)
                      .      ..+...+..+++..++++||..|+..+.
T Consensus       161 e------~~v~n~l~~liqnDpS~EVRRaaLsnI~  189 (892)
T KOG2025|consen  161 E------CPVVNLLKDLIQNDPSDEVRRAALSNIS  189 (892)
T ss_pred             c------ccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence            2      2356778888887768999998765544

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.33  E-value=0.072  Score=48.52  Aligned_cols=151  Identities=13%  Similarity=0.127  Sum_probs=88.1

Q ss_pred             hhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCC--chh
Q 043676          171 RPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGD--DFQ  248 (446)
Q Consensus       171 ~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~--~~~  248 (446)
                      ...+..+..-..+++..++..+++.|++.+...++........-+...+..+.+..+.+|...++.+|..+...-  ...
T Consensus       257 ~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l  336 (533)
T KOG2032|consen  257 GSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL  336 (533)
T ss_pred             HHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch
Confidence            333444444445678899999999999999987777765555333333444445566788888888887776421  111


Q ss_pred             hHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc-CCHHHHHHHHH--cCChHHHHHHHhcCCcchHHHHHHHHHH
Q 043676          249 TQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA-GNREQIQAVID--AGLIRPIVNLLQNAEFDTKKEAAWAISN  325 (446)
Q Consensus       249 ~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~--~~~i~~L~~ll~~~~~~v~~~a~~aL~~  325 (446)
                      ...+  -.+.-.+..+..+. ++++|..|...++.++. ........+.+  .+-..++.-.+++.++.+-. |+.....
T Consensus       337 ~~~~--l~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~~~~  412 (533)
T KOG2032|consen  337 ESYL--LNIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRSELR  412 (533)
T ss_pred             hhhc--hhHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HHHHHHH
Confidence            1111  12344566777777 88999999888888865 11111222221  12233344445556665543 3334333

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.33  E-value=0.004  Score=59.63  Aligned_cols=213  Identities=14%  Similarity=0.094  Sum_probs=142.9

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhH
Q 043676            2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENT   81 (446)
Q Consensus         2 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~   81 (446)
                      |....|+.+..-..+..++....+|...........      ...++.+...++......-...++.++.|+++.+...+
T Consensus       504 ~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~------~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r  577 (748)
T KOG4151|consen  504 GGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS------YEVVKPLDSALHNDEKGLENFEALEALTNLASISESDR  577 (748)
T ss_pred             cHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch------hhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhH
Confidence            345566666666677778887777772222221111      14566666666655423446778899999999888888


Q ss_pred             HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHc-CChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676           82 NVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQ-GALIPLLAELNEHAKLSMLRNATRTLSNFCR  160 (446)
Q Consensus        82 ~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  160 (446)
                      ..+.+.-.++.+-.++...++..+..++..+.||....--+...+.+. ...+.....+ ...++.....++.++..++.
T Consensus       578 ~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~-e~~~E~~~lA~a~a~a~I~s  656 (748)
T KOG4151|consen  578 QKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNL-EVADEKFELAGAGALAAITS  656 (748)
T ss_pred             HHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHH-HhhhhHHhhhccccccchhh
Confidence            888877777777788888999999999999999996655555555553 3344444444 45666777777766664444


Q ss_pred             CC-CCCC-hhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHH
Q 043676          161 GK-PEPP-FDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVE  221 (446)
Q Consensus       161 ~~-~~~~-~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~  221 (446)
                      .. .... ..........+..++.+.+++++...+..+.++.....+....+++...++.+..
T Consensus       657 v~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~  719 (748)
T KOG4151|consen  657 VVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSG  719 (748)
T ss_pred             cchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHH
Confidence            33 1112 4455677788889999999999999999998876655555555555555444433

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.33  E-value=0.022  Score=55.26  Aligned_cols=220  Identities=10%  Similarity=0.064  Sum_probs=143.8

Q ss_pred             cccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHH
Q 043676          141 EHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLV  220 (446)
Q Consensus       141 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~  220 (446)
                      .++.+.++..++..+..+.+...........+++......+++.|+-+--+++..+..+|.-.++        .+++.+.
T Consensus       737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e--------~il~dL~  808 (982)
T KOG4653|consen  737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE--------DILPDLS  808 (982)
T ss_pred             cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch--------hhHHHHH
Confidence            34556789999999999999765666677789999999999999999999999988888765443        5556666


Q ss_pred             Hh-cCC---CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 043676          221 EL-LGH---PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVI  296 (446)
Q Consensus       221 ~l-l~~---~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~  296 (446)
                      .. ...   ...+.+...-.++.+++....+......+ -++..++...+++ +...|..++..++++|.........++
T Consensus       809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep-d~~~RaSS~a~lg~Lcq~~a~~vsd~~  886 (982)
T KOG4653|consen  809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP-DHEFRASSLANLGQLCQLLAFQVSDFF  886 (982)
T ss_pred             HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc-hHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence            63 322   22345555667777777654444333333 4677788888877 888999999999999863222222211


Q ss_pred             HcCChHHHHHHHh-cCCcchHHHHHHHHHHhccCCCHHHHHHH--HHcCChHHHHhcccC-CCHHHHHHHHHHHHHHHH
Q 043676          297 DAGLIRPIVNLLQ-NAEFDTKKEAAWAISNATSGGTQEQIKHL--VREGCVKPLCDLLLC-SDPEIVTVCLIGLENILK  371 (446)
Q Consensus       297 ~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l--~~~~~i~~L~~ll~~-~~~~~~~~~~~~l~~l~~  371 (446)
                      - .++..++.+.+ ++.+.+|+.|+..+..+..+.+.+....+  ...+....+...... ++..++..+..++..+-.
T Consensus       887 ~-ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a  964 (982)
T KOG4653|consen  887 H-EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQA  964 (982)
T ss_pred             H-HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence            1 24555555555 45788999999999999876554444332  111234444444433 344455555555555433

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.29  E-value=0.0016  Score=47.35  Aligned_cols=70  Identities=19%  Similarity=0.332  Sum_probs=59.3

Q ss_pred             ChHHHHhcc-cCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHH
Q 043676          343 CVKPLCDLL-LCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF  421 (446)
Q Consensus       343 ~i~~L~~ll-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l  421 (446)
                      ++..|+++| .+.|+.+...|+.=|..+++..+..             +..+.+.|+-+.+.+|+++++++|+..|..++
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-------------r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~av  110 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-------------RNIIEKLGAKERVMELMNHEDPEVRYEALLAV  110 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-------------HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhH-------------HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHH
Confidence            477888888 4557888889999999999998776             58889999999999999999999999999998


Q ss_pred             HHhc
Q 043676          422 KTYW  425 (446)
Q Consensus       422 ~~~~  425 (446)
                      +.+.
T Consensus       111 Qklm  114 (119)
T PF11698_consen  111 QKLM  114 (119)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.28  E-value=0.019  Score=55.20  Aligned_cols=220  Identities=14%  Similarity=0.104  Sum_probs=143.9

Q ss_pred             HHHHHHcCChHHHHHHhccccchhHHHHHHHHHHH-hhcCCCCCChhhhhhhHHHHHHhhcCC-CHhHHHHHHHHHHHhc
Q 043676          123 RDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSN-FCRGKPEPPFDQVRPALPALAQLVHSN-DEDVLTYACWSLSYLA  200 (446)
Q Consensus       123 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~~~~~l~~l~  200 (446)
                      +...++.|+...|+.+. ....+..+.....+|.. +.-  +.   ......++.+.+.+... ...-....+.++.|++
T Consensus       497 ~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~~~i~f--~~---~~~~~v~~~~~s~~~~d~~~~en~E~L~altnLa  570 (748)
T KOG4151|consen  497 RAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALAGKIDF--PG---ERSYEVVKPLDSALHNDEKGLENFEALEALTNLA  570 (748)
T ss_pred             cCccccccHHHHHHHHH-HHhchHHHHHHHHHHhhhcCC--CC---CchhhhhhhhcchhhhhHHHHHHHHHHHHhhccc
Confidence            44556778888888887 45556666677777761 111  11   11133344444444432 2233456788889999


Q ss_pred             cCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHh-cCChHHHHHHhccCchHHHHHHHHH
Q 043676          201 DGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIIN-HGAVPYLLDMLVHNHEEIIKKEISW  279 (446)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~v~~~a~~  279 (446)
                      ..+....+.+.+.-.++.+-.++..+++..+..++..+.||.-+..-..+.+.+ ....+.....+... +.....+++.
T Consensus       571 s~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a~  649 (748)
T KOG4151|consen  571 SISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGAG  649 (748)
T ss_pred             CcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhccc
Confidence            877766666888777888888888889999999999999999876655555555 34455555555555 7777777777


Q ss_pred             HHHHHhcCCHHHHH-HHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhc
Q 043676          280 IISNITAGNREQIQ-AVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDL  350 (446)
Q Consensus       280 ~l~~l~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~l  350 (446)
                      ++..++.-....+. ..--......+..++.++++.++...+....|+.. ...+....+.....++.+...
T Consensus       650 a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~-~~~ei~~~~~~~~~~~~l~~~  720 (748)
T KOG4151|consen  650 ALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE-ALFEIAEKIFETEVMELLSGL  720 (748)
T ss_pred             cccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH-HHHHHHHHhccchHHHHHHHH
Confidence            77766553333333 22224577888899999999999999999999544 345555555555555554443

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=97.27  E-value=0.019  Score=48.12  Aligned_cols=196  Identities=13%  Similarity=0.089  Sum_probs=121.4

Q ss_pred             CccchhHHHHHHHHhhcCCchhhHHHHh-cCChHHHHH----H---hccCc---hHHHHHH-HHHHHHHHhcCCHHHHHH
Q 043676          227 SPSVLTPALRTVGNIVTGDDFQTQCIIN-HGAVPYLLD----M---LVHNH---EEIIKKE-ISWIISNITAGNREQIQA  294 (446)
Q Consensus       227 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~~l~~----~---l~~~~---~~~v~~~-a~~~l~~l~~~~~~~~~~  294 (446)
                      +++.|+.|+.-|+.--...++..-.+.. .|.+..+++    .   +..+.   ...-|.. |...+..+ +..++.+..
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~v-Ashpetr~~   86 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCV-ASHPETRMP   86 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHH-HH-TTTHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHH-HcChHHHHH
Confidence            4556777777666655545555544553 344443332    1   22110   1122222 33333333 346788889


Q ss_pred             HHHcCChHHHHHHHhcCC-----cchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHH
Q 043676          295 VIDAGLIRPIVNLLQNAE-----FDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENI  369 (446)
Q Consensus       295 ~~~~~~i~~L~~ll~~~~-----~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l  369 (446)
                      +++..+.-.|..+++..+     ..+|-..+.+++.+.+.++++...++.+.+++|...+.++.+++-.+..|..++.++
T Consensus        87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI  166 (262)
T PF04078_consen   87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI  166 (262)
T ss_dssp             HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            999898777777776542     468999999999999998999999999999999999999999988899999999999


Q ss_pred             HHhhhhhhcccCCCCccchHHHHHHHhChHHH-HHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 043676          370 LKVGEAERNMGTTIGDVNQYAQFVEEAGGLEK-IENLQSHDNNEIHEKSVKIFKTYWCGRN  429 (446)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-l~~l~~~~~~~v~~~a~~~l~~~~~~~~  429 (446)
                      +..+..-.-..      ....+...-...+.. +..+...+++.+-+....+..++.+...
T Consensus       167 L~dd~GL~yiC------~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr  221 (262)
T PF04078_consen  167 LLDDVGLNYIC------QTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR  221 (262)
T ss_dssp             HHSHHHHHHHT------SSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT
T ss_pred             HcchhHHHHHh------cCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH
Confidence            88766544211      112233333334444 4566778888887776666666665554

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.26  E-value=0.076  Score=47.00  Aligned_cols=197  Identities=13%  Similarity=0.094  Sum_probs=126.1

Q ss_pred             HHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHH--HhCcHHHHHHhcCCCCccchhHHHHHHHHhhcC--Cchhh
Q 043676          174 LPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVI--EAGVCPRLVELLGHPSPSVLTPALRTVGNIVTG--DDFQT  249 (446)
Q Consensus       174 ~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~--~~~~~  249 (446)
                      +...+..+.......|+.++..+.++...... ...+.  ...+++.+.+.++.+..+-+..|+.+++-++-.  .....
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~  123 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS  123 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence            33444555566789999999999888754331 11121  225677888888887766667777777777643  22334


Q ss_pred             HHHHhcCChHHHHHHhccCc-hHHHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHH--Hhc----------CCc
Q 043676          250 QCIINHGAVPYLLDMLVHNH-EEIIKKEISWIISNITA---GNREQIQAVIDAGLIRPIVNL--LQN----------AEF  313 (446)
Q Consensus       250 ~~~~~~~~~~~l~~~l~~~~-~~~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~i~~L~~l--l~~----------~~~  313 (446)
                      ..+++ .+.+.|...+.+.. ...+|..++.+|+-++.   ...+.....++  .+..+...  .+.          +++
T Consensus       124 ~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~  200 (309)
T PF05004_consen  124 EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA  200 (309)
T ss_pred             HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence            44444 46788888887762 34566666666666654   33443332222  23322111  111          134


Q ss_pred             chHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhh
Q 043676          314 DTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEA  375 (446)
Q Consensus       314 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~  375 (446)
                      .+...|+.+.+-+....+........+ ..++.|..+|++++.+||..|-.+|.-+++....
T Consensus       201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~  261 (309)
T PF05004_consen  201 ALVAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLYELARD  261 (309)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence            688899999888877655544444333 3699999999999999999999999999887664

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.26  E-value=0.33  Score=50.63  Aligned_cols=143  Identities=14%  Similarity=0.139  Sum_probs=98.9

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHH
Q 043676           45 GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD  124 (446)
Q Consensus        45 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~  124 (446)
                      +.+..++..+..+. ..+|..|++||..+...++....   ...+-..+..-+.+....||+.|+..++......++...
T Consensus       816 ~yLk~Il~~l~e~~-ialRtkAlKclS~ive~Dp~vL~---~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~  891 (1692)
T KOG1020|consen  816 PYLKLILSVLGENA-IALRTKALKCLSMIVEADPSVLS---RPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIF  891 (1692)
T ss_pred             HHHHHHHHHhcCch-HHHHHHHHHHHHHHHhcChHhhc---CHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHH
Confidence            46777888888777 89999999999999986654322   122334444556677899999999999988866665433


Q ss_pred             HHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc---CCCHhHHHHHHHHHHHhcc
Q 043676          125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH---SNDEDVLTYACWSLSYLAD  201 (446)
Q Consensus       125 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~---~~~~~v~~~~~~~l~~l~~  201 (446)
                      ..     ...+..-+ .++...+|..++..+..+|...|.  +.   .....++++++   ++...++..+..++..+..
T Consensus       892 qy-----Y~~i~erI-lDtgvsVRKRvIKIlrdic~e~pd--f~---~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF  960 (1692)
T KOG1020|consen  892 QY-----YDQIIERI-LDTGVSVRKRVIKILRDICEETPD--FS---KIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWF  960 (1692)
T ss_pred             HH-----HHHHHhhc-CCCchhHHHHHHHHHHHHHHhCCC--hh---hHHHHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence            32     33455555 577889999999999999998643  22   23334444444   3334478888888777764


Q ss_pred             C
Q 043676          202 G  202 (446)
Q Consensus       202 ~  202 (446)
                      .
T Consensus       961 ~  961 (1692)
T KOG1020|consen  961 T  961 (1692)
T ss_pred             c
Confidence            3

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.23  E-value=0.014  Score=54.93  Aligned_cols=252  Identities=14%  Similarity=0.109  Sum_probs=133.4

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhh
Q 043676           92 IFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVR  171 (446)
Q Consensus        92 ~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  171 (446)
                      .++...+ .+...+..|...|......-|...+.     ++..++.+. .+.+..++..|+..|..+|.+.+    ....
T Consensus        27 ~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLc-EDed~~iR~~aik~lp~~ck~~~----~~v~   95 (556)
T PF05918_consen   27 EILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLC-EDEDVQIRKQAIKGLPQLCKDNP----EHVS   95 (556)
T ss_dssp             HHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHH-T-SSHHHHHHHHHHGGGG--T------T-HH
T ss_pred             HHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhHHHHHHhHH----HHHh
Confidence            3444444 57889999999999999888887666     467899999 78899999999999999998853    3456


Q ss_pred             hhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC---CCCccchhHHHHHHHHhhc-CCch
Q 043676          172 PALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLG---HPSPSVLTPALRTVGNIVT-GDDF  247 (446)
Q Consensus       172 ~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~---~~~~~~~~~a~~~l~~l~~-~~~~  247 (446)
                      .+...|+++|.++++.-...+=.+|..+...++.        +.+..+...+.   ..++.+|+.++..|..-.. -...
T Consensus        96 kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~  167 (556)
T PF05918_consen   96 KVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPE  167 (556)
T ss_dssp             HHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TT
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHH
Confidence            7889999999999888777777777777665443        22333333332   4677789988877643322 1111


Q ss_pred             hhH--HHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc----CCHHHHHHHHHcCChHHHHHHH------hcCCcch
Q 043676          248 QTQ--CIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA----GNREQIQAVIDAGLIRPIVNLL------QNAEFDT  315 (446)
Q Consensus       248 ~~~--~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~----~~~~~~~~~~~~~~i~~L~~ll------~~~~~~v  315 (446)
                      ...  .-.+.-++..+.++|.+- ...--...+.+|..+-.    .+...++.+++     .+.+..      ...+++.
T Consensus       168 ~~~p~~E~e~~i~~~ikkvL~DV-TaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~-----ii~eQa~Ld~~f~~sD~e~  241 (556)
T PF05918_consen  168 LLTPQKEMEEFIVDEIKKVLQDV-TAEEFELFMSLLKSLKIYGGKQTIEGRQELVD-----IIEEQADLDQPFDPSDPES  241 (556)
T ss_dssp             TS---HHHHHHHHHHHHHHCTT---HHHHHHHHHHHHTSGG---GSSHHHHHHHHH-----HHHHHHTTTS---SSSHHH
T ss_pred             HhhchHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhCccccccCChHHHHHHHH-----HHHHHhccCCCCCCcCHHH
Confidence            111  122333456666777653 22222233344444432    24444444433     222222      2223444


Q ss_pred             HHHHHHHHHH----hccCC-CHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhh
Q 043676          316 KKEAAWAISN----ATSGG-TQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVG  373 (446)
Q Consensus       316 ~~~a~~aL~~----l~~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~  373 (446)
                      ....+.++..    +.... +.....++.+ .++|.+-++    +++.+...+..+..+....
T Consensus       242 Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l----~e~~kl~lLk~lAE~s~~~  299 (556)
T PF05918_consen  242 IDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL----PEDRKLDLLKLLAELSPFC  299 (556)
T ss_dssp             HHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT---------HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC----ChHHHHHHHHHHHHHcCCC
Confidence            4444443333    22222 2334444444 466666555    3344444455555544443

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=97.20  E-value=0.039  Score=45.40  Aligned_cols=144  Identities=13%  Similarity=0.139  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCC----CChHHHHHHHHHHHHHcC-CChhhHHHHHhcCChH
Q 043676           17 SLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRE----DYPQLQYEAAWVLINIAS-GTSENTNVVIDHGAVP   91 (446)
Q Consensus        17 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~----~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~   91 (446)
                      .-...|+..|..+++.  .+.+..+.+..+--.|-.+|...    ..+-+|..++.+++.+.. ++.+....+...++++
T Consensus        94 nRVcnaL~LlQcvASH--pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP  171 (293)
T KOG3036|consen   94 NRVCNALALLQCVASH--PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP  171 (293)
T ss_pred             chHHHHHHHHHHHhcC--cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence            3345677777777776  56777788876555555665432    236789999999999997 4566777888999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhCCChHHH------HHHH-HcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 043676           92 IFVKLLSSPSDDVREQAVWALGNVAGDSPRCR------DLVL-SQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK  162 (446)
Q Consensus        92 ~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~------~~~~-~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  162 (446)
                      ..++.+..+++.-+..|..++..+..++....      +.+. -...+..++..+.+.++..+..+++++..+|+.+.
T Consensus       172 lCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp  249 (293)
T KOG3036|consen  172 LCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP  249 (293)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence            99999999999999999999998886554321      1111 11123444445556778899999999999998874

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.15  E-value=0.0039  Score=60.57  Aligned_cols=190  Identities=17%  Similarity=0.155  Sum_probs=129.6

Q ss_pred             HHHHHHhccccchhHHHHHHHHHHHhhcCCCC---------C----ChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHh
Q 043676          133 IPLLAELNEHAKLSMLRNATRTLSNFCRGKPE---------P----PFDQVRPALPALAQLVHSNDEDVLTYACWSLSYL  199 (446)
Q Consensus       133 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~---------~----~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l  199 (446)
                      ..++..| +  ++++-..+..++.-+..+.+.         .    .......++|.+++.+.+.....+..-+.+|.++
T Consensus       818 ~klld~L-s--~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshV  894 (1030)
T KOG1967|consen  818 EKLLDLL-S--GPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSHV  894 (1030)
T ss_pred             HHHHHhc-C--CccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHHH
Confidence            3555555 2  244555666666665555411         1    1123367889999999877778888888888888


Q ss_pred             ccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCch--HHHHHHH
Q 043676          200 ADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHE--EIIKKEI  277 (446)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~v~~~a  277 (446)
                      ..+-|...-.-.-..++|.|++.|.-+|..+|..++.++..+....+.....-+. .+++.++.+=.+..+  -.+|..|
T Consensus       895 l~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~A  973 (1030)
T KOG1967|consen  895 LTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVREDA  973 (1030)
T ss_pred             HhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHHHH
Confidence            8776653322222378889999999999999999999998887655544433332 366777777665522  5799999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHh
Q 043676          278 SWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNA  326 (446)
Q Consensus       278 ~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  326 (446)
                      ..++..+...-|...-...+..++..+++.|+++..-+|++|..+=.+.
T Consensus       974 LqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen  974 LQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred             HHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence            9999999873333323333446888999999888888999988764443

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=97.13  E-value=0.079  Score=46.91  Aligned_cols=241  Identities=12%  Similarity=0.063  Sum_probs=139.2

Q ss_pred             hhhHHHHH-HhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCc-hh
Q 043676          171 RPALPALA-QLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDD-FQ  248 (446)
Q Consensus       171 ~~~~~~l~-~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~-~~  248 (446)
                      .+++..++ +.+++.++.+|+.++.|++-.+--+.....     ..++.+...+..++..++..|+.++..+..... ..
T Consensus        25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            35565544 788899999999999999998876664443     446677777777788999999999998864322 11


Q ss_pred             hHHH-------HhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC----CcchHH
Q 043676          249 TQCI-------INHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA----EFDTKK  317 (446)
Q Consensus       249 ~~~~-------~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~----~~~v~~  317 (446)
                      ....       -...+...+.+.+.+. +++++..|+..++.+...+.-.-    ...++..|+-+.-+.    +..+++
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ  174 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQ  174 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHH
Confidence            1111       1235677888888888 88999999999999865321110    013455555444432    345665


Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCC----HHHHHHHHHHHHHHHHhhhhhhcccCCCCc--cchHHH
Q 043676          318 EAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSD----PEIVTVCLIGLENILKVGEAERNMGTTIGD--VNQYAQ  391 (446)
Q Consensus       318 ~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~----~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~--~~~~~~  391 (446)
                      .-...+-..+.. .+++... +.+.+++.+..+.+..+    +.-.....++...+++..............  ......
T Consensus       175 ~L~~Ffp~y~~s-~~~~Q~~-l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~~~~~~~~~~~~~~~~~~h~  252 (298)
T PF12719_consen  175 CLSVFFPVYASS-SPENQER-LAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTDPSKLVKESNQEIQNESVHV  252 (298)
T ss_pred             HHHHHHHHHHcC-CHHHHHH-HHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCChhhccCccccccccccHHH
Confidence            555555555543 4555444 45557777777765433    222222333333333332222211000000  011122


Q ss_pred             HHHHhChHHHHHHhhcCCCHH--HHHHHHHHHHHhcCC
Q 043676          392 FVEEAGGLEKIENLQSHDNNE--IHEKSVKIFKTYWCG  427 (446)
Q Consensus       392 ~l~~~~~~~~l~~l~~~~~~~--v~~~a~~~l~~~~~~  427 (446)
                      .+    +++.+..+..++..+  ..+.-.+.|.++.-.
T Consensus       253 ~L----a~~il~~i~~~~~~~~~~~k~~~~~L~~L~i~  286 (298)
T PF12719_consen  253 DL----AIDILNEILSDPEKEKEERKALCKALSKLEIS  286 (298)
T ss_pred             HH----HHHHHHHHHhccccchHHHHHHHHHHhccccC
Confidence            22    255566666444333  566677777777554

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.10  E-value=0.19  Score=48.35  Aligned_cols=162  Identities=18%  Similarity=0.170  Sum_probs=103.1

Q ss_pred             cHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHH
Q 043676          215 VCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQA  294 (446)
Q Consensus       215 ~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~  294 (446)
                      .=+.+-+++.+.++-+|......++---.+..       ..+++..++...-+..+.+||..|+-+|+-++..+++.   
T Consensus       520 Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---  589 (929)
T KOG2062|consen  520 ADPLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---  589 (929)
T ss_pred             hHHHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhh---
Confidence            33455566677777777776665543222221       12466777777444438999999999999998887764   


Q ss_pred             HHHcCChHHHHHHHh-cCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhh
Q 043676          295 VIDAGLIRPIVNLLQ-NAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVG  373 (446)
Q Consensus       295 ~~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~  373 (446)
                            .+..+.+|. +-++.||..++.+|+-.+.+.....        .+..|..+.+++..-||+.|+-++.-++.-.
T Consensus       590 ------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~  655 (929)
T KOG2062|consen  590 ------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE--------AINLLEPLTSDPVDFVRQGALIALAMIMIQQ  655 (929)
T ss_pred             ------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhc
Confidence                  344555554 5599999999999998777543222        2444556666777789999998888766433


Q ss_pred             hhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHH
Q 043676          374 EAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIH  414 (446)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~  414 (446)
                      ....         +|-...|     .+.+.++..+.+++.-
T Consensus       656 t~~~---------~pkv~~f-----rk~l~kvI~dKhEd~~  682 (929)
T KOG2062|consen  656 TEQL---------CPKVNGF-----RKQLEKVINDKHEDGM  682 (929)
T ss_pred             cccc---------CchHHHH-----HHHHHHHhhhhhhHHH
Confidence            3221         1112222     3446677777776643

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.09  E-value=0.04  Score=48.75  Aligned_cols=191  Identities=15%  Similarity=0.171  Sum_probs=115.4

Q ss_pred             HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh--hhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccC--CcHHHHH
Q 043676          134 PLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFD--QVRPALPALAQLVHSNDEDVLTYACWSLSYLADG--TNDKIQA  209 (446)
Q Consensus       134 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~--~~~~~~~  209 (446)
                      ..+..+ .+.....|..++..+.++..........  ....+++.+...++.+..+-+..++.+++-++-.  .......
T Consensus        47 ~~Id~l-~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e  125 (309)
T PF05004_consen   47 EAIDLL-TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE  125 (309)
T ss_pred             HHHHHH-HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence            444444 4456778888888888887665332222  2245677788888877766666777777777644  2233444


Q ss_pred             HHHhCcHHHHHHhcCCCCc--cchhHHHHHHHHhhcC---CchhhHHHHhcCChHHHH--HHhccC---------chHHH
Q 043676          210 VIEAGVCPRLVELLGHPSP--SVLTPALRTVGNIVTG---DDFQTQCIINHGAVPYLL--DMLVHN---------HEEII  273 (446)
Q Consensus       210 ~~~~~~~~~l~~ll~~~~~--~~~~~a~~~l~~l~~~---~~~~~~~~~~~~~~~~l~--~~l~~~---------~~~~v  273 (446)
                      +++ .+.+.|.+.+.+.+.  .+|..++.+|+.++..   .+......+  ..+..+.  ...+..         .++.+
T Consensus       126 i~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~l  202 (309)
T PF05004_consen  126 IFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAAL  202 (309)
T ss_pred             HHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccHH
Confidence            555 677888888887544  4555666677666532   222222111  1233121  222211         12456


Q ss_pred             HHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccC
Q 043676          274 KKEISWIISNITAG-NREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSG  329 (446)
Q Consensus       274 ~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  329 (446)
                      ...|+.+-+-+... +........+ ..++.|..+|++.+.+||..|..+|.-+...
T Consensus       203 ~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~  258 (309)
T PF05004_consen  203 VAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLYEL  258 (309)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            76766555555442 3333333333 4799999999999999999999999988653

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=97.09  E-value=0.21  Score=48.06  Aligned_cols=299  Identities=16%  Similarity=0.098  Sum_probs=166.8

Q ss_pred             HHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCC-------CChHHHHHHHHHHHHHcC--CChhhHHHHHhcCCh
Q 043676           20 LEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRE-------DYPQLQYEAAWVLINIAS--GTSENTNVVIDHGAV   90 (446)
Q Consensus        20 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~-------~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~~i   90 (446)
                      ..|+.++..+.+.. .+  ..  -.|+++.+...+...       +++.-.+.|++.+.++..  ..+....-+.+.-++
T Consensus       388 laal~fl~~~~sKr-ke--~T--fqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv  462 (970)
T COG5656         388 LAALFFLIISKSKR-KE--ET--FQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIV  462 (970)
T ss_pred             HHHHHHHHHHhccc-ch--hh--hhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence            44555665544432 11  11  137899999988321       124456667777777665  334444445556667


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC--Chh
Q 043676           91 PIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEP--PFD  168 (446)
Q Consensus        91 ~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~--~~~  168 (446)
                      +.++..++++.--++..++..+..+..+-+.   ...-..+.....+.+ ++.+-.++..|+-++..+..+....  -..
T Consensus       463 ~hv~P~f~s~ygfL~Srace~is~~eeDfkd---~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~q~h~k~sa  538 (970)
T COG5656         463 NHVIPAFRSNYGFLKSRACEFISTIEEDFKD---NGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNEQSHEKFSA  538 (970)
T ss_pred             HHhhHhhcCcccchHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhchhhhHHHHh
Confidence            8888888998889999999999988643322   222222455566677 4577788888999998887775111  111


Q ss_pred             hhhhhHHHHHHhhcCCCHhHHHHHHHHHHH-hccC----CcHHHHHHHHhCcHHHHHHhcCCCC------ccchhHHHHH
Q 043676          169 QVRPALPALAQLVHSNDEDVLTYACWSLSY-LADG----TNDKIQAVIEAGVCPRLVELLGHPS------PSVLTPALRT  237 (446)
Q Consensus       169 ~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~-l~~~----~~~~~~~~~~~~~~~~l~~ll~~~~------~~~~~~a~~~  237 (446)
                      ...+.++.+..+-+.-+.++...++..+.. .+..    .++....+++ .++.....++.+++      .+-+..|.+.
T Consensus       539 hVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~-qFlkiaq~l~ens~d~~s~vDDKqmaasGi  617 (970)
T COG5656         539 HVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVR-QFLKIAQSLLENSSDTSSVVDDKQMAASGI  617 (970)
T ss_pred             hhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHH-HHHHHHHHHHcCCccccccccHHHHHHHHH
Confidence            224444555555444455555555544422 2221    1111111111 23334444444431      1223345555


Q ss_pred             HHHhhc-----CCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCC
Q 043676          238 VGNIVT-----GDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAE  312 (446)
Q Consensus       238 l~~l~~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~  312 (446)
                      |..+..     .+....-.-+.....|.+--++++. -.++-.+|+..+-+.+....+ +..+. -|+.+.+.+++.+..
T Consensus       618 L~T~~smiLSlen~p~vLk~le~slypvi~Filkn~-i~dfy~Ea~dildg~tf~ske-I~pim-wgi~Ell~~~l~~~~  694 (970)
T COG5656         618 LRTIESMILSLENRPLVLKYLEVSLYPVISFILKNE-ISDFYQEALDILDGYTFMSKE-IEPIM-WGIFELLLNLLIDEI  694 (970)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHH-hhhhh-hHHHHHHHhcccccc
Confidence            544431     1222222223445667777777777 777888888888777543222 12121 256666666666655


Q ss_pred             c-chHHHHHHHHHHhccCCC
Q 043676          313 F-DTKKEAAWAISNATSGGT  331 (446)
Q Consensus       313 ~-~v~~~a~~aL~~l~~~~~  331 (446)
                      . .-...+..++.|+...+.
T Consensus       695 t~~y~ee~~~al~nfityG~  714 (970)
T COG5656         695 TAVYSEEVADALDNFITYGK  714 (970)
T ss_pred             hhhhHHHHHHHHHHHHHhCc
Confidence            3 667788889999887763

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.01  E-value=0.0088  Score=59.86  Aligned_cols=160  Identities=18%  Similarity=0.186  Sum_probs=122.6

Q ss_pred             ChHHHHHhhCC----CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC
Q 043676           89 AVPIFVKLLSS----PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPE  164 (446)
Q Consensus        89 ~i~~L~~~L~~----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~  164 (446)
                      ..|.+++..+.    .+|+++..|..+|+.+..-+.+..+.     .++.++..+.+++++.++.++.-+++-++-..|+
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fpn  994 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN  994 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence            34556666643    57999999999999998555443322     4789999998899999999999999988766543


Q ss_pred             CChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcC
Q 043676          165 PPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTG  244 (446)
Q Consensus       165 ~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~  244 (446)
                          .....-+.+...+++.++.+|..|+..+.+|.-++.-+.+     |.++.+..++.+++..++..|=..+..|+..
T Consensus       995 ----lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVK-----Gql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen  995 ----LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVK-----GQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred             ----ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhc-----ccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence                2345667888889999999999999999999876554444     9999999999999999988888777777764


Q ss_pred             CchhhHHHHhcCChHHHHHHhccC
Q 043676          245 DDFQTQCIINHGAVPYLLDMLVHN  268 (446)
Q Consensus       245 ~~~~~~~~~~~~~~~~l~~~l~~~  268 (446)
                      ...    +  .+++|-++..|.++
T Consensus      1066 ~n~----i--ynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1066 GNT----I--YNLLPDILSRLSNG 1083 (1251)
T ss_pred             ccc----h--hhhchHHHHhhccC
Confidence            432    2  13667777777655

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=97.01  E-value=0.037  Score=46.40  Aligned_cols=142  Identities=12%  Similarity=0.160  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCC----ChHHHHHHHHHHHHHcC-CChhhHHHHHhcCChHHH
Q 043676           19 QLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRED----YPQLQYEAAWVLINIAS-GTSENTNVVIDHGAVPIF   93 (446)
Q Consensus        19 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~----~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L   93 (446)
                      ...|+..|..+++.  ++.+..+++..+.-.|..+|+..+    .+.+|..++.+++.+.. ++++....+.+.++++..
T Consensus        67 VcnaLaLlQ~vAsh--petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplc  144 (262)
T PF04078_consen   67 VCNALALLQCVASH--PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLC  144 (262)
T ss_dssp             HHHHHHHHHHHHH---TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHH
T ss_pred             HHHHHHHHHHHHcC--hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHH
Confidence            34566666677786  678888999887777777776543    25688899999999987 567788888999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhhCCChHHH-------HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 043676           94 VKLLSSPSDDVREQAVWALGNVAGDSPRCR-------DLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK  162 (446)
Q Consensus        94 ~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~-------~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  162 (446)
                      ++.++.+++-.+..|..++..+..++....       ....-...+..++..+...+++.+.++++++...|+.+.
T Consensus       145 Lr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp  220 (262)
T PF04078_consen  145 LRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP  220 (262)
T ss_dssp             HHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence            999999999999999998888875543221       111111245555665667789999999999999999885

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=97.01  E-value=0.027  Score=51.19  Aligned_cols=221  Identities=12%  Similarity=0.158  Sum_probs=132.0

Q ss_pred             HHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hHHHHHHHHcCChHHHHHHhcccc
Q 043676           65 EAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAELNEHA  143 (446)
Q Consensus        65 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~  143 (446)
                      .|++.|-.+....+.....+.+.++++.++..++.+-...++.  .-...-.... ++.+.....       ...+ ...
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~i-~~~   72 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE--NKNEEAGSGIPPEYKESSVD-------GYSI-SYQ   72 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--ccccCCCCCCCCCccccccc-------cccc-CHH
Confidence            4667777777766777788888999999999886422222210  0000000000 000000000       0000 111


Q ss_pred             chhHHHHHHHHHHHhhc-CCCCC---Chhhh-hhhHHHHHHhhcCC---CHhHHHHHHHHHHHhccCCcHHHHHHHHhCc
Q 043676          144 KLSMLRNATRTLSNFCR-GKPEP---PFDQV-RPALPALAQLVHSN---DEDVLTYACWSLSYLADGTNDKIQAVIEAGV  215 (446)
Q Consensus       144 ~~~~~~~a~~~L~~l~~-~~~~~---~~~~~-~~~~~~l~~ll~~~---~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~  215 (446)
                      ...+.+..+.++..+.. .....   +-... ..+...|..++++.   .+.+...++..+..+..+.|.....+.+.|+
T Consensus        73 r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl  152 (379)
T PF06025_consen   73 RQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGL  152 (379)
T ss_pred             HHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCC
Confidence            22344555555555555 22111   11222 45666777777765   4889999999999999999988888999999


Q ss_pred             HHHHHHhcC-C---CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHH--HHH-HHHH----HHHHH
Q 043676          216 CPRLVELLG-H---PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEI--IKK-EISW----IISNI  284 (446)
Q Consensus       216 ~~~l~~ll~-~---~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--v~~-~a~~----~l~~l  284 (446)
                      .+.+++.+. .   ++.++....-.+++.+|- +....+.+.+.+.++.+++++.++ +.-  .+. ..+.    .+-.|
T Consensus       153 ~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~-~~~~~l~~~d~a~~lG~~~DEL  230 (379)
T PF06025_consen  153 IDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSP-DYVKALRRRDTASNLGNSFDEL  230 (379)
T ss_pred             hHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCH-HHHHHhcccchHHHHHHHHHHH
Confidence            999999988 4   344555556667777777 556677788899999999999876 321  111 2333    33444


Q ss_pred             hcCCHHHHHHHHH
Q 043676          285 TAGNREQIQAVID  297 (446)
Q Consensus       285 ~~~~~~~~~~~~~  297 (446)
                      .++.+..+..+++
T Consensus       231 ~RH~p~Lk~~i~~  243 (379)
T PF06025_consen  231 MRHHPSLKPDIID  243 (379)
T ss_pred             HccCHHHHHHHHH
Confidence            5566665555544

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.94  E-value=0.0019  Score=47.00  Aligned_cols=72  Identities=11%  Similarity=0.134  Sum_probs=60.2

Q ss_pred             ChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhcc
Q 043676          257 AVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATS  328 (446)
Q Consensus       257 ~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  328 (446)
                      ++..|+.+|..+.++.+..-||.-|+.++...|..+..+-+.|+-..+++++.+++++|+.+|+.++..+..
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            578899999655478888889999999998778887777788999999999999999999999999988754

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.93  E-value=0.05  Score=48.19  Aligned_cols=172  Identities=16%  Similarity=0.130  Sum_probs=111.6

Q ss_pred             CCHHHHH-HhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hHH
Q 043676           45 GVVPRFV-EFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDS-PRC  122 (446)
Q Consensus        45 ~~~~~L~-~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~-~~~  122 (446)
                      +++..|+ ..+++++ +.+|..|+.||+-.+--+.+....     .++.+...++..++.++..|+.++..+.... ...
T Consensus        26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            4455544 6778888 899999999999988745443332     2677777777789999999999999887321 111


Q ss_pred             HHH-------HHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc----CCCHhHHHH
Q 043676          123 RDL-------VLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH----SNDEDVLTY  191 (446)
Q Consensus       123 ~~~-------~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~----~~~~~v~~~  191 (446)
                      -+.       ......+..+.+.+ .+.+++++..++..++.|.-......   ...++..|+-+.-    .++..++..
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~  175 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC  175 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence            111       11223455666677 55688999999999999887763322   2344444443332    224667666


Q ss_pred             HHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCC
Q 043676          192 ACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPS  227 (446)
Q Consensus       192 ~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~  227 (446)
                      ....+-..+...+.... .+...+++.+..+....+
T Consensus       176 L~~Ffp~y~~s~~~~Q~-~l~~~f~~~l~~~~~~~~  210 (298)
T PF12719_consen  176 LSVFFPVYASSSPENQE-RLAEAFLPTLRTLSNAPD  210 (298)
T ss_pred             HHHHHHHHHcCCHHHHH-HHHHHHHHHHHHHHhCcc
Confidence            66667777776665544 555577777777665543

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.89  E-value=0.087  Score=47.71  Aligned_cols=185  Identities=13%  Similarity=0.117  Sum_probs=114.1

Q ss_pred             HHHHhhcCCCChHHHHHHHHHHHHHcCCC-hhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChHHHHHH
Q 043676           49 RFVEFLMREDYPQLQYEAAWVLINIASGT-SENTNVVIDHGAVPIFVKLLSS-PSDDVREQAVWALGNVAGDSPRCRDLV  126 (446)
Q Consensus        49 ~L~~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~  126 (446)
                      .++.-+......+-+..|+.-|..+.... -....... ..++..+++.|.+ .++..+..|+++|..++...+..-.. 
T Consensus       290 ~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D-  367 (516)
T KOG2956|consen  290 DLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD-  367 (516)
T ss_pred             HHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc-
Confidence            33344443322455666776555555433 22222222 2346778888888 78889999999999999776531100 


Q ss_pred             HHcCChHHHHHHhccccchhHHHHHHH-HHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcH
Q 043676          127 LSQGALIPLLAELNEHAKLSMLRNATR-TLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTND  205 (446)
Q Consensus       127 ~~~~~i~~l~~~l~~~~~~~~~~~a~~-~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~  205 (446)
                      ...-++..++..- .+.+..+...|.. ++..++...|...       +..+..++.+.|.+....++..+..++..-+.
T Consensus       368 stE~ai~K~Leaa-~ds~~~v~~~Aeed~~~~las~~P~~~-------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~  439 (516)
T KOG2956|consen  368 STEIAICKVLEAA-KDSQDEVMRVAEEDCLTTLASHLPLQC-------IVNISPLILTADEPRAVAVIKMLTKLFERLSA  439 (516)
T ss_pred             hHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHhhCchhH-------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCH
Confidence            0111244444444 3444444444444 4555565555433       34455555667888888888888888865443


Q ss_pred             HHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 043676          206 KIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVT  243 (446)
Q Consensus       206 ~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~  243 (446)
                      ..-..+-.++.|.+++..++.+..+|..|.+||-.+..
T Consensus       440 EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  440 EELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             HHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence            32223334889999999999999999999999987764

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=96.85  E-value=0.1  Score=49.74  Aligned_cols=257  Identities=12%  Similarity=0.120  Sum_probs=161.0

Q ss_pred             CCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHH
Q 043676           98 SSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPAL  177 (446)
Q Consensus        98 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l  177 (446)
                      .-.+.+-+..-...|....   +...+.+.....++.++..+. ..+  .-...+..+..+.......  ....+++|.+
T Consensus       264 ~lks~~eK~~Ff~~L~~~l---~~~pe~i~~~kvlp~Ll~~~~-~g~--a~~~~ltpl~k~~k~ld~~--eyq~~i~p~l  335 (690)
T KOG1243|consen  264 RLKSVEEKQKFFSGLIDRL---DNFPEEIIASKVLPILLAALE-FGD--AASDFLTPLFKLGKDLDEE--EYQVRIIPVL  335 (690)
T ss_pred             ccCcHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHhh-ccc--cchhhhhHHHHhhhhcccc--ccccchhhhH
Confidence            3345555555444444422   222234445555666666662 222  1111111222222221111  1556899999


Q ss_pred             HHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCC
Q 043676          178 AQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGA  257 (446)
Q Consensus       178 ~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~  257 (446)
                      +++++..|..+|-..+.-+-....+-.   ...++..+++.+..-+.+.++.+|+.++.++..++..-..   ..+....
T Consensus       336 ~kLF~~~Dr~iR~~LL~~i~~~i~~Lt---~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~---~~Ln~El  409 (690)
T KOG1243|consen  336 LKLFKSPDRQIRLLLLQYIEKYIDHLT---KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK---RNLNGEL  409 (690)
T ss_pred             HHHhcCcchHHHHHHHHhHHHHhhhcC---HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch---hhhcHHH
Confidence            999999999999988888877765533   2356678999999999999999999999999988863322   1233334


Q ss_pred             hHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHH
Q 043676          258 VPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKH  337 (446)
Q Consensus       258 ~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~  337 (446)
                      +..+...-.+. +..+|-...-+++.++.......   .+.-....+.+-+++.-..-|..+.+++......-....   
T Consensus       410 lr~~ar~q~d~-~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~---  482 (690)
T KOG1243|consen  410 LRYLARLQPDE-HGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSE---  482 (690)
T ss_pred             HHHHHhhCccc-cCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhh---
Confidence            44444444434 67788888888887755322211   222234445566666667888888888887655422211   


Q ss_pred             HHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhh
Q 043676          338 LVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAE  376 (446)
Q Consensus       338 l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~  376 (446)
                       +...+++.+.-+.-+++..++..+..++..+....++.
T Consensus       483 -va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~  520 (690)
T KOG1243|consen  483 -VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV  520 (690)
T ss_pred             -hhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence             23347888888889999999999999998887766654

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.84  E-value=0.51  Score=47.23  Aligned_cols=180  Identities=17%  Similarity=0.221  Sum_probs=111.5

Q ss_pred             hcCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhc---cccc----hhHHHHHHH
Q 043676           86 DHGAVPIFVKLLSS-----PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELN---EHAK----LSMLRNATR  153 (446)
Q Consensus        86 ~~~~i~~L~~~L~~-----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~~~~----~~~~~~a~~  153 (446)
                      +.|++..++.++.+     .........+..|...+ .-+.+|+.+.+.++++.|+..+.   ....    ..+.+..+.
T Consensus       115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~-Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~  193 (802)
T PF13764_consen  115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCC-KVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE  193 (802)
T ss_pred             cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHH-hhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence            46889999998876     23456666666776666 44678999999999999998874   2222    456666666


Q ss_pred             HHHHhhcCCCCCCh---------h----hhhhhHHHHHHhhcC----CCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcH
Q 043676          154 TLSNFCRGKPEPPF---------D----QVRPALPALAQLVHS----NDEDVLTYACWSLSYLADGTNDKIQAVIEAGVC  216 (446)
Q Consensus       154 ~L~~l~~~~~~~~~---------~----~~~~~~~~l~~ll~~----~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~  216 (446)
                      ++..+.........         .    ....-+..+...+.+    .++.+....+++|..++...++..+.+++.  +
T Consensus       194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F  271 (802)
T PF13764_consen  194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--F  271 (802)
T ss_pred             HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--H
Confidence            66555443311111         0    123335555555553    468999999999999999988888766642  2


Q ss_pred             HHHHHhcCC--CCccchhHHHHHHHHhhcCC------chhhHHHHhcCChHHHHHHhccC
Q 043676          217 PRLVELLGH--PSPSVLTPALRTVGNIVTGD------DFQTQCIINHGAVPYLLDMLVHN  268 (446)
Q Consensus       217 ~~l~~ll~~--~~~~~~~~a~~~l~~l~~~~------~~~~~~~~~~~~~~~l~~~l~~~  268 (446)
                      ...+++=..  ....--...+.+++.++.+-      ....+.+++.|++...+..|...
T Consensus       272 ~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~  331 (802)
T PF13764_consen  272 KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH  331 (802)
T ss_pred             HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh
Confidence            222222111  11111123455666665433      24566677888888888877554

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.84  E-value=0.1  Score=47.21  Aligned_cols=174  Identities=10%  Similarity=0.102  Sum_probs=111.4

Q ss_pred             hhHHHHHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhcC-CCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh
Q 043676          145 LSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLVHS-NDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVEL  222 (446)
Q Consensus       145 ~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~l  222 (446)
                      .+-+..|+.-|..+.... -...-.....++..+++.|.+ .++..+..+++.|..++.+.+.+...-.+ -.+..+++.
T Consensus       301 a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE-~ai~K~Lea  379 (516)
T KOG2956|consen  301 ASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE-IAICKVLEA  379 (516)
T ss_pred             hhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH-HHHHHHHHH
Confidence            344455555444444433 222333456777788888887 68899999999999999887654332222 344555566


Q ss_pred             cCCCCccchhHHHH-HHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCC
Q 043676          223 LGHPSPSVLTPALR-TVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG-NREQIQAVIDAGL  300 (446)
Q Consensus       223 l~~~~~~~~~~a~~-~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~  300 (446)
                      -.+.++.+...|.. |+.-++.+.|...        +..+..++... +...-..++..+..++.. +.+....++. .+
T Consensus       380 a~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~-di  449 (516)
T KOG2956|consen  380 AKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELLNLLP-DI  449 (516)
T ss_pred             HhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHHHhhh-hh
Confidence            56656555555544 4555566555432        23344444445 666666777788888763 3443333443 79


Q ss_pred             hHHHHHHHhcCCcchHHHHHHHHHHhccC
Q 043676          301 IRPIVNLLQNAEFDTKKEAAWAISNATSG  329 (446)
Q Consensus       301 i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  329 (446)
                      .|.+++..++.+..||+.|+++|..+...
T Consensus       450 aP~~iqay~S~SS~VRKtaVfCLVamv~~  478 (516)
T KOG2956|consen  450 APCVIQAYDSTSSTVRKTAVFCLVAMVNR  478 (516)
T ss_pred             hhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence            99999999999999999999999988653

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.66  E-value=0.3  Score=40.44  Aligned_cols=142  Identities=13%  Similarity=0.055  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-----CcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHH
Q 043676          273 IKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA-----EFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPL  347 (446)
Q Consensus       273 v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L  347 (446)
                      -|..-+.+|..+....++.+..+.+..+--.+..++...     ...+|-.++.+++.+.+.++.+...++...+++|..
T Consensus        94 nRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC  173 (293)
T KOG3036|consen   94 NRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC  173 (293)
T ss_pred             chHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence            344444444444455578888888877766666777543     457899999999999999999999999999999999


Q ss_pred             HhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHH-----HHHhhcCCCHHHHHHHHHHHH
Q 043676          348 CDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEK-----IENLQSHDNNEIHEKSVKIFK  422 (446)
Q Consensus       348 ~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----l~~l~~~~~~~v~~~a~~~l~  422 (446)
                      .+.++.+++.-+..|..++.+++-.+..-.          -.+...++.-.+..     +..+.+.+++.+-+-+..+.-
T Consensus       174 Lrime~GSelSKtvA~fIlqKIlldD~GL~----------YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYl  243 (293)
T KOG3036|consen  174 LRIMESGSELSKTVATFILQKILLDDVGLY----------YICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYL  243 (293)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHhhccccHH----------HHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            999999999999999999999876554432          12333333333332     344556666666555554444


Q ss_pred             Hh
Q 043676          423 TY  424 (446)
Q Consensus       423 ~~  424 (446)
                      ++
T Consensus       244 rL  245 (293)
T KOG3036|consen  244 RL  245 (293)
T ss_pred             Hh
Confidence            44

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=96.54  E-value=0.018  Score=45.23  Aligned_cols=143  Identities=15%  Similarity=0.146  Sum_probs=98.0

Q ss_pred             HHHHhcC--CCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHH
Q 043676          218 RLVELLG--HPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAV  295 (446)
Q Consensus       218 ~l~~ll~--~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~  295 (446)
                      .++..+.  ...+++|..+.-++..+..   ... .-....+-+.+-..+... +.+-...++.++..+--+.++....+
T Consensus         7 ~lL~~L~~~~~~~~~r~~a~v~l~k~l~---~~~-~~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~~l   81 (157)
T PF11701_consen    7 TLLTSLDMLRQPEEVRSHALVILSKLLD---AAR-EEFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGSEL   81 (157)
T ss_dssp             HHHHHHHCTTTSCCHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred             HHHHHhcccCCCHhHHHHHHHHHHHHHH---HhH-HHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHHHH
Confidence            3444443  3677789999888888842   222 222333445555566555 66677788889998877888877777


Q ss_pred             H-HcCChHHHHHHHh--cCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhccc-CCCHH-HHHHHHHHHHH
Q 043676          296 I-DAGLIRPIVNLLQ--NAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLL-CSDPE-IVTVCLIGLEN  368 (446)
Q Consensus       296 ~-~~~~i~~L~~ll~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~-~~~~~~~~l~~  368 (446)
                      . ..|+++.+..++.  .++..++..++.+|..-+.  +...+.. +.+.+++.|.+..+ ++++. ++..|+=+|.+
T Consensus        82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~--d~~~r~~-I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI--DKSCRTF-ISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT--SHHHHHC-CHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc--cHHHHHH-HHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            6 6788999999999  6788999999999988776  4455555 55568999999995 44455 67766655543

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.51  E-value=0.42  Score=47.49  Aligned_cols=194  Identities=17%  Similarity=0.133  Sum_probs=119.0

Q ss_pred             HHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHH--HHHHhhcCCCH-h
Q 043676          111 ALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALP--ALAQLVHSNDE-D  187 (446)
Q Consensus       111 ~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~--~l~~ll~~~~~-~  187 (446)
                      +++++....+.....+.+.+++..+...+......++...++..+.+++...+..........+.  .+-.++..-+. +
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            56677878888888889999999999999766788999999999999998874444433332222  33334444343 7


Q ss_pred             HHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHH-HHHHhc
Q 043676          188 VLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPY-LLDMLV  266 (446)
Q Consensus       188 v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~-l~~~l~  266 (446)
                      .-+.++..+..+....++..                   ...-+..+...+......-+.......-...+.+ +..++.
T Consensus       574 rsY~~~siLa~ll~~~~~~~-------------------~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~  634 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTT-------------------ECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILR  634 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCc-------------------cccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhc
Confidence            77777777777776544311                   1112222222222222111111111111122233 556666


Q ss_pred             cCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-CcchHHHHHHHH
Q 043676          267 HNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA-EFDTKKEAAWAI  323 (446)
Q Consensus       267 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL  323 (446)
                      .+..+.....|+|++.+++...++..+...+.++++.+.+.-... ..+++..+...+
T Consensus       635 ~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  692 (699)
T KOG3665|consen  635 LSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI  692 (699)
T ss_pred             ccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence            554678889999999999988888777788888888777654332 334444444443

>PRK14707 hypothetical protein; Provisional

Probab=96.44  E-value=1.9  Score=47.16  Aligned_cols=358  Identities=15%  Similarity=0.110  Sum_probs=201.8

Q ss_pred             HHHHHHhhcC-CCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCC-C-CHHHHHHHHHHHHHhhCCChHHH
Q 043676           47 VPRFVEFLMR-EDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSS-P-SDDVREQAVWALGNVAGDSPRCR  123 (446)
Q Consensus        47 ~~~L~~ll~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~-~-~~~v~~~a~~~l~~l~~~~~~~~  123 (446)
                      +..++..++. +++.+.+..+......++. ++..+..+-.+| |..++..+.. + ++..+..+...-..++.+ ...+
T Consensus       165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~-~d~~~~~~~~q~-ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l~  241 (2710)
T PRK14707        165 ISLALNAFSKWSDNPDCQAVAPRFAALVAS-DDRLRSAMDAQG-VATVLNALCKWPDTPDCGNAVSALAERLADE-SRLR  241 (2710)
T ss_pred             HHHHHHHhhcCCCCchHHHHHHHHHHHhcC-ChhhhcccchHH-HHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHHH
Confidence            4455555433 3335666666666666666 555565554444 5566665554 4 455555555444555543 4444


Q ss_pred             HHHHHcCChHHHHHHhccccchhHHHHHHHHHH-HhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccC
Q 043676          124 DLVLSQGALIPLLAELNEHAKLSMLRNATRTLS-NFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADG  202 (446)
Q Consensus       124 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~-~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~  202 (446)
                      ..+- ...+-..++.|.+-++......+...+. .++.+........-.++-..|-.+-+-.+..+...+...+..=...
T Consensus       242 ~~~~-~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~  320 (2710)
T PRK14707        242 NELK-PQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLAD  320 (2710)
T ss_pred             HhCC-hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhc
Confidence            4433 3346677777767777666666655554 4544432222222233334444444556666666665555543333


Q ss_pred             CcHHHHHHHHhCcHHHHHHhcCC-CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhc-cCchHHHHHHHHHH
Q 043676          203 TNDKIQAVIEAGVCPRLVELLGH-PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLV-HNHEEIIKKEISWI  280 (446)
Q Consensus       203 ~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~v~~~a~~~  280 (446)
                      +++..+.+ +.-.+...+.-|+. ++..+-..|...|..-....+..++.+ +...+..++.-+. -+ +..+...|+..
T Consensus       321 d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l-~~q~~a~~lNalsKWp-~~~~c~~aa~~  397 (2710)
T PRK14707        321 DPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDL-EPQGVSSVLNALSKWP-DTPVCAAAASA  397 (2710)
T ss_pred             cHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhccc-chhHHHHHHhhhhcCC-CchHHHHHHHH
Confidence            44444333 22333334444444 565555555555544444355555433 3344455555554 45 66677777777


Q ss_pred             HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHH
Q 043676          281 ISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVT  360 (446)
Q Consensus       281 l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~  360 (446)
                      |..-..++++....+-..|+-..|-.+-+-.+..+...++.+|.--..+ +.+.++.|--.++...|-.+-+.+|..+..
T Consensus       398 LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~-d~~l~~~~~p~~va~~LnalSKWPd~p~c~  476 (2710)
T PRK14707        398 LAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAH-DTELCKALDPINVTQALDALSKWPDTPICG  476 (2710)
T ss_pred             HHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhc-cHHHHhhcChHHHHHHHHHhhcCCCChhHH
Confidence            7766567777777776666666666666678888888888888766554 566666655555555555666778887776


Q ss_pred             HHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHH-HHHHHHHHHHhc
Q 043676          361 VCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEI-HEKSVKIFKTYW  425 (446)
Q Consensus       361 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v-~~~a~~~l~~~~  425 (446)
                      .+.+.|..-+.....             .++.|.-.+....|..|-.-++... .+.+.++..+..
T Consensus       477 ~aa~~La~~l~~~~~-------------l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~  529 (2710)
T PRK14707        477 QTASALAARLAHERR-------------LRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVV  529 (2710)
T ss_pred             HHHHHHHHHhcccHH-------------HHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Confidence            666666654443333             2456665666666777777666443 344455555554

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=96.42  E-value=0.53  Score=40.54  Aligned_cols=226  Identities=15%  Similarity=0.119  Sum_probs=135.1

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhc-cccchhHHHHHHHHHHHhhcCCCCCChhh
Q 043676           91 PIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELN-EHAKLSMLRNATRTLSNFCRGKPEPPFDQ  169 (446)
Q Consensus        91 ~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  169 (446)
                      +.|-..|.++++.+|..++.+|+.+...-+..   .....-+..++..+. +-.|......++.++..+..... .....
T Consensus         2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~-~~~~~   77 (262)
T PF14500_consen    2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN-FSPES   77 (262)
T ss_pred             cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC-CChhh
Confidence            34556788899999999999999888655431   112222455555442 11355556666777777774432 11222


Q ss_pred             hhhhHHHHHHhhc--CCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCccchhHHHHHHHHhhcCCc
Q 043676          170 VRPALPALAQLVH--SNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLTPALRTVGNIVTGDD  246 (446)
Q Consensus       170 ~~~~~~~l~~ll~--~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~~a~~~l~~l~~~~~  246 (446)
                      ...++..+.+-..  .--...|..+...+..+..+...... -...+++..+++.+.. .||+-...+...+..+....+
T Consensus        78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~-~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~  156 (262)
T PF14500_consen   78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQ-SMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD  156 (262)
T ss_pred             HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHH-hchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence            3333444433222  22467888888899888876544332 2233677888888876 577777777777776665433


Q ss_pred             hhhHHHHhcCChHHHHHHhc--------cCc-h--HHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcch
Q 043676          247 FQTQCIINHGAVPYLLDMLV--------HNH-E--EIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDT  315 (446)
Q Consensus       247 ~~~~~~~~~~~~~~l~~~l~--------~~~-~--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v  315 (446)
                      -       ....+.+.+.+.        .+. +  .-.++.-...|.++...++...     .-.+|.|++-|.++.+.+
T Consensus       157 ~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~~  224 (262)
T PF14500_consen  157 I-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPSV  224 (262)
T ss_pred             c-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcHH
Confidence            1       223334444331        111 1  1233444455555545444332     247899999999999999


Q ss_pred             HHHHHHHHHHhccCCCHH
Q 043676          316 KKEAAWAISNATSGGTQE  333 (446)
Q Consensus       316 ~~~a~~aL~~l~~~~~~~  333 (446)
                      |..++.+|..++..-+..
T Consensus       225 K~D~L~tL~~c~~~y~~~  242 (262)
T PF14500_consen  225 KLDSLQTLKACIENYGAD  242 (262)
T ss_pred             HHHHHHHHHHHHHHCCHH
Confidence            999999999887754433

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.39  E-value=0.1  Score=44.05  Aligned_cols=101  Identities=11%  Similarity=0.078  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-CCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcc
Q 043676          273 IKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQN-AEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLL  351 (446)
Q Consensus       273 v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll  351 (446)
                      ....|+..|.-++--.+..+..+-+...+..+++++.. ..+.++..++.+|..+... ++.+.+.|.+.+++..++.++
T Consensus       107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld-~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLD-SPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHc-ChHHHHHHHHhCCHHHHHHHH
Confidence            44556677777776667777888888999999999954 5789999999999988776 577888889999999999999


Q ss_pred             cCC--CHHHHHHHHHHHHHHHHhhh
Q 043676          352 LCS--DPEIVTVCLIGLENILKVGE  374 (446)
Q Consensus       352 ~~~--~~~~~~~~~~~l~~l~~~~~  374 (446)
                      ++.  +.+++.++++.|.-++....
T Consensus       186 k~~~~~~~~r~K~~EFL~fyl~~E~  210 (257)
T PF08045_consen  186 KSKSTDRELRLKCIEFLYFYLMPET  210 (257)
T ss_pred             ccccccHHHhHHHHHHHHHHHcccC
Confidence            765  57899999999987665433

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.31  E-value=0.071  Score=45.05  Aligned_cols=101  Identities=17%  Similarity=0.135  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHH
Q 043676           16 NSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVK   95 (446)
Q Consensus        16 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~   95 (446)
                      ......|+..|.-++--. ++....+.+...+..++.+|.....+.++..++.+|..+..+++.+...+-+.+++..++.
T Consensus       105 ~~li~~aL~vLQGl~LLH-p~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~  183 (257)
T PF08045_consen  105 DSLIALALRVLQGLCLLH-PPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCS  183 (257)
T ss_pred             hHHHHHHHHHHHHHHHcC-chHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHH
Confidence            334556778888776654 5666777788999999999965544899999999999998889999999999999999999


Q ss_pred             hhCC--CCHHHHHHHHHHHHHhhC
Q 043676           96 LLSS--PSDDVREQAVWALGNVAG  117 (446)
Q Consensus        96 ~L~~--~~~~v~~~a~~~l~~l~~  117 (446)
                      ++++  .+.+++-.++.+|.-+..
T Consensus       184 llk~~~~~~~~r~K~~EFL~fyl~  207 (257)
T PF08045_consen  184 LLKSKSTDRELRLKCIEFLYFYLM  207 (257)
T ss_pred             HHccccccHHHhHHHHHHHHHHHc
Confidence            9987  457888888887766653

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=96.30  E-value=1.2  Score=43.27  Aligned_cols=275  Identities=15%  Similarity=0.090  Sum_probs=151.6

Q ss_pred             CChHHHHHhhc-C-------CCHHHHHHHHHHHHHHhc--CCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHH
Q 043676            2 GSFPALVAGVW-S-------DDNSLQLEATTLSRKLLS--FDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLI   71 (446)
Q Consensus         2 ~~i~~l~~~l~-s-------~~~~~~~~a~~~l~~l~~--~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~   71 (446)
                      |.++-+...|+ +       +++.....|++.++++.+  .. ..+..-+.+.-+++.++..++++. --++.+|+..+.
T Consensus       408 giLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk-~sp~an~me~fiv~hv~P~f~s~y-gfL~Srace~is  485 (970)
T COG5656         408 GILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITK-MSPAANVMEYFIVNHVIPAFRSNY-GFLKSRACEFIS  485 (970)
T ss_pred             hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhcc-CchHHHHHHHHHHHHhhHhhcCcc-cchHHHHHHHHH
Confidence            55667777773 1       245556667777777665  22 445566666677888888888888 688999999999


Q ss_pred             HHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhc--cccchhHHH
Q 043676           72 NIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELN--EHAKLSMLR  149 (446)
Q Consensus        72 ~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~~~~  149 (446)
                      .+..   +.+..-+-..+.+....++++.+-.++..|+.++.-+..+. .....+.+ .+.+.+-++|.  +.-+.+...
T Consensus       486 ~~ee---Dfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~-q~h~k~sa-hVp~tmekLLsLSn~feiD~LS  560 (970)
T COG5656         486 TIEE---DFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE-QSHEKFSA-HVPETMEKLLSLSNTFEIDPLS  560 (970)
T ss_pred             HHHH---hcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch-hhhHHHHh-hhhHHHHHHHHhcccccchHHH
Confidence            9944   33333333345667777888878888888888888777544 23333322 22222222321  233444444


Q ss_pred             HHHHHHHH-hhcCCCCCChhhhhhh----HHHHHHhhcCC------CHhHHHHHHHHHHHhc------cCCcHHHHHHHH
Q 043676          150 NATRTLSN-FCRGKPEPPFDQVRPA----LPALAQLVHSN------DEDVLTYACWSLSYLA------DGTNDKIQAVIE  212 (446)
Q Consensus       150 ~a~~~L~~-l~~~~~~~~~~~~~~~----~~~l~~ll~~~------~~~v~~~~~~~l~~l~------~~~~~~~~~~~~  212 (446)
                      .+...+.. +++.-..-........    +.....++.++      .++-+..|.+.|..+.      .+.+...+ -..
T Consensus       561 ~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk-~le  639 (970)
T COG5656         561 MVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLK-YLE  639 (970)
T ss_pred             HHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHH-HHH
Confidence            44444332 2222111111111222    22233333322      1233334444443332      22222222 233


Q ss_pred             hCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc
Q 043676          213 AGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA  286 (446)
Q Consensus       213 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~  286 (446)
                      ....|.+--.+++...+.-..|+..+-+.+....+..  -+.-|+.+.+.+++.++.....-.+++-++.|+..
T Consensus       640 ~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~--pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfit  711 (970)
T COG5656         640 VSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIE--PIMWGIFELLLNLLIDEITAVYSEEVADALDNFIT  711 (970)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhh--hhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHH
Confidence            3556666666777777778888888877664332221  11235666677777766223666788888999865

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=96.27  E-value=1.1  Score=42.57  Aligned_cols=286  Identities=14%  Similarity=0.112  Sum_probs=152.8

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHH
Q 043676           16 NSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVK   95 (446)
Q Consensus        16 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~   95 (446)
                      -..|..++..++.....-+......+..     .--.++......+.|..+...|..+.......-. ...    ..+..
T Consensus         4 l~~R~~a~~~l~~~i~~~~~~~i~~iW~-----~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~-~~R----~~fF~   73 (464)
T PF11864_consen    4 LSERIKAAEELCESIQKYPLSSIEEIWY-----AAKDLIDPNQPSEARRAALELLIACIKRQDSSSG-LMR----AEFFR   73 (464)
T ss_pred             HHHHHHHHHHHHHHHHhCCchHHHHHHH-----HHhhhcCCCCCHHHHHHHHHHHHHHHHccccccH-HHH----HHHHH
Confidence            3457778888877665432222333222     2235666665578899999888888873322111 111    11122


Q ss_pred             hhC-CCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcccc--------------------------chhHH
Q 043676           96 LLS-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHA--------------------------KLSML  148 (446)
Q Consensus        96 ~L~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--------------------------~~~~~  148 (446)
                      .+. ...++....-+.+|..|+.+....  ..++.+..+.+...+....                          +....
T Consensus        74 ~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l  151 (464)
T PF11864_consen   74 DISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNL  151 (464)
T ss_pred             HHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhH
Confidence            222 233333344455666666544433  2235556666666552111                          22334


Q ss_pred             HHHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhc-CCCHhHHHHHHHHHHHhccC---CcHHHHHHHHhCcHHHHHHhc
Q 043676          149 RNATRTLSNFCRGK-PEPPFDQVRPALPALAQLVH-SNDEDVLTYACWSLSYLADG---TNDKIQAVIEAGVCPRLVELL  223 (446)
Q Consensus       149 ~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~-~~~~~v~~~~~~~l~~l~~~---~~~~~~~~~~~~~~~~l~~ll  223 (446)
                      ...+..+.++.... .........+++..++.+.. +.++.....++..+-.+...   +++...     .++..|....
T Consensus       152 ~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~-----~~i~vLCsi~  226 (464)
T PF11864_consen  152 SDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS-----PCIEVLCSIV  226 (464)
T ss_pred             HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH-----HHHHHHhhHh
Confidence            45555555555554 22333444555665555543 23444445555555554432   111111     2333343332


Q ss_pred             CCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccC-----chHHHHHHHHHHHHHHhcCCHH-HHHHHHH
Q 043676          224 GHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHN-----HEEIIKKEISWIISNITAGNRE-QIQAVID  297 (446)
Q Consensus       224 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-----~~~~v~~~a~~~l~~l~~~~~~-~~~~~~~  297 (446)
                        +..+....+-.++.||+...-...       .+..|..+|.++     .+..+...|+..+..+..+..+ ....+--
T Consensus       227 --~~~~l~~~~w~~m~nL~~S~~g~~-------~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~  297 (464)
T PF11864_consen  227 --NSVSLCKPSWRTMRNLLKSHLGHS-------AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPF  297 (464)
T ss_pred             --cccccchhHHHHHHHHHcCccHHH-------HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecc
Confidence              333677788889999986443222       356677777322     1345666788888888765422 2222212


Q ss_pred             cC--ChHHHHHHHhcCCcchHHHHHHHHHHhc
Q 043676          298 AG--LIRPIVNLLQNAEFDTKKEAAWAISNAT  327 (446)
Q Consensus       298 ~~--~i~~L~~ll~~~~~~v~~~a~~aL~~l~  327 (446)
                      .-  +++.+...++.+++.+-...+..+.++.
T Consensus       298 ~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll  329 (464)
T PF11864_consen  298 SPSSVLPSLLNALKSNSPRVDYEILLLINRLL  329 (464)
T ss_pred             cHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence            22  7888888888888888888888888887

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=96.27  E-value=0.28  Score=46.91  Aligned_cols=179  Identities=14%  Similarity=0.146  Sum_probs=122.4

Q ss_pred             hhhHHHHHHhhcC----CCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC-CCCccchhHHHHHHHHhhcCC
Q 043676          171 RPALPALAQLVHS----NDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLTPALRTVGNIVTGD  245 (446)
Q Consensus       171 ~~~~~~l~~ll~~----~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~~~~~a~~~l~~l~~~~  245 (446)
                      ..+-|.+.....+    +|+.++..|--++..+..-+.+...     .-+|.++..+. +++|.+|..|.-.++.++...
T Consensus       891 s~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcf  965 (1128)
T COG5098         891 SNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCF  965 (1128)
T ss_pred             hhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceeh
Confidence            4445555555554    5899999988888877654443333     55788888887 699999999999998887544


Q ss_pred             chhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHH
Q 043676          246 DFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISN  325 (446)
Q Consensus       246 ~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~  325 (446)
                      ....+.     .-..+..-|.+. +..||..+..++.++...+.-     --.|-++.+..++.+++.++...|-..+..
T Consensus       966 N~~~de-----~t~yLyrrL~De-~~~V~rtclmti~fLilagq~-----KVKGqlg~ma~~L~deda~Isdmar~fft~ 1034 (1128)
T COG5098         966 NTTADE-----HTHYLYRRLGDE-DADVRRTCLMTIHFLILAGQL-----KVKGQLGKMALLLTDEDAEISDMARHFFTQ 1034 (1128)
T ss_pred             hhhhHH-----HHHHHHHHhcch-hhHHHHHHHHHHHHHHHccce-----eeccchhhhHhhccCCcchHHHHHHHHHHH
Confidence            333332     345678888888 999999999999998764322     123778899999999999999999999999


Q ss_pred             hccCCCHHHHHHHHHcCChHHHHhcccC---CCHHHHHHHHHHHHHHHHh
Q 043676          326 ATSGGTQEQIKHLVREGCVKPLCDLLLC---SDPEIVTVCLIGLENILKV  372 (446)
Q Consensus       326 l~~~~~~~~~~~l~~~~~i~~L~~ll~~---~~~~~~~~~~~~l~~l~~~  372 (446)
                      ++...+   .   +-.|+++.+-.+-++   ++.+ -...++.|..+++.
T Consensus      1035 ~a~KdN---t---~yn~fidifs~ls~~ae~g~e~-fk~II~FLt~fI~k 1077 (1128)
T COG5098        1035 IAKKDN---T---MYNGFIDIFSTLSSDAENGQEP-FKLIIGFLTDFISK 1077 (1128)
T ss_pred             HHhccc---c---hhhhhHHHHHHcCchhhcCCCc-HHHHHHHHHHHHHH
Confidence            987532   1   112334433333221   2222 34556666666654

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.24  E-value=0.28  Score=47.01  Aligned_cols=105  Identities=16%  Similarity=0.149  Sum_probs=78.5

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHH
Q 043676           45 GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD  124 (446)
Q Consensus        45 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~  124 (446)
                      +.+..+++...+++ ..+|..++..|..+.... ..+..-+-.+....+..-+.+..+.||..|+.+|+.+=.+...-  
T Consensus        85 ~~f~hlLRg~Eskd-k~VRfrvlqila~l~d~~-~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--  160 (892)
T KOG2025|consen   85 GTFYHLLRGTESKD-KKVRFRVLQILALLSDEN-AEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--  160 (892)
T ss_pred             HHHHHHHhcccCcc-hhHHHHHHHHHHHHhccc-cccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC--
Confidence            66777888888888 799999999999998733 33333334466777777788889999999999999987332110  


Q ss_pred             HHHHcCChHHHHHHhccccchhHHHHHHHHHH
Q 043676          125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLS  156 (446)
Q Consensus       125 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~  156 (446)
                         +..++..+..+++.++++++++.++..+.
T Consensus       161 ---e~~v~n~l~~liqnDpS~EVRRaaLsnI~  189 (892)
T KOG2025|consen  161 ---ECPVVNLLKDLIQNDPSDEVRRAALSNIS  189 (892)
T ss_pred             ---cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence               22356788888988999999998875544

>PRK14707 hypothetical protein; Provisional

Probab=96.23  E-value=2.5  Score=46.35  Aligned_cols=395  Identities=15%  Similarity=0.084  Sum_probs=201.3

Q ss_pred             HHHHHhhc--CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcC-CCChHHHHHHHHHHHHHcCCChhhH
Q 043676            5 PALVAGVW--SDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMR-EDYPQLQYEAAWVLINIASGTSENT   81 (446)
Q Consensus         5 ~~l~~~l~--s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~~~~~~a~~~L~~l~~~~~~~~   81 (446)
                      ..+++..+  .+++.-+..+......+++.  ......+ +...+..++..+.. +++++-+. ++..|..........+
T Consensus       166 ~lllNafSKw~~~~~c~~aa~~la~~~~~~--d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~-aa~~la~~l~~~~~l~  241 (2710)
T PRK14707        166 SLALNAFSKWSDNPDCQAVAPRFAALVASD--DRLRSAM-DAQGVATVLNALCKWPDTPDCGN-AVSALAERLADESRLR  241 (2710)
T ss_pred             HHHHHHhhcCCCCchHHHHHHHHHHHhcCC--hhhhccc-chHHHHHHHHHHhcCCCChhHHH-HHHHHHHHHcCcHHHH
Confidence            34455444  34555555554444443343  2223333 33345555555443 44345444 4444544444356666


Q ss_pred             HHHHhcCChHHHHHhhCC-CCHHHHHHHHHHH-HHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHH-h
Q 043676           82 NVVIDHGAVPIFVKLLSS-PSDDVREQAVWAL-GNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSN-F  158 (446)
Q Consensus        82 ~~~~~~~~i~~L~~~L~~-~~~~v~~~a~~~l-~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~-l  158 (446)
                      ..+-.+| +-..+..|.. ++..+-..+...+ ..++ ..+..+..+-.. .+...++-|.+-++..+...+...|.. |
T Consensus       242 ~~~~~q~-va~~lN~lsKwp~~~~C~~a~~~lA~rl~-~~~~l~~al~~q-~vanalNalSKwpd~~vc~~Aa~~la~rl  318 (2710)
T PRK14707        242 NELKPQE-LGNALNALSKWADTPVCAAAASALAERLV-DDPGLRKALDPI-NVTQALNALSKWADLPVCAEAAIALAERL  318 (2710)
T ss_pred             HhCChHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHh-hhHHHHHhcCHH-HHHHHHhhhhcCCCchHHHHHHHHHHHHH
Confidence            6655555 4444444444 6655555554444 4554 444444443322 345556666677777766666655554 4


Q ss_pred             hcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCccchhHHHHH
Q 043676          159 CRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLTPALRT  237 (446)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~~a~~~  237 (446)
                      ..+..........++-..|-.+-+=+|..+...+..+|..-...++...+.+-- ..+...+.-+.. ++..+-..|...
T Consensus       319 ~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~-q~~a~~lNalsKWp~~~~c~~aa~~  397 (2710)
T PRK14707        319 ADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEP-QGVSSVLNALSKWPDTPVCAAAASA  397 (2710)
T ss_pred             hccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccch-hHHHHHHhhhhcCCCchHHHHHHHH
Confidence            443322222222333334444444445444444444444433333434433333 334444444444 666666666666


Q ss_pred             HHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHH
Q 043676          238 VGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKK  317 (446)
Q Consensus       238 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~  317 (446)
                      |..=....++..+.+-..|+-..|-.+-+-+ +..+...++..|.--..++.+..+.+--.++...|-.+-+-.|..+..
T Consensus       398 LA~~l~~d~~l~~~~~~Q~van~lnalsKWP-d~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~  476 (2710)
T PRK14707        398 LAEHVVDDLELRKGLDPQGVSNALNALAKWP-DLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICG  476 (2710)
T ss_pred             HHHHhccChhhhhhcchhhHHHHHHHhhcCC-cchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHH
Confidence            6655555666665444444444444444556 777777777777776667777666555455555555555567778887


Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHH-HHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHh
Q 043676          318 EAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEI-VTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEA  396 (446)
Q Consensus       318 ~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  396 (446)
                      .++..|..=... +++.++.|--.++...|-.+-+.++... ...+.++-..+.. ...             ....|...
T Consensus       477 ~aa~~La~~l~~-~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~-~~~-------------l~~~~~~~  541 (2710)
T PRK14707        477 QTASALAARLAH-ERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVD-ELQ-------------LRKAFDAH  541 (2710)
T ss_pred             HHHHHHHHHhcc-cHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhcc-chh-------------hhhhhhhH
Confidence            788777654433 4555555544455555666666666543 3333343333331 111             23444444


Q ss_pred             ChHHHHHHhhcCCCHHHHHHHHHHHHH
Q 043676          397 GGLEKIENLQSHDNNEIHEKSVKIFKT  423 (446)
Q Consensus       397 ~~~~~l~~l~~~~~~~v~~~a~~~l~~  423 (446)
                      +....+..+...++.+.-+.+..-|..
T Consensus       542 ~~~~~lnalSKwp~s~~C~~A~~~iA~  568 (2710)
T PRK14707        542 QVVNTLKALSKWPDKQLCAVAASGLAE  568 (2710)
T ss_pred             HHHHHHHhhhcCCchhHHHHHHHHHHH
Confidence            455556666666654443333333333

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=96.23  E-value=0.035  Score=51.40  Aligned_cols=135  Identities=16%  Similarity=0.173  Sum_probs=91.9

Q ss_pred             HHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh-cCCCCccchhHHHHHHHHhhcCCchhhHHHHh
Q 043676          176 ALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVEL-LGHPSPSVLTPALRTVGNIVTGDDFQTQCIIN  254 (446)
Q Consensus       176 ~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~l-l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~  254 (446)
                      .+..++.+.++-+|.....+++.--....       ..+++..+++. +.+.+.++|+.|..+|+-.|..+..       
T Consensus       520 ~I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~-------  585 (926)
T COG5116         520 YINELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD-------  585 (926)
T ss_pred             HHHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc-------
Confidence            34455555666666655554432111111       12566777777 6778889999999999988875543       


Q ss_pred             cCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHH
Q 043676          255 HGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQE  333 (446)
Q Consensus       255 ~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~  333 (446)
                        .+...+++|..+.++.||...+.+|+-.|+++...       -.+..|-.++.+...-||+.|+.+++-+....+++
T Consensus       586 --~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~  655 (926)
T COG5116         586 --LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-------VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPE  655 (926)
T ss_pred             --hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcc
Confidence              45667788877768999999999999988854332       13455666777778889999999998876655443

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=96.23  E-value=0.36  Score=46.20  Aligned_cols=156  Identities=19%  Similarity=0.173  Sum_probs=110.4

Q ss_pred             CHHHHHHhhcC----CCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCh
Q 043676           46 VVPRFVEFLMR----EDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLS-SPSDDVREQAVWALGNVAGDSP  120 (446)
Q Consensus        46 ~~~~L~~ll~~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~-~~~~~v~~~a~~~l~~l~~~~~  120 (446)
                      +-|...+...+    ++ +.++..|..+|..+..-+.+...     .-+|.|+..+. +|+|.+|.+|+..++.+.-.-.
T Consensus       893 F~pvVeE~csn~~~~sd-~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN  966 (1128)
T COG5098         893 FKPVVEEGCSNSSRFSD-EELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN  966 (1128)
T ss_pred             hhHHHHHHhccccccCC-HHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehh
Confidence            34444455544    45 89999999999888764444332     23788998887 6999999999999888763221


Q ss_pred             HHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhc
Q 043676          121 RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLA  200 (446)
Q Consensus       121 ~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~  200 (446)
                      ...+.     .-..+.+.| .+.+..+++.++.++.++....    .....|-++.+..+|.++|..+...|-..+..++
T Consensus       967 ~~~de-----~t~yLyrrL-~De~~~V~rtclmti~fLilag----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a 1036 (1128)
T COG5098         967 TTADE-----HTHYLYRRL-GDEDADVRRTCLMTIHFLILAG----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIA 1036 (1128)
T ss_pred             hhhHH-----HHHHHHHHh-cchhhHHHHHHHHHHHHHHHcc----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHH
Confidence            11111     235667777 6778899999999999987654    3455788999999999999999999988888888


Q ss_pred             cCCcHHHHHHHHhCcHHHHHHh
Q 043676          201 DGTNDKIQAVIEAGVCPRLVEL  222 (446)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~l~~l  222 (446)
                      ..+.....     |+++.+-.+
T Consensus      1037 ~KdNt~yn-----~fidifs~l 1053 (1128)
T COG5098        1037 KKDNTMYN-----GFIDIFSTL 1053 (1128)
T ss_pred             hcccchhh-----hhHHHHHHc
Confidence            65443222     555554433

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=96.21  E-value=0.3  Score=44.56  Aligned_cols=150  Identities=13%  Similarity=0.178  Sum_probs=103.4

Q ss_pred             HHHHHHhc--CCCCCcHHHHHh-cCCHHHHHHhhcCCC--ChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhC
Q 043676           24 TLSRKLLS--FDRNPPIEKVIQ-SGVVPRFVEFLMRED--YPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLS   98 (446)
Q Consensus        24 ~~l~~l~~--~~~~~~~~~~~~-~~~~~~L~~ll~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~   98 (446)
                      +.+..+..  .......+.+++ ..+...|..++++..  .+.+-..|+.++..+....|..-..+.+.|.++.+++.+.
T Consensus        82 k~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~  161 (379)
T PF06025_consen   82 KFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAIT  161 (379)
T ss_pred             HHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHh
Confidence            34444444  222344555666 566777777887764  3678889999999999988988899999999999999887


Q ss_pred             -C---CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccch------hHHHHHHHHHHHhhcCCCCCChh
Q 043676           99 -S---PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKL------SMLRNATRTLSNFCRGKPEPPFD  168 (446)
Q Consensus        99 -~---~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~------~~~~~a~~~L~~l~~~~~~~~~~  168 (446)
                       .   ++.++....-.+++.+|-+.. ..+.+.+.+.++.+++.+.+....      +.....-..+-.|.++.|.-+..
T Consensus       162 ~~~i~~s~e~l~~lP~~l~AicLN~~-Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~  240 (379)
T PF06025_consen  162 AKGILPSSEVLTSLPNVLSAICLNNR-GLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPD  240 (379)
T ss_pred             ccCCCCcHHHHHHHHHHHhHHhcCHH-HHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHH
Confidence             4   678888888899999996554 466777889999999988432211      23334444556667766544433


Q ss_pred             hhhhhH
Q 043676          169 QVRPAL  174 (446)
Q Consensus       169 ~~~~~~  174 (446)
                      ....++
T Consensus       241 i~~~ii  246 (379)
T PF06025_consen  241 IIDAII  246 (379)
T ss_pred             HHHHHH
Confidence            333333

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=96.20  E-value=0.14  Score=50.93  Aligned_cols=192  Identities=15%  Similarity=0.102  Sum_probs=130.6

Q ss_pred             HHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh-cCCCCccchhHHHHHHHHhhcCCchhhHHHH
Q 043676          175 PALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVEL-LGHPSPSVLTPALRTVGNIVTGDDFQTQCII  253 (446)
Q Consensus       175 ~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~l-l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~  253 (446)
                      +.+..-+.+.++.-|..++..+............ -...+.+..++.. +.+.+..+...++.+|..++.......... 
T Consensus       256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~-~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~-  333 (815)
T KOG1820|consen  256 KNLETEMLSKKWKDRKEALEELVAILEEAKKEIV-KGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY-  333 (815)
T ss_pred             hHHHHhhhccchHHHHHHHHHHHHHHhccccccc-cCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH-
Confidence            3444445567888888998888887765441111 1111333444433 334566778889999999987665543332 


Q ss_pred             hcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHH
Q 043676          254 NHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQE  333 (446)
Q Consensus       254 ~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~  333 (446)
                      ..++++.++.-+... ...++..+..++-.++..++.       ..+.+.+...+.++++.++..+...+.......++.
T Consensus       334 ~~~v~p~lld~lkek-k~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~  405 (815)
T KOG1820|consen  334 AKNVFPSLLDRLKEK-KSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK  405 (815)
T ss_pred             HHhhcchHHHHhhhc-cHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence            346788899998887 778887777666666542221       136788889999999999999888888877654422


Q ss_pred             HHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhh
Q 043676          334 QIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAE  376 (446)
Q Consensus       334 ~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~  376 (446)
                      ....-.-.++++.++....+.+.+|+..+..++..+.+.....
T Consensus       406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~  448 (815)
T KOG1820|consen  406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEE  448 (815)
T ss_pred             CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHH
Confidence            2222233457888899999999999999999999887765443

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=96.19  E-value=0.056  Score=42.56  Aligned_cols=147  Identities=10%  Similarity=0.095  Sum_probs=88.6

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHH
Q 043676           45 GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD  124 (446)
Q Consensus        45 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~  124 (446)
                      .+++.|+++++.+....+|.+++++|+.+..-+|.....+...  .+.-.  -.+.+......... ........++   
T Consensus        10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~~--~~~~~~~~~~~~l~-~~~~~~~~ee---   81 (160)
T PF11865_consen   10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSKS--SENSNDESTDISLP-MMGISPSSEE---   81 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCccc--cccccccchhhHHh-hccCCCchHH---
Confidence            4678888999888668999999999999998555443322211  11000  01111112211111 1111111222   


Q ss_pred             HHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhc
Q 043676          125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLA  200 (446)
Q Consensus       125 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~  200 (446)
                       ..-..++..+++.|.+..-..-...++.++.++..............++|.++..+++.++..++..+.-|+.+.
T Consensus        82 -~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   82 -YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             -HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence             222335778888885444444555677777777755545557777899999999999887788888777776654

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.18  E-value=0.0061  Score=32.73  Aligned_cols=29  Identities=28%  Similarity=0.403  Sum_probs=25.5

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHcC
Q 043676           46 VVPRFVEFLMREDYPQLQYEAAWVLINIAS   75 (446)
Q Consensus        46 ~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~   75 (446)
                      ++|.+++++++++ +++|..|+++|+.++.
T Consensus         1 llp~l~~~l~D~~-~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPS-PEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SS-HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCC-HHHHHHHHHHHHHHHh
Confidence            3789999999999 9999999999999875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.14  E-value=0.012  Score=31.55  Aligned_cols=30  Identities=30%  Similarity=0.344  Sum_probs=26.1

Q ss_pred             hHHHHHHhhcCCCHhHHHHHHHHHHHhccC
Q 043676          173 ALPALAQLVHSNDEDVLTYACWSLSYLADG  202 (446)
Q Consensus       173 ~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~  202 (446)
                      ++|.+.++++++++++|..++.+++.+++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            478999999999999999999999998753

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=96.11  E-value=0.48  Score=43.16  Aligned_cols=274  Identities=17%  Similarity=0.153  Sum_probs=137.6

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHH-HHHhhCCChHHHH
Q 043676           47 VPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSS-PSDDVREQAVWA-LGNVAGDSPRCRD  124 (446)
Q Consensus        47 ~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~-~~~~v~~~a~~~-l~~l~~~~~~~~~  124 (446)
                      +..+++-+.+.....+|..++--|+.-+. +++.+..+..+|..+.+++.+.+ ++..+...+..+ +.-++.+.+ ...
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~  100 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH  100 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence            56666667755547899999998988888 89999999999999999999955 444244444444 444444433 233


Q ss_pred             HHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh-hhhhhhHHHHHHhhc---------CCCHhHHHHHHH
Q 043676          125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPF-DQVRPALPALAQLVH---------SNDEDVLTYACW  194 (446)
Q Consensus       125 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~~~l~~ll~---------~~~~~v~~~~~~  194 (446)
                      .+...+....+++++.-...........      ..  ..... .........+...+.         .....-+..++.
T Consensus       101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~--~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall  172 (361)
T PF07814_consen  101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD------SS--RKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALL  172 (361)
T ss_pred             hhhchhHHHHHHHHhccccccccccchh------hh--hhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHH
Confidence            3334444555566663000000000000      00  00000 000011111111110         011222233333


Q ss_pred             HHHHhc--------------cCCcHHHHHHHHhCcHHHHHHhcCC----C-------Cc-----cchhHHHHHHHHhhcC
Q 043676          195 SLSYLA--------------DGTNDKIQAVIEAGVCPRLVELLGH----P-------SP-----SVLTPALRTVGNIVTG  244 (446)
Q Consensus       195 ~l~~l~--------------~~~~~~~~~~~~~~~~~~l~~ll~~----~-------~~-----~~~~~a~~~l~~l~~~  244 (446)
                      ++-.++              ...+.....+.+.|+++.++..+..    .       ++     .....++.+|.+.+..
T Consensus       173 ~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~  252 (361)
T PF07814_consen  173 ALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFL  252 (361)
T ss_pred             HHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhc
Confidence            333331              1112223345566778888888751    1       11     1344577888888876


Q ss_pred             CchhhHHHHh--cCChHHHHHH-hccC--chHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH-------h---
Q 043676          245 DDFQTQCIIN--HGAVPYLLDM-LVHN--HEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLL-------Q---  309 (446)
Q Consensus       245 ~~~~~~~~~~--~~~~~~l~~~-l~~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll-------~---  309 (446)
                      +.......+.  .+.+...... +...  ........+++.+.|++..++.....+...++...+..+.       .   
T Consensus       253 ~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~  332 (361)
T PF07814_consen  253 SEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPN  332 (361)
T ss_pred             CccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcccccccc
Confidence            6666555552  2333333332 2222  0234456788999999877766655555443322221111       1   


Q ss_pred             ----cCCcchHHHHHHHHHHhccCC
Q 043676          310 ----NAEFDTKKEAAWAISNATSGG  330 (446)
Q Consensus       310 ----~~~~~v~~~a~~aL~~l~~~~  330 (446)
                          ....+...-++.++-|++.+.
T Consensus       333 ~~~~~~~~D~~IL~Lg~LINL~E~s  357 (361)
T PF07814_consen  333 YVPEESSFDILILALGLLINLVEHS  357 (361)
T ss_pred             cccccccchHHHHHHHhHHHheeeC
Confidence                012345566777777776653

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=96.09  E-value=0.82  Score=39.48  Aligned_cols=203  Identities=10%  Similarity=0.093  Sum_probs=137.9

Q ss_pred             HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh---h---hhhhHHHHHHhhcCCCHhHHHHHHHHHH
Q 043676          124 DLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFD---Q---VRPALPALAQLVHSNDEDVLTYACWSLS  197 (446)
Q Consensus       124 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~---~---~~~~~~~l~~ll~~~~~~v~~~~~~~l~  197 (446)
                      ..+.+.|.+..++..+ ...+.+.+..++.+..++-.........   .   ....+..++.--.. .+++.-.+-..+.
T Consensus        73 qef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlr  150 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLR  150 (342)
T ss_pred             HHHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHH
Confidence            4566788889999988 6677888889999998887765221111   1   13334444443211 3555555544455


Q ss_pred             HhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCC----hHHHHHHhccCchHHH
Q 043676          198 YLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGA----VPYLLDMLVHNHEEII  273 (446)
Q Consensus       198 ~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~----~~~l~~~l~~~~~~~v  273 (446)
                      ....+ +...+.+....-+......++.+.-++...|..+...+.......+..++..+.    .+..-.++.++ +.-+
T Consensus       151 Ecirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyvt  228 (342)
T KOG1566|consen  151 ECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYVT  228 (342)
T ss_pred             HHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-ceeh
Confidence            54444 334555677777888888888888888888998888887655555555554332    33356677777 8999


Q ss_pred             HHHHHHHHHHHhcC--CHHHH-HHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCC
Q 043676          274 KKEISWIISNITAG--NREQI-QAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGG  330 (446)
Q Consensus       274 ~~~a~~~l~~l~~~--~~~~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  330 (446)
                      +..+...++.+..+  +.... +++-+..-+..++.+|++++..++.+|-....-+..+.
T Consensus       229 krqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp  288 (342)
T KOG1566|consen  229 KRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP  288 (342)
T ss_pred             HHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence            99999999998763  33332 33334467899999999999999999998888776653

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=96.05  E-value=0.098  Score=41.12  Aligned_cols=137  Identities=15%  Similarity=0.141  Sum_probs=94.8

Q ss_pred             CCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHH-hcCChHHH
Q 043676          183 SNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCII-NHGAVPYL  261 (446)
Q Consensus       183 ~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~~~~~l  261 (446)
                      ...+++|..+.-++..+..    ....-...-+-+.+-.++...+.+-...++.++..+....++....++ ..|+.+.+
T Consensus        16 ~~~~~~r~~a~v~l~k~l~----~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l   91 (157)
T PF11701_consen   16 RQPEEVRSHALVILSKLLD----AAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESL   91 (157)
T ss_dssp             TTSCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHH
T ss_pred             CCCHhHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHH
Confidence            3567888888888888742    222223323445555666666666778889999999888888777777 77888889


Q ss_pred             HHHhc--cCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-CCcc-hHHHHHHHHHHh
Q 043676          262 LDMLV--HNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQN-AEFD-TKKEAAWAISNA  326 (446)
Q Consensus       262 ~~~l~--~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~-v~~~a~~aL~~l  326 (446)
                      ..+..  .. +..+...++.+|..-|. +...+..+. ..+++.|-+.++. ++.. +|..|+-+|+.+
T Consensus        92 ~~~~~~~~~-~~~~~~~~lell~aAc~-d~~~r~~I~-~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl  157 (157)
T PF11701_consen   92 LPLASRKSK-DRKVQKAALELLSAACI-DKSCRTFIS-KNYVSWLKELYKNSKDDSEIRVLAAVGLCKL  157 (157)
T ss_dssp             HHHHH-CTS--HHHHHHHHHHHHHHTT-SHHHHHCCH-HHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred             HHHHhcccC-CHHHHHHHHHHHHHHHc-cHHHHHHHH-HHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence            98888  55 77888888888876653 455444444 4788889898854 4555 788888877653

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=95.93  E-value=0.89  Score=38.58  Aligned_cols=141  Identities=22%  Similarity=0.218  Sum_probs=93.6

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHH
Q 043676           47 VPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV  126 (446)
Q Consensus        47 ~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~  126 (446)
                      ++.|+.-+....+++.+...+..|..++.++..+..     -++..+..+...+....+..+.+.+..+-..++...   
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence            455555344444489999999999999984412222     236777777777777777777778777775554322   


Q ss_pred             HHcCChHHHHHHh---------ccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhh-cCCCHhHHHHHHHHH
Q 043676          127 LSQGALIPLLAEL---------NEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLV-HSNDEDVLTYACWSL  196 (446)
Q Consensus       127 ~~~~~i~~l~~~l---------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll-~~~~~~v~~~~~~~l  196 (446)
                         +.+..++...         ..+...+.......++..+|...|.    .-..+++.+..++ ++.++.++..++.++
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l  146 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL  146 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence               2233343331         1122334445556788888888765    4467788888888 788899999999999


Q ss_pred             HHhccC
Q 043676          197 SYLADG  202 (446)
Q Consensus       197 ~~l~~~  202 (446)
                      ..++..
T Consensus       147 ~~Lc~~  152 (234)
T PF12530_consen  147 APLCEA  152 (234)
T ss_pred             HHHHHH
Confidence            999943

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=95.89  E-value=0.29  Score=39.21  Aligned_cols=142  Identities=17%  Similarity=0.151  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHcCC-Chh----hHHHHHh-------cCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHc
Q 043676           62 LQYEAAWVLINIASG-TSE----NTNVVID-------HGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQ  129 (446)
Q Consensus        62 ~~~~a~~~L~~l~~~-~~~----~~~~~~~-------~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~  129 (446)
                      +|..|+.+|..++.. ++.    +...++-       ..-...+.-++.++++.+|..|+.++..+-.+...+-...-+.
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            577777777777763 211    1112221       1223445556788999999999999999986653321111111


Q ss_pred             C-------------------ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh--hhhhhHHHHHHhhcCCCHhH
Q 043676          130 G-------------------ALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFD--QVRPALPALAQLVHSNDEDV  188 (446)
Q Consensus       130 ~-------------------~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~~~~l~~ll~~~~~~v  188 (446)
                      .                   .-..|+..+..+.+..+....+.++..+....|.....  ....++..+..++.+.|.++
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v  161 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV  161 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence            1                   12234455555667888999999999999998655443  34566677777888899999


Q ss_pred             HHHHHHHHHHhccCC
Q 043676          189 LTYACWSLSYLADGT  203 (446)
Q Consensus       189 ~~~~~~~l~~l~~~~  203 (446)
                      +..++.+++.+....
T Consensus       162 ~v~~l~~~~~l~s~~  176 (182)
T PF13251_consen  162 RVAALSCLGALLSVQ  176 (182)
T ss_pred             HHHHHHHHHHHHcCC
Confidence            999999999887543

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=95.82  E-value=0.91  Score=41.40  Aligned_cols=275  Identities=19%  Similarity=0.198  Sum_probs=139.8

Q ss_pred             hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHH-hhcCCCCCCh
Q 043676           90 VPIFVKLLSS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSN-FCRGKPEPPF  167 (446)
Q Consensus        90 i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~-l~~~~~~~~~  167 (446)
                      +..++.-+.+ .+..+|..++.-|+.-+ .++.++..+...|....+++.+...++......++.++.. ++.+......
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~-~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l  101 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKC-ADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL  101 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHh-CCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence            5666666663 45678888888888888 4567899999999999999999555554344444444444 4444444444


Q ss_pred             hhhhhhHHHHHHhhcCC-CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC---------CCCccchhHHHHH
Q 043676          168 DQVRPALPALAQLVHSN-DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLG---------HPSPSVLTPALRT  237 (446)
Q Consensus       168 ~~~~~~~~~l~~ll~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~---------~~~~~~~~~a~~~  237 (446)
                      .........+..++... ...+....-      .. ......... ...+..+...+.         +....-+..|+.+
T Consensus       102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~-~~~~lsk~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~  173 (361)
T PF07814_consen  102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------SS-RKKNLSKVQ-QKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA  173 (361)
T ss_pred             hhchhHHHHHHHHhccccccccccchh------hh-hhhhhhHHH-HHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence            33455566666766611 000000000      00 000000010 112222222221         1223345556666


Q ss_pred             HHHhhc--------------CCchhhHHHHhcCChHHHHHHhcc----Cc-----------hHHHHHHHHHHHHHHhcCC
Q 043676          238 VGNIVT--------------GDDFQTQCIINHGAVPYLLDMLVH----NH-----------EEIIKKEISWIISNITAGN  288 (446)
Q Consensus       238 l~~l~~--------------~~~~~~~~~~~~~~~~~l~~~l~~----~~-----------~~~v~~~a~~~l~~l~~~~  288 (446)
                      +..++.              ..+...+.+...|+++.++..+.+    ..           +...-..+..+|-+.+..+
T Consensus       174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~  253 (361)
T PF07814_consen  174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS  253 (361)
T ss_pred             HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence            666631              011223445566778888888752    10           1112344667777776655


Q ss_pred             HHHHHHHHH--cCChHHHH-HHHh---cCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHH---h----ccc---
Q 043676          289 REQIQAVID--AGLIRPIV-NLLQ---NAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLC---D----LLL---  352 (446)
Q Consensus       289 ~~~~~~~~~--~~~i~~L~-~ll~---~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~---~----ll~---  352 (446)
                      .++..++..  .+.++.+. .++.   ..-......++..+.|++-+ ++..+..+...++...+.   .    +..   
T Consensus       254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~-n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~  332 (361)
T PF07814_consen  254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNN-NPSACEEFASPKLGQQLGLIVTSFFCVLSLPN  332 (361)
T ss_pred             ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCC-CccchHhhhhhHhccchHHHHHhhcccccccc
Confidence            555555553  23333332 2222   22344467788888888765 444444444332221111   1    111   


Q ss_pred             ----CCCHHHHHHHHHHHHHHHHhhh
Q 043676          353 ----CSDPEIVTVCLIGLENILKVGE  374 (446)
Q Consensus       353 ----~~~~~~~~~~~~~l~~l~~~~~  374 (446)
                          ...-++...+++++.|+++..+
T Consensus       333 ~~~~~~~~D~~IL~Lg~LINL~E~s~  358 (361)
T PF07814_consen  333 YVPEESSFDILILALGLLINLVEHSE  358 (361)
T ss_pred             cccccccchHHHHHHHhHHHheeeCc
Confidence                1223566677788888776544

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.81  E-value=0.13  Score=34.02  Aligned_cols=66  Identities=21%  Similarity=0.325  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-CcchHHHHHHHHHHhccCCCHHHHHHHHHcC
Q 043676          274 KKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA-EFDTKKEAAWAISNATSGGTQEQIKHLVREG  342 (446)
Q Consensus       274 ~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~  342 (446)
                      .+.|+|+++++++ ++.....+.+.++++.++++.... ...+|..|..+|+-++.  ..+..+.+.+.|
T Consensus         4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~--T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS--TEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC--CHHHHHHHHHcC
Confidence            5689999999975 466777777789999999999854 67899999999999987  566666665544

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=95.79  E-value=1.2  Score=40.01  Aligned_cols=160  Identities=15%  Similarity=0.152  Sum_probs=111.5

Q ss_pred             HHHHHHhcCCCCccchhHHHHHHHHhhc-CCchhhHHHHhc-CC-hHHHHHHhccC---ch---------HHHHHHHHHH
Q 043676          216 CPRLVELLGHPSPSVLTPALRTVGNIVT-GDDFQTQCIINH-GA-VPYLLDMLVHN---HE---------EIIKKEISWI  280 (446)
Q Consensus       216 ~~~l~~ll~~~~~~~~~~a~~~l~~l~~-~~~~~~~~~~~~-~~-~~~l~~~l~~~---~~---------~~v~~~a~~~  280 (446)
                      ++.+...|......+...++..+..++. ........+... ++ .+.+..++...   ..         +.+|...+..
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            6778888888888888899999999998 555666666632 22 22344444211   01         1788888766


Q ss_pred             HHHHhc-CCHHHHHHHHH-cCChHHHHHHHhcCCcchHHHHHHHHHH-hccCC--CHHHHHHHHHcCChHHHHhcccCCC
Q 043676          281 ISNITA-GNREQIQAVID-AGLIRPIVNLLQNAEFDTKKEAAWAISN-ATSGG--TQEQIKHLVREGCVKPLCDLLLCSD  355 (446)
Q Consensus       281 l~~l~~-~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~-l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~  355 (446)
                      +..+.. +++..+..+++ .+.+..+.+-+..+++++....+.++.. +....  .......+.....+..|..+....+
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~  217 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG  217 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence            666655 67777777764 5678888888888888999999999985 43321  2334444556667888999888777


Q ss_pred             H----HHHHHHHHHHHHHHHhhhh
Q 043676          356 P----EIVTVCLIGLENILKVGEA  375 (446)
Q Consensus       356 ~----~~~~~~~~~l~~l~~~~~~  375 (446)
                      +    .+...+.+.|..++.....
T Consensus       218 ~~~~~~~~~~vh~fL~~lcT~p~~  241 (330)
T PF11707_consen  218 EDEKSSVADLVHEFLLALCTDPKH  241 (330)
T ss_pred             CcccchHHHHHHHHHHHHhcCCCc
Confidence            7    8899999999988865443

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=95.77  E-value=0.31  Score=48.72  Aligned_cols=187  Identities=12%  Similarity=0.068  Sum_probs=130.6

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhh
Q 043676           91 PIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQV  170 (446)
Q Consensus        91 ~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  170 (446)
                      +.+..-+.++++.-|..++..+........ ........+.+..++.....+.+..+...++.+|..++..-.....-..
T Consensus       256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~  334 (815)
T KOG1820|consen  256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA  334 (815)
T ss_pred             hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence            344445556778888888888888775443 1111112234555566666777888889999999999887644444455


Q ss_pred             hhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCc-hhh
Q 043676          171 RPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDD-FQT  249 (446)
Q Consensus       171 ~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~-~~~  249 (446)
                      .+..|.+...+......++..+..++-.++....       -....+.+...+++.++..+..+...+.......+ ...
T Consensus       335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~  407 (815)
T KOG1820|consen  335 KNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV  407 (815)
T ss_pred             HhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence            6788888888888888888888888776665322       11556788899999999999998777777765443 222


Q ss_pred             HHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc
Q 043676          250 QCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA  286 (446)
Q Consensus       250 ~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~  286 (446)
                      ..-.-..+++.++....+. +.+||..|..+++-+..
T Consensus       408 ~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  408 EKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMK  443 (815)
T ss_pred             chhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHH
Confidence            2222345778888888888 89999999988887765

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=95.67  E-value=0.7  Score=44.46  Aligned_cols=227  Identities=14%  Similarity=0.148  Sum_probs=147.5

Q ss_pred             HHHHhcCCHHHHHHhhcCCC-ChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 043676           39 EKVIQSGVVPRFVEFLMRED-YPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAG  117 (446)
Q Consensus        39 ~~~~~~~~~~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~  117 (446)
                      +.++...++|.|+..+...+ ..++....+ -++.... .++     .+.++++.++++...++..+|-.-+.-+-+...
T Consensus       287 e~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~-k~~k~ld-~~e-----yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~  359 (690)
T KOG1243|consen  287 EEIIASKVLPILLAALEFGDAASDFLTPLF-KLGKDLD-EEE-----YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYID  359 (690)
T ss_pred             HHHHHHHHHHHHHHHhhccccchhhhhHHH-Hhhhhcc-ccc-----cccchhhhHHHHhcCcchHHHHHHHHhHHHHhh
Confidence            44555566777766665544 122222211 2222222 122     566789999999999999999776666655553


Q ss_pred             CChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHH
Q 043676          118 DSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLS  197 (446)
Q Consensus       118 ~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~  197 (446)
                      .   ....+.+..+++.+...+ .++++.+++..+.++..++..-..+  ......+..+..+-.+.+..+|....-|++
T Consensus       360 ~---Lt~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlg  433 (690)
T KOG1243|consen  360 H---LTKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLG  433 (690)
T ss_pred             h---cCHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhhchh--hhcHHHHHHHHhhCccccCcccccceeeec
Confidence            2   233455666788888888 7889999999999999887664222  333455566665555667889999988999


Q ss_pred             HhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHH
Q 043676          198 YLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEI  277 (446)
Q Consensus       198 ~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a  277 (446)
                      .++.......   .+.-....+.+-++++-...|..+...+.......+.   .-+...+++.+..+..++ +..+|..|
T Consensus       434 ki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~---~~va~kIlp~l~pl~vd~-e~~vr~~a  506 (690)
T KOG1243|consen  434 KIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ---SEVANKILPSLVPLTVDP-EKTVRDTA  506 (690)
T ss_pred             ccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcccccch---hhhhhhccccccccccCc-ccchhhHH
Confidence            8887643322   2222334455567777777888888887766554332   234456788888888888 78888877


Q ss_pred             HHHHHHHh
Q 043676          278 SWIISNIT  285 (446)
Q Consensus       278 ~~~l~~l~  285 (446)
                      -.++..+.
T Consensus       507 ~~~i~~fl  514 (690)
T KOG1243|consen  507 EKAIRQFL  514 (690)
T ss_pred             HHHHHHHH
Confidence            77766554

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=95.57  E-value=0.079  Score=43.29  Aligned_cols=108  Identities=15%  Similarity=0.145  Sum_probs=74.6

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCC--------CChHHHHHHHHHHHHHcCCC
Q 043676            6 ALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRE--------DYPQLQYEAAWVLINIASGT   77 (446)
Q Consensus         6 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~--------~~~~~~~~a~~~L~~l~~~~   77 (446)
                      .+++.+.+.....  ..+..|...+........+.+++.|++..|++.|..-        ........+++|+..+.. +
T Consensus        70 ~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n-~  146 (187)
T PF06371_consen   70 WYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN-T  146 (187)
T ss_dssp             HHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS-S
T ss_pred             HHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc-c
Confidence            4566666554332  3344444444433233467888889999999887631        225789999999999998 5


Q ss_pred             hhhHHHHHh-cCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 043676           78 SENTNVVID-HGAVPIFVKLLSSPSDDVREQAVWALGNVA  116 (446)
Q Consensus        78 ~~~~~~~~~-~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~  116 (446)
                      ......++. .+++..+...|.+++..++..++.+|..+|
T Consensus       147 ~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  147 KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            666666665 689999999999999999999999999887

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=95.55  E-value=1.9  Score=40.69  Aligned_cols=108  Identities=17%  Similarity=0.126  Sum_probs=77.3

Q ss_pred             hhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCc
Q 043676          167 FDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDD  246 (446)
Q Consensus       167 ~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~  246 (446)
                      .....+.+..++..+.+.+..+|..++..++.++..-.+... .+-.+++..|..-+-+..+.+|..|+.+|+.+-....
T Consensus        86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe-~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~  164 (885)
T COG5218          86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDE-VLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL  164 (885)
T ss_pred             hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHH-HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence            344566777777777888999999999999998876554333 3344888888888888999999999999988853222


Q ss_pred             hhhHHHHhcCChHHHHHHhccCchHHHHHHHHHH
Q 043676          247 FQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWI  280 (446)
Q Consensus       247 ~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~  280 (446)
                      ....     .....+..+++..++.+||..|+.-
T Consensus       165 neen-----~~~n~l~~~vqnDPS~EVRr~alln  193 (885)
T COG5218         165 NEEN-----RIVNLLKDIVQNDPSDEVRRLALLN  193 (885)
T ss_pred             ChHH-----HHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            1111     1334677777766588899876543

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=95.54  E-value=3.1  Score=41.92  Aligned_cols=128  Identities=16%  Similarity=0.200  Sum_probs=73.7

Q ss_pred             chhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 043676          230 VLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQ  309 (446)
Q Consensus       230 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~  309 (446)
                      ++..+.-+++++|-..+...+     ..+|.+++-|.......+|.+.+.+++.+|.+...    +++ ..+|.+-.-|.
T Consensus       947 vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa----m~d-~YiP~I~~~L~ 1016 (1529)
T KOG0413|consen  947 VRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA----MTD-RYIPMIAASLC 1016 (1529)
T ss_pred             HHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH----HHH-HhhHHHHHHhc
Confidence            344455555555544433322     24566666665553556666666666666543211    222 57888888888


Q ss_pred             cCCcchHHHHHHHHHHhccCCCHHHHHHHHHcC-ChHHHHhcccCCCHHHHHHHHHHHHHHHHhh
Q 043676          310 NAEFDTKKEAAWAISNATSGGTQEQIKHLVREG-CVKPLCDLLLCSDPEIVTVCLIGLENILKVG  373 (446)
Q Consensus       310 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~-~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~  373 (446)
                      +.++-+|+.+...|.++.+.+   ..+.   .| .+-.++--+-+.+++++.-+-..+..++...
T Consensus      1017 Dp~~iVRrqt~ilL~rLLq~~---~vKw---~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1017 DPSVIVRRQTIILLARLLQFG---IVKW---NGELFIRFMLALLDANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred             CchHHHHHHHHHHHHHHHhhh---hhhc---chhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhc
Confidence            889999999999999997642   1111   11 1111222233456777777776776666543

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=95.53  E-value=3.1  Score=45.88  Aligned_cols=266  Identities=9%  Similarity=0.076  Sum_probs=147.1

Q ss_pred             CCCHHHHHHHHHHHHHhhCC---ChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHH
Q 043676           99 SPSDDVREQAVWALGNVAGD---SPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALP  175 (446)
Q Consensus        99 ~~~~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~  175 (446)
                      +++..++..|+..|..++..   .++....-.+...+.++..++....+.++++.++.++.++......    ....+-+
T Consensus      1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~----nIkSGWk 1223 (1780)
T PLN03076       1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN----NVKSGWK 1223 (1780)
T ss_pred             CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh----hhhcCcH
Confidence            35677888888888887731   1222222234456788888887777889999999999998776421    1122333


Q ss_pred             HHHHhh----cCCCHhHHHHHHHHHHHhccCCcHHHH----HHHHhCcHHHHHHhcCCC-CccchhHHHHHHHHhhcCC-
Q 043676          176 ALAQLV----HSNDEDVLTYACWSLSYLADGTNDKIQ----AVIEAGVCPRLVELLGHP-SPSVLTPALRTVGNIVTGD-  245 (446)
Q Consensus       176 ~l~~ll----~~~~~~v~~~~~~~l~~l~~~~~~~~~----~~~~~~~~~~l~~ll~~~-~~~~~~~a~~~l~~l~~~~-  245 (446)
                      .+..++    ...++.+...+..++..+....-....    ..+ ..++..+..+.... +.++-..|+..|++++..- 
T Consensus      1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F-~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La 1302 (1780)
T PLN03076       1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF-TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLA 1302 (1780)
T ss_pred             HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH-HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHH
Confidence            333333    455778888888888776543111000    001 14455555555443 3556666666666552100 


Q ss_pred             ---c-----------------------hhh-----HHHHhcCChHH---HHHHhccCchHHHHHHHHHHHHHHhc-----
Q 043676          246 ---D-----------------------FQT-----QCIINHGAVPY---LLDMLVHNHEEIIKKEISWIISNITA-----  286 (446)
Q Consensus       246 ---~-----------------------~~~-----~~~~~~~~~~~---l~~~l~~~~~~~v~~~a~~~l~~l~~-----  286 (446)
                         -                       ...     ........++.   +..+..++ +.+||..|+.+|-.+..     
T Consensus      1303 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076       1303 EGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred             hccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhhcc
Confidence               0                       000     00001123333   33445556 89999999999888764     


Q ss_pred             CCHHHHHHHHHcCChHHHHHHHhcC----------------C----------cchHHHHHHHHHHhccCCCHHHHHHHHH
Q 043676          287 GNREQIQAVIDAGLIRPIVNLLQNA----------------E----------FDTKKEAAWAISNATSGGTQEQIKHLVR  340 (446)
Q Consensus       287 ~~~~~~~~~~~~~~i~~L~~ll~~~----------------~----------~~v~~~a~~aL~~l~~~~~~~~~~~l~~  340 (446)
                      -+++....+.+ +++-++++.++..                +          .+....|+..+.++...- -+....+ -
T Consensus      1382 Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~f-Fd~L~~~-L 1458 (1780)
T PLN03076       1382 FSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKF-YPTVNPL-L 1458 (1780)
T ss_pred             CCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHH-H
Confidence            14444455555 5666666655421                0          022233333344443211 1112221 2


Q ss_pred             cCChHHHHhcccCCCHHHHHHHHHHHHHHHHhh
Q 043676          341 EGCVKPLCDLLLCSDPEIVTVCLIGLENILKVG  373 (446)
Q Consensus       341 ~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~  373 (446)
                      .+++..|..++..++..+...+..+|.+++...
T Consensus      1459 ~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~n 1491 (1780)
T PLN03076       1459 KKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNA 1491 (1780)
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHh
Confidence            345666777777888889889999999887643

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=95.50  E-value=0.84  Score=44.10  Aligned_cols=234  Identities=14%  Similarity=0.145  Sum_probs=135.0

Q ss_pred             HHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhh
Q 043676          102 DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLV  181 (446)
Q Consensus       102 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll  181 (446)
                      +.-+..-+..|.++.-.-|   ..+....++++++..+.   +..+.-..+-.+..+++..  .........+|.|...+
T Consensus       287 n~qKs~Flk~Ls~~ip~fp---~rv~~~kiLP~L~~el~---n~~~vp~~LP~v~~i~~~~--s~~~~~~~~~p~l~pi~  358 (700)
T KOG2137|consen  287 NSQKSSFLKGLSKLIPTFP---ARVLFQKILPTLVAELV---NTKMVPIVLPLVLLIAEGL--SQNEFGPKMLPALKPIY  358 (700)
T ss_pred             cHHHHHHHHHHHHhhccCC---HHHHHHhhhhHHHHHhc---cccccccccchhhhhhhcc--chhhhhhhhhHHHHHHh
Confidence            3334344444554443333   23444456677776662   2223233333333333332  12223355677777777


Q ss_pred             cCC-CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHH
Q 043676          182 HSN-DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPY  260 (446)
Q Consensus       182 ~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~  260 (446)
                      +.. ..++....+.-+--|....+   ...+...+++.|...+++.+..++..++..+...+..-+.   ..+...+++.
T Consensus       359 ~~~~~~~~~l~i~e~mdlL~~Kt~---~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~vk~~ilP~  432 (700)
T KOG2137|consen  359 SASDPKQALLFILENMDLLKEKTP---PEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFVKQAILPR  432 (700)
T ss_pred             ccCCcccchhhHHhhHHHHHhhCC---hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHHHHHHHHH
Confidence            743 33333333333322332212   1233447889999999999999999999999988875542   3455667888


Q ss_pred             HHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHH
Q 043676          261 LLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVR  340 (446)
Q Consensus       261 l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~  340 (446)
                      +..+.....+..++..++-+++.++.    ......-...+.++.+..+..++.+......+..++...... . ..+..
T Consensus       433 l~~l~~~tt~~~vkvn~L~c~~~l~q----~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~-g-~ev~~  506 (700)
T KOG2137|consen  433 LKNLAFKTTNLYVKVNVLPCLAGLIQ----RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYS-G-VEVMA  506 (700)
T ss_pred             hhcchhcccchHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhccc-c-eeeeh
Confidence            88775444488999999999998862    112111112455566666677888888888887777654221 1 23345


Q ss_pred             cCChHHHHhcccCCC
Q 043676          341 EGCVKPLCDLLLCSD  355 (446)
Q Consensus       341 ~~~i~~L~~ll~~~~  355 (446)
                      ..++|.++-+.-.+.
T Consensus       507 ~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  507 ENVLPLLIPLSVAPS  521 (700)
T ss_pred             hhhhhhhhhhhhccc
Confidence            567888877766554

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.48  E-value=0.14  Score=43.83  Aligned_cols=140  Identities=11%  Similarity=0.143  Sum_probs=95.4

Q ss_pred             HHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHH
Q 043676          216 CPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAV  295 (446)
Q Consensus       216 ~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~  295 (446)
                      +...+..|.+.++.....++..|..|+...++.....++ .++-.+++-+++. ...|-..|+.+++.+...-...+.. 
T Consensus        90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~i~~-  166 (334)
T KOG2933|consen   90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNSIDQ-  166 (334)
T ss_pred             HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            344667778888988999999999998877765554443 2556677777888 8899999999999987632222222 


Q ss_pred             HHcCChHHHH-HHHhcC---CcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHH
Q 043676          296 IDAGLIRPIV-NLLQNA---EFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENIL  370 (446)
Q Consensus       296 ~~~~~i~~L~-~ll~~~---~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~  370 (446)
                          -+..++ .++...   +.=++..|-.+|..+..+..+..        +++.|+..+.+.++.++..+.-++.+..
T Consensus       167 ----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~--------~L~~L~~~~~~~n~r~r~~a~~~~~~~v  233 (334)
T KOG2933|consen  167 ----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK--------LLRKLIPILQHSNPRVRAKAALCFSRCV  233 (334)
T ss_pred             ----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH--------HHHHHHHHHhhhchhhhhhhhccccccc
Confidence                223333 333322   34578999999999987654433        4566777788888888887766555543

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.42  E-value=0.11  Score=34.40  Aligned_cols=67  Identities=19%  Similarity=0.108  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcC
Q 043676           19 QLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHG   88 (446)
Q Consensus        19 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~   88 (446)
                      ...++|++.++.+.  +.-...+.+.++++.++++..+.+...+|-.|..+|+-++. +.+..+.+.+.|
T Consensus         4 lKaaLWaighIgss--~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSS--PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcC--hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence            46799999999885  44455566779999999999876658999999999999998 777777766554

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=95.37  E-value=0.32  Score=45.41  Aligned_cols=153  Identities=15%  Similarity=0.084  Sum_probs=99.5

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHh-hcCCCChHHHHHHHHHHHHHcCCChhhHHHHH
Q 043676            7 LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEF-LMREDYPQLQYEAAWVLINIASGTSENTNVVI   85 (446)
Q Consensus         7 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~l-l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~   85 (446)
                      +-+++.+.|+-+|......+.-.-.+..+        .+++..|+.. ..+.+ .++|+.|+.+|+-++..++       
T Consensus       521 I~ell~d~ds~lRy~G~fs~alAy~GTgn--------~~vv~~lLh~avsD~n-DDVrRAAViAlGfvc~~D~-------  584 (926)
T COG5116         521 INELLYDKDSILRYNGVFSLALAYVGTGN--------LGVVSTLLHYAVSDGN-DDVRRAAVIALGFVCCDDR-------  584 (926)
T ss_pred             HHHHhcCchHHhhhccHHHHHHHHhcCCc--------chhHhhhheeecccCc-hHHHHHHHHheeeeEecCc-------
Confidence            34566778888888887777643343211        2667777777 55566 7999999999999988544       


Q ss_pred             hcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC
Q 043676           86 DHGAVPIFVKLLS-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPE  164 (446)
Q Consensus        86 ~~~~i~~L~~~L~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~  164 (446)
                        ..+...+++|. +.++.+|...+.+|+-.|.+....  .     ++..|-.++ .++..-+++.|+-+++.+......
T Consensus       585 --~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~--~-----a~diL~~L~-~D~~dfVRQ~AmIa~~mIl~Q~n~  654 (926)
T COG5116         585 --DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK--V-----ATDILEALM-YDTNDFVRQSAMIAVGMILMQCNP  654 (926)
T ss_pred             --chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH--H-----HHHHHHHHh-hCcHHHHHHHHHHHHHHHHhhcCc
Confidence              33455556555 478899999999999888554321  1     123333344 667777888888888877666533


Q ss_pred             CChhhhhhhHHHHHHhhcCCC
Q 043676          165 PPFDQVRPALPALAQLVHSND  185 (446)
Q Consensus       165 ~~~~~~~~~~~~l~~ll~~~~  185 (446)
                      .-.....++...+.+++.+..
T Consensus       655 ~Lnp~v~~I~k~f~~vI~~Kh  675 (926)
T COG5116         655 ELNPNVKRIIKKFNRVIVDKH  675 (926)
T ss_pred             ccChhHHHHHHHHHHHHhhhh
Confidence            333344556666666665443

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=95.31  E-value=0.8  Score=42.69  Aligned_cols=156  Identities=13%  Similarity=0.093  Sum_probs=110.4

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCC---hHHHHHHHHHHHHHcCCChhhH
Q 043676            5 PALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDY---PQLQYEAAWVLINIASGTSENT   81 (446)
Q Consensus         5 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~---~~~~~~a~~~L~~l~~~~~~~~   81 (446)
                      ..+++.+.+++...+..+...+..+..+  ......++...++..|.+++.++..   .++...+++++..+..+.- ..
T Consensus        86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d--~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vs  162 (713)
T KOG2999|consen   86 KRIMEILTEGNNISKMEALKELDSLSLD--PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VS  162 (713)
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHhhcccc--HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-ee
Confidence            3567888999999999999888876554  5668889999999999999988762   3555556666665554221 11


Q ss_pred             HHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 043676           82 NVVIDHGAVPIFVKLLSS--PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFC  159 (446)
Q Consensus        82 ~~~~~~~~i~~L~~~L~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  159 (446)
                      -..+...++.....+.+.  .+..+-..|+..+-++...++..++.+.+.--+..++..+ +..+..++..|...+..+.
T Consensus       163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~nal~  241 (713)
T KOG2999|consen  163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNALF  241 (713)
T ss_pred             eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHHHH
Confidence            111122233444444432  4566778889999999988887888888888899999999 6777888888887777777


Q ss_pred             cCCCC
Q 043676          160 RGKPE  164 (446)
Q Consensus       160 ~~~~~  164 (446)
                      ...+.
T Consensus       242 ~~a~~  246 (713)
T KOG2999|consen  242 RKAPD  246 (713)
T ss_pred             hhCCh
Confidence            66533

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=95.10  E-value=0.45  Score=37.51  Aligned_cols=147  Identities=9%  Similarity=0.031  Sum_probs=87.7

Q ss_pred             hhhhhHHHHHHhhcCC-CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc-CCCCccchhHHHHHHHHhhcCCc
Q 043676          169 QVRPALPALAQLVHSN-DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELL-GHPSPSVLTPALRTVGNIVTGDD  246 (446)
Q Consensus       169 ~~~~~~~~l~~ll~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~~~~~~~~~a~~~l~~l~~~~~  246 (446)
                      .....++.|..+++++ +..+|..++++++.+..-++...+.....  .+   ..- ...+......... ........ 
T Consensus         7 ~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~---~~~~~~~~~~~~~~~l~-~~~~~~~~-   79 (160)
T PF11865_consen    7 DYPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LD---SKSSENSNDESTDISLP-MMGISPSS-   79 (160)
T ss_pred             HhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CC---ccccccccccchhhHHh-hccCCCch-
Confidence            3467788889999876 69999999999999988877555422211  11   000 0111111111111 11111112 


Q ss_pred             hhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHH
Q 043676          247 FQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG-NREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISN  325 (446)
Q Consensus       247 ~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~  325 (446)
                         +...-..++..|+.+|+++.-..-...++.++.++... +.....++-  .++|.+++.++..++..++...+-|+.
T Consensus        80 ---ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~--~viP~~l~~i~~~~~~~~e~~~~qL~~  154 (160)
T PF11865_consen   80 ---EEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP--QVIPIFLRVIRTCPDSLREFYFQQLAD  154 (160)
T ss_pred             ---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH--HHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence               22333346788999998874455555677777777642 223333333  389999999997777888887777776


Q ss_pred             hc
Q 043676          326 AT  327 (446)
Q Consensus       326 l~  327 (446)
                      +.
T Consensus       155 lv  156 (160)
T PF11865_consen  155 LV  156 (160)
T ss_pred             HH
Confidence            64

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=95.05  E-value=2.1  Score=37.12  Aligned_cols=201  Identities=9%  Similarity=0.052  Sum_probs=133.1

Q ss_pred             hhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcH----HHHHHH-HhCcHHHHHHhcCCCC-ccchhHHHHHHHHhhcC
Q 043676          171 RPALPALAQLVHSNDEDVLTYACWSLSYLADGTND----KIQAVI-EAGVCPRLVELLGHPS-PSVLTPALRTVGNIVTG  244 (446)
Q Consensus       171 ~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~----~~~~~~-~~~~~~~l~~ll~~~~-~~~~~~a~~~l~~l~~~  244 (446)
                      .+.++.++..+..-+-+.+..++.+..++-...-+    ....+. ...++..++.-  ..+ +++.. +|+.+-.=|..
T Consensus        78 ~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~--~~~~~~iaL-~cg~mlrEcir  154 (342)
T KOG1566|consen   78 ADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG--YENTPEIAL-TCGNMLRECIR  154 (342)
T ss_pred             CCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh--hccchHHHH-HHHHHHHHHHh
Confidence            56678888888888888888888888887643221    111121 12333444433  111 22222 22222222344


Q ss_pred             CchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCC---hHH-HHHHHhcCCcchHHHHH
Q 043676          245 DDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGL---IRP-IVNLLQNAEFDTKKEAA  320 (446)
Q Consensus       245 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~---i~~-L~~ll~~~~~~v~~~a~  320 (446)
                      .+...+.++.+.-+.......+.+ ..++...|..+...+.......+..+...+.   ++. --.++.+++.-++..+.
T Consensus       155 he~LakiiL~s~~~~~FF~~vq~p-~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~  233 (342)
T KOG1566|consen  155 HEFLAKIILESTNFEKFFLYVQLP-NFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSL  233 (342)
T ss_pred             hHHHHHHHHcchhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHH
Confidence            556677777888888899999888 8888889999888887644555555554332   333 55688899999999999


Q ss_pred             HHHHHhccCCC--HHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhh
Q 043676          321 WAISNATSGGT--QEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEA  375 (446)
Q Consensus       321 ~aL~~l~~~~~--~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~  375 (446)
                      ..++.+.....  ....+++.+..-+..+..+|.++...++..|......+.....+
T Consensus       234 kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK  290 (342)
T KOG1566|consen  234 KLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNK  290 (342)
T ss_pred             HhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCC
Confidence            99999876432  23344444445688999999999999999988888776655444

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.99  E-value=0.98  Score=43.49  Aligned_cols=229  Identities=12%  Similarity=0.055  Sum_probs=130.8

Q ss_pred             HcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC---CCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCC-
Q 043676          128 SQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKP---EPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGT-  203 (446)
Q Consensus       128 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~-  203 (446)
                      +.|++..++..-..-+...+....-..|+.+.....   ........-.-|.+..-|+-.+..+|.+|+..+.++-.-. 
T Consensus       127 E~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~d  206 (1005)
T KOG1949|consen  127 ENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRD  206 (1005)
T ss_pred             hhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCC
Confidence            556666666544333333344444445555544431   1111222333466677788889999999999999886321 


Q ss_pred             c----HHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcC----ChHHHHHHhccCchHHHHH
Q 043676          204 N----DKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHG----AVPYLLDMLVHNHEEIIKK  275 (446)
Q Consensus       204 ~----~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~----~~~~l~~~l~~~~~~~v~~  275 (446)
                      +    +....+++ .-...+.++|.++-+.+|..|..-+....+..    ..++...    ++..+..-+..+...+||.
T Consensus       207 pd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f----We~iP~~i~~~ll~kI~d~~a~dt~s~VR~  281 (1005)
T KOG1949|consen  207 PDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSKF----WEMIPPTILIDLLKKITDELAFDTSSDVRC  281 (1005)
T ss_pred             CCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH----HHHcCHHHHHHHHHHHHHHhhhccchheeh
Confidence            1    22233343 44677899999999999999887776665421    1222222    3333333333332568888


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCC
Q 043676          276 EISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSD  355 (446)
Q Consensus       276 ~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~  355 (446)
                      .....|..+... |..- .+.+ -++|.+-..+.+....||-.+...|..+-..   . ...+..---.+.++.-|..++
T Consensus       282 svf~gl~~~l~n-p~sh-~~le-~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v---r-a~~f~~I~~~d~~l~~L~~d~  354 (1005)
T KOG1949|consen  282 SVFKGLPMILDN-PLSH-PLLE-QLLPALRYSLHDNSEKVRVAFVDMLLKIKAV---R-AAKFWKICPMDHILVRLETDS  354 (1005)
T ss_pred             hHhcCcHHHHcC-ccch-hHHH-HHHHhcchhhhccchhHHHHHHHHHHHHHhh---h-hhhhhccccHHHHHHHHhccc
Confidence            888888888643 3322 2222 2566677778888899999999988877432   1 111111112445555566666


Q ss_pred             HHHHHHHHHHHHH
Q 043676          356 PEIVTVCLIGLEN  368 (446)
Q Consensus       356 ~~~~~~~~~~l~~  368 (446)
                      .++....+..|-+
T Consensus       355 ~~v~rr~~~li~~  367 (1005)
T KOG1949|consen  355 RPVSRRLVSLIFN  367 (1005)
T ss_pred             cHHHHHHHHHHHH
Confidence            5555544444433

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.96  E-value=0.34  Score=39.32  Aligned_cols=114  Identities=14%  Similarity=0.177  Sum_probs=76.8

Q ss_pred             cCCCCccchhHHHHHHHHhhcCCchhhHHHHh----------------cCChHHHHHHhccC-----chHHHHHHHHHHH
Q 043676          223 LGHPSPSVLTPALRTVGNIVTGDDFQTQCIIN----------------HGAVPYLLDMLVHN-----HEEIIKKEISWII  281 (446)
Q Consensus       223 l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~----------------~~~~~~l~~~l~~~-----~~~~v~~~a~~~l  281 (446)
                      +.+++......++..|+|++.... ....+++                ...+..|+..+..+     ....--...+.++
T Consensus         4 i~~~~~~~adl~~MLLsNlT~~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl   82 (192)
T PF04063_consen    4 ITDPKSPLADLACMLLSNLTRSDS-GCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVL   82 (192)
T ss_pred             ecCCCcchHHHHHHHHHHhccchH-HHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHH
Confidence            334555667778889999988543 3332331                23566777777551     1334456688899


Q ss_pred             HHHhcCCHHHHHHHHHc--CC--hHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHH
Q 043676          282 SNITAGNREQIQAVIDA--GL--IRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVR  340 (446)
Q Consensus       282 ~~l~~~~~~~~~~~~~~--~~--i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~  340 (446)
                      .|++. .++.++.+.+.  +.  +..|+.++.+.+..-|.-++.+|.|++..  .+.-..+..
T Consensus        83 ~NlS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd--~~~H~~LL~  142 (192)
T PF04063_consen   83 ANLSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD--TDSHEWLLS  142 (192)
T ss_pred             HHhcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc--HhHHHHhcC
Confidence            99965 47788888753  34  78888888888778888999999999874  344455544

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=94.89  E-value=0.21  Score=34.99  Aligned_cols=84  Identities=10%  Similarity=0.142  Sum_probs=63.4

Q ss_pred             HHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHH
Q 043676          216 CPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAV  295 (446)
Q Consensus       216 ~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~  295 (446)
                      +...+..+.++.+.+|..++..|..+.....  ....-..+++..+...++++ ++.+--.|+.++..++...+.     
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~-----   76 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPD-----   76 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChH-----
Confidence            4556677888999999999999999998665  11222345778888999999 999999999999999875554     


Q ss_pred             HHcCChHHHHHHHhc
Q 043676          296 IDAGLIRPIVNLLQN  310 (446)
Q Consensus       296 ~~~~~i~~L~~ll~~  310 (446)
                         .+++.|++...+
T Consensus        77 ---~vl~~L~~~y~~   88 (92)
T PF10363_consen   77 ---EVLPILLDEYAD   88 (92)
T ss_pred             ---HHHHHHHHHHhC
Confidence               256666665543

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=94.87  E-value=2.6  Score=40.90  Aligned_cols=138  Identities=14%  Similarity=0.141  Sum_probs=95.1

Q ss_pred             hhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC-CCCccchhHHHHHHHHhhcCCc
Q 043676          168 DQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLTPALRTVGNIVTGDD  246 (446)
Q Consensus       168 ~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~~~~~a~~~l~~l~~~~~  246 (446)
                      .....++|.|...+++.+..+++.++..+..++..-+   ...++.-++|.+..+.. +.+..++..++-|++.+....+
T Consensus       385 ~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD  461 (700)
T KOG2137|consen  385 EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD  461 (700)
T ss_pred             HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH
Confidence            4457788888899999999999999999999887655   23566678888877733 3677788899999998884222


Q ss_pred             hhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcc
Q 043676          247 FQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFD  314 (446)
Q Consensus       247 ~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~  314 (446)
                      .    ..-...+..+....+.. ++.+......+..++....... ..++...++|.++.+...+.-.
T Consensus       462 ~----~~v~d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L~  523 (700)
T KOG2137|consen  462 K----AAVLDELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSLN  523 (700)
T ss_pred             H----HHhHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccccc
Confidence            1    11112344555555566 7888887777777776532322 3344457888888877765433

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=94.78  E-value=2.4  Score=36.56  Aligned_cols=225  Identities=13%  Similarity=0.057  Sum_probs=127.8

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcC--CCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676            6 ALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMR--EDYPQLQYEAAWVLINIASGTSENTNV   83 (446)
Q Consensus         6 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~~~~~~a~~~L~~l~~~~~~~~~~   83 (446)
                      .|=..|.++|+..|..|+..|...+..-....    ....-+..|++++.+  .+ ......++.++..+.....-....
T Consensus         3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~----L~~~ev~~L~~F~~~rl~D-~~~~~~~l~gl~~L~~~~~~~~~~   77 (262)
T PF14500_consen    3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF----LSRQEVQVLLDFFCSRLDD-HACVQPALKGLLALVKMKNFSPES   77 (262)
T ss_pred             chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh----ccHHHHHHHHHHHHHHhcc-HhhHHHHHHHHHHHHhCcCCChhh
Confidence            34456889999999999999999887642111    111124444444322  23 333444466666666422111111


Q ss_pred             HHhcCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676           84 VIDHGAVPIFVKLLS--SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG  161 (446)
Q Consensus        84 ~~~~~~i~~L~~~L~--~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  161 (446)
                        ...++..+.+-..  +.....|..+...+..+.......- .-...+.+..+++.+....||...-.+...+..+...
T Consensus        78 --~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l-~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~  154 (262)
T PF14500_consen   78 --AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREAL-QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE  154 (262)
T ss_pred             --HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHH-HhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence              1112333333222  2346678888888888875433211 1112345778888887778999888888888888776


Q ss_pred             CCCCChhhhhhhHHHHHHhhc-----C-CCH--hHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhH
Q 043676          162 KPEPPFDQVRPALPALAQLVH-----S-NDE--DVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTP  233 (446)
Q Consensus       162 ~~~~~~~~~~~~~~~l~~ll~-----~-~~~--~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~  233 (446)
                      -+.  ..........+.-++-     . +|+  -.++..-..|.......+.     +..-.+|.|++-|.++.+.++..
T Consensus       155 ~~~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~-----fa~~~~p~LleKL~s~~~~~K~D  227 (262)
T PF14500_consen  155 FDI--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPL-----FAPFAFPLLLEKLDSTSPSVKLD  227 (262)
T ss_pred             ccc--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHh-----hHHHHHHHHHHHHcCCCcHHHHH
Confidence            542  2222333333333321     1 122  1233333344443333332     23367899999999999999999


Q ss_pred             HHHHHHHhhcCC
Q 043676          234 ALRTVGNIVTGD  245 (446)
Q Consensus       234 a~~~l~~l~~~~  245 (446)
                      ++.+|...+...
T Consensus       228 ~L~tL~~c~~~y  239 (262)
T PF14500_consen  228 SLQTLKACIENY  239 (262)
T ss_pred             HHHHHHHHHHHC
Confidence            999998877543

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=94.74  E-value=2.5  Score=39.30  Aligned_cols=233  Identities=12%  Similarity=0.062  Sum_probs=131.5

Q ss_pred             HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 043676           84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKP  163 (446)
Q Consensus        84 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  163 (446)
                      .++...+..|+.++.++|+.-|.....++.++.......|..+.. .....+.+.+.......-...++..++.+..+..
T Consensus       129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~  207 (409)
T PF01603_consen  129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETERHNGIAELLEILGSIINGFA  207 (409)
T ss_dssp             TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--
T ss_pred             HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcccccCHHHHHHHHHHHHhccC
Confidence            445566888999999999999999999999887655555555543 2345566666445566677788888888887753


Q ss_pred             CCC-hhhhhhhHHHHHHhhcCCC-HhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHh
Q 043676          164 EPP-FDQVRPALPALAQLVHSND-EDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI  241 (446)
Q Consensus       164 ~~~-~~~~~~~~~~l~~ll~~~~-~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l  241 (446)
                      ..- .....-....++.+.+... .........++......++.....+     +..++..=-..+..-...-+.-+..+
T Consensus       208 ~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-----i~~llk~WP~t~s~Kev~FL~el~~i  282 (409)
T PF01603_consen  208 VPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-----IKGLLKHWPKTNSQKEVLFLNELEEI  282 (409)
T ss_dssp             SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH-----HHHHHHHS-SS-HHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCCchhHHHHHHHHHHH
Confidence            222 2233344455666666553 3445555666666555555444322     23333332223333233344555555


Q ss_pred             hcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHc---CChHHHHHHHhc----C-Cc
Q 043676          242 VTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDA---GLIRPIVNLLQN----A-EF  313 (446)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~ll~~----~-~~  313 (446)
                      ....+...-.-+...+...+...+.++ +..|.+.|+....     ++... .++..   .++|.+..-+..    . +.
T Consensus       283 l~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~-----n~~~~-~li~~~~~~i~p~i~~~L~~~~~~HWn~  355 (409)
T PF01603_consen  283 LEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWN-----NEYFL-SLISQNSRVILPIIFPALYRNSKNHWNQ  355 (409)
T ss_dssp             HTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGG-----SHHHH-HHHHCTHHHHHHHHHHHHSSTTSS-SST
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHC-----CHHHH-HHHHhChHHHHHHHHHHHHHHHHHHhhH
Confidence            553332222222334677788888888 8888888775443     22222 22221   256777766543    2 56


Q ss_pred             chHHHHHHHHHHhccC
Q 043676          314 DTKKEAAWAISNATSG  329 (446)
Q Consensus       314 ~v~~~a~~aL~~l~~~  329 (446)
                      .++..|..++.-+...
T Consensus       356 ~Vr~~a~~vl~~l~~~  371 (409)
T PF01603_consen  356 TVRNLAQNVLKILMEM  371 (409)
T ss_dssp             THHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            7888888888877654

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=94.71  E-value=0.9  Score=36.50  Aligned_cols=144  Identities=15%  Similarity=0.176  Sum_probs=87.7

Q ss_pred             chhHHHHHHHHhhcC-CchhhH----HHH-h-----cCChHH-HHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043676          230 VLTPALRTVGNIVTG-DDFQTQ----CII-N-----HGAVPY-LLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVID  297 (446)
Q Consensus       230 ~~~~a~~~l~~l~~~-~~~~~~----~~~-~-----~~~~~~-l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~  297 (446)
                      +|..|+.+|..++.. ++....    .++ +     ...-+. +--++.++ ++++|..|+.++..+..+........-+
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp-~~kvR~aA~~~l~~lL~gsk~~L~~Ae~   80 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDP-SPKVRAAAASALAALLEGSKPFLAQAEE   80 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCC-chhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence            567777777777765 221111    111 1     112233 44455666 9999999999999998876554443322


Q ss_pred             cC-------------------ChHHHHHHHhcC-CcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHH
Q 043676          298 AG-------------------LIRPIVNLLQNA-EFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPE  357 (446)
Q Consensus       298 ~~-------------------~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~  357 (446)
                      .+                   +-..|+..++.+ +..+....++++..+.....-+..+.=.-..++..+..++.+.|++
T Consensus        81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~  160 (182)
T PF13251_consen   81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN  160 (182)
T ss_pred             cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence            11                   122344445444 6778888999999888764433322101112455566677889999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 043676          358 IVTVCLIGLENILKVGE  374 (446)
Q Consensus       358 ~~~~~~~~l~~l~~~~~  374 (446)
                      ++..++.++..++...+
T Consensus       161 v~v~~l~~~~~l~s~~~  177 (182)
T PF13251_consen  161 VRVAALSCLGALLSVQP  177 (182)
T ss_pred             HHHHHHHHHHHHHcCCC
Confidence            99999999988876543

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=94.70  E-value=5.5  Score=40.25  Aligned_cols=241  Identities=16%  Similarity=0.212  Sum_probs=145.0

Q ss_pred             hhhHHHHHHhhcC-----CCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC----CCC----ccchhHHHHH
Q 043676          171 RPALPALAQLVHS-----NDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLG----HPS----PSVLTPALRT  237 (446)
Q Consensus       171 ~~~~~~l~~ll~~-----~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~----~~~----~~~~~~a~~~  237 (446)
                      .+++..++.++.+     ........++..|...+.... ..+.+.+.+.++.|+..+.    .+.    ..+.+..+.+
T Consensus       116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~-NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I  194 (802)
T PF13764_consen  116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKV-NRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI  194 (802)
T ss_pred             CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHH-HHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence            4667777777764     245667777777877777644 5556888999999888774    333    4566666666


Q ss_pred             HHHhhcCCchh-h---HHHH--------hcCChHHHHHHhccC---chHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChH
Q 043676          238 VGNIVTGDDFQ-T---QCII--------NHGAVPYLLDMLVHN---HEEIIKKEISWIISNITAGNREQIQAVIDAGLIR  302 (446)
Q Consensus       238 l~~l~~~~~~~-~---~~~~--------~~~~~~~l~~~l~~~---~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~  302 (446)
                      +..+....... .   ....        ....+..+++.+.++   .++.+....+.+|.+++.++++..+.+++  .+.
T Consensus       195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~--~F~  272 (802)
T PF13764_consen  195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE--HFK  272 (802)
T ss_pred             HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH--HHH
Confidence            66665321110 0   0000        111255666666544   15788889999999999999988887776  334


Q ss_pred             HHHHHHhcC--CcchHHHHHHHHHHhccCC-----CHHHHHHHHHcCChHHHHhcccCC--------CHH--------HH
Q 043676          303 PIVNLLQNA--EFDTKKEAAWAISNATSGG-----TQEQIKHLVREGCVKPLCDLLLCS--------DPE--------IV  359 (446)
Q Consensus       303 ~L~~ll~~~--~~~v~~~a~~aL~~l~~~~-----~~~~~~~l~~~~~i~~L~~ll~~~--------~~~--------~~  359 (446)
                      +.+++=+-.  ...--...+..++.++.+.     .......+++.|++...++++...        +++        -.
T Consensus       273 p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psL  352 (802)
T PF13764_consen  273 PYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSL  352 (802)
T ss_pred             HhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcH
Confidence            333322211  1111123355666665532     235567778889998888877432        222        22


Q ss_pred             HHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhc-CCCHHHHHHHHHHHHHhcCCC
Q 043676          360 TVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQS-HDNNEIHEKSVKIFKTYWCGR  428 (446)
Q Consensus       360 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~-~~~~~v~~~a~~~l~~~~~~~  428 (446)
                      ..++..|.-+....+..              +.+...++++.+..|-. +....|=..|..+|+.+-+.+
T Consensus       353 p~iL~lL~GLa~gh~~t--------------Q~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~  408 (802)
T PF13764_consen  353 PYILRLLRGLARGHEPT--------------QLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE  408 (802)
T ss_pred             HHHHHHHHHHHhcCHHH--------------HHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence            34566666655544332              23345677888877744 336677788888888776633

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=94.68  E-value=1.8  Score=35.29  Aligned_cols=146  Identities=16%  Similarity=0.142  Sum_probs=92.9

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV   83 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   83 (446)
                      ++.+++...+++..++..|+..+.-+....--.+.      ..+|.++.+..+++ +.++..|...+..+....+.....
T Consensus        10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~------~cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~~   82 (187)
T PF12830_consen   10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPK------QCVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVES   82 (187)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH------HHHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHHH
Confidence            46677778899999999999999987775522232      36999999999999 999999999999998866555444


Q ss_pred             HHhcCChHHHHHhh---CCCCH-HH---HHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcccc-------chhHHH
Q 043676           84 VIDHGAVPIFVKLL---SSPSD-DV---REQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHA-------KLSMLR  149 (446)
Q Consensus        84 ~~~~~~i~~L~~~L---~~~~~-~v---~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-------~~~~~~  149 (446)
                      -...| +..-..+-   ..... ..   ....+..+..+...+...|..+     +..+++.+....       .+.-..
T Consensus        83 ~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l~  156 (187)
T PF12830_consen   83 RYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDLD  156 (187)
T ss_pred             HHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHHH
Confidence            33334 33333322   11111 11   4555666777776555555554     456777663322       233344


Q ss_pred             HHHHHHHHhhcCC
Q 043676          150 NATRTLSNFCRGK  162 (446)
Q Consensus       150 ~a~~~L~~l~~~~  162 (446)
                      ....+..|++.-+
T Consensus       157 ~~~Fla~nLA~l~  169 (187)
T PF12830_consen  157 FLLFLAENLATLP  169 (187)
T ss_pred             HHHHHHHHHhcCC
Confidence            5555555665543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=94.67  E-value=1.1  Score=44.71  Aligned_cols=195  Identities=18%  Similarity=0.205  Sum_probs=117.6

Q ss_pred             HHHHHcCCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCCh--HHHHHHhccccch
Q 043676           69 VLINIASGTSENTNVVIDHGAVPIFVKLLSS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGAL--IPLLAELNEHAKL  145 (446)
Q Consensus        69 ~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i--~~l~~~l~~~~~~  145 (446)
                      ++.++...+++....+++.|++..+.+.++. ...+++..++..+.|++...+. +........+  ..+-.++.+..+.
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~-~~~~~~~~~~~~~~f~~~~~~w~~~  572 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLEL-RELLMIFEFIDFSVFKVLLNKWDSI  572 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHHHHhhcchh
Confidence            6778888899999999999999999999986 6688999999999999954432 1111111111  1333344333444


Q ss_pred             hHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC
Q 043676          146 SMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH  225 (446)
Q Consensus       146 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~  225 (446)
                      +.-..++..|..+..+.+. ..  ..+.           -+.+.+....++......   ........-+.+.+..++..
T Consensus       573 ersY~~~siLa~ll~~~~~-~~--~~~~-----------r~~~~~~l~e~i~~~~~~---~~~~~~~~~f~~~~~~il~~  635 (699)
T KOG3665|consen  573 ERSYNAASILALLLSDSEK-TT--ECVF-----------RNSVNELLVEAISRWLTS---EIRVINDRSFFPRILRILRL  635 (699)
T ss_pred             hHHHHHHHHHHHHHhCCCc-Cc--cccc-----------hHHHHHHHHHHhhccCcc---ceeehhhhhcchhHHHHhcc
Confidence            6677788888877776532 00  0000           112222222222222211   11111121222214444444


Q ss_pred             -CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHH
Q 043676          226 -PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWII  281 (446)
Q Consensus       226 -~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l  281 (446)
                       ..+.....|++++.++...+++..+.+.+.++++.+.+.-.......++..+...+
T Consensus       636 s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  692 (699)
T KOG3665|consen  636 SKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI  692 (699)
T ss_pred             cCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence             56677889999999999988888888888899888887765553444555554444

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.63  E-value=0.74  Score=44.28  Aligned_cols=150  Identities=17%  Similarity=0.142  Sum_probs=100.8

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHHcC-CCh----hhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChH
Q 043676           47 VPRFVEFLMREDYPQLQYEAAWVLINIAS-GTS----ENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPR  121 (446)
Q Consensus        47 ~~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~----~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~  121 (446)
                      =|.|-+-|+-++ ..+|..|+..+.+..- .+|    +..+.+++.. ...+.++|+++-+.+|..|..-++.+.+.-.+
T Consensus       176 ~p~l~R~L~a~N-s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQ-f~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe  253 (1005)
T KOG1949|consen  176 KPILWRGLKARN-SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQ-FEELYSLLEDPYPMVRSTAILGVCKITSKFWE  253 (1005)
T ss_pred             hHHHHHhhccCc-hhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHH-HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence            345556677788 7999999999999774 222    3345555543 67889999999999999998888777633211


Q ss_pred             HHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhc
Q 043676          122 CRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLA  200 (446)
Q Consensus       122 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~  200 (446)
                      .-..-.-...+..+..-+..++..+++......|..+..++.  .......++|.+-..+.++...+|..+...|..+-
T Consensus       254 ~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~--sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik  330 (1005)
T KOG1949|consen  254 MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL--SHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK  330 (1005)
T ss_pred             HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCcc--chhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence            100000111233444445455566888888888888887752  22334566778888888889999988888776654

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=94.63  E-value=0.54  Score=44.15  Aligned_cols=112  Identities=13%  Similarity=0.176  Sum_probs=77.4

Q ss_pred             hccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHH
Q 043676          199 LADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEIS  278 (446)
Q Consensus       199 l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~  278 (446)
                      .....++... ++. |++..++.-+.+++..+|..++.+|+.+...-. .....+-.+++..+.+-+-+. .+.||.+|+
T Consensus        78 ~~~~dpeg~~-~V~-~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~-eIDe~l~N~L~ekl~~R~~DR-E~~VR~eAv  153 (885)
T COG5218          78 DMPDDPEGEE-LVA-GTFYHLLRGTESKDKKVRKRSLQILALLSDVVR-EIDEVLANGLLEKLSERLFDR-EKAVRREAV  153 (885)
T ss_pred             cCCCChhhhH-HHH-HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHhcc-hHHHHHHHH
Confidence            3334443332 443 778888888889999999999999998886443 333455566778888887777 889999999


Q ss_pred             HHHHHHhc--CCHHHHHHHHHcCChHHHHHHHhc-CCcchHHHHHH
Q 043676          279 WIISNITA--GNREQIQAVIDAGLIRPIVNLLQN-AEFDTKKEAAW  321 (446)
Q Consensus       279 ~~l~~l~~--~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~  321 (446)
                      .+|+.+-.  +++++       .+...|..+++. ++.+||..|+.
T Consensus       154 ~~L~~~Qe~~~neen-------~~~n~l~~~vqnDPS~EVRr~all  192 (885)
T COG5218         154 KVLCYYQEMELNEEN-------RIVNLLKDIVQNDPSDEVRRLALL  192 (885)
T ss_pred             HHHHHHHhccCChHH-------HHHHHHHHHHhcCcHHHHHHHHHH
Confidence            99999864  34443       234456666664 35677766553

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=94.60  E-value=1.2  Score=41.45  Aligned_cols=228  Identities=16%  Similarity=0.134  Sum_probs=132.7

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCCh-----
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTS-----   78 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~-----   78 (446)
                      +..|+..+.|+|+..|......|.++-..  ....+..+...+...+.+.+.....+.-....+..++.+..+-.     
T Consensus       135 i~~Ll~l~~S~D~rER~~lk~~l~~iy~k--~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~  212 (409)
T PF01603_consen  135 IKKLLELFDSPDPRERDYLKTILHRIYGK--FPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKE  212 (409)
T ss_dssp             HHHHHHTTTSSTHHHHHHHHHHHHHHHHH---TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--H
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcH
Confidence            45788899999999999999999887664  34455566666778888888765546677788889999887432     


Q ss_pred             hhHHHHHhcCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHH
Q 043676           79 ENTNVVIDHGAVPIFVKLLSSPS-DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSN  157 (446)
Q Consensus        79 ~~~~~~~~~~~i~~L~~~L~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  157 (446)
                      ++...+     ...++.+.+.+. ......-..++..++..++.....+     +..+++.. ...+..-...-+.-+..
T Consensus       213 eh~~fl-----~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-----i~~llk~W-P~t~s~Kev~FL~el~~  281 (409)
T PF01603_consen  213 EHKQFL-----RKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-----IKGLLKHW-PKTNSQKEVLFLNELEE  281 (409)
T ss_dssp             HHHHHH-----HHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH-----HHHHHHHS--SS-HHHHHHHHHHHHH
T ss_pred             HHHHHH-----HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhC-CCCCchhHHHHHHHHHH
Confidence            222222     344555555533 2223444455555554444433332     33444444 22333333333444444


Q ss_pred             hhcCCCCCCh-hhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHh---CcHHHHHHhcCC-----CCc
Q 043676          158 FCRGKPEPPF-DQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEA---GVCPRLVELLGH-----PSP  228 (446)
Q Consensus       158 l~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~---~~~~~l~~ll~~-----~~~  228 (446)
                      +...-+.... .....+...+..++.+.+..|.+.|+..+.|     +... .++..   .+++.+..-+..     =+.
T Consensus       282 il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~-~li~~~~~~i~p~i~~~L~~~~~~HWn~  355 (409)
T PF01603_consen  282 ILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN-----EYFL-SLISQNSRVILPIIFPALYRNSKNHWNQ  355 (409)
T ss_dssp             HHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHH-HHHHCTHHHHHHHHHHHHSSTTSS-SST
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHH-HHHHhChHHHHHHHHHHHHHHHHHHhhH
Confidence            4443321111 2234566777788889999999998876643     2122 23322   356666666544     145


Q ss_pred             cchhHHHHHHHHhhcCCchhhH
Q 043676          229 SVLTPALRTVGNIVTGDDFQTQ  250 (446)
Q Consensus       229 ~~~~~a~~~l~~l~~~~~~~~~  250 (446)
                      .++..|..++..+...++...+
T Consensus       356 ~Vr~~a~~vl~~l~~~d~~lf~  377 (409)
T PF01603_consen  356 TVRNLAQNVLKILMEMDPKLFD  377 (409)
T ss_dssp             THHHHHHHHHHHHHTTSHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCHHHHH
Confidence            6888899998888887765443

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.57  E-value=0.44  Score=38.69  Aligned_cols=82  Identities=15%  Similarity=0.120  Sum_probs=61.2

Q ss_pred             CCHHHHHHhhcC-----CCChHHHHHHHHHHHHHcCCChhhHHHHHhc--CC--hHHHHHhhCCCCHHHHHHHHHHHHHh
Q 043676           45 GVVPRFVEFLMR-----EDYPQLQYEAAWVLINIASGTSENTNVVIDH--GA--VPIFVKLLSSPSDDVREQAVWALGNV  115 (446)
Q Consensus        45 ~~~~~L~~ll~~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~--i~~L~~~L~~~~~~v~~~a~~~l~~l  115 (446)
                      ..+..|++.+..     .+..+--...+.+|.|++. .++.|..+.+.  +.  +..|+.++.+.+..-|..++.+|.|+
T Consensus        52 ~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNc  130 (192)
T PF04063_consen   52 FYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNC  130 (192)
T ss_pred             HHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHh
Confidence            356677776655     1224556778899999999 89999999865  44  77888888888888888999999999


Q ss_pred             hCCChHHHHHHHH
Q 043676          116 AGDSPRCRDLVLS  128 (446)
Q Consensus       116 ~~~~~~~~~~~~~  128 (446)
                      |.+.... ..+..
T Consensus       131 cFd~~~H-~~LL~  142 (192)
T PF04063_consen  131 CFDTDSH-EWLLS  142 (192)
T ss_pred             hccHhHH-HHhcC
Confidence            9766543 34333

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=94.51  E-value=2  Score=42.71  Aligned_cols=198  Identities=16%  Similarity=0.130  Sum_probs=108.4

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCC----CCHHHHHHHHHHHHHhhCCCh-
Q 043676           46 VVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSS----PSDDVREQAVWALGNVAGDSP-  120 (446)
Q Consensus        46 ~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~----~~~~v~~~a~~~l~~l~~~~~-  120 (446)
                      .+..+.+++.+..  --...|...|..+..........     .+..+..+++.    .++.++..|+.+++.+....- 
T Consensus       396 av~~i~~~I~~~~--~~~~ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~  468 (618)
T PF01347_consen  396 AVKFIKDLIKSKK--LTDDEAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV  468 (618)
T ss_dssp             HHHHHHHHHHTT---S-HHHHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCC--CCHHHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence            3555666666644  11223444444444322122222     35666666664    457788888888887762110 


Q ss_pred             --------HHHHHHHHcCChHHHHHHhc---cccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCC---CH
Q 043676          121 --------RCRDLVLSQGALIPLLAELN---EHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSN---DE  186 (446)
Q Consensus       121 --------~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~---~~  186 (446)
                              ...........++.+...+.   ...+..-+..++.+|+|+-.          ...++.+..++...   ..
T Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~  538 (618)
T PF01347_consen  469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPH  538 (618)
T ss_dssp             T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-H
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccch
Confidence                    01111223345667777664   23455777889999999853          24678888888766   68


Q ss_pred             hHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC--CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHH
Q 043676          187 DVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDM  264 (446)
Q Consensus       187 ~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~  264 (446)
                      .+|..|++++..++...+....        +.+.+++.+  .+.++|..|+..|..   .+|...       .+..+...
T Consensus       539 ~~R~~Ai~Alr~~~~~~~~~v~--------~~l~~I~~n~~e~~EvRiaA~~~lm~---~~P~~~-------~l~~i~~~  600 (618)
T PF01347_consen  539 FIRVAAIQALRRLAKHCPEKVR--------EILLPIFMNTTEDPEVRIAAYLILMR---CNPSPS-------VLQRIAQS  600 (618)
T ss_dssp             HHHHHHHHTTTTGGGT-HHHHH--------HHHHHHHH-TTS-HHHHHHHHHHHHH---T---HH-------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCcHHHH--------HHHHHHhcCCCCChhHHHHHHHHHHh---cCCCHH-------HHHHHHHH
Confidence            8999999999988777665444        556666655  445677777655532   223222       35667777


Q ss_pred             hccCchHHHHHHHH
Q 043676          265 LVHNHEEIIKKEIS  278 (446)
Q Consensus       265 l~~~~~~~v~~~a~  278 (446)
                      +..+.+..|.....
T Consensus       601 l~~E~~~QV~sfv~  614 (618)
T PF01347_consen  601 LWNEPSNQVASFVY  614 (618)
T ss_dssp             HTT-S-HHHHHHHH
T ss_pred             HhhCchHHHHHHHH
Confidence            77664666655443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=94.49  E-value=0.39  Score=36.65  Aligned_cols=75  Identities=9%  Similarity=-0.009  Sum_probs=62.9

Q ss_pred             ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccC------CCHHHHHHHHHHHHHHHHhh
Q 043676          300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC------SDPEIVTVCLIGLENILKVG  373 (446)
Q Consensus       300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~~~~~~~~~l~~l~~~~  373 (446)
                      .+..+.+-++++++.++..|+..|-.+..++.......+...+++..|+.++..      .++.|+..++..+.......
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  118 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL  118 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            566677788899999999999999999998888888888888889899999853      56889999999998876544


Q ss_pred             h
Q 043676          374 E  374 (446)
Q Consensus       374 ~  374 (446)
                      .
T Consensus       119 ~  119 (139)
T cd03567         119 P  119 (139)
T ss_pred             c
Confidence            3

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=94.34  E-value=0.33  Score=33.98  Aligned_cols=73  Identities=8%  Similarity=0.021  Sum_probs=57.5

Q ss_pred             hHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhh
Q 043676          301 IRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAE  376 (446)
Q Consensus       301 i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~  376 (446)
                      +...+..+.++.+.+|..++..|.++....+   .......+++..+...++++|+-+..+|+++|..+....+..
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~   77 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE   77 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH
Confidence            4456677788889999999999999988755   111122346788888999999999999999999998876663

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=94.25  E-value=5.2  Score=38.09  Aligned_cols=252  Identities=13%  Similarity=0.110  Sum_probs=126.2

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHH
Q 043676           15 DNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFV   94 (446)
Q Consensus        15 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~   94 (446)
                      ..+.|..+...+..+.... ... ....+.    .+.+.+..+..++.-..-+.+|..++.+..+.  ...+.++.+.|.
T Consensus        42 p~e~R~~~~~ll~~~i~~~-~~~-~~~~R~----~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~  113 (464)
T PF11864_consen   42 PSEARRAALELLIACIKRQ-DSS-SGLMRA----EFFRDISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLL  113 (464)
T ss_pred             CHHHHHHHHHHHHHHHHcc-ccc-cHHHHH----HHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHH
Confidence            4578888888888877764 221 111121    12222333222333334445555555532222  224556677777


Q ss_pred             HhhCCC---------------------------CHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhH
Q 043676           95 KLLSSP---------------------------SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSM  147 (446)
Q Consensus        95 ~~L~~~---------------------------~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~  147 (446)
                      ..+..-                           +.......+..+.|+...+...-+.-.-.+.+..++.+..+..++..
T Consensus       114 ~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~d  193 (464)
T PF11864_consen  114 SWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDD  193 (464)
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHH
Confidence            666320                           22233344555555554332211111112244555555434445555


Q ss_pred             HHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC-
Q 043676          148 LRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHP-  226 (446)
Q Consensus       148 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-  226 (446)
                      ...++..+-.+.... .........++..|......  .+....+-.++.||+......       ..+..|..+|.++ 
T Consensus       194 i~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~--~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~  263 (464)
T PF11864_consen  194 IEACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNS--VSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPD  263 (464)
T ss_pred             HHHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhcc--cccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccC
Confidence            566777766666553 22223334455555554332  266667777888887643321       3345677777332 


Q ss_pred             -----CccchhHHHHHHHHhhcCCchhhHHHHh-c--CChHHHHHHhccCchHHHHHHHHHHHHHHh
Q 043676          227 -----SPSVLTPALRTVGNIVTGDDFQTQCIIN-H--GAVPYLLDMLVHNHEEIIKKEISWIISNIT  285 (446)
Q Consensus       227 -----~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~--~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~  285 (446)
                           +..+..-|+..+..+..+..+....-+. .  -+++.+...++.. +..+-.+....+.++.
T Consensus       264 ~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll  329 (464)
T PF11864_consen  264 PQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLL  329 (464)
T ss_pred             ccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHH
Confidence                 2334456777777776555222221121 1  2667777777766 5566666666666665

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=94.13  E-value=3.2  Score=35.24  Aligned_cols=203  Identities=14%  Similarity=0.094  Sum_probs=116.5

Q ss_pred             HHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHH
Q 043676          133 IPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIE  212 (446)
Q Consensus       133 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~  212 (446)
                      +.++.-+.+..+++.+...+.+|..++.+.   . .....++..+..+...+......-+.+.+..+...++...     
T Consensus         3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~---~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-----   73 (234)
T PF12530_consen    3 PLLLYKLGKISDPELQLPLLEALPSLACHK---N-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-----   73 (234)
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHhccC---c-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-----
Confidence            445555667789999999999999999886   1 3445667778888888777777777777877776655322     


Q ss_pred             hCcHHHHHHh-----c---CC--CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHh-ccCchHHHHHHHHHHH
Q 043676          213 AGVCPRLVEL-----L---GH--PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDML-VHNHEEIIKKEISWII  281 (446)
Q Consensus       213 ~~~~~~l~~l-----l---~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~v~~~a~~~l  281 (446)
                       +.+..++..     .   .+  ...+.......++..++...+....     .+++.+..++ ++. ++.++..++.++
T Consensus        74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~-----~ll~~ls~~L~~~~-~~~~~alale~l  146 (234)
T PF12530_consen   74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGV-----DLLPLLSGCLNQSC-DEVAQALALEAL  146 (234)
T ss_pred             -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHH-----HHHHHHHHHHhccc-cHHHHHHHHHHH
Confidence             233333332     1   11  1122333345577777776666332     3567788888 666 888899999999


Q ss_pred             HHHhcCCHHHHHHHHHcCChHHHHHHHhcC-CcchHHHHHHHHHHhccCC-CHHHHHHHHHcCChHHHHhcccCCCHH
Q 043676          282 SNITAGNREQIQAVIDAGLIRPIVNLLQNA-EFDTKKEAAWAISNATSGG-TQEQIKHLVREGCVKPLCDLLLCSDPE  357 (446)
Q Consensus       282 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~  357 (446)
                      ..++...--   .+.  .....+..-+..+ .+.+.+..+..+..+.... +.+.... ....++..+.++..+.+.+
T Consensus       147 ~~Lc~~~vv---d~~--s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~-~~~~~l~~lW~~~~~~~~~  218 (234)
T PF12530_consen  147 APLCEAEVV---DFY--SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEE-LKRQILQLLWEYTSSSDVN  218 (234)
T ss_pred             HHHHHHhhc---cHH--HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhH-HHHHHHHHHHhhccccccc
Confidence            999842111   111  1233333333322 4444444333333332221 2222222 2334677777777666543

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=94.06  E-value=0.55  Score=37.32  Aligned_cols=114  Identities=14%  Similarity=0.119  Sum_probs=78.9

Q ss_pred             CcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc---CCHH
Q 043676          214 GVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA---GNRE  290 (446)
Q Consensus       214 ~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~---~~~~  290 (446)
                      .+...+..++.++++.-|..++..+...+..++...-.---...+..++.+++.+.+..+++.++.++..+..   +.++
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~  104 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT  104 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence            5667788999999999999999988888876532111111234678889999887677889999999998874   4455


Q ss_pred             HHHHHHHc---CChHHHHHHHhcCCcchHHHHHHHHHHhccC
Q 043676          291 QIQAVIDA---GLIRPIVNLLQNAEFDTKKEAAWAISNATSG  329 (446)
Q Consensus       291 ~~~~~~~~---~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  329 (446)
                      ..+.+...   ++++.++++++.  ......++.+|..+...
T Consensus       105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~  144 (165)
T PF08167_consen  105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH  144 (165)
T ss_pred             hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence            44444331   345555555543  56777788888877664

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=94.04  E-value=4.7  Score=36.86  Aligned_cols=148  Identities=13%  Similarity=0.091  Sum_probs=89.7

Q ss_pred             HHHHhCcHHHHHHhcCCCC-ccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhc----c-CchHHHHHHHHHHHH
Q 043676          209 AVIEAGVCPRLVELLGHPS-PSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLV----H-NHEEIIKKEISWIIS  282 (446)
Q Consensus       209 ~~~~~~~~~~l~~ll~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~----~-~~~~~v~~~a~~~l~  282 (446)
                      .+.+.+=.+.+-.-+...+ ..-|..|+..+..++...+.....++    ...+-.++.    + ..++.-+..|+..++
T Consensus       205 ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~  280 (370)
T PF08506_consen  205 ELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIG  280 (370)
T ss_dssp             HHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHH
Confidence            3555565666666665433 34566788888888875444333222    223333333    2 226778888999999


Q ss_pred             HHhcCCHH------------HHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhc
Q 043676          283 NITAGNRE------------QIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDL  350 (446)
Q Consensus       283 ~l~~~~~~------------~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~l  350 (446)
                      .++.....            ....+....++|.|. --.+..|-++..|++.+..+-..-.++....     +++.++..
T Consensus       281 ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~-----~~~~l~~~  354 (370)
T PF08506_consen  281 ALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQ-----IFPLLVNH  354 (370)
T ss_dssp             HHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHH-----HHHHHHHH
T ss_pred             HHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHH
Confidence            99863211            234455556677665 2223467789999999998877655544333     78999999


Q ss_pred             ccCCCHHHHHHHHHHH
Q 043676          351 LLCSDPEIVTVCLIGL  366 (446)
Q Consensus       351 l~~~~~~~~~~~~~~l  366 (446)
                      |.+++.-|+..|..++
T Consensus       355 L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  355 LQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             TTSS-HHHHHHHHHHH
T ss_pred             hCCCCcchhhhhhhhC
Confidence            9999998888877654

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=93.94  E-value=0.3  Score=37.62  Aligned_cols=75  Identities=17%  Similarity=0.199  Sum_probs=62.3

Q ss_pred             ChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcC-CCHHHHHHHHHHH
Q 043676          343 CVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSH-DNNEIHEKSVKIF  421 (446)
Q Consensus       343 ~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~-~~~~v~~~a~~~l  421 (446)
                      ++..|..-+.++++.++..++..|..+++.++..            |...+...++++.|..+... .++.|+++...++
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~------------fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li  105 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKR------------FHQEVASRDFTQELKKLINDRVHPTVKEKLREVV  105 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH------------HHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence            3555666677889999999999999999988875            67888888899999999877 7899999999999


Q ss_pred             HHhcCCCC
Q 043676          422 KTYWCGRN  429 (446)
Q Consensus       422 ~~~~~~~~  429 (446)
                      ..+...-.
T Consensus       106 ~~W~~~f~  113 (144)
T cd03568         106 KQWADEFK  113 (144)
T ss_pred             HHHHHHhC
Confidence            98854443

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=93.93  E-value=0.33  Score=37.37  Aligned_cols=74  Identities=8%  Similarity=0.037  Sum_probs=63.9

Q ss_pred             ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccC-CCHHHHHHHHHHHHHHHHhh
Q 043676          300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC-SDPEIVTVCLIGLENILKVG  373 (446)
Q Consensus       300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~  373 (446)
                      ++..+.+-+.++++.++..|+..|-.++.+++......+....++..|..++.. .++.|+..++..+.......
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f  112 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF  112 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence            566677778889999999999999999999988888888888899999999987 78899999999998876543

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=93.92  E-value=0.64  Score=35.75  Aligned_cols=75  Identities=11%  Similarity=0.046  Sum_probs=63.5

Q ss_pred             ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhccc-CCCHHHHHHHHHHHHHHHHhhh
Q 043676          300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLL-CSDPEIVTVCLIGLENILKVGE  374 (446)
Q Consensus       300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~  374 (446)
                      ++..+.+-+.++++.++..|+..|-.+..++.......+...+++..|..++. ..++.|+..++..+........
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~  117 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR  117 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence            56677788888999999999999999999887777777788889999999886 5678899999999988775443

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=93.85  E-value=8.4  Score=39.07  Aligned_cols=145  Identities=18%  Similarity=0.163  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHH
Q 043676           16 NSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVK   95 (446)
Q Consensus        16 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~   95 (446)
                      +-++-.+.-.|++++-.. ..    +. ...+|.|++-|...+...+|...+-+++.++.+.....    + ..+|.+..
T Consensus       945 ~~vra~~vvTlakmcLah-~~----La-Kr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~----d-~YiP~I~~ 1013 (1529)
T KOG0413|consen  945 DKVRAVGVVTLAKMCLAH-DR----LA-KRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMT----D-RYIPMIAA 1013 (1529)
T ss_pred             hHHHHHHHHHHHHHHhhh-hH----HH-HHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHH----H-HhhHHHHH
Confidence            456667777888877653 11    12 14689999988877657788887778888776332222    2 34899999


Q ss_pred             hhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcC--ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhh
Q 043676           96 LLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQG--ALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPA  173 (446)
Q Consensus        96 ~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~--~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  173 (446)
                      .|.++++-+|.+++-.|.+|....     .+.=.|  .+..++.++  +.+++++..+-.+++.+....  ........+
T Consensus      1014 ~L~Dp~~iVRrqt~ilL~rLLq~~-----~vKw~G~Lf~Rf~l~l~--D~~edIr~~a~f~~~~vL~~~--~P~~f~~~F 1084 (1529)
T KOG0413|consen 1014 SLCDPSVIVRRQTIILLARLLQFG-----IVKWNGELFIRFMLALL--DANEDIRNDAKFYISEVLQSE--EPNFFPLNF 1084 (1529)
T ss_pred             HhcCchHHHHHHHHHHHHHHHhhh-----hhhcchhhHHHHHHHHc--ccCHHHHHHHHHHHHHHHhhc--CccchHHHH
Confidence            999999999999999999998432     111112  133344444  567899999999998887764  223344555


Q ss_pred             HHHHHHh
Q 043676          174 LPALAQL  180 (446)
Q Consensus       174 ~~~l~~l  180 (446)
                      ++.+..+
T Consensus      1085 Ve~i~~l 1091 (1529)
T KOG0413|consen 1085 VEYIIAL 1091 (1529)
T ss_pred             HHHHHHH
Confidence            6655544

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=93.75  E-value=0.39  Score=43.73  Aligned_cols=149  Identities=14%  Similarity=0.121  Sum_probs=87.0

Q ss_pred             HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc------CCCHhHHHHHHHHHH
Q 043676          124 DLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH------SNDEDVLTYACWSLS  197 (446)
Q Consensus       124 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~------~~~~~v~~~~~~~l~  197 (446)
                      ..+.+.+-.+.+-+-+..+...+-++.|+..+..++........   .-+...+..++.      +.++.-+..|+..++
T Consensus       204 ~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~---~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~  280 (370)
T PF08506_consen  204 EELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVT---SILMQYIQQLLQQYASNPSNNWRSKDGALYLIG  280 (370)
T ss_dssp             HHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHH
Confidence            34555566666666664333456677888888889865321111   112223333343      346788888999999


Q ss_pred             HhccCCcH------------HHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHh
Q 043676          198 YLADGTND------------KIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDML  265 (446)
Q Consensus       198 ~l~~~~~~------------~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l  265 (446)
                      .++.....            ....++...++|-|. --.+..+-++..|++.+......-+..  .+  .++++.++..|
T Consensus       281 ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~--~l--~~~~~~l~~~L  355 (370)
T PF08506_consen  281 ALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE--QL--LQIFPLLVNHL  355 (370)
T ss_dssp             HHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH--HH--HHHHHHHHHHT
T ss_pred             HHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH--HH--HHHHHHHHHHh
Confidence            99855421            123355555566555 111244557788998888877644321  22  24789999999


Q ss_pred             ccCchHHHHHHHHHHH
Q 043676          266 VHNHEEIIKKEISWII  281 (446)
Q Consensus       266 ~~~~~~~v~~~a~~~l  281 (446)
                      .++ +.-|+..|+.++
T Consensus       356 ~~~-~~vv~tyAA~~i  370 (370)
T PF08506_consen  356 QSS-SYVVHTYAAIAI  370 (370)
T ss_dssp             TSS--HHHHHHHHHHH
T ss_pred             CCC-CcchhhhhhhhC
Confidence            999 888888888764

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=93.75  E-value=5.1  Score=39.90  Aligned_cols=161  Identities=13%  Similarity=0.095  Sum_probs=89.7

Q ss_pred             hHHHHHHhcc---ccchhHHHHHHHHHHHhhcCC-C---------CCChhhhhhhHHHHHHhhc----CCCHhHHHHHHH
Q 043676          132 LIPLLAELNE---HAKLSMLRNATRTLSNFCRGK-P---------EPPFDQVRPALPALAQLVH----SNDEDVLTYACW  194 (446)
Q Consensus       132 i~~l~~~l~~---~~~~~~~~~a~~~L~~l~~~~-~---------~~~~~~~~~~~~~l~~ll~----~~~~~v~~~~~~  194 (446)
                      +..+..++..   ..++.++..++.+++.+.... .         .........+++.+...+.    ..+.+-+..++.
T Consensus       433 l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk  512 (618)
T PF01347_consen  433 LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLK  512 (618)
T ss_dssp             HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence            3445455521   234567777777776665432 1         1122333445555555554    557788889999


Q ss_pred             HHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC---CccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhcc-Cch
Q 043676          195 SLSYLADGTNDKIQAVIEAGVCPRLVELLGHP---SPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVH-NHE  270 (446)
Q Consensus       195 ~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~  270 (446)
                      +|+|+...           ..++.+..++...   +..+|..|++++..++...+...        .+.++.++.+ ..+
T Consensus       513 aLgN~g~~-----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~  573 (618)
T PF01347_consen  513 ALGNLGHP-----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTED  573 (618)
T ss_dssp             HHHHHT-G-----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-
T ss_pred             HhhccCCc-----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCC
Confidence            99997532           4567777777765   56688899999998877665433        3556777654 336


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-CcchHHHHHH
Q 043676          271 EIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA-EFDTKKEAAW  321 (446)
Q Consensus       271 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~  321 (446)
                      .++|..|...|...   +|..       ..+..+...+..+ +..|......
T Consensus       574 ~EvRiaA~~~lm~~---~P~~-------~~l~~i~~~l~~E~~~QV~sfv~S  615 (618)
T PF01347_consen  574 PEVRIAAYLILMRC---NPSP-------SVLQRIAQSLWNEPSNQVASFVYS  615 (618)
T ss_dssp             HHHHHHHHHHHHHT------H-------HHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred             hhHHHHHHHHHHhc---CCCH-------HHHHHHHHHHhhCchHHHHHHHHH
Confidence            78998888777654   1221       1445555666543 4455544433

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=93.63  E-value=5.9  Score=36.63  Aligned_cols=132  Identities=14%  Similarity=0.152  Sum_probs=93.2

Q ss_pred             HHHhhcCCCChHHHHHHHHHHHHHcCCC---hhhHHHHHhcCChHHHHHhhCC-------CCHHHHHHHHHHHHHhhCCC
Q 043676           50 FVEFLMREDYPQLQYEAAWVLINIASGT---SENTNVVIDHGAVPIFVKLLSS-------PSDDVREQAVWALGNVAGDS  119 (446)
Q Consensus        50 L~~ll~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~~~i~~L~~~L~~-------~~~~v~~~a~~~l~~l~~~~  119 (446)
                      +..+....+ ++-|..|+-...+.+..+   ..++..+.+.-+.+.+-+++.+       ++.-.+..++.+|..+|+..
T Consensus        16 ~~~L~~~k~-D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p   94 (698)
T KOG2611|consen   16 CLKLLKGKR-DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP   94 (698)
T ss_pred             HHHHhcccC-hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence            455555555 677888888888888733   3455667777677888888875       23445667778888888554


Q ss_pred             hH-HHHHHHHcCChHHHHHHhccccchh------HHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCC
Q 043676          120 PR-CRDLVLSQGALIPLLAELNEHAKLS------MLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSN  184 (446)
Q Consensus       120 ~~-~~~~~~~~~~i~~l~~~l~~~~~~~------~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~  184 (446)
                      +- ....+++  .||.++..+.+..+++      +...+..+|..++...+........|.++.+.++-.-.
T Consensus        95 ElAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~  164 (698)
T KOG2611|consen   95 ELASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELP  164 (698)
T ss_pred             hhccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCC
Confidence            32 1223333  5888888886555554      88899999999999877777777789999999876643

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=93.62  E-value=5.8  Score=36.46  Aligned_cols=307  Identities=14%  Similarity=0.117  Sum_probs=158.8

Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCCCCCc-HHHHHhcCCHHHHHHhhc----C------CCChHHHHHHHHHHHHHcCCChh
Q 043676           11 VWSDDNSLQLEATTLSRKLLSFDRNPP-IEKVIQSGVVPRFVEFLM----R------EDYPQLQYEAAWVLINIASGTSE   79 (446)
Q Consensus        11 l~s~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~~~~~~L~~ll~----~------~~~~~~~~~a~~~L~~l~~~~~~   79 (446)
                      |.+++.+-|..|-..|.+......+.+ ...+.+  -++.+++.++    +      +...++..+|+++|+.+.. +++
T Consensus         2 la~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~--k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~-~~~   78 (372)
T PF12231_consen    2 LAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQD--KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLY-HPE   78 (372)
T ss_pred             CCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHc-cHH
Confidence            455667778888888887766542222 333322  2555555443    2      1126888999999999987 555


Q ss_pred             hHHHHHhcC---ChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhc---c-ccchhHHHH
Q 043676           80 NTNVVIDHG---AVPIFVKLLSS--PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELN---E-HAKLSMLRN  150 (446)
Q Consensus        80 ~~~~~~~~~---~i~~L~~~L~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~-~~~~~~~~~  150 (446)
                      ....+-+..   ++...+..+.+  .+..+....+|+|..--...     .++....+..++..+.   + -++..+...
T Consensus        79 i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~-----~~~~~~~~~~l~~~l~~i~~~~~s~si~~e  153 (372)
T PF12231_consen   79 IVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSP-----KIMTSDRVERLLAALHNIKNRFPSKSIISE  153 (372)
T ss_pred             HHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC-----cccchhhHHHHHHHHHHhhccCCchhHHHH
Confidence            544443221   34555555544  34667777777776533221     1222333444444432   2 346678888


Q ss_pred             HHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCc---HHHHH---HHHh----C-----c
Q 043676          151 ATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTN---DKIQA---VIEA----G-----V  215 (446)
Q Consensus       151 a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~---~~~~~---~~~~----~-----~  215 (446)
                      .+.++.++....|..-......-+|.++..+-+....++..+..+...+...-+   .....   ..+.    +     +
T Consensus       154 rL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~  233 (372)
T PF12231_consen  154 RLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLY  233 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHH
Confidence            889999988876555444445577777777777777888777666655542211   11111   1111    1     2


Q ss_pred             HHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc---CCHHHH
Q 043676          216 CPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA---GNREQI  292 (446)
Q Consensus       216 ~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~---~~~~~~  292 (446)
                      .+.+..++.+.+......-+|...-+.-+.+.....-.-...+...-..++++ ++.+|..|..+=..+..   .++...
T Consensus       234 ~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~-d~~~k~~A~~aW~~liy~~~~~~~~~  312 (372)
T PF12231_consen  234 CERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSS-DPQVKIQAFKAWRRLIYASNPNELTS  312 (372)
T ss_pred             HHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhcCCcccc
Confidence            33355555553333333333332222222221111111122444444566777 88888887655554443   222221


Q ss_pred             HHHHHcCChHHHHHHHhcC-Cc----chHHHHHHHHHHhc
Q 043676          293 QAVIDAGLIRPIVNLLQNA-EF----DTKKEAAWAISNAT  327 (446)
Q Consensus       293 ~~~~~~~~i~~L~~ll~~~-~~----~v~~~a~~aL~~l~  327 (446)
                      ...++. +..++...++.. ..    +++..++..++++.
T Consensus       313 ~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll  351 (372)
T PF12231_consen  313 PKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL  351 (372)
T ss_pred             HHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence            222221 223333334332 33    55666666666654

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=93.58  E-value=6.1  Score=36.57  Aligned_cols=129  Identities=13%  Similarity=0.058  Sum_probs=89.5

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhcCCCCC--cHHHHHhcCCHHHHHHhhcCCC----C--hHHHHHHHHHHHHHcCCCh
Q 043676            7 LVAGVWSDDNSLQLEATTLSRKLLSFDRNP--PIEKVIQSGVVPRFVEFLMRED----Y--PQLQYEAAWVLINIASGTS   78 (446)
Q Consensus         7 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~--~~~~~~~~~~~~~L~~ll~~~~----~--~~~~~~a~~~L~~l~~~~~   78 (446)
                      +..+++..+.+.|+.|+....++..++.-.  ..+.+.+.-+.+.+-+++.+.+    .  .-.+..++.+|.-.++ .|
T Consensus        16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~-~p   94 (698)
T KOG2611|consen   16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR-VP   94 (698)
T ss_pred             HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC-Ch
Confidence            455666777788999999999988765222  2455777778888888887633    1  2346666677777777 44


Q ss_pred             hhH--HHHHhcCChHHHHHhhCC-CC------HHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHh
Q 043676           79 ENT--NVVIDHGAVPIFVKLLSS-PS------DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAEL  139 (446)
Q Consensus        79 ~~~--~~~~~~~~i~~L~~~L~~-~~------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l  139 (446)
                      +..  ..++  +.||.++.++.. .+      ..+.+.+-.+|..++...+ ....++..|+++.+.++.
T Consensus        95 ElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~-G~~~Lia~G~~~~~~Q~y  161 (698)
T KOG2611|consen   95 ELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEA-GLMTLIASGGLRVIAQMY  161 (698)
T ss_pred             hhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCc-hhHHHHhcCchHHHHHHH
Confidence            432  2333  458889988875 22      2377888899999986644 456777899999998776

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=93.52  E-value=2.2  Score=42.44  Aligned_cols=315  Identities=15%  Similarity=0.101  Sum_probs=158.5

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHH------Hhc
Q 043676           14 DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVV------IDH   87 (446)
Q Consensus        14 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~------~~~   87 (446)
                      +|..+...+++.++.++..  ......+++.+++..|+..=.-   ...-.-...||+.+.. .......+      +-.
T Consensus       365 ~d~~l~~~~~k~~~~l~~h--~kfa~~fv~~~gi~kll~vpr~---s~~~~g~s~cly~~~~-~q~~mervc~~p~~v~~  438 (1516)
T KOG1832|consen  365 DDSPLLPDVMKLICALAAH--RKFAAMFVERRGILKLLAVPRV---SETFYGLSSCLYTIGS-LQGIMERVCALPLVVIH  438 (1516)
T ss_pred             ccccccHHHHHHHHHHHHh--hHHHHHHHHhhhhHHHhcCCCc---hhhhhhHHHHHHHHhh-hhhHHHHHhhccHHHHH
Confidence            4556677788888887776  5677888888888877665322   2223333456666665 22222211      122


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcc-------c-----------cchhHHH
Q 043676           88 GAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE-------H-----------AKLSMLR  149 (446)
Q Consensus        88 ~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-------~-----------~~~~~~~  149 (446)
                      .++..-+.+|......-+.++...+.... .-...-+.+-....+..|+.++..       +           .+.++-.
T Consensus       439 ~vv~~~~~l~~cs~~~~~~~~~~ff~~~f-~frail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~  517 (1516)
T KOG1832|consen  439 QVVKLAIELLDCSQDQARKNSALFFAAAF-VFRAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAF  517 (1516)
T ss_pred             HHHHHHHHHHhcchhhccchHHHHHHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhh
Confidence            44555666666544433333333222111 101112223334456666666521       1           1223444


Q ss_pred             HHHHHHHHhhcCC-----CC-CChhhhhhhHHHHHHhhcCC------CHhHHHHHHHHHHHhccCC-------cHHHHHH
Q 043676          150 NATRTLSNFCRGK-----PE-PPFDQVRPALPALAQLVHSN------DEDVLTYACWSLSYLADGT-------NDKIQAV  210 (446)
Q Consensus       150 ~a~~~L~~l~~~~-----~~-~~~~~~~~~~~~l~~ll~~~------~~~v~~~~~~~l~~l~~~~-------~~~~~~~  210 (446)
                      ..|.+|.......     .. +......+..+..+.-+...      ..+..+.+++-+..+....       -.....+
T Consensus       518 htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenf  597 (1516)
T KOG1832|consen  518 HTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENF  597 (1516)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHH
Confidence            5555555433221     00 00001111122222222211      1223333444433333222       2334456


Q ss_pred             HHhCcHHHHHHhcCC-CCc-------cchhHHHHHHHHhhcCCchhhHHHHhc--------CChHHHHHHhcc---CchH
Q 043676          211 IEAGVCPRLVELLGH-PSP-------SVLTPALRTVGNIVTGDDFQTQCIINH--------GAVPYLLDMLVH---NHEE  271 (446)
Q Consensus       211 ~~~~~~~~l~~ll~~-~~~-------~~~~~a~~~l~~l~~~~~~~~~~~~~~--------~~~~~l~~~l~~---~~~~  271 (446)
                      .+.+.+..++.+... +++       +....|+.+|..+..- |.....+.+.        .++..++.....   ..++
T Consensus       598 lkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dp  676 (1516)
T KOG1832|consen  598 LKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDP  676 (1516)
T ss_pred             HHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceEEEeecccccccccCH
Confidence            777888888887665 232       2344566666655553 3333334321        133333333221   1167


Q ss_pred             HHHHHHHHHHHHHhcCCHHHH-----------------------------------HHHHHcCChHHHHHHHhcCCc---
Q 043676          272 IIKKEISWIISNITAGNREQI-----------------------------------QAVIDAGLIRPIVNLLQNAEF---  313 (446)
Q Consensus       272 ~v~~~a~~~l~~l~~~~~~~~-----------------------------------~~~~~~~~i~~L~~ll~~~~~---  313 (446)
                      +++..|+.+|.|+....|..+                                   ..+..+++|..|+++++...|   
T Consensus       677 ei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~  756 (1516)
T KOG1832|consen  677 EIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTT  756 (1516)
T ss_pred             HHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCc
Confidence            899999999999876432111                                   122346789999999997654   


Q ss_pred             --chHHHHHHHHHHhccCCCHHHHHHH
Q 043676          314 --DTKKEAAWAISNATSGGTQEQIKHL  338 (446)
Q Consensus       314 --~v~~~a~~aL~~l~~~~~~~~~~~l  338 (446)
                        .+|.-|+.+|.-++..  +..++.+
T Consensus       757 aD~IRalAc~~L~GLaR~--~tVrQIl  781 (1516)
T KOG1832|consen  757 ADCIRALACRVLLGLARD--DTVRQIL  781 (1516)
T ss_pred             HHHHHHHHHHHHhccccC--cHHHHHH
Confidence              5889999999999885  3444443

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.49  E-value=0.72  Score=39.74  Aligned_cols=146  Identities=16%  Similarity=0.176  Sum_probs=100.8

Q ss_pred             hhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhH
Q 043676          171 RPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQ  250 (446)
Q Consensus       171 ~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~  250 (446)
                      ...+...+..|.+.++......+..|..++...++.....+. .++-.+++-+++....+-..|+.+++.+.........
T Consensus        87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~  165 (334)
T KOG2933|consen   87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID  165 (334)
T ss_pred             HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556667778889999999999999988765544444443 5666777778888888999999999999865444333


Q ss_pred             HHHhcCChHHHHHHh-ccC--chHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhc
Q 043676          251 CIINHGAVPYLLDML-VHN--HEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNAT  327 (446)
Q Consensus       251 ~~~~~~~~~~l~~~l-~~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  327 (446)
                      .     -++.++..| ...  .+.-+++.|-.+|..+..+-...       .+++.|+..+++.++.++..++.+..++.
T Consensus       166 ~-----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v  233 (334)
T KOG2933|consen  166 Q-----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCV  233 (334)
T ss_pred             H-----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccc
Confidence            2     233333333 222  14568888989998887642221       36778888899889999988887777665


Q ss_pred             cC
Q 043676          328 SG  329 (446)
Q Consensus       328 ~~  329 (446)
                      ..
T Consensus       234 ~r  235 (334)
T KOG2933|consen  234 IR  235 (334)
T ss_pred             ee
Confidence            43

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=93.45  E-value=16  Score=40.88  Aligned_cols=265  Identities=11%  Similarity=0.025  Sum_probs=140.6

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCC--CCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCCh
Q 043676           13 SDDNSLQLEATTLSRKLLSFDR--NPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAV   90 (446)
Q Consensus        13 s~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i   90 (446)
                      +.+..+...|+..|+.++..--  .+....-.+..++..+..++.+....+++...+.|+.++.....   . -+.. +.
T Consensus      1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~---~-nIkS-GW 1222 (1780)
T PLN03076       1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV---N-NVKS-GW 1222 (1780)
T ss_pred             CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH---h-hhhc-Cc
Confidence            4567788899998888765320  11111123446788888877766558999999999999886221   2 2233 46


Q ss_pred             HHHHHhhC----CCCHHHHHHHHHHHHHhhCCChH-H----HHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhh--
Q 043676           91 PIFVKLLS----SPSDDVREQAVWALGNVAGDSPR-C----RDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFC--  159 (446)
Q Consensus        91 ~~L~~~L~----~~~~~v~~~a~~~l~~l~~~~~~-~----~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~--  159 (446)
                      +.+..++.    +.++.+...|..++..++.+.-. .    ...+.  .++..+........+.++--.++..|++++  
T Consensus      1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~--DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076       1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT--DCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred             HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH--HHHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence            77777665    46688888888888877643111 0    01111  134444444433334444445555555431  


Q ss_pred             --cCCC-----------------------CC------ChhhhhhhHHHHHH---hhcCCCHhHHHHHHHHHHHhccC---
Q 043676          160 --RGKP-----------------------EP------PFDQVRPALPALAQ---LVHSNDEDVLTYACWSLSYLADG---  202 (446)
Q Consensus       160 --~~~~-----------------------~~------~~~~~~~~~~~l~~---ll~~~~~~v~~~~~~~l~~l~~~---  202 (446)
                        ....                       ..      ........+|.|..   +..+...+||..|+.+|..+...   
T Consensus      1301 La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076       1301 LAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred             HHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence              1100                       00      00011234444443   34567899999999999877633   


Q ss_pred             --CcHHHHHHHHhCcHHHHHHhcCCC----------------C---cc----chhHHHHHHHHhhcCCchhhHHH--Hhc
Q 043676          203 --TNDKIQAVIEAGVCPRLVELLGHP----------------S---PS----VLTPALRTVGNIVTGDDFQTQCI--INH  255 (446)
Q Consensus       203 --~~~~~~~~~~~~~~~~l~~ll~~~----------------~---~~----~~~~a~~~l~~l~~~~~~~~~~~--~~~  255 (446)
                        +++....++. +++-+++..++..                +   .+    ....+..++..++.--......+  +-.
T Consensus      1381 ~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~ 1459 (1780)
T PLN03076       1381 LFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLK 1459 (1780)
T ss_pred             cCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              2223333333 4555555444321                0   00    12223333333332111111111  112


Q ss_pred             CChHHHHHHhccCchHHHHHHHHHHHHHHhc
Q 043676          256 GAVPYLLDMLVHNHEEIIKKEISWIISNITA  286 (446)
Q Consensus       256 ~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~  286 (446)
                      +++..+...+..+ +..+-..+..+|.++..
T Consensus      1460 ~~l~ll~~ci~q~-n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076       1460 KVLMLLVSFIKRP-HQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred             HHHHHHHHHHcCc-hHHHHHHHHHHHHHHHH
Confidence            3455555556666 77777788888888875

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=93.30  E-value=6.6  Score=36.12  Aligned_cols=266  Identities=13%  Similarity=0.039  Sum_probs=135.3

Q ss_pred             CHHHHHHHHHHHHHhhCCChHHHHHHHHcC---ChHHHHHHhc-cccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHH
Q 043676          101 SDDVREQAVWALGNVAGDSPRCRDLVLSQG---ALIPLLAELN-EHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPA  176 (446)
Q Consensus       101 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~---~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~  176 (446)
                      +..+..+|+.+++.+.... .....+....   .+...+..+. ...+..+....+|+|+.=--....-.......++..
T Consensus        59 ~~~L~~qALkll~~~l~~~-~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~  137 (372)
T PF12231_consen   59 DSRLVIQALKLLGFFLYHP-EIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA  137 (372)
T ss_pred             chHHHHHHHHHHHHHHccH-HHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence            6788899999999888433 2222221111   2344444552 233456667777766642222111111122223333


Q ss_pred             HHHhhc-CCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCc---hhhH--
Q 043676          177 LAQLVH-SNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDD---FQTQ--  250 (446)
Q Consensus       177 l~~ll~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~---~~~~--  250 (446)
                      +..+-+ -++..+....+.++.++....+.....-.. ..++.++..+-+....++..|..+...+...-+   ....  
T Consensus       138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~-~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~  216 (372)
T PF12231_consen  138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHAD-IWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSV  216 (372)
T ss_pred             HHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHH
Confidence            333332 456788889999999999877654432221 478888888888778888776665555532111   1111  


Q ss_pred             -HHHhcC---------ChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHH-HHHHHHHcCChHHHHHHHhcCCcchHHHH
Q 043676          251 -CIINHG---------AVPYLLDMLVHNHEEIIKKEISWIISNITAGNRE-QIQAVIDAGLIRPIVNLLQNAEFDTKKEA  319 (446)
Q Consensus       251 -~~~~~~---------~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a  319 (446)
                       ...+..         +.+.+..++.+. +......-+|...-+..+++. ...... +..+...-..++++++.+|..|
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~L~~mi~~~-~~~~~a~~iW~~~i~LL~~~~~~~w~~~-n~wL~v~e~cFn~~d~~~k~~A  294 (372)
T PF12231_consen  217 LEDLQRSLENGKLIQLYCERLKEMIKSK-DEYKLAMQIWSVVILLLGSSRLDSWEHL-NEWLKVPEKCFNSSDPQVKIQA  294 (372)
T ss_pred             HHHhccccccccHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHhCCchhhccHhH-hHHHHHHHHHhcCCCHHHHHHH
Confidence             111111         233356666663 222222333433333233221 001111 1244445556677899999999


Q ss_pred             HHHHHHhccCC--CHHHHHHHHHcCChHHHHhcccC-CCH----HHHHHHHHHHHHHHH
Q 043676          320 AWAISNATSGG--TQEQIKHLVREGCVKPLCDLLLC-SDP----EIVTVCLIGLENILK  371 (446)
Q Consensus       320 ~~aL~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~~-~~~----~~~~~~~~~l~~l~~  371 (446)
                      ..+-..+....  ++........- ...++...++. ..+    ++...++..+.+++.
T Consensus       295 ~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly  352 (372)
T PF12231_consen  295 FKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY  352 (372)
T ss_pred             HHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence            99888775421  11111111111 22333333432 223    677777777777764

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.30  E-value=4.1  Score=40.27  Aligned_cols=163  Identities=9%  Similarity=0.054  Sum_probs=83.3

Q ss_pred             CChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHh-C-------cHHHHHHhcCCCCccchhHHHH
Q 043676          165 PPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEA-G-------VCPRLVELLGHPSPSVLTPALR  236 (446)
Q Consensus       165 ~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~-~-------~~~~l~~ll~~~~~~~~~~a~~  236 (446)
                      .........+|.++..|+.+..-+..+|+.++-.+.......-..+... .       .+..+++.++.+...--+....
T Consensus       491 l~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmK  570 (960)
T KOG1992|consen  491 LGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMK  570 (960)
T ss_pred             CChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHH
Confidence            3444557789999999999999999999999987764333211111111 1       2222333344444443444555


Q ss_pred             HHHHhhcCCchhhHHHH---hcCChHHHHHHhccCchHHHHHH---HHHHHHH-HhcCCHHHHHHHHHcCChHHHHHHHh
Q 043676          237 TVGNIVTGDDFQTQCII---NHGAVPYLLDMLVHNHEEIIKKE---ISWIISN-ITAGNREQIQAVIDAGLIRPIVNLLQ  309 (446)
Q Consensus       237 ~l~~l~~~~~~~~~~~~---~~~~~~~l~~~l~~~~~~~v~~~---a~~~l~~-l~~~~~~~~~~~~~~~~i~~L~~ll~  309 (446)
                      ++..+..-.+.......   -.++.+.+...-+++.++..-..   +..++-+ .+..++.....+. ...+|.+...+.
T Consensus       571 aImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e-~aL~p~fq~Il~  649 (960)
T KOG1992|consen  571 AIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLE-EALFPVFQTILS  649 (960)
T ss_pred             HHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHH-HHHHHHHHHHHH
Confidence            55555443333221111   11223333344455544443333   3333333 3334444433333 357777777776


Q ss_pred             cCCcchHHHHHHHHHHhcc
Q 043676          310 NAEFDTKKEAAWAISNATS  328 (446)
Q Consensus       310 ~~~~~v~~~a~~aL~~l~~  328 (446)
                      .+-.+..-.+...++-+..
T Consensus       650 eDI~EfiPYvfQlla~lve  668 (960)
T KOG1992|consen  650 EDIQEFIPYVFQLLAVLVE  668 (960)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            6555555566666665544

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=93.24  E-value=0.49  Score=36.39  Aligned_cols=75  Identities=17%  Similarity=0.305  Sum_probs=61.0

Q ss_pred             ChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhc-CCCHHHHHHHHHHH
Q 043676          343 CVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQS-HDNNEIHEKSVKIF  421 (446)
Q Consensus       343 ~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~-~~~~~v~~~a~~~l  421 (446)
                      ++..|..-+.++++.++..|+..|..+++.+...            |...+...++++.+..+.. ..++.|++++..++
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~------------fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li  109 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTH------------FHDEVASREFMDELKDLIKTTKNEEVRQKILELI  109 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHH------------HHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence            4555666677789999999999999999987554            6788888889999988875 67789999999999


Q ss_pred             HHhcCCCC
Q 043676          422 KTYWCGRN  429 (446)
Q Consensus       422 ~~~~~~~~  429 (446)
                      ..+...-.
T Consensus       110 ~~W~~~f~  117 (142)
T cd03569         110 QAWALAFR  117 (142)
T ss_pred             HHHHHHhC
Confidence            98865443

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.20  E-value=3.3  Score=43.41  Aligned_cols=241  Identities=16%  Similarity=0.112  Sum_probs=122.3

Q ss_pred             CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhc---c---ccchhHHHHHHHHHHHhhcCC-CCCChhhhhh
Q 043676          100 PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELN---E---HAKLSMLRNATRTLSNFCRGK-PEPPFDQVRP  172 (446)
Q Consensus       100 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~---~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~  172 (446)
                      +..+++...+.++.++.....+   .... | .+.+.+++.   .   .....+.+.+..+|.-++.+. +.-......+
T Consensus       854 ~~~evr~~sl~~l~silet~ge---~ll~-~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~  928 (1610)
T KOG1848|consen  854 RGVEVRISSLEALVSILETVGE---HLLH-G-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILD  928 (1610)
T ss_pred             ccceeeHHHHHHHHHHHhccch---hhcc-c-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHH
Confidence            5567787888888888744322   1111 1 333444332   1   124567888888888888877 6666666778


Q ss_pred             hHHHHHHhhcC-CCHhHHHHHHHHHHHhccCCcHHHHHHHH----hCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCch
Q 043676          173 ALPALAQLVHS-NDEDVLTYACWSLSYLADGTNDKIQAVIE----AGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDF  247 (446)
Q Consensus       173 ~~~~l~~ll~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~~----~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~  247 (446)
                      ++..+..+-+. .|..+--.++..++.++..-....+..-+    ...++.+..  ..+...+..+++|++         
T Consensus       929 lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~s--s~~~~~~l~e~lwi~---------  997 (1610)
T KOG1848|consen  929 LIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYS--SMKSKEILPEVLWIM---------  997 (1610)
T ss_pred             HHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcc--cccchhhhhhHHHHH---------
Confidence            88888777663 47777777777777766321111111111    112222221  112222333343332         


Q ss_pred             hhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhc----------------
Q 043676          248 QTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA-GNREQIQAVIDAGLIRPIVNLLQN----------------  310 (446)
Q Consensus       248 ~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~~~i~~L~~ll~~----------------  310 (446)
                               ++..+.++-.++ ..+||..|+.++-.+.. ++........+.-+...++.+|++                
T Consensus       998 ---------ll~~L~~~~~ds-r~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqk 1067 (1610)
T KOG1848|consen  998 ---------LLVHLADLCEDS-RAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQK 1067 (1610)
T ss_pred             ---------HHHHHHHHhccc-hHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhh
Confidence                     122233333444 56666666666666543 211111112222233444444541                


Q ss_pred             CCcchHHHHHHHHHHhccCCCHHHHHHHHHc-CC---hHHHH----hcccCCCHHHHHHHHHHHHHHH
Q 043676          311 AEFDTKKEAAWAISNATSGGTQEQIKHLVRE-GC---VKPLC----DLLLCSDPEIVTVCLIGLENIL  370 (446)
Q Consensus       311 ~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~-~~---i~~L~----~ll~~~~~~~~~~~~~~l~~l~  370 (446)
                      ...+.....+.++..+.    +++.+-+... |+   .+.+.    .+..+.++++...++.++..+.
T Consensus      1068 qwtet~~ltisgIaklf----~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1068 QWTETSCLTISGIAKLF----SENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred             hhhhhhhhhHHHHHHHH----HHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence            12233344455555554    3444444432 22   33333    3345678888888888887764

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=93.07  E-value=0.43  Score=38.95  Aligned_cols=109  Identities=10%  Similarity=0.142  Sum_probs=73.1

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHHc-CCChhhHHHHHhcCChHHHHHhhCC---------CCHHHHHHHHHHHHHhh
Q 043676           47 VPRFVEFLMREDYPQLQYEAAWVLINIA-SGTSENTNVVIDHGAVPIFVKLLSS---------PSDDVREQAVWALGNVA  116 (446)
Q Consensus        47 ~~~L~~ll~~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~~i~~L~~~L~~---------~~~~v~~~a~~~l~~l~  116 (446)
                      ...+++.+.+.. ...  ..+..|.... .........|++.||+..|+.+|..         .+......++.++..+.
T Consensus        68 p~~~i~~L~~~~-~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~  144 (187)
T PF06371_consen   68 PEWYIKKLKSRP-STS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM  144 (187)
T ss_dssp             HHHHHHHHTTT---HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHccC-ccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence            445666676655 222  3333333322 2345678888899999999998863         34578888999999998


Q ss_pred             CCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 043676          117 GDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFC  159 (446)
Q Consensus       117 ~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  159 (446)
                      .........+...+.+..++..+ .+++..++..++..|..+|
T Consensus       145 n~~~G~~~v~~~~~~v~~i~~~L-~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  145 NTKYGLEAVLSHPDSVNLIALSL-DSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             SSHHHHHHHHCSSSHHHHHHHT---TTSHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHcCcHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence            55554444555567788888888 7888999999999998876

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=92.80  E-value=2.8  Score=31.08  Aligned_cols=103  Identities=13%  Similarity=0.167  Sum_probs=64.6

Q ss_pred             HhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccc
Q 043676          308 LQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVN  387 (446)
Q Consensus       308 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  387 (446)
                      ..+.+...-.....-|.+++.. ++.....     +.+.|.+=|++.++.|+.+++.+|..++..+...           
T Consensus        10 Tsdd~~p~pgy~~~Eia~~t~~-s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~-----------   72 (122)
T cd03572          10 TSDDDEPTPGYLYEEIAKLTRK-SVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD-----------   72 (122)
T ss_pred             hcCCCCCCchHHHHHHHHHHHc-CHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH-----------
Confidence            3333333333444455555544 3333333     4677888888888999999999999999887644           


Q ss_pred             hHHHHHH-HhChHHHHHHhhcC--------CCHHHHHHHHHHHHHhcCCC
Q 043676          388 QYAQFVE-EAGGLEKIENLQSH--------DNNEIHEKSVKIFKTYWCGR  428 (446)
Q Consensus       388 ~~~~~l~-~~~~~~~l~~l~~~--------~~~~v~~~a~~~l~~~~~~~  428 (446)
                       |...++ .+..+..+.+....        .+..|+..|.+++.-+|..+
T Consensus        73 -f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~~~  121 (122)
T cd03572          73 -FKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFSYS  121 (122)
T ss_pred             -HHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhccC
Confidence             333333 33344445555442        24578999999999888765

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=92.77  E-value=1.7  Score=34.50  Aligned_cols=113  Identities=23%  Similarity=0.181  Sum_probs=73.7

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcC--ChHHHHHHhccccchhHHHHHHHHHHHhhcCC---C
Q 043676           89 AVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQG--ALIPLLAELNEHAKLSMLRNATRTLSNFCRGK---P  163 (446)
Q Consensus        89 ~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~--~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~---~  163 (446)
                      .+..+..+|+++++.-|-.++..+.-.+..++.  +.+.+.+  .+..++..+.+.....+.+.++.++..+....   +
T Consensus        26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p  103 (165)
T PF08167_consen   26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP  103 (165)
T ss_pred             HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            456778889998888888888888888865421  2332322  47788888877677888999999998887654   2


Q ss_pred             CCChh----hhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcH
Q 043676          164 EPPFD----QVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTND  205 (446)
Q Consensus       164 ~~~~~----~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~  205 (446)
                      .-...    ....+++.++.+++.  ......++.++..+....+.
T Consensus       104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt  147 (165)
T PF08167_consen  104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT  147 (165)
T ss_pred             chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence            21111    124445555555554  56666777777777655443

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.76  E-value=11  Score=37.33  Aligned_cols=308  Identities=10%  Similarity=0.049  Sum_probs=159.4

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHH--hcCChHHH
Q 043676           16 NSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVI--DHGAVPIF   93 (446)
Q Consensus        16 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~~L   93 (446)
                      .-+++..++.+....+.......    ..-+-..+++++++.++--++..+++++.-+..+-.-..+.+.  -......+
T Consensus       501 RiiRRRVa~ilg~Wvsvq~~~e~----k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~l  576 (978)
T KOG1993|consen  501 RIIRRRVAWILGQWVSVQQKLEL----KPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLL  576 (978)
T ss_pred             hHHHHHHHHHHhhhhheechHhH----HHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHH
Confidence            45677777888777664211111    1123455677888875467888888888888763222222221  12344555


Q ss_pred             HHhhCC-CCHHHHHHHHHHHHHhhCCChHHH-HHHHHcCChHHHHHHhccc-cchhHHHHHHHHHHHhhcCCCCCChhhh
Q 043676           94 VKLLSS-PSDDVREQAVWALGNVAGDSPRCR-DLVLSQGALIPLLAELNEH-AKLSMLRNATRTLSNFCRGKPEPPFDQV  170 (446)
Q Consensus        94 ~~~L~~-~~~~v~~~a~~~l~~l~~~~~~~~-~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~  170 (446)
                      .+++.. ..-+.|...+.+++.+.....+.. ....  .++..+-.+-..+ ..+-++...+.+|.++...-........
T Consensus       577 fkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~--~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~  654 (978)
T KOG1993|consen  577 FKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYAS--TIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFY  654 (978)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHH--HHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccch
Confidence            566655 456677778888877774322211 1111  1222222222222 3445666777888888776533333333


Q ss_pred             hhhHHHHHHhhcCCC---HhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCch
Q 043676          171 RPALPALAQLVHSND---EDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDF  247 (446)
Q Consensus       171 ~~~~~~l~~ll~~~~---~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~  247 (446)
                      .-.+|.+-....-++   .-+.+.+...-.....+.+.....+.  +++|.+...+....+.. ..++.++....--...
T Consensus       655 ~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll--~L~p~l~~~iE~ste~L-~t~l~Ii~sYilLd~~  731 (978)
T KOG1993|consen  655 PFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELL--LLFPHLLYIIEQSTENL-PTVLMIISSYILLDNT  731 (978)
T ss_pred             HHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHH--HHHHHHHHHHHhhhhhH-HHHHHHHHHHHhhccH
Confidence            334444433332222   22334444333333333332222222  56677777765544332 2334444333221111


Q ss_pred             hhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh--cCCcchHHHHHHHHHH
Q 043676          248 QTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQ--NAEFDTKKEAAWAISN  325 (446)
Q Consensus       248 ~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~aL~~  325 (446)
                      ....-...|+...+..++.+- ..+-....+.++..+...++ ........++++.+..-+-  .+.|.+...-+..++.
T Consensus       732 ~fl~~y~~~i~k~~~~~l~dv-r~egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaR  809 (978)
T KOG1993|consen  732 VFLNDYAFGIFKKLNDLLDDV-RNEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVAR  809 (978)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHH
Confidence            111222346677777777655 44445556666666655544 4455566688888776553  3466777777778877


Q ss_pred             hccCCCHHHH
Q 043676          326 ATSGGTQEQI  335 (446)
Q Consensus       326 l~~~~~~~~~  335 (446)
                      ++-. +++..
T Consensus       810 i~l~-n~~~~  818 (978)
T KOG1993|consen  810 ISLR-NPSLF  818 (978)
T ss_pred             HHhc-ChHHH
Confidence            7665 34433

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=92.52  E-value=0.98  Score=34.50  Aligned_cols=74  Identities=15%  Similarity=0.148  Sum_probs=60.2

Q ss_pred             ChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcC------CCHHHHHH
Q 043676          343 CVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSH------DNNEIHEK  416 (446)
Q Consensus       343 ~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~------~~~~v~~~  416 (446)
                      ++..+..-+.++++.++..|+..|..+++.+...            |...+...+++..+.++...      .++.|+++
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~------------fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~k  106 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGER------------FHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTK  106 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHH------------HHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHH
Confidence            4555667778899999999999999999987765            67888888888888888753      57899999


Q ss_pred             HHHHHHHhcCCC
Q 043676          417 SVKIFKTYWCGR  428 (446)
Q Consensus       417 a~~~l~~~~~~~  428 (446)
                      ...++..+-..-
T Consensus       107 il~li~~W~~~f  118 (139)
T cd03567         107 IIELLYSWTLEL  118 (139)
T ss_pred             HHHHHHHHHHHh
Confidence            999999885543

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=92.41  E-value=3.6  Score=31.30  Aligned_cols=74  Identities=12%  Similarity=0.186  Sum_probs=59.4

Q ss_pred             ChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcC---CCHHHHHHHHH
Q 043676          343 CVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSH---DNNEIHEKSVK  419 (446)
Q Consensus       343 ~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~---~~~~v~~~a~~  419 (446)
                      ++..|..-+.++++.++..|+..|..++..++..            |...+....++..+..+...   .++.|++++..
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~------------f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~  105 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKP------------FHLQVADKEFLLELVKIAKNSPKYDPKVREKALE  105 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChH------------HHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence            4566777778889999999999999999987764            57777777778888888764   57899999999


Q ss_pred             HHHHhcCCC
Q 043676          420 IFKTYWCGR  428 (446)
Q Consensus       420 ~l~~~~~~~  428 (446)
                      ++..+...-
T Consensus       106 ll~~W~~~f  114 (133)
T cd03561         106 LILAWSESF  114 (133)
T ss_pred             HHHHHHHHh
Confidence            999875433

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=92.37  E-value=1.3  Score=33.74  Aligned_cols=76  Identities=9%  Similarity=-0.038  Sum_probs=63.2

Q ss_pred             ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccC---CCHHHHHHHHHHHHHHHHhhhh
Q 043676          300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC---SDPEIVTVCLIGLENILKVGEA  375 (446)
Q Consensus       300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~---~~~~~~~~~~~~l~~l~~~~~~  375 (446)
                      ++..|.+-++++++.++..|+..|-.+..++.......+....++..|..++..   .++.++..++..+........+
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~  116 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG  116 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            566777888899999999999999999999888777777776788889998865   4788999999999887765444

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=92.24  E-value=12  Score=36.36  Aligned_cols=285  Identities=13%  Similarity=0.135  Sum_probs=140.2

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676            3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN   82 (446)
Q Consensus         3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~   82 (446)
                      ++..+=+.+.++++.++--|+-.+.-..++.+++.      .-++..|...+++++ ..++..|+..|+-.-.++  .++
T Consensus       416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne~------dpalALLsdyv~~~~-s~~ri~aIlGLglayaGs--q~e  486 (878)
T KOG2005|consen  416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFNEC------DPALALLSDYLQSSS-SIHRIGAILGLGLAYAGS--QRE  486 (878)
T ss_pred             hHHHHHHHhhcCCchhhhccceeeeeecccccccc------CHHHHHHHHhccCCC-ceeehHHhhhhHHhhcCC--chH
Confidence            34556666777776666666554443233321111      124556667778887 688888888777655522  233


Q ss_pred             HHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCC--hHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHh
Q 043676           83 VVIDHGAVPIFVKLLSSP--SDDVREQAVWALGNVAGDS--PRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNF  158 (446)
Q Consensus        83 ~~~~~~~i~~L~~~L~~~--~~~v~~~a~~~l~~l~~~~--~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l  158 (446)
                      .+     ...|..++.+.  ..++...|...++.+.-++  .+....     ++..++..=......+..+-....|.-+
T Consensus       487 ~V-----~~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvts~-----ilqtlmekse~El~d~~~RFL~LGL~ll  556 (878)
T KOG2005|consen  487 EV-----LELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTSS-----ILQTLMEKSETELEDQWFRFLALGLALL  556 (878)
T ss_pred             HH-----HHHHhHHhcCCCCchhHHHHHHhhcceeEEecCChHHHHH-----HHHHHHHhhhhhhhchHHHHHHHHHHHH
Confidence            22     22566667663  3567777777777776333  222211     2233332221111222223333333333


Q ss_pred             hcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCc---cchhHHH
Q 043676          159 CRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSP---SVLTPAL  235 (446)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~---~~~~~a~  235 (446)
                      .....        ..+...+.-+..-...++..+-..+...+.........+.+    ..+..+....+.   .....|+
T Consensus       557 flgkq--------e~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~----q~ll~~cgE~~~~~e~~~~~av  624 (878)
T KOG2005|consen  557 FLGKQ--------ESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQS----QLLLSFCGEHDADLESEQELAV  624 (878)
T ss_pred             Hhccc--------chHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEech----hhhhhhcCCCccchhhhccchh
Confidence            32221        12222223333223333333333332222221111111100    112222222111   1122344


Q ss_pred             HHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcch
Q 043676          236 RTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDT  315 (446)
Q Consensus       236 ~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v  315 (446)
                      --++-++-+.+-..+.     .+..+-.++..+ ++.+|...=.+++-++..+|..       +++..|-++..+.+.++
T Consensus       625 LgiAliAMgeeig~eM-----~lR~f~h~l~yg-e~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~D~ev  691 (878)
T KOG2005|consen  625 LGIALIAMGEEIGSEM-----VLRHFGHLLHYG-EPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDGDLEV  691 (878)
T ss_pred             hhhhhhhhhhhhhhHH-----HHHHHHHHHHcC-CHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCcchHH
Confidence            4444444443332222     345566677777 7888888878888776666653       47778888888888888


Q ss_pred             HHHHHHHHHHhccCCC
Q 043676          316 KKEAAWAISNATSGGT  331 (446)
Q Consensus       316 ~~~a~~aL~~l~~~~~  331 (446)
                      ..+++.+++-+-.+.+
T Consensus       692 a~naIfamGLiGAGTn  707 (878)
T KOG2005|consen  692 AMNAIFAMGLIGAGTN  707 (878)
T ss_pred             HHHHHHHhccccCCcc
Confidence            8888888887765533

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=91.87  E-value=2  Score=35.19  Aligned_cols=98  Identities=15%  Similarity=0.074  Sum_probs=72.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-----CCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcc
Q 043676          277 ISWIISNITAGNREQIQAVIDAGLIRPIVNLLQN-----AEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLL  351 (446)
Q Consensus       277 a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll  351 (446)
                      |...|..+ ...|+....+.+..+--.+...+..     +...+|..++.+++.+.+++++...+++....++|...+++
T Consensus       120 aL~lLQcl-aShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIm  198 (315)
T COG5209         120 ALNLLQCL-ASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIM  198 (315)
T ss_pred             HHHHHHHH-hcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHH
Confidence            34444444 4456777777776653334444432     23578899999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHHHhhhh
Q 043676          352 LCSDPEIVTVCLIGLENILKVGEA  375 (446)
Q Consensus       352 ~~~~~~~~~~~~~~l~~l~~~~~~  375 (446)
                      +.+++--+..++.++..++-.+..
T Consensus       199 e~gSElSktvaifI~qkil~dDvG  222 (315)
T COG5209         199 ELGSELSKTVAIFIFQKILGDDVG  222 (315)
T ss_pred             HhhhHHHHHHHHHHHHHHhccchh
Confidence            999888888888888887765444

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=91.59  E-value=3.5  Score=46.56  Aligned_cols=267  Identities=14%  Similarity=0.168  Sum_probs=141.9

Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCCCC-----CcHHHHHhcCCHHHHHHhh-cCCCChHHHHHHHHHHHHHcCCChhhHHHH
Q 043676           11 VWSDDNSLQLEATTLSRKLLSFDRN-----PPIEKVIQSGVVPRFVEFL-MREDYPQLQYEAAWVLINIASGTSENTNVV   84 (446)
Q Consensus        11 l~s~~~~~~~~a~~~l~~l~~~~~~-----~~~~~~~~~~~~~~L~~ll-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~   84 (446)
                      +..+|++.+..+...+..+......     +..-..+ ...+..+..+- ..++ +.++......+.      .......
T Consensus       490 ~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v-~~vl~~ll~~aia~~~-~~i~~~v~~~l~------~~~~~~l  561 (2341)
T KOG0891|consen  490 LEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVV-KEVLSALLTVAIADTD-PDIRIRVLSSLN------ERFDAQL  561 (2341)
T ss_pred             HhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHH-HHHHHHHHHHhccCCC-cchhhhHHhhhc------cchhhhh
Confidence            4456777777776666655443211     0000001 11222222222 2333 555554444433      2222234


Q ss_pred             HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC
Q 043676           85 IDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPE  164 (446)
Q Consensus        85 ~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~  164 (446)
                      .+.+.+..+...+.++.-.+++.+...+++++..+|...-..+....+...-.+. .+....+...+..-+..+....+.
T Consensus       562 aQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~-~sg~~r~~~~~a~~~~~~i~~~~~  640 (2341)
T KOG0891|consen  562 AQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELE-FSGMARTKEESAKLLCELIISSPV  640 (2341)
T ss_pred             cCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhh-hcchHHhHHHHHHHhhHHHHHHHH
Confidence            4455666677777778888999999999999987774322221111111111111 111111111221111111111111


Q ss_pred             CChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCccchhHHHHHHHHhhc
Q 043676          165 PPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLTPALRTVGNIVT  243 (446)
Q Consensus       165 ~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~~a~~~l~~l~~  243 (446)
                      .........+..+...+.+.+..+...+..+++.|+...........+ ..++.+.+.+.. .+..-+..++++++++.+
T Consensus       641 ~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s  719 (2341)
T KOG0891|consen  641 LISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLES  719 (2341)
T ss_pred             HHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhc
Confidence            112223445567777778888888899999999999766644444444 555666665555 344456788999999987


Q ss_pred             CCchhhHHHH-hcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC
Q 043676          244 GDDFQTQCII-NHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG  287 (446)
Q Consensus       244 ~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~  287 (446)
                      .......... ...++..+...+.......++.++...++++...
T Consensus       720 ~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~  764 (2341)
T KOG0891|consen  720 STGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL  764 (2341)
T ss_pred             ccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence            5443222222 2235566666776665677888888888877553

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.52  E-value=19  Score=37.23  Aligned_cols=399  Identities=15%  Similarity=0.124  Sum_probs=200.1

Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcC---CChhhHHHHHhc
Q 043676           11 VWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIAS---GTSENTNVVIDH   87 (446)
Q Consensus        11 l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~   87 (446)
                      |++++.+.+...+..+.++-+.. .++-....+.--+|.++.-+..-. ..+|...+.+|---..   .-|+ + .    
T Consensus       476 LkaenkdlqaeVlnrmfkIftsh-peNYricqelytvpllvlnmegfP-sslqvkiLkilEyAVtvvncvPe-q-E----  547 (2799)
T KOG1788|consen  476 LKAENKDLQAEVLNRMFKIFTSH-PENYRICQELYTVPLLVLNMEGFP-SSLQVKILKILEYAVTVVNCVPE-Q-E----  547 (2799)
T ss_pred             HHhcCcchhhHHHHHHHHHhccC-hHHhhHHhhccccchhhhhhcCCC-hHHHHHHHHHHHHHHhhhccCcH-H-H----
Confidence            56778888888888888776643 444444455567888887776655 4666655554422111   0111 1 1    


Q ss_pred             CChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcccc---chhHHHHHHHHHHHhhcCCC
Q 043676           88 GAVPIFVKLLSSP-SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHA---KLSMLRNATRTLSNFCRGKP  163 (446)
Q Consensus        88 ~~i~~L~~~L~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~---~~~~~~~a~~~L~~l~~~~~  163 (446)
                        +-.|+-+|+.+ +..++...+.....+...+...++.+.+-|.+..+...+.++.   .++- ..   -........+
T Consensus       548 --LlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdq-ys---gvsehydrnp  621 (2799)
T KOG1788|consen  548 --LLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQ-YS---GVSEHYDRNP  621 (2799)
T ss_pred             --HHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcch-hh---hHHHHhhcCC
Confidence              23456667664 3455666666667777777778888889998888887774422   1110 00   0111111111


Q ss_pred             CC-Chh---hhhhhHHHHHHhhcCC--CHhHH------HHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccch
Q 043676          164 EP-PFD---QVRPALPALAQLVHSN--DEDVL------TYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVL  231 (446)
Q Consensus       164 ~~-~~~---~~~~~~~~l~~ll~~~--~~~v~------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~  231 (446)
                      .. .+.   .....+-.--.+.+++  ...+.      .-.-.++..+..++.++...+.+..++..++.++-  +.+-|
T Consensus       622 ss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpfli--ndehR  699 (2799)
T KOG1788|consen  622 SSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFLI--NDEHR  699 (2799)
T ss_pred             CCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEeee--chHHH
Confidence            10 000   0000000001112221  11111      11234566677777777777888888888888773  44457


Q ss_pred             hHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCc-------h----HHHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 043676          232 TPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNH-------E----EIIKKEISWIISNITAGNREQIQAVIDAGL  300 (446)
Q Consensus       232 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-------~----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~  300 (446)
                      ...++++..|....+.+..    ..-+-.++..|+++-       .    .........++..+..-+...+..+.+.++
T Consensus       700 SslLrivscLitvdpkqvh----hqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatG  775 (2799)
T KOG1788|consen  700 SSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATG  775 (2799)
T ss_pred             HHHHHHHHHHhccCccccc----HHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhcccc
Confidence            7778888888766655322    112233444454410       1    233344555666665434444555667777


Q ss_pred             hHHHHHHHhc----------CCcchHHHHHHHHHH---hccCCCHHHHHH-------------HHHcCC---------hH
Q 043676          301 IRPIVNLLQN----------AEFDTKKEAAWAISN---ATSGGTQEQIKH-------------LVREGC---------VK  345 (446)
Q Consensus       301 i~~L~~ll~~----------~~~~v~~~a~~aL~~---l~~~~~~~~~~~-------------l~~~~~---------i~  345 (446)
                      +..|...+..          +|.-+-.+-...|..   ++...++.++.+             +.+.|.         +.
T Consensus       776 FslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viq  855 (2799)
T KOG1788|consen  776 FSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQ  855 (2799)
T ss_pred             HHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHH
Confidence            7777766642          111111122222221   111112222222             222231         11


Q ss_pred             HHHhc-ccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 043676          346 PLCDL-LLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTY  424 (446)
Q Consensus       346 ~L~~l-l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~  424 (446)
                      .+.++ ++.--+.-...-..+...+++.+.+......-.+.+++..+.+-.+|..+.|.+..-...+.++-.-..+++..
T Consensus       856 lllElalevlvppfLtSEsaAcaeVfelednifavntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSl  935 (2799)
T KOG1788|consen  856 LLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESL  935 (2799)
T ss_pred             HHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHH
Confidence            11111 01111111111122344444443332211111367788888888999999988887777778776666666666


Q ss_pred             cCCCC
Q 043676          425 WCGRN  429 (446)
Q Consensus       425 ~~~~~  429 (446)
                      ....+
T Consensus       936 aRasp  940 (2799)
T KOG1788|consen  936 ARASP  940 (2799)
T ss_pred             hhcCC
Confidence            54433

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.43  E-value=12  Score=39.69  Aligned_cols=264  Identities=11%  Similarity=0.108  Sum_probs=114.1

Q ss_pred             cchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCC---CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHH
Q 043676          143 AKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSN---DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRL  219 (446)
Q Consensus       143 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~---~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l  219 (446)
                      ...+++.....++.++...........-..+++.+-......   ..++.+.+..++.-++...-.....-.-.++++.+
T Consensus       854 ~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl  933 (1610)
T KOG1848|consen  854 RGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTL  933 (1610)
T ss_pred             ccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHH
Confidence            345566666667766665542111111112222222222222   34555555555555553211000000111556666


Q ss_pred             HHhcCC-CCccchhHHHHHHHHhhcCCchhhH----HHHhcCChHHHHHHhccCchHHHHHHHHHHHH--HHhcCCHHHH
Q 043676          220 VELLGH-PSPSVLTPALRTVGNIVTGDDFQTQ----CIINHGAVPYLLDMLVHNHEEIIKKEISWIIS--NITAGNREQI  292 (446)
Q Consensus       220 ~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~~----~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~--~l~~~~~~~~  292 (446)
                      ..+-+. .|..+-..|+..+++++..-..-..    ..-....+..+..  ..+ ...+-.+++|.+.  +++....+. 
T Consensus       934 ~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~s--s~~-~~~~l~e~lwi~ll~~L~~~~~ds- 1009 (1610)
T KOG1848|consen  934 LVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYS--SMK-SKEILPEVLWIMLLVHLADLCEDS- 1009 (1610)
T ss_pred             HHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcc--ccc-chhhhhhHHHHHHHHHHHHHhccc-
Confidence            655544 5666777777777777642211010    1111222333333  112 3455556666432  222211111 


Q ss_pred             HHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHH----HhcccCCCHHHHHHHHHHHHH
Q 043676          293 QAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPL----CDLLLCSDPEIVTVCLIGLEN  368 (446)
Q Consensus       293 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L----~~ll~~~~~~~~~~~~~~l~~  368 (446)
                      +.-+++|.++.+.+.+.++....... +|..+-.      ..+..+.+..-+...    -+.++.+..+.....+.++.+
T Consensus      1010 r~eVRngAvqtlfri~~Shg~~l~~~-aW~s~~w------~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIak 1082 (1610)
T KOG1848|consen 1010 RAEVRNGAVQTLFRIFNSHGSKLGTN-AWASCCW------LVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAK 1082 (1610)
T ss_pred             hHHHhhhHHHHHHHHHhhhcccCChh-HHHHHHH------HHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHH
Confidence            22234577777777776654433322 2222111      000011110000000    001122334455566777777


Q ss_pred             HHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 043676          369 ILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYW  425 (446)
Q Consensus       369 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  425 (446)
                      +|.-.-+.-      ...+.+....++  .++.+.++..+.++++.-.|.+.++...
T Consensus      1083 lf~e~fk~l------lnln~f~~vwe~--ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1083 LFSENFKLL------LNLNGFLDVWEE--LLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred             HHHHHHHHH------HhcccHHHHHHH--HHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence            765322221      112223333322  2556777888899999888888887663

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=91.25  E-value=18  Score=36.51  Aligned_cols=354  Identities=12%  Similarity=0.072  Sum_probs=168.2

Q ss_pred             HHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCC----CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHh
Q 043676           64 YEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSS----PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAEL  139 (446)
Q Consensus        64 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l  139 (446)
                      ..++.+|.-+.. ..+....+.+.| +..++-++..    .+..+.-.++..++.++..+. +...+++.+++..|+..-
T Consensus       327 ~~~~q~l~~lge-y~e~lpv~~~~g-~~~~~~~~~~~~q~~d~~l~~~~~k~~~~l~~h~k-fa~~fv~~~gi~kll~vp  403 (1516)
T KOG1832|consen  327 KYCIQCLEILGE-YVEVLPVLHEKG-VDVCIVLLERTSQLDDSPLLPDVMKLICALAAHRK-FAAMFVERRGILKLLAVP  403 (1516)
T ss_pred             HHHHHHHHHHHh-HHHHHHHHHHhC-chhhhhhhhhhhccccccccHHHHHHHHHHHHhhH-HHHHHHHhhhhHHHhcCC
Confidence            344455555544 445555555655 4444444432    344455566677777774443 455677778877776554


Q ss_pred             ccccchhHHHHHHHHHHHhhcCC------CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHh
Q 043676          140 NEHAKLSMLRNATRTLSNFCRGK------PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEA  213 (446)
Q Consensus       140 ~~~~~~~~~~~a~~~L~~l~~~~------~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~  213 (446)
                      .-+   ....-...||+.+....      -..........+..-+.++......-+.++...+.... .-......+-..
T Consensus       404 r~s---~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~~~~~l~~cs~~~~~~~~~~ff~~~f-~frail~~fd~~  479 (1516)
T KOG1832|consen  404 RVS---ETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAIELLDCSQDQARKNSALFFAAAF-VFRAILDAFDAQ  479 (1516)
T ss_pred             Cch---hhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHHHHHHHHhcchhhccchHHHHHHHHH-HHHHHHHHHhhh
Confidence            222   12223334444444332      01122334556666666776554333333222221100 000011112222


Q ss_pred             CcHHHHHHhcCC--------CCc-----------cchhHHHHHHHHhhcC-----CchhhHHHHhcCChHHHHHHhccCc
Q 043676          214 GVCPRLVELLGH--------PSP-----------SVLTPALRTVGNIVTG-----DDFQTQCIINHGAVPYLLDMLVHNH  269 (446)
Q Consensus       214 ~~~~~l~~ll~~--------~~~-----------~~~~~a~~~l~~l~~~-----~~~~~~~~~~~~~~~~l~~~l~~~~  269 (446)
                      +.+..|+.+++.        .+.           ......|.++......     -+..++.-+..+..+..+.-+..+.
T Consensus       480 d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~  559 (1516)
T KOG1832|consen  480 DSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAY  559 (1516)
T ss_pred             hHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCC
Confidence            445555555432        111           1112233333322210     1111112222233333333222221


Q ss_pred             -h----HHHHHHHHHHHHHHhcCCH-------HHHHHHHHcCChHHHHHHHhcC--------CcchHHHHHHHHHHhccC
Q 043676          270 -E----EIIKKEISWIISNITAGNR-------EQIQAVIDAGLIRPIVNLLQNA--------EFDTKKEAAWAISNATSG  329 (446)
Q Consensus       270 -~----~~v~~~a~~~l~~l~~~~~-------~~~~~~~~~~~i~~L~~ll~~~--------~~~v~~~a~~aL~~l~~~  329 (446)
                       .    ....++.+|-+-.+....+       .....+.+.+++..++.+....        ..++...|+.+|+-+.. 
T Consensus       560 ~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~-  638 (1516)
T KOG1832|consen  560 KPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTS-  638 (1516)
T ss_pred             CcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEe-
Confidence             1    1223344444444433222       2234466677888888777643        13556677777776655 


Q ss_pred             CCHHHHHHHHHc--------CChHHHHhccc----CCCHHHHHHHHHHHHHHHHhhhhhhccc-----C-------C---
Q 043676          330 GTQEQIKHLVRE--------GCVKPLCDLLL----CSDPEIVTVCLIGLENILKVGEAERNMG-----T-------T---  382 (446)
Q Consensus       330 ~~~~~~~~l~~~--------~~i~~L~~ll~----~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~-------~---  382 (446)
                       -|.....++..        .++..+++.-.    .-||+++..|+.+|.+++.-.+...+..     .       .   
T Consensus       639 -iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~  717 (1516)
T KOG1832|consen  639 -IPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGA  717 (1516)
T ss_pred             -cchHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccC
Confidence             34444444431        13444444322    2489999999999999876653322110     0       0   


Q ss_pred             -------CCccchHHHHHHHhChHHHHHHhhcCCCH-----HHHHHHHHHHHHhcC
Q 043676          383 -------IGDVNQYAQFVEEAGGLEKIENLQSHDNN-----EIHEKSVKIFKTYWC  426 (446)
Q Consensus       383 -------~~~~~~~~~~l~~~~~~~~l~~l~~~~~~-----~v~~~a~~~l~~~~~  426 (446)
                             ..........++..+|+..|.+|++..+|     .++..|.+.|-.+-.
T Consensus       718 ~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR  773 (1516)
T KOG1832|consen  718 GTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLAR  773 (1516)
T ss_pred             CCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccc
Confidence                   01123345667778899998888876653     466777766654433

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=91.01  E-value=25  Score=37.71  Aligned_cols=114  Identities=12%  Similarity=0.150  Sum_probs=71.7

Q ss_pred             cCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHH
Q 043676          255 HGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQ  334 (446)
Q Consensus       255 ~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~  334 (446)
                      .+++|.|-.-|.+. +..+|..|...++.+......... =-...+...++.-+.+.+.++|..++....++.... +..
T Consensus       258 ~~vip~l~~eL~se-~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~-~~~  334 (1266)
T KOG1525|consen  258 LAVIPQLEFELLSE-QEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNN-PSI  334 (1266)
T ss_pred             HHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcC-chh
Confidence            36788888888888 899999999999999764222211 001234555556666677778877777777665432 111


Q ss_pred             HH-----------------------------------HHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHh
Q 043676          335 IK-----------------------------------HLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKV  372 (446)
Q Consensus       335 ~~-----------------------------------~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~  372 (446)
                      .+                                   .+... .+..+.+-+.+..+.||..|+..|..+++.
T Consensus       335 ~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~  406 (1266)
T KOG1525|consen  335 AKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN  406 (1266)
T ss_pred             hhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            00                                   00111 222333344567889999999999988874

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=91.00  E-value=12  Score=33.86  Aligned_cols=167  Identities=13%  Similarity=0.143  Sum_probs=118.4

Q ss_pred             HHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc-CCHHHHHHHHH-cCC-hHHHHHHHhcC-----C--------cc
Q 043676          251 CIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA-GNREQIQAVID-AGL-IRPIVNLLQNA-----E--------FD  314 (446)
Q Consensus       251 ~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~-~~~-i~~L~~ll~~~-----~--------~~  314 (446)
                      .+++.. +..+...|... ...+...+...|..++. .+......+.. -++ .+.+-+++...     .        +.
T Consensus        52 ~iL~~~-~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~s  129 (330)
T PF11707_consen   52 SILQNH-LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPS  129 (330)
T ss_pred             HHHHHH-HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcC
Confidence            444443 77888899888 77788899999999988 66566666654 233 44455555321     1        28


Q ss_pred             hHHHHHHHHHHhccCCCHHHHHHHHH-cCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHH
Q 043676          315 TKKEAAWAISNATSGGTQEQIKHLVR-EGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFV  393 (446)
Q Consensus       315 v~~~a~~aL~~l~~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l  393 (446)
                      +|...+..+..+...+++.....+++ .+.+..+.+-+..+++++....+..+..-+-.++...         +..+..+
T Consensus       130 iR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~---------r~~K~~~  200 (330)
T PF11707_consen  130 IRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVS---------RSTKCKL  200 (330)
T ss_pred             HHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCC---------hhhhhhh
Confidence            99999999999988888887777765 5668888888999889999999999986554443322         1123344


Q ss_pred             HHhChHHHHHHhhcCCCH----HHHHHHHHHHHHhcCCC
Q 043676          394 EEAGGLEKIENLQSHDNN----EIHEKSVKIFKTYWCGR  428 (446)
Q Consensus       394 ~~~~~~~~l~~l~~~~~~----~v~~~a~~~l~~~~~~~  428 (446)
                      -....+..|..+-..+++    .+.+.+.+.+..+..+.
T Consensus       201 fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p  239 (330)
T PF11707_consen  201 FNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDP  239 (330)
T ss_pred             cCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCC
Confidence            445578888888877777    88888888888776543

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=90.78  E-value=0.7  Score=38.35  Aligned_cols=83  Identities=16%  Similarity=0.252  Sum_probs=60.8

Q ss_pred             cchhHHHHHHHHhhcCCchhhHHHHhc-------CChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHH-HcCC
Q 043676          229 SVLTPALRTVGNIVTGDDFQTQCIINH-------GAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVI-DAGL  300 (446)
Q Consensus       229 ~~~~~a~~~l~~l~~~~~~~~~~~~~~-------~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~  300 (446)
                      .-+..|+.+++.|+-.. .+.+.++..       .++..|..++...++...|+.|+..|.+++.++......+. +.+.
T Consensus       139 SPqrlaLEaLcKLsV~e-~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIE-NNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CHHHHHHHHHHHhheec-cCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            35778999999998632 233333322       35667777787776889999999999999987776665544 6788


Q ss_pred             hHHHHHHHhcCC
Q 043676          301 IRPIVNLLQNAE  312 (446)
Q Consensus       301 i~~L~~ll~~~~  312 (446)
                      +..|+.++.+.+
T Consensus       218 i~~Li~FiE~a~  229 (257)
T PF12031_consen  218 ISHLIAFIEDAE  229 (257)
T ss_pred             HHHHHHHHHHHH
Confidence            999999997654

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=90.68  E-value=1.2  Score=33.88  Aligned_cols=74  Identities=14%  Similarity=0.151  Sum_probs=59.0

Q ss_pred             ChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCC--HHHHHHHHHH
Q 043676          343 CVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDN--NEIHEKSVKI  420 (446)
Q Consensus       343 ~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~--~~v~~~a~~~  420 (446)
                      ++..|..-+.++++.++..++..|..++..+...            |...+...++++.|..+...+.  +.|++++..+
T Consensus        38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~------------f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~l  105 (133)
T smart00288       38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSK------------FHLEVASKEFLNELVKLIKPKYPLPLVKKRILEL  105 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH------------HHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            3555666677899999999999999999987654            6788888889999998876643  3489999999


Q ss_pred             HHHhcCCC
Q 043676          421 FKTYWCGR  428 (446)
Q Consensus       421 l~~~~~~~  428 (446)
                      +..+...-
T Consensus       106 i~~W~~~f  113 (133)
T smart00288      106 IQEWADAF  113 (133)
T ss_pred             HHHHHHHH
Confidence            98886544

Unpublished observations. Domain of unknown function.

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=90.61  E-value=2.9  Score=36.69  Aligned_cols=135  Identities=15%  Similarity=0.238  Sum_probs=75.7

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhH-HHHHhcCChHHHHH----hhC--------CCCHHHHHHHHHH
Q 043676           45 GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENT-NVVIDHGAVPIFVK----LLS--------SPSDDVREQAVWA  111 (446)
Q Consensus        45 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~----~L~--------~~~~~v~~~a~~~  111 (446)
                      -++|.++.++++.+ +.+|..++.+|..+....+... ..+...|..+.+.+    ++.        +++..+...+.-+
T Consensus       119 liiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~  197 (282)
T PF10521_consen  119 LIIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA  197 (282)
T ss_pred             HHHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence            36899999999998 8999999999999998443333 33556676655444    333        2345566777777


Q ss_pred             HHHhhCC-----ChH---HHHHHHHcCChHHHHHHhcccc---chhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHh
Q 043676          112 LGNVAGD-----SPR---CRDLVLSQGALIPLLAELNEHA---KLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQL  180 (446)
Q Consensus       112 l~~l~~~-----~~~---~~~~~~~~~~i~~l~~~l~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~l  180 (446)
                      +..++..     ...   ....++..|    ++.-+....   .+.++...+..+..+...-..........+++.+.+.
T Consensus       198 L~~L~~~~~~~~~~~r~~~l~~~l~e~----IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~  273 (282)
T PF10521_consen  198 LLSLLKTQENDDSNPRSTWLDKILREG----ILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQI  273 (282)
T ss_pred             HHHHHHhhccCCcccchHHHHHHHHHH----HhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            7777421     111   111111211    222221112   3556666665555555443333333445566666665


Q ss_pred             hcCC
Q 043676          181 VHSN  184 (446)
Q Consensus       181 l~~~  184 (446)
                      +.+.
T Consensus       274 l~np  277 (282)
T PF10521_consen  274 LENP  277 (282)
T ss_pred             hcCC
Confidence            5543

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=90.25  E-value=11  Score=32.48  Aligned_cols=213  Identities=20%  Similarity=0.133  Sum_probs=120.9

Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHhcCCCC--C-cHHHHH-------h----cCCHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 043676            8 VAGVWSDDNSLQLEATTLSRKLLSFDRN--P-PIEKVI-------Q----SGVVPRFVEFLMREDYPQLQYEAAWVLINI   73 (446)
Q Consensus         8 ~~~l~s~~~~~~~~a~~~l~~l~~~~~~--~-~~~~~~-------~----~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l   73 (446)
                      +.+|.+.+...-..|+..+.++...-.-  + ..+.+.       +    .|+.+.+++-+.++..   ...++..|..+
T Consensus        13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t---~e~tl~lL~~L   89 (262)
T PF14225_consen   13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSST---YELTLRLLSRL   89 (262)
T ss_pred             HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCc---HHHHHHHHHHH
Confidence            5678888888888888888887665311  1 111111       1    2344445555555543   44555566665


Q ss_pred             cCC-------ChhhHHHHHhcCChHHHHHhhCCCC----HHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccc
Q 043676           74 ASG-------TSENTNVVIDHGAVPIFVKLLSSPS----DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEH  142 (446)
Q Consensus        74 ~~~-------~~~~~~~~~~~~~i~~L~~~L~~~~----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~  142 (446)
                      +.-       +++.|-.+.-.+.+|.++.-+.+++    ......++..|..+|....        ...+..++....+.
T Consensus        90 ~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~  161 (262)
T PF14225_consen   90 TPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKG  161 (262)
T ss_pred             hcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhc
Confidence            541       1223333333355677777777665    1334456677777773221        11244444444333


Q ss_pred             c---chhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHH
Q 043676          143 A---KLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRL  219 (446)
Q Consensus       143 ~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l  219 (446)
                      .   ..+....++..|..-.-  |.    .....+..++.++.++-+.++..++.+|..+....+-...  ...+++..+
T Consensus       162 ~fr~~~dfl~~v~~~l~~~f~--P~----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispl  233 (262)
T PF14225_consen  162 RFRDKDDFLSQVVSYLREAFF--PD----HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPL  233 (262)
T ss_pred             CCCCHHHHHHHHHHHHHHHhC--ch----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHH
Confidence            2   23344444444443211  21    2245677788999999999999999999999876553322  445788889


Q ss_pred             HHhcCCCCccchhHHHHHHHHhh
Q 043676          220 VELLGHPSPSVLTPALRTVGNIV  242 (446)
Q Consensus       220 ~~ll~~~~~~~~~~a~~~l~~l~  242 (446)
                      .++++.+-.   ..|+.++-+..
T Consensus       234 lrlL~t~~~---~eAL~VLd~~v  253 (262)
T PF14225_consen  234 LRLLQTDLW---MEALEVLDEIV  253 (262)
T ss_pred             HHHhCCccH---HHHHHHHHHHH
Confidence            998866543   45555554443

>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor

Probab=89.83  E-value=8.7  Score=38.35  Aligned_cols=157  Identities=18%  Similarity=0.208  Sum_probs=107.1

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676            3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN   82 (446)
Q Consensus         3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~   82 (446)
                      .|..|+.+|.|.+..+...+-..+......+ .++       -++..|+...-+...    ..|+.+|..+-.  |..+ 
T Consensus         5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~-~~~-------~l~~~l~~y~~~t~s----~~~~~il~~~~~--P~~K-   69 (668)
T PF04388_consen    5 SITELLSLLESNDLSVLEEIKALLQELLNSD-REP-------WLVNGLVDYYLSTNS----QRALEILVGVQE--PHDK-   69 (668)
T ss_pred             cHHHHHHHhcCCchhhHHHHHHHHHHHhhcc-chH-------HHHHHHHHHHhhcCc----HHHHHHHHhcCC--ccHH-
Confidence            4677888999999888888888887766554 222       136666666544442    345666665533  3222 


Q ss_pred             HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 043676           83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK  162 (446)
Q Consensus        83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  162 (446)
                           .++..|-..+..  +..|..++..|+.+....|..-..+.+...+..|++.|..+.+..+...|+.+|..|.-.-
T Consensus        70 -----~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i  142 (668)
T PF04388_consen   70 -----HLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI  142 (668)
T ss_pred             -----HHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence                 224555555553  5678889999999998877777788888999999999988889999999999998887665


Q ss_pred             CCCChhhhhhhHHHHHHhh
Q 043676          163 PEPPFDQVRPALPALAQLV  181 (446)
Q Consensus       163 ~~~~~~~~~~~~~~l~~ll  181 (446)
                      +.........++.....++
T Consensus       143 p~~l~~~L~~Lf~If~Rl~  161 (668)
T PF04388_consen  143 PSSLGPHLPDLFNIFGRLL  161 (668)
T ss_pred             cchhhHHHHHHHHHHHHHH
Confidence            5443334444444444444

The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=89.81  E-value=3.5  Score=29.20  Aligned_cols=69  Identities=17%  Similarity=0.190  Sum_probs=55.3

Q ss_pred             cCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHH
Q 043676          341 EGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKI  420 (446)
Q Consensus       341 ~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~  420 (446)
                      ...+..|++-+..+++.....++..+..+.+....              ...+.+.|+.+-+.++...-+++.+.....+
T Consensus        29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a--------------~~~l~~iG~~~fL~klr~~~~~~~~~~id~i   94 (98)
T PF14726_consen   29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYA--------------AQILRDIGAVRFLSKLRPNVEPNLQAEIDEI   94 (98)
T ss_pred             HHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHH--------------HHHHHHccHHHHHHHHHhcCCHHHHHHHHHH
Confidence            34566777777778878889999999998876555              4789999999999999988888888777777


Q ss_pred             HHH
Q 043676          421 FKT  423 (446)
Q Consensus       421 l~~  423 (446)
                      ++.
T Consensus        95 l~~   97 (98)
T PF14726_consen   95 LDQ   97 (98)
T ss_pred             Hhc
Confidence            654

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=89.80  E-value=0.99  Score=34.32  Aligned_cols=73  Identities=11%  Similarity=0.000  Sum_probs=57.4

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChH-HHHHHHHHHHHHcC
Q 043676            3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ-LQYEAAWVLINIAS   75 (446)
Q Consensus         3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~-~~~~a~~~L~~l~~   75 (446)
                      ++..|.+.|++.++.++..|+..|-.+...-+.....++...+++..|..++....... ++..++..+...+.
T Consensus        38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~  111 (133)
T smart00288       38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD  111 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence            45677888899999999999999988777644555677778889999999988765333 88888888877664

Unpublished observations. Domain of unknown function.

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=89.73  E-value=2.9  Score=34.29  Aligned_cols=141  Identities=13%  Similarity=0.180  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcC----CCChHHHHHHHHHHHHHcC-CChhhHHHHHhcCChHHH
Q 043676           19 QLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMR----EDYPQLQYEAAWVLINIAS-GTSENTNVVIDHGAVPIF   93 (446)
Q Consensus        19 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~----~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L   93 (446)
                      ...|+..|..+++.  ++....+.+..+--.+-..|..    ...+-+|..++.+++.+.. ++++....+....++|..
T Consensus       117 vcnaL~lLQclaSh--Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc  194 (315)
T COG5209         117 VCNALNLLQCLASH--PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC  194 (315)
T ss_pred             HHHHHHHHHHHhcC--cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence            34566666666665  4444455555433333444432    2235678899999999998 445666677788999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHH---Hc----CChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676           94 VKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVL---SQ----GALIPLLAELNEHAKLSMLRNATRTLSNFCRG  161 (446)
Q Consensus        94 ~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~---~~----~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  161 (446)
                      ++.+..+++--+..++.++..+..++....-...   ..    ..+..++..+-+.....+...++++-..++.+
T Consensus       195 LrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~  269 (315)
T COG5209         195 LRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK  269 (315)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence            9999999888888899888888766543221111   10    11222222222334455666666665555554

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=89.66  E-value=33  Score=36.91  Aligned_cols=125  Identities=9%  Similarity=0.054  Sum_probs=74.7

Q ss_pred             CChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhc
Q 043676          299 GLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERN  378 (446)
Q Consensus       299 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~  378 (446)
                      +++|.|-.-|.+.+..+|..|...++.+...........  ........+.-+.+.+.++|..+++...+++...+...+
T Consensus       259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~--~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~  336 (1266)
T KOG1525|consen  259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSET--YDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAK  336 (1266)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhccc--chHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhh
Confidence            689999999999999999999999999987422111100  012234444455667778888888777777655333221


Q ss_pred             ccCC----------------------CCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 043676          379 MGTT----------------------IGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWC  426 (446)
Q Consensus       379 ~~~~----------------------~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  426 (446)
                      -...                      ......+...+... .+...-+-+.+....|+..|..-+..+|.
T Consensus       337 ~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk  405 (1266)
T KOG1525|consen  337 ASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK  405 (1266)
T ss_pred             HHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            1000                      11122222333322 44455555667778888888776666654

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=89.56  E-value=2.7  Score=32.29  Aligned_cols=73  Identities=15%  Similarity=0.262  Sum_probs=57.2

Q ss_pred             ChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhc-CCCHH---HHHHHH
Q 043676          343 CVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQS-HDNNE---IHEKSV  418 (446)
Q Consensus       343 ~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~-~~~~~---v~~~a~  418 (446)
                      ++..|..-|.++++.++..|+..|..+++.+...            |...+....+++.+..+.. .....   |++++.
T Consensus        43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~------------f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l  110 (140)
T PF00790_consen   43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPR------------FHREVASKEFLDELVKLIKSKKTDPETPVKEKIL  110 (140)
T ss_dssp             HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHH------------HHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHH
Confidence            4566777778899999999999999999987664            6778877788888888754 34444   899999


Q ss_pred             HHHHHhcCC
Q 043676          419 KIFKTYWCG  427 (446)
Q Consensus       419 ~~l~~~~~~  427 (446)
                      .++..+-..
T Consensus       111 ~ll~~W~~~  119 (140)
T PF00790_consen  111 ELLQEWAEA  119 (140)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988877443

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=89.04  E-value=1.4  Score=33.94  Aligned_cols=74  Identities=9%  Similarity=0.030  Sum_probs=58.8

Q ss_pred             ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCC-CHH---HHHHHHHHHHHHHHhh
Q 043676          300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCS-DPE---IVTVCLIGLENILKVG  373 (446)
Q Consensus       300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~---~~~~~~~~l~~l~~~~  373 (446)
                      ++..|.+-+.++++.++..|+..|-.+..++++.....+....++..|..++... ...   |+..++..+.......
T Consensus        43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f  120 (140)
T PF00790_consen   43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF  120 (140)
T ss_dssp             HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence            5667778888899999999999999999987777777777777888888887643 333   8999888888776544

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=89.04  E-value=4.7  Score=35.08  Aligned_cols=158  Identities=17%  Similarity=0.188  Sum_probs=95.8

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcC--ChHHHHHhhC----CCCHHHHHHHHHHHHHhhCCCh
Q 043676           47 VPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHG--AVPIFVKLLS----SPSDDVREQAVWALGNVAGDSP  120 (446)
Q Consensus        47 ~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~L~~~L~----~~~~~v~~~a~~~l~~l~~~~~  120 (446)
                      ...+...+.+-. ++-+.-++..+.-++. ++.....+...+  ....+..++.    +..+..+-.++++++|+.....
T Consensus        65 ~~~~~~~~~~Wp-~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~  142 (268)
T PF08324_consen   65 LILLLKILLSWP-PESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP  142 (268)
T ss_dssp             HHHHHHHHCCS--CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHhCC-CccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc
Confidence            445555555554 4567778888877777 555555554433  2344444433    2567888899999999996554


Q ss_pred             HHHHHHHHcC--ChHHHHHHhcccc---chhHHHHHHHHHHHhhcCC-CCC-ChhhhhhhHHHHHHhhcC--CCHhHHHH
Q 043676          121 RCRDLVLSQG--ALIPLLAELNEHA---KLSMLRNATRTLSNFCRGK-PEP-PFDQVRPALPALAQLVHS--NDEDVLTY  191 (446)
Q Consensus       121 ~~~~~~~~~~--~i~~l~~~l~~~~---~~~~~~~a~~~L~~l~~~~-~~~-~~~~~~~~~~~l~~ll~~--~~~~v~~~  191 (446)
                       .+..+....  .+...+..+....   +..++..++..+.|++... ... ........+..+...+..  .|++....
T Consensus       143 -~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R  221 (268)
T PF08324_consen  143 -GRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYR  221 (268)
T ss_dssp             -CHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHH
T ss_pred             -cHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHH
Confidence             344444322  2333333332222   6788888889999987654 111 222333456666664432  58999999


Q ss_pred             HHHHHHHhccCCcHHH
Q 043676          192 ACWSLSYLADGTNDKI  207 (446)
Q Consensus       192 ~~~~l~~l~~~~~~~~  207 (446)
                      ++-+++++...++...
T Consensus       222 ~LvAlGtL~~~~~~~~  237 (268)
T PF08324_consen  222 LLVALGTLLSSSDSAK  237 (268)
T ss_dssp             HHHHHHHHHCCSHHHH
T ss_pred             HHHHHHHHhccChhHH
Confidence            9999999996655433

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=89.02  E-value=8.4  Score=30.92  Aligned_cols=71  Identities=18%  Similarity=0.174  Sum_probs=53.8

Q ss_pred             CChHHHHHHhccCchHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhcc
Q 043676          256 GAVPYLLDMLVHNHEEIIKKEISWIISNITAG-NREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATS  328 (446)
Q Consensus       256 ~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  328 (446)
                      ..++.+.+-|... +...+--|...+..+... ..+.+-.++. .++.++...|.+.++++...++.+|..++.
T Consensus        38 ~~Lpif~dGL~Et-~~Py~flA~~g~~dll~~~~~~kilPvlP-qLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~  109 (183)
T PF10274_consen   38 HYLPIFFDGLRET-EHPYRFLARQGIKDLLERGGGEKILPVLP-QLIIPLKRALNTRDPEVFCATLKALQQLVT  109 (183)
T ss_pred             hHHHHHHhhhhcc-CccHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            3577788888777 666677777777777664 4554444443 578888899999999999999999999944

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=88.93  E-value=25  Score=34.66  Aligned_cols=134  Identities=16%  Similarity=0.151  Sum_probs=81.4

Q ss_pred             hHHHHHHhcc---ccchhHHHHHHHHHHHhhcCC----CCCChhhhhhhHHHHHHhhc----CCCHhHHHHHHHHHHHhc
Q 043676          132 LIPLLAELNE---HAKLSMLRNATRTLSNFCRGK----PEPPFDQVRPALPALAQLVH----SNDEDVLTYACWSLSYLA  200 (446)
Q Consensus       132 i~~l~~~l~~---~~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~~~~l~~ll~----~~~~~v~~~~~~~l~~l~  200 (446)
                      +..+..++..   ..++.++..++.+++.+....    +.........+++.+...+.    ..+.+-+...+.+|+|+.
T Consensus       395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g  474 (574)
T smart00638      395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG  474 (574)
T ss_pred             HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence            4455566632   124567777777777776532    11112233556666666554    346666788889999876


Q ss_pred             cCCcHHHHHHHHhCcHHHHHHhcC-C--CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhcc-CchHHHHHH
Q 043676          201 DGTNDKIQAVIEAGVCPRLVELLG-H--PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVH-NHEEIIKKE  276 (446)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~l~~ll~-~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~v~~~  276 (446)
                      ...           .++.+..++. .  .+..+|..|+++|..++...+....        +.++.++.+ ..+.++|..
T Consensus       475 ~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~--------~~l~~i~~n~~e~~EvRia  535 (574)
T smart00638      475 HPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ--------EVLLPIYLNRAEPPEVRMA  535 (574)
T ss_pred             Chh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH--------HHHHHHHcCCCCChHHHHH
Confidence            532           2233444444 2  3456899999999988865554333        456666654 347789988


Q ss_pred             HHHHHHHH
Q 043676          277 ISWIISNI  284 (446)
Q Consensus       277 a~~~l~~l  284 (446)
                      |+..|...
T Consensus       536 A~~~lm~t  543 (574)
T smart00638      536 AVLVLMET  543 (574)
T ss_pred             HHHHHHhc
Confidence            88777654

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=88.85  E-value=12  Score=36.01  Aligned_cols=218  Identities=9%  Similarity=-0.032  Sum_probs=121.0

Q ss_pred             ccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc-----------CCCHhHHHHHHHHHHHhccCCcHHHHHH
Q 043676          142 HAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH-----------SNDEDVLTYACWSLSYLADGTNDKIQAV  210 (446)
Q Consensus       142 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~-----------~~~~~v~~~~~~~l~~l~~~~~~~~~~~  210 (446)
                      +++.++...+-..|..+...      .....++..|..+..           ..++.++..++..|+.=....      -
T Consensus       248 d~~~~V~~~ae~~LKr~~~~------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa------~  315 (501)
T PF13001_consen  248 DSNSSVSDRAEDLLKRLSVS------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAA------T  315 (501)
T ss_pred             CCcchHHHHHHHHHhhcCCC------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHH------h
Confidence            34556666676677666554      233556666766665           236778888877776521100      0


Q ss_pred             HHhCcHHHHHHhcCCC--CccchhHHHHHH---HHhhcCCchhhHHHHhcCChHHHHHHhc-------cCchHHHHHHHH
Q 043676          211 IEAGVCPRLVELLGHP--SPSVLTPALRTV---GNIVTGDDFQTQCIINHGAVPYLLDMLV-------HNHEEIIKKEIS  278 (446)
Q Consensus       211 ~~~~~~~~l~~ll~~~--~~~~~~~a~~~l---~~l~~~~~~~~~~~~~~~~~~~l~~~l~-------~~~~~~v~~~a~  278 (446)
                      .....+..+..-+.+.  +.+++..++..+   .....+.....-..+...+...+...+.       ...+...|..+.
T Consensus       316 ~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aY  395 (501)
T PF13001_consen  316 SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAY  395 (501)
T ss_pred             CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHH
Confidence            1113334444445554  566777777777   5555444333222332223333333332       112678899999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHH-HHHHHcCChHHH-HhcccCCCH
Q 043676          279 WIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQI-KHLVREGCVKPL-CDLLLCSDP  356 (446)
Q Consensus       279 ~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~-~~l~~~~~i~~L-~~ll~~~~~  356 (446)
                      .+|+.++...+....  -+.+++..|++-+..+.++++..+-.||..++..-....- ...........+ .....+...
T Consensus       396 e~lG~L~~~~p~l~~--~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~  473 (501)
T PF13001_consen  396 ETLGLLAKRAPSLFS--KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVR  473 (501)
T ss_pred             HHHHHHHccCccccc--ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhH
Confidence            999999886555321  1235788888888888899999999999888653111000 000000011112 222234456


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 043676          357 EIVTVCLIGLENILKVG  373 (446)
Q Consensus       357 ~~~~~~~~~l~~l~~~~  373 (446)
                      .++..|++....++..+
T Consensus       474 ~~R~~avk~an~~fpf~  490 (501)
T PF13001_consen  474 SCRYAAVKYANACFPFS  490 (501)
T ss_pred             HHHHHHHHHHHHhCCcc
Confidence            67777777777766543

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=88.83  E-value=4.4  Score=36.73  Aligned_cols=209  Identities=17%  Similarity=0.150  Sum_probs=110.1

Q ss_pred             HhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC--C
Q 043676           42 IQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGD--S  119 (446)
Q Consensus        42 ~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~--~  119 (446)
                      ....++..+..++..+.++......+.++..-...-    ..-+...+++.+.+-+.+..+.+|..-+..++.....  +
T Consensus        19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~   94 (339)
T PF12074_consen   19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN   94 (339)
T ss_pred             hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence            334567777888877655677777777776655311    0011224567788888887777888888888887741  1


Q ss_pred             hHHHHHHHHcCChHHHHHHhcc---ccchhHH---HHHHHHHHHhhcCC-----------------CCCChhhhhhhHHH
Q 043676          120 PRCRDLVLSQGALIPLLAELNE---HAKLSML---RNATRTLSNFCRGK-----------------PEPPFDQVRPALPA  176 (446)
Q Consensus       120 ~~~~~~~~~~~~i~~l~~~l~~---~~~~~~~---~~a~~~L~~l~~~~-----------------~~~~~~~~~~~~~~  176 (446)
                      ......  -...++.++..+.+   ++-+..+   ..++.++..+....                 +...+....     
T Consensus        95 ~~~~~~--~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~-----  167 (339)
T PF12074_consen   95 SDSLKF--AEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSE-----  167 (339)
T ss_pred             chHHHH--HHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCH-----
Confidence            111111  22356677776632   1111111   01111111111111                 001111111     


Q ss_pred             HHHhhcC-CCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC--CccchhHHHHHHHHhhcCCchhhHHHH
Q 043676          177 LAQLVHS-NDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHP--SPSVLTPALRTVGNIVTGDDFQTQCII  253 (446)
Q Consensus       177 l~~ll~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~  253 (446)
                        ++... .+++-....++++..+..........-....+-..++.++-++  .+.+|..|+..+..+...++..    +
T Consensus       168 --kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l  241 (339)
T PF12074_consen  168 --KVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----L  241 (339)
T ss_pred             --HHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----H
Confidence              12222 3455555666666666544332221111224556788888887  8899999999999998877763    2


Q ss_pred             hcCChHHHHHHhcc
Q 043676          254 NHGAVPYLLDMLVH  267 (446)
Q Consensus       254 ~~~~~~~l~~~l~~  267 (446)
                      ...++..+-..+..
T Consensus       242 ~~~li~~l~~~l~~  255 (339)
T PF12074_consen  242 SKSLISGLWKWLSS  255 (339)
T ss_pred             HHHHHHHHHHHHHh
Confidence            23345556666543

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.82  E-value=28  Score=34.94  Aligned_cols=161  Identities=14%  Similarity=0.104  Sum_probs=89.9

Q ss_pred             HHHHhCcHHHHHHhcCCCCccch-hHHHHHHHHhhcCCchhhHHHHhcCChHHHHH-HhccCc-hHHHHHHHHHHHHHHh
Q 043676          209 AVIEAGVCPRLVELLGHPSPSVL-TPALRTVGNIVTGDDFQTQCIINHGAVPYLLD-MLVHNH-EEIIKKEISWIISNIT  285 (446)
Q Consensus       209 ~~~~~~~~~~l~~ll~~~~~~~~-~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~-~l~~~~-~~~v~~~a~~~l~~l~  285 (446)
                      .+.+.+-++.+-+-+...|.+.| ..|+..+.-|+...+.....++... +..++. ...+++ ++.-+..+.+.+..++
T Consensus       356 ElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~-v~~~l~~y~~nPS~nWk~kd~aiyL~tala  434 (960)
T KOG1992|consen  356 ELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSE-VQRLLDQYSKNPSGNWKKKDRAIYLVTALA  434 (960)
T ss_pred             HHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHhccCCCccccccchhhhhhHHHH
Confidence            35555566666666766666654 5678888889887766555554332 233333 333331 4455566777777775


Q ss_pred             cCCHHHHH------------HHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccC
Q 043676          286 AGNREQIQ------------AVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC  353 (446)
Q Consensus       286 ~~~~~~~~------------~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~  353 (446)
                      ........            .+....++|.|..--....|-++..++.-+.-+=..-.+++.   +.  .++.+++.++.
T Consensus       435 ik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~l---m~--~~p~li~~L~a  509 (960)
T KOG1992|consen  435 IKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHL---MA--LLPRLIRFLEA  509 (960)
T ss_pred             hhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHH---HH--HHHHHHHhccC
Confidence            42221111            111112222221100123455555555444433222223332   33  68999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhhhh
Q 043676          354 SDPEIVTVCLIGLENILKVGEA  375 (446)
Q Consensus       354 ~~~~~~~~~~~~l~~l~~~~~~  375 (446)
                      +..-+..+|..++.+++...++
T Consensus       510 ~s~vvhsYAA~aiEkil~vre~  531 (960)
T KOG1992|consen  510 ESRVVHSYAAIAIEKLLTVREN  531 (960)
T ss_pred             cchHHHHHHHHHHHhccccccC
Confidence            9999999999999999887776

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=88.41  E-value=6  Score=34.71  Aligned_cols=137  Identities=11%  Similarity=0.121  Sum_probs=74.2

Q ss_pred             CcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhh-HHHHhcCChHHHHHHh----c--------cCchHHHHHHHHHH
Q 043676          214 GVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQT-QCIINHGAVPYLLDML----V--------HNHEEIIKKEISWI  280 (446)
Q Consensus       214 ~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~~~~~l~~~l----~--------~~~~~~v~~~a~~~  280 (446)
                      -++|.++.++++.++.++..++.++..+....+... ..+...|..+.+.+.+    .        .. ...+-..+.-+
T Consensus       119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~-s~~Ll~~ay~~  197 (282)
T PF10521_consen  119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDE-SLELLQAAYPA  197 (282)
T ss_pred             HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchh-hHHHHHHHHHH
Confidence            568999999999999999999999999987655433 2244666655544433    2        12 44566666666


Q ss_pred             HHHHhc-----CC---HHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhccc
Q 043676          281 ISNITA-----GN---REQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLL  352 (446)
Q Consensus       281 l~~l~~-----~~---~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~  352 (446)
                      +..++.     .+   ......++..|++..+...-+...+.++...+..+..+...-+....+++-+  .++.+.+.+.
T Consensus       198 L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~r--ii~~l~~~l~  275 (282)
T PF10521_consen  198 LLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQR--IIPVLSQILE  275 (282)
T ss_pred             HHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHH--HHHHHHHHhc
Confidence            666643     11   1111222222333322222211235566666655555544333333333332  4555555444


Q ss_pred             C
Q 043676          353 C  353 (446)
Q Consensus       353 ~  353 (446)
                      +
T Consensus       276 n  276 (282)
T PF10521_consen  276 N  276 (282)
T ss_pred             C
Confidence            4

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein

Probab=88.31  E-value=8.7  Score=29.54  Aligned_cols=74  Identities=16%  Similarity=0.165  Sum_probs=55.5

Q ss_pred             hHHHHhccc-CCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHH-HHHhhcC---CCHHHHHHHH
Q 043676          344 VKPLCDLLL-CSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEK-IENLQSH---DNNEIHEKSV  418 (446)
Q Consensus       344 i~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-l~~l~~~---~~~~v~~~a~  418 (446)
                      +..|..=+. +.++.++..++..|..+++.+...            |...+..-++++. |..+...   .+.+|+++..
T Consensus        40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~------------fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil  107 (141)
T cd03565          40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHR------------FHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVL  107 (141)
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHH------------HHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHH
Confidence            333444344 568889999999999999988775            6778888888887 8888753   3468999999


Q ss_pred             HHHHHhcCCCC
Q 043676          419 KIFKTYWCGRN  429 (446)
Q Consensus       419 ~~l~~~~~~~~  429 (446)
                      .++..+...-.
T Consensus       108 ~li~~W~~~f~  118 (141)
T cd03565         108 ALIQAWADAFR  118 (141)
T ss_pred             HHHHHHHHHhC
Confidence            99998865443

The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=88.29  E-value=13  Score=30.36  Aligned_cols=71  Identities=21%  Similarity=0.263  Sum_probs=56.1

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHH
Q 043676           46 VVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRC  122 (446)
Q Consensus        46 ~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~  122 (446)
                      .++.++++..+++ ..++..|+..+..+....--+-     ...+|.++.+..++++.++..|...+..+.+..+..
T Consensus         9 yl~~Il~~~~~~~-~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~   79 (187)
T PF12830_consen    9 YLKNILELCLSSD-DSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL   79 (187)
T ss_pred             HHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence            5777888888888 8999999999988876221111     135799999999999999999999999998666554

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=88.07  E-value=1.7  Score=36.25  Aligned_cols=79  Identities=22%  Similarity=0.264  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHcCCChhhHHHHHhcCC-------hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChH-HHHHHHHcCC
Q 043676           61 QLQYEAAWVLINIASGTSENTNVVIDHGA-------VPIFVKLLSS-PSDDVREQAVWALGNVAGDSPR-CRDLVLSQGA  131 (446)
Q Consensus        61 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~-------i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~  131 (446)
                      .-|..|+.+|++++- .+.+.+.+...+-       +..|.+++.. .++-.|+.|+-.|.+++..+.. ++....+.+.
T Consensus       139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            468999999999997 5555555554443       3445555554 6788999999999999976654 4566778888


Q ss_pred             hHHHHHHhc
Q 043676          132 LIPLLAELN  140 (446)
Q Consensus       132 i~~l~~~l~  140 (446)
                      +..|+.++.
T Consensus       218 i~~Li~FiE  226 (257)
T PF12031_consen  218 ISHLIAFIE  226 (257)
T ss_pred             HHHHHHHHH
Confidence            999999993

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=87.60  E-value=26  Score=33.30  Aligned_cols=157  Identities=15%  Similarity=0.126  Sum_probs=114.8

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcccc---chhHHHHHHHHHHHhhcCCCCCCh
Q 043676           91 PIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHA---KLSMLRNATRTLSNFCRGKPEPPF  167 (446)
Q Consensus        91 ~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~---~~~~~~~a~~~L~~l~~~~~~~~~  167 (446)
                      ..+...+.+++..-+..++..+..++.+.. ....+....++..|.+++.+..   ..++....+.+++.+..+.-....
T Consensus        86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d~~-fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~  164 (713)
T KOG2999|consen   86 KRIMEILTEGNNISKMEALKELDSLSLDPT-FAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE  164 (713)
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHhhccccHH-HHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence            567777888888888788888888885544 5566667778889999885433   457778888888888777532222


Q ss_pred             hhhhhhHHHHHHhhc--CCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCC
Q 043676          168 DQVRPALPALAQLVH--SNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGD  245 (446)
Q Consensus       168 ~~~~~~~~~l~~ll~--~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~  245 (446)
                      .....++.....+..  ..+..+...++..+-++...++...+.+.+.--+..++..++..+..+...|...+..+....
T Consensus       165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~a  244 (713)
T KOG2999|consen  165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRKA  244 (713)
T ss_pred             ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhhC
Confidence            222344444444443  336778889999999999888877777888888999999999999888888888888887655


Q ss_pred             chh
Q 043676          246 DFQ  248 (446)
Q Consensus       246 ~~~  248 (446)
                      ++.
T Consensus       245 ~~~  247 (713)
T KOG2999|consen  245 PDD  247 (713)
T ss_pred             ChH
Confidence            543

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.60  E-value=40  Score=37.40  Aligned_cols=213  Identities=16%  Similarity=0.097  Sum_probs=107.8

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChHHHHH
Q 043676           47 VPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSS-PSDDVREQAVWALGNVAGDSPRCRDL  125 (446)
Q Consensus        47 ~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~~~~~  125 (446)
                      ...++..+..++ +..+..+..+++.++...++.  .++ .+..+..++-+.+ .++..|..-..+++.+-.........
T Consensus       878 ~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~~--~f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~  953 (2067)
T KOG1822|consen  878 LTLIVNSLINPN-PKLRCAAAEALARLAQVVGSA--PFV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG  953 (2067)
T ss_pred             HHHHhhhhccCC-hHHHHHHHHHHHHHHHhcccc--chH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence            444555566667 788888888888877622111  111 1234555555555 45555555555555554221111111


Q ss_pred             HHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhcCC---CHhHHHH----------
Q 043676          126 VLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLVHSN---DEDVLTY----------  191 (446)
Q Consensus       126 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~---~~~v~~~----------  191 (446)
                      -.....+..+..+..++.++.++..++.++..+.... |.. .......+..+..++.+.   ..++...          
T Consensus       954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~-~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~ 1032 (2067)
T KOG1822|consen  954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMF-RVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDD 1032 (2067)
T ss_pred             hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCcee-hhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchh
Confidence            1112235566777766677799999999999988776 333 333334444444444322   2222222          


Q ss_pred             ---HHHHHHHhccCCcH--HHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhc
Q 043676          192 ---ACWSLSYLADGTND--KIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLV  266 (446)
Q Consensus       192 ---~~~~l~~l~~~~~~--~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~  266 (446)
                         ...+++.=...+..  ... .+....+-...-++.++++-++..+..++.++--..+.....   .-++..+..++.
T Consensus      1033 ~~alittlgpeL~~N~~~d~t~-~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~---~~lV~~L~~~l~ 1108 (2067)
T KOG1822|consen 1033 EDALITTLGPELGPNGDKDSTS-TLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNL---DSLVLQLCSLLS 1108 (2067)
T ss_pred             HHHHHHhcccccCCCCcccchh-HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccH---HHHHHHHHHHhc
Confidence               22222222222221  222 222223333344456678888899999998886555432211   123444555554


Q ss_pred             cC
Q 043676          267 HN  268 (446)
Q Consensus       267 ~~  268 (446)
                      ++
T Consensus      1109 s~ 1110 (2067)
T KOG1822|consen 1109 SS 1110 (2067)
T ss_pred             ch
Confidence            44

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=87.42  E-value=23  Score=32.34  Aligned_cols=93  Identities=15%  Similarity=0.088  Sum_probs=58.6

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhC----------CCCHHHHHHHHHHHHHhh
Q 043676           47 VPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLS----------SPSDDVREQAVWALGNVA  116 (446)
Q Consensus        47 ~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~----------~~~~~v~~~a~~~l~~l~  116 (446)
                      -..++..|..+..+.-+...+..+.-++. +...-..+.....++.|+.+-+          .++..+.-.++.+|+|+.
T Consensus        47 ~e~i~~Vle~~~p~t~~v~~LetvrILSR-dk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlv  125 (532)
T KOG4464|consen   47 GERIFEVLENGEPLTHRVVCLETVRILSR-DKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLV  125 (532)
T ss_pred             HHHHHHHHhcCCCchhhhhHHHHHHHHhc-cccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHH
Confidence            34455666655534455556666666665 3332222222222344444321          134578889999999999


Q ss_pred             CCChHHHHHHHHcCChHHHHHHhc
Q 043676          117 GDSPRCRDLVLSQGALIPLLAELN  140 (446)
Q Consensus       117 ~~~~~~~~~~~~~~~i~~l~~~l~  140 (446)
                      ..++.+++...+......+++.+.
T Consensus       126 f~Sq~~q~~~~~~~~~~~ll~~v~  149 (532)
T KOG4464|consen  126 FHSQRAQDLFLENPLTGKLLQRVL  149 (532)
T ss_pred             hccHHHHHHHHhhhhHHHHHHHHH
Confidence            999999999999888888887764

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=87.15  E-value=33  Score=33.90  Aligned_cols=136  Identities=15%  Similarity=0.144  Sum_probs=82.1

Q ss_pred             hhhHHHHHHhhcCC----CHhHHHHHHHHHHHhcc----CCcHHHHHHHHhCcHHHHHHhcC----CCCccchhHHHHHH
Q 043676          171 RPALPALAQLVHSN----DEDVLTYACWSLSYLAD----GTNDKIQAVIEAGVCPRLVELLG----HPSPSVLTPALRTV  238 (446)
Q Consensus       171 ~~~~~~l~~ll~~~----~~~v~~~~~~~l~~l~~----~~~~~~~~~~~~~~~~~l~~ll~----~~~~~~~~~a~~~l  238 (446)
                      ...+..+..++.++    .+.++..++-+++.+..    ..+.... .....+++.+...+.    ..+...+..++.+|
T Consensus       392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaL  470 (574)
T smart00638      392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPD-FVLEELLKYLHELLQQAVSKGDEEEIQLYLKAL  470 (574)
T ss_pred             HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCCh-hhHHHHHHHHHHHHHHHHhcCCchheeeHHHhh
Confidence            34566677777643    56777777777777663    2211001 111244555555443    34555667788999


Q ss_pred             HHhhcCCchhhHHHHhcCChHHHHHHhc--cCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc--CCcc
Q 043676          239 GNIVTGDDFQTQCIINHGAVPYLLDMLV--HNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQN--AEFD  314 (446)
Q Consensus       239 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~  314 (446)
                      +|+....           .+..+...+.  ...+..+|..|+++|..++...+..        +-+.++.++.+  .+++
T Consensus       471 GN~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~E  531 (574)
T smart00638      471 GNAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPE  531 (574)
T ss_pred             hccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChH
Confidence            9887622           2233444443  2225789999999999887644443        44556666665  3678


Q ss_pred             hHHHHHHHHHHh
Q 043676          315 TKKEAAWAISNA  326 (446)
Q Consensus       315 v~~~a~~aL~~l  326 (446)
                      +|..|+.+|...
T Consensus       532 vRiaA~~~lm~t  543 (574)
T smart00638      532 VRMAAVLVLMET  543 (574)
T ss_pred             HHHHHHHHHHhc
Confidence            998888777655

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=87.09  E-value=10  Score=27.92  Aligned_cols=71  Identities=15%  Similarity=0.191  Sum_probs=51.8

Q ss_pred             ChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHh-----h-cCCCHHHHHH
Q 043676          343 CVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENL-----Q-SHDNNEIHEK  416 (446)
Q Consensus       343 ~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l-----~-~~~~~~v~~~  416 (446)
                      ++..|..-+.+.++.++..++..|..+++.+...            |...+.....+..+..+     . ...+..|+++
T Consensus        38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~------------f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k  105 (115)
T cd00197          38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGER------------FHQEVASNDFAVELLKFDKSKLLGDDVSTNVREK  105 (115)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHH------------HHHHHHHhHHHHHHHHhhccccccCCCChHHHHH
Confidence            3555666677789999999999999999988775            56666666655555332     2 2346789999


Q ss_pred             HHHHHHHhc
Q 043676          417 SVKIFKTYW  425 (446)
Q Consensus       417 a~~~l~~~~  425 (446)
                      +..+++.+.
T Consensus       106 ~~~l~~~w~  114 (115)
T cd00197         106 AIELVQLWA  114 (115)
T ss_pred             HHHHHHHHh
Confidence            999888654

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=87.06  E-value=7.5  Score=27.55  Aligned_cols=93  Identities=14%  Similarity=0.168  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcHHHHH-hcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHH
Q 043676           17 SLQLEATTLSRKLLSFDRNPPIEKVI-QSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVK   95 (446)
Q Consensus        17 ~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~   95 (446)
                      ++|..|+..+..=.... --....+. ....+..|++.++.+. .-.+..++..+..++. ++.....+.+-|+.+.|.+
T Consensus         2 EIR~RAL~~I~~Kl~~~-Li~~~dl~~~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~k   78 (98)
T PF14726_consen    2 EIRVRALESIEFKLEHG-LISEEDLVKERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSK   78 (98)
T ss_pred             hHHHHHHHHHHHHHHhc-cccHHHHccHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHH
Confidence            45666666554322221 22222233 4567888889999888 5688999999999988 7888888888999888777


Q ss_pred             hhCCCCHHHHHHHHHHH
Q 043676           96 LLSSPSDDVREQAVWAL  112 (446)
Q Consensus        96 ~L~~~~~~v~~~a~~~l  112 (446)
                      +=...++..+...-.++
T Consensus        79 lr~~~~~~~~~~id~il   95 (98)
T PF14726_consen   79 LRPNVEPNLQAEIDEIL   95 (98)
T ss_pred             HHhcCCHHHHHHHHHHH
Confidence            76666666665544433

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=86.61  E-value=10  Score=28.20  Aligned_cols=72  Identities=11%  Similarity=0.123  Sum_probs=51.7

Q ss_pred             ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHc-CChHHHHhcccCC--------CHHHHHHHHHHHHHHH
Q 043676          300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVRE-GCVKPLCDLLLCS--------DPEIVTVCLIGLENIL  370 (446)
Q Consensus       300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~-~~i~~L~~ll~~~--------~~~~~~~~~~~l~~l~  370 (446)
                      ++..|.+=|++.++.|+.+++..|..++..+.++....+... ..|..+.++-...        ...|+..|-+++.-++
T Consensus        39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if  118 (122)
T cd03572          39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF  118 (122)
T ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence            566788888888999999999999999999887777665543 2344444443322        2357888888777766


Q ss_pred             H
Q 043676          371 K  371 (446)
Q Consensus       371 ~  371 (446)
                      .
T Consensus       119 ~  119 (122)
T cd03572         119 S  119 (122)
T ss_pred             c
Confidence            4

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein

Probab=85.87  E-value=14  Score=28.41  Aligned_cols=74  Identities=9%  Similarity=0.042  Sum_probs=58.0

Q ss_pred             ChHHHHHHHh-cCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHH-HHhcccC---CCHHHHHHHHHHHHHHHHhh
Q 043676          300 LIRPIVNLLQ-NAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKP-LCDLLLC---SDPEIVTVCLIGLENILKVG  373 (446)
Q Consensus       300 ~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~-L~~ll~~---~~~~~~~~~~~~l~~l~~~~  373 (446)
                      ++..+.+-+. +.++.+...|+..|-.+..++.......+...+++.. |..++..   .+..|+..++..+.......
T Consensus        39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f  117 (141)
T cd03565          39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF  117 (141)
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence            4455555555 4588899999999999999988888888888889987 8999863   34589999999988876543

The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=85.67  E-value=32  Score=32.39  Aligned_cols=274  Identities=13%  Similarity=0.139  Sum_probs=120.6

Q ss_pred             CHHHHHHhhcCC---CChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhC----
Q 043676           46 VVPRFVEFLMRE---DYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSS-PSDDVREQAVWALGNVAG----  117 (446)
Q Consensus        46 ~~~~L~~ll~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~-~~~~v~~~a~~~l~~l~~----  117 (446)
                      ++..|..++..+   .++-+.....+++..+-..-......+++. .+..+....++ .+|..-.....+++.+..    
T Consensus        27 ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~  105 (435)
T PF03378_consen   27 LLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCE  105 (435)
T ss_dssp             HHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-G
T ss_pred             HHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccC
Confidence            455556666542   224455555555555444333333333322 33444444455 346655555555555542    


Q ss_pred             CChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC-CCChhhhhhhHHHHHHh-hcCCCHhHHHHHHHH
Q 043676          118 DSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKP-EPPFDQVRPALPALAQL-VHSNDEDVLTYACWS  195 (446)
Q Consensus       118 ~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~l~~l-l~~~~~~v~~~~~~~  195 (446)
                      .++... .-++...++.+...| ...-.+..-.+...|+.+.+..+ ..........+|.+..- +-.....+ ....+.
T Consensus       106 ~~~~~v-~~~E~~L~P~f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrL  182 (435)
T PF03378_consen  106 ADPEAV-SQFEEALFPPFQEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRL  182 (435)
T ss_dssp             GGHH----HHHHHHHHHHHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHH
T ss_pred             CChhHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHH
Confidence            223211 123445677888888 44445777778888887776654 11112223333333211 11111111 222223


Q ss_pred             HHHhccCCcHHHHHHHHh----CcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhh-HHHHhcCChHHHHHHhccCch
Q 043676          196 LSYLADGTNDKIQAVIEA----GVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQT-QCIINHGAVPYLLDMLVHNHE  270 (446)
Q Consensus       196 l~~l~~~~~~~~~~~~~~----~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~  270 (446)
                      |.......+...   ...    +++..+-+++.+...  -..+...|..+..+.+... +..+ ..++..++.-|++...
T Consensus       183 L~a~i~k~~~~i---~~~~~l~~iLgvFQkLi~sk~~--D~~gF~LL~~iv~~~p~~~l~~yl-~~I~~lll~RLq~skT  256 (435)
T PF03378_consen  183 LQAYIKKDPSFI---VANNQLEPILGVFQKLIASKAN--DHYGFDLLESIVENLPPEALEPYL-KQIFTLLLTRLQSSKT  256 (435)
T ss_dssp             HHHHHHHHGGG-------S-CHHHHHHHHHHHT-TTC--HHHHHHHHHHHHHHS-HHHHGGGH-HHHHHHHHHHHHHC--
T ss_pred             HHHHHHhCchhh---cchhhHHHHHHHHHHHHCCCCc--chHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHhhCCc
Confidence            333222222111   111    333444455555432  3457777777766554321 1111 2245556666665535


Q ss_pred             HHHHHHHHHHHHHHhc-CCHHHHHHHHH---cCChHHHHHH-----Hhc-CCcchHHHHHHHHHHhccC
Q 043676          271 EIIKKEISWIISNITA-GNREQIQAVID---AGLIRPIVNL-----LQN-AEFDTKKEAAWAISNATSG  329 (446)
Q Consensus       271 ~~v~~~a~~~l~~l~~-~~~~~~~~~~~---~~~i~~L~~l-----l~~-~~~~v~~~a~~aL~~l~~~  329 (446)
                      .+.+..-+..++.++. .+++..-..++   .|++..+..-     ++. ..+.-|+.++-+++++...
T Consensus       257 ~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~e  325 (435)
T PF03378_consen  257 EKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCE  325 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhc
Confidence            5666555555565543 34444444443   4544444431     111 1233466666677776543

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=84.93  E-value=29  Score=31.71  Aligned_cols=153  Identities=15%  Similarity=0.026  Sum_probs=87.2

Q ss_pred             HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc----------CCCHhHHHHHHHHHHHhccCC
Q 043676          134 PLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH----------SNDEDVLTYACWSLSYLADGT  203 (446)
Q Consensus       134 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~----------~~~~~v~~~~~~~l~~l~~~~  203 (446)
                      .++..+.+..-...+..++.++.-|+++...-.-.......+.|..+.+          ..+..+...++.||+|+..++
T Consensus        49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~S  128 (532)
T KOG4464|consen   49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHS  128 (532)
T ss_pred             HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhcc
Confidence            4555553333345555666777777776643333334444444444432          235688999999999999998


Q ss_pred             cHHHHHHHHhCcHHHHHHhcCCC----C-ccchhHHHHHHHHhhcCCchhh-HHHHhcCChHHHHHHhccCc--------
Q 043676          204 NDKIQAVIEAGVCPRLVELLGHP----S-PSVLTPALRTVGNIVTGDDFQT-QCIINHGAVPYLLDMLVHNH--------  269 (446)
Q Consensus       204 ~~~~~~~~~~~~~~~l~~ll~~~----~-~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~~~~~l~~~l~~~~--------  269 (446)
                      +.......+......+.+.+...    - ..+...-++.|.-+..-....+ +.+.+.++++.+-+++.+.-        
T Consensus       129 q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~  208 (532)
T KOG4464|consen  129 QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINV  208 (532)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCC
Confidence            87777777777666666655431    1 1222223333333333233333 33447778888888875421        


Q ss_pred             ------hHHHHHHHHHHHHHHhc
Q 043676          270 ------EEIIKKEISWIISNITA  286 (446)
Q Consensus       270 ------~~~v~~~a~~~l~~l~~  286 (446)
                            +....-+++.++.|++.
T Consensus       209 ~~l~pqe~n~a~EaLK~~FNvt~  231 (532)
T KOG4464|consen  209 PPLNPQETNRACEALKVFFNVTC  231 (532)
T ss_pred             CCCCHHHHHHHHHHHHHHhheee
Confidence                  12334456777777765

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.79  E-value=46  Score=33.40  Aligned_cols=311  Identities=16%  Similarity=0.145  Sum_probs=160.2

Q ss_pred             HHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCC--ChhhHHHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHh
Q 043676           39 EKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASG--TSENTNVVIDHGAVPIFVKLLSSP-SDDVREQAVWALGNV  115 (446)
Q Consensus        39 ~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~~L~~~-~~~v~~~a~~~l~~l  115 (446)
                      +.......+|.+-  ...++.--+|+..+|.++.-.+.  ..+.+..+     -..+++++++. |.-++-.++.++.-.
T Consensus       482 ~~Wl~~~llpEl~--~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~-----Y~a~lnLL~d~~D~vV~Ltt~~tlkl~  554 (978)
T KOG1993|consen  482 DKWLQEALLPELA--NDHGNSRIIRRRVAWILGQWVSVQQKLELKPLL-----YCAFLNLLQDQNDLVVRLTTARTLKLV  554 (978)
T ss_pred             HHHHHHhhCHHhh--hcccchhHHHHHHHHHHhhhhheechHhHHHHH-----HHHHHHhcCccccceeehHHHHHHHHh
Confidence            3344445566554  23344345789999999998761  12223222     36788889886 667788888888877


Q ss_pred             hCCChHHHHHHHH--cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc------CCCHh
Q 043676          116 AGDSPRCRDLVLS--QGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH------SNDED  187 (446)
Q Consensus       116 ~~~~~~~~~~~~~--~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~------~~~~~  187 (446)
                      ..+-.-..+.+..  ......+.+++..-...+.+..++.+++.+.......    .......+++++.      .+.+-
T Consensus       555 vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~----I~P~~~~ivq~lp~LWe~s~~e~l  630 (978)
T KOG1993|consen  555 VDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEH----IAPYASTIVQYLPLLWEESEEEPL  630 (978)
T ss_pred             hhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHhhhccCcH
Confidence            7432211112111  2233344555544455677778888888876653111    1122222333322      34567


Q ss_pred             HHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCcc---chhHHHHHHHHhhcCCchhhHHHHhcCChHHHHH
Q 043676          188 VLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH-PSPS---VLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLD  263 (446)
Q Consensus       188 v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~---~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~  263 (446)
                      ++...+.++.++...-......+.  .++-.++++-.+ .+++   ..+.+...-.....+.+.....+.  +++|.+..
T Consensus       631 Lr~alL~~L~~lV~alg~qS~~~~--~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll--~L~p~l~~  706 (978)
T KOG1993|consen  631 LRCALLATLRNLVNALGAQSFEFY--PFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELL--LLFPHLLY  706 (978)
T ss_pred             HHHHHHHHHHHHHHHhccCCccch--HHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHH--HHHHHHHH
Confidence            788888888888754222221111  233334444333 2222   222233222222222333333333  36777887


Q ss_pred             HhccCchHHHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcC
Q 043676          264 MLVHNHEEIIKKEISWIISNITA-GNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREG  342 (446)
Q Consensus       264 ~l~~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~  342 (446)
                      ++... ... ...+..++....- .++.... -...|+.+.+.+++.+-..+-....+..+..+...  ......+...+
T Consensus       707 ~iE~s-te~-L~t~l~Ii~sYilLd~~~fl~-~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t--~~il~~~~~~~  781 (978)
T KOG1993|consen  707 IIEQS-TEN-LPTVLMIISSYILLDNTVFLN-DYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKT--NPILGSLLFSP  781 (978)
T ss_pred             HHHhh-hhh-HHHHHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--hHHHHhhhcch
Confidence            77655 333 3334444444332 3333222 22347888888888766666666666677666653  22344444455


Q ss_pred             ChHHHHhcc--cCCCHHHHHHHHHHHHHH
Q 043676          343 CVKPLCDLL--LCSDPEIVTVCLIGLENI  369 (446)
Q Consensus       343 ~i~~L~~ll--~~~~~~~~~~~~~~l~~l  369 (446)
                      +++.+..-+  +.+.|.+...-+.++.++
T Consensus       782 ~L~~lf~~I~~~~~yP~~~~~yl~vvaRi  810 (978)
T KOG1993|consen  782 LLSRLFLSIAENDKYPYVMGEYLLVVARI  810 (978)
T ss_pred             hhHHHHHHHHhCCCCchhHHHHHHHHHHH
Confidence            566555433  334444444444444444

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=84.52  E-value=12  Score=35.23  Aligned_cols=102  Identities=11%  Similarity=0.138  Sum_probs=56.6

Q ss_pred             chhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCC-CHhHHHHHHHHHHHhccC----CcHHHHHHHHhCcHHH
Q 043676          144 KLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSN-DEDVLTYACWSLSYLADG----TNDKIQAVIEAGVCPR  218 (446)
Q Consensus       144 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~~~~~l~~l~~~----~~~~~~~~~~~~~~~~  218 (446)
                      ++-+.+...+++..+-..-..........+...+....+++ ++..-.+...+++.+.+.    +++.. .-++..++|.
T Consensus        43 NeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v-~~~E~~L~P~  121 (435)
T PF03378_consen   43 NEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAV-SQFEEALFPP  121 (435)
T ss_dssp             -HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH----HHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHH-HHHHHHHHHH
Confidence            45566666666555544321111112223333333333444 677777777776666533    22222 2455688899


Q ss_pred             HHHhcCCCCccchhHHHHHHHHhhcCCc
Q 043676          219 LVELLGHPSPSVLTPALRTVGNIVTGDD  246 (446)
Q Consensus       219 l~~ll~~~~~~~~~~a~~~l~~l~~~~~  246 (446)
                      +..+|+.+-.+....+..+++.+....+
T Consensus       122 f~~ILq~dV~EF~PYvfQIla~Lle~~~  149 (435)
T PF03378_consen  122 FQEILQQDVQEFIPYVFQILAQLLELRP  149 (435)
T ss_dssp             HHHHHHTT-TTTHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999988878888889999888875444

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=84.49  E-value=45  Score=38.48  Aligned_cols=251  Identities=14%  Similarity=0.082  Sum_probs=139.7

Q ss_pred             HHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC----CCh--hhhhhhHHHHH
Q 043676          105 REQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPE----PPF--DQVRPALPALA  178 (446)
Q Consensus       105 ~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~----~~~--~~~~~~~~~l~  178 (446)
                      ...|.+++.++-........      .+..++.......+.+++..+..++..+......    ...  ......+..+.
T Consensus       461 ~~~a~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll  534 (2341)
T KOG0891|consen  461 IQLAFKTLGGFKFSGYSLTL------FVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALL  534 (2341)
T ss_pred             HHHHHHHHhhhhhhhhhHHH------HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHH
Confidence            44566666666532211111      1233333333566788888886666655544322    111  11334444444


Q ss_pred             Hhhc-CCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCC
Q 043676          179 QLVH-SNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGA  257 (446)
Q Consensus       179 ~ll~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~  257 (446)
                      .+-. .++++++......+.      ........+.+.+..+...+....-..+..+...+++++..++......+....
T Consensus       535 ~~aia~~~~~i~~~v~~~l~------~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~  608 (2341)
T KOG0891|consen  535 TVAIADTDPDIRIRVLSSLN------ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTL  608 (2341)
T ss_pred             HHhccCCCcchhhhHHhhhc------cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHH
Confidence            3332 457777777766665      122233445566666777777778888999999999999988866555554444


Q ss_pred             hHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHH
Q 043676          258 VPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKH  337 (446)
Q Consensus       258 ~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~  337 (446)
                      +...-.+..+. -..++..++.-+..+....+..+...+. ..+..++..+.+.+..+...+..++..++..+..+. ..
T Consensus       609 l~~~s~l~~sg-~~r~~~~~a~~~~~~i~~~~~~i~~~v~-~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~-~~  685 (2341)
T KOG0891|consen  609 LELLTELEFSG-MARTKEESAKLLCELIISSPVLISPYVG-PILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEM-VK  685 (2341)
T ss_pred             HHHhchhhhcc-hHHhHHHHHHHhhHHHHHHHHHHHhhcC-chHHHHHHHHhccchhhHHHHHHHHHHHHHhccchh-hh
Confidence            44444444444 4444455544444444444444443333 455667777777888888889999999887654222 11


Q ss_pred             HHHcCChHHHHhcccC-CCHHHHHHHHHHHHHHHH
Q 043676          338 LVREGCVKPLCDLLLC-SDPEIVTVCLIGLENILK  371 (446)
Q Consensus       338 l~~~~~i~~L~~ll~~-~~~~~~~~~~~~l~~l~~  371 (446)
                      ... ..++.+.+.+.+ .+..-+..+++.+.++..
T Consensus       686 ~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s  719 (2341)
T KOG0891|consen  686 WVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLES  719 (2341)
T ss_pred             ccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhc
Confidence            122 234444444432 334445556666666554

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=84.10  E-value=4.3  Score=35.33  Aligned_cols=109  Identities=16%  Similarity=0.203  Sum_probs=68.5

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcC--CHHHHHHhhcCC----CChHHHHHHHHHHHHHcCCChhhH-HHHHh
Q 043676           14 DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSG--VVPRFVEFLMRE----DYPQLQYEAAWVLINIASGTSENT-NVVID   86 (446)
Q Consensus        14 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~--~~~~L~~ll~~~----~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~   86 (446)
                      ..+..++.+++.++|+...  ...+..+....  .+...+..+...    + ..++..++..+.|++......+ ..-..
T Consensus       122 ~~~~~~ml~lR~l~NlF~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-kn~~~A~ATl~~Nlsv~~~~~~~~~~~~  198 (268)
T PF08324_consen  122 SPPANQMLALRLLANLFSH--PPGRQLLLSHFDSSILELLSSLLSSLLDSN-KNVRIALATLLLNLSVLLHKNRSDEEWQ  198 (268)
T ss_dssp             SSHHHHHHHHHHHHHHTTS--CCCHHHHHCTHHTCHHHHCHCCCTTS-HHH-HHHHHHHHHHHHHHHHHHHHCTS-CCHH
T ss_pred             CcHHHHHHHHHHHHHhhCC--CccHHHHHhcccchHHHHHHHHhhcccccc-HHHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence            5688899999999998876  45555555432  233333333333    4 7899999999999975111111 00001


Q ss_pred             cCChHHHHH-hhCC-CCHHHHHHHHHHHHHhhCCChHHHHH
Q 043676           87 HGAVPIFVK-LLSS-PSDDVREQAVWALGNVAGDSPRCRDL  125 (446)
Q Consensus        87 ~~~i~~L~~-~L~~-~~~~v~~~a~~~l~~l~~~~~~~~~~  125 (446)
                      ...+..+.+ +... .+++....++.+++++....+.....
T Consensus       199 ~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~  239 (268)
T PF08324_consen  199 SELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQL  239 (268)
T ss_dssp             HHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred             HHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHH
Confidence            123455666 3333 68999999999999999766654444

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []

Probab=83.98  E-value=31  Score=30.77  Aligned_cols=168  Identities=11%  Similarity=0.088  Sum_probs=82.6

Q ss_pred             CHHHHHHhhcCCC---ChHHHHHHHHHHHHHcCCChhhHHHHHhcC-----------ChHHHHHhhCC------CCHHHH
Q 043676           46 VVPRFVEFLMRED---YPQLQYEAAWVLINIASGTSENTNVVIDHG-----------AVPIFVKLLSS------PSDDVR  105 (446)
Q Consensus        46 ~~~~L~~ll~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-----------~i~~L~~~L~~------~~~~v~  105 (446)
                      ++..|+.++-..+   .-++|..|+.|+.....++++.+..+++.-           ....++..|-+      .++--.
T Consensus        35 vi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~  114 (312)
T PF04869_consen   35 VIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRC  114 (312)
T ss_dssp             HHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHH
T ss_pred             HHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHH
Confidence            3444444443222   368999999999999998899888776431           01123332221      122222


Q ss_pred             HHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc---
Q 043676          106 EQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH---  182 (446)
Q Consensus       106 ~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~---  182 (446)
                      -.|+.++.++..+++..++...+                         + ........    ......++.+..+|.   
T Consensus       115 wfAa~il~hll~dn~~~Ke~al~-------------------------V-~~~~~~~g----e~~vtliq~v~~lL~~~l  164 (312)
T PF04869_consen  115 WFAAVILMHLLRDNPEAKEQALR-------------------------V-TEGDESSG----EEPVTLIQTVSELLIASL  164 (312)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHTT----------------------------EE--STT----S--EEHHHHHHHHTTT--
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHc-------------------------c-cCCCCCCC----CCcccHHHHHHHHHHhhh
Confidence            23444444444444444333322                         1 00000001    111123333433332   


Q ss_pred             --CCCHhHHHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhcCC---CCccchhHHHHHHHHhhc
Q 043676          183 --SNDEDVLTYACWSLSYLADGTNDKIQAVIEA-GVCPRLVELLGH---PSPSVLTPALRTVGNIVT  243 (446)
Q Consensus       183 --~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~l~~ll~~---~~~~~~~~a~~~l~~l~~  243 (446)
                        +.++.++..-+..|..-...++.....+... ..++.|+.....   .+.-++-.++..|+-.-.
T Consensus       165 ~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicye  231 (312)
T PF04869_consen  165 RRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYE  231 (312)
T ss_dssp             --T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred             hcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence              3467777777777777667777777777765 478888887543   233355556666655543

p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.

>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]

Probab=83.51  E-value=13  Score=33.37  Aligned_cols=78  Identities=8%  Similarity=0.026  Sum_probs=64.2

Q ss_pred             CChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhccc-CCCHHHHHHHHHHHHHHHHhhhhh
Q 043676          299 GLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLL-CSDPEIVTVCLIGLENILKVGEAE  376 (446)
Q Consensus       299 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~  376 (446)
                      .++..+.+-+.+.++.|...|+..+..++.++....+..+....+...|..++. ...+.|..+.-..+..+.+...++
T Consensus        45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~D  123 (462)
T KOG2199|consen   45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKD  123 (462)
T ss_pred             HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccC
Confidence            367788888999999999999999999999888888888888888888888888 567888888777777776644443

>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []

Probab=82.28  E-value=38  Score=34.58  Aligned_cols=141  Identities=18%  Similarity=0.160  Sum_probs=85.9

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHH-
Q 043676            7 LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVI-   85 (446)
Q Consensus         7 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-   85 (446)
                      +.+.+.++++..-...+.++..+..-..-+...   ...-++.-..-.+..- ..+......+|..++.-+++....+. 
T Consensus       446 l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~-~~~~~~~~~il~rls~~~~~~L~~l~~  521 (727)
T PF12726_consen  446 LLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSL-GQITDLISQILERLSDFDPSHLKELLS  521 (727)
T ss_pred             HHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHHHHHc
Confidence            344455667766666666666655443211111   1111222222223333 46677788899999987777777666 


Q ss_pred             hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 043676           86 DHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK  162 (446)
Q Consensus        86 ~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  162 (446)
                      +.+....+..++-+++.++.+.|..++........  |        .+.+-.++ +..-........+.|..+....
T Consensus       522 d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~--R--------~e~i~~ll-~~~~~~tL~ai~~~l~~~~~~~  587 (727)
T PF12726_consen  522 DPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDG--R--------LEAIQALL-QSNFSPTLSAINWSLRQLTKLK  587 (727)
T ss_pred             CcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCc--H--------HHHHHHHH-HHhHHHHHHHHHHHHHHHHhhh
Confidence            46889999999999999999999999999884322  1        22333334 2222345566667777766554

The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=82.12  E-value=19  Score=37.92  Aligned_cols=235  Identities=17%  Similarity=0.169  Sum_probs=130.3

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHH--------hhcCCCChHHHHHHHHHHHHHcC
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVE--------FLMREDYPQLQYEAAWVLINIAS   75 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~--------ll~~~~~~~~~~~a~~~L~~l~~   75 (446)
                      +..|++.+-++...+|.-++..++.++......-....++.-.+..+.-        .....-..-+++.++++|+.+..
T Consensus        79 ~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~  158 (1549)
T KOG0392|consen   79 LEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLK  158 (1549)
T ss_pred             HHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHH
Confidence            4567777788889999999999998877542222222222221211111        11111123688999999998887


Q ss_pred             CChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHH--HcCChHHHHHHhccccchhHHHHHHH
Q 043676           76 GTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVL--SQGALIPLLAELNEHAKLSMLRNATR  153 (446)
Q Consensus        76 ~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~~~i~~l~~~l~~~~~~~~~~~a~~  153 (446)
                      +-.+...    ...++.+.+++..++.+++...+..+.....   ..++.+.  -..+++..+..+ .+.+..++..+..
T Consensus       159 ~~~~s~~----~~~~~il~q~~~q~~w~ir~Ggll~iky~~a---ir~d~l~~~~~~vl~~~i~~L-~ds~ddv~~~aa~  230 (1549)
T KOG0392|consen  159 HMDESLI----KETLDILLQMLRQPNWEIRHGGLLGIKYNVA---IRQDLLFQLLNLVLDFVIEGL-EDSDDDVRSVAAQ  230 (1549)
T ss_pred             hhhhHhh----HHHHHHHHHHHcCcchhheechHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhh-hhcchHHHHHHHH
Confidence            3222111    1246788888888877777665555543331   1111111  011334445555 5667788888888


Q ss_pred             HHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCH--hHHHHHHHHHHHhccCCcH---HHHHHHHhCcHHHHHHhcCCCCc
Q 043676          154 TLSNFCRGKPEPPFDQVRPALPALAQLVHSNDE--DVLTYACWSLSYLADGTND---KIQAVIEAGVCPRLVELLGHPSP  228 (446)
Q Consensus       154 ~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~--~v~~~~~~~l~~l~~~~~~---~~~~~~~~~~~~~l~~ll~~~~~  228 (446)
                      .+.-...............++..+...+..-+.  .-.......+..++.....   ..+.-.+.|+++.+...+.+.=.
T Consensus       231 ~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i~  310 (1549)
T KOG0392|consen  231 FLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTIS  310 (1549)
T ss_pred             HhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHHH
Confidence            887766655444444455566666655543322  0111111222223322210   00111224888999999988888


Q ss_pred             cchhHHHHHHHHhhcCCc
Q 043676          229 SVLTPALRTVGNIVTGDD  246 (446)
Q Consensus       229 ~~~~~a~~~l~~l~~~~~  246 (446)
                      .++..++..+..+.+..+
T Consensus       311 sv~~a~l~~l~~lle~~~  328 (1549)
T KOG0392|consen  311 SVRRAALETLAMLLEADD  328 (1549)
T ss_pred             HHHHHHHHHHHHHHhcCC
Confidence            888899998888876443

>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.82  E-value=56  Score=32.17  Aligned_cols=290  Identities=11%  Similarity=0.123  Sum_probs=144.4

Q ss_pred             hHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676            4 FPALVAGVW-SDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN   82 (446)
Q Consensus         4 i~~l~~~l~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~   82 (446)
                      ++.+.+.|. +.|+..|.+|=..|+.+...  ++         .+..-.-++..++.|--+..|..+|.++.+... ...
T Consensus         7 Le~lCk~LY~s~D~~~R~~AE~~L~e~s~s--pe---------clskCqlll~~gs~pYs~mlAst~L~Klvs~~t-~lp   74 (1082)
T KOG1410|consen    7 LESLCKDLYESTDPTARHRAEKALAELSES--PE---------CLSKCQLLLERGSYPYSQMLASTCLMKLVSRKT-PLP   74 (1082)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHccC--HH---------HHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCC-CCc
Confidence            344555555 67899999999999886543  22         233333445555556778888888888876332 111


Q ss_pred             HHHhcCChHHHHHhhCCCCHH----HHHHHHHHHHHhhCCCh--HHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHH
Q 043676           83 VVIDHGAVPIFVKLLSSPSDD----VREQAVWALGNVAGDSP--RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLS  156 (446)
Q Consensus        83 ~~~~~~~i~~L~~~L~~~~~~----v~~~a~~~l~~l~~~~~--~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~  156 (446)
                      .....++-..++.++....|.    +...-+..++.+.....  ..++...-.+.+....+.+ +..+.+--.-+...|.
T Consensus        75 l~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl-~~~~ve~~~igv~iLs  153 (1082)
T KOG1410|consen   75 LEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFL-QMDNVEHCIIGVQILS  153 (1082)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHh-ccCchHHHHHHHHHHH
Confidence            111112335666666654333    34444444555542211  1111222233455666666 3333333334444555


Q ss_pred             HhhcCC-------CCC---Ch------hhhhhhHHHHHHhhcCC-----CH----hHHHHHHHHHHHhc-----------
Q 043676          157 NFCRGK-------PEP---PF------DQVRPALPALAQLVHSN-----DE----DVLTYACWSLSYLA-----------  200 (446)
Q Consensus       157 ~l~~~~-------~~~---~~------~~~~~~~~~l~~ll~~~-----~~----~v~~~~~~~l~~l~-----------  200 (446)
                      .+..+-       |..   ..      ...-.++..-..+++..     +.    .+...++..-.+..           
T Consensus       154 qLvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DE  233 (1082)
T KOG1410|consen  154 QLVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDE  233 (1082)
T ss_pred             HHHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhcccccccccccc
Confidence            544321       000   00      00012222222333211     11    22222222211111           


Q ss_pred             --------cCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcC-----CchhhHHHHhcCChHHHHHHhcc
Q 043676          201 --------DGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTG-----DDFQTQCIINHGAVPYLLDMLVH  267 (446)
Q Consensus       201 --------~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~-----~~~~~~~~~~~~~~~~l~~~l~~  267 (446)
                              ..+......+.+...++.+.++..+-.+...+.|+.|+..+++.     +...+...+ ..++.-...++.+
T Consensus       234 ssed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl-~~Lv~Gvk~il~n  312 (1082)
T KOG1410|consen  234 SSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYL-QHLVEGVKRILEN  312 (1082)
T ss_pred             ccccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHHhC
Confidence                    01122333466677888999999888888899999999999852     222222222 1234444555554


Q ss_pred             Cc---hHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 043676          268 NH---EEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQ  309 (446)
Q Consensus       268 ~~---~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~  309 (446)
                      +.   ++.--.+-|+.|+.+-  ...+...+++-..-+.+++++.
T Consensus       313 p~~LsD~~nyHeFCRllaRlk--tNYQL~ELv~v~~Y~e~irLiA  355 (1082)
T KOG1410|consen  313 PQGLSDPANYHEFCRLLARLK--TNYQLGELVKVECYPEVIRLIA  355 (1082)
T ss_pred             CcCCCCcchHHHHHHHHHHHH--hhhhhHhhhccCCcHHHHHHHH
Confidence            32   4455566777777772  3445555666555565665553

>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=81.02  E-value=1.1e+02  Score=36.75  Aligned_cols=184  Identities=9%  Similarity=0.018  Sum_probs=88.6

Q ss_pred             hhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHh--Cc--HHHHHHhcCCCCccchhHHHHHHHHhhc
Q 043676          168 DQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEA--GV--CPRLVELLGHPSPSVLTPALRTVGNIVT  243 (446)
Q Consensus       168 ~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~--~~--~~~l~~ll~~~~~~~~~~a~~~l~~l~~  243 (446)
                      ....+.+..++.-+.+++..+++.+..+|.+++.........+++.  .+  ++.+..-+.......+.-.+.++..+..
T Consensus      1122 ~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~ 1201 (3550)
T KOG0889|consen 1122 KSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLS 1201 (3550)
T ss_pred             HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHH
Confidence            3446777788888888899999999999999986653222222221  11  1111111111122222222333333322


Q ss_pred             CCch-------hhHHHHh---------cCChHHHHHHhccCc---hHHHHHHHHHHHHHHhcCCHHHH--HHHHHcCChH
Q 043676          244 GDDF-------QTQCIIN---------HGAVPYLLDMLVHNH---EEIIKKEISWIISNITAGNREQI--QAVIDAGLIR  302 (446)
Q Consensus       244 ~~~~-------~~~~~~~---------~~~~~~l~~~l~~~~---~~~v~~~a~~~l~~l~~~~~~~~--~~~~~~~~i~  302 (446)
                      ..+.       .......         ..... +.+......   ....|..+..+++......+-..  ..-...+++.
T Consensus      1202 l~p~~f~~~~~l~~l~~~~~~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~ 1280 (3550)
T KOG0889|consen 1202 LGPCLFDFTEELYRLKRFLIALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIA 1280 (3550)
T ss_pred             cCCcccCchHHHHHHHHHHHHhhhhhhhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHH
Confidence            2221       1110000         00000 111111110   12235556666655544222111  1112346788


Q ss_pred             HHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccC
Q 043676          303 PIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC  353 (446)
Q Consensus       303 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~  353 (446)
                      .+.+.+....+++...+..++...... +...-....+.+.-+.|..+-+.
T Consensus      1281 v~fk~l~~~~~Ei~~~~~~~l~~v~~~-~~~~~ke~lq~~lrplL~~l~d~ 1330 (3550)
T KOG0889|consen 1281 VFFKSLYKRSSELIEVALEGLRKVLAQ-DVKLPKELLQSHLRPLLMNLSDH 1330 (3550)
T ss_pred             HHHHHHcCChHHHHHHHHHHHHhhhhc-cccccHHHHHhhHHHHHHhhhHh
Confidence            888888888999999999999887654 23333333444433444444443

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=81.02  E-value=11  Score=27.60  Aligned_cols=70  Identities=7%  Similarity=-0.016  Sum_probs=52.9

Q ss_pred             ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhc-----c-cCCCHHHHHHHHHHHHHH
Q 043676          300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDL-----L-LCSDPEIVTVCLIGLENI  369 (446)
Q Consensus       300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~l-----l-~~~~~~~~~~~~~~l~~l  369 (446)
                      ++..+.+-+.+.++.++..|+..|-.+..++++.....+....++..++.+     . ...+..++..+...+..+
T Consensus        38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w  113 (115)
T cd00197          38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW  113 (115)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence            556666777788999999999999999999988888877776666666543     1 234678888888877654

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=80.89  E-value=22  Score=34.33  Aligned_cols=149  Identities=15%  Similarity=0.136  Sum_probs=86.5

Q ss_pred             CCHHHHHHhhc--C--------CCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHH
Q 043676           45 GVVPRFVEFLM--R--------EDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSP--SDDVREQAVWAL  112 (446)
Q Consensus        45 ~~~~~L~~ll~--~--------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~--~~~v~~~a~~~l  112 (446)
                      .++..|..+..  .        +-.+.+|...+..|+.-..    ..  -.....+......+.+.  +..++..++..+
T Consensus       272 ~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~----Aa--~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~  345 (501)
T PF13001_consen  272 DLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI----AA--TSFPNILQIVFDGLYSDNTNSKLKSLALQFI  345 (501)
T ss_pred             HHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH----HH--hCCccHHHHHhccccCCccccccchhcchhh
Confidence            45666666665  2        1226677766666654321    00  01123344455555555  567777777777


Q ss_pred             ---HHhhCCChH-----HHHHHHHcCChHHHHHHh----ccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHh
Q 043676          113 ---GNVAGDSPR-----CRDLVLSQGALIPLLAEL----NEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQL  180 (446)
Q Consensus       113 ---~~l~~~~~~-----~~~~~~~~~~i~~l~~~l----~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~l  180 (446)
                         .......+.     .+..+ ..++.+.+ ..-    ....+...+..+..+|+.++...|.. ....-..+..+..-
T Consensus       346 ~~~~~~~~~~~~~~l~~l~~~i-~~~g~p~~-~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l-~~~d~~li~~LF~s  422 (501)
T PF13001_consen  346 RGSSWIFKHISPQILKLLRPVI-LSQGWPLI-QDSSSQSNSSEDIELRSLAYETLGLLAKRAPSL-FSKDLSLIEFLFDS  422 (501)
T ss_pred             hcchHHhhhcCHHHHHHHHHHH-HhcCcccc-ccccccCCCcccHHHHHHHHHHHHHHHccCccc-ccccHHHHHHHHHH
Confidence               555433322     11222 22333322 100    02346788999999999999987443 22335677778887


Q ss_pred             hcCCCHhHHHHHHHHHHHhccC
Q 043676          181 VHSNDEDVLTYACWSLSYLADG  202 (446)
Q Consensus       181 l~~~~~~v~~~~~~~l~~l~~~  202 (446)
                      |..++++++..+-.+|..++..
T Consensus       423 L~~~~~evr~sIqeALssl~~a  444 (501)
T PF13001_consen  423 LEDESPEVRVSIQEALSSLAPA  444 (501)
T ss_pred             hhCcchHHHHHHHHHHHHHHHH
Confidence            8888899999988888888743

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.69  E-value=1e+02  Score=34.54  Aligned_cols=230  Identities=12%  Similarity=0.107  Sum_probs=120.3

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCChh
Q 043676           90 VPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK-PEPPFD  168 (446)
Q Consensus        90 i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~  168 (446)
                      ...+...+..+++..+-.+..+++.++..-+... .  -.+....++.-+....++-.|.--..+++.+-++. ......
T Consensus       878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~-f--~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q  954 (2067)
T KOG1822|consen  878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSAP-F--VASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ  954 (2067)
T ss_pred             HHHHhhhhccCChHHHHHHHHHHHHHHHhccccc-h--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence            4455555666788888888888888874332210 1  11134556666645555555555555566665554 333444


Q ss_pred             hhhhhHHHHHHhhcCC-CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCc---cchhHHHHHHH-----
Q 043676          169 QVRPALPALAQLVHSN-DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSP---SVLTPALRTVG-----  239 (446)
Q Consensus       169 ~~~~~~~~l~~ll~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~---~~~~~a~~~l~-----  239 (446)
                      .....+..+..+-+++ ++.++..++.++..+..........+++ ..+..+..++.+..+   ++...--+++.     
T Consensus       955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen  955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred             hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence            5566677777777766 5699999999999988665544443333 344444455444221   11111111111     


Q ss_pred             -Hh-------hcCCch--hhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 043676          240 -NI-------VTGDDF--QTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQ  309 (446)
Q Consensus       240 -~l-------~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~  309 (446)
                       ++       ...+..  ... -.....+-...-++.++ +..++.++..++.++-...+....   -.-+++.+..++.
T Consensus      1034 ~alittlgpeL~~N~~~d~t~-~~rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~ 1108 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTS-TLRTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLS 1108 (2067)
T ss_pred             HHHHHhcccccCCCCcccchh-HHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhc
Confidence             12       111211  111 11112222333344555 788888999988888543222110   0124566666665


Q ss_pred             cCCcchHHHHHHHHHHhcc
Q 043676          310 NAEFDTKKEAAWAISNATS  328 (446)
Q Consensus       310 ~~~~~v~~~a~~aL~~l~~  328 (446)
                      +...-.+.....++..+..
T Consensus      1109 s~~~i~r~~~~~clrql~~ 1127 (2067)
T KOG1822|consen 1109 SSYLILRRASFSCLRQLVQ 1127 (2067)
T ss_pred             chhhhhhhhHHhhhhHHhH
Confidence            5544444444555554443

>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []

Probab=80.56  E-value=72  Score=32.65  Aligned_cols=113  Identities=12%  Similarity=0.097  Sum_probs=73.1

Q ss_pred             ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcc
Q 043676          300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNM  379 (446)
Q Consensus       300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~  379 (446)
                      +...+...+.++++..-...+.++.++..-......+   ...-.+.-..-....-..+.....++|.++....+..   
T Consensus       442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~---  515 (727)
T PF12726_consen  442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSH---  515 (727)
T ss_pred             HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH---
Confidence            3455566666677777777777777775421100000   0111111111122222345666777777777765554   


Q ss_pred             cCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 043676          380 GTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCG  427 (446)
Q Consensus       380 ~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  427 (446)
                               ....+.+.+....+..+.-++++++++.|..++...|+.
T Consensus       516 ---------L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~  554 (727)
T PF12726_consen  516 ---------LKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDV  554 (727)
T ss_pred             ---------HHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcC
Confidence                     578888899999999999999999999999999999963

The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=80.55  E-value=28  Score=28.00  Aligned_cols=72  Identities=7%  Similarity=-0.010  Sum_probs=53.7

Q ss_pred             CcHHHHHHhcCCCCccchhHHHHHHHHhhcC-CchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC
Q 043676          214 GVCPRLVELLGHPSPSVLTPALRTVGNIVTG-DDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG  287 (446)
Q Consensus       214 ~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~  287 (446)
                      -.++.+++-+...+...+-.|...+..+... ..+..-.++ ..++..+-..|.+. ++++...++.+|..++..
T Consensus        38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~  110 (183)
T PF10274_consen   38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTR-DPEVFCATLKALQQLVTS  110 (183)
T ss_pred             hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence            5677777888888888888888888887765 333332222 35777888888888 999999999999999543

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []

Probab=80.23  E-value=46  Score=31.80  Aligned_cols=107  Identities=11%  Similarity=0.119  Sum_probs=68.2

Q ss_pred             cCChHHHHHHHhcCCcchHHHHHHHHHHhc-cCCCHHHHHHHHHcCChHHHHhccc-CCCHHHHHHHHHHHHHHHHhhhh
Q 043676          298 AGLIRPIVNLLQNAEFDTKKEAAWAISNAT-SGGTQEQIKHLVREGCVKPLCDLLL-CSDPEIVTVCLIGLENILKVGEA  375 (446)
Q Consensus       298 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~-~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~  375 (446)
                      .++++.+++.+..  +.+..-.+..+. .- ..........+.+.++++.|+++|+ +.+++++..|...|+.++..+.+
T Consensus        20 ~~~v~~llkHI~~--~~ImDlLLklIs-~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n   96 (475)
T PF04499_consen   20 PNFVDNLLKHIDT--PAIMDLLLKLIS-TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRN   96 (475)
T ss_pred             ccHHHHHHHhcCC--cHHHHHHHHHHc-cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence            4566666665532  333222222222 10 0123345667778899999999996 45678999999999999988765


Q ss_pred             hhcccCCCCccchHHHHHHHhChHHHHHHhhc
Q 043676          376 ERNMGTTIGDVNQYAQFVEEAGGLEKIENLQS  407 (446)
Q Consensus       376 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~  407 (446)
                      .........++++....+.....++.|...+-
T Consensus        97 ~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL  128 (475)
T PF04499_consen   97 APQNEQSSIGPNPLTRQLVSEETVEKLLDIML  128 (475)
T ss_pred             cccccccCCCccHHHHHHhChHHHHHHHHHHh
Confidence            43211112356888999999999988655543

This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	446
4b8j_A	528	Rimp_alpha1a Length = 528		0.0
2yns_A	490	Rimp_alpha_b54nls Length = 490		0.0
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		1e-118
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		1e-117
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		1e-117
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		1e-116
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-116
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		1e-115
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		1e-115
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-114
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		1e-114
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		1e-103
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		1e-103
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		1e-103
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		1e-103
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		1e-103
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		1e-103
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		1e-102
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		6e-13
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		1e-102
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		6e-13
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		1e-102
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		5e-13
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		1e-102
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		6e-13
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		1e-102
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		6e-13
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		1e-102
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		6e-13
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		1e-102
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		6e-13
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		1e-102
1ial_A	453	Importin Alpha, Mouse Length = 453		1e-102
1ial_A	453	Importin Alpha, Mouse Length = 453		7e-13
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		1e-101
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		1e-32
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		3e-26
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		8e-21
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		5e-12
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		5e-25
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		1e-24
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		1e-11
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		4e-22
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		3e-20
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		7e-11
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		5e-20
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		3e-19
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		4e-08

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/440 (73%), Positives = 372/440 (84%), Gaps = 4/440 (0%)
Query: 1   LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYP 60
           L S PA++ GV+SDDN+LQLEATT  RKLLS +R+PPIE+VIQSGVVPRFV+FL RED+P
Sbjct: 73  LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFP 132
Query: 61  QLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP 120
           QLQ+EAAW L NIASGTSENT VVIDHGAVPIFVKLL S SDDVREQAVWALGNVAGDSP
Sbjct: 133 QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSP 192
Query: 121 RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQL 180
           +CRDLVL+ GAL+PLLA+LNEH KLSMLRNAT TLSNFCRGKP+P F+Q RPALPALA+L
Sbjct: 193 KCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARL 252
Query: 181 VHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN 240
           +HSNDE+VLT ACW+LSYL+DGTNDKIQAVIEAGVCPRLVELL HPSPSVL PALRTVGN
Sbjct: 253 IHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGN 312
Query: 241 IVTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGL 300
           IVTGDD QTQCII+H A+P LL +L  N                TAGN++QIQAVI+AG+
Sbjct: 313 IVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGI 372
Query: 301 IRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVT 360
           I P+VNLLQ AEFD KKEAAWAISNATSGG+ +QIK+LV EGC+KPLCDLL+C D  IVT
Sbjct: 373 IGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVT 432
Query: 361 VCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKI 420
           VCL GLENILKVGE ++ +    GDVN ++Q ++EA GLEKIENLQSHDNNEI+EK+VKI
Sbjct: 433 VCLEGLENILKVGETDKTLAA--GDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKI 490
Query: 421 FKTYWCGRNEEEDALGSNVI 440
            + YW   +EE+D +G+  +
Sbjct: 491 LEAYWM--DEEDDTMGATTV 508

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/438 (73%), Positives = 371/438 (84%), Gaps = 4/438 (0%)
Query: 3   SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQL 62
           S PA++ GV+SDDN+LQLEATT  RKLLS +R+PPIE+VIQSGVVPRFV+FL RED+PQL
Sbjct: 37  SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQL 96
Query: 63  QYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRC 122
           Q+EAAW L NIASGTSENT VVIDHGAVPIFVKLL S SDDVREQAVWALGNVAGDSP+C
Sbjct: 97  QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC 156
Query: 123 RDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH 182
           RDLVL+ GAL+PLLA+LNEH KLSMLRNAT TLSNFCRGKP+P F+Q RPALPALA+L+H
Sbjct: 157 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIH 216
Query: 183 SNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIV 242
           SNDE+VLT ACW+LSYL+DGTNDKIQAVIEAGVCPRLVELL HPSPSVL PALRTVGNIV
Sbjct: 217 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV 276
Query: 243 TGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLIR 302
           TGDD QTQCII+H A+P LL +L  N                TAGN++QIQAVI+AG+I 
Sbjct: 277 TGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIG 336
Query: 303 PIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVC 362
           P+VNLLQ AEFD KKEAAWAISNATSGG+ +QIK+LV EGC+KPLCDLL+C D  IVTVC
Sbjct: 337 PLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVC 396
Query: 363 LIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFK 422
           L GLENILKVGE ++ +    GDVN ++Q ++EA GLEKIENLQSHDNNEI+EK+VKI +
Sbjct: 397 LEGLENILKVGETDKTLAA--GDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILE 454
Query: 423 TYWCGRNEEEDALGSNVI 440
            YW   +EE+D +G+  +
Sbjct: 455 AYW--MDEEDDTMGATTV 470

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score =  420 bits (1080), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/427 (54%), Positives = 291/427 (68%), Gaps = 5/427 (1%)
Query: 7   LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQS-GVVPRFVEFLMREDYPQLQYE 65
           ++  ++S     QL AT   RKLLS + NPPI++VI + GVV RFVEFL R++   LQ+E
Sbjct: 22  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 81
Query: 66  AAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDL 125
           +AWVL NIASG S  T +VI  GAVPIF++LLSS  +DV+EQAVWALGN+AGDS  CRD 
Sbjct: 82  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 141
Query: 126 VLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPP-FDQVRPALPALAQLVHSN 184
           VL    L PLL   ++  +L+M RNA   LSN CRGK  PP F +V P L  L+ L+  +
Sbjct: 142 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 201
Query: 185 DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTG 244
           D DVL  ACW+LSYL+DG NDKIQAVI+AGVC RLVELL H    V++PALR VGNIVTG
Sbjct: 202 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 261
Query: 245 DDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLIRPI 304
           DD QTQ I+N  A+   L  L+ +                TAGNR QIQ VIDA +   +
Sbjct: 262 DDIQTQVILNCSAL-QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 320
Query: 305 VNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLI 364
           +++LQ AEF T+KEAAWAI+NATSGG+ EQIK+LV  GC+KPLCDLL   D +IV V L 
Sbjct: 321 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 380
Query: 365 GLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTY 424
           GLENIL++GE E     T   +N Y   +EEA GL+KIE LQSH+N EI++K+  + + Y
Sbjct: 381 GLENILRLGEQEAKRNGT--GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHY 438
Query: 425 WCGRNEE 431
           +   +E+
Sbjct: 439 FGTEDED 445

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score =  420 bits (1079), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 231/427 (54%), Positives = 291/427 (68%), Gaps = 5/427 (1%)
Query: 7   LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQS-GVVPRFVEFLMREDYPQLQYE 65
           ++  ++S     QL AT   RKLLS + NPPI++VI + GVV RFVEFL R++   LQ+E
Sbjct: 25  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84
Query: 66  AAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDL 125
           +AWVL NIASG S  T +VI  GAVPIF++LLSS  +DV+EQAVWALGN+AGDS  CRD 
Sbjct: 85  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 126 VLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPP-FDQVRPALPALAQLVHSN 184
           VL    L PLL   ++  +L+M RNA   LSN CRGK  PP F +V P L  L+ L+  +
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204
Query: 185 DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTG 244
           D DVL  ACW+LSYL+DG NDKIQAVI+AGVC RLVELL H    V++PALR VGNIVTG
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264
Query: 245 DDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLIRPI 304
           DD QTQ I+N  A+   L  L+ +                TAGNR QIQ VIDA +   +
Sbjct: 265 DDIQTQVILNCSAL-QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 323
Query: 305 VNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLI 364
           +++LQ AEF T+KEAAWAI+NATSGG+ EQIK+LV  GC+KPLCDLL   D +IV V L 
Sbjct: 324 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 383
Query: 365 GLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTY 424
           GLENIL++GE E     T   +N Y   +EEA GL+KIE LQSH+N EI++K+  + + Y
Sbjct: 384 GLENILRLGEQEAKRNGT--GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHY 441
Query: 425 WCGRNEE 431
           +   +E+
Sbjct: 442 FGTEDED 448

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score =  417 bits (1071), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 231/436 (52%), Positives = 300/436 (68%), Gaps = 12/436 (2%)
Query: 4   FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ-L 62
            P +   + SDD   QL AT   R++LS +  PPI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 89  LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 147
Query: 63  QYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRC 122
           Q EAAW L NIASGTS  T VV+D  AVP+F++LL + S +V+EQA+WALGNVAGDS   
Sbjct: 148 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 207
Query: 123 RDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG-KPEPPFDQVRPALPALAQLV 181
           RD VL   A+ P+L   N + K S++R AT TLSN CRG KP+P +  V  ALP LA+L+
Sbjct: 208 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 266
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
           +S D + L  ACW++SYL+DG  + IQAVI+  +  RLVELL H S  V TPALR VGNI
Sbjct: 267 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
           VTG+D QTQ +IN G +P  L +L+ +                TAGN EQIQAVIDA LI
Sbjct: 327 VTGNDLQTQVVINAGVLP-ALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 385
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQ--EQIKHLVREGCVKPLCDLLLCSDPEIV 359
            P+V LL+ AE+ TKKEA WAISNA+SGG Q  + I++LV +GC+KPLCDLL  +D  I+
Sbjct: 386 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 445
Query: 360 TVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVK 419
            V L  LENILK+GEA++       ++N+ A F+E+AGG+EKI N Q ++N++I+EK+ K
Sbjct: 446 EVTLDALENILKMGEADKEARGL--NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 503
Query: 420 IFKTYWCGRNEEEDAL 435
           I +TY+    EEEDA+
Sbjct: 504 IIETYF---GEEEDAV 516

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score =  413 bits (1062), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/436 (52%), Positives = 299/436 (68%), Gaps = 12/436 (2%)
Query: 4   FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ-L 62
            P +   + SDD   QL AT   R++LS +  PPI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 60
Query: 63  QYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRC 122
           Q EAAW L NIASGTS  T VV+D  AVP+F++LL + S +V+EQA+WALGNVAGDS   
Sbjct: 61  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 123 RDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG-KPEPPFDQVRPALPALAQLV 181
           RD VL   A+ P+L   N + K S++R AT TLSN CRG KP+P +  V  ALP LA+L+
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
           +S D + L  ACW++SYL+DG  + IQAVI+  +  RLVELL H S  V TPALR VGNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
           VTG+D QTQ +IN G +P  L +L+ +                TAGN EQIQAVIDA LI
Sbjct: 240 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 298
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQ--EQIKHLVREGCVKPLCDLLLCSDPEIV 359
            P+V LL+ AE  TKKEA WAISNA+SGG Q  + I++LV +GC+KPLCDLL  +D  I+
Sbjct: 299 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 358
Query: 360 TVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVK 419
            V L  LENILK+GEA++       ++N+ A F+E+AGG+EKI N Q ++N++I+EK+ K
Sbjct: 359 EVTLDALENILKMGEADKEARGL--NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 416
Query: 420 IFKTYWCGRNEEEDAL 435
           I +TY+    EEEDA+
Sbjct: 417 IIETYF---GEEEDAV 429

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score =  413 bits (1062), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/436 (52%), Positives = 299/436 (68%), Gaps = 12/436 (2%)
Query: 4   FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ-L 62
            P +   + SDD   QL AT   R++LS +  PPI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 60
Query: 63  QYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRC 122
           Q EAAW L NIASGTS  T VV+D  AVP+F++LL + S +V+EQA+WALGNVAGDS   
Sbjct: 61  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 123 RDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG-KPEPPFDQVRPALPALAQLV 181
           RD VL   A+ P+L   N + K S++R AT TLSN CRG KP+P +  V  ALP LA+L+
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
           +S D + L  ACW++SYL+DG  + IQAVI+  +  RLVELL H S  V TPALR VGNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
           VTG+D QTQ +IN G +P  L +L+ +                TAGN EQIQAVIDA LI
Sbjct: 240 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 298
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQ--EQIKHLVREGCVKPLCDLLLCSDPEIV 359
            P+V LL+ AE  TKKEA WAISNA+SGG Q  + I++LV +GC+KPLCDLL  +D  I+
Sbjct: 299 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 358
Query: 360 TVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVK 419
            V L  LENILK+GEA++       ++N+ A F+E+AGG+EKI N Q ++N++I+EK+ K
Sbjct: 359 EVTLDALENILKMGEADKEARGL--NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 416
Query: 420 IFKTYWCGRNEEEDAL 435
           I +TY+    EEEDA+
Sbjct: 417 IIETYF---GEEEDAV 429

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score =  412 bits (1059), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/426 (53%), Positives = 294/426 (69%), Gaps = 9/426 (2%)
Query: 4   FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ-L 62
            P +   + SDD   QL AT   R++LS +  PPI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 59
Query: 63  QYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRC 122
           Q EAAW L NIASGTS  T VV+D  AVP+F++LL + S +V+EQA+WALGNVAGDS   
Sbjct: 60  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 123 RDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG-KPEPPFDQVRPALPALAQLV 181
           RD VL   A+ P+L   N + K S++R AT TLSN CRG KP+P +  V  ALP LA+L+
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
           +S D + L  ACW++SYL+DG  + IQAVI+  +  RLVELL H S  V TPALR VGNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
           VTG+D QTQ +IN G +P  L +L+ +                TAGN EQIQAVIDA LI
Sbjct: 239 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 297
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQ--EQIKHLVREGCVKPLCDLLLCSDPEIV 359
            P+V LL+ AE+ TKKEA WAISNA+SGG Q  + I++LV +GC+KPLCDLL  +D  I+
Sbjct: 298 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 357
Query: 360 TVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVK 419
            V L  LENILK+GEA++       ++N+ A F+E+AGG+EKI N Q ++N++I+EK+ K
Sbjct: 358 EVTLDALENILKMGEADKEARGL--NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 415
Query: 420 IFKTYW 425
           I +TY+
Sbjct: 416 IIETYF 421

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score =  412 bits (1058), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/426 (52%), Positives = 294/426 (69%), Gaps = 9/426 (2%)
Query: 4   FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ-L 62
            P +   + SDD   QL AT   R++LS +  PPI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 59
Query: 63  QYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRC 122
           Q EAAW L NIASGTS  T VV+D  AVP+F++LL + S +V+EQA+WALGNVAGDS   
Sbjct: 60  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 123 RDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG-KPEPPFDQVRPALPALAQLV 181
           RD VL   A+ P+L   N + K S++R AT TLSN CRG KP+P +  V  ALP LA+L+
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
           +S D + L  ACW++SYL+DG  + IQAVI+  +  RLVELL H S  V TPALR VGNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
           VTG+D QTQ +IN G +P  L +L+ +                TAGN EQIQAVIDA LI
Sbjct: 239 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 297
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQ--EQIKHLVREGCVKPLCDLLLCSDPEIV 359
            P+V LL+ AE+ TKKEA WAISNA+SGG Q  + I++LV +GC+KPLCDLL  +D  I+
Sbjct: 298 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 357
Query: 360 TVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVK 419
            V L  LENI+K+GEA++       ++N+ A F+E+AGG+EKI N Q ++N++I+EK+ K
Sbjct: 358 EVTLDALENIIKMGEADKEARGL--NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 415
Query: 420 IFKTYW 425
           I +TY+
Sbjct: 416 IIETYF 421

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score =  409 bits (1052), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/426 (53%), Positives = 293/426 (68%), Gaps = 9/426 (2%)
Query: 4   FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ-L 62
            P +   + SDD   QL AT   R++LS +  PPI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 3   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 61
Query: 63  QYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRC 122
           Q EAAW L NIASGTS  T VV+D  AVP+F++LL + S +V+EQA+WALGNVAGDS   
Sbjct: 62  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 123 RDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG-KPEPPFDQVRPALPALAQLV 181
           RD VL   A+ P+L   N + K S++R AT TLSN CRG KP+P +  V  ALP LA+L+
Sbjct: 122 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 180
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
           +S D + L  ACW++SYL+DG  + IQAVI+  +  RLVELL H S  V TPALR VGNI
Sbjct: 181 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 240
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
           VTG+D QTQ +IN G +P  L +L+ +                TAGN EQIQAVIDA LI
Sbjct: 241 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 299
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQ--EQIKHLVREGCVKPLCDLLLCSDPEIV 359
            P+V LL+ AE  TKKEA WAISNA+SGG Q  + I++LV +GC+KPLCDLL  +D  I+
Sbjct: 300 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 359
Query: 360 TVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVK 419
            V L  LENILK+GEA++       ++N+ A F+E+AGG+EKI N Q ++N++I+EK+ K
Sbjct: 360 EVTLDALENILKMGEADKEARGL--NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 417
Query: 420 IFKTYW 425
           I +TY+
Sbjct: 418 IIETYF 423

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score =  409 bits (1052), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/426 (53%), Positives = 293/426 (68%), Gaps = 9/426 (2%)
Query: 4   FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ-L 62
            P +   + SDD   QL AT   R++LS +  PPI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 3   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 61
Query: 63  QYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRC 122
           Q EAAW L NIASGTS  T VV+D  AVP+F++LL + S +V+EQA+WALGNVAGDS   
Sbjct: 62  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 123 RDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG-KPEPPFDQVRPALPALAQLV 181
           RD VL   A+ P+L   N + K S++R AT TLSN CRG KP+P +  V  ALP LA+L+
Sbjct: 122 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 180
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
           +S D + L  ACW++SYL+DG  + IQAVI+  +  RLVELL H S  V TPALR VGNI
Sbjct: 181 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 240
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
           VTG+D QTQ +IN G +P  L +L+ +                TAGN EQIQAVIDA LI
Sbjct: 241 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 299
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQ--EQIKHLVREGCVKPLCDLLLCSDPEIV 359
            P+V LL+ AE  TKKEA WAISNA+SGG Q  + I++LV +GC+KPLCDLL  +D  I+
Sbjct: 300 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 359
Query: 360 TVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVK 419
            V L  LENILK+GEA++       ++N+ A F+E+AGG+EKI N Q ++N++I+EK+ K
Sbjct: 360 EVTLDALENILKMGEADKEARGL--NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 417
Query: 420 IFKTYW 425
           I +TY+
Sbjct: 418 IIETYF 423

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score =  372 bits (955), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/445 (43%), Positives = 278/445 (62%), Gaps = 13/445 (2%)
Query: 7   LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEA 66
           +V G+ S++   QL+AT  +RKLLS ++ PPI+ +I++G++P+FV FL + D   +Q+E+
Sbjct: 48  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 107
Query: 67  AWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 126
           AW L NIASGTSE T  V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    RDLV
Sbjct: 108 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 167
Query: 127 LSQGALIPLLAELN----EHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLV 181
           +  GA+ PLLA L            LRN T TLSN CR K P PP D V   LP L +L+
Sbjct: 168 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 227
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
           H ND +VL  +CW++SYL DG N++I+ V++ GV P+LV+LLG     ++TPALR +GNI
Sbjct: 228 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 287
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
           VTG D QTQ +I+ GA+     +L  N                TAG ++QIQ V++ GL+
Sbjct: 288 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 346
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTV 361
             +V +L  A+F T+KEAAWAI+N TSGGT EQI +LV  G ++PL +LL   D +I+ V
Sbjct: 347 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 406
Query: 362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421
            L  + NI +  E        +G+  + +  +EE GGL+KIE LQ H+N  +++ S+ + 
Sbjct: 407 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 459
Query: 422 KTYWCGRNEEEDALGSNVITNGKVY 446
           + Y+    EE+  +     + G  +
Sbjct: 460 EKYFSVEEEEDQNVVPETTSEGFAF 484

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score =  372 bits (954), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/445 (43%), Positives = 278/445 (62%), Gaps = 13/445 (2%)
Query: 7   LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEA 66
           +V G+ S++   QL+AT  +RKLLS ++ PPI+ +I++G++P+FV FL + D   +Q+E+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 67  AWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 126
           AW L NIASGTSE T  V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 127 LSQGALIPLLAELN----EHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLV 181
           +  GA+ PLLA L            LRN T TLSN CR K P PP D V   LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
           H ND +VL  +CW++SYL DG N++I+ V++ GV P+LV+LLG     ++TPALR +GNI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
           VTG D QTQ +I+ GA+     +L  N                TAG ++QIQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTV 361
             +V +L  A+F T+KEAAWAI+N TSGGT EQI +LV  G ++PL +LL   D +I+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421
            L  + NI +  E        +G+  + +  +EE GGL+KIE LQ H+N  +++ S+ + 
Sbjct: 421 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473
Query: 422 KTYWCGRNEEEDALGSNVITNGKVY 446
           + Y+    EE+  +     + G  +
Sbjct: 474 EKYFSVEEEEDQNVVPETTSEGFAF 498

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score =  372 bits (954), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/445 (43%), Positives = 278/445 (62%), Gaps = 13/445 (2%)
Query: 7   LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEA 66
           +V G+ S++   QL+AT  +RKLLS ++ PPI+ +I++G++P+FV FL + D   +Q+E+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 67  AWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 126
           AW L NIASGTSE T  V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 127 LSQGALIPLLAELN----EHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLV 181
           +  GA+ PLLA L            LRN T TLSN CR K P PP D V   LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
           H ND +VL  +CW++SYL DG N++I+ V++ GV P+LV+LLG     ++TPALR +GNI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
           VTG D QTQ +I+ GA+     +L  N                TAG ++QIQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTV 361
             +V +L  A+F T+KEAAWAI+N TSGGT EQI +LV  G ++PL +LL   D +I+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421
            L  + NI +  E        +G+  + +  +EE GGL+KIE LQ H+N  +++ S+ + 
Sbjct: 421 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473
Query: 422 KTYWCGRNEEEDALGSNVITNGKVY 446
           + Y+    EE+  +     + G  +
Sbjct: 474 EKYFSVEEEEDQNVVPETTSEGFAF 498

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score =  371 bits (953), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/445 (43%), Positives = 278/445 (62%), Gaps = 13/445 (2%)
Query: 7   LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEA 66
           +V G+ S++   QL+AT  +RKLLS ++ PPI+ +I++G++P+FV FL + D   +Q+E+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 67  AWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 126
           AW L NIASGTSE T  V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 127 LSQGALIPLLAELN----EHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLV 181
           +  GA+ PLLA L            LRN T TLSN CR K P PP D V   LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
           H ND +VL  +CW++SYL DG N++I+ V++ GV P+LV+LLG     ++TPALR +GNI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
           VTG D QTQ +I+ GA+     +L  N                TAG ++QIQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTV 361
             +V +L  A+F T+KEAAWAI+N TSGGT EQI +LV  G ++PL +LL   D +I+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421
            L  + NI +  E        +G+  + +  +EE GGL+KIE LQ H+N  +++ S+ + 
Sbjct: 421 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473
Query: 422 KTYWCGRNEEEDALGSNVITNGKVY 446
           + Y+    EE+  +     + G  +
Sbjct: 474 EKYFSVEEEEDQNVVPETTSEGFAF 498

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score =  371 bits (953), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/445 (43%), Positives = 278/445 (62%), Gaps = 13/445 (2%)
Query: 7   LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEA 66
           +V G+ S++   QL+AT  +RKLLS ++ PPI+ +I++G++P+FV FL + D   +Q+E+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 67  AWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 126
           AW L NIASGTSE T  V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    RDLV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 127 LSQGALIPLLAELN----EHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLV 181
           +  GA+ PLLA L            LRN T TLSN CR K P PP D V   LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
           H ND +VL  +CW++SYL DG N++I+ V++ GV P+LV+LLG     ++TPALR +GNI
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
           VTG D QTQ +I+ GA+     +L  N                TAG ++QIQ V++ GL+
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTV 361
             +V +L  A+F T+KEAAWAI+N TSGGT EQI +LV  G ++PL +LL   D +I+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421
            L  + NI +  E        +G+  + +  +EE GGL+KIE LQ H+N  +++ S+ + 
Sbjct: 371 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 423
Query: 422 KTYWCGRNEEEDALGSNVITNGKVY 446
           + Y+    EE+  +     + G  +
Sbjct: 424 EKYFSVEEEEDQNVVPETTSEGFAF 448

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score =  371 bits (953), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/445 (43%), Positives = 278/445 (62%), Gaps = 13/445 (2%)
Query: 7   LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEA 66
           +V G+ S++   QL+AT  +RKLLS ++ PPI+ +I++G++P+FV FL + D   +Q+E+
Sbjct: 18  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 77
Query: 67  AWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 126
           AW L NIASGTSE T  V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    RDLV
Sbjct: 78  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 137
Query: 127 LSQGALIPLLAELN----EHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLV 181
           +  GA+ PLLA L            LRN T TLSN CR K P PP D V   LP L +L+
Sbjct: 138 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 197
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
           H ND +VL  +CW++SYL DG N++I+ V++ GV P+LV+LLG     ++TPALR +GNI
Sbjct: 198 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 257
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
           VTG D QTQ +I+ GA+     +L  N                TAG ++QIQ V++ GL+
Sbjct: 258 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 316
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTV 361
             +V +L  A+F T+KEAAWAI+N TSGGT EQI +LV  G ++PL +LL   D +I+ V
Sbjct: 317 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 376
Query: 362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421
            L  + NI +  E        +G+  + +  +EE GGL+KIE LQ H+N  +++ S+ + 
Sbjct: 377 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 429
Query: 422 KTYWCGRNEEEDALGSNVITNGKVY 446
           + Y+    EE+  +     + G  +
Sbjct: 430 EKYFSVEEEEDQNVVPETTSEGFAF 454

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score =  369 bits (947), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/424 (45%), Positives = 271/424 (63%), Gaps = 13/424 (3%)
Query: 7   LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEA 66
           +V G+ S++   QL+AT  +RKLLS ++ PPI+ +I++G++P+FV FL + D   +Q+E+
Sbjct: 46  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 105
Query: 67  AWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 126
           AW L NIASGTSE T  V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    RDLV
Sbjct: 106 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 165
Query: 127 LSQGALIPLLAELN----EHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLV 181
           +  GA+ PLLA L            LRN T TLSN CR K P PP D V   LP L +L+
Sbjct: 166 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 225
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
           H ND +VL  +CW++SYL DG N++I+ V++ GV P+LV+LLG     ++TPALR +GNI
Sbjct: 226 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 285
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
           VTG D QTQ +I+ GA+     +L  N                TAG ++QIQ V++ GL+
Sbjct: 286 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 344
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTV 361
             +V +L  A+F T+KEAAWAI+N TSGGT EQI +LV  G ++PL +LL   D +I+ V
Sbjct: 345 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 404
Query: 362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421
            L  + NI +  E        +G+  + +  +EE GGL+KIE LQ H+N  +++ S+ + 
Sbjct: 405 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 457
Query: 422 KTYW 425
           + Y+
Sbjct: 458 EKYF 461

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 125/288 (43%), Gaps = 21/288 (7%)
Query: 151 ATRTLSNFCRGKPEPPFDQVRPA--LPALAQLVHSNDEDVLTY-ACWSLSYLADGTNDKI 207
           AT+        + +PP D +  A  +P     +   D   + + + W+L+ +A GT+++ 
Sbjct: 61  ATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 120
Query: 208 QAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDML-V 266
           +AV++ G  P  + LL  P   +   A+  +GNI          +I HGA+  LL +L V
Sbjct: 121 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAV 180
Query: 267 HNHXXXXXXXXXXXXXXXTAGNREQIQAV-IDA--GLIRPIVNLLQNAEFDTKKEAAWAI 323
            +                +   R +  A  +DA   ++  +V LL + + +   ++ WAI
Sbjct: 181 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 240
Query: 324 SNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTI 383
           S  T G   E+I+ +V++G V  L  LL  ++  IVT  L             R +G  +
Sbjct: 241 SYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPAL-------------RAIGNIV 286
Query: 384 GDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNEE 431
              ++  Q V +AG L    +L ++    I +++         GR ++
Sbjct: 287 TGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQ 334

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score =  369 bits (946), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/424 (45%), Positives = 271/424 (63%), Gaps = 13/424 (3%)
Query: 7   LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEA 66
           +V G+ S++   QL+AT  +RKLLS ++ PPI+ +I++G++P+FV FL + D   +Q+E+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 67  AWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 126
           AW L NIASGTSE T  V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    RDLV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 127 LSQGALIPLLAELN----EHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLV 181
           +  GA+ PLLA L            LRN T TLSN CR K P PP D V   LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
           H ND +VL  +CW++SYL DG N++I+ V++ GV P+LV+LLG     ++TPALR +GNI
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
           VTG D QTQ +I+ GA+     +L  N                TAG ++QIQ V++ GL+
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTV 361
             +V +L  A+F T+KEAAWAI+N TSGGT EQI +LV  G ++PL +LL   D +I+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421
            L  + NI +  E        +G+  + +  +EE GGL+KIE LQ H+N  +++ S+ + 
Sbjct: 371 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 423
Query: 422 KTYW 425
           + Y+
Sbjct: 424 EKYF 427

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 125/288 (43%), Gaps = 21/288 (7%)
Query: 151 ATRTLSNFCRGKPEPPFDQVRPA--LPALAQLVHSNDEDVLTY-ACWSLSYLADGTNDKI 207
           AT+        + +PP D +  A  +P     +   D   + + + W+L+ +A GT+++ 
Sbjct: 27  ATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 86
Query: 208 QAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDML-V 266
           +AV++ G  P  + LL  P   +   A+  +GNI          +I HGA+  LL +L V
Sbjct: 87  KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAV 146
Query: 267 HNHXXXXXXXXXXXXXXXTAGNREQIQAV-IDA--GLIRPIVNLLQNAEFDTKKEAAWAI 323
            +                +   R +  A  +DA   ++  +V LL + + +   ++ WAI
Sbjct: 147 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 206
Query: 324 SNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTI 383
           S  T G   E+I+ +V++G V  L  LL  ++  IVT  L             R +G  +
Sbjct: 207 SYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPAL-------------RAIGNIV 252
Query: 384 GDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNEE 431
              ++  Q V +AG L    +L ++    I +++         GR ++
Sbjct: 253 TGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQ 300

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score =  369 bits (946), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/424 (45%), Positives = 271/424 (63%), Gaps = 13/424 (3%)
Query: 7   LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEA 66
           +V G+ S++   QL+AT  +RKLLS ++ PPI+ +I++G++P+FV FL + D   +Q+E+
Sbjct: 11  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 67  AWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 126
           AW L NIASGTSE T  V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    RDLV
Sbjct: 71  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 127 LSQGALIPLLAELN----EHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLV 181
           +  GA+ PLLA L            LRN T TLSN CR K P PP D V   LP L +L+
Sbjct: 131 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 190
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
           H ND +VL  +CW++SYL DG N++I+ V++ GV P+LV+LLG     ++TPALR +GNI
Sbjct: 191 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 250
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
           VTG D QTQ +I+ GA+     +L  N                TAG ++QIQ V++ GL+
Sbjct: 251 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 309
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTV 361
             +V +L  A+F T+KEAAWAI+N TSGGT EQI +LV  G ++PL +LL   D +I+ V
Sbjct: 310 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 369
Query: 362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421
            L  + NI +  E        +G+  + +  +EE GGL+KIE LQ H+N  +++ S+ + 
Sbjct: 370 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 422
Query: 422 KTYW 425
           + Y+
Sbjct: 423 EKYF 426

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 125/288 (43%), Gaps = 21/288 (7%)
Query: 151 ATRTLSNFCRGKPEPPFDQVRPA--LPALAQLVHSNDEDVLTY-ACWSLSYLADGTNDKI 207
           AT+        + +PP D +  A  +P     +   D   + + + W+L+ +A GT+++ 
Sbjct: 26  ATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 85
Query: 208 QAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDML-V 266
           +AV++ G  P  + LL  P   +   A+  +GNI          +I HGA+  LL +L V
Sbjct: 86  KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAV 145
Query: 267 HNHXXXXXXXXXXXXXXXTAGNREQIQAV-IDA--GLIRPIVNLLQNAEFDTKKEAAWAI 323
            +                +   R +  A  +DA   ++  +V LL + + +   ++ WAI
Sbjct: 146 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 205
Query: 324 SNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTI 383
           S  T G   E+I+ +V++G V  L  LL  ++  IVT  L             R +G  +
Sbjct: 206 SYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPAL-------------RAIGNIV 251
Query: 384 GDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNEE 431
              ++  Q V +AG L    +L ++    I +++         GR ++
Sbjct: 252 TGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQ 299

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score =  369 bits (946), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/424 (45%), Positives = 271/424 (63%), Gaps = 13/424 (3%)
Query: 7   LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEA 66
           +V G+ S++   QL+AT  +RKLLS ++ PPI+ +I++G++P+FV FL + D   +Q+E+
Sbjct: 11  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 67  AWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 126
           AW L NIASGTSE T  V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    RDLV
Sbjct: 71  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 127 LSQGALIPLLAELN----EHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLV 181
           +  GA+ PLLA L            LRN T TLSN CR K P PP D V   LP L +L+
Sbjct: 131 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 190
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
           H ND +VL  +CW++SYL DG N++I+ V++ GV P+LV+LLG     ++TPALR +GNI
Sbjct: 191 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 250
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
           VTG D QTQ +I+ GA+     +L  N                TAG ++QIQ V++ GL+
Sbjct: 251 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 309
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTV 361
             +V +L  A+F T+KEAAWAI+N TSGGT EQI +LV  G ++PL +LL   D +I+ V
Sbjct: 310 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 369
Query: 362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421
            L  + NI +  E        +G+  + +  +EE GGL+KIE LQ H+N  +++ S+ + 
Sbjct: 370 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 422
Query: 422 KTYW 425
           + Y+
Sbjct: 423 EKYF 426

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 125/288 (43%), Gaps = 21/288 (7%)
Query: 151 ATRTLSNFCRGKPEPPFDQVRPA--LPALAQLVHSNDEDVLTY-ACWSLSYLADGTNDKI 207
           AT+        + +PP D +  A  +P     +   D   + + + W+L+ +A GT+++ 
Sbjct: 26  ATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 85
Query: 208 QAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDML-V 266
           +AV++ G  P  + LL  P   +   A+  +GNI          +I HGA+  LL +L V
Sbjct: 86  KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAV 145
Query: 267 HNHXXXXXXXXXXXXXXXTAGNREQIQAV-IDA--GLIRPIVNLLQNAEFDTKKEAAWAI 323
            +                +   R +  A  +DA   ++  +V LL + + +   ++ WAI
Sbjct: 146 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 205
Query: 324 SNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTI 383
           S  T G   E+I+ +V++G V  L  LL  ++  IVT  L             R +G  +
Sbjct: 206 SYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPAL-------------RAIGNIV 251
Query: 384 GDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNEE 431
              ++  Q V +AG L    +L ++    I +++         GR ++
Sbjct: 252 TGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQ 299

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score =  369 bits (946), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/424 (45%), Positives = 271/424 (63%), Gaps = 13/424 (3%)
Query: 7   LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEA 66
           +V G+ S++   QL+AT  +RKLLS ++ PPI+ +I++G++P+FV FL + D   +Q+E+
Sbjct: 7   IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 67  AWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 126
           AW L NIASGTSE T  V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    RDLV
Sbjct: 67  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 127 LSQGALIPLLAELN----EHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLV 181
           +  GA+ PLLA L            LRN T TLSN CR K P PP D V   LP L +L+
Sbjct: 127 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 186
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
           H ND +VL  +CW++SYL DG N++I+ V++ GV P+LV+LLG     ++TPALR +GNI
Sbjct: 187 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 246
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
           VTG D QTQ +I+ GA+     +L  N                TAG ++QIQ V++ GL+
Sbjct: 247 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 305
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTV 361
             +V +L  A+F T+KEAAWAI+N TSGGT EQI +LV  G ++PL +LL   D +I+ V
Sbjct: 306 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 365
Query: 362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421
            L  + NI +  E        +G+  + +  +EE GGL+KIE LQ H+N  +++ S+ + 
Sbjct: 366 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 418
Query: 422 KTYW 425
           + Y+
Sbjct: 419 EKYF 422

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 125/288 (43%), Gaps = 21/288 (7%)
Query: 151 ATRTLSNFCRGKPEPPFDQVRPA--LPALAQLVHSNDEDVLTY-ACWSLSYLADGTNDKI 207
           AT+        + +PP D +  A  +P     +   D   + + + W+L+ +A GT+++ 
Sbjct: 22  ATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 81
Query: 208 QAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDML-V 266
           +AV++ G  P  + LL  P   +   A+  +GNI          +I HGA+  LL +L V
Sbjct: 82  KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAV 141
Query: 267 HNHXXXXXXXXXXXXXXXTAGNREQIQAV-IDA--GLIRPIVNLLQNAEFDTKKEAAWAI 323
            +                +   R +  A  +DA   ++  +V LL + + +   ++ WAI
Sbjct: 142 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 201
Query: 324 SNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTI 383
           S  T G   E+I+ +V++G V  L  LL  ++  IVT  L             R +G  +
Sbjct: 202 SYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPAL-------------RAIGNIV 247
Query: 384 GDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNEE 431
              ++  Q V +AG L    +L ++    I +++         GR ++
Sbjct: 248 TGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQ 295

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score =  369 bits (946), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/424 (45%), Positives = 271/424 (63%), Gaps = 13/424 (3%)
Query: 7   LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEA 66
           +V G+ S++   QL+AT  +RKLLS ++ PPI+ +I++G++P+FV FL + D   +Q+E+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 67  AWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 126
           AW L NIASGTSE T  V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    RDLV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 127 LSQGALIPLLAELN----EHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLV 181
           +  GA+ PLLA L            LRN T TLSN CR K P PP D V   LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
           H ND +VL  +CW++SYL DG N++I+ V++ GV P+LV+LLG     ++TPALR +GNI
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
           VTG D QTQ +I+ GA+     +L  N                TAG ++QIQ V++ GL+
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTV 361
             +V +L  A+F T+KEAAWAI+N TSGGT EQI +LV  G ++PL +LL   D +I+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421
            L  + NI +  E        +G+  + +  +EE GGL+KIE LQ H+N  +++ S+ + 
Sbjct: 371 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 423
Query: 422 KTYW 425
           + Y+
Sbjct: 424 EKYF 427

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 125/288 (43%), Gaps = 21/288 (7%)
Query: 151 ATRTLSNFCRGKPEPPFDQVRPA--LPALAQLVHSNDEDVLTY-ACWSLSYLADGTNDKI 207
           AT+        + +PP D +  A  +P     +   D   + + + W+L+ +A GT+++ 
Sbjct: 27  ATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 86
Query: 208 QAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDML-V 266
           +AV++ G  P  + LL  P   +   A+  +GNI          +I HGA+  LL +L V
Sbjct: 87  KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAV 146
Query: 267 HNHXXXXXXXXXXXXXXXTAGNREQIQAV-IDA--GLIRPIVNLLQNAEFDTKKEAAWAI 323
            +                +   R +  A  +DA   ++  +V LL + + +   ++ WAI
Sbjct: 147 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 206
Query: 324 SNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTI 383
           S  T G   E+I+ +V++G V  L  LL  ++  IVT  L             R +G  +
Sbjct: 207 SYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPAL-------------RAIGNIV 252
Query: 384 GDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNEE 431
              ++  Q V +AG L    +L ++    I +++         GR ++
Sbjct: 253 TGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQ 300

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score =  369 bits (946), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/424 (45%), Positives = 271/424 (63%), Gaps = 13/424 (3%)
Query: 7   LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEA 66
           +V G+ S++   QL+AT  +RKLLS ++ PPI+ +I++G++P+FV FL + D   +Q+E+
Sbjct: 7   IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 67  AWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 126
           AW L NIASGTSE T  V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    RDLV
Sbjct: 67  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 127 LSQGALIPLLAELN----EHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLV 181
           +  GA+ PLLA L            LRN T TLSN CR K P PP D V   LP L +L+
Sbjct: 127 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 186
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
           H ND +VL  +CW++SYL DG N++I+ V++ GV P+LV+LLG     ++TPALR +GNI
Sbjct: 187 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 246
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
           VTG D QTQ +I+ GA+     +L  N                TAG ++QIQ V++ GL+
Sbjct: 247 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 305
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTV 361
             +V +L  A+F T+KEAAWAI+N TSGGT EQI +LV  G ++PL +LL   D +I+ V
Sbjct: 306 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 365
Query: 362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421
            L  + NI +  E        +G+  + +  +EE GGL+KIE LQ H+N  +++ S+ + 
Sbjct: 366 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 418
Query: 422 KTYW 425
           + Y+
Sbjct: 419 EKYF 422

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 125/288 (43%), Gaps = 21/288 (7%)
Query: 151 ATRTLSNFCRGKPEPPFDQVRPA--LPALAQLVHSNDEDVLTY-ACWSLSYLADGTNDKI 207
           AT+        + +PP D +  A  +P     +   D   + + + W+L+ +A GT+++ 
Sbjct: 22  ATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 81
Query: 208 QAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDML-V 266
           +AV++ G  P  + LL  P   +   A+  +GNI          +I HGA+  LL +L V
Sbjct: 82  KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAV 141
Query: 267 HNHXXXXXXXXXXXXXXXTAGNREQIQAV-IDA--GLIRPIVNLLQNAEFDTKKEAAWAI 323
            +                +   R +  A  +DA   ++  +V LL + + +   ++ WAI
Sbjct: 142 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 201
Query: 324 SNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTI 383
           S  T G   E+I+ +V++G V  L  LL  ++  IVT  L             R +G  +
Sbjct: 202 SYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPAL-------------RAIGNIV 247
Query: 384 GDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNEE 431
              ++  Q V +AG L    +L ++    I +++         GR ++
Sbjct: 248 TGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQ 295

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score =  368 bits (945), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/445 (43%), Positives = 278/445 (62%), Gaps = 13/445 (2%)
Query: 7   LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEA 66
           +V G+ S +   QL+AT  +RKLLS ++ PPI+ +I++G++P+FV FL R D   +Q+E+
Sbjct: 13  IVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFES 72
Query: 67  AWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 126
           AW L NIASGTSE T  V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    RDLV
Sbjct: 73  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLV 132
Query: 127 LSQGALIPLLAELNEHAKLSM----LRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLV 181
           +  GA+ PLLA L      S+    LRN T TLSN CR K P PP D V   LP L +L+
Sbjct: 133 IKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLL 192
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
           H +D +VL   CW++SYL DG N++I  V++ GV P+LV+LLG     ++TPALR +GNI
Sbjct: 193 HHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNI 252
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
           VTG D QTQ +I+ GA+     +L  N                TAG ++QIQ V++ GL+
Sbjct: 253 VTGTDEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 311
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTV 361
             +V++L  A+F T+KEA WA++N TSGGT EQI +LV  G ++PL +LL   D +I+ V
Sbjct: 312 PFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILV 371
Query: 362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421
            L  + NI +  E        +G+  + +  +EE GGL+KIE LQ+H+N  +++ S+ + 
Sbjct: 372 ILDAISNIFQAAEK-------LGETEKLSIMIEECGGLDKIEALQNHENESVYKASLSLI 424
Query: 422 KTYWCGRNEEEDALGSNVITNGKVY 446
           + Y+    EE+  +     + G  +
Sbjct: 425 EKYFSVEEEEDQNVVPETTSEGYTF 449

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score =  368 bits (945), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/424 (45%), Positives = 271/424 (63%), Gaps = 13/424 (3%)
Query: 7   LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEA 66
           +V G+ S++   QL+AT  +RKLLS ++ PPI+ +I++G++P+FV FL + D   +Q+E+
Sbjct: 38  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 97
Query: 67  AWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 126
           AW L NIASGTSE T  V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    RDLV
Sbjct: 98  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 157
Query: 127 LSQGALIPLLAELN----EHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLV 181
           +  GA+ PLLA L            LRN T TLSN CR K P PP D V   LP L +L+
Sbjct: 158 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 217
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
           H ND +VL  +CW++SYL DG N++I+ V++ GV P+LV+LLG     ++TPALR +GNI
Sbjct: 218 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 277
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
           VTG D QTQ +I+ GA+     +L  N                TAG ++QIQ V++ GL+
Sbjct: 278 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 336
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTV 361
             +V +L  A+F T+KEAAWAI+N TSGGT EQI +LV  G ++PL +LL   D +I+ V
Sbjct: 337 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 396
Query: 362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421
            L  + NI +  E        +G+  + +  +EE GGL+KIE LQ H+N  +++ S+ + 
Sbjct: 397 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 449
Query: 422 KTYW 425
           + Y+
Sbjct: 450 EKYF 453

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 125/288 (43%), Gaps = 21/288 (7%)
Query: 151 ATRTLSNFCRGKPEPPFDQVRPA--LPALAQLVHSNDEDVLTY-ACWSLSYLADGTNDKI 207
           AT+        + +PP D +  A  +P     +   D   + + + W+L+ +A GT+++ 
Sbjct: 53  ATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 112
Query: 208 QAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDML-V 266
           +AV++ G  P  + LL  P   +   A+  +GNI          +I HGA+  LL +L V
Sbjct: 113 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAV 172
Query: 267 HNHXXXXXXXXXXXXXXXTAGNREQIQAV-IDA--GLIRPIVNLLQNAEFDTKKEAAWAI 323
            +                +   R +  A  +DA   ++  +V LL + + +   ++ WAI
Sbjct: 173 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 232
Query: 324 SNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTI 383
           S  T G   E+I+ +V++G V  L  LL  ++  IVT  L             R +G  +
Sbjct: 233 SYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPAL-------------RAIGNIV 278
Query: 384 GDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNEE 431
              ++  Q V +AG L    +L ++    I +++         GR ++
Sbjct: 279 TGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQ 326

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score =  366 bits (940), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/445 (43%), Positives = 276/445 (62%), Gaps = 13/445 (2%)
Query: 7   LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEA 66
           +V G+ S++   QL+AT  +RKLLS ++ PPI+ +I++G++P+FV FL + D   +Q+E+
Sbjct: 81  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 140
Query: 67  AWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 126
           AW L NIASGTSE T  V+D GA+P F+ LL+SP   + EQAVWALGN+AG     RDLV
Sbjct: 141 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLV 200
Query: 127 LSQGALIPLLAELN----EHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLV 181
           +  GA+ PLLA L            LRN T TLSN CR K P PP D V   LP L +L+
Sbjct: 201 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 260
Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
           H ND +VL  +CW++SYL DG N++I+ V++ GV P+LV+LLG     ++TPALR +GNI
Sbjct: 261 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320
Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLI 301
           VTG D QTQ +I+ GA+     +L  N                TAG ++QIQ V++ GL+
Sbjct: 321 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 379
Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTV 361
             +V +L  A+F T+K AAWAI+N TSGGT EQI +LV  G ++PL +LL   D +I+ V
Sbjct: 380 PFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 439
Query: 362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421
            L  + NI +  E        +G+  + +  +EE GGL+KIE LQ H+N  +++ S+ + 
Sbjct: 440 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 492
Query: 422 KTYWCGRNEEEDALGSNVITNGKVY 446
           + Y+    EE+  +     + G  +
Sbjct: 493 EKYFSVEEEEDQNVVPETTSEGFAF 517

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  137 bits (346), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/251 (35%), Positives = 131/251 (52%), Gaps = 15/251 (5%)
Query: 174 LPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTP 233
           LP + Q ++S+D      A    S +    N++IQAVI+AG  P LV+LL  P+  +L  
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 234 ALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQ 293
           AL  + NI +G + Q Q +I+ GA+P L+ +L   +               + GN EQIQ
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQ 132
Query: 294 AVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC 353
           AVIDAG +  +V LL +      +EA WA+SN  SGG  EQI+ ++  G +  L  LL  
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQAVIDAGALPALVQLLSS 191
Query: 354 SDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEI 413
            + +I+   L  L NI   G             N+  Q V+EAG LEK+E LQSH+N +I
Sbjct: 192 PNEQILQEALWALSNIASGG-------------NEQKQAVKEAGALEKLEQLQSHENEKI 238
Query: 414 HEKSVKIFKTY 424
            +++ +  +  
Sbjct: 239 QKEAQEALEKL 249

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score =  116 bits (290), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/186 (37%), Positives = 102/186 (54%), Gaps = 3/186 (1%)
Query: 174 LPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTP 233
           LP + Q ++S D+  L  A   LS +A G N++IQAVI+AG  P LV+LL  P+  +L  
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 234 ALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQ 293
           AL  + NI +G + Q Q +I+ GA+P L+ +L   +               + GN EQIQ
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQ 132
Query: 294 AVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC 353
           AVIDAG +  +V LL +      +EA WA+SN  SGG ++  K  V+E   +P  + L  
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--KQAVKEAGAEPALEQLQS 190
Query: 354 SDPEIV 359
           S  E +
Sbjct: 191 SPNEKI 196

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score = 98.2 bits (243), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 101/207 (48%), Gaps = 15/207 (7%)
Query: 216 CPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXX 275
            P++V+ L  P    L  ALR +  I +G + Q Q +I+ GA+P L+ +L   +      
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 276 XXXXXXXXXTAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQI 335
                    + GN EQIQAVIDAG +  +V LL +      +EA WA+SN  SGG  EQI
Sbjct: 74  ALWALSNIASGGN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQI 131
Query: 336 KHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEE 395
           + ++  G +  L  LL   + +I+   L  L NI   G             N+  Q V+E
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------------NEQKQAVKE 178
Query: 396 AGGLEKIENLQSHDNNEIHEKSVKIFK 422
           AG    +E LQS  N +I +++ +  +
Sbjct: 179 AGAEPALEQLQSSPNEKIQKEAQEALE 205

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 285 TAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCV 344
            +G  EQIQAVIDAG +  +V LL +      +EA WA+SN  SGG  EQI+ ++  G +
Sbjct: 40  ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQAVIDAGAL 98
Query: 345 KPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIEN 404
             L  LL   + +I+   L  L NI   G             N+  Q V +AG L  +  
Sbjct: 99  PALVQLLSSPNEQILQEALWALSNIASGG-------------NEQIQAVIDAGALPALVQ 145
Query: 405 LQSHDNNEIHEKSVKIFKTYWCGRNEEEDAL 435
           L S  N +I ++++        G NE++ A+
Sbjct: 146 LLSSPNEQILQEALWALSNIASGGNEQKQAV 176

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  112 bits (279), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 100/178 (56%), Gaps = 4/178 (2%)
Query: 174 LPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTP 233
           LP + Q ++S D+  L  A   LS +A G N++IQAVI+AG  P LV+LL  P+  +L  
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 234 ALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQ 293
           AL  + NI +G + Q Q +I+ GA+P L+ +L   +               + GN EQIQ
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQ 132
Query: 294 AVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVRE-GCVKPLCDL 350
           AVIDAG +  +V LL +      +EA WA+SN  SGG ++  K  V+E G ++ L  L
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--KQAVKEAGALEKLEQL 188

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/209 (33%), Positives = 106/209 (50%), Gaps = 15/209 (7%)
Query: 216 CPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXX 275
            P++V+ L  P    L  ALR +  I +G + Q Q +I+ GA+P L+ +L   +      
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 276 XXXXXXXXXTAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQI 335
                    + GN EQIQAVIDAG +  +V LL +      +EA WA+SN  SGG  EQI
Sbjct: 74  ALWALSNIASGGN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQI 131
Query: 336 KHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEE 395
           + ++  G +  L  LL   + +I+   L  L NI   G             N+  Q V+E
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------------NEQKQAVKE 178
Query: 396 AGGLEKIENLQSHDNNEIHEKSVKIFKTY 424
           AG LEK+E LQSH+N +I +++ +  +  
Sbjct: 179 AGALEKLEQLQSHENEKIQKEAQEALEKL 207

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 285 TAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCV 344
            +G  EQIQAVIDAG +  +V LL +      +EA WA+SN  SGG  EQI+ ++  G +
Sbjct: 40  ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQAVIDAGAL 98
Query: 345 KPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIEN 404
             L  LL   + +I+   L  L NI   G             N+  Q V +AG L  +  
Sbjct: 99  PALVQLLSSPNEQILQEALWALSNIASGG-------------NEQIQAVIDAGALPALVQ 145
Query: 405 LQSHDNNEIHEKSVKIFKTYWCGRNEEEDAL 435
           L S  N +I ++++        G NE++ A+
Sbjct: 146 LLSSPNEQILQEALWALSNIASGGNEQKQAV 176

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/178 (36%), Positives = 96/178 (53%), Gaps = 4/178 (2%)
Query: 174 LPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTP 233
           LP + Q ++S+D      A    S +    N++IQAVI+AG  P LV+LL  P+  +L  
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 234 ALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQ 293
           AL  + NI +G + Q Q +I+ GA+P L+ +L   +               + GN EQIQ
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQ 132
Query: 294 AVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVRE-GCVKPLCDL 350
           AVIDAG +  +V LL +      +EA WA+SN  SGG ++  K  V+E G ++ L  L
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--KQAVKEAGALEKLEQL 188

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 101/207 (48%), Gaps = 15/207 (7%)
Query: 216 CPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXX 275
            P++ + L          A R    I++  + Q Q +I+ GA+P L+ +L   +      
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 276 XXXXXXXXXTAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQI 335
                    + GN EQIQAVIDAG +  +V LL +      +EA WA+SN  SGG  EQI
Sbjct: 74  ALWALSNIASGGN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQI 131
Query: 336 KHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEE 395
           + ++  G +  L  LL   + +I+   L  L NI   G             N+  Q V+E
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------------NEQKQAVKE 178
Query: 396 AGGLEKIENLQSHDNNEIHEKSVKIFK 422
           AG LEK+E LQSH+N +I +++ +  +
Sbjct: 179 AGALEKLEQLQSHENEKIQKEAQEALE 205

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 74/149 (49%), Gaps = 15/149 (10%)
Query: 287 GNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKP 346
           GN EQIQAVIDAG +  +V LL +      +EA WA+SN  SGG  EQI+ ++  G +  
Sbjct: 43  GN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQAVIDAGALPA 100
Query: 347 LCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQ 406
           L  LL   + +I+   L  L NI   G             N+  Q V +AG L  +  L 
Sbjct: 101 LVQLLSSPNEQILQEALWALSNIASGG-------------NEQIQAVIDAGALPALVQLL 147
Query: 407 SHDNNEIHEKSVKIFKTYWCGRNEEEDAL 435
           S  N +I ++++        G NE++ A+
Sbjct: 148 SSPNEQILQEALWALSNIASGGNEQKQAV 176

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 108/223 (48%), Gaps = 5/223 (2%)
Query: 149 RNATRTLSNFCRGKPEPPFDQVRPA--LPALAQLVHSNDEDVLTYACWSLSYLADGTNDK 206
           + A R L+    G P      +  A  +  L +L+ S D +V   A  +L+ +A G ++ 
Sbjct: 20  KEAARDLAEIASG-PASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 78
Query: 207 IQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLV 266
           I+A+++AG    LV+LL      V   A R + NI +G D   + I++ G V  L+ +L 
Sbjct: 79  IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 138
Query: 267 HNHXXXXXXXXXXXXXXXTAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNA 326
                             + G  E I+A++DAG +  +V LL + + + +KEAA A++N 
Sbjct: 139 STDSEVQKEAARALANIAS-GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 197
Query: 327 TSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENI 369
            SG T   IK +V  G V+ L  LL  +D E+       LENI
Sbjct: 198 ASGPTS-AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI 239

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 116/251 (46%), Gaps = 15/251 (5%)
Query: 177 LAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALR 236
           L +L+ S D +    A   L+ +A G    I+A+++AG    LV+LL      V   A R
Sbjct: 7   LVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 66
Query: 237 TVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHXXXXXXXXXXXXXXXTAGNREQIQAVI 296
            + NI +G D   + I++ G V  L+ +L                   + G  E I+A++
Sbjct: 67  ALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPDEAIKAIV 125
Query: 297 DAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDP 356
           DAG +  +V LL + + + +KEAA A++N  S G  E IK +V  G V+ L  LL  +D 
Sbjct: 126 DAGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPDEAIKAIVDAGGVEVLVKLLTSTDS 184
Query: 357 EIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEK 416
           E+               EA R +           + + +AGG+E ++ L +  ++E+ ++
Sbjct: 185 EVQK-------------EAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKE 231
Query: 417 SVKIFKTYWCG 427
           + +  +    G
Sbjct: 232 AQRALENIKSG 242

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 72/145 (49%), Gaps = 14/145 (9%)
Query: 286 AGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVK 345
           +G    I+A++DAG +  +V LL + + + +KEAA A++N  SG   E IK +V  G V+
Sbjct: 31  SGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVE 89
Query: 346 PLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENL 405
            L  LL  +D E+               EA R +       ++  + + +AGG+E +  L
Sbjct: 90  VLVKLLTSTDSEVQK-------------EAARALANIASGPDEAIKAIVDAGGVEVLVKL 136
Query: 406 QSHDNNEIHEKSVKIFKTYWCGRNE 430
            +  ++E+ +++ +       G +E
Sbjct: 137 LTSTDSEVQKEAARALANIASGPDE 161

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	446
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	0.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	6e-53
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-175
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	5e-49
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-171
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	4e-50
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	5e-15
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	4e-06
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-106
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-72
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-69
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-66
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-60
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-55
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	9e-30
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-105
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	8e-80
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-73
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-65
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	6e-60
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-55
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-31
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	5e-90
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-85
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	6e-55
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-19
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-12
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-88
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-72
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-63
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	4e-81
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	5e-62
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-52
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-14
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-68
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-59
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-56
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-20
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-56
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-25
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-24
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-18
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-09
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-55
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-51
3nmz_A	458	APC variant protein; protein-protein complex, arma	5e-50
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-32
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	7e-55
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-45
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-32
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	3e-21
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-40
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	3e-38
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	8e-33
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-27
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-19
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	4e-35
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-20
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-10
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	7e-04
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	4e-20
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	4e-12
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	7e-14
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	4e-08
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	2e-07
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	3e-13
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	2e-12
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	3e-05
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	7e-13
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-12
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-08
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	8e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	3e-10
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	8e-07
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	2e-09
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	9e-06
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	5e-09
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	9e-05
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	1e-08
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	2e-08
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	1e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	7e-05
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	8e-05
3grl_A	651	General vesicular transport factor P115; vesicle t	3e-08
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	1e-07
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	3e-07
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	1e-06

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  511 bits (1317), Expect = 0.0
 Identities = 243/435 (55%), Positives = 302/435 (69%), Gaps = 7/435 (1%)

Query: 2   GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQS-GVVPRFVEFLMREDYP 60
                ++  ++S     QL AT   RKLLS + NPPI++VI + GVV RFVEFL R++  
Sbjct: 20  VITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENC 79

Query: 61  QLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP 120
            LQ+E+AWVL NIASG S  T +VI  GAVPIF++LLSS  +DV+EQAVWALGN+AGDS 
Sbjct: 80  TLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDST 139

Query: 121 RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPP-FDQVRPALPALAQ 179
            CRD VL    L PLL   ++  +L+M RNA   LSN CRGK  PP F +V P L  L+ 
Sbjct: 140 MCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSW 199

Query: 180 LVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVG 239
           L+  +D DVL  ACW+LSYL+DG NDKIQAVI+AGVC RLVELL H    V++PALR VG
Sbjct: 200 LLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVG 259

Query: 240 NIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAG 299
           NIVTGDD QTQ I+N  A+  LL +L    E  IKKE  W ISNITAGNR QIQ VIDA 
Sbjct: 260 NIVTGDDIQTQVILNCSALQSLLHLLSSPKES-IKKEACWTISNITAGNRAQIQTVIDAN 318

Query: 300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIV 359
           +   ++++LQ AEF T+KEAAWAI+NATSGG+ EQIK+LV  GC+KPLCDLL   D +IV
Sbjct: 319 IFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV 378

Query: 360 TVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVK 419
            V L GLENIL++GE E         +N Y   +EEA GL+KIE LQSH+N EI++K+  
Sbjct: 379 QVALNGLENILRLGEQEAK--RNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFD 436

Query: 420 IFKTYWCGRNEEEDA 434
           + + Y+    E+ED+
Sbjct: 437 LIEHYFGT--EDEDS 449

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  182 bits (464), Expect = 6e-53
 Identities = 64/365 (17%), Positives = 137/365 (37%), Gaps = 19/365 (5%)

Query: 71  INIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVA--GDSPRCRDLVLS 128
           +        N  +          ++++ S S + +  A      +     +P   +++ +
Sbjct: 3   MGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIST 62

Query: 129 QGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRP-ALPALAQLVHSNDED 187
            G +   +  L      ++   +   L+N   G        ++  A+P   +L+ S  ED
Sbjct: 63  PGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFED 122

Query: 188 VLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSP-SVLTPALRTVGNIVTGDD 246
           V   A W+L  +A  +      V++  + P L++L    +  ++   A+  + N+  G  
Sbjct: 123 VQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKS 182

Query: 247 FQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVN 306
              +       +  L  +L  +  + +  +  W +S ++ G  ++IQAVIDAG+ R +V 
Sbjct: 183 PPPEFAKVSPCLNVLSWLLFVSDTD-VLADACWALSYLSDGPNDKIQAVIDAGVCRRLVE 241

Query: 307 LLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGL 366
           LL + ++     A  A+ N  + G   Q + ++    ++ L  LL      I       +
Sbjct: 242 LLMHNDYKVVSPALRAVGNIVT-GDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTI 300

Query: 367 ENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWC 426
            NI            T G+  Q  Q V +A     + ++         +++         
Sbjct: 301 SNI------------TAGNRAQ-IQTVIDANIFPALISILQTAEFRTRKEAAWAITNATS 347

Query: 427 GRNEE 431
           G + E
Sbjct: 348 GGSAE 352

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  499 bits (1285), Expect = e-175
 Identities = 236/442 (53%), Positives = 303/442 (68%), Gaps = 10/442 (2%)

Query: 2   GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ 61
              P +   + SDD   QL AT   R++LS +  PPI+ VIQ+GVVPR VEF+       
Sbjct: 87  QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 146

Query: 62  LQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPR 121
           LQ EAAW L NIASGTS  T VV+D  AVP+F++LL + S +V+EQA+WALGNVAGDS  
Sbjct: 147 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 206

Query: 122 CRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQL 180
            RD VL   A+ P+L   N + K S++R AT TLSN CRGK P+P +  V  ALP LA+L
Sbjct: 207 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 265

Query: 181 VHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN 240
           ++S D + L  ACW++SYL+DG  + IQAVI+  +  RLVELL H S  V TPALR VGN
Sbjct: 266 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 325

Query: 241 IVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGL 300
           IVTG+D QTQ +IN G +P L  +L    E  IKKE  W ISNITAGN EQIQAVIDA L
Sbjct: 326 IVTGNDLQTQVVINAGVLPALRLLLSSPKEN-IKKEACWTISNITAGNTEQIQAVIDANL 384

Query: 301 IRPIVNLLQNAEFDTKKEAAWAISNATSGGT--QEQIKHLVREGCVKPLCDLLLCSDPEI 358
           I P+V LL+ AE+ TKKEA WAISNA+SGG    + I++LV +GC+KPLCDLL  +D  I
Sbjct: 385 IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 444

Query: 359 VTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSV 418
           + V L  LENILK+GEA++       ++N+ A F+E+AGG+EKI N Q ++N++I+EK+ 
Sbjct: 445 IEVTLDALENILKMGEADKEARGL--NINENADFIEKAGGMEKIFNCQQNENDKIYEKAY 502

Query: 419 KIFKTYWCGRNEEEDALGSNVI 440
           KI +TY+    EEEDA+   + 
Sbjct: 503 KIIETYF---GEEEDAVDETMA 521

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  174 bits (441), Expect = 5e-49
 Identities = 68/349 (19%), Positives = 130/349 (37%), Gaps = 17/349 (4%)

Query: 74  ASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVA-GDSPRCRDLVLSQGAL 132
           +S +++          +P   + L+S     +  A      +   +     D+V+  G +
Sbjct: 73  SSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVV 132

Query: 133 IPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQV-RPALPALAQLVHSNDEDVLTY 191
             L+  + E+    +   A   L+N   G        V   A+P   QL+++   +V   
Sbjct: 133 PRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQ 192

Query: 192 ACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQC 251
           A W+L  +A  + D    V++      ++ L     PS++  A  T+ N+  G   Q   
Sbjct: 193 AIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDW 252

Query: 252 IINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA 311
            +   A+P L  ++     E    +  W IS ++ G +E IQAVID  + + +V LL + 
Sbjct: 253 SVVSQALPTLAKLIYSMDTE-TLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE 311

Query: 312 EFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILK 371
               +  A  A+ N  + G   Q + ++  G +  L  LL      I       + NI  
Sbjct: 312 STLVQTPALRAVGNIVT-GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNIT- 369

Query: 372 VGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKI 420
                           +  Q V +A  +  +  L      +  +++   
Sbjct: 370 ------------AGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWA 406

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  488 bits (1258), Expect = e-171
 Identities = 200/447 (44%), Positives = 286/447 (63%), Gaps = 13/447 (2%)

Query: 2   GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ 61
            S   +V G+ S++   QL+AT  +RKLLS ++ PPI+ +I++G++P+FV FL + D   
Sbjct: 57  WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP 116

Query: 62  LQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPR 121
           +Q+E+AW L NIASGTSE T  V+D GA+P F+ LL+SP   + EQAVWALGN+AGD   
Sbjct: 117 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 176

Query: 122 CRDLVLSQGALIPLLAELNEH----AKLSMLRNATRTLSNFCRGKPEPP-FDQVRPALPA 176
            RDLV+  GA+ PLLA L            LRN T TLSN CR K   P  D V   LP 
Sbjct: 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 236

Query: 177 LAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALR 236
           L +L+H ND +VL  +CW++SYL DG N++I+ V++ GV P+LV+LLG     ++TPALR
Sbjct: 237 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 296

Query: 237 TVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVI 296
            +GNIVTG D QTQ +I+ GA+     +L +     I+KE +W +SNITAG ++QIQ V+
Sbjct: 297 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTN-IQKEATWTMSNITAGRQDQIQQVV 355

Query: 297 DAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDP 356
           + GL+  +V +L  A+F T+KEAAWAI+N TSGGT EQI +LV  G ++PL +LL   D 
Sbjct: 356 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 415

Query: 357 EIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEK 416
           +I+ V L  + NI +  E        +G+  + +  +EE GGL+KIE LQ H+N  +++ 
Sbjct: 416 KIIQVILDAISNIFQAAEK-------LGETEKLSIMIEECGGLDKIEALQRHENESVYKA 468

Query: 417 SVKIFKTYWCGRNEEEDALGSNVITNG 443
           S+ + + Y+    EE+  +     + G
Sbjct: 469 SLNLIEKYFSVEEEEDQNVVPETTSEG 495

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  176 bits (448), Expect = 4e-50
 Identities = 78/367 (21%), Positives = 137/367 (37%), Gaps = 22/367 (5%)

Query: 72  NIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVA-GDSPRCRDLVLSQG 130
           +  +     +N    + +V   VK ++S + + + QA  A   +   +     D ++  G
Sbjct: 41  DDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAG 100

Query: 131 ALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQV-RPALPALAQLVHSNDEDVL 189
            +   ++ L +     +   +   L+N   G  E     V   A+PA   L+ S    + 
Sbjct: 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS 160

Query: 190 TYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSP-----SVLTPALRTVGNIVTG 244
             A W+L  +A   +     VI+ G    L+ LL  P         L     T+ N+   
Sbjct: 161 EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 220

Query: 245 DDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPI 304
            +           +P L+ +L HN  E +  +  W IS +T G  E+I+ V+  G++  +
Sbjct: 221 KNPAPPLDAVEQILPTLVRLLHHNDPE-VLADSCWAISYLTDGPNERIEMVVKKGVVPQL 279

Query: 305 VNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLI 364
           V LL   E      A  AI N  + GT EQ + ++  G +     LL      I      
Sbjct: 280 VKLLGATELPIVTPALRAIGNIVT-GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW 338

Query: 365 GLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTY 424
            + NI            T G  +Q  Q V   G +  +  + S  + +  +++      Y
Sbjct: 339 TMSNI------------TAGRQDQ-IQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 385

Query: 425 WCGRNEE 431
             G   E
Sbjct: 386 TSGGTVE 392

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 76.2 bits (187), Expect = 5e-15
 Identities = 39/188 (20%), Positives = 69/188 (36%), Gaps = 15/188 (7%)

Query: 233 PALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQI 292
           P L T  +     D  +     + +V  ++  +  N+ E   +        ++   +  I
Sbjct: 34  PDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPI 93

Query: 293 QAVIDAGLIRPIVNLLQNAEF-DTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLL 351
             +I AGLI   V+ L   +    + E+AWA++N  S GT EQ K +V  G +     LL
Sbjct: 94  DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIAS-GTSEQTKAVVDGGAIPAFISLL 152

Query: 352 LCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNN 411
                 I    +  L NI              GD + +   V + G ++ +  L +  + 
Sbjct: 153 ASPHAHISEQAVWALGNI-------------AGDGSAFRDLVIKHGAIDPLLALLAVPDL 199

Query: 412 EIHEKSVK 419
                   
Sbjct: 200 STLACGYL 207

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 48.1 bits (114), Expect = 4e-06
 Identities = 21/150 (14%), Positives = 46/150 (30%), Gaps = 14/150 (9%)

Query: 270 EEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSG 329
            + +         +  A              +  IV  + +   +++ +A  A     S 
Sbjct: 28  RQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSR 87

Query: 330 GTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIG-LENILKVGEAERNMGTTIGDVNQ 388
             Q  I +++R G +      L  +D   +       L NI                  +
Sbjct: 88  EKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS-------------E 134

Query: 389 YAQFVEEAGGLEKIENLQSHDNNEIHEKSV 418
             + V + G +    +L +  +  I E++V
Sbjct: 135 QTKAVVDGGAIPAFISLLASPHAHISEQAV 164

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  327 bits (840), Expect = e-106
 Identities = 65/428 (15%), Positives = 137/428 (32%), Gaps = 18/428 (4%)

Query: 5   PALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQY 64
            A+V  + + ++      T  +   LS  R   +  + +SG +P  V+ L       + +
Sbjct: 59  SAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA-IFKSGGIPALVKMLGSPV-DSVLF 116

Query: 65  EAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD 124
            A   L N+          V   G +   V LL+  +          L  +A  +   + 
Sbjct: 117 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 176

Query: 125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSN 184
           ++L+ G    L+  +  +    +L   +R L          P       + AL   +   
Sbjct: 177 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP 236

Query: 185 DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTG 244
            + ++    W+L  L+D    +       G+   LV+LLG    +V+T A   + N+   
Sbjct: 237 SQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 293

Query: 245 DDFQTQCIINHGAVPYLLDMLVHNHE-EIIKKEISWIISNITAGNRE---QIQAVIDAGL 300
           +      +   G +  L+  ++   + E I +     + ++T+ ++E      AV     
Sbjct: 294 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYG 353

Query: 301 IRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVT 360
           +  +V LL         +A   +    +         L  +G +  L  LL+ +  +   
Sbjct: 354 LPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDTQR 412

Query: 361 VCLIGLENILKVGEAERNMGT--------TIGDVNQYAQFVEEAGGLEKIENLQSHDNNE 412
              +G      V                  +         +     +     L       
Sbjct: 413 RTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIEN 472

Query: 413 IHEKSVKI 420
           I   +  +
Sbjct: 473 IQRVAAGV 480

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  238 bits (608), Expect = 4e-72
 Identities = 75/468 (16%), Positives = 149/468 (31%), Gaps = 47/468 (10%)

Query: 2   GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ 61
           G  PALV  + S  +S+   A T    LL       +  V  +G + + V  L+ +   +
Sbjct: 98  GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA-VRLAGGLQKMVA-LLNKTNVK 155

Query: 62  LQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSD-DVREQAVWALGNVAGDSP 120
                   L  +A G  E+  +++  G     V ++ + +   +       L  ++  S 
Sbjct: 156 FLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS 215

Query: 121 RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQL 180
             +  ++  G  +  L          +++N   TL N      +   + +   L  L QL
Sbjct: 216 -NKPAIVEAGG-MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQL 271

Query: 181 VHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELL--GHPSPSVLTPALRTV 238
           + S+D +V+T A   LS L          V + G    LV  +        +  PA+  +
Sbjct: 272 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331

Query: 239 GNIVTGDD---FQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAV 295
            ++ +           +  H  +P ++ +L       + K    +I N+ A        +
Sbjct: 332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL-ALCPANHAPL 390

Query: 296 IDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGG--------------------TQEQI 335
            + G I  +V LL  A  DT++  +   +                               
Sbjct: 391 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNR 450

Query: 336 KHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEE 395
             +     +     LL      I  V    L  + +  E               A+ +E 
Sbjct: 451 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE--------------AAEAIEA 496

Query: 396 AGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNEEEDALGSNVITNG 443
            G    +  L    N  +   +  +       + ++     S  +T+ 
Sbjct: 497 EGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSS 544

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  231 bits (591), Expect = 1e-69
 Identities = 79/423 (18%), Positives = 148/423 (34%), Gaps = 27/423 (6%)

Query: 1   LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYP 60
             + P L   +  +D  +  +A  +  +L   + +     +    +V   V  +   +  
Sbjct: 13  TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDV 71

Query: 61  QLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP 120
           +     A  L N+ S   E    +   G +P  VK+L SP D V   A+  L N+     
Sbjct: 72  ETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 130

Query: 121 RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRP-ALPALAQ 179
             +  V   G  +  +  L     +  L   T  L     G  E     +      AL  
Sbjct: 131 GAKMAVRLAGG-LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN 189

Query: 180 LVHS-NDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTV 238
           ++ +   E +L      L  L+  +++K  A++EAG    L   L  PS  ++   L T+
Sbjct: 190 IMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 248

Query: 239 GNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDA 298
            N+    D  T+     G +  L+ +L  +    +    + I+SN+T  N +    V   
Sbjct: 249 RNL---SDAATKQEGMEGLLGTLVQLLGSDDIN-VVTCAAGILSNLTCNNYKNKMMVCQV 304

Query: 299 GLIRPIVNLLQNA--EFDTKKEAAWAISNATSGGTQ--EQIKHLVREGCVKPLCDLLLCS 354
           G I  +V  +  A    D  + A  A+ + TS   +       +     +  +  LL   
Sbjct: 305 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP 364

Query: 355 DPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIH 414
               +    +GL   L +  A                 + E G + ++  L    + +  
Sbjct: 365 SHWPLIKATVGLIRNLALCPANH-------------APLREQGAIPRLVQLLVRAHQDTQ 411

Query: 415 EKS 417
            ++
Sbjct: 412 RRT 414

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  222 bits (568), Expect = 3e-66
 Identities = 64/389 (16%), Positives = 135/389 (34%), Gaps = 24/389 (6%)

Query: 35  NPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFV 94
           N   +  + +  +P   + L  ED   +  +AA ++  ++   +    ++     V   V
Sbjct: 4   NYQDDAELATRAIPELTKLLNDED-QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV 62

Query: 95  KLLSSPSD-DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATR 153
           + + + +D +        L N++         +   G  IP L ++      S+L  A  
Sbjct: 63  RTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGG-IPALVKMLGSPVDSVLFYAIT 120

Query: 154 TLSNFCRGKPEPPFDQVRP--ALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVI 211
           TL N    +       VR    L  +  L++  +   L      L  LA G  +    ++
Sbjct: 121 TLHNLLLHQEGAK-MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL 179

Query: 212 EAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEE 271
            +G    LV ++   +   L      V  +++        I+  G +  L   L    + 
Sbjct: 180 ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQR 239

Query: 272 IIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGT 331
            + +   W + N++    +Q       GL+  +V LL + + +    AA  +SN T    
Sbjct: 240 -LVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN- 294

Query: 332 QEQIKHLVREGCVKPLCDLLL--CSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQY 389
            +    + + G ++ L   +L      +I    +  L          R++ +   +    
Sbjct: 295 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL----------RHLTSRHQEAEMA 344

Query: 390 AQFVEEAGGLEKIENLQSHDNNEIHEKSV 418
              V    GL  +  L    ++    K+ 
Sbjct: 345 QNAVRLHYGLPVVVKLLHPPSHWPLIKAT 373

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  207 bits (529), Expect = 1e-60
 Identities = 65/352 (18%), Positives = 126/352 (35%), Gaps = 28/352 (7%)

Query: 70  LINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQ 129
           LIN         +  +   A+P   KLL+     V  +A   +  ++        ++ S 
Sbjct: 2   LIN------YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP 55

Query: 130 GALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVR-PALPALAQLVHSNDEDV 188
             +  ++  +     +   R    TL N      E      +   +PAL +++ S  + V
Sbjct: 56  QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSV 114

Query: 189 LTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQ 248
           L YA  +L  L         AV  AG   ++V LL   +   L      +  +  G+   
Sbjct: 115 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 174

Query: 249 TQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLL 308
              I+  G    L++++     E +    S ++  + +       A+++AG ++ +   L
Sbjct: 175 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHL 233

Query: 309 QNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLEN 368
            +      +   W + N +   T+        EG +  L  LL   D  +VT     L N
Sbjct: 234 TDPSQRLVQNCLWTLRNLSDAATK----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSN 289

Query: 369 ILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENL--QSHDNNEIHEKSV 418
           +            T  +       V + GG+E +     ++ D  +I E ++
Sbjct: 290 L------------TCNNYKN-KMMVCQVGGIEALVRTVLRAGDREDITEPAI 328

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  192 bits (490), Expect = 4e-55
 Identities = 64/368 (17%), Positives = 117/368 (31%), Gaps = 35/368 (9%)

Query: 1   LGSFPALVAGVWS-DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDY 59
            G   ALV  + +     L    + + + L     N P   ++++G +      L     
Sbjct: 181 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP--AIVEAGGMQALGLHLTDPS- 237

Query: 60  PQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDS 119
            +L     W L N++      T      G +   V+LL S   +V   A   L N+  ++
Sbjct: 238 QRLVQNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 294

Query: 120 PRCRDLVLSQGALIPLLAEL-NEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRP----AL 174
            + + +V   G +  L+  +     +  +   A   L +      E    Q        L
Sbjct: 295 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL 354

Query: 175 PALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPA 234
           P + +L+H      L  A   L             + E G  PRLV+LL           
Sbjct: 355 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 414

Query: 235 LRTVGNIVTGDDFQT---------------------QCIINHGAVPYLLDMLVHNHEEII 273
                     +  +                        I     +P  + +L    E I 
Sbjct: 415 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENI- 473

Query: 274 KKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQE 333
           ++  + ++  + A ++E  +A+   G   P+  LL +        AA  +   +    Q+
Sbjct: 474 QRVAAGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQD 532

Query: 334 QIKHLVRE 341
             K L  E
Sbjct: 533 YKKRLSVE 540

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  121 bits (304), Expect = 9e-30
 Identities = 68/358 (18%), Positives = 106/358 (29%), Gaps = 41/358 (11%)

Query: 2   GSFPALVAGVWSDDNSLQLEAT-TLSRKLLSFDRNPPIEKVIQSGVVPRFVEFL-MREDY 59
           G    LV  + SDD ++   A   LS   L+ +       V Q G +   V  +    D 
Sbjct: 263 GLLGTLVQLLGSDDINVVTCAAGILSN--LTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 320

Query: 60  PQLQYEAAWVLINIASGTSENT---NVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVA 116
             +   A   L ++ S   E     N V  H  +P+ VKLL  PS     +A   L    
Sbjct: 321 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 380

Query: 117 GDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPA--- 173
              P     +  QGA IP L +L   A     R  +   +     +     + V      
Sbjct: 381 ALCPANHAPLREQGA-IPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 439

Query: 174 -------------------LPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAG 214
                              +P   QL++S  E++   A   L  LA    +  +A+   G
Sbjct: 440 LHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEG 498

Query: 215 VCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIK 274
               L ELL   +  V T A   +  +      + Q      +V  L   L         
Sbjct: 499 ATAPLTELLHSRNEGVATYAAAVLFRMSED---KPQDYKKRLSVE-LTSSLFRTEPMAWN 554

Query: 275 KEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQ 332
           +     +     G     +         P      +  +         +     GG  
Sbjct: 555 ETADLGLDIGAQGEPLGYRQD------DPSYRSFHSGGYGQDALGMDPMMEHEMGGHH 606

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  322 bits (826), Expect = e-105
 Identities = 69/428 (16%), Positives = 143/428 (33%), Gaps = 18/428 (4%)

Query: 5   PALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQY 64
            A+V  + + ++      T  +   LS  R   +  + +SG +P  V+ L       + +
Sbjct: 62  SAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA-IFKSGGIPALVKMLGSPV-DSVLF 119

Query: 65  EAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD 124
            A   L N+          V   G +   V LL+  +          L  +A  +   + 
Sbjct: 120 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 179

Query: 125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSN 184
           ++L+ G    L+  +  +    +L   +R L          P       + AL   +   
Sbjct: 180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP 239

Query: 185 DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTG 244
            + ++    W+L  L+D    +       G+   LV+LLG    +V+T A   + N+   
Sbjct: 240 SQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296

Query: 245 DDFQTQCIINHGAVPYLLDMLVHNHE-EIIKKEISWIISNITAGNRE---QIQAVIDAGL 300
           +      +   G +  L+  ++   + E I +     + ++T+ ++E      AV     
Sbjct: 297 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYG 356

Query: 301 IRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVT 360
           +  +V LL         +A   +    +         L  +G +  L  LL+ +  +   
Sbjct: 357 LPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDTQR 415

Query: 361 VCLIGLENILKVGEA--ERNMGTTIGDVNQYAQFVE------EAGGLEKIENLQSHDNNE 412
              +G      V     E  +    G ++  A+ V           +     L       
Sbjct: 416 RTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIEN 475

Query: 413 IHEKSVKI 420
           I   +  +
Sbjct: 476 IQRVAAGV 483

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  255 bits (654), Expect = 8e-80
 Identities = 75/422 (17%), Positives = 144/422 (34%), Gaps = 25/422 (5%)

Query: 1   LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYP 60
             + P L   +  +D  +  +A  +  +L   + +     +    +V   V  +   +  
Sbjct: 16  TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDV 74

Query: 61  QLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP 120
           +     A  L N+ S   E    +   G +P  VK+L SP D V   A+  L N+     
Sbjct: 75  ETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 133

Query: 121 RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRP-ALPALAQ 179
             +  V   G  +  +  L     +  L   T  L     G  E     +      AL  
Sbjct: 134 GAKMAVRLAGG-LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN 192

Query: 180 LVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVG 239
           ++ +   + L +    +  +    +    A++EAG    L   L  PS  ++   L T+ 
Sbjct: 193 IMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 252

Query: 240 NIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAG 299
           N+    D  T+     G +  L+ +L  +    +    + I+SN+T  N +    V   G
Sbjct: 253 NL---SDAATKQEGMEGLLGTLVQLLGSDDIN-VVTCAAGILSNLTCNNYKNKMMVCQVG 308

Query: 300 LIRPIVNLLQNA--EFDTKKEAAWAISNATSGGTQ--EQIKHLVREGCVKPLCDLLLCSD 355
            I  +V  +  A    D  + A  A+ + TS   +       +     +  +  LL    
Sbjct: 309 GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS 368

Query: 356 PEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHE 415
              +    +GL   L +  A                 + E G + ++  L    + +   
Sbjct: 369 HWPLIKATVGLIRNLALCPANH-------------APLREQGAIPRLVQLLVRAHQDTQR 415

Query: 416 KS 417
           ++
Sbjct: 416 RT 417

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  238 bits (609), Expect = 3e-73
 Identities = 70/445 (15%), Positives = 139/445 (31%), Gaps = 47/445 (10%)

Query: 2   GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ 61
           G  PALV  + S  +S+   A T    LL       +  V  +G + + V  L+ +   +
Sbjct: 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA-VRLAGGLQKMVA-LLNKTNVK 158

Query: 62  LQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSD-DVREQAVWALGNVAGDSP 120
                   L  +A G  E+  +++  G     V ++ + +   +       L  ++    
Sbjct: 159 FLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CS 217

Query: 121 RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQL 180
             +  ++  G  +  L          +++N   TL N      +   + +   L  L QL
Sbjct: 218 SNKPAIVEAGG-MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQL 274

Query: 181 VHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELL--GHPSPSVLTPALRTV 238
           + S+D +V+T A   LS L          V + G    LV  +        +  PA+  +
Sbjct: 275 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334

Query: 239 GNIVTGDDF---QTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAV 295
            ++ +           +  H  +P ++ +L H        + +  +    A        +
Sbjct: 335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLL-HPPSHWPLIKATVGLIRNLALCPANHAPL 393

Query: 296 IDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGG--------------------TQEQI 335
            + G I  +V LL  A  DT++  +   +                               
Sbjct: 394 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNR 453

Query: 336 KHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEE 395
             +     +     LL      I  V    L  + +  E               A+ +E 
Sbjct: 454 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE--------------AAEAIEA 499

Query: 396 AGGLEKIENLQSHDNNEIHEKSVKI 420
            G    +  L    N  +   +  +
Sbjct: 500 EGATAPLTELLHSRNEGVATYAAAV 524

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  218 bits (557), Expect = 1e-65
 Identities = 60/348 (17%), Positives = 124/348 (35%), Gaps = 20/348 (5%)

Query: 73  IASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGAL 132
           + +  +   +  +   A+P   KLL+     V  +A   +  ++        ++ S   +
Sbjct: 2   VVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 61

Query: 133 IPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYA 192
             ++  +     +   R    TL N    +           +PAL +++ S  + VL YA
Sbjct: 62  SAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYA 121

Query: 193 CWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCI 252
             +L  L         AV  AG   ++V LL   +   L      +  +  G+      I
Sbjct: 122 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 181

Query: 253 INHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAE 312
           +  G    L++++     E +    S ++  + +       A+++AG ++ +   L +  
Sbjct: 182 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHLTDPS 240

Query: 313 FDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKV 372
               +   W + N +   T+        EG +  L  LL   D  +VT     L N+   
Sbjct: 241 QRLVQNCLWTLRNLSDAATK----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296

Query: 373 GEAERNMGTTIGDVNQYAQFVEEAGGLEKIENL--QSHDNNEIHEKSV 418
               +               V + GG+E +     ++ D  +I E ++
Sbjct: 297 NYKNK-------------MMVCQVGGIEALVRTVLRAGDREDITEPAI 331

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  203 bits (518), Expect = 6e-60
 Identities = 62/388 (15%), Positives = 133/388 (34%), Gaps = 22/388 (5%)

Query: 35  NPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFV 94
           N   +  + +  +P   + L  ED   +  +AA ++  ++   +    ++     V   V
Sbjct: 7   NYQDDAELATRAIPELTKLLNDED-QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV 65

Query: 95  KLLSSPSD-DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATR 153
           + + + +D +        L N++         +   G  IP L ++      S+L  A  
Sbjct: 66  RTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGG-IPALVKMLGSPVDSVLFYAIT 123

Query: 154 TLSNFCRGKPEPPFDQVRP-ALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIE 212
           TL N    +            L  +  L++  +   L      L  LA G  +    ++ 
Sbjct: 124 TLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA 183

Query: 213 AGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEI 272
           +G    LV ++   +   L      V  +++        I+  G +  L   L    +  
Sbjct: 184 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQR- 242

Query: 273 IKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQ 332
           + +   W + N++    +Q       GL+  +V LL + + +    AA  +SN T     
Sbjct: 243 LVQNCLWTLRNLSDAATKQEGM---EGLLGTLVQLLGSDDINVVTCAAGILSNLTC-NNY 298

Query: 333 EQIKHLVREGCVKPLCDLLL--CSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYA 390
           +    + + G ++ L   +L      +I    +  L          R++ +   +     
Sbjct: 299 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL----------RHLTSRHQEAEMAQ 348

Query: 391 QFVEEAGGLEKIENLQSHDNNEIHEKSV 418
             V    GL  +  L    ++    K+ 
Sbjct: 349 NAVRLHYGLPVVVKLLHPPSHWPLIKAT 376

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  190 bits (485), Expect = 4e-55
 Identities = 63/375 (16%), Positives = 117/375 (31%), Gaps = 36/375 (9%)

Query: 1   LGSFPALVAGVWS-DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDY 59
            G   ALV  + +     L    + + + L     N P   ++++G +       + +  
Sbjct: 184 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP--AIVEAGGMQALGL-HLTDPS 240

Query: 60  PQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDS 119
            +L     W L N++      T      G +   V+LL S   +V   A   L N+  ++
Sbjct: 241 QRLVQNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 297

Query: 120 PRCRDLVLSQGALIPLLAEL-NEHAKLSMLRNATRTLSNFCRGKPEPPFDQVR----PAL 174
            + + +V   G +  L+  +     +  +   A   L +      E    Q        L
Sbjct: 298 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL 357

Query: 175 PALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPA 234
           P + +L+H      L  A   L             + E G  PRLV+LL           
Sbjct: 358 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 417

Query: 235 LRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQA 294
                     +  + + I+                             +I A +      
Sbjct: 418 SMGGTQQQFVEGVRMEEIVEGCTGAL----------------------HILARDVHNRIV 455

Query: 295 VIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCS 354
           +     I   V LL +   + ++ AA  +        +E  + +  EG   PL +LL   
Sbjct: 456 IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSR 513

Query: 355 DPEIVTVCLIGLENI 369
           +  + T     L  +
Sbjct: 514 NEGVATYAAAVLFRM 528

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  124 bits (314), Expect = 3e-31
 Identities = 57/289 (19%), Positives = 93/289 (32%), Gaps = 30/289 (10%)

Query: 2   GSFPALVAGVWSDDNSLQLEAT-TLSRKLLSFDRNPPIEKVIQSGVVPRFVEFL-MREDY 59
           G    LV  + SDD ++   A   LS   L+ +       V Q G +   V  +    D 
Sbjct: 266 GLLGTLVQLLGSDDINVVTCAAGILSN--LTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 323

Query: 60  PQLQYEAAWVLINIASGTSEN---TNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVA 116
             +   A   L ++ S   E     N V  H  +P+ VKLL  PS     +A   L    
Sbjct: 324 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 383

Query: 117 GDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPA 176
              P     +  QGA IP L +L   A     R  +   +     +     + V     A
Sbjct: 384 ALCPANHAPLREQGA-IPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 442

Query: 177 LAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALR 236
           L  L                             +      P  V+LL  P  ++   A  
Sbjct: 443 LHILARDVHN--------------------RIVIRGLNTIPLFVQLLYSPIENIQRVAAG 482

Query: 237 TVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNIT 285
            +  +    +   + I   GA   L ++L   +E +     + ++  ++
Sbjct: 483 VLCELAQDKEAA-EAIEAEGATAPLTELLHSRNEGV-ATYAAAVLFRMS 529

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  273 bits (699), Expect = 5e-90
 Identities = 93/248 (37%), Positives = 138/248 (55%), Gaps = 15/248 (6%)

Query: 173 ALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLT 232
            LP + Q ++S+D      A    S +    N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 13  ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 233 PALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQI 292
            AL  + NI +G + Q Q +I+ GA+P L+ +L   +E+ I +E  W +SNI +G  EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQI 131

Query: 293 QAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLL 352
           QAVIDAG +  +V LL +      +EA WA+SN  SGG  EQI+ ++  G +  L  LL 
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQAVIDAGALPALVQLLS 190

Query: 353 CSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNE 412
             + +I+   L  L NI   G              +  Q V+EAG LEK+E LQSH+N +
Sbjct: 191 SPNEQILQEALWALSNIASGGN-------------EQKQAVKEAGALEKLEQLQSHENEK 237

Query: 413 IHEKSVKI 420
           I +++ + 
Sbjct: 238 IQKEAQEA 245

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  261 bits (669), Expect = 2e-85
 Identities = 88/243 (36%), Positives = 128/243 (52%), Gaps = 4/243 (1%)

Query: 2   GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ 61
              P +   + SDD   QL AT    ++LS D N  I+ VI +G +P  V+ L   +  Q
Sbjct: 12  SELPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPN-EQ 69

Query: 62  LQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPR 121
           +  EA W L NIASG +E    VID GA+P  V+LLSSP++ + ++A+WAL N+A     
Sbjct: 70  ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129

Query: 122 CRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVR-PALPALAQL 180
               V+  GA +P L +L       +L+ A   LSN   G  E     +   ALPAL QL
Sbjct: 130 QIQAVIDAGA-LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 188

Query: 181 VHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN 240
           + S +E +L  A W+LS +A G N++ QAV EAG   +L +L  H +  +   A   +  
Sbjct: 189 LSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248

Query: 241 IVT 243
           + +
Sbjct: 249 LQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  182 bits (463), Expect = 6e-55
 Identities = 89/245 (36%), Positives = 131/245 (53%), Gaps = 5/245 (2%)

Query: 127 LSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVR--PALPALAQLVHSN 184
              G+ +P + +      +    +ATR  S       E     V    ALPAL QL+ S 
Sbjct: 8   HHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQ-IQAVIDAGALPALVQLLSSP 66

Query: 185 DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTG 244
           +E +L  A W+LS +A G N++IQAVI+AG  P LV+LL  P+  +L  AL  + NI +G
Sbjct: 67  NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 126

Query: 245 DDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPI 304
            + Q Q +I+ GA+P L+ +L   +E+I  +E  W +SNI +G  EQIQAVIDAG +  +
Sbjct: 127 GNEQIQAVIDAGALPALVQLLSSPNEQI-LQEALWALSNIASGGNEQIQAVIDAGALPAL 185

Query: 305 VNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLI 364
           V LL +      +EA WA+SN  SG   EQ + +   G ++ L  L    + +I      
Sbjct: 186 VQLLSSPNEQILQEALWALSNIASG-GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQE 244

Query: 365 GLENI 369
            LE +
Sbjct: 245 ALEKL 249

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 87.0 bits (216), Expect = 1e-19
 Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 15/163 (9%)

Query: 256 GAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDT 315
             +P +   L  +  +  +   +   S I +   EQIQAVIDAG +  +V LL +     
Sbjct: 12  SELPQMTQQLNSDDMQE-QLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQI 70

Query: 316 KKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEA 375
            +EA WA+SN  S G  EQI+ ++  G +  L  LL   + +I+   L  L NI      
Sbjct: 71  LQEALWALSNIAS-GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI------ 123

Query: 376 ERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSV 418
                      N+  Q V +AG L  +  L S  N +I ++++
Sbjct: 124 -------ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 159

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 65.4 bits (160), Expect = 3e-12
 Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 14/130 (10%)

Query: 289 REQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLC 348
           R           +  +   L + +   +  A    S   S G  EQI+ ++  G +  L 
Sbjct: 2   RGSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGN-EQIQAVIDAGALPALV 60

Query: 349 DLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSH 408
            LL   + +I+   L  L NI              G   Q  Q V +AG L  +  L S 
Sbjct: 61  QLLSSPNEQILQEALWALSNI------------ASGGNEQ-IQAVIDAGALPALVQLLSS 107

Query: 409 DNNEIHEKSV 418
            N +I ++++
Sbjct: 108 PNEQILQEAL 117

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  285 bits (730), Expect = 1e-88
 Identities = 64/431 (14%), Positives = 137/431 (31%), Gaps = 18/431 (4%)

Query: 2   GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ 61
               A+V  + + ++      T+ +   LS  R   +  + +SG +P  V  L       
Sbjct: 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLA-IFKSGGIPALVNML-GSPVDS 249

Query: 62  LQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPR 121
           + + A   L N+          V   G +   V LL+  +          L  +A  +  
Sbjct: 250 VLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 309

Query: 122 CRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLV 181
            + ++L+ G    L+  +  +    +L   +R L          P       + AL   +
Sbjct: 310 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 369

Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
               + ++    W+L  L+D    +       G+   LV+LLG    +V+T A   + N+
Sbjct: 370 TDPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNL 426

Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHE-EIIKKEISWIISNITAGNRE---QIQAVID 297
              +      +   G +  L+  ++   + E I +     + ++T+ +++      AV  
Sbjct: 427 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRL 486

Query: 298 AGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPE 357
              +  +V LL         +A   +    +         L  +G +  L  LL+ +  +
Sbjct: 487 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQD 545

Query: 358 IVTVCLIGLENILKVGEAE-----RNMGTTIG---DVNQYAQFVEEAGGLEKIENLQSHD 409
                 +G      V               +            +     +     L    
Sbjct: 546 TQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSP 605

Query: 410 NNEIHEKSVKI 420
              I   +  +
Sbjct: 606 IENIQRVAAGV 616

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  241 bits (615), Expect = 4e-72
 Identities = 70/419 (16%), Positives = 140/419 (33%), Gaps = 27/419 (6%)

Query: 4   FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYP-QL 62
           F          D   Q   T   R      R     + +  G+     +F        Q 
Sbjct: 69  FNQSFNQEQVADIDGQYAMTRAQR-----VRAAMFPETLDEGMQIPSTQFDSAHPTNVQR 123

Query: 63  QYEAAWVLINIASG-TSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPR 121
             E + +L +      +   +  +   A+P   KLL+     V  +A   +  ++     
Sbjct: 124 LAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS 183

Query: 122 CRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLV 181
              ++ S   +  ++  +     +   R  + TL N    +           +PAL  ++
Sbjct: 184 RHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNML 243

Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
            S  + VL +A  +L  L         AV  AG   ++V LL   +   L      +  +
Sbjct: 244 GSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 303

Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLI 301
             G+      I+  G    L++++     E +    S ++  + +       A+++AG +
Sbjct: 304 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGM 362

Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTV 361
           + +   L +      +   W + N +   T+        EG +  L  LL   D  +VT 
Sbjct: 363 QALGLHLTDPSQRLVQNCLWTLRNLSDAATK----QEGMEGLLGTLVQLLGSDDINVVTC 418

Query: 362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENL--QSHDNNEIHEKSV 418
               L N+       +               V + GG+E +     ++ D  +I E ++
Sbjct: 419 AAGILSNLTCNNYKNK-------------MMVCQVGGIEALVRTVLRAGDREDITEPAI 464

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  217 bits (553), Expect = 3e-63
 Identities = 71/440 (16%), Positives = 133/440 (30%), Gaps = 36/440 (8%)

Query: 2   GSFPALVAGVWS-DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYP 60
           G   ALV  + +     L    + + + L     N P   ++++G +      L      
Sbjct: 318 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP--AIVEAGGMQALGLHLTDPS-Q 374

Query: 61  QLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP 120
           +L     W L N++      T      G +   V+LL S   +V   A   L N+  ++ 
Sbjct: 375 RLVQNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 431

Query: 121 RCRDLVLSQGALIPLLAEL-NEHAKLSMLRNATRTLSNFCRGKPEPPFDQVR----PALP 175
           + + +V   G +  L+  +     +  +   A   L +      +    Q        LP
Sbjct: 432 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLP 491

Query: 176 ALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPAL 235
            + +L+H      L  A   L             + E G  PRLV+LL            
Sbjct: 492 VVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTS 551

Query: 236 RTVGNIVTGDDFQT---------------------QCIINHGAVPYLLDMLVHNHEEIIK 274
                    +  +                        I     +P  + +L    E I +
Sbjct: 552 MGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENI-Q 610

Query: 275 KEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQ 334
           +  + ++  + A ++E  +A+   G   P+  LL +        AA  +   +    Q+ 
Sbjct: 611 RVAAGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDY 669

Query: 335 IKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVE 394
            K L  E     L      +  E   + L        +G  + +          Y Q   
Sbjct: 670 KKRLSVE-LTSSLFRTEPMTWNETGDLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDAM 728

Query: 395 EAGGLEKIENLQSHDNNEIH 414
               + + E    H   +  
Sbjct: 729 GMDPMMEHEMAGHHPGPDYP 748

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  248 bits (635), Expect = 4e-81
 Identities = 77/197 (39%), Positives = 113/197 (57%), Gaps = 2/197 (1%)

Query: 173 ALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLT 232
            LP + Q ++S D+  L  A   LS +A G N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 13  ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 233 PALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQI 292
            AL  + NI +G + Q Q +I+ GA+P L+ +L   +E+ I +E  W +SNI +G  EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQI 131

Query: 293 QAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLL 352
           QAVIDAG +  +V LL +      +EA WA+SN  SGG  EQ + +   G ++ L  L  
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQKQAVKEAGALEKLEQLQS 190

Query: 353 CSDPEIVTVCLIGLENI 369
             + +I       LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  199 bits (508), Expect = 5e-62
 Identities = 75/213 (35%), Positives = 112/213 (52%), Gaps = 15/213 (7%)

Query: 208 QAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVH 267
                    P++V+ L  P    L  ALR +  I +G + Q Q +I+ GA+P L+ +L  
Sbjct: 6   HHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS 65

Query: 268 NHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNAT 327
            +E+ I +E  W +SNI +G  EQIQAVIDAG +  +V LL +      +EA WA+SN  
Sbjct: 66  PNEQ-ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 124

Query: 328 SGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVN 387
           S G  EQI+ ++  G +  L  LL   + +I+   L  L NI   G              
Sbjct: 125 S-GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN------------- 170

Query: 388 QYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKI 420
           +  Q V+EAG LEK+E LQSH+N +I +++ + 
Sbjct: 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEA 203

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  174 bits (444), Expect = 2e-52
 Identities = 70/206 (33%), Positives = 103/206 (50%), Gaps = 3/206 (1%)

Query: 39  EKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLS 98
                   +P+ V+ L   D  Q    A   L  IASG +E    VID GA+P  V+LLS
Sbjct: 6   HHHHHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS 64

Query: 99  SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNF 158
           SP++ + ++A+WAL N+A         V+  GA +P L +L       +L+ A   LSN 
Sbjct: 65  SPNEQILQEALWALSNIASGGNEQIQAVIDAGA-LPALVQLLSSPNEQILQEALWALSNI 123

Query: 159 CRGKPEPPFDQVRP-ALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCP 217
             G  E     +   ALPAL QL+ S +E +L  A W+LS +A G N++ QAV EAG   
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALE 183

Query: 218 RLVELLGHPSPSVLTPALRTVGNIVT 243
           +L +L  H +  +   A   +  + +
Sbjct: 184 KLEQLQSHENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 70.7 bits (174), Expect = 3e-14
 Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 14/130 (10%)

Query: 289 REQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLC 348
           R           +  +V  L + +    + A   +S   S G  EQI+ ++  G +  L 
Sbjct: 2   RGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIAS-GGNEQIQAVIDAGALPALV 60

Query: 349 DLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSH 408
            LL   + +I+   L  L NI              G   Q  Q V +AG L  +  L S 
Sbjct: 61  QLLSSPNEQILQEALWALSNI------------ASGGNEQ-IQAVIDAGALPALVQLLSS 107

Query: 409 DNNEIHEKSV 418
            N +I ++++
Sbjct: 108 PNEQILQEAL 117

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  220 bits (563), Expect = 2e-68
 Identities = 54/326 (16%), Positives = 109/326 (33%), Gaps = 26/326 (7%)

Query: 44  SGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSD- 102
              + +     M          A  VL+ + S   E+ + + + G +    +LL    + 
Sbjct: 31  EPGMDQDKN-PMPAPVEHQICPAVCVLMKL-SFDEEHRHAMNELGGLQAIAELLQVDCEM 88

Query: 103 ----------DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNAT 152
                      +R  A  AL N+       +  + S    +  L    +     + +   
Sbjct: 89  YGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIA 148

Query: 153 RTLSNFCRGKPEPPFDQVR--PALPALAQLV-HSNDEDVLTYACWSLSYLA-DGTNDKIQ 208
             L N            +R   ++ AL +       E  L     +L  L+   T +K  
Sbjct: 149 SVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 208

Query: 209 AVIEAGVCPRLVELLGHPSPSVLTP-------ALRTVGNIVTGDDFQTQCIINHGAVPYL 261
                G    LV  L + S +            LR V +++  ++   Q +  +  +  L
Sbjct: 209 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTL 268

Query: 262 LDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAW 321
           L  L  +H   I       + N++A N +  +A+ D G +  + NL+ +        +A 
Sbjct: 269 LQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAA 327

Query: 322 AISNATSGG-TQEQIKHLVREGCVKP 346
           A+ N  +    + +  +++  G   P
Sbjct: 328 ALRNLMANRPAKYKDANIMSPGSSLP 353

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  196 bits (500), Expect = 3e-59
 Identities = 54/328 (16%), Positives = 112/328 (34%), Gaps = 25/328 (7%)

Query: 78  SENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLA 137
           +           +      + +P +     AV  L  ++ D    R  +   G  +  +A
Sbjct: 22  TCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGG-LQAIA 79

Query: 138 EL-----------NEHAKLSMLRNATRTLSNFCRGKPE--PPFDQVRPALPALAQLVHSN 184
           EL           N+H  +++ R A   L+N   G          ++  + AL   + S 
Sbjct: 80  ELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE 139

Query: 185 DEDVLTYACWSLSYLADGTNDKIQAVI-EAGVCPRLVELLGHPS-PSVLTPALRTVGNI- 241
            ED+       L  L+   +   +  + E G    L+E        S L   L  + N+ 
Sbjct: 140 SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS 199

Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHEEI---IKKEISWIISNIT---AGNREQIQAV 295
               + +       GA+ +L+  L +  +     I +    I+ N++   A N +  Q +
Sbjct: 200 AHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQIL 259

Query: 296 IDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSD 355
            +   ++ ++  L++        A   + N ++    +  + L   G V  L +L+    
Sbjct: 260 RENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA-RNPKDQEALWDMGAVSMLKNLIHSKH 318

Query: 356 PEIVTVCLIGLENILKVGEAERNMGTTI 383
             I       L N++    A+      +
Sbjct: 319 KMIAMGSAAALRNLMANRPAKYKDANIM 346

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  188 bits (480), Expect = 3e-56
 Identities = 55/326 (16%), Positives = 110/326 (33%), Gaps = 26/326 (7%)

Query: 1   LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFL------ 54
                     + +        A  +  KL   + +     + + G +    E L      
Sbjct: 31  EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRH--AMNELGGLQAIAELLQVDCEM 88

Query: 55  ----MREDYPQLQYEAAWVLINIASGTSENTNVVI-DHGAVPIFVKLLSSPSDDVREQAV 109
                      L+  A   L N+  G   N   +    G +   V  L S S+D+++   
Sbjct: 89  YGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIA 148

Query: 110 WALGNVA-GDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPE--PP 166
             L N++       +  +   G++  L+    E  K S L++    L N      E    
Sbjct: 149 SVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 208

Query: 167 FDQVRPALPALAQLV----HSNDEDVLTYACW---SLSYLADGTNDKIQAVIEAGVCPRL 219
              V  AL  L   +     +N   ++        ++S L     D  Q + E      L
Sbjct: 209 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTL 268

Query: 220 VELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISW 279
           ++ L   S ++++ A  T+ N+   +    + + + GAV  L +++   H+  I    + 
Sbjct: 269 LQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKM-IAMGSAA 327

Query: 280 IISNITAGN--REQIQAVIDAGLIRP 303
            + N+ A    + +   ++  G   P
Sbjct: 328 ALRNLMANRPAKYKDANIMSPGSSLP 353

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 90.7 bits (225), Expect = 3e-20
 Identities = 32/243 (13%), Positives = 72/243 (29%), Gaps = 27/243 (11%)

Query: 199 LADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAV 258
            A                 +    +  P    + PA+  +  +   ++     +   G +
Sbjct: 17  RAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEE-HRHAMNELGGL 75

Query: 259 PYLLDMLVHNHEEI----------IKKEISWIISNITAGNREQIQAVI-DAGLIRPIVNL 307
             + ++L  + E            +++     ++N+T G+      +    G +R +V  
Sbjct: 76  QAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQ 135

Query: 308 LQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLL-CSDPEIVTVCLIGL 366
           L++   D ++  A  + N +        K L   G VK L +  L       +   L  L
Sbjct: 136 LKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSAL 195

Query: 367 ENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWC 426
            N+       +            A      G L  +    ++ +       ++       
Sbjct: 196 WNLSAHCTENK------------ADICAVDGALAFLVGTLTYRSQTNTLAIIE--SGGGI 241

Query: 427 GRN 429
            RN
Sbjct: 242 LRN 244

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  192 bits (488), Expect = 2e-56
 Identities = 69/451 (15%), Positives = 134/451 (29%), Gaps = 70/451 (15%)

Query: 47  VPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVRE 106
           +P+ V++L  +D  + Q   A+ + +           V   G +   V LL SP+ +V++
Sbjct: 4   IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 107 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPP 166
            A  AL N+   S   +     Q  +   ++ L       + +  T  L N      E  
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD-ELK 121

Query: 167 FDQVRPALPALAQLV----------------HSNDEDVLTYACWSLSYLADGTNDKIQAV 210
            + +  ALP LA  V                   D +V   A   L  L+     +    
Sbjct: 122 EELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181

Query: 211 IEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHE 270
             +G+   L+  + +   +           +    +   +           L+    N  
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241

Query: 271 EIIKKEISWIISNITAGNREQIQA-------------VIDAGLIRPIVNLLQNAEFDTKK 317
                   +   +    N                   +  +  IR  +NL+  ++ D   
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301

Query: 318 EAA-WAISNATSG----GTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKV 372
           EA   A+ N T+      +       ++E  +  +  LL   + ++V      L N+ + 
Sbjct: 302 EACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361

Query: 373 GEAERNMGTT---------------------------------IGDVNQYAQFVEEAGGL 399
               R MG                                   +    Q A+    +  L
Sbjct: 362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSML 421

Query: 400 EKIENL-QSHDNNEIHEKSVKIFKTYWCGRN 429
             I NL +S  + +  E +  +    W  + 
Sbjct: 422 NNIINLCRSSASPKAAEAARLLLSDMWSSKE 452

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  107 bits (268), Expect = 1e-25
 Identities = 46/352 (13%), Positives = 102/352 (28%), Gaps = 42/352 (11%)

Query: 13  SDDNSLQLEATTLSRKLLSFDRN---------PPIEKVI---QSGVVPRFVEFLMREDYP 60
           + +  +Q + T L   L S D           P +   +    SG              P
Sbjct: 98  TGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDP 157

Query: 61  QLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVR------EQAVWALGN 114
           ++ + A   L N++S  +    +    G +   +  + +     R      E  +  L N
Sbjct: 158 EVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHN 217

Query: 115 VAGDSPRCRDLVLSQGALIPLLAELNEHA--------KLSMLRNATRTLSNFCRGKPE-- 164
           ++            Q       A   + +           M  N    L       P+  
Sbjct: 218 LSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPE-EETNPKGS 276

Query: 165 PPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDK-----IQAVIEAGVCPRL 219
                       L  +  S  +  L     +L  L                ++    P++
Sbjct: 277 GWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQI 336

Query: 220 VELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLV-----HNHEEIIK 274
             LL   +  V+      + N+          ++ +   P +  +L       ++ E I 
Sbjct: 337 ARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDIL 394

Query: 275 KEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFD-TKKEAAWAISN 325
               + + N+ A   +  +    + ++  I+NL +++      + A   +S+
Sbjct: 395 SSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSD 446

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  104 bits (261), Expect = 1e-24
 Identities = 52/402 (12%), Positives = 116/402 (28%), Gaps = 51/402 (12%)

Query: 1   LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYP 60
           LG    LV  + S + ++Q  A    R  L F       +  +   +   V  L R    
Sbjct: 43  LGGICKLVDLLRSPNQNVQQAAAGALR-NLVFRSTTNKLETRRQNGIREAVSLLRRTGNA 101

Query: 61  QLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSP----------------SDDV 104
           ++Q +   +L N++S   +     +   A+P+    +  P                  +V
Sbjct: 102 EIQKQLTGLLWNLSST--DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159

Query: 105 REQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFC--RGK 162
              A   L N++      R  + +   LI  L    ++   +   +     +  C     
Sbjct: 160 FFNATGCLRNLSSADA-GRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNL 218

Query: 163 PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPR---- 218
                 +V      L     +   +  +  C+S        N+    + E    P+    
Sbjct: 219 SYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGW 278

Query: 219 ---------LVELLGHPSP------SVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLD 263
                     + L+G                  T    +          +    +P +  
Sbjct: 279 LYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIAR 338

Query: 264 MLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA------EFDTKK 317
           +L   + + + +  + ++SN++      +  V+   +   +  LL +         D   
Sbjct: 339 LLQSGNSD-VVRSGASLLSNMSRH--PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILS 395

Query: 318 EAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIV 359
            A + + N  +    +  K       +  + +L   S     
Sbjct: 396 SACYTVRNLMASQ-PQLAKQYFSSSMLNNIINLCRSSASPKA 436

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 87.2 bits (215), Expect = 1e-18
 Identities = 32/334 (9%), Positives = 86/334 (25%), Gaps = 20/334 (5%)

Query: 130 GALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVR-PALPALAQLVHSNDEDV 188
           G  IP   +                + + C           +   +  L  L+ S +++V
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60

Query: 189 LTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLTPALRTVGNIVTGDDF 247
              A  +L  L   +                V LL    +  +       + N+ + D+ 
Sbjct: 61  QQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120

Query: 248 QTQCIINHGAVPYLLDMLV---------------HNHEEIIKKEISWIISNITAGNREQI 292
           + +  +   A+P L D ++                  +  +    +  + N+++ +  + 
Sbjct: 121 KEE--LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQ 178

Query: 293 QAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLL 352
                +GLI  ++  +QN    ++ +     +                    + L     
Sbjct: 179 TMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238

Query: 353 CSDPEI-VTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNN 411
            +  E   T C     + +     +  +     +                +  +     +
Sbjct: 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKD 298

Query: 412 EIHEKSVKIFKTYWCGRNEEEDALGSNVITNGKV 445
              E      +     +      +   +    K 
Sbjct: 299 ATLEACAGALQNLTASKGLMSSGMSQLIGLKEKG 332

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 58.3 bits (140), Expect = 2e-09
 Identities = 26/170 (15%), Positives = 56/170 (32%), Gaps = 14/170 (8%)

Query: 5   PALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEK-----VIQSGVVPRFVEFLMREDY 59
              +  +        LEA   + + L+  +            ++   +P+    L++   
Sbjct: 286 RTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIAR-LLQSGN 344

Query: 60  PQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSS------PSDDVREQAVWALG 113
             +    A +L N++       + V+ +   P   +LL+S       S+D+   A + + 
Sbjct: 345 SDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVR 402

Query: 114 NVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKP 163
           N+    P+      S   L  ++      A       A   LS+    K 
Sbjct: 403 NLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  190 bits (483), Expect = 1e-55
 Identities = 55/303 (18%), Positives = 102/303 (33%), Gaps = 26/303 (8%)

Query: 55  MREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSS-----------PSDD 103
           M          A  VL+ + S   E+ + + + G +    +LL              S  
Sbjct: 157 MPAPVEHQICPAVCVLMKL-SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSIT 215

Query: 104 VREQAVWALGNVA-GDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK 162
           +R  A  AL N+  GD      L   +G  +  L    +     + +     L N     
Sbjct: 216 LRRYAGMALTNLTFGDVANKATLCSMKGC-MRALVAQLKSESEDLQQVIASVLRNLSWRA 274

Query: 163 PEPPFDQVR--PALPALAQLV-HSNDEDVLTYACWSLSYLA-DGTNDKIQAVIEAGVCPR 218
                  +R   ++ AL +       E  L     +L  L+   T +K       G    
Sbjct: 275 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAF 334

Query: 219 LVELLGHPSPSVLTP-------ALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEE 271
           LV  L + S +            LR V +++  ++   Q +  +  +  LL  L  +   
Sbjct: 335 LVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLT 394

Query: 272 IIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGT 331
           I        + N++A N +  +A+ D G +  + NL+ +        +A A+ N  +   
Sbjct: 395 I-VSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453

Query: 332 QEQ 334
            + 
Sbjct: 454 AKY 456

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  178 bits (453), Expect = 3e-51
 Identities = 67/403 (16%), Positives = 135/403 (33%), Gaps = 61/403 (15%)

Query: 25  LSRKLLSFDRNPPIEKVI-QSGVVPRFVEFLMRED-----------YPQLQYEAAWVLIN 72
           +SR LL+   +      + QSG +P  ++ L   D             + +  A+  L N
Sbjct: 49  MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHN 108

Query: 73  IASGTSENTNVVIDHGAVPIFVKL------------------------LSSPSDDVREQA 108
           I     ++     +   + +  ++                        + +P +     A
Sbjct: 109 IIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPA 168

Query: 109 VWALGNVAGDSPRCRDLVLSQGALIPLLAEL-----------NEHAKLSMLRNATRTLSN 157
           V  L  ++ D    R  +   G  +  +AEL           N+H  +++ R A   L+N
Sbjct: 169 VCVLMKLSFD-EEHRHAMNELGG-LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTN 226

Query: 158 FCRGKPEPPFDQVRP--ALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVI-EAG 214
              G              + AL   + S  ED+       L  L+   +   +  + E G
Sbjct: 227 LTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVG 286

Query: 215 VCPRLVELLGHPS-PSVLTPALRTVGNI-VTGDDFQTQCIINHGAVPYLLDMLVHNHE-- 270
               L+E        S L   L  + N+     + +       GA+ +L+  L +  +  
Sbjct: 287 SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTN 346

Query: 271 -EIIKKEISWIISNIT---AGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNA 326
              I +    I+ N++   A N +  Q + +   ++ ++  L++        A   + N 
Sbjct: 347 TLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 406

Query: 327 TSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENI 369
           ++    +  + L   G V  L +L+      I       L N+
Sbjct: 407 SARN-PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 448

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  175 bits (445), Expect = 5e-50
 Identities = 53/314 (16%), Positives = 106/314 (33%), Gaps = 24/314 (7%)

Query: 1   LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFL------ 54
                     + +        A  +  KL   + +     + + G +    E L      
Sbjct: 147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRH--AMNELGGLQAIAELLQVDCEM 204

Query: 55  ----MREDYPQLQYEAAWVLINIASGTSENTNVVI-DHGAVPIFVKLLSSPSDDVREQAV 109
                      L+  A   L N+  G   N   +    G +   V  L S S+D+++   
Sbjct: 205 YGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIA 264

Query: 110 WALGNVAGD-SPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPE--PP 166
             L N++       +  +   G++  L+    E  K S L++    L N      E    
Sbjct: 265 SVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 324

Query: 167 FDQVRPALPALAQLV----HSNDEDVLTYACW---SLSYLADGTNDKIQAVIEAGVCPRL 219
              V  AL  L   +     +N   ++        ++S L     D  Q + E      L
Sbjct: 325 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTL 384

Query: 220 VELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISW 279
           ++ L   S ++++ A  T+ N+   +    + + + GAV  L +++   H+  I    + 
Sbjct: 385 LQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKM-IAMGSAA 443

Query: 280 IISNITAGNREQIQ 293
            + N+ A    + +
Sbjct: 444 ALRNLMANRPAKYK 457

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  126 bits (318), Expect = 3e-32
 Identities = 55/384 (14%), Positives = 127/384 (33%), Gaps = 53/384 (13%)

Query: 63  QYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSP------------SDDVREQAVW 110
           + + +  L+ + S + ++   +   G +P+ ++LL               S + R +A  
Sbjct: 46  KDDMSRTLLAM-SSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASA 104

Query: 111 ALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQV 170
           AL N+    P        +  ++ LL ++  +                     +   + +
Sbjct: 105 ALHNIIHSQP-DDKRGRREIRVLHLLEQIRAYC------ETCWEWQEAHEPGMDQDKNPM 157

Query: 171 RPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELL------- 223
                       +  E  +  A   L  L+     +  A+ E G    + ELL       
Sbjct: 158 P-----------APVEHQICPAVCVLMKLSFDEEHR-HAMNELGGLQAIAELLQVDCEMY 205

Query: 224 ----GHPSPSVLTPALRTVGNIVTGDDFQTQCII-NHGAVPYLLDMLVHNHEEIIKKEIS 278
                H S ++   A   + N+  GD      +    G +  L+  L    E++ ++ I+
Sbjct: 206 GLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDL-QQVIA 264

Query: 279 WIISNITAGNREQIQAVI-DAGLIRPIVNLLQNAEFD-TKKEAAWAISNATSGGTQEQIK 336
            ++ N++       +  + + G ++ ++      + + T K    A+ N ++  T+ +  
Sbjct: 265 SVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 324

Query: 337 HLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEA 396
               +G +  L   L           +     IL      RN+ + I     + Q + E 
Sbjct: 325 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGIL------RNVSSLIATNEDHRQILREN 378

Query: 397 GGLEKIENLQSHDNNEIHEKSVKI 420
             L+ +       +  I   +   
Sbjct: 379 NCLQTLLQHLKSHSLTIVSNACGT 402

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  191 bits (485), Expect = 7e-55
 Identities = 83/484 (17%), Positives = 151/484 (31%), Gaps = 85/484 (17%)

Query: 2   GSFPALVAGVWSDDNS----LQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRE 57
           GS   ++      D      L          L S  +  P     +   +P  +  L   
Sbjct: 1   GSPEFMIGEEVPSDQYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFR 60

Query: 58  DYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVA- 116
               ++  AA  L ++     +    V     +P+ V LL  P  +V   A  AL N++ 
Sbjct: 61  L-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISF 119

Query: 117 GDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPA 176
           G     +  + +   +  L+  L +   + +    T TL N          + V  AL A
Sbjct: 120 GRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWN-LSSHDSIKMEIVDHALHA 178

Query: 177 LAQLV------------------HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPR 218
           L   V                  H   E VLT     L  ++   ++  + + E   C  
Sbjct: 179 LTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRE---CDG 235

Query: 219 LVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEI-----I 273
           LV+ L           +  V   +   D  ++ + N   V  L ++    H EI      
Sbjct: 236 LVDAL-----------IFIVQAEIGQKDSDSKLVEN--CVCLLRNLSYQVHREIPQAERY 282

Query: 274 KKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKE-AAWAISNATSGG-- 330
           ++    + +N         + +    ++R  ++LL+ ++     E +A AI N  +G   
Sbjct: 283 QEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWT 342

Query: 331 TQEQIKHLVR-EGCVKPLCDLLLCSDPEIVTVCLIGLENILK------------------ 371
               I+  +R E  +  + DLL      +V      L N+                    
Sbjct: 343 YGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVK 402

Query: 372 -----------------VGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIH 414
                            V      +   I +  + A+ + E  G+EK+  +    N    
Sbjct: 403 NLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEK 462

Query: 415 EKSV 418
           E   
Sbjct: 463 EVRA 466

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  159 bits (403), Expect = 1e-45
 Identities = 38/236 (16%), Positives = 83/236 (35%), Gaps = 3/236 (1%)

Query: 42  IQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPS 101
           + S  +P       +    Q +  A  +L ++        +     G   +  + L + +
Sbjct: 36  VLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGA 95

Query: 102 DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG 161
             +R +A   +G  + +    ++ VL  GAL  LL  L+  A  ++   A   +S   R 
Sbjct: 96  AGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE 155

Query: 162 KPEPPFDQVR-PALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLV 220
           +       +R      L + +    + +   + + L  L  G  +    +   G+  +LV
Sbjct: 156 QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV 215

Query: 221 ELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKE 276
            L+           L  + ++VT      +          L ++L H  + + + E
Sbjct: 216 ALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELG--LEELLRHRCQLLQQHE 269

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  124 bits (312), Expect = 1e-32
 Identities = 39/264 (14%), Positives = 89/264 (33%), Gaps = 12/264 (4%)

Query: 171 RPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSV 230
           +P  P   +   + D+     A   L+ L +  ++       +G+   +   L   +  +
Sbjct: 39  QPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGL 98

Query: 231 LTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNRE 290
              A + +G          + ++  GA+  LL +L  +  + ++ +  + IS +      
Sbjct: 99  RWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA 158

Query: 291 QIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDL 350
            +   +       ++  +Q      K ++A+ + N   G   E    L   G V+ L  L
Sbjct: 159 GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP-EHKGTLCSMGMVQQLVAL 217

Query: 351 LLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDN 410
           +           L  L +++                 +  +   E     + + LQ H+ 
Sbjct: 218 VRTEHSPFHEHVLGALCSLVTDFPQGV-------RECREPELGLEELLRHRCQLLQQHEE 270

Query: 411 N-EIHEKSVKIFKTYWCGRNEEED 433
             E  E   K+ +T +   +   D
Sbjct: 271 YQEELEFCEKLLQTCF---SSPAD 291

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 92.8 bits (230), Expect = 3e-21
 Identities = 25/190 (13%), Positives = 61/190 (32%), Gaps = 6/190 (3%)

Query: 1   LGSFPALVAGV-WSDDNSLQLEATTLSRKLLSFDRNPPI-EKVIQSGVVPRFVEFLMRED 58
           L     LV     +    L+  A  L            I E+V+  G + + +  L R+ 
Sbjct: 80  LSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQN--VAAIQEQVLGLGALRKLLRLLDRDA 137

Query: 59  YPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGD 118
              ++ +A + +  +           +      + ++ +      ++ ++ + L N+   
Sbjct: 138 CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG 197

Query: 119 SPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALA 178
            P  +  + S G  +  L  L          +    L +     P+    + R     L 
Sbjct: 198 HPEHKGTLCSMGM-VQQLVALVRTEHSPFHEHVLGALCSLVTDFPQ-GVRECREPELGLE 255

Query: 179 QLVHSNDEDV 188
           +L+    + +
Sbjct: 256 ELLRHRCQLL 265

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  153 bits (388), Expect = 1e-40
 Identities = 54/418 (12%), Positives = 129/418 (30%), Gaps = 61/418 (14%)

Query: 47  VPRFVEFLMREDYPQLQYEAAWVLINIASGTSE-NTNVVIDHGAVPIFVKLLSSPSDDVR 105
           +  +++  +     + +      +  + +G  +    VV   G + + + + ++  +  +
Sbjct: 248 IDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQ 307

Query: 106 EQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEP 165
             A   L   +         +  QG  + +L  L       +   A   L        + 
Sbjct: 308 RVACECLIAASSKKD-KAKALCEQG--VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQD 364

Query: 166 PFDQVRP--ALPALAQLV------HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCP 217
              +     A   LA+           D+D+  +A   L+YL      K + + +     
Sbjct: 365 AAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIH 424

Query: 218 RLVELLGHPSPSVLTPALRTVGNIVTGDDFQT---------------------------- 249
            L++L    + S L   + T  N+    + Q                             
Sbjct: 425 ALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFI 484

Query: 250 ----QCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIV 305
                 + N G    L  +         ++ I+ +++ +  G +E    V+  G ++ ++
Sbjct: 485 NKRITVLANEGITTALCALAKTESHN-SQELIARVLNAV-CGLKELRGKVVQEGGVKALL 542

Query: 306 NLLQNAEFDTKKEAAWAISN-ATSGGTQEQIKHLVREGCVKPLCDLLLCS-DPEIVTVCL 363
            +        K+ A  A++    +   +           ++PL +LL            L
Sbjct: 543 RMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESL 602

Query: 364 IGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIF 421
           + L N+  + E+ R               + +  G+ KIE     D+  +   + +  
Sbjct: 603 MALTNLASMNESVRQR-------------IIKEQGVSKIEYYLMEDHLYLTRAAAQCL 647

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  146 bits (370), Expect = 3e-38
 Identities = 62/439 (14%), Positives = 131/439 (29%), Gaps = 97/439 (22%)

Query: 13  SDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLIN 72
            D +  +  A  L+   L+ D     + +     +   ++     +     Y      +N
Sbjct: 391 KDKDIRRWAADGLA--YLTLDAECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVN 447

Query: 73  IASGT--------------------------------SENTNVVIDHGAVPIFVKLLSSP 100
           + +                                  ++   V+ + G       L  + 
Sbjct: 448 LCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTE 507

Query: 101 SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR 160
           S + +E     L  V G     R  V+ +G +  LL    E  +    R+AT+ L+    
Sbjct: 508 SHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEGTEKGK-RHATQALARIGI 565

Query: 161 GK-PEPPFDQVRP--ALPALAQLVHSNDEDVLTY-ACWSLSYLADGTNDKIQAVIEAGVC 216
              PE  F   R    +  L  L+  +   +  + +  +L+ LA       Q +I+    
Sbjct: 566 TINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGV 625

Query: 217 PRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKE 276
            ++   L      +   A + + N+V  +D       N+  V +L               
Sbjct: 626 SKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFL--------------- 670

Query: 277 ISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIK 336
                                         L ++ + +T    A A++  TS   +   K
Sbjct: 671 ----------------------------ALLCEDEDEETATACAGALAIITSVSVKCCEK 702

Query: 337 HLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEA 396
            L     +  L  L+    P +    ++ + N++  GE             + A+ + E 
Sbjct: 703 ILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGE-------------EIAKKLFET 749

Query: 397 GGLEKIENLQSHDNNEIHE 415
             +E +  L    ++   +
Sbjct: 750 DIMELLSGLGQLPDDTRAK 768

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  130 bits (328), Expect = 8e-33
 Identities = 39/292 (13%), Positives = 83/292 (28%), Gaps = 7/292 (2%)

Query: 38  IEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLL 97
           I  +   G+       L + +    Q   A VL  +  G  E    V+  G V   +++ 
Sbjct: 488 ITVLANEGITTALCA-LAKTESHNSQELIARVLNAV-CGLKELRGKVVQEGGVKALLRMA 545

Query: 98  SSPSDDVREQAVWALGN--VAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTL 155
              ++  +  A  AL    +  +         S   + PLL  L +         +   L
Sbjct: 546 LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMAL 605

Query: 156 SNFCRGKPEPPFDQVR-PALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAG 214
           +N            ++   +  +   +  +   +   A   L  L    +          
Sbjct: 606 TNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNND 665

Query: 215 VCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCII-NHGAVPYLLDMLVHNHEEII 273
               L  L         T     +  I +      + I+     +  L  ++ +    + 
Sbjct: 666 RVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAV- 724

Query: 274 KKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISN 325
           +     II N+     E  + + +  ++  +  L Q  +    K    A   
Sbjct: 725 QHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQC 776

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  114 bits (285), Expect = 2e-27
 Identities = 35/232 (15%), Positives = 66/232 (28%), Gaps = 4/232 (1%)

Query: 2   GSFPALVAGVWSDDNSLQLEAT-TLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYP 60
           G   AL+          +  AT  L+R  ++ +            V+   +  L ++   
Sbjct: 536 GGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTA 595

Query: 61  QLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP 120
              +E+   L N+AS        +I    V      L      +   A   L N+   S 
Sbjct: 596 LENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM-SE 654

Query: 121 RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPA--LPALA 178
               +       +  LA L E             L+       +     +  A  L  L 
Sbjct: 655 DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILH 714

Query: 179 QLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSV 230
            L+ +    V       +  + +   +  + + E  +   L  L   P  + 
Sbjct: 715 TLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTR 766

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 89.9 bits (222), Expect = 2e-19
 Identities = 30/201 (14%), Positives = 63/201 (31%), Gaps = 5/201 (2%)

Query: 5   PALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQY 64
             L+  +  D  +L+   + ++   L+       +++I+   V +     + ED+  L  
Sbjct: 583 RPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEY-YLMEDHLYLTR 641

Query: 65  EAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD 124
            AA  L N+            ++  V     L     ++       AL  +   S +C +
Sbjct: 642 AAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCE 701

Query: 125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVR----PALPALAQL 180
            +L+  + + +L  L  +   ++       + N      E             L  L QL
Sbjct: 702 KILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQL 761

Query: 181 VHSNDEDVLTYACWSLSYLAD 201
                      A   L+    
Sbjct: 762 PDDTRAKAREVATQCLAAAER 782

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  129 bits (325), Expect = 4e-35
 Identities = 37/214 (17%), Positives = 64/214 (29%), Gaps = 20/214 (9%)

Query: 47  VPRFVEFLMRED-YPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVR 105
           + R V  L  +   P     AA  + +     SE    V     +   ++LL   ++DV+
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69

Query: 106 EQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEP 165
                AL N+  +    +  V     +  LL  L +   L   +  T  L N        
Sbjct: 70  RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129

Query: 166 PFDQVRPALPALAQLV----------------HSNDEDVLTYACWSLSYLADGTNDKIQA 209
               +  AL  L + +                   D D+       L  ++    D  +A
Sbjct: 130 N-LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKA 188

Query: 210 VIEA-GVCPRLVELLGHPSPSVLTPALRTVGNIV 242
           +    G+   LV  +            +   N V
Sbjct: 189 MRRCDGLIDSLVHYVRGTIADYQPDD-KATENCV 221

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 89.2 bits (221), Expect = 1e-20
 Identities = 30/208 (14%), Positives = 75/208 (36%), Gaps = 22/208 (10%)

Query: 169 QVRPALPALAQLVHSND--EDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHP 226
            +   L     ++ ++      ++ A   + +     ++  + V +     +L++LL   
Sbjct: 5   DMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ 64

Query: 227 SPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA 286
           +  V       + N+V  D+     +     VP LL +L    +   KK+I+ ++ N+++
Sbjct: 65  NEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124

Query: 287 GNREQIQAVIDAGLIRPIVNLLQN---------------AEFDTKKEAAWAISNATSGGT 331
            + +    +I   L+    N++                  +FD        + N +S G 
Sbjct: 125 ND-KLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAG- 182

Query: 332 QEQIKHLVRE--GCVKPLCDLLLCSDPE 357
               +  +R   G +  L   +  +  +
Sbjct: 183 -ADGRKAMRRCDGLIDSLVHYVRGTIAD 209

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 60.0 bits (145), Expect = 2e-10
 Identities = 23/155 (14%), Positives = 49/155 (31%), Gaps = 19/155 (12%)

Query: 5   PALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQY 64
             L+  +   +  +Q       R  L F+ N    +V +   VPR ++ L +    + + 
Sbjct: 55  LKLLQLLKVQNEDVQRAVCGALR-NLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKK 113

Query: 65  EAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSP----------------SDDVREQA 108
           +   +L N++S   +    ++   A+    + +  P                  D+    
Sbjct: 114 QITGLLWNLSSN--DKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNV 171

Query: 109 VWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHA 143
              L N++      R  +     LI  L       
Sbjct: 172 TGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGT 206

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 39.9 bits (93), Expect = 7e-04
 Identities = 18/136 (13%), Positives = 48/136 (35%), Gaps = 24/136 (17%)

Query: 287 GNREQIQAVIDAGLIRPIVNLLQ--NAEFDTKKEAAWAISNATSGGTQEQIKHLVRE-GC 343
           G+   ++  ++       V++L+  +        AA  I +      + + +  V +   
Sbjct: 1   GSNADMEMTLE-----RAVSMLEADHMLPSRISAAATFIQHECFQ--KSEARKRVNQLRG 53

Query: 344 VKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEK-I 402
           +  L  LL   + ++       L N+        +      + N+    V E  G+ + +
Sbjct: 54  ILKLLQLLKVQNEDVQRAVCGALRNL-----VFED------NDNKLE--VAELNGVPRLL 100

Query: 403 ENLQSHDNNEIHEKSV 418
           + L+   + E  ++  
Sbjct: 101 QVLKQTRDLETKKQIT 116

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 88.6 bits (219), Expect = 4e-20
 Identities = 43/239 (17%), Positives = 83/239 (34%), Gaps = 27/239 (11%)

Query: 4   FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQ 63
              L+  +  D  ++   A ++   ++   +       +   ++ +    L + +   L 
Sbjct: 34  LKKLIELLDDDLWTVVKNAISI---IMVIAKTRE---DLYEPMLKKLFSLLKKSEAIPLT 87

Query: 64  YEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCR 123
            E A     +A    E    +I     P+         +  +    +AL  +A  +P   
Sbjct: 88  QEIAKAFGQMAKEKPELVKSMI-----PVLFANYRIGDEKTKINVSYALEEIAKANPMLM 142

Query: 124 DLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHS 183
             ++     + +L+  N   KL+ L        NF     E  F  V P LP +  L+H 
Sbjct: 143 ASIVRD--FMSMLSSKNREDKLTAL--------NFIEAMGENSFKYVNPFLPRIINLLHD 192

Query: 184 NDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIV 242
            DE V   A  +L +LA   +   + VI      + +E L   S  V       +  ++
Sbjct: 193 GDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISRLL 245

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 65.1 bits (158), Expect = 4e-12
 Identities = 34/236 (14%), Positives = 79/236 (33%), Gaps = 26/236 (11%)

Query: 89  AVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSML 148
            +   ++LL      V + A+  +  +A          L +  L  L + L +   + + 
Sbjct: 33  VLKKLIELLDDDLWTVVKNAISIIMVIAKTRED-----LYEPMLKKLFSLLKKSEAIPLT 87

Query: 149 RNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQ 208
           +   +      + KPE     V+  +P L       DE       ++L  +A      + 
Sbjct: 88  QEIAKAFGQMAKEKPE----LVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA 143

Query: 209 AVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHN 268
           +++        + +L   +      AL  +  +                +P ++++L H+
Sbjct: 144 SIVRD-----FMSMLSSKNREDKLTALNFIEAMGENSFKYVN-----PFLPRIINLL-HD 192

Query: 269 HEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAIS 324
            +EI++      + ++   N +  + VI        +  L +      K     IS
Sbjct: 193 GDEIVRASAVEALVHLATLNDKLRKVVIK------RLEELNDTSSLVNKTVKEGIS 242

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 70.6 bits (173), Expect = 7e-14
 Identities = 34/253 (13%), Positives = 70/253 (27%), Gaps = 45/253 (17%)

Query: 46  VVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVR 105
                   L   +    +  +A VL                  AV + ++  S  +   R
Sbjct: 24  NDDELFRLLDDHN-SLKRISSARVLQLRG-----------GQDAVRLAIEFCSDKNYIRR 71

Query: 106 EQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEP 165
           +   + LG +     +C D V +      L           +   A  + +  C+  P  
Sbjct: 72  DIGAFILGQI-KICKKCEDNVFN-----ILNNMALNDKSACVRATAIESTAQRCKKNPIY 125

Query: 166 PFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH 225
                   +            +V     +++S + D               P L+ LL  
Sbjct: 126 S----PKIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLINLLKD 170

Query: 226 PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNIT 285
           P+  V   A   +      +                ++ML   +EE ++ E    +S   
Sbjct: 171 PNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEE-VRIEAIIGLSYR- 219

Query: 286 AGNREQIQAVIDA 298
             ++  +  + D 
Sbjct: 220 -KDKRVLSVLCDE 231

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 53.6 bits (129), Expect = 4e-08
 Identities = 31/267 (11%), Positives = 67/267 (25%), Gaps = 52/267 (19%)

Query: 103 DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK 162
             + +A    G                      L  L +        ++ R L    RG 
Sbjct: 5   YQKRKASKEYGLYNQCKK----------LNDDELFRLLDDHNSLKRISSARVLQL--RGG 52

Query: 163 PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVEL 222
            +        A+    +     +        + L  +        +   +          
Sbjct: 53  QD--------AVRLAIEFCSDKNYIRRDIGAFILGQIKIC-----KKCEDNVFNILNNMA 99

Query: 223 LGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIIS 282
           L   S  V   A+ +       +   +        V              +++  ++ IS
Sbjct: 100 LNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTN-VRRATAFAIS 153

Query: 283 NITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREG 342
            I   ++  I  +I+          L++   D +  AA+AI+                  
Sbjct: 154 VI--NDKATIPLLINL---------LKDPNGDVRNWAAFAININKYDN----------SD 192

Query: 343 CVKPLCDLLLCSDPEIVTVCLIGLENI 369
                 ++L   + E+    +IGL   
Sbjct: 193 IRDCFVEMLQDKNEEVRIEAIIGLSYR 219

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 32/195 (16%), Positives = 58/195 (29%), Gaps = 46/195 (23%)

Query: 46  VVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVR 105
           +V +       +    ++   A+ +  I            D   +P+ + LL  P+ DVR
Sbjct: 129 IVEQSQITA-FDKSTNVRRATAFAISVIN-----------DKATIPLLINLLKDPNGDVR 176

Query: 106 EQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEP 165
             A +A+     D+   RD        + +L + NE  +      A   LS         
Sbjct: 177 NWAAFAININKYDNSDIRD------CFVEMLQDKNEEVR----IEAIIGLSYR--KDKR- 223

Query: 166 PFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH 225
                   L  L   +      V      +   L D             + P L  +L  
Sbjct: 224 -------VLSVLCDEL--KKNTVYDDIIEAAGELGD-----------KTLLPVLDTMLYK 263

Query: 226 -PSPSVLTPALRTVG 239
                ++T A+  + 
Sbjct: 264 FDDNEIITSAIDKLK 278

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 67.8 bits (166), Expect = 3e-13
 Identities = 39/245 (15%), Positives = 71/245 (28%), Gaps = 57/245 (23%)

Query: 47  VPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVRE 106
           V  +++ L  +    ++  AA+ L  I            D  AV   +K L      VR 
Sbjct: 21  VEMYIKNLQDDS-YYVRRAAAYALGKIG-----------DERAVEPLIKALKDEDAWVRR 68

Query: 107 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPP 166
            A  ALG +  +              +  L +  +     + ++A   L     G     
Sbjct: 69  AAADALGQIGDE------------RAVEPLIKALKDEDGWVRQSAAVALGQI--GDER-- 112

Query: 167 FDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHP 226
                 A+  L + +   D  V   A ++L  + D      +AV        L++ L   
Sbjct: 113 ------AVEPLIKALKDEDWFVRIAAAFALGEIGD-----ERAV------EPLIKALKDE 155

Query: 227 SPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA 286
              V   A   +G I  G +              +  +         +K     +    +
Sbjct: 156 DGWVRQSAADALGEI--GGE---------RVRAAMEKLA-ETGTGFARKVAVNYLETHKS 203

Query: 287 GNREQ 291
            N   
Sbjct: 204 FNHHH 208

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 65.5 bits (160), Expect = 2e-12
 Identities = 40/238 (16%), Positives = 72/238 (30%), Gaps = 56/238 (23%)

Query: 86  DHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKL 145
           D   V +++K L   S  VR  A +ALG +  +              +  L +  +    
Sbjct: 17  DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE------------RAVEPLIKALKDEDA 64

Query: 146 SMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTND 205
            + R A   L     G           A+  L + +   D  V   A  +L  + D    
Sbjct: 65  WVRRAAADALGQI--GDER--------AVEPLIKALKDEDGWVRQSAAVALGQIGD---- 110

Query: 206 KIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDML 265
             +  +E      L++ L      V   A   +G I  GD+          AV  L+  L
Sbjct: 111 --ERAVEP-----LIKALKDEDWFVRIAAAFALGEI--GDE---------RAVEPLIKAL 152

Query: 266 VHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAI 323
                  +++  +  +  I               +   +  L +      +K A   +
Sbjct: 153 KDEDGW-VRQSAADALGEIG-----------GERVRAAMEKLAETGTGFARKVAVNYL 198

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 20/91 (21%)

Query: 46  VVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVR 105
            V   ++ L +++   ++  AA+ L  I            D  AV   +K L      VR
Sbjct: 113 AVEPLIKAL-KDEDWFVRIAAAFALGEIG-----------DERAVEPLIKALKDEDGWVR 160

Query: 106 EQAVWALGNVAGDSPRCRDLVLSQGALIPLL 136
           + A  ALG + G+          + A+  L 
Sbjct: 161 QSAADALGEIGGER--------VRAAMEKLA 183

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 66.2 bits (162), Expect = 7e-13
 Identities = 41/235 (17%), Positives = 72/235 (30%), Gaps = 56/235 (23%)

Query: 89  AVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSML 148
            V +++K L   S  VR  A +ALG +  +              +  L +  +     + 
Sbjct: 15  KVEMYIKNLQDDSYYVRRAAAYALGKIGDE------------RAVEPLIKALKDEDAWVR 62

Query: 149 RNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQ 208
           R A   L     G           A+  L + +   D  V   A  +L  + D      +
Sbjct: 63  RAAADALGQI--GDER--------AVEPLIKALKDEDGWVRQSAAVALGQIGD------E 106

Query: 209 AVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHN 268
             +E      L++ L      V   A   +G I  GD+          AV  L+  L   
Sbjct: 107 RAVEP-----LIKALKDEDWFVRIAAAFALGEI--GDE---------RAVEPLIKALKDE 150

Query: 269 HEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAI 323
               +++  +  +  I  G      A+           L +      +K A   +
Sbjct: 151 DGW-VRQSAADALGEI--GGERVRAAMEK---------LAETGTGFARKVAVNYL 193

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 36/226 (15%), Positives = 66/226 (29%), Gaps = 56/226 (24%)

Query: 47  VPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVRE 106
           V  +++ L  +    ++  AA+ L  I            D  AV   +K L      VR 
Sbjct: 16  VEMYIKNLQDDS-YYVRRAAAYALGKIG-----------DERAVEPLIKALKDEDAWVRR 63

Query: 107 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPP 166
            A  ALG +  +              +  L +  +     + ++A   L     G     
Sbjct: 64  AAADALGQIGDE------------RAVEPLIKALKDEDGWVRQSAAVALGQI--GDER-- 107

Query: 167 FDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHP 226
                 A+  L + +   D  V   A ++L  + D      +  +E      L++ L   
Sbjct: 108 ------AVEPLIKALKDEDWFVRIAAAFALGEIGD------ERAVEP-----LIKALKDE 150

Query: 227 SPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEI 272
              V   A   +G I  G +              +  +        
Sbjct: 151 DGWVRQSAADALGEI--GGE---------RVRAAMEKLAETGTGFA 185

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 37/269 (13%), Positives = 70/269 (26%), Gaps = 80/269 (29%)

Query: 107 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPP 166
           +      +                  + +  +  +     + R A   L           
Sbjct: 2   RGSHHHHHHTDP------------EKVEMYIKNLQDDSYYVRRAAAYALGKI-------- 41

Query: 167 FDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHP 226
                 A+  L + +   D  V   A  +L  + D      +  +E      L++ L   
Sbjct: 42  --GDERAVEPLIKALKDEDAWVRRAAADALGQIGD------ERAVEP-----LIKALKDE 88

Query: 227 SPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA 286
              V   A   +G I  GD+          AV  L+  L      +              
Sbjct: 89  DGWVRQSAAVALGQI--GDE---------RAVEPLIKALKDEDWFV-------------- 123

Query: 287 GNREQIQAVI------DAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVR 340
               +I A        D   + P++  L++ +   ++ AA A+          +I     
Sbjct: 124 ----RIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADAL---------GEIGG--- 167

Query: 341 EGCVKPLCDLLLCSDPEIVTVCLIGLENI 369
           E     +  L          V +  LE  
Sbjct: 168 ERVRAAMEKLAETGTGFARKVAVNYLETH 196

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 51.5 bits (124), Expect = 8e-08
 Identities = 27/156 (17%), Positives = 44/156 (28%), Gaps = 34/156 (21%)

Query: 46  VVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVR 105
            V   ++ L  ED   ++  AA  L  I            D  AV   +K L      VR
Sbjct: 77  AVEPLIKALKDED-GWVRQSAAVALGQIG-----------DERAVEPLIKALKDEDWFVR 124

Query: 106 EQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEP 165
             A +ALG +  +              +  L +  +     + ++A   L     G    
Sbjct: 125 IAAAFALGEIGDE------------RAVEPLIKALKDEDGWVRQSAADALGEI--GGER- 169

Query: 166 PFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLAD 201
                     A+ +L  +        A   L     
Sbjct: 170 -------VRAAMEKLAETGTGFARKVAVNYLETHKS 198

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.8 bits (149), Expect = 2e-10
 Identities = 60/459 (13%), Positives = 123/459 (26%), Gaps = 146/459 (31%)

Query: 15  DNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIA 74
           D+ +      +S  L  F          Q  +V +FVE ++R +Y        +++  I 
Sbjct: 52  DHIIM-SKDAVSGTLRLFW----TLLSKQEEMVQKFVEEVLRINYK-------FLMSPIK 99

Query: 75  S---GTSENTNVVID-----HGAVPIFVKLLSSPSDDV-REQAVWALGNVAGDSPRCRDL 125
           +     S  T + I+     +    +F K       +V R Q    L             
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKY------NVSRLQPYLKLRQA---------- 143

Query: 126 VLSQGALIPLLAELNEHAKLS---MLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH 182
                     L EL     +    +L            GK              +A  V 
Sbjct: 144 ----------LLELRPAKNVLIDGVLG---------S-GK------TW------VALDV- 170

Query: 183 SNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIV 242
                V     + + +L     +  + V+E      L +LL    P+  + +  +    +
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLE-----MLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 243 TGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEI--SWIISN--------ITAGNREQI 292
                Q         +  LL    + +  ++   +  +   +         +T   ++  
Sbjct: 226 RIHSIQA-------ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ-- 276

Query: 293 QAVIDA--GLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGC-VKPLCD 349
             V D         ++L  ++   T  E    +        Q+    L RE     P   
Sbjct: 277 --VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD----LPREVLTTNPR-- 328

Query: 350 LLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKI-----EN 404
                         + +     + E+ R+   T    + +     +   L  I       
Sbjct: 329 -------------RLSI-----IAESIRDGLATW---DNWKHVNCDK--LTTIIESSLNV 365

Query: 405 LQSHDNNE------IHEKSVKI----FKTYWCGRNEEED 433
           L+  +  +      +   S  I        W    + + 
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 61.2 bits (148), Expect = 3e-10
 Identities = 58/317 (18%), Positives = 109/317 (34%), Gaps = 22/317 (6%)

Query: 36  PPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVK 95
           P +   +++ +   F   L  +D P ++  AA  L   A     +    +    +P+F  
Sbjct: 155 PRVSSAVKAELRQYFRN-LCSDDTPMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSN 210

Query: 96  LLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTL 155
           L S   D VR  AV A  N+A    +       +  ++P L +  E     +        
Sbjct: 211 LASDEQDSVRLLAVEACVNIA----QLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKF 266

Query: 156 SNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADG-TNDKIQAVIEAG 214
           +     K   P       +PA   L+   + +V   A   +    +  + D  + VI + 
Sbjct: 267 TELQ--KAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQ 324

Query: 215 VCPRLVELLGHPSPSVLTPALRTVGNIVT--GDDFQTQCIINHGAVPYLLDMLVHNHEEI 272
           + P + EL+   +  V +     +  +    G D   + ++     P  L  L     E+
Sbjct: 325 ILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL-----PLFLAQLKDECPEV 379

Query: 273 IKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQ 332
                  IISN+   N       +   L+  IV L ++A++  +      +         
Sbjct: 380 RLN----IISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV 435

Query: 333 EQIKHLVREGCVKPLCD 349
           E     +   C+  L D
Sbjct: 436 EFFDEKLNSLCMAWLVD 452

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 50.4 bits (120), Expect = 8e-07
 Identities = 52/305 (17%), Positives = 94/305 (30%), Gaps = 38/305 (12%)

Query: 90  VPIFVKLLSSPSDDVREQAVWALGNVAG--DSPRCRDLVLSQGALIPLLAELNEHAKLSM 147
           + + +  L +    +R  ++  L  +A      R R        L+P L +        +
Sbjct: 12  IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRS------ELLPFLTDTIYDED-EV 64

Query: 148 LRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKI 207
           L      L  F      P +  V   LP L  L    +  V   A  SL  ++   +   
Sbjct: 65  LLALAEQLGTFTTLVGGPEY--VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSD 122

Query: 208 QAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVH 267
              +EA   P +  L G    +  T A               +  +      Y  + L  
Sbjct: 123 ---LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAEL----RQYFRN-LCS 174

Query: 268 NHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNAT 327
           +   ++++  +  +              + + +I    NL  + +   +  A  A  N  
Sbjct: 175 DDTPMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSNLASDEQDSVRLLAVEACVNIA 231

Query: 328 SGGTQEQIKHL---------------VREGCVKPLCDLLLCSDPEIVTVCLI-GLENILK 371
               QE ++ L               VR        +L     PEI    L+   +N++K
Sbjct: 232 QLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMK 291

Query: 372 VGEAE 376
             EAE
Sbjct: 292 DCEAE 296

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 59.0 bits (141), Expect = 2e-09
 Identities = 35/228 (15%), Positives = 88/228 (38%), Gaps = 9/228 (3%)

Query: 4   FPALVAGVWSDDNSLQLEAT----TLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDY 59
              L   + SD   L+  ++    T+  +L        +   +   +  R    + +++ 
Sbjct: 88  VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED 147

Query: 60  PQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDS 119
             +Q EA  ++ ++ S       V      +   +  L+SP   VR++ + ALG++    
Sbjct: 148 VSVQLEALDIMADMLS-RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLV--- 203

Query: 120 PRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQ 179
             C ++V     +  LL+EL+++  +S  R   + ++   R       + +   +P + +
Sbjct: 204 MSCGNIVFVD-LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVK 262

Query: 180 LVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPS 227
             + +D+++  Y   +          ++   +   +   L  L   P+
Sbjct: 263 FCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPN 310

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 47.0 bits (110), Expect = 9e-06
 Identities = 35/240 (14%), Positives = 76/240 (31%), Gaps = 23/240 (9%)

Query: 5   PALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQY 64
             L   V+S   +L  + +  S             K   + V     +         ++ 
Sbjct: 777 RMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRL 836

Query: 65  EAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD 124
            A   L  +      +  + +      + ++  SSPS++V+  A +ALG+++  +     
Sbjct: 837 LALLSLGEVGHHIDLSGQLELKS----VILEAFSSPSEEVKSAASYALGSISVGNLPE-- 890

Query: 125 LVLSQGALIPLLAELNEHAKLS-MLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHS 183
                  L  +L E+    K   +L ++ + + +        P+  V      L +    
Sbjct: 891 ------YLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPY--VENIWALLLKHCEC 942

Query: 184 NDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVT 243
            +E         L         K+  +    + PRL   L   S    +  +  V   ++
Sbjct: 943 AEEGTRNVVAECLG--------KLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTIS 994

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 57.5 bits (138), Expect = 5e-09
 Identities = 52/349 (14%), Positives = 110/349 (31%), Gaps = 39/349 (11%)

Query: 38  IEKVIQSGVVPRFVEFLMRE-DYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKL 96
           I++ +++ +   +++ L R  +   +Q  +A VL+   S T      +       IF+  
Sbjct: 285 IDETMRTYITENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINLKQL--SEIFINA 342

Query: 97  LSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLS 156
           +S       E +V AL  ++  +     +  ++     LL  +        L      ++
Sbjct: 343 ISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMA 402

Query: 157 NFCRGKPEPPFDQVRPALPALAQL-----VHSNDEDVLTYACWSLSYLADGTNDKIQAVI 211
           N      E                           +             D      + ++
Sbjct: 403 NLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAA--------KEDILLFNEKYIL 454

Query: 212 EAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHE- 270
              +   L   + + SP+     +R + NI    +F  Q +   GAV  +L+ L +  + 
Sbjct: 455 RTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQ-LAQQGAVKIILEYLANKQDI 513

Query: 271 -EIIKKEISWIISN--ITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKK---------- 317
            E I+      ++   I        +       I  +  LL  +                
Sbjct: 514 GEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKL 573

Query: 318 ----EAAWAISNATS---GGTQEQIKHLVR-EGCVKPLCDLLLCSDPEI 358
               EA  A++N  S      +E  KH+V  +     + +L+L  +  +
Sbjct: 574 TDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPL 622

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 44.0 bits (103), Expect = 9e-05
 Identities = 25/157 (15%), Positives = 53/157 (33%), Gaps = 8/157 (5%)

Query: 33  DRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHG---- 88
           D     + ++ + V    +E LM ++   LQ     ++ N+ S          +      
Sbjct: 593 DGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQS 652

Query: 89  --AVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAEL--NEHAK 144
                I VKLL     + +        N+A   P     +L++  LI    ++  ++   
Sbjct: 653 LRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDD 712

Query: 145 LSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLV 181
           + + +             P+   ++V P L    +L 
Sbjct: 713 IELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLK 749

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 56.4 bits (135), Expect = 1e-08
 Identities = 39/306 (12%), Positives = 97/306 (31%), Gaps = 34/306 (11%)

Query: 46  VVPRFVEFL---MREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSD 102
           ++   +EF+   +  D  + +  A     +I  G  +       H A+P  + L++  S 
Sbjct: 366 ILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSL 425

Query: 103 DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLS--MLRNATRTLSNFCR 160
            V+E   W +G +A       + +  Q  L  ++       +    +  N + T+ N   
Sbjct: 426 QVKETTAWCIGRIADS---VAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVE 482

Query: 161 GKPEPPFDQVRPALPA-LAQLVHS-----NDEDVLTYACWSLSYLADGTNDKIQAVIEA- 213
              E     +    PA +  L+ +     N+ +    A  +L+ + +   D +     + 
Sbjct: 483 QLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASI 542

Query: 214 --GVCPRLVELLGHPSPSVLTPALR-------------TVGNIVTGDDFQTQCIINHGAV 258
              V  +L + +      +     +                   +    +         +
Sbjct: 543 STFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA---DMLM 599

Query: 259 PYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKE 318
                +L       I+ ++ + IS + A   +  +  ++      ++  L   +      
Sbjct: 600 GLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET-FSPYLLKALNQVDSPVSIT 658

Query: 319 AAWAIS 324
           A   I+
Sbjct: 659 AVGFIA 664

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 20/142 (14%), Positives = 42/142 (29%), Gaps = 34/142 (23%)

Query: 89  AVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSML 148
            +      ++  +  VR     AL  +  ++            L+  L+  +   +    
Sbjct: 13  GLVPRGSHMADENKWVRRDVSTALSRMGDEAF---------EPLLESLSNEDWRIR---- 59

Query: 149 RNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQ 208
             A   + NF          Q   A+  L +L+  +   V + A  SL  +        +
Sbjct: 60  GAAAWIIGNF----------QDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG------E 103

Query: 209 AVIEAGVCPRLVELLGHPSPSV 230
            V  A     + +L    +   
Sbjct: 104 RVRAA-----MEKLAETGTGFA 120

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 23/143 (16%), Positives = 43/143 (30%), Gaps = 34/143 (23%)

Query: 54  LMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALG 113
            M ++   ++ + +  L  +               A    ++ LS+    +R  A W +G
Sbjct: 20  HMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIG 67

Query: 114 NVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPA 173
           N      R  +       LI LL + +   +      A R+L     G            
Sbjct: 68  NFQ--DERAVE------PLIKLLEDDSGFVR----SGAARSLEQI--GGER--------V 105

Query: 174 LPALAQLVHSNDEDVLTYACWSL 196
             A+ +L  +        A   L
Sbjct: 106 RAAMEKLAETGTGFARKVAVNYL 128

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 12/68 (17%)

Query: 46  VVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVR 105
            V   ++ L  +D   ++  AA  L  I                     KL  + +   R
Sbjct: 74  AVEPLIKLL-EDDSGFVRSGAARSLEQIG-----------GERVRAAMEKLAETGTGFAR 121

Query: 106 EQAVWALG 113
           + AV  L 
Sbjct: 122 KVAVNYLE 129

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 41.1 bits (97), Expect = 8e-05
 Identities = 23/153 (15%), Positives = 45/153 (29%), Gaps = 35/153 (22%)

Query: 171 RPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSV 230
              L      +   ++ V      +LS + D      +A         L+E L +    +
Sbjct: 11  SSGLVPRGSHMADENKWVRRDVSTALSRMGD------EAF------EPLLESLSNEDWRI 58

Query: 231 LTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNRE 290
              A   +GN    D+          AV  L+ +L  +    ++   +  +  I  G   
Sbjct: 59  RGAAAWIIGNF--QDE---------RAVEPLIKLL-EDDSGFVRSGAARSLEQI--GGER 104

Query: 291 QIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAI 323
              A         +  L +      +K A   +
Sbjct: 105 VRAA---------MEKLAETGTGFARKVAVNYL 128

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 54.7 bits (131), Expect = 3e-08
 Identities = 32/228 (14%), Positives = 79/228 (34%), Gaps = 10/228 (4%)

Query: 136 LAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWS 195
           L  L++  +L +   A   L +  +       + +  AL  L  ++ +++E+ +     S
Sbjct: 46  LKSLSKKYRLEVGIQAMEHLIHVLQTDRSDS-EIIGYALDTLYNIISNDEEEEVEEN--S 102

Query: 196 LSYLADGTNDKIQAVI-EAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCII- 253
                D  +   +  I +      L+ LL      V  P ++ + +++     Q Q II 
Sbjct: 103 TRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIIL 162

Query: 254 -NHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQN-- 310
            +   V  L+D+L  + E +I+ +   ++  +T  N    + V        +++++    
Sbjct: 163 VSPMGVSRLMDLLADSRE-VIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEG 221

Query: 311 -AEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPE 357
            ++     E    +                    ++ +       D  
Sbjct: 222 NSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDEN 269

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 53.3 bits (127), Expect = 1e-07
 Identities = 47/368 (12%), Positives = 106/368 (28%), Gaps = 42/368 (11%)

Query: 14  DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINI 73
            D +L+  +      L +  R+  +  ++        ++ L+      ++     VL  I
Sbjct: 333 SDWNLRKCSAAALDVLANVYRDELLPHILP------LLKELLFHHEWVVKESGILVLGAI 386

Query: 74  ASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALI 133
           A G  +     +    +P  ++ LS     VR    W L   A            +  + 
Sbjct: 387 AEGCMQGMIPYLPE-LIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMT 445

Query: 134 PLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYAC 193
            LL  + +  K  +   A    +             +   L  L           L    
Sbjct: 446 ELLKRILDSNK-RVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILY 504

Query: 194 WSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCII 253
            ++  LAD       +V      P  ++        +L P L    N++  +D     ++
Sbjct: 505 DAIGTLAD-------SVGHHLNKPEYIQ--------MLMPPLIQKWNMLKDEDKDLFPLL 549

Query: 254 NHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEF 313
                   L  +    +         +         ++   ++   L + ++N  Q  ++
Sbjct: 550 E------CLSSVATALQSGFLPYCEPVY--------QRCVNLVQKTLAQAMLNNAQPDQY 595

Query: 314 DTKKE-----AAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLEN 368
           +   +     A   +S    G      + + R   +  +   +    PE+       L +
Sbjct: 596 EAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGD 655

Query: 369 ILKVGEAE 376
           + K     
Sbjct: 656 LTKACFQH 663

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963

 Score = 51.7 bits (123), Expect = 3e-07
 Identities = 32/167 (19%), Positives = 56/167 (33%), Gaps = 21/167 (12%)

Query: 47  VPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVRE 106
               +  ++  D   L+Y  A+ +    +GT  N+ V        +    +S  +DDVR 
Sbjct: 543 ADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVK------RLLHVAVSDSNDDVRR 596

Query: 107 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPP 166
            AV ALG V                +  ++  L++     +       L   C GK    
Sbjct: 597 AAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ- 646

Query: 167 FDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEA 213
                 A+  L  L     + V   A  +LS +     +K+   +  
Sbjct: 647 -----SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVAD 688

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 38/230 (16%), Positives = 72/230 (31%), Gaps = 18/230 (7%)

Query: 150 NATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQA 209
            A RT+                     L + +   D  V   A   ++ L D        
Sbjct: 105 LAVRTMGCIR----VD--KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---M 155

Query: 210 VIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNH 269
           V + G    L +L+   +P V+  A+  +  I           +N   +  LL  L +  
Sbjct: 156 VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NEC 214

Query: 270 EEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSG 329
            E  +  I   +SN    +  + Q+     +   +   L +A       A   +      
Sbjct: 215 TEWGQIFILDCLSNYNPKDDREAQS-----ICERVTPRLSHANSAVVLSAVKVLMKFLEL 269

Query: 330 GTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNM 379
             ++   + +    + P    LL  +PE   V  + L NI  + +    +
Sbjct: 270 LPKDSDYYNMLLKKLAPPLVTLLSGEPE---VQYVALRNINLIVQKRPEI 316

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	446
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.98
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.96
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.96
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.96
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.96
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.95
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.95
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.93
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.93
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.92
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.9
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.88
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.87
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.84
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.83
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.83
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.82
3grl_A	651	General vesicular transport factor P115; vesicle t	99.81
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.8
3grl_A	651	General vesicular transport factor P115; vesicle t	99.76
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.74
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.74
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.71
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.71
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.68
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.68
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.68
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.66
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.65
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.64
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.63
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.62
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.6
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.53
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.51
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.5
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.48
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.47
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.45
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.33
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	99.17
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.17
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.14
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.13
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.13
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	99.04
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.04
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.01
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.96
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.94
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.93
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.85
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.85
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.74
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.7
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.65
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.62
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.61
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.61
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.6
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.43
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.39
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.38
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.35
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	98.32
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.27
2x19_B	963	Importin-13; nuclear transport, protein transport;	98.22
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.18
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.16
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	98.11
2x19_B	963	Importin-13; nuclear transport, protein transport;	98.11
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.86
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.8
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.77
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.69
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.54
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.54
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.52
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.51
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.48
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	97.44
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.36
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.34
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.28
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	97.27
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	97.23
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	97.1
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	97.04
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	96.97
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	96.88
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.85
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.76
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.4
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	96.26
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	96.14
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	95.92
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.58
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	95.25
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	95.24
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	95.2
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	95.16
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	94.77
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	94.71
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	93.16
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	93.08
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	92.91
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	92.8
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	92.54
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	92.31
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	92.15
1vdy_A	140	Hypothetical protein (RAFL09-17-B18); structural g	92.07
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	91.91
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	91.57
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	91.44
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	91.33
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	91.22
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	90.96
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	90.57
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	90.44
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	90.06
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	90.02
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	88.64
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	88.59
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	87.3
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	84.56
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	83.68
1dvp_A	220	HRS, hepatocyte growth factor-regulated tyrosine k	82.27
2jak_A	392	Serine/threonine-protein phosphatase 2A 56 kDa RE	81.9
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	80.77
1elk_A	157	Target of MYB1; superhelix of helices, endocytosis	80.75
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	80.71

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=3.9e-58  Score=435.90  Aligned_cols=435  Identities=46%  Similarity=0.787  Sum_probs=389.3

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676            3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN   82 (446)
Q Consensus         3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~   82 (446)
                      .++.+++.++|+|+..|+.|+..++++++.+++++.+.+++.|++|.|+++|++++.+.+|..|+|+|+|++.++++.+.
T Consensus        58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~  137 (510)
T 3ul1_B           58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK  137 (510)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            47899999999999999999999999999887889999999999999999998766589999999999999998999999


Q ss_pred             HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcccc----chhHHHHHHHHHHHh
Q 043676           83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHA----KLSMLRNATRTLSNF  158 (446)
Q Consensus        83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~----~~~~~~~a~~~L~~l  158 (446)
                      .+++.|+++.|+.+|.++++++++.|+|+|+||+.+.+.++..+.+.|++++++.++....    ...+++.++|++.++
T Consensus       138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl  217 (510)
T 3ul1_B          138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL  217 (510)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999995322    235788999999999


Q ss_pred             hcCC-CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHH
Q 043676          159 CRGK-PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRT  237 (446)
Q Consensus       159 ~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~  237 (446)
                      +.+. +........+++|.|+.++.+++++++..++++|.+++....+....+.+.|+++.|+.++.+++..++..++++
T Consensus       218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~a  297 (510)
T 3ul1_B          218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA  297 (510)
T ss_dssp             HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred             hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHH
Confidence            9987 556666778999999999999999999999999999999988888888899999999999999999999999999


Q ss_pred             HHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHH
Q 043676          238 VGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKK  317 (446)
Q Consensus       238 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~  317 (446)
                      ++|++.+++.....+++.|+++.++.++.++ +..+++.|+|+|+|++.+++..+..+.+.|+++.|+.++.+++.++++
T Consensus       298 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~  376 (510)
T 3ul1_B          298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQK  376 (510)
T ss_dssp             HHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred             HHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHH
Confidence            9999999999999999999999999999998 899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhC
Q 043676          318 EAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAG  397 (446)
Q Consensus       318 ~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  397 (446)
                      .|+++|+|++..++.+++..+.+.|+++.|+++|+++|++++..++++|.++++.+++..       ..+.+...|.++|
T Consensus       377 ~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-------~~~~~~~~iee~g  449 (510)
T 3ul1_B          377 EAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEECG  449 (510)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-------chHHHHHHHHHcC
Confidence            999999999998889999999999999999999999999999999999999999877642       4566889999999


Q ss_pred             hHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCcccccccccccCCcc
Q 043676          398 GLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNEEEDALGSNVITNGKV  445 (446)
Q Consensus       398 ~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~  445 (446)
                      |+++|+.|++|+|++|+++|.++|++||.++||+++++.|....+||-
T Consensus       450 gl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~~~~~~~  497 (510)
T 3ul1_B          450 GLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTSEGFA  497 (510)
T ss_dssp             HHHHHHHGGGCSSHHHHHHHHHHHHHHCC-------------------
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccccccCCCCCccccc
Confidence            999999999999999999999999999999999998888887776653

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=5.5e-57  Score=430.64  Aligned_cols=435  Identities=46%  Similarity=0.780  Sum_probs=388.8

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676            3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN   82 (446)
Q Consensus         3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~   82 (446)
                      .++.+++.++|+|+..+..|+..++++++.+.+++.+.+++.|++|.|+++|..++++.++..|+|+|+|++.++++.+.
T Consensus        77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~  156 (529)
T 3tpo_A           77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK  156 (529)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            57899999999999999999999999998877888999999999999999998766589999999999999998999999


Q ss_pred             HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcccc----chhHHHHHHHHHHHh
Q 043676           83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHA----KLSMLRNATRTLSNF  158 (446)
Q Consensus        83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~----~~~~~~~a~~~L~~l  158 (446)
                      .+++.|+++.|+.+|.++++.+++.|+|+|+||+.+++.++..+.+.|++++++.++....    ...+++.++|+++++
T Consensus       157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl  236 (529)
T 3tpo_A          157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL  236 (529)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999995322    235788999999999


Q ss_pred             hcCC-CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHH
Q 043676          159 CRGK-PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRT  237 (446)
Q Consensus       159 ~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~  237 (446)
                      +.+. +........+++|.|+.++.+++++++..++++|.+++....+....+.+.|+++.|+.++.+++..++..++.+
T Consensus       237 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~a  316 (529)
T 3tpo_A          237 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA  316 (529)
T ss_dssp             HCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred             HhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHH
Confidence            9987 566666778999999999999999999999999999999988888888899999999999999999999999999


Q ss_pred             HHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHH
Q 043676          238 VGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKK  317 (446)
Q Consensus       238 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~  317 (446)
                      ++|++.+++.....+++.|+++.|+.++.++ +..++..|+|+|+|++.+++.....+++.|+++.|+.++.+++.+++.
T Consensus       317 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~  395 (529)
T 3tpo_A          317 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQK  395 (529)
T ss_dssp             HHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred             HHHHHccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHH
Confidence            9999999999999999999999999999998 899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhC
Q 043676          318 EAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAG  397 (446)
Q Consensus       318 ~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  397 (446)
                      .|+|+|+|++..+++++...+.+.|+++.|+++|+++|++++..++++|.++++.++...       ..+.+...+.++|
T Consensus       396 ~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-------~~~~~~~~iee~g  468 (529)
T 3tpo_A          396 AAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEECG  468 (529)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-------ChHHHHHHHHHCC
Confidence            999999999988889999999999999999999999999999999999999999877642       4566889999999


Q ss_pred             hHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCcccccccccccCCcc
Q 043676          398 GLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNEEEDALGSNVITNGKV  445 (446)
Q Consensus       398 ~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~  445 (446)
                      |+++|+.|++|+|++|+++|..+|++||.++|++++.+.|.+..+||.
T Consensus       469 gl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~~~~~~~  516 (529)
T 3tpo_A          469 GLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTSEGFA  516 (529)
T ss_dssp             CHHHHTGGGGCSSHHHHHHHHHHHHHHC--------------------
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccccccCCCCCCcccc
Confidence            999999999999999999999999999999999998899988777764

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=8.2e-50  Score=382.94  Aligned_cols=428  Identities=76%  Similarity=1.203  Sum_probs=391.4

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676            3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN   82 (446)
Q Consensus         3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~   82 (446)
                      .+|.|++.|.++++.++..|++.|+++++....+....+++.|++|.|+++|.+++++.++..|+++|++++.++++.+.
T Consensus        75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~  154 (528)
T 4b8j_A           75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK  154 (528)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence            58999999999999999999999999988764577889999999999999999876589999999999999998899999


Q ss_pred             HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 043676           83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK  162 (446)
Q Consensus        83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  162 (446)
                      .+++.|+++.|+.+|.++++.+++.|+|+|++++.+.+.++..+...|+++.++.++..+.++.++..++|+|.+++...
T Consensus       155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~  234 (528)
T 4b8j_A          155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK  234 (528)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred             HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999888899999999999999999976778999999999999999987


Q ss_pred             CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhh
Q 043676          163 PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIV  242 (446)
Q Consensus       163 ~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~  242 (446)
                      +........+++|.|+.++.++++.++..++++|++++...+...+.+.+.|+++.|+.++.++++.++..|+++|++++
T Consensus       235 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~  314 (528)
T 4b8j_A          235 PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV  314 (528)
T ss_dssp             SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence            77777778999999999999999999999999999999988888788899999999999999999999999999999999


Q ss_pred             cCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHH
Q 043676          243 TGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWA  322 (446)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a  322 (446)
                      .+++.....+++.|+++.|+.+|.++.++.++..|+|+|+|++.+++..+..+++.|+++.|+.++.++++.++..|+++
T Consensus       315 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~a  394 (528)
T 4b8j_A          315 TGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWA  394 (528)
T ss_dssp             TSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence            98888888899999999999999876578999999999999998888888999999999999999999999999999999


Q ss_pred             HHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHH
Q 043676          323 ISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKI  402 (446)
Q Consensus       323 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l  402 (446)
                      |++++..++++....+.+.|+++.|+.++.+++++++..++++|.+++...+.......  ...+++...+.+.|+++.+
T Consensus       395 L~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~l  472 (528)
T 4b8j_A          395 ISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAA--GDVNVFSQMIDEAEGLEKI  472 (528)
T ss_dssp             HHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHT--CSCCHHHHHHHHTTHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccc--ccccHHHHHHHHCCcHHHH
Confidence            99999887789999999999999999999999999999999999999998776432111  1356689999999999999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhcCCCCCcc
Q 043676          403 ENLQSHDNNEIHEKSVKIFKTYWCGRNEEE  432 (446)
Q Consensus       403 ~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~  432 (446)
                      ..+++++++++++.|.+++++||+.+++++
T Consensus       473 ~~L~~~~~~~v~~~a~~il~~~~~~e~~~~  502 (528)
T 4b8j_A          473 ENLQSHDNNEIYEKAVKILEAYWMDEEDDT  502 (528)
T ss_dssp             HHGGGCSSHHHHHHHHHHHHHHCC------
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHCCCccccc
Confidence            999999999999999999999998766543

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=7.3e-49  Score=376.14  Aligned_cols=433  Identities=53%  Similarity=0.821  Sum_probs=387.9

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCC-CChHHHHHHHHHHHHHcCCChhh
Q 043676            2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRE-DYPQLQYEAAWVLINIASGTSEN   80 (446)
Q Consensus         2 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~~~~~~a~~~L~~l~~~~~~~   80 (446)
                      +.++.+++.|+++++.++..|++.|+++++....+....+++.|++|.|+++|.++ + +.++..|+++|++++.++++.
T Consensus        87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~-~~v~~~A~~~L~~l~~~~~~~  165 (530)
T 1wa5_B           87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQP-EMLQLEAAWALTNIASGTSAQ  165 (530)
T ss_dssp             CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSC-HHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCC-HHHHHHHHHHHHHHhCCCHHH
Confidence            46899999999999999999999999998865456678889999999999999997 6 899999999999999988889


Q ss_pred             HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676           81 TNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR  160 (446)
Q Consensus        81 ~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  160 (446)
                      +..+++.|+++.|+.+|.++++.+++.|+|+|++++...+..+..+...|+++.++.++ .+.+..++..++|+|.+++.
T Consensus       166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~  244 (530)
T 1wa5_B          166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCR  244 (530)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999998888999999999999999999 55889999999999999998


Q ss_pred             CC-CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHH
Q 043676          161 GK-PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVG  239 (446)
Q Consensus       161 ~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~  239 (446)
                      +. +........+++|.|+.++.++++.++..++++|.+++...+.....+.+.|+++.|+.++.++++.++..|+++|+
T Consensus       245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~  324 (530)
T 1wa5_B          245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG  324 (530)
T ss_dssp             CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHH
Confidence            87 66677777899999999999999999999999999999888777788888999999999999999999999999999


Q ss_pred             HhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHH
Q 043676          240 NIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEA  319 (446)
Q Consensus       240 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a  319 (446)
                      +++.+++.....+++.|+++.++.+|.++ ++.++..|+|+|++++.+++.....+++.|+++.|+.++.++++.++..|
T Consensus       325 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a  403 (530)
T 1wa5_B          325 NIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA  403 (530)
T ss_dssp             HHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence            99998888888888999999999999999 89999999999999998888888889999999999999999999999999


Q ss_pred             HHHHHHhccCCCH--HHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhC
Q 043676          320 AWAISNATSGGTQ--EQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAG  397 (446)
Q Consensus       320 ~~aL~~l~~~~~~--~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  397 (446)
                      +++|++++..+.+  +....+.+.|+++.|+.++.+++++++..++++|.+++...+.......  ...+++...+.+.|
T Consensus       404 ~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~--~~~~~~~~~l~~~g  481 (530)
T 1wa5_B          404 CWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARG--LNINENADFIEKAG  481 (530)
T ss_dssp             HHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHT--CSSCHHHHHHHHTT
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhccc--ccccHHHHHHHHcC
Confidence            9999999987666  7888889999999999999999999999999999999988776421000  13456889999999


Q ss_pred             hHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCc-cccccccc
Q 043676          398 GLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNEE-EDALGSNV  439 (446)
Q Consensus       398 ~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~-~~~~~~~~  439 (446)
                      +++.|..|++++++++++.|..+|++||..+++| ++++.|+.
T Consensus       482 ~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~~~~~~~~~~~  524 (530)
T 1wa5_B          482 GMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDAVDETMAPQN  524 (530)
T ss_dssp             HHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC-----------
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHCCccccccccccCCCc
Confidence            9999999999999999999999999999887765 44567753

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=7.7e-47  Score=355.88  Aligned_cols=426  Identities=57%  Similarity=0.880  Sum_probs=382.0

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhc-CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQS-GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN   82 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~   82 (446)
                      +|.+++.++++++.++..|+..|+++++...++....+++. |++|.|++++++++++.++..|+++|.+++..+++...
T Consensus        22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~  101 (450)
T 2jdq_A           22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR  101 (450)
T ss_dssp             CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            78999999999999999999999998774335566777887 99999999999983389999999999999997888888


Q ss_pred             HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 043676           83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK  162 (446)
Q Consensus        83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  162 (446)
                      .+++.|+++.|+++++++++.+++.|+++|++++...+..+..+.+.|+++.++.++..+.+..++..++|+|++++...
T Consensus       102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~  181 (450)
T 2jdq_A          102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK  181 (450)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence            88899999999999999999999999999999999888889999999999999999954578999999999999999876


Q ss_pred             -CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHh
Q 043676          163 -PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI  241 (446)
Q Consensus       163 -~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l  241 (446)
                       +........+++|.++.++.++++.++..+++++.+++...++....+.+.|+++.|+.++.++++.++..|+++|+++
T Consensus       182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  261 (450)
T 2jdq_A          182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI  261 (450)
T ss_dssp             SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence             5555556689999999999999999999999999999998777777788889999999999999999999999999999


Q ss_pred             hcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHH
Q 043676          242 VTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAW  321 (446)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~  321 (446)
                      +.+.+...+.+++.|+++.++.++.++ ++.++..|+++|++++.+++.....+++.|+++.|+.++.+++++++..|++
T Consensus       262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~  340 (450)
T 2jdq_A          262 VTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAW  340 (450)
T ss_dssp             TTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             hhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence            998888777888899999999999998 8999999999999999888888888998999999999999999999999999


Q ss_pred             HHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHH
Q 043676          322 AISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEK  401 (446)
Q Consensus       322 aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  401 (446)
                      +|++++..++++....+.+.|+++.|++++++++++++..++++|.+++..++.......  ...+++...+.+.||++.
T Consensus       341 ~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~--~~~~~~~~~l~~~g~~~~  418 (450)
T 2jdq_A          341 AITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNG--TGINPYCALIEEAYGLDK  418 (450)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSC--SCCCHHHHHHHHHHCHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccc--cchhHHHHHHHHcCcHHH
Confidence            999999876778888888999999999999999999999999999999987765421100  134578999999999999


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhcCCCCCcc
Q 043676          402 IENLQSHDNNEIHEKSVKIFKTYWCGRNEEE  432 (446)
Q Consensus       402 l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~  432 (446)
                      |..++++++.++++.|..++++||+++++++
T Consensus       419 l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~  449 (450)
T 2jdq_A          419 IEFLQSHENQEIYQKAFDLIEHYFGTEDEDS  449 (450)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHCCC----
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHCCcccccC
Confidence            9999999999999999999999998777654

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=2.4e-42  Score=327.60  Aligned_cols=370  Identities=25%  Similarity=0.387  Sum_probs=326.2

Q ss_pred             CChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhh
Q 043676            2 GSFPALVAGVWS-DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSEN   80 (446)
Q Consensus         2 ~~i~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~   80 (446)
                      |++|.|+++|++ +++.+|..|+|+|.++++++ .+....+++.|++|.|+++|.+++ ++++..|+|+|+|++.++++.
T Consensus       100 G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~~~  177 (510)
T 3ul1_B          100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAF  177 (510)
T ss_dssp             THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence            789999999985 56899999999999999876 667888999999999999999999 899999999999999988999


Q ss_pred             HHHHHhcCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHH
Q 043676           81 TNVVIDHGAVPIFVKLLSSPS-----DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTL  155 (446)
Q Consensus        81 ~~~~~~~~~i~~L~~~L~~~~-----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L  155 (446)
                      +..+.+.|+++.|+.++.+++     ..+...++|++.+++.............++++.|+.++ .+.+++++..++|+|
T Consensus       178 r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~aL  256 (510)
T 3ul1_B          178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAI  256 (510)
T ss_dssp             HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHHH
Confidence            999999999999999998754     45788999999999976544334444556789999999 788999999999999


Q ss_pred             HHhhcCCC-CCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHH
Q 043676          156 SNFCRGKP-EPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPA  234 (446)
Q Consensus       156 ~~l~~~~~-~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a  234 (446)
                      .+++...+ ........++++.|+.++.+.+..++..+++++++++..++.....+.+.|+++.|+.++.++++.++..|
T Consensus       257 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A  336 (510)
T 3ul1_B          257 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA  336 (510)
T ss_dssp             HHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHH
T ss_pred             HHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHH
Confidence            99998763 22334557899999999999999999999999999999988888889999999999999999999999999


Q ss_pred             HHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCCc
Q 043676          235 LRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA-GNREQIQAVIDAGLIRPIVNLLQNAEF  313 (446)
Q Consensus       235 ~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~  313 (446)
                      +|+|+|++.+++.....+++.|+++.++.++.++ +..++.+|+|+|+|++. ++.+.+..+++.|+++.|++++++.++
T Consensus       337 ~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~  415 (510)
T 3ul1_B          337 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT  415 (510)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred             HHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCH
Confidence            9999999999999999999999999999999999 99999999999999987 578888899999999999999999999


Q ss_pred             chHHHHHHHHHHhccC----CC-HHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhh
Q 043676          314 DTKKEAAWAISNATSG----GT-QEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEA  375 (446)
Q Consensus       314 ~v~~~a~~aL~~l~~~----~~-~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~  375 (446)
                      +++..++++|.++...    +. ......+.+.|+++.|..+..+++.++++.|..+|.++|..++.
T Consensus       416 ~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~  482 (510)
T 3ul1_B          416 KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEE  482 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence            9999999999999752    12 23445566789999999999999999999999999999865443

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=9.4e-42  Score=325.52  Aligned_cols=370  Identities=25%  Similarity=0.384  Sum_probs=326.6

Q ss_pred             CChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhh
Q 043676            2 GSFPALVAGVWS-DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSEN   80 (446)
Q Consensus         2 ~~i~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~   80 (446)
                      |++|.|+++|++ +++.+|..|+|+|.++++++ ......+++.|++|.|+.++.+++ ++++..|+|+|+|++.++++.
T Consensus       119 G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~~~~~  196 (529)
T 3tpo_A          119 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGSAF  196 (529)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhccCHHH
Confidence            789999999974 56999999999999999875 566788999999999999999999 899999999999999988999


Q ss_pred             HHHHHhcCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHH
Q 043676           81 TNVVIDHGAVPIFVKLLSSPS-----DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTL  155 (446)
Q Consensus        81 ~~~~~~~~~i~~L~~~L~~~~-----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L  155 (446)
                      +..+.+.|+++.|+.++..++     ..+...++|++++++.............++++.|+.++ .+.+++++..++|+|
T Consensus       197 r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~aL  275 (529)
T 3tpo_A          197 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAI  275 (529)
T ss_dssp             HHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHH
T ss_pred             HHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHHH
Confidence            999999999999999998744     45788999999999976644444444556889999999 788999999999999


Q ss_pred             HHhhcCCC-CCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHH
Q 043676          156 SNFCRGKP-EPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPA  234 (446)
Q Consensus       156 ~~l~~~~~-~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a  234 (446)
                      .+++...+ ........+++|.|+.++.++++.++..+++++++++..++.....+.+.|+++.|+.++.++++.++..|
T Consensus       276 ~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a  355 (529)
T 3tpo_A          276 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA  355 (529)
T ss_dssp             HHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHH
T ss_pred             HHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHH
Confidence            99998763 23344557999999999999999999999999999999988888889999999999999999999999999


Q ss_pred             HHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCCc
Q 043676          235 LRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA-GNREQIQAVIDAGLIRPIVNLLQNAEF  313 (446)
Q Consensus       235 ~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~  313 (446)
                      +|+|+|++.+++.....+++.|+++.++.++.++ +..++.+|+|+|+|++. ++++.+..+++.|+++.|++++.+.++
T Consensus       356 ~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~  434 (529)
T 3tpo_A          356 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT  434 (529)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred             HHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCH
Confidence            9999999999999999999999999999999999 99999999999999987 578888899999999999999999999


Q ss_pred             chHHHHHHHHHHhccC----CC-HHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhh
Q 043676          314 DTKKEAAWAISNATSG----GT-QEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEA  375 (446)
Q Consensus       314 ~v~~~a~~aL~~l~~~----~~-~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~  375 (446)
                      +++..++++|.++...    +. ......+.+.|+++.|..+..+++.+++..|..+|.++|..++.
T Consensus       435 ~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~  501 (529)
T 3tpo_A          435 KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEE  501 (529)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence            9999999999999742    12 23445566889999999999999999999999999999865443

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=2.2e-39  Score=312.98  Aligned_cols=405  Identities=16%  Similarity=0.139  Sum_probs=334.8

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCCh-hh
Q 043676            2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTS-EN   80 (446)
Q Consensus         2 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~-~~   80 (446)
                      |.+|.|+.++.|+++.++..|++++.+++++  ...++.+++.|+ |.|..++++++ +.++..|+++|++++.... +.
T Consensus       290 G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~--~~~R~~I~~~gv-~~L~~Ll~s~~-~~vr~~Al~~L~kl~s~~~~d~  365 (810)
T 3now_A          290 GILQMILAMATTDDELQQRVACECLIAASSK--KDKAKALCEQGV-DILKRLYHSKN-DGIRVRALVGLCKLGSYGGQDA  365 (810)
T ss_dssp             THHHHHHHHHHSSCHHHHHHHHHHHHHHTTS--HHHHHTTHHHHH-HHHHHHTTCSC-HHHHHHHHHHHHHHHTTTTTTT
T ss_pred             chHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--cHHHHHHHHcCc-HHHHHHHcCCC-HHHHHHHHHHHHHhccccccCc
Confidence            6799999999999999999999999997665  567778888775 99999999888 8999999999999985221 22


Q ss_pred             HHHHHhcC----ChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHH
Q 043676           81 TNVVIDHG----AVPIFVKLLSSP--SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRT  154 (446)
Q Consensus        81 ~~~~~~~~----~i~~L~~~L~~~--~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~  154 (446)
                      ....++.|    .++.+.++|.++  ++++++.|+|+|.+++.+.+.......+.|+++.|+.++ ++.+..++..++++
T Consensus       366 ~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL-~s~d~~i~~~al~~  444 (810)
T 3now_A          366 AIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLA-RGGNQSCLYGVVTT  444 (810)
T ss_dssp             SCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHH-HTTCGGGHHHHHHH
T ss_pred             cccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHh-CCCChHHHHHHHHH
Confidence            21222233    356788888887  899999999999999966554444444579999999999 67889999999999


Q ss_pred             HHHhhcCCCCC---------------------------------ChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhcc
Q 043676          155 LSNFCRGKPEP---------------------------------PFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLAD  201 (446)
Q Consensus       155 L~~l~~~~~~~---------------------------------~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~  201 (446)
                      |.|++.+.+..                                 ......|++|.|+.+++++++.+++.++|+|+|++.
T Consensus       445 L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~  524 (810)
T 3now_A          445 FVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG  524 (810)
T ss_dssp             HHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            99999864211                                 122346899999999999999999999999999996


Q ss_pred             CCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhH--HHHhcCChHHHHHHhccCchHHHHHHHHH
Q 043676          202 GTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQ--CIINHGAVPYLLDMLVHNHEEIIKKEISW  279 (446)
Q Consensus       202 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~v~~~a~~  279 (446)
                      . ++....+.+.|+++.|+.++.++++..+..|+++|++++.+......  .....+++++|+.+|.++.+...+..|++
T Consensus       525 d-~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~  603 (810)
T 3now_A          525 L-KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLM  603 (810)
T ss_dssp             S-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHH
T ss_pred             C-HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHH
Confidence            5 55677799999999999999999999999999999999864332110  00113589999999986524445678999


Q ss_pred             HHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHH-cCChHHHHhcccCCCHHH
Q 043676          280 IISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVR-EGCVKPLCDLLLCSDPEI  358 (446)
Q Consensus       280 ~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~~  358 (446)
                      +|+|++.++++....+++.|+++.|+.++.++++.++..|+++|+|++.  .++....+.+ .|.++.|+.++.+++..+
T Consensus       604 AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~--~~~~~~~~v~~~g~l~~Lv~LL~s~d~~v  681 (810)
T 3now_A          604 ALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM--SEDVIKMFEGNNDRVKFLALLCEDEDEET  681 (810)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT--SHHHHHHHHSSSSHHHHHHHGGGCSSHHH
T ss_pred             HHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC--ChHHHHHHHhccCcHHHHHHHhcCCCHHH
Confidence            9999998888888899999999999999999999999999999999998  4566667665 688999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHH-hChHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 043676          359 VTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEE-AGGLEKIENLQSHDNNEIHEKSVKIFKTYWCG  427 (446)
Q Consensus       359 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  427 (446)
                      +..|+++|.++....+..             .+.+.+ .|+++.|.+|+.+++.++++.|.+++.++...
T Consensus       682 q~~Aa~ALanLt~~s~~~-------------~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~  738 (810)
T 3now_A          682 ATACAGALAIITSVSVKC-------------CEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA  738 (810)
T ss_dssp             HHHHHHHHHHHHHHCHHH-------------HHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCHHH-------------HHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence            999999999988743332             344555 89999999999999999999999999999764

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=1e-38  Score=306.81  Aligned_cols=400  Identities=18%  Similarity=0.196  Sum_probs=341.8

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhH
Q 043676            2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENT   81 (446)
Q Consensus         2 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~   81 (446)
                      |.+|.|+++|+++++.++..|+++|.+++... ......+.+.|++|.|++++.+++ ++++..++.+|.+++..+++.+
T Consensus       101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~  178 (529)
T 1jdh_A          101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  178 (529)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHH
Confidence            67999999999999999999999999999874 455677778999999999999988 8999999999999999889999


Q ss_pred             HHHHhcCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676           82 NVVIDHGAVPIFVKLLSSPS-DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR  160 (446)
Q Consensus        82 ~~~~~~~~i~~L~~~L~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  160 (446)
                      ..+.+.|+++.|+.++++++ ...+..++.+|.+++. .+..+..+.+.|+++.++.++ .+.++.+++.++|+|.+++.
T Consensus       179 ~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~  256 (529)
T 1jdh_A          179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  256 (529)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHhc
Confidence            99999999999999998754 5677788999999995 455788889999999999999 66689999999999999998


Q ss_pred             CCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC--CCccchhHHHHHH
Q 043676          161 GKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLTPALRTV  238 (446)
Q Consensus       161 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~--~~~~~~~~a~~~l  238 (446)
                      ..+..  ....+++|.++.++.+++++++..++++|++++..+++....+.+.|+++.|+.++.+  .++.++..|+++|
T Consensus       257 ~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L  334 (529)
T 1jdh_A          257 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  334 (529)
T ss_dssp             TCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence            86432  2346899999999999999999999999999999888788889999999999999976  3368999999999


Q ss_pred             HHhhcCCch---hhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcch
Q 043676          239 GNIVTGDDF---QTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDT  315 (446)
Q Consensus       239 ~~l~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v  315 (446)
                      ++++..++.   .+..+.+.|+++.++.++.++.+..++..++|+|+|++.++ .....+.+.|+++.|+.++.++++++
T Consensus       335 ~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v  413 (529)
T 1jdh_A          335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDT  413 (529)
T ss_dssp             HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG-GGHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcCh-hhhHHHHHcCCHHHHHHHHHHHhHHH
Confidence            999986544   35577789999999999998834699999999999998754 44577889999999999999877777


Q ss_pred             HHHHHHHHHH----------------------hccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhh
Q 043676          316 KKEAAWAISN----------------------ATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVG  373 (446)
Q Consensus       316 ~~~a~~aL~~----------------------l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~  373 (446)
                      ++.|+|++.|                      ++.  .++.+..+.+.|+++.|+.++.+++++++..+.++|.++... 
T Consensus       414 ~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~--~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~-  490 (529)
T 1jdh_A          414 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-  490 (529)
T ss_dssp             C-----------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-
T ss_pred             HHHHhcccCchhhhccccHHHHHHHHHHHHHHHhc--CchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC-
Confidence            7766665554                      554  456677788999999999999999999999999999997643 


Q ss_pred             hhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 043676          374 EAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTY  424 (446)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~  424 (446)
                      +.             +...+.+.|+++.|..++.++++++++.|.+++.++
T Consensus       491 ~~-------------~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          491 KE-------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             HH-------------HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             HH-------------HHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence            21             468899999999999999999999999999999875

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=1.3e-39  Score=314.41  Aligned_cols=365  Identities=15%  Similarity=0.109  Sum_probs=316.4

Q ss_pred             hHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHH-hcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCCh--
Q 043676            4 FPALVAGVWSD--DNSLQLEATTLSRKLLSFDRNPPIEKVI-QSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTS--   78 (446)
Q Consensus         4 i~~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~--   78 (446)
                      ++.|+++|.++  |++++..|++.|..++..  .+....+. +.|++|.|++++++++ +.++..|+++|+|++.+++  
T Consensus       379 v~~l~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~q  455 (810)
T 3now_A          379 AEACRRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEKQ  455 (810)
T ss_dssp             HHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCCC
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchhh
Confidence            56788888887  899999999999998765  44445555 5799999999999988 8999999999999998442  


Q ss_pred             ---------------------------hhH---HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHH
Q 043676           79 ---------------------------ENT---NVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLS  128 (446)
Q Consensus        79 ---------------------------~~~---~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~  128 (446)
                                                 ..+   ..+++.|+++.|+.+++++++.+++.|+|+|+|++. ++.++..+.+
T Consensus       456 ~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~  534 (810)
T 3now_A          456 EMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQ  534 (810)
T ss_dssp             CCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHH
T ss_pred             hhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHH
Confidence                                       112   678899999999999999999999999999999995 5668999999


Q ss_pred             cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh---hhhhhhHHHHHHhhcCC-CHhHHHHHHHHHHHhccCCc
Q 043676          129 QGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPF---DQVRPALPALAQLVHSN-DEDVLTYACWSLSYLADGTN  204 (446)
Q Consensus       129 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~---~~~~~~~~~l~~ll~~~-~~~v~~~~~~~l~~l~~~~~  204 (446)
                      .|++++|+.++ .+.++..++.|+|+|.+++.+......   ....+++|.|+.+|.++ +...+..++++|.|++..++
T Consensus       535 ~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d  613 (810)
T 3now_A          535 EGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNE  613 (810)
T ss_dssp             TTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred             CCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCH
Confidence            99999999999 667788999999999999876421111   12357899999999866 34456789999999999988


Q ss_pred             HHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHh-cCChHHHHHHhccCchHHHHHHHHHHHHH
Q 043676          205 DKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIIN-HGAVPYLLDMLVHNHEEIIKKEISWIISN  283 (446)
Q Consensus       205 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~v~~~a~~~l~~  283 (446)
                      +....+++.|+++.|+.++.++++.++..|+++++|++.+.+ ....+.+ .|.++.|+.++.++ +..++.+|+|+|+|
T Consensus       614 ~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~-~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALan  691 (810)
T 3now_A          614 SVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED-VIKMFEGNNDRVKFLALLCEDE-DEETATACAGALAI  691 (810)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHH-HHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChH-HHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence            788889999999999999999999999999999999998654 4555554 78999999999998 99999999999999


Q ss_pred             HhcCCHHHHHHHHH-cCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCC---CHHHH
Q 043676          284 ITAGNREQIQAVID-AGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCS---DPEIV  359 (446)
Q Consensus       284 l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~---~~~~~  359 (446)
                      ++.+++..++.+++ .|+++.|+.++.+++.+++..|+|+|.|++.. ++++...+.+.|++++|.++++..   ++++.
T Consensus       692 Lt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~  770 (810)
T 3now_A          692 ITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAR  770 (810)
T ss_dssp             HHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHH
T ss_pred             HhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHH
Confidence            99878888899998 89999999999999999999999999999875 678899999999999999999655   78999


Q ss_pred             HHHHHHHHHHHHhhhhh
Q 043676          360 TVCLIGLENILKVGEAE  376 (446)
Q Consensus       360 ~~~~~~l~~l~~~~~~~  376 (446)
                      +.++++|.++++.+.-.
T Consensus       771 e~Al~aL~~ll~~g~~~  787 (810)
T 3now_A          771 EVATQCLAAAERYRIIE  787 (810)
T ss_dssp             HHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHhCCCcc
Confidence            99999999999876654

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=1.4e-39  Score=303.79  Aligned_cols=365  Identities=18%  Similarity=0.200  Sum_probs=308.4

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHH
Q 043676           46 VVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDL  125 (446)
Q Consensus        46 ~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~  125 (446)
                      .+|.|+++|++++ ++++..|+++|.+++.+++..+..+.+.|+++.|+++|+++++.++..|+++|.|++..+++.+..
T Consensus         3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            4899999999999 899999999999999877778889999999999999999999999999999999999888889999


Q ss_pred             HHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc--------C--------CCHhHH
Q 043676          126 VLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH--------S--------NDEDVL  189 (446)
Q Consensus       126 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~--------~--------~~~~v~  189 (446)
                      +.+.|+++.|+.+|..+.++++++.++|+|+|++.+...+..... |++|.|+.++.        +        .++.+.
T Consensus        82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~  160 (457)
T 1xm9_A           82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence            999999999999995478899999999999999998544444445 99999999993        2        246777


Q ss_pred             HHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhcCC------CCccchhHHHHHHHHhhcC------------------
Q 043676          190 TYACWSLSYLADGTNDKIQAVIEA-GVCPRLVELLGH------PSPSVLTPALRTVGNIVTG------------------  244 (446)
Q Consensus       190 ~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~l~~ll~~------~~~~~~~~a~~~l~~l~~~------------------  244 (446)
                      ..++++|.+++.. ++....+.+. |+++.|+.++.+      .+..+...++.++.+++..                  
T Consensus       161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~  239 (457)
T 1xm9_A          161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence            8999999999987 6677778887 999999999985      4667888899999998732                  


Q ss_pred             --------------------------------CchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHH--
Q 043676          245 --------------------------------DDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNRE--  290 (446)
Q Consensus       245 --------------------------------~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~--  290 (446)
                                                      .+...+.+++.++++.++.+|.++.++.+++.|+|+|+|++.++..  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~  319 (457)
T 1xm9_A          240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence                                            1122334456677889999998775789999999999999975422  


Q ss_pred             -HH-HHHH-HcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCC------HHHHHH
Q 043676          291 -QI-QAVI-DAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSD------PEIVTV  361 (446)
Q Consensus       291 -~~-~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~------~~~~~~  361 (446)
                       .. +..+ +.|++|.|++++.+++.++++.|+++|.+++..  ++. ..++..++++.|+++|...+      +++...
T Consensus       320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~~~-~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~  396 (457)
T 1xm9_A          320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PLL-HRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--GGG-HHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--HHH-HHHHHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence             22 3344 689999999999999999999999999999874  333 44456689999999998764      368889


Q ss_pred             HHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCC-CHHHHHHHHHHHHHhcCCCC
Q 043676          362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHD-NNEIHEKSVKIFKTYWCGRN  429 (446)
Q Consensus       362 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~~~~~~~  429 (446)
                      ++++|.+++...+.             +...+.+.|+++.|.+|+.++ ++++++.|.++|++||...+
T Consensus       397 ~l~~l~ni~~~~~~-------------~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~  452 (457)
T 1xm9_A          397 ACYTVRNLMASQPQ-------------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HHHHHHHHHTTCTH-------------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HHHHHHHHHhcCHH-------------HHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence            99999999865544             468889999999999999999 99999999999999997654

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1.6e-39  Score=297.76  Aligned_cols=365  Identities=18%  Similarity=0.171  Sum_probs=295.6

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCC-----------hHHHHHHHHHH
Q 043676            2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDY-----------PQLQYEAAWVL   70 (446)
Q Consensus         2 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~-----------~~~~~~a~~~L   70 (446)
                      +.++.|+.++.+.|+.-   ..+.|..+...  .+.+..+++.|++|.|+++|+..+.           ++++..|+|+|
T Consensus        32 ~~~~~l~~~~~~~~~~~---~~~~ll~~~~~--~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al  106 (458)
T 3nmz_A           32 EMVYSLLSMLGTHDKDD---MSRTLLAMSSS--QDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAAL  106 (458)
T ss_dssp             -------------CCHH---HHHHHHHHHSS--TTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHH---HHHHHHHHHcC--CcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHH
Confidence            46788899998888763   55566655554  4556889999999999999997542           69999999999


Q ss_pred             HHHcCCChhhHHHHHhcCCh----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHHhhCCChHHHHHH
Q 043676           71 INIASGTSENTNVVIDHGAV----------PIFVKLLSSPS--DD-----VRE-------QAVWALGNVAGDSPRCRDLV  126 (446)
Q Consensus        71 ~~l~~~~~~~~~~~~~~~~i----------~~L~~~L~~~~--~~-----v~~-------~a~~~l~~l~~~~~~~~~~~  126 (446)
                      .|++.+.++......+.+++          +.+++++.++.  .+     +++       +|+|+|+|++.+ +++|+.+
T Consensus       107 ~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i  185 (458)
T 3nmz_A          107 HNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAM  185 (458)
T ss_dssp             HHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHH
T ss_pred             HHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHH
Confidence            99999888888887777777          66667776642  22     555       999999999854 8899999


Q ss_pred             HHcCChHHHHHHhcc----------ccchhHHHHHHHHHHHhhcCCC-CCChhh-hhhhHHHHHHhhcCCCHhHHHHHHH
Q 043676          127 LSQGALIPLLAELNE----------HAKLSMLRNATRTLSNFCRGKP-EPPFDQ-VRPALPALAQLVHSNDEDVLTYACW  194 (446)
Q Consensus       127 ~~~~~i~~l~~~l~~----------~~~~~~~~~a~~~L~~l~~~~~-~~~~~~-~~~~~~~l~~ll~~~~~~v~~~~~~  194 (446)
                      .+.|++++|+.++..          +.++.+++.++|+|.|++.+.+ ...... ..|++|.|+.+|++++++++..+++
T Consensus       186 ~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~  265 (458)
T 3nmz_A          186 NELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIAS  265 (458)
T ss_dssp             HHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHH
Confidence            999999999999942          2356789999999999998863 222222 4577999999999999999999999


Q ss_pred             HHHHhccC-CcHHHHHHHHhCcHHHHHHhc-CCCCccchhHHHHHHHHhhcCCchhhHHHH-hcCChHHHHHHhccCchH
Q 043676          195 SLSYLADG-TNDKIQAVIEAGVCPRLVELL-GHPSPSVLTPALRTVGNIVTGDDFQTQCII-NHGAVPYLLDMLVHNHEE  271 (446)
Q Consensus       195 ~l~~l~~~-~~~~~~~~~~~~~~~~l~~ll-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~  271 (446)
                      +|++++.. ++.....+.+.|+++.|+.+| .+.+..++..|+.+|+||+.+++.....+. ..|+++.|+.+|.+..+.
T Consensus       266 aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~  345 (458)
T 3nmz_A          266 VLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQT  345 (458)
T ss_dssp             HHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSS
T ss_pred             HHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCc
Confidence            99999985 456667788999999999975 557788999999999999986666666666 789999999999876232


Q ss_pred             ---HHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChH
Q 043676          272 ---IIKKEISWIISNITA---GNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVK  345 (446)
Q Consensus       272 ---~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~  345 (446)
                         .+++.|+|+|.|++.   ++++.++.+.+.|+++.|+.++.+++..+++.|+++|.|++.. ++++...+.+.|+++
T Consensus       346 ~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~I~  424 (458)
T 3nmz_A          346 NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVS  424 (458)
T ss_dssp             STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHHTHHH
T ss_pred             chHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHH
Confidence               589999999999986   7889999999999999999999999999999999999999864 688899999999999


Q ss_pred             HHHhcccCCCHHHHHHHHHHHHHHHHhh
Q 043676          346 PLCDLLLCSDPEIVTVCLIGLENILKVG  373 (446)
Q Consensus       346 ~L~~ll~~~~~~~~~~~~~~l~~l~~~~  373 (446)
                      .|++++.++++.++..|+++|.+++...
T Consensus       425 ~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          425 MLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999998764

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=6.2e-38  Score=306.75  Aligned_cols=404  Identities=17%  Similarity=0.181  Sum_probs=348.7

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhH
Q 043676            2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENT   81 (446)
Q Consensus         2 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~   81 (446)
                      |.+|.|+++|+++++.++..|+++|.+++... ......+.+.|+++.|++++++++ +.++..++.+|.+++..+++.+
T Consensus        98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~  175 (644)
T 2z6h_A           98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  175 (644)
T ss_dssp             THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHHH
Confidence            67899999999999999999999999999875 556677788999999999999998 8999999999999998789999


Q ss_pred             HHHHhcCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676           82 NVVIDHGAVPIFVKLLSSPS-DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR  160 (446)
Q Consensus        82 ~~~~~~~~i~~L~~~L~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  160 (446)
                      ..+.+.|+++.|+.++++.+ ..++..++.+|++++. .+..+..+.+.|+++.++.++ .+.+..+++.++|+|.+++.
T Consensus       176 ~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~  253 (644)
T 2z6h_A          176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  253 (644)
T ss_dssp             HHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhh
Confidence            99999999999999999854 6788999999999995 556788999999999999999 66789999999999999998


Q ss_pred             CCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCC--ccchhHHHHHH
Q 043676          161 GKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPS--PSVLTPALRTV  238 (446)
Q Consensus       161 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~~a~~~l  238 (446)
                      ..+..  ....++++.|+.++.+.+++++..++++|++++...+.....+.+.|+++.|+.++.+.+  +.++..|+++|
T Consensus       254 ~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL  331 (644)
T 2z6h_A          254 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  331 (644)
T ss_dssp             GCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence            76332  344689999999999999999999999999999988777888999999999999998733  68999999999


Q ss_pred             HHhhcCCch---hhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCC---
Q 043676          239 GNIVTGDDF---QTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAE---  312 (446)
Q Consensus       239 ~~l~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~---  312 (446)
                      ++++...+.   ....+.+.++++.++.+|.++.+..+++.|+|+|+|++.++ .....+++.|+++.|++++.+.+   
T Consensus       332 ~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~-~~~~~i~~~~~i~~Lv~lL~~~~~~v  410 (644)
T 2z6h_A          332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDT  410 (644)
T ss_dssp             HHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG-GGHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCH-HHHHHHHHcCCHHHHHHHHhccchhh
Confidence            999975442   33446788999999999998744799999999999998764 34478889999999999998743   


Q ss_pred             -------------------cchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhh
Q 043676          313 -------------------FDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVG  373 (446)
Q Consensus       313 -------------------~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~  373 (446)
                                         .+++..++.+|.+++.  ++..+..+.+.|+++.|++++.+.+++++..++++|.++....
T Consensus       411 r~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~  488 (644)
T 2z6h_A          411 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK  488 (644)
T ss_dssp             TTC----------CCSSCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSH
T ss_pred             hhHhhhccccchhcccccHHHHHHHHHHHHHHHhc--CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCH
Confidence                               3466677888888876  4577778889999999999999999999999999999987532


Q ss_pred             hhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 043676          374 EAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGR  428 (446)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~  428 (446)
                       .             ++..+.+.|+++.|..++.++++++++.|.++|.++....
T Consensus       489 -~-------------~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~  529 (644)
T 2z6h_A          489 -E-------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK  529 (644)
T ss_dssp             -H-------------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTS
T ss_pred             -H-------------HHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence             1             4688999999999999999999999888777777765544

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=1.7e-38  Score=304.45  Aligned_cols=369  Identities=25%  Similarity=0.330  Sum_probs=327.4

Q ss_pred             CChHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhh
Q 043676            2 GSFPALVAGVWSDD-NSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSEN   80 (446)
Q Consensus         2 ~~i~~l~~~l~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~   80 (446)
                      |.+|.|+++|.+++ +.++..|+++|.+++... .+....+++.|++|.|+.+|.+++ +.++..|+++|++++..++..
T Consensus       117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~  194 (528)
T 4b8j_A          117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVWALGNVAGDSPKC  194 (528)
T ss_dssp             TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHTCHHH
T ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence            68999999999887 999999999999999864 566778889999999999999988 899999999999999878889


Q ss_pred             HHHHHhcCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 043676           81 TNVVIDHGAVPIFVKLL-SSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFC  159 (446)
Q Consensus        81 ~~~~~~~~~i~~L~~~L-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  159 (446)
                      +..+.+.|+++.|+.++ .++++.++..++|+|++++...+.. ......++++.++.++ .+.++.++..++++|.+++
T Consensus       195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~  272 (528)
T 4b8j_A          195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLI-HSNDEEVLTDACWALSYLS  272 (528)
T ss_dssp             HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999 5688999999999999999765432 2344578999999999 7789999999999999999


Q ss_pred             cCCCCC-ChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC-CccchhHHHHH
Q 043676          160 RGKPEP-PFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHP-SPSVLTPALRT  237 (446)
Q Consensus       160 ~~~~~~-~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~~~~~a~~~  237 (446)
                      ...+.. ......++++.|+.++.++++.++..++++|++++...+...+.+.+.|+++.|+.++.++ ++.++..|+++
T Consensus       273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~  352 (528)
T 4b8j_A          273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT  352 (528)
T ss_dssp             SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence            775322 2344568999999999999999999999999999998888888888999999999999998 89999999999


Q ss_pred             HHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCCcchH
Q 043676          238 VGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG-NREQIQAVIDAGLIRPIVNLLQNAEFDTK  316 (446)
Q Consensus       238 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~  316 (446)
                      |+|++.+++.....+++.++++.|+.++.++ +..++..|+|+|+|++.. +++....+++.|+++.|+.++.+.+++++
T Consensus       353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~  431 (528)
T 4b8j_A          353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIV  431 (528)
T ss_dssp             HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred             HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHH
Confidence            9999998888888888999999999999998 999999999999999875 78888899999999999999999999999


Q ss_pred             HHHHHHHHHhccCCCH----------HHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhh
Q 043676          317 KEAAWAISNATSGGTQ----------EQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEA  375 (446)
Q Consensus       317 ~~a~~aL~~l~~~~~~----------~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~  375 (446)
                      ..++++|.+++.....          .....+.+.|+++.+..+.++++++++..+.+++.+++...+.
T Consensus       432 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~~  500 (528)
T 4b8j_A          432 TVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEED  500 (528)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence            9999999999874322          2466777889999999999999999999999999998876544

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=3.4e-38  Score=302.17  Aligned_cols=370  Identities=24%  Similarity=0.315  Sum_probs=326.3

Q ss_pred             CChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhh
Q 043676            2 GSFPALVAGVWSD-DNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSEN   80 (446)
Q Consensus         2 ~~i~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~   80 (446)
                      |.+|.|+++|.++ ++.++..|+++|.+++... .+....+.+.|+++.|+.+|.+++ +.++..|+++|++++..+++.
T Consensus       130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~~  207 (530)
T 1wa5_B          130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY  207 (530)
T ss_dssp             TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCccc
Confidence            6899999999997 8999999999999998864 455677888999999999999988 899999999999999977899


Q ss_pred             HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676           81 TNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR  160 (446)
Q Consensus        81 ~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  160 (446)
                      +..+...|+++.|+.++.++++.++..++|+|++++.............++++.++.++ .+.++.++..++|+|.+++.
T Consensus       208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~  286 (530)
T 1wa5_B          208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD  286 (530)
T ss_dssp             HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999966512223445678999999999 67789999999999999998


Q ss_pred             CCCC-CChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHH
Q 043676          161 GKPE-PPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVG  239 (446)
Q Consensus       161 ~~~~-~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~  239 (446)
                      ..+. .......++++.|+.++.+.++.++..++++|++++...+...+.+.+.|+++.|+.++.++++.++..|+++|+
T Consensus       287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~  366 (530)
T 1wa5_B          287 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS  366 (530)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            7522 222334589999999999999999999999999999988878888888999999999999999999999999999


Q ss_pred             HhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC-CH--HHHHHHHHcCChHHHHHHHhcCCcchH
Q 043676          240 NIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG-NR--EQIQAVIDAGLIRPIVNLLQNAEFDTK  316 (446)
Q Consensus       240 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~-~~--~~~~~~~~~~~i~~L~~ll~~~~~~v~  316 (446)
                      +++.+++.....+++.++++.|+.++.++ ++.++..|+|+|++++.. ++  +....+++.|+++.|+.++.+.++.++
T Consensus       367 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~  445 (530)
T 1wa5_B          367 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII  445 (530)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHH
Confidence            99998888888888999999999999988 899999999999999873 44  677888899999999999999999999


Q ss_pred             HHHHHHHHHhccCCCH----------HHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhh
Q 043676          317 KEAAWAISNATSGGTQ----------EQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEA  375 (446)
Q Consensus       317 ~~a~~aL~~l~~~~~~----------~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~  375 (446)
                      ..++++|.+++.....          .....+.+.|+++.|..++.+++++++..+.++|.+++...+.
T Consensus       446 ~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~  514 (530)
T 1wa5_B          446 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEED  514 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred             HHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcccc
Confidence            9999999999874322          2356677889999999999999999999999999998875443

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=3.3e-39  Score=301.32  Aligned_cols=363  Identities=16%  Similarity=0.182  Sum_probs=302.2

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676            3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN   82 (446)
Q Consensus         3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~   82 (446)
                      .+|.|+++|+++++.+|..|+++|.+++..+ .+....+.+.|++|.|+++|++++ +.++..|+++|.|++.++++++.
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~   80 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence            5899999999999999999999999988653 344558899999999999999988 89999999999999997799999


Q ss_pred             HHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcc--------c-------cchh
Q 043676           83 VVIDHGAVPIFVKLLS-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE--------H-------AKLS  146 (446)
Q Consensus        83 ~~~~~~~i~~L~~~L~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--------~-------~~~~  146 (446)
                      .+++.|+++.|+++|. ++++++++.++|+|+|++.. +..+..+.+ |+++.|+.++..        .       .++.
T Consensus        81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~  158 (457)
T 1xm9_A           81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence            9999999999999999 78999999999999999977 667888888 999999999931        1       3567


Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhhh-hhHHHHHHhhcC------CCHhHHHHHHHHHHHhccCC----------------
Q 043676          147 MLRNATRTLSNFCRGKPEPPFDQVR-PALPALAQLVHS------NDEDVLTYACWSLSYLADGT----------------  203 (446)
Q Consensus       147 ~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~l~~ll~~------~~~~v~~~~~~~l~~l~~~~----------------  203 (446)
                      +++.++|+|+|++.+.......... |+++.|+.++++      .+.++.+.++.++.+++...                
T Consensus       159 v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~  238 (457)
T 1xm9_A          159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR  238 (457)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccc
Confidence            8889999999999874333333334 999999999985      46678888999999886321                


Q ss_pred             ----------------------------------cHHHHHHHHhCcHHHHHHhcCC-CCccchhHHHHHHHHhhcCCchh
Q 043676          204 ----------------------------------NDKIQAVIEAGVCPRLVELLGH-PSPSVLTPALRTVGNIVTGDDFQ  248 (446)
Q Consensus       204 ----------------------------------~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~  248 (446)
                                                        +...+.+.+.|+++.++.+|.+ .++.+++.|+|+|+|++.++...
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~  318 (457)
T 1xm9_A          239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM  318 (457)
T ss_dssp             ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred             cccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcc
Confidence                                              0111223445678888888876 45788999999999999876543


Q ss_pred             h----HHHH-hcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCc------chHH
Q 043676          249 T----QCII-NHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEF------DTKK  317 (446)
Q Consensus       249 ~----~~~~-~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~------~v~~  317 (446)
                      .    +..+ +.++++.|+++|.++ +.+++.+|+|+|.|++.+ ++ ...++..++++.|++++.++++      ++..
T Consensus       319 ~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~-~~-~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~  395 (457)
T 1xm9_A          319 SSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH-PL-LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILS  395 (457)
T ss_dssp             HHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS-GG-GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred             hHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcC-HH-HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHH
Confidence            2    3334 689999999999999 999999999999999874 33 3455666899999999998754      5788


Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCC-CHHHHHHHHHHHHHHHHhh
Q 043676          318 EAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCS-DPEIVTVCLIGLENILKVG  373 (446)
Q Consensus       318 ~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~~~~~~~~~l~~l~~~~  373 (446)
                      .++++|.++... ++++...+.+.|+++.|++++.++ +++++..|.++|.+++...
T Consensus       396 ~~l~~l~ni~~~-~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~  451 (457)
T 1xm9_A          396 SACYTVRNLMAS-QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK  451 (457)
T ss_dssp             HHHHHHHHHHTT-CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred             HHHHHHHHHHhc-CHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence            999999999876 457788888899999999999999 9999999999999988643

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=2.7e-38  Score=297.58  Aligned_cols=368  Identities=25%  Similarity=0.308  Sum_probs=323.1

Q ss_pred             CChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhh
Q 043676            2 GSFPALVAGVWSD-DNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSEN   80 (446)
Q Consensus         2 ~~i~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~   80 (446)
                      |.+|.|++.|+++ ++.++..|+++|.+++... .+....+.+.|++|.|++++++++ +.++..|+++|++++..+++.
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~  141 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC  141 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence            5789999999998 8999999999999998864 455667788999999999999998 899999999999999988889


Q ss_pred             HHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC-hHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHh
Q 043676           81 TNVVIDHGAVPIFVKLLSS-PSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNF  158 (446)
Q Consensus        81 ~~~~~~~~~i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l  158 (446)
                      +..+.+.|+++.|+.++.+ +++.++..++++|++++... +...... ..++++.++.++ .+.++.++..++|+|.++
T Consensus       142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l  219 (450)
T 2jdq_A          142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLL-FVSDTDVLADACWALSYL  219 (450)
T ss_dssp             HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence            9999999999999999996 78999999999999999654 3222222 267899999999 677899999999999999


Q ss_pred             hcCC-CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHH
Q 043676          159 CRGK-PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRT  237 (446)
Q Consensus       159 ~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~  237 (446)
                      +... +........++++.++.++.++++.++..++++|++++...+...+.+.+.|+++.++.++.++++.++..|+++
T Consensus       220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~  299 (450)
T 2jdq_A          220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT  299 (450)
T ss_dssp             TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence            9875 222333446899999999999999999999999999999888777778888999999999999999999999999


Q ss_pred             HHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCCcchH
Q 043676          238 VGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG-NREQIQAVIDAGLIRPIVNLLQNAEFDTK  316 (446)
Q Consensus       238 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~  316 (446)
                      |++++.+++...+.+++.++++.++.++.++ ++.+|..|+|+|++++.+ +++....+++.|+++.|+.++++++++++
T Consensus       300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  378 (450)
T 2jdq_A          300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV  378 (450)
T ss_dssp             HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHH
Confidence            9999998888888888899999999999998 899999999999999874 67888888889999999999999999999


Q ss_pred             HHHHHHHHHhccCCCH----------HHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhh
Q 043676          317 KEAAWAISNATSGGTQ----------EQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGE  374 (446)
Q Consensus       317 ~~a~~aL~~l~~~~~~----------~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~  374 (446)
                      ..|+++|.+++.....          .....+.+.|+++.|..++++++++++..+..+|.+++...+
T Consensus       379 ~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~  446 (450)
T 2jdq_A          379 QVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTED  446 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC-
T ss_pred             HHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence            9999999999874322          234567788999999999999999999999999999986543

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=9.1e-37  Score=302.61  Aligned_cols=419  Identities=17%  Similarity=0.181  Sum_probs=355.1

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhH
Q 043676            2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENT   81 (446)
Q Consensus         2 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~   81 (446)
                      |++|.|++.|+++++.++..|+++|.+++... ......+.+.|+++.|++++.+++ ..++..++.+|.+++..+++.+
T Consensus       234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~  311 (780)
T 2z6g_A          234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  311 (780)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHH
Confidence            67999999999999999999999999999874 455666778999999999999988 8999999999999998789999


Q ss_pred             HHHHhcCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676           82 NVVIDHGAVPIFVKLLSSPS-DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR  160 (446)
Q Consensus        82 ~~~~~~~~i~~L~~~L~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  160 (446)
                      ..+.+.|+++.|+.++++.+ ...+..++.++.+++. .+..+..+.+.|+++.|+.++ .+.+..+++.++++|.+++.
T Consensus       312 ~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~  389 (780)
T 2z6g_A          312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  389 (780)
T ss_dssp             HHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHhc
Confidence            99999999999999999855 5567788999999995 455788888999999999999 66788999999999999998


Q ss_pred             CCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCc-cchhHHHHHH
Q 043676          161 GKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH-PSP-SVLTPALRTV  238 (446)
Q Consensus       161 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~-~~~~~a~~~l  238 (446)
                      ..+.  .....++++.|+.++.+.++.++..++++|++++...+.....+.+.|+++.|+.++.+ .+. .++..|+++|
T Consensus       390 ~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL  467 (780)
T 2z6g_A          390 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  467 (780)
T ss_dssp             TCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            7633  23347899999999999999999999999999999888788888889999999999987 333 8999999999


Q ss_pred             HHhhcCCchh---hHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCC---
Q 043676          239 GNIVTGDDFQ---TQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAE---  312 (446)
Q Consensus       239 ~~l~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~---  312 (446)
                      ++++...+..   ...+...++++.|+.+|.++..+.++..|+|+|+|++.+ +.....+.+.|+++.|++++.+++   
T Consensus       468 ~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~  546 (780)
T 2z6g_A          468 RHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDT  546 (780)
T ss_dssp             HHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS-HHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHHhcchhH
Confidence            9998765442   346778899999999999883459999999999999875 455577889999999999997643   


Q ss_pred             -------------------cchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhh
Q 043676          313 -------------------FDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVG  373 (446)
Q Consensus       313 -------------------~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~  373 (446)
                                         .+++..++.+|++++.  ++..+..+.+.|+++.|++++.+.++.++..++.+|.++....
T Consensus       547 ~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~  624 (780)
T 2z6g_A          547 QRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK  624 (780)
T ss_dssp             HHTTC------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSH
T ss_pred             HHHHhhccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCH
Confidence                               3466778888888875  5677778889999999999999999999999999999987432


Q ss_pred             hhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCcc-----cccccccccCC
Q 043676          374 EAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNEEE-----DALGSNVITNG  443 (446)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~-----~~~~~~~~~~~  443 (446)
                      +              ++..+.+.|+++.|..++.++++++++.|.++|.++.......-     .++.+++|.++
T Consensus       625 ~--------------~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~~~~~~l~~~ll~~l~~~~  685 (780)
T 2z6g_A          625 E--------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTE  685 (780)
T ss_dssp             H--------------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHC----
T ss_pred             H--------------HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHhhhccccHHHHHHHHhCC
Confidence            1              47899999999999999999999999999999999887654332     24556666654

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=9.4e-38  Score=292.00  Aligned_cols=366  Identities=19%  Similarity=0.202  Sum_probs=302.4

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCC-Chhh
Q 043676            2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASG-TSEN   80 (446)
Q Consensus         2 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~   80 (446)
                      +.+|.|+++|.++++.+|..|+++|.+++... .+....+.+.|++|.|+++|.+++ ++++..|+++|.|++.+ ++++
T Consensus        48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~n  125 (584)
T 3l6x_A           48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDN  125 (584)
T ss_dssp             CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHH
T ss_pred             ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHH
Confidence            46999999999999999999999999998764 667888999999999999999999 99999999999999984 6899


Q ss_pred             HHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhc-----------------cc
Q 043676           81 TNVVIDHGAVPIFVKLLSS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELN-----------------EH  142 (446)
Q Consensus        81 ~~~~~~~~~i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~-----------------~~  142 (446)
                      +..+++.|+++.|+.+|.+ .+.++++.++++|+||+. .+..+..+.+ ++++.|++++.                 ..
T Consensus       126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~  203 (584)
T 3l6x_A          126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI  203 (584)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred             HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence            9999999999999999997 678999999999999996 4567777775 57999999872                 12


Q ss_pred             cchhHHHHHHHHHHHhhcCCCC-CChhh-hhhhHHHHHHhhcC------CCHhHHHHHHHHHHHhccCCcHH--------
Q 043676          143 AKLSMLRNATRTLSNFCRGKPE-PPFDQ-VRPALPALAQLVHS------NDEDVLTYACWSLSYLADGTNDK--------  206 (446)
Q Consensus       143 ~~~~~~~~a~~~L~~l~~~~~~-~~~~~-~~~~~~~l~~ll~~------~~~~v~~~~~~~l~~l~~~~~~~--------  206 (446)
                      .++.++.+++++|.||+...+. +..+. ..|+++.|+.++++      .+....+.++++|.||+......        
T Consensus       204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~  283 (584)
T 3l6x_A          204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ  283 (584)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            3578999999999999987633 33333 36778899999874      46789999999999998652110        


Q ss_pred             -----------------HHHHHHhCcHHHHHHhcCC-CCccchhHHHHHHHHhhcCCchh----hHHHHhcCChHHHHHH
Q 043676          207 -----------------IQAVIEAGVCPRLVELLGH-PSPSVLTPALRTVGNIVTGDDFQ----TQCIINHGAVPYLLDM  264 (446)
Q Consensus       207 -----------------~~~~~~~~~~~~l~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~----~~~~~~~~~~~~l~~~  264 (446)
                                       ...+.+.++++.++.++.. .++.+++.|+++|.||+.+....    ...+.+.++++.|+.+
T Consensus       284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L  363 (584)
T 3l6x_A          284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL  363 (584)
T ss_dssp             ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred             hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence                             1112233556788888864 67889999999999999866322    2233457889999999


Q ss_pred             hccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--------CcchHHHHHHHHHHhccCCCHHHHH
Q 043676          265 LVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA--------EFDTKKEAAWAISNATSGGTQEQIK  336 (446)
Q Consensus       265 l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--------~~~v~~~a~~aL~~l~~~~~~~~~~  336 (446)
                      |.++ +..++..|+|+|+|++.+.. .. ..+..|+++.|+.+|.++        +.++...|+++|.|++.. ++++.+
T Consensus       364 L~s~-~~~v~~~A~~aL~nLs~~~~-~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~~~  439 (584)
T 3l6x_A          364 LTNE-HERVVKAASGALRNLAVDAR-NK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEAAK  439 (584)
T ss_dssp             GGCS-CHHHHHHHHHHHHHHHTTCS-CH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred             HcCC-CHHHHHHHHHHHHHHhCChh-HH-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHHHH
Confidence            9999 88999999999999987542 33 345779999999999876        357889999999999866 688999


Q ss_pred             HHHHcCChHHHHhcccCC--CHHHHHHHHHHHHHHHHhhhh
Q 043676          337 HLVREGCVKPLCDLLLCS--DPEIVTVCLIGLENILKVGEA  375 (446)
Q Consensus       337 ~l~~~~~i~~L~~ll~~~--~~~~~~~~~~~l~~l~~~~~~  375 (446)
                      .+.+.|+++.|++++.+.  .+.++..|.++|.++....+.
T Consensus       440 ~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~el  480 (584)
T 3l6x_A          440 KLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKEL  480 (584)
T ss_dssp             HHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHH
T ss_pred             HHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHH
Confidence            999999999999999886  789999999999998865443

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=3e-37  Score=288.61  Aligned_cols=369  Identities=18%  Similarity=0.189  Sum_probs=305.6

Q ss_pred             hcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ChH
Q 043676           43 QSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGD-SPR  121 (446)
Q Consensus        43 ~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~-~~~  121 (446)
                      ..+.+|.|+++|.+++ ++++..|+++|.+++..+++++..+++.|+|+.|+.+|+++++.+++.|+++|.||+.. +++
T Consensus        46 ~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~  124 (584)
T 3l6x_A           46 RQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD  124 (584)
T ss_dssp             CCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred             ccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence            4578999999999998 89999999999999988999999999999999999999999999999999999999975 688


Q ss_pred             HHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc------------------C
Q 043676          122 CRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH------------------S  183 (446)
Q Consensus       122 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~------------------~  183 (446)
                      ++..+.+.|++++|+.+|....+..+++.++++|++|+........ ...+++|.|+.++.                  .
T Consensus       125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~-I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~  203 (584)
T 3l6x_A          125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKME-IVDHALHALTDEVIIPHSGWEREPNEDCKPRHI  203 (584)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHH-HHHHTHHHHHHHTHHHHHCCC----------CC
T ss_pred             HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHH-HHhccHHHHHHHHhccccccccccccccccccc
Confidence            9999999999999999995556788999999999999986533333 33678999999871                  2


Q ss_pred             CCHhHHHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhcCC------CCccchhHHHHHHHHhhcCCc----------
Q 043676          184 NDEDVLTYACWSLSYLADGTNDKIQAVIEA-GVCPRLVELLGH------PSPSVLTPALRTVGNIVTGDD----------  246 (446)
Q Consensus       184 ~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~l~~ll~~------~~~~~~~~a~~~l~~l~~~~~----------  246 (446)
                      .++.+++.+.++|.|++...++..+.+.+. |+++.|+.++++      .+....+.|+++|.||+....          
T Consensus       204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~  283 (584)
T 3l6x_A          204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ  283 (584)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            367999999999999999887766667774 667899999864      456788999999999987521          


Q ss_pred             ---------------hhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCH---HHHH-HHHHcCChHHHHHH
Q 043676          247 ---------------FQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNR---EQIQ-AVIDAGLIRPIVNL  307 (446)
Q Consensus       247 ---------------~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~---~~~~-~~~~~~~i~~L~~l  307 (446)
                                     .....+.+.++++.++.+|.+..++.+++.|+++|.|++.+..   ...+ .+.+.++++.|+++
T Consensus       284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L  363 (584)
T 3l6x_A          284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL  363 (584)
T ss_dssp             ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred             hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence                           1112223345577889999754478999999999999987641   2223 34457889999999


Q ss_pred             HhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCC--------CHHHHHHHHHHHHHHHHhhhhhhcc
Q 043676          308 LQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCS--------DPEIVTVCLIGLENILKVGEAERNM  379 (446)
Q Consensus       308 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~--------~~~~~~~~~~~l~~l~~~~~~~~~~  379 (446)
                      +.+++..++..|+++|.|++....  .... +..|+++.|+++|.+.        +.+++..++++|.+++...+..   
T Consensus       364 L~s~~~~v~~~A~~aL~nLs~~~~--~~~~-I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~---  437 (584)
T 3l6x_A          364 LTNEHERVVKAASGALRNLAVDAR--NKEL-IGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA---  437 (584)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHTTCS--CHHH-HHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHH---
T ss_pred             HcCCCHHHHHHHHHHHHHHhCChh--HHHH-HHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHH---
Confidence            999999999999999999998643  3333 4678999999999876        4678899999999998765543   


Q ss_pred             cCCCCccchHHHHHHHhChHHHHHHhhcCC--CHHHHHHHHHHHHHhcCCCC
Q 043676          380 GTTIGDVNQYAQFVEEAGGLEKIENLQSHD--NNEIHEKSVKIFKTYWCGRN  429 (446)
Q Consensus       380 ~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~--~~~v~~~a~~~l~~~~~~~~  429 (446)
                                .+.+.+.|+++.|..|..+.  .+.+++.|.++|.+++...+
T Consensus       438 ----------~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e  479 (584)
T 3l6x_A          438 ----------AKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE  479 (584)
T ss_dssp             ----------HHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred             ----------HHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence                      57888999999999998875  88999999999999987544

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=1.7e-36  Score=291.25  Aligned_cols=403  Identities=16%  Similarity=0.155  Sum_probs=340.0

Q ss_pred             CChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhh
Q 043676            2 GSFPALVAGVWS-DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSEN   80 (446)
Q Consensus         2 ~~i~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~   80 (446)
                      |.++.|++.|.+ +++.++..++.+|.+++..  .+....+.+.|++|.|++++++++ +.++..|+++|.+++..++..
T Consensus        59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~  135 (529)
T 1jdh_A           59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  135 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred             chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcch
Confidence            468899999975 4899999999999998765  457788889999999999999999 899999999999999866778


Q ss_pred             HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676           81 TNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR  160 (446)
Q Consensus        81 ~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  160 (446)
                      +..+.+.|+++.|++++.++++.++..++.+|.+++..+++.+..+.+.|+++.++.++........+..++.+|.+++.
T Consensus       136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~  215 (529)
T 1jdh_A          136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  215 (529)
T ss_dssp             HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence            88888999999999999999999999999999999988888999999999999999999666667788889999999998


Q ss_pred             CCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHH
Q 043676          161 GKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN  240 (446)
Q Consensus       161 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~  240 (446)
                      ...........++++.++.++.++++.++..+++++.+++...+...   ...++++.|++++.++++.++..|+++|++
T Consensus       216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  292 (529)
T 1jdh_A          216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN  292 (529)
T ss_dssp             STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            66544555567999999999999999999999999999997654321   123789999999999999999999999999


Q ss_pred             hhcCCchhhHHHHhcCChHHHHHHhccC-chHHHHHHHHHHHHHHhcCCHH---HHHHHHHcCChHHHHHHHhcCC-cch
Q 043676          241 IVTGDDFQTQCIINHGAVPYLLDMLVHN-HEEIIKKEISWIISNITAGNRE---QIQAVIDAGLIRPIVNLLQNAE-FDT  315 (446)
Q Consensus       241 l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~v~~~a~~~l~~l~~~~~~---~~~~~~~~~~i~~L~~ll~~~~-~~v  315 (446)
                      ++.+++.....+.+.|+++.++.++.+. .++.++..|+++|+|++.++++   .+..+.+.|+++.|++++.+++ +.+
T Consensus       293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v  372 (529)
T 1jdh_A          293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  372 (529)
T ss_dssp             HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHH
Confidence            9998888888899999999999999763 1378999999999999875332   4567888999999999999876 599


Q ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHH----------------------HHHhh
Q 043676          316 KKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLEN----------------------ILKVG  373 (446)
Q Consensus       316 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~----------------------l~~~~  373 (446)
                      +..++++|+|++..  ++....+.+.|+++.|++++.+++++++..+.|++.+                      +....
T Consensus       373 ~~~a~~~l~nl~~~--~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~  450 (529)
T 1jdh_A          373 IKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV  450 (529)
T ss_dssp             HHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHhcC--hhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCc
Confidence            99999999999974  3445778899999999999998777777766665554                      33221


Q ss_pred             hhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 043676          374 EAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWC  426 (446)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  426 (446)
                                    ..+..+.+.|+++.|..+..+++++++..|.+.+.++..
T Consensus       451 --------------~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~  489 (529)
T 1jdh_A          451 --------------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  489 (529)
T ss_dssp             --------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             --------------hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence                          135678899999999999999999999999999998764

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=7.9e-37  Score=279.90  Aligned_cols=325  Identities=17%  Similarity=0.167  Sum_probs=276.3

Q ss_pred             CChHHHHHhhcCC------------CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCH----------HHHHHhhcCCC-
Q 043676            2 GSFPALVAGVWSD------------DNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVV----------PRFVEFLMRED-   58 (446)
Q Consensus         2 ~~i~~l~~~l~s~------------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~----------~~L~~ll~~~~-   58 (446)
                      |.+|.|+++|+..            ++.++..|+|+|.+++++. ++..+...+.+++          +.+++++.+.. 
T Consensus        70 g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  148 (458)
T 3nmz_A           70 GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP  148 (458)
T ss_dssp             TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred             CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence            7899999999963            3799999999999999987 6666776777777          66777777652 


Q ss_pred             ChH-----HHH-------HHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCC-----------CCHHHHHHHHHHHHHh
Q 043676           59 YPQ-----LQY-------EAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSS-----------PSDDVREQAVWALGNV  115 (446)
Q Consensus        59 ~~~-----~~~-------~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~-----------~~~~v~~~a~~~l~~l  115 (446)
                      ..+     ++.       +|+|+|.|++. ++++|..+++.|+++.|+.+|..           .++.+++.|+|+|.|+
T Consensus       149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nL  227 (458)
T 3nmz_A          149 GMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNL  227 (458)
T ss_dssp             SSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHH
Confidence            112     444       99999999987 69999999999999999999942           3477899999999999


Q ss_pred             hCCChHHHHHHHH-cCChHHHHHHhccccchhHHHHHHHHHHHhhcCC--CCCChhhhhhhHHHHHHhh-cCCCHhHHHH
Q 043676          116 AGDSPRCRDLVLS-QGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK--PEPPFDQVRPALPALAQLV-HSNDEDVLTY  191 (446)
Q Consensus       116 ~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~l~~ll-~~~~~~v~~~  191 (446)
                      +.+++..+..+.. .|+++.|+.+| .+.+++++..++|+|.+|+...  ..+......|++|.|+.+| ++.++.+++.
T Consensus       228 a~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~  306 (458)
T 3nmz_A          228 TFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKS  306 (458)
T ss_dssp             HTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHH
T ss_pred             hCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHH
Confidence            9888777766654 45599999999 6789999999999999999852  2334455679999999975 5678999999


Q ss_pred             HHHHHHHhccCCcHHHHHHH-HhCcHHHHHHhcCCCCcc----chhHHHHHHHHhhc---CCchhhHHHHhcCChHHHHH
Q 043676          192 ACWSLSYLADGTNDKIQAVI-EAGVCPRLVELLGHPSPS----VLTPALRTVGNIVT---GDDFQTQCIINHGAVPYLLD  263 (446)
Q Consensus       192 ~~~~l~~l~~~~~~~~~~~~-~~~~~~~l~~ll~~~~~~----~~~~a~~~l~~l~~---~~~~~~~~~~~~~~~~~l~~  263 (446)
                      ++.+|++++...++....+. ..|+++.|+.+|.+.+..    ++..|+++|.|++.   .++..+..+.+.|+++.|+.
T Consensus       307 A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~  386 (458)
T 3nmz_A          307 VLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQ  386 (458)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHH
Confidence            99999999985544444455 689999999999986653    89999999999997   68888888999999999999


Q ss_pred             HhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCC
Q 043676          264 MLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGG  330 (446)
Q Consensus       264 ~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  330 (446)
                      +|.++ +..++++|+|+|+|++.++++++..+++.|+++.|+++++++++.+++.|+++|.|++...
T Consensus       387 LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          387 HLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             HHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            99998 8899999999999999888999999999999999999999999999999999999999763

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.4e-35  Score=290.07  Aligned_cols=403  Identities=17%  Similarity=0.160  Sum_probs=345.4

Q ss_pred             CChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhh
Q 043676            2 GSFPALVAGVWSD-DNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSEN   80 (446)
Q Consensus         2 ~~i~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~   80 (446)
                      |.++.|++.|.++ ++.++..|+.+|.+++..  .+....+.+.|+++.|++++++++ +.++..|+++|.+++...+..
T Consensus        56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~  132 (644)
T 2z6h_A           56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  132 (644)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTH
T ss_pred             ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchh
Confidence            3588999999865 899999999999987765  457778889999999999999998 899999999999999866778


Q ss_pred             HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676           81 TNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR  160 (446)
Q Consensus        81 ~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  160 (446)
                      +..+.+.|+++.|+++|+++++.++..++.+|.+++..+++.+..+.+.|+++.|+.++........+..++.+|.+++.
T Consensus       133 ~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~  212 (644)
T 2z6h_A          133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  212 (644)
T ss_dssp             HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence            88888999999999999999999999999999999988888899999999999999999666667888999999999998


Q ss_pred             CCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHH
Q 043676          161 GKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN  240 (446)
Q Consensus       161 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~  240 (446)
                      ....+......++++.++.++.+.+..++..++++|.+++...+...   ...++++.|+.++.+.++.++..|+++|++
T Consensus       213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~---~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~  289 (644)
T 2z6h_A          213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN  289 (644)
T ss_dssp             CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCC---SCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhh---hhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            76555555667899999999999999999999999999997644311   112789999999999999999999999999


Q ss_pred             hhcCCchhhHHHHhcCChHHHHHHhccCch-HHHHHHHHHHHHHHhcCCH---HHHHHHHHcCChHHHHHHHhcCC-cch
Q 043676          241 IVTGDDFQTQCIINHGAVPYLLDMLVHNHE-EIIKKEISWIISNITAGNR---EQIQAVIDAGLIRPIVNLLQNAE-FDT  315 (446)
Q Consensus       241 l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~v~~~a~~~l~~l~~~~~---~~~~~~~~~~~i~~L~~ll~~~~-~~v  315 (446)
                      |+..++..+..+.+.|+++.|+.++.+..+ ..++..|+++|+|++..++   .....+.+.|+++.|++++.+.+ +.+
T Consensus       290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v  369 (644)
T 2z6h_A          290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  369 (644)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHH
T ss_pred             HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHH
Confidence            999888888888999999999999987423 7999999999999987432   23344778899999999999875 699


Q ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCC----------------------HHHHHHHHHHHHHHHHhh
Q 043676          316 KKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSD----------------------PEIVTVCLIGLENILKVG  373 (446)
Q Consensus       316 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~----------------------~~~~~~~~~~l~~l~~~~  373 (446)
                      ++.|+++|+|++..  ++....+.+.|+++.|++++.+.+                      .+++..++.+|.+++...
T Consensus       370 ~~~a~~~L~nLa~~--~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~  447 (644)
T 2z6h_A          370 IKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV  447 (644)
T ss_dssp             HHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHccC--HHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCH
Confidence            99999999999875  344577889999999999997643                      456667778888777544


Q ss_pred             hhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 043676          374 EAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWC  426 (446)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  426 (446)
                      .              .+..+.+.|+++.|..++.+++++++..|.+++.++..
T Consensus       448 ~--------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~  486 (644)
T 2z6h_A          448 H--------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  486 (644)
T ss_dssp             H--------------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             H--------------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            2              25778899999999999999999999999999888764

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=7.6e-35  Score=288.88  Aligned_cols=403  Identities=17%  Similarity=0.166  Sum_probs=342.9

Q ss_pred             CChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhh
Q 043676            2 GSFPALVAGVWSD-DNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSEN   80 (446)
Q Consensus         2 ~~i~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~   80 (446)
                      +.++.|++.|.++ ++.++..|+.+|.+++..  ......+.+.|+++.|+++|++++ +.++..|+++|.+++...++.
T Consensus       192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~  268 (780)
T 2z6g_A          192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGA  268 (780)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTH
T ss_pred             ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence            3578899999854 899999999999997775  455777888999999999999998 899999999999999876788


Q ss_pred             HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676           81 TNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR  160 (446)
Q Consensus        81 ~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  160 (446)
                      +..+.+.|+++.|+.+|.+++..++..++.+|.+++..+++.+..+.+.|+++.++.++........+..++.+|.+++.
T Consensus       269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~  348 (780)
T 2z6g_A          269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  348 (780)
T ss_dssp             HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence            88888999999999999999999999999999999988888899999999999999999655566677889999999997


Q ss_pred             CCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHH
Q 043676          161 GKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN  240 (446)
Q Consensus       161 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~  240 (446)
                      ...........++++.|+.++.+.+..++..+++++.+++.......   ...++++.|+.++.+.++.++..|+++|++
T Consensus       349 ~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~---~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~  425 (780)
T 2z6g_A          349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN  425 (780)
T ss_dssp             STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhh---hhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            65444555567899999999999999999999999999997654311   113688999999999999999999999999


Q ss_pred             hhcCCchhhHHHHhcCChHHHHHHhccCch-HHHHHHHHHHHHHHhcCCHH---HHHHHHHcCChHHHHHHHhcCCc-ch
Q 043676          241 IVTGDDFQTQCIINHGAVPYLLDMLVHNHE-EIIKKEISWIISNITAGNRE---QIQAVIDAGLIRPIVNLLQNAEF-DT  315 (446)
Q Consensus       241 l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~v~~~a~~~l~~l~~~~~~---~~~~~~~~~~i~~L~~ll~~~~~-~v  315 (446)
                      |+.+++..+..+.+.++++.|+.++.+..+ ..++..|+++|+|++..+++   .+..+.+.++++.|++++.+.+. .+
T Consensus       426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v  505 (780)
T 2z6g_A          426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  505 (780)
T ss_dssp             HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred             HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHH
Confidence            999888888888899999999999986413 48999999999999874332   24567788999999999998875 99


Q ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCC----------------------HHHHHHHHHHHHHHHHhh
Q 043676          316 KKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSD----------------------PEIVTVCLIGLENILKVG  373 (446)
Q Consensus       316 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~----------------------~~~~~~~~~~l~~l~~~~  373 (446)
                      +..|+++|+|++.  .+.....+.+.|+++.|++++.+.+                      ++++..++.+|.++....
T Consensus       506 ~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~  583 (780)
T 2z6g_A          506 IKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI  583 (780)
T ss_dssp             HHHHHHHHHHHHS--SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcCh
Confidence            9999999999997  4556678888999999999997644                      346667778888776432


Q ss_pred             hhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 043676          374 EAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWC  426 (446)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  426 (446)
                       .             .+..+.+.|+++.|..++.+++++++..|..+|.++..
T Consensus       584 -~-------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~  622 (780)
T 2z6g_A          584 -H-------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  622 (780)
T ss_dssp             -H-------------HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred             -h-------------hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence             2             25778899999999999999999999999999888753

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=1.8e-31  Score=237.64  Aligned_cols=269  Identities=18%  Similarity=0.169  Sum_probs=234.8

Q ss_pred             hHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCChHHHHHHHH
Q 043676           60 PQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSS-----------PSDDVREQAVWALGNVAGDSPRCRDLVLS  128 (446)
Q Consensus        60 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~-----------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~  128 (446)
                      ...+..|+++|.|++. ++++|..+++.|+++.|+.+|..           .++.+++.|+|+|.|++..++..+..+..
T Consensus        46 ~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~  124 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS  124 (354)
T ss_dssp             GGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3556689999999998 68999999999999999999942           24789999999999999888777777755


Q ss_pred             c-CChHHHHHHhccccchhHHHHHHHHHHHhhcCC--CCCChhhhhhhHHHHHHhh-cCCCHhHHHHHHHHHHHhccCCc
Q 043676          129 Q-GALIPLLAELNEHAKLSMLRNATRTLSNFCRGK--PEPPFDQVRPALPALAQLV-HSNDEDVLTYACWSLSYLADGTN  204 (446)
Q Consensus       129 ~-~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~l~~ll-~~~~~~v~~~~~~~l~~l~~~~~  204 (446)
                      . |+++.|+.+| .+.+++++..++|+|.+|+...  ..+......|++|.|+.+| ++.++++++.++.+|++++...+
T Consensus       125 ~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~  203 (354)
T 3nmw_A          125 MKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT  203 (354)
T ss_dssp             CHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             cCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence            4 5599999999 6788999999999999999852  2344455679999999975 66789999999999999998665


Q ss_pred             HHHHHHH-HhCcHHHHHHhcCCCCc----cchhHHHHHHHHhhc---CCchhhHHHHhcCChHHHHHHhccCchHHHHHH
Q 043676          205 DKIQAVI-EAGVCPRLVELLGHPSP----SVLTPALRTVGNIVT---GDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKE  276 (446)
Q Consensus       205 ~~~~~~~-~~~~~~~l~~ll~~~~~----~~~~~a~~~l~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~  276 (446)
                      +....+. ..|+++.|+.++.++++    .++..|+++|.|++.   .+++.+..+.+.|+++.|+.+|.++ +..+++.
T Consensus       204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~  282 (354)
T 3nmw_A          204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSN  282 (354)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHH
T ss_pred             hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHH
Confidence            5555565 68999999999998655    389999999999997   6888888899999999999999998 8899999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCC
Q 043676          277 ISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGT  331 (446)
Q Consensus       277 a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  331 (446)
                      |+|+|+|++.++++++..+.+.|+++.|+++++++++.+++.|+++|.+++....
T Consensus       283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~  337 (354)
T 3nmw_A          283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  337 (354)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence            9999999988889999999999999999999999999999999999999998743

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.98  E-value=1.1e-30  Score=232.70  Aligned_cols=275  Identities=19%  Similarity=0.197  Sum_probs=237.7

Q ss_pred             CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcc----------ccchhHHHHHHHHHHHhhcCCC-CCChh
Q 043676          100 PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE----------HAKLSMLRNATRTLSNFCRGKP-EPPFD  168 (446)
Q Consensus       100 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~----------~~~~~~~~~a~~~L~~l~~~~~-~~~~~  168 (446)
                      +....+..|+|+|.|++.+ +++|+.+.+.|++++|+.+|..          ..++.+++.++|+|.+++.+.+ .+...
T Consensus        44 ~~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i  122 (354)
T 3nmw_A           44 PVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL  122 (354)
T ss_dssp             GGGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4456677899999999966 7899999999999999999942          1346799999999999998863 33333


Q ss_pred             h-hhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccC-CcHHHHHHHHhCcHHHHHHhc-CCCCccchhHHHHHHHHhhcCC
Q 043676          169 Q-VRPALPALAQLVHSNDEDVLTYACWSLSYLADG-TNDKIQAVIEAGVCPRLVELL-GHPSPSVLTPALRTVGNIVTGD  245 (446)
Q Consensus       169 ~-~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~l~~ll-~~~~~~~~~~a~~~l~~l~~~~  245 (446)
                      . ..|++|.|+.+|+++++++++.++++|.+++.. ++.....+.+.|+++.|+++| ++.+..+++.|+.+|+||+.++
T Consensus       123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~  202 (354)
T 3nmw_A          123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC  202 (354)
T ss_dssp             HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence            2 356799999999999999999999999999985 455667788999999999974 5678889999999999999977


Q ss_pred             chhhHHHH-hcCChHHHHHHhccCchH---HHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCCcchHHH
Q 043676          246 DFQTQCII-NHGAVPYLLDMLVHNHEE---IIKKEISWIISNITA---GNREQIQAVIDAGLIRPIVNLLQNAEFDTKKE  318 (446)
Q Consensus       246 ~~~~~~~~-~~~~~~~l~~~l~~~~~~---~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~  318 (446)
                      +.....+. ..|+++.|+.+|.++.+.   .+++.|+++|.|++.   ++++.+..+.+.|+++.|+.++++++..+++.
T Consensus       203 ~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~  282 (354)
T 3nmw_A          203 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN  282 (354)
T ss_dssp             HHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHH
T ss_pred             hhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHH
Confidence            66666666 789999999999876232   599999999999986   68889999999999999999999999999999


Q ss_pred             HHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhh
Q 043676          319 AAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAE  376 (446)
Q Consensus       319 a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~  376 (446)
                      |+++|.|++.. +++++..+.+.|+++.|++++.++++.++..++++|.+++...+..
T Consensus       283 A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~  339 (354)
T 3nmw_A          283 ACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK  339 (354)
T ss_dssp             HHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred             HHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            99999999864 6888999999999999999999999999999999999999875543

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.96  E-value=3.4e-28  Score=210.14  Aligned_cols=244  Identities=29%  Similarity=0.377  Sum_probs=224.4

Q ss_pred             CCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhh
Q 043676            1 LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSEN   80 (446)
Q Consensus         1 ~~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~   80 (446)
                      +|.+|.|++.|+++++.++..|+++|.+++... .+....+.+.|+++.|++++++++ +.++..|+++|++++..+++.
T Consensus         1 ~~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~   78 (252)
T 4hxt_A            1 MNDVEKLVKLLTSTDSETQKEAARDLAEIASGP-ASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEA   78 (252)
T ss_dssp             CCHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHH
T ss_pred             CCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCChHH
Confidence            578999999999999999999999999998875 457788889999999999999999 999999999999999977999


Q ss_pred             HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676           81 TNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR  160 (446)
Q Consensus        81 ~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  160 (446)
                      +..+.+.|+++.++.+++++++.++..++++|++++...+..+..+.+.|+++.++.++ .+.++.++..++++|.+++.
T Consensus        79 ~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~  157 (252)
T 4hxt_A           79 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIAS  157 (252)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999988888899999999999999999 67889999999999999998


Q ss_pred             CCCC-CChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHH
Q 043676          161 GKPE-PPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVG  239 (446)
Q Consensus       161 ~~~~-~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~  239 (446)
                      ..+. .......++++.++.++.++++.++..++++|++++...+.....+.+.|+++.|+.++.++++.++..|+++|+
T Consensus       158 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~  237 (252)
T 4hxt_A          158 GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALE  237 (252)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            7532 234455799999999999999999999999999999988888888999999999999999999999999999999


Q ss_pred             HhhcCCch
Q 043676          240 NIVTGDDF  247 (446)
Q Consensus       240 ~l~~~~~~  247 (446)
                      +++...+.
T Consensus       238 ~l~~~~~~  245 (252)
T 4hxt_A          238 NIKSGGWL  245 (252)
T ss_dssp             HHHHTCBC
T ss_pred             HHHcCCCc
Confidence            99976543

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.96  E-value=7.8e-28  Score=207.86  Aligned_cols=240  Identities=28%  Similarity=0.422  Sum_probs=222.5

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHH
Q 043676           45 GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD  124 (446)
Q Consensus        45 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~  124 (446)
                      +.++.|+++|.+++ ++++..|+++|.+++..+++.+..+.+.|+++.|+++++++++.++..++++|++++...+..+.
T Consensus         2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            56899999999999 99999999999999997888999999999999999999999999999999999999988888999


Q ss_pred             HHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCC
Q 043676          125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGT  203 (446)
Q Consensus       125 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~  203 (446)
                      .+.+.|+++.++.++ .++++.++..++++|.+++... .........++++.++.++.++++.++..++++|++++...
T Consensus        81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  159 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP  159 (252)
T ss_dssp             HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999 6788999999999999999654 33444455789999999999999999999999999999988


Q ss_pred             cHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHH
Q 043676          204 NDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISN  283 (446)
Q Consensus       204 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~  283 (446)
                      +.....+.+.|+++.|+.++.++++.++..|+++|++++.+++.....+.+.|+++.++.++.++ ++.++..|+++|+|
T Consensus       160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~  238 (252)
T 4hxt_A          160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN  238 (252)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence            88878899999999999999999999999999999999998888888899999999999999998 89999999999999


Q ss_pred             HhcC
Q 043676          284 ITAG  287 (446)
Q Consensus       284 l~~~  287 (446)
                      ++..
T Consensus       239 l~~~  242 (252)
T 4hxt_A          239 IKSG  242 (252)
T ss_dssp             HHHT
T ss_pred             HHcC
Confidence            9864

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.96  E-value=4.8e-28  Score=209.07  Aligned_cols=239  Identities=36%  Similarity=0.516  Sum_probs=217.3

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhH
Q 043676            2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENT   81 (446)
Q Consensus         2 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~   81 (446)
                      ..++.+++.|+++|+.++..|++.|+++++.. .+....+.+.|+++.|+++|++++ +.++..|+++|++++.++++.+
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~   89 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQI   89 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHH
Confidence            35789999999999999999999998887763 667788999999999999999999 9999999999999999889999


Q ss_pred             HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676           82 NVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG  161 (446)
Q Consensus        82 ~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  161 (446)
                      ..+.+.|+++.|+.+|+++++.++..|+++|+|++...+.....+.+.|+++.++.++ .+.++.++..++++|.+++..
T Consensus        90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~  168 (252)
T 4db8_A           90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASG  168 (252)
T ss_dssp             HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999987776548888999999999999 677899999999999999987


Q ss_pred             CC-CCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHH
Q 043676          162 KP-EPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN  240 (446)
Q Consensus       162 ~~-~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~  240 (446)
                      .+ ........++++.|+.++.++++.++..++++|++++...+.....+.+.|+++.|+.++.++++.++..|+++|++
T Consensus       169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~  248 (252)
T 4db8_A          169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK  248 (252)
T ss_dssp             CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred             ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            52 22333457999999999999999999999999999998888888889999999999999999999999999999999


Q ss_pred             hhc
Q 043676          241 IVT  243 (446)
Q Consensus       241 l~~  243 (446)
                      ++.
T Consensus       249 l~~  251 (252)
T 4db8_A          249 LQS  251 (252)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            975

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.96  E-value=5.7e-28  Score=208.57  Aligned_cols=239  Identities=36%  Similarity=0.521  Sum_probs=220.6

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHH
Q 043676           45 GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD  124 (446)
Q Consensus        45 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~  124 (446)
                      ...+.+.+.|++++ ++++..|+++|.++...+++.+..+++.|+++.|+++|+++++.++..++++|++++...+..+.
T Consensus        12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            46899999999999 89999999999887765778888999999999999999999999999999999999988888999


Q ss_pred             HHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC-ChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCC
Q 043676          125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEP-PFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGT  203 (446)
Q Consensus       125 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~  203 (446)
                      .+.+.|+++.++.++ .++++.++..++++|.+++.+.+.. ......+++|.++.++.++++.++..++++|++++...
T Consensus        91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  169 (252)
T 4db8_A           91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG  169 (252)
T ss_dssp             HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999 6688999999999999999887544 45566799999999999999999999999999999988


Q ss_pred             cHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHH
Q 043676          204 NDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISN  283 (446)
Q Consensus       204 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~  283 (446)
                      +.....+.+.|+++.|+.++.++++.++..|+++|++++..++.....+.+.|+++.++.++.++ ++.++..|+++|+|
T Consensus       170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~  248 (252)
T 4db8_A          170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK  248 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred             hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            88888888999999999999999999999999999999988888888899999999999999998 89999999999999


Q ss_pred             Hhc
Q 043676          284 ITA  286 (446)
Q Consensus       284 l~~  286 (446)
                      ++.
T Consensus       249 l~~  251 (252)
T 4db8_A          249 LQS  251 (252)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            964

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.8e-25  Score=211.96  Aligned_cols=397  Identities=15%  Similarity=0.134  Sum_probs=296.6

Q ss_pred             hHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676            4 FPALVAGVWSD-DNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN   82 (446)
Q Consensus         4 i~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~   82 (446)
                      .+.+.+.+++. +..+....++.|. .++.  ...++..+..+.++.|.+.+++   ..++..|+-+|+.+.........
T Consensus       257 ~~~l~~~~~~~~~~~~~~a~L~lLs-aACi--~~~cR~~I~~~~~~~L~~~l~~---~~ir~lAavvL~KL~~~~~~~~~  330 (778)
T 3opb_A          257 SKLFKKRVFEEQDLQFTKELLRLLS-SACI--DETMRTYITENYLQLLERSLNV---EDVQIYSALVLVKTWSFTKLTCI  330 (778)
T ss_dssp             HHHHHHHHHSSCCHHHHHHHHHHHH-HHCC--SHHHHHHHHHHHHHHHHHHTTS---GGGHHHHHHHHHHHTGGGTCTTC
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHH-HHhC--CcHHHHHHHHhHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCCCcC
Confidence            45666677554 4555555555554 5665  4555666677889999999965   47899999999998863222111


Q ss_pred             HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHH-cCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676           83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLS-QGALIPLLAELNEHAKLSMLRNATRTLSNFCRG  161 (446)
Q Consensus        83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  161 (446)
                      .+.  ...+.+.++|.+++.+-+..|++.|..++.+.. .++.+.+ .+++..|+.++....+..+...++.+|.|++..
T Consensus       331 si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~-VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~  407 (778)
T 3opb_A          331 NLK--QLSEIFINAISRRIVPKVEMSVEALAYLSLKAS-VKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTL  407 (778)
T ss_dssp             CHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSH-HHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCC
T ss_pred             cHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHH-HHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Confidence            111  245677788888777779999999999996554 5555554 455999999995456788999999999999986


Q ss_pred             CCCC---------------------------------------ChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccC
Q 043676          162 KPEP---------------------------------------PFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADG  202 (446)
Q Consensus       162 ~~~~---------------------------------------~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~  202 (446)
                      .+..                                       ......|++|.|+.++.++++.+++.++++|.+++..
T Consensus       408 ~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d  487 (778)
T 3opb_A          408 PEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS  487 (778)
T ss_dssp             CCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS
T ss_pred             CcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence            5321                                       0112268899999999999999999999999999976


Q ss_pred             CcHHHHHHHHhCcHHHHHHhcCCCCcc---chhHHHHHHHHhhcCCchhhHHHHh----cCChHHHHHHhcc-CchH---
Q 043676          203 TNDKIQAVIEAGVCPRLVELLGHPSPS---VLTPALRTVGNIVTGDDFQTQCIIN----HGAVPYLLDMLVH-NHEE---  271 (446)
Q Consensus       203 ~~~~~~~~~~~~~~~~l~~ll~~~~~~---~~~~a~~~l~~l~~~~~~~~~~~~~----~~~~~~l~~~l~~-~~~~---  271 (446)
                       +.....+++.|+++.|+.++.+....   .+..|+.+|++++.......  ++.    .+++++|+.+|.. +...   
T Consensus       488 -~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~  564 (778)
T 3opb_A          488 -KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNP  564 (778)
T ss_dssp             -GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC
T ss_pred             -HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHHHcCCCCCccccc
Confidence             44566688999999999999987544   78999999999985443221  121    3789999999983 2111   


Q ss_pred             ---------HHHHHHHHHHHHHhcCC----HHHHHHHHHc-CChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHH-H
Q 043676          272 ---------IIKKEISWIISNITAGN----REQIQAVIDA-GLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQI-K  336 (446)
Q Consensus       272 ---------~v~~~a~~~l~~l~~~~----~~~~~~~~~~-~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~-~  336 (446)
                               .-+.+|+.+|+|++..+    ++.+..+++. |+++.|.+++.+++..+++.|+++++|++..  ++.+ .
T Consensus       565 l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~--~e~i~~  642 (778)
T 3opb_A          565 LHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSH--PLTIAA  642 (778)
T ss_dssp             ---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS--GGGTGG
T ss_pred             ccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC--cHHHHH
Confidence                     22779999999999864    3456778874 9999999999999999999999999999973  4432 2


Q ss_pred             HHHHc------CChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcC--
Q 043676          337 HLVRE------GCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSH--  408 (446)
Q Consensus       337 ~l~~~------~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~--  408 (446)
                      .+...      +.++.|+.+++.+|.+++..|.++|.++....+...            ...+...++++.+..+..+  
T Consensus       643 k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia------------~~ll~~~~gi~~Ll~lL~~~~  710 (778)
T 3opb_A          643 KFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIA------------KELLTKKELIENAIQVFADQI  710 (778)
T ss_dssp             GTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHH------------HHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHH------------HHHHHccccHHHHHHHHhccC
Confidence            32221      137889999999999999999999999865444421            3444445899998888777  


Q ss_pred             CCHHHHHHHHHHHHHhcC
Q 043676          409 DNNEIHEKSVKIFKTYWC  426 (446)
Q Consensus       409 ~~~~v~~~a~~~l~~~~~  426 (446)
                      ++++++.++..++.++++
T Consensus       711 ~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          711 DDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             TCHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            899999999999999986

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.95  E-value=5.1e-26  Score=197.11  Aligned_cols=237  Identities=15%  Similarity=0.134  Sum_probs=197.7

Q ss_pred             HhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHH-hcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHH
Q 043676          186 EDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVE-LLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDM  264 (446)
Q Consensus       186 ~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~-ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~  264 (446)
                      .+-+..++..|.+++...+ ....+.+.|+++.++. +|.++++.++..|+++|++++..++..++.+++.|+++.|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            4567888999999998654 5556888999999999 9999999999999999999999999999999999999999999


Q ss_pred             hccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCCh
Q 043676          265 LVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCV  344 (446)
Q Consensus       265 l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i  344 (446)
                      |+++.+..++..|+|+|+|++.+++...+.+.+.|+++.|+.+++++++.++..|+|+|++++.. +++.+..+.+.|++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i  211 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMV  211 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCH
Confidence            98643788999999999999998888888899999999999999999999999999999999876 56788899999999


Q ss_pred             HHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCC-CHHHHHHHHHHHHH
Q 043676          345 KPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHD-NNEIHEKSVKIFKT  423 (446)
Q Consensus       345 ~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~  423 (446)
                      +.|+.+|.+++++++..++.+|.+++...+.......  ...+.+...+.+     .++.++.++ +.++++++..++++
T Consensus       212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~--~~~~~l~~lL~~-----~~~~lq~~e~~~e~~~~~~~il~~  284 (296)
T 1xqr_A          212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR--EPELGLEELLRH-----RCQLLQQHEEYQEELEFCEKLLQT  284 (296)
T ss_dssp             HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHH--CGGGCHHHHHHH-----HHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHh--ccHHHHHHHHHH-----HHHHccchHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999987543321000  001224445543     266777666 78999999999999


Q ss_pred             hcCCCCCc
Q 043676          424 YWCGRNEE  431 (446)
Q Consensus       424 ~~~~~~~~  431 (446)
                      ||..++++
T Consensus       285 ~f~~~~~~  292 (296)
T 1xqr_A          285 CFSSPADD  292 (296)
T ss_dssp             HCC-----
T ss_pred             HcCCCCCc
Confidence            99876554

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.93  E-value=7.3e-25  Score=207.83  Aligned_cols=358  Identities=14%  Similarity=0.126  Sum_probs=281.9

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV   83 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   83 (446)
                      ++-|.+.+++  ..++..|+-.|+++........ ..+.  ...+.+.+.+.+++ .+.+..|++.|.-++. +++.+..
T Consensus       298 ~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~-~si~--~La~~~~~~L~~~~-~~~~~~AvEgLaYLSl-~~~VKe~  370 (778)
T 3opb_A          298 LQLLERSLNV--EDVQIYSALVLVKTWSFTKLTC-INLK--QLSEIFINAISRRI-VPKVEMSVEALAYLSL-KASVKIM  370 (778)
T ss_dssp             HHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTT-CCHH--HHHHHHHHHTTTCC-HHHHHHHHHHHHHHTT-SSHHHHH
T ss_pred             HHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCc-CcHH--HHHHHHHHHHhcCC-ccHHHHHHHHHHHHhC-CHHHHHH
Confidence            4556666765  4788899999999876542211 1111  26777888888877 5679999999999998 7888888


Q ss_pred             HHhc-CChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChH--------------------------------------HH
Q 043676           84 VIDH-GAVPIFVKLLSS-PSDDVREQAVWALGNVAGDSPR--------------------------------------CR  123 (446)
Q Consensus        84 ~~~~-~~i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~--------------------------------------~~  123 (446)
                      +.+. ++++.|++++++ .+..+...++.++.|++...+.                                      .+
T Consensus       371 L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~  450 (778)
T 3opb_A          371 IRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNE  450 (778)
T ss_dssp             HHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHH
Confidence            8865 669999999995 7788999999999999963321                                      34


Q ss_pred             HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHh---HHHHHHHHHHHhc
Q 043676          124 DLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDED---VLTYACWSLSYLA  200 (446)
Q Consensus       124 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~---v~~~~~~~l~~l~  200 (446)
                      ..+.+.|+++.|+.++ .+.++.++..++|+|.+++.+...+......|+++.|+.++.+....   .+..|+.+|.++.
T Consensus       451 ~~l~eaGvIp~Lv~Ll-~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLl  529 (778)
T 3opb_A          451 KYILRTELISFLKREM-HNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRML  529 (778)
T ss_dssp             HHTTTTTHHHHHHHHG-GGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHH
T ss_pred             HHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHH
Confidence            5667889999999999 77899999999999999998877777777789999999999987544   8999999999998


Q ss_pred             cCCcHHHHHHHH---hCcHHHHHHhcCC-CCcc-------------chhHHHHHHHHhhcCCc----hhhHHHHhc-CCh
Q 043676          201 DGTNDKIQAVIE---AGVCPRLVELLGH-PSPS-------------VLTPALRTVGNIVTGDD----FQTQCIINH-GAV  258 (446)
Q Consensus       201 ~~~~~~~~~~~~---~~~~~~l~~ll~~-~~~~-------------~~~~a~~~l~~l~~~~~----~~~~~~~~~-~~~  258 (446)
                      ........ +-.   .|+++.|+.+|.. +...             -+..|+.+|.||+..++    +.+..+++. |++
T Consensus       530 is~np~~~-f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~  608 (778)
T 3opb_A          530 IFTNPGLI-FKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYW  608 (778)
T ss_dssp             HTSCHHHH-SSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHH
T ss_pred             hcCCHHHH-cCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHH
Confidence            55443321 111   3889999999983 2211             16689999999999762    345667775 899


Q ss_pred             HHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHH-HHHHHc------CChHHHHHHHhcCCcchHHHHHHHHHHhccCCC
Q 043676          259 PYLLDMLVHNHEEIIKKEISWIISNITAGNREQI-QAVIDA------GLIRPIVNLLQNAEFDTKKEAAWAISNATSGGT  331 (446)
Q Consensus       259 ~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~-~~~~~~------~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  331 (446)
                      +.+..++.++ +..+|..|+++++|++.. ++.+ +.+.+.      +.++.|+.+++.++.++|..|+++|.+++.. .
T Consensus       609 ~~L~~LL~s~-n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~-~  685 (778)
T 3opb_A          609 STIENLMLDE-NVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT-I  685 (778)
T ss_dssp             HHHHHGGGCS-SHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH-C
T ss_pred             HHHHHHHhCC-CHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC-C
Confidence            9999999988 889999999999999864 4443 233321      2378999999999999999999999999644 4


Q ss_pred             HHHHHHHHHc-CChHHHHhcccC--CCHHHHHHHHHHHHHHHHhh
Q 043676          332 QEQIKHLVRE-GCVKPLCDLLLC--SDPEIVTVCLIGLENILKVG  373 (446)
Q Consensus       332 ~~~~~~l~~~-~~i~~L~~ll~~--~~~~~~~~~~~~l~~l~~~~  373 (446)
                      +..+..+.+. ++++.+++++++  ++++++.+++-++.+++...
T Consensus       686 ~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~  730 (778)
T 3opb_A          686 PLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI  730 (778)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence            6667777776 789999999998  89999999999999999754

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.93  E-value=5.9e-24  Score=177.91  Aligned_cols=199  Identities=38%  Similarity=0.560  Sum_probs=185.4

Q ss_pred             hhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhh
Q 043676          170 VRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQT  249 (446)
Q Consensus       170 ~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~  249 (446)
                      ..+..+.+..+++++++.++..++++|.+++..++.....+.+.|+++.|+.+|.++++.++..|+++|++++.+++...
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   89 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI   89 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence            35778999999999999999999999999998888888889999999999999999999999999999999998888888


Q ss_pred             HHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccC
Q 043676          250 QCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSG  329 (446)
Q Consensus       250 ~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  329 (446)
                      ..+++.|+++.++.++.++ ++.++..|+|+|+|++.++++....+.+.|+++.|+++++++++.++..|+++|.+++..
T Consensus        90 ~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  168 (210)
T 4db6_A           90 QAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG  168 (210)
T ss_dssp             HHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            8899999999999999999 999999999999999988888888899999999999999999999999999999999985


Q ss_pred             CCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHH
Q 043676          330 GTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENIL  370 (446)
Q Consensus       330 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~  370 (446)
                       +++....+.+.|+++.|.+++.+++++++..++++|.++.
T Consensus       169 -~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  208 (210)
T 4db6_A          169 -GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  208 (210)
T ss_dssp             -CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred             -CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence             5778888899999999999999999999999999999875

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.92  E-value=1.2e-23  Score=176.09  Aligned_cols=199  Identities=35%  Similarity=0.479  Sum_probs=181.7

Q ss_pred             hcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHH
Q 043676           43 QSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRC  122 (446)
Q Consensus        43 ~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~  122 (446)
                      ..+..+.|..++++++ ++++..|+++|.+++..+++.+..+.+.|+++.|+++|.++++.++..|+++|+|++...+..
T Consensus        10 ~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A           10 HGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ---CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             ccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence            3478999999999999 899999999999999878999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC-CCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhcc
Q 043676          123 RDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKP-EPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLAD  201 (446)
Q Consensus       123 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~  201 (446)
                      +..+.+.|+++.++.++ ++.++.++..++++|.+++...+ ........++++.|+.+++++++.++..++++|.+++.
T Consensus        89 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  167 (210)
T 4db6_A           89 IQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS  167 (210)
T ss_dssp             HHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            99999999999999999 77789999999999999998652 22334457899999999999999999999999999999


Q ss_pred             CCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 043676          202 GTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVT  243 (446)
Q Consensus       202 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~  243 (446)
                      ..+.....+.+.|+++.|+.++.++++.++..|+++|.+++.
T Consensus       168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            878888889999999999999999999999999999999985

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.90  E-value=2.3e-22  Score=174.20  Aligned_cols=225  Identities=15%  Similarity=0.123  Sum_probs=184.9

Q ss_pred             hHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHH
Q 043676           60 PQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVK-LLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAE  138 (446)
Q Consensus        60 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~  138 (446)
                      .+-+..|+..|.+++. +.++...+.+.|+++.|+. +|.++++.+++.|+|+|++++.+++.+++.+.+.|++++|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            3578889999999998 7778888999999999999 9999999999999999999999999999999999999999999


Q ss_pred             hccccchhHHHHHHHHHHHhhcCCCC-CChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHH
Q 043676          139 LNEHAKLSMLRNATRTLSNFCRGKPE-PPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCP  217 (446)
Q Consensus       139 l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  217 (446)
                      |..+++..+++.++|+|++++.+.+. .......+++|.|+.++++++..++..++++|.+++...++....+++.|+++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~  212 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  212 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence            95456889999999999999987632 33344578999999999999999999999999999988888888899999999


Q ss_pred             HHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhc--CC---hHHHHHHhccC-chHHHHHHHHHHHHHHh
Q 043676          218 RLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINH--GA---VPYLLDMLVHN-HEEIIKKEISWIISNIT  285 (446)
Q Consensus       218 ~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~--~~---~~~l~~~l~~~-~~~~v~~~a~~~l~~l~  285 (446)
                      .|+.+|.+++..++..|+.+|++++...+.........  .+   +..-.+-++.. ...++.+.+..++.++.
T Consensus       213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f  286 (296)
T 1xqr_A          213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF  286 (296)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999998755433322211  11   11223334422 13455566666666664

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.88  E-value=6e-22  Score=163.85  Aligned_cols=197  Identities=18%  Similarity=0.154  Sum_probs=170.7

Q ss_pred             CHHHHHHhhcCCCCh--HHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHH
Q 043676           46 VVPRFVEFLMREDYP--QLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCR  123 (446)
Q Consensus        46 ~~~~L~~ll~~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~  123 (446)
                      .+|.++++|.+++ +  +++..|++.+.+++..+++.+..+.+.|+++.|+++|+++++++++.|+|+|.||+.++++++
T Consensus         9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            5899999999998 6  899999999999998789999999999999999999999999999999999999998888899


Q ss_pred             HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc----------------CCCHh
Q 043676          124 DLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH----------------SNDED  187 (446)
Q Consensus       124 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~----------------~~~~~  187 (446)
                      ..+.+.|++++|+++|..+.+.++++.++.+|++|+.....+.. ...+++|.|+.++.                ..+++
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~-i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~  166 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNL-MITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD  166 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHH-HHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHH-HHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence            99999999999999995467899999999999999987644333 33567898887652                13679


Q ss_pred             HHHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhcCC------CCccchhHHHHHHHHhhcC
Q 043676          188 VLTYACWSLSYLADGTNDKIQAVIEA-GVCPRLVELLGH------PSPSVLTPALRTVGNIVTG  244 (446)
Q Consensus       188 v~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~l~~ll~~------~~~~~~~~a~~~l~~l~~~  244 (446)
                      +++++..+|.|++..+++..+.+.+. |+++.|+.+++.      .+...++.|+.+|.||+..
T Consensus       167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            99999999999998776666667765 778999999875      2557889999999999875

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.87  E-value=6.8e-22  Score=163.50  Aligned_cols=196  Identities=16%  Similarity=0.189  Sum_probs=166.3

Q ss_pred             ChHHHHHhhcCCCH--HHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhh
Q 043676            3 SFPALVAGVWSDDN--SLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSEN   80 (446)
Q Consensus         3 ~i~~l~~~l~s~~~--~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~   80 (446)
                      .+|.++++|.++++  +++..|++.+.+++..+ .+....+.+.|++|.|+++|.+++ +++|..|+++|.|++.+++++
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~n   86 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDN   86 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence            58999999999988  89999999999988764 566778899999999999999998 999999999999999988999


Q ss_pred             HHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhc---------------cccc
Q 043676           81 TNVVIDHGAVPIFVKLLS-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELN---------------EHAK  144 (446)
Q Consensus        81 ~~~~~~~~~i~~L~~~L~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~---------------~~~~  144 (446)
                      +..+.+.|+++.|+++|. +++.++++.++.+|+|++... ..+..+.+. ++++|+.++.               ...+
T Consensus        87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~-~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~  164 (233)
T 3tt9_A           87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND-KLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLD  164 (233)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG-GGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred             HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh-hhHHHHHhc-cHHHHHHHHhccccCCcccccccccccch
Confidence            999999999999999998 578999999999999999554 456666664 6888887652               0125


Q ss_pred             hhHHHHHHHHHHHhhcCC-CCCChhh-hhhhHHHHHHhhcCC------CHhHHHHHHHHHHHhccC
Q 043676          145 LSMLRNATRTLSNFCRGK-PEPPFDQ-VRPALPALAQLVHSN------DEDVLTYACWSLSYLADG  202 (446)
Q Consensus       145 ~~~~~~a~~~L~~l~~~~-~~~~~~~-~~~~~~~l~~ll~~~------~~~v~~~~~~~l~~l~~~  202 (446)
                      +.+++++..+|.||+... ..+..+. ..|+++.|+.+++..      +.+.++.++.+|.||+..
T Consensus       165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            689999999999999865 3344343 357889999999842      678999999999999865

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.84  E-value=3e-19  Score=173.63  Aligned_cols=380  Identities=11%  Similarity=0.122  Sum_probs=263.9

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV   83 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   83 (446)
                      +|.+.+.++++++.+|..|+.+|..++...  +.  ......++|.+..++.+++ ..+|..++.+|+.++...+.   .
T Consensus       205 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~--~~--~~~~~~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~---~  276 (588)
T 1b3u_A          205 IPMFSNLASDEQDSVRLLAVEACVNIAQLL--PQ--EDLEALVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP---E  276 (588)
T ss_dssp             HHHHHHHHTCSCHHHHTTHHHHHHHHHHHS--CH--HHHHHHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH---H
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHhC--CH--HHHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc---c
Confidence            344444444555555555555555444321  10  1112245666667776666 67777777777777651111   1


Q ss_pred             HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-HHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 043676           84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP-RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK  162 (446)
Q Consensus        84 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  162 (446)
                      .....+++.+..+++++++.+|..++++++.++...+ ..+........++.+..++ ++.++.++..++++|..++...
T Consensus       277 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~~~  355 (588)
T 1b3u_A          277 ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPIL  355 (588)
T ss_dssp             HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHH
T ss_pred             cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHh
Confidence            1223567888889999999999999999998885332 1111112234566777777 7788999999999999987642


Q ss_pred             CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhh
Q 043676          163 PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIV  242 (446)
Q Consensus       163 ~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~  242 (446)
                      ..  ......++|.+..+++++++.++..++.++..+.......   .....+++.+..++.+.++.+|..++.+++.++
T Consensus       356 ~~--~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~  430 (588)
T 1b3u_A          356 GK--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLA  430 (588)
T ss_dssp             CH--HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             hH--hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            11  1223567889999999999999999999998887543321   122367888889999999999999999999987


Q ss_pred             cCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHH
Q 043676          243 TGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG-NREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAW  321 (446)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~  321 (446)
                      ......   .....+++.+...+.++ +..+|..|+.+++.++.. .++    .....++|.+..++.+.++.+|..+++
T Consensus       431 ~~~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~----~~~~~llp~l~~~~~~~~~~~R~~a~~  502 (588)
T 1b3u_A          431 GQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLF  502 (588)
T ss_dssp             HHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH----HHHHHTHHHHHHTTTCSCHHHHHHHHH
T ss_pred             HHcCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence            532211   11223578888889888 899999999999999762 222    122358888888888889999999999


Q ss_pred             HHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHH
Q 043676          322 AISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEK  401 (446)
Q Consensus       322 aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  401 (446)
                      +++.++...+.+   . ....+++.|...+++++++++..+++++..+....+..                +.....++.
T Consensus       503 ~l~~l~~~~~~~---~-~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~----------------~~~~~~~p~  562 (588)
T 1b3u_A          503 CINVLSEVCGQD---I-TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS----------------TLQSEVKPI  562 (588)
T ss_dssp             HHHHHHHHHHHH---H-HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH----------------HHHHHHHHH
T ss_pred             HHHHHHHhcCHH---H-HHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchh----------------hhHHHHHHH
Confidence            999997642221   1 22358999999999999999999999999988643221                111344667


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhc
Q 043676          402 IENLQSHDNNEIHEKSVKIFKTYW  425 (446)
Q Consensus       402 l~~l~~~~~~~v~~~a~~~l~~~~  425 (446)
                      +..+..+++++++..|..++..+-
T Consensus       563 l~~l~~d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          563 LEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHcCCCchhHHHHHHHHHHHhh
Confidence            778889999999999999998764

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.83  E-value=6.7e-19  Score=171.12  Aligned_cols=381  Identities=10%  Similarity=0.066  Sum_probs=285.6

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV   83 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   83 (446)
                      +|.+.+.++++++.+|..++..|..++...  ..  ......++|.+..++++++ +.+|..|+.+|+.++...+..   
T Consensus       166 ~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~--~~--~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~---  237 (588)
T 1b3u_A          166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVL--EL--DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE---  237 (588)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHHHHHHHHHTS--CH--HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH---
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--cH--HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCHH---
Confidence            456667778889999999999999987753  21  1233467899999998888 899999999999988632221   


Q ss_pred             HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 043676           84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKP  163 (446)
Q Consensus        84 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  163 (446)
                      .....+++.+..++.++++.+|..++.+++.++...+.   .......++.+..++ +++++.++..++++|..++...+
T Consensus       238 ~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~  313 (588)
T 1b3u_A          238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENLS  313 (588)
T ss_dssp             HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHhC
Confidence            12234688888899999999999999999999843211   112334678888888 67889999999999999988753


Q ss_pred             CCCh--hhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHh
Q 043676          164 EPPF--DQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI  241 (446)
Q Consensus       164 ~~~~--~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l  241 (446)
                      ....  .....++|.+..++++.++.+|..++++++.++..-...   .....+++.+..+++++++.+|..++.+++.+
T Consensus       314 ~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l  390 (588)
T 1b3u_A          314 ADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNLDCV  390 (588)
T ss_dssp             TTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHH
T ss_pred             hhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence            3211  345678899999999999999999999999987543321   12236788999999999999999999999888


Q ss_pred             hcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCCcchHHHHH
Q 043676          242 VTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG-NREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAA  320 (446)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~  320 (446)
                      .......   .....+++.+..++.+. ++.+|..++.++..++.. ..+    .....+++.+...+.+.++.+|..|+
T Consensus       391 ~~~~~~~---~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~a~  462 (588)
T 1b3u_A          391 NEVIGIR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREAAT  462 (588)
T ss_dssp             HHHSCHH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHHHH
T ss_pred             HHhcCHH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence            7643221   12234678888888888 899999999999998751 111    11123678888889888999999999


Q ss_pred             HHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHH
Q 043676          321 WAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLE  400 (446)
Q Consensus       321 ~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  400 (446)
                      .+++.++....++.    ....+++.|..++.++++.++..+++++..+........                .....++
T Consensus       463 ~~l~~l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~----------------~~~~~~~  522 (588)
T 1b3u_A          463 SNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI----------------TTKHMLP  522 (588)
T ss_dssp             HHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH----------------HHHHTHH
T ss_pred             HHHHHHHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHH----------------HHHHHHH
Confidence            99999976533332    123478889999999999999999999999887543321                1134567


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 043676          401 KIENLQSHDNNEIHEKSVKIFKTYWCG  427 (446)
Q Consensus       401 ~l~~l~~~~~~~v~~~a~~~l~~~~~~  427 (446)
                      .+..+..+++++++..+.+.+..+...
T Consensus       523 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~  549 (588)
T 1b3u_A          523 TVLRMAGDPVANVRFNVAKSLQKIGPI  549 (588)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred             HHHhhCCCCCchHHHHHHHHHHHHHHH
Confidence            777888899999999999999888753

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.83  E-value=2.3e-19  Score=181.47  Aligned_cols=353  Identities=15%  Similarity=0.154  Sum_probs=257.1

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHH
Q 043676            5 PALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVV   84 (446)
Q Consensus         5 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~   84 (446)
                      +.+++.|.++++.+|..++.++..++..+.....     .++++.|++.+.+++ +.++..++.+|+.++...++....-
T Consensus        93 ~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~w-----p~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~~~  166 (852)
T 4fdd_A           93 SECLNNIGDSSPLIRATVGILITTIASKGELQNW-----PDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDSD  166 (852)
T ss_dssp             HHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTC-----TTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHHHC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcccc-----HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhchh
Confidence            4567778888999999999999999876422111     357999999999988 8999999999999987333221110


Q ss_pred             H----hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676           85 I----DHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR  160 (446)
Q Consensus        85 ~----~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  160 (446)
                      .    -..+++.+++++.++++.+|..|++++.++....+...... -...++.+...+ .++++.++..++++|..++.
T Consensus       167 ~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~-~~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~~  244 (852)
T 4fdd_A          167 VLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLH-IDSFIENLFALA-GDEEPEVRKNVCRALVMLLE  244 (852)
T ss_dssp             SSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTS-HHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHHH
T ss_pred             hhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHH
Confidence            0    12356777788888999999999999998886544211000 012466677776 67789999999999999998


Q ss_pred             CCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHH---hCcHHHHHHhc-----------CC-
Q 043676          161 GKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIE---AGVCPRLVELL-----------GH-  225 (446)
Q Consensus       161 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~---~~~~~~l~~ll-----------~~-  225 (446)
                      ..+..-.....++++.+...+.+.++.++..++.++..++......  ....   ..+++.++..+           .+ 
T Consensus       245 ~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~--~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~  322 (852)
T 4fdd_A          245 VRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICK--DVLVRHLPKLIPVLVNGMKYSDIDIILLKGDV  322 (852)
T ss_dssp             HCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHH--HHHTTTHHHHHHHHHHHTSCCHHHHHHHHC--
T ss_pred             hCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHH--HHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCc
Confidence            7643222334678888889999999999999999999998754311  1111   14566666666           33 


Q ss_pred             ----------CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHH
Q 043676          226 ----------PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAV  295 (446)
Q Consensus       226 ----------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~  295 (446)
                                .++.+|..|..++..++...+...   + ..+++.+...+.++ ++.+|..|++++++++.+..+.....
T Consensus       323 ~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~---~-~~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~  397 (852)
T 4fdd_A          323 EGGSGGDDTISDWNLRKCSAAALDVLANVYRDEL---L-PHILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPY  397 (852)
T ss_dssp             ----------CCCCHHHHHHHHHHHHHHHHGGGG---H-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGG
T ss_pred             ccccccccccccchHHHHHHHHHHHHHHhccHHH---H-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHH
Confidence                      345678899999999986443321   1 23677888888888 89999999999999998766544433


Q ss_pred             HHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHH-HHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhh
Q 043676          296 IDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQE-QIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGE  374 (446)
Q Consensus       296 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~-~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~  374 (446)
                      . .++++.++..+++.++.+|..|++++++++....+. ...+  -.++++.|.+.+.++++.++..++++|.++++...
T Consensus       398 l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~--~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~  474 (852)
T 4fdd_A          398 L-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY--LKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC  474 (852)
T ss_dssp             H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTT--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG
T ss_pred             H-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence            3 368899999999999999999999999997631110 0011  12367888888888999999999999999987655


Q ss_pred             h
Q 043676          375 A  375 (446)
Q Consensus       375 ~  375 (446)
                      .
T Consensus       475 ~  475 (852)
T 4fdd_A          475 T  475 (852)
T ss_dssp             G
T ss_pred             H
Confidence            4

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.82  E-value=2.2e-19  Score=181.61  Aligned_cols=397  Identities=11%  Similarity=0.102  Sum_probs=263.8

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV   83 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   83 (446)
                      +|.+++.++++++.+|..|++++..+....  .......-..+++.+..++.+++ +++|..|+++|..++...++....
T Consensus       176 l~~l~~~l~~~~~~vR~~A~~aL~~~~~~~--~~~~~~~~~~~l~~l~~~~~d~~-~~vr~~a~~~L~~l~~~~~~~~~~  252 (852)
T 4fdd_A          176 IPKFLQFFKHSSPKIRSHAVACVNQFIISR--TQALMLHIDSFIENLFALAGDEE-PEVRKNVCRALVMLLEVRMDRLLP  252 (852)
T ss_dssp             HHHHTTTTTCSSHHHHHHHHHHHHTTTTTT--CHHHHTSHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHhCHHHHHH
Confidence            567788888999999999999999877642  21111111246788888888888 899999999999999855543222


Q ss_pred             HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHH--cCChHHHHHHhc----------cc---------
Q 043676           84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLS--QGALIPLLAELN----------EH---------  142 (446)
Q Consensus        84 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~--~~~i~~l~~~l~----------~~---------  142 (446)
                      .++ ++++.+...+.+.++.++..|++++..++.... .+..+..  ...++.++..+.          .+         
T Consensus       253 ~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~-~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd  330 (852)
T 4fdd_A          253 HMH-NIVEYMLQRTQDQDENVALEACEFWLTLAEQPI-CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDD  330 (852)
T ss_dssp             GHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT-HHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC----------
T ss_pred             HHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccccc
Confidence            222 467888889999999999999999999985432 2222110  123455555551          12         


Q ss_pred             --cchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHH
Q 043676          143 --AKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLV  220 (446)
Q Consensus       143 --~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~  220 (446)
                        .+..++..+..+|..++...+   ......++|.+..++.++++.+|..++++++.++........... .++++.++
T Consensus       331 ~~~~~~vr~~a~~~L~~la~~~~---~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l~  406 (852)
T 4fdd_A          331 TISDWNLRKCSAAALDVLANVYR---DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLI  406 (852)
T ss_dssp             --CCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHH
Confidence              223568889999998887643   134467888888999999999999999999999988765443322 37889999


Q ss_pred             HhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 043676          221 ELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGL  300 (446)
Q Consensus       221 ~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~  300 (446)
                      ..+.++++.+|..|++++++++...........-..+++.++..+.++ ++.+|..|++++.+++........... .++
T Consensus       407 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~-~~~vr~~a~~aL~~l~~~~~~~l~~~l-~~l  484 (852)
T 4fdd_A          407 QCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS-NKRVQEAACSAFATLEEEACTELVPYL-AYI  484 (852)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHGGGGGGGH-HHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHhhHhhHhHH-HHH
Confidence            999999999999999999999864221110111224678888888888 899999999999999853211111111 135


Q ss_pred             hHHHHHHHhcCCcchHHHHHHHHHHhc---------------------------------------------cCCCHHHH
Q 043676          301 IRPIVNLLQNAEFDTKKEAAWAISNAT---------------------------------------------SGGTQEQI  335 (446)
Q Consensus       301 i~~L~~ll~~~~~~v~~~a~~aL~~l~---------------------------------------------~~~~~~~~  335 (446)
                      ++.|+..++..+......++.++..++                                             ........
T Consensus       485 l~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~  564 (852)
T 4fdd_A          485 LDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFL  564 (852)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGH
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhHhHH
Confidence            555555555443333333333333332                                             21111111


Q ss_pred             HHHHHcCChHHHHhcc-----------------cCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhCh
Q 043676          336 KHLVREGCVKPLCDLL-----------------LCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGG  398 (446)
Q Consensus       336 ~~l~~~~~i~~L~~ll-----------------~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  398 (446)
                      .++-.  +++.++..+                 +.++.+++..+++.+..++...+..            +...+...+.
T Consensus       565 ~~~~~--i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~------------~~~~~~~~~~  630 (852)
T 4fdd_A          565 PYCEP--VYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGN------------IEQLVARSNI  630 (852)
T ss_dssp             HHHHH--HHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGG------------GHHHHHTCCH
T ss_pred             HHHHH--HHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHh------------HHHHhcCCcH
Confidence            11000  112122222                 1235678888899999888765543            3455556788


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 043676          399 LEKIENLQSHDNNEIHEKSVKIFKTYW  425 (446)
Q Consensus       399 ~~~l~~l~~~~~~~v~~~a~~~l~~~~  425 (446)
                      ++.+..+..++++++++.+..++..+.
T Consensus       631 ~~~l~~~l~~~~~~vr~~a~~~l~~l~  657 (852)
T 4fdd_A          631 LTLMYQCMQDKMPEVRQSSFALLGDLT  657 (852)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence            888888888888999999888888764

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.81  E-value=1.7e-16  Score=146.89  Aligned_cols=415  Identities=13%  Similarity=0.152  Sum_probs=301.3

Q ss_pred             ChHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCCCC----------------cHHHH-HhcCCHHHHHHhhcCCCChHHH
Q 043676            3 SFPALVAGVWS--DDNSLQLEATTLSRKLLSFDRNP----------------PIEKV-IQSGVVPRFVEFLMREDYPQLQ   63 (446)
Q Consensus         3 ~i~~l~~~l~s--~~~~~~~~a~~~l~~l~~~~~~~----------------~~~~~-~~~~~~~~L~~ll~~~~~~~~~   63 (446)
                      +++.|+..|+.  +|.+....++..|.++.+.+..+                ..+.+ .+.+.++.|+.+|++.+ ..+|
T Consensus        61 ~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~vR  139 (651)
T 3grl_A           61 AMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FHVR  139 (651)
T ss_dssp             THHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HHHH
T ss_pred             hHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HHHH
Confidence            68899999985  57888889999998887754221                11223 34578999999999998 8999


Q ss_pred             HHHHHHHHHHcCCChh-hHHHHHh-cCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcc
Q 043676           64 YEAAWVLINIASGTSE-NTNVVID-HGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE  141 (446)
Q Consensus        64 ~~a~~~L~~l~~~~~~-~~~~~~~-~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~  141 (446)
                      ..++.+|..++...++ ..+.+.. .++++.|+.+|.++.+.+|..++.+|.+++.++++.++.+...|+++.+++++..
T Consensus       140 ~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~  219 (651)
T 3grl_A          140 WPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITE  219 (651)
T ss_dssp             HHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHh
Confidence            9999999999986766 6777774 4999999999999999999999999999999999999999999999999999954


Q ss_pred             cc---chhHHHHHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhcCCCH------hHHHH---HHHHHHHhccCC-----
Q 043676          142 HA---KLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLVHSNDE------DVLTY---ACWSLSYLADGT-----  203 (446)
Q Consensus       142 ~~---~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~~~------~v~~~---~~~~l~~l~~~~-----  203 (446)
                      ..   ...+...++.++.+|.+.. .+.......++++.|..++..+++      ....+   ++.++.-++...     
T Consensus       220 Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~  299 (651)
T 3grl_A          220 EGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGA  299 (651)
T ss_dssp             HTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHH
T ss_pred             cCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            33   2367899999999999997 355666668999999999975432      23333   566666666542     


Q ss_pred             -cHHHHHHHHhCcHHHHHHhcCCC--CccchhHHHHHHHHhhcCCchhhHHHHhcC---------ChHHHHHHhccCchH
Q 043676          204 -NDKIQAVIEAGVCPRLVELLGHP--SPSVLTPALRTVGNIVTGDDFQTQCIINHG---------AVPYLLDMLVHNHEE  271 (446)
Q Consensus       204 -~~~~~~~~~~~~~~~l~~ll~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~---------~~~~l~~~l~~~~~~  271 (446)
                       ......+.+.|+++.+++++...  ...++..|+.+++.+..+++.....+.+..         ++..++.++.+....
T Consensus       300 t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~  379 (651)
T 3grl_A          300 TSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPF  379 (651)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCH
T ss_pred             CHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccH
Confidence             23455688999999999998875  556888999999999999988777766432         333445556555468


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHc----------CCh---HHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHH
Q 043676          272 IIKKEISWIISNITAGNREQIQAVIDA----------GLI---RPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHL  338 (446)
Q Consensus       272 ~v~~~a~~~l~~l~~~~~~~~~~~~~~----------~~i---~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l  338 (446)
                      .+|.+|+.++..+..++++....+...          +.+   ..+..-+-+.|+.--..|+.++.++... +++....+
T Consensus       380 ~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~-n~~~K~~~  458 (651)
T 3grl_A          380 VLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQE-NATQKEQL  458 (651)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcC-CHHHHHHH
Confidence            899999999999998888766666542          111   1244455556665556688888888765 45554443


Q ss_pred             HH--------cCC---hHHHHhcccC-CCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhh
Q 043676          339 VR--------EGC---VKPLCDLLLC-SDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQ  406 (446)
Q Consensus       339 ~~--------~~~---i~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~  406 (446)
                      ..        +..   ++.+...|.. .++.++..-+-.|..++..++..            ...++.+...++.|....
T Consensus       459 l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~A------------V~dFL~~~s~l~~L~~~i  526 (651)
T 3grl_A          459 LRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPIA------------VTHFLHNSANVPFLTGQI  526 (651)
T ss_dssp             TTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHHH------------HHHHHHSTTHHHHHHHHH
T ss_pred             HhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChHH------------HHHHHcCCchHHHHHHHH
Confidence            33        111   4444555543 45666666666677666655554            467777777788877655


Q ss_pred             cC-CC---HHHHHHHHHHHHHhcCCCCCc
Q 043676          407 SH-DN---NEIHEKSVKIFKTYWCGRNEE  431 (446)
Q Consensus       407 ~~-~~---~~v~~~a~~~l~~~~~~~~~~  431 (446)
                      .+ ..   .-++-.+.-+|..+|+-.+++
T Consensus       527 ~~~~~~~~~lvqGL~a~LLGi~yef~~~~  555 (651)
T 3grl_A          527 AENLGEEEQLVQGLCALLLGISIYFNDNS  555 (651)
T ss_dssp             HSCCCHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred             HhccCcchHHHHHHHHHHHHHHhhccCCC
Confidence            33 22   336788888888776644433

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.80  E-value=1.1e-16  Score=154.45  Aligned_cols=375  Identities=17%  Similarity=0.177  Sum_probs=262.1

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676            3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN   82 (446)
Q Consensus         3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~   82 (446)
                      .++.+++.+.+++..++..+...+..++...  +  +..  .-+++.+.+-+++++ +.+|..|+++|+++..  ++...
T Consensus        50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~--~--e~~--~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~~--~~~~~  120 (591)
T 2vgl_B           50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ--P--DMA--IMAVNSFVKDCEDPN-PLIRALAVRTMGCIRV--DKITE  120 (591)
T ss_dssp             GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS--H--HHH--HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCCS--GGGHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcccC--c--hHH--HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCCh--HHHHH
Confidence            3566778888888888888777777765531  1  111  135778888889888 8999999999999864  44444


Q ss_pred             HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 043676           83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK  162 (446)
Q Consensus        83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  162 (446)
                      .+     ++.+.+++.++++.+|..|+.++.+++...++.   +...+.++.+..++ .+.++.++..|+++|..++...
T Consensus       121 ~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~~  191 (591)
T 2vgl_B          121 YL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISESH  191 (591)
T ss_dssp             HH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhhC
Confidence            33     577899999999999999999999999755542   22235677888888 6889999999999999999886


Q ss_pred             CCC-ChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHh
Q 043676          163 PEP-PFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI  241 (446)
Q Consensus       163 ~~~-~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l  241 (446)
                      +.. ........++.++..+.+.++..+..++.++..++..++....     .+++.+..++++.++.++..|++++..+
T Consensus       192 ~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~l  266 (591)
T 2vgl_B          192 PNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHANSAVVLSAVKVLMKF  266 (591)
T ss_dssp             CSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHHS
T ss_pred             CCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            533 3334456678888888888999999999999988865543332     5678888899999999999999999998


Q ss_pred             hcC---CchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHH------------------HHH----HHH
Q 043676          242 VTG---DDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNRE------------------QIQ----AVI  296 (446)
Q Consensus       242 ~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~------------------~~~----~~~  296 (446)
                      ...   +++....+. ..+.+.++.++. + ++.+|..|+.++..+....++                  .+.    .+.
T Consensus       267 ~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~  343 (591)
T 2vgl_B          267 LELLPKDSDYYNMLL-KKLAPPLVTLLS-G-EPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMI  343 (591)
T ss_dssp             CCSCCBTTBSHHHHH-HHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHH
T ss_pred             hhccCCCHHHHHHHH-HHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHH
Confidence            742   333333222 234566665553 5 677888888877777641110                  000    111


Q ss_pred             ---Hc----CChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHH
Q 043676          297 ---DA----GLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENI  369 (446)
Q Consensus       297 ---~~----~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l  369 (446)
                         +.    .+++.|...+.+.+.+++..++++++.++... +.....     +++.|.+++.+..+.++..++.++..+
T Consensus       344 ~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~-~~~~~~-----~v~~Ll~ll~~~~~~v~~e~i~~l~~i  417 (591)
T 2vgl_B          344 RLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKV-EQSAER-----CVSTLLDLIQTKVNYVVQEAIVVIRDI  417 (591)
T ss_dssp             HTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC-HHHHHH-----HHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-hhHHHH-----HHHHHHHHHcccchHHHHHHHHHHHHH
Confidence               11    24556666777778899999999999998764 332222     578888888888888888888888887


Q ss_pred             HHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhh-cCCCHHHHHHHHHHHHHhcCC
Q 043676          370 LKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQ-SHDNNEIHEKSVKIFKTYWCG  427 (446)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~-~~~~~~v~~~a~~~l~~~~~~  427 (446)
                      +...+...                  ..++..|.+.. ....++++..+.|++..|-..
T Consensus       418 i~~~p~~~------------------~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~  458 (591)
T 2vgl_B          418 FRKYPNKY------------------ESIIATLCENLDSLDEPDARAAMIWIVGEYAER  458 (591)
T ss_dssp             HHHSCSSC------------------CTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTT
T ss_pred             HHHCcchH------------------HHHHHHHHHHHHhccCHHHHHHHHHHHHccccc
Confidence            76544321                  12233333333 345677777777888777443

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.76  E-value=1.6e-15  Score=140.46  Aligned_cols=368  Identities=15%  Similarity=0.137  Sum_probs=268.8

Q ss_pred             ChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCC-CChHHHHHHHHHHHHHcCCChh-
Q 043676            3 SFPALVAGVWSD-DNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRE-DYPQLQYEAAWVLINIASGTSE-   79 (446)
Q Consensus         3 ~i~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~~~~~~a~~~L~~l~~~~~~-   79 (446)
                      .|+.|...+.+. -.+-|+.|+..|..++..  .+   ..+..++++.|+..|+.+ ++.++...++.+|.++...+++ 
T Consensus        22 tI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~--y~---~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~   96 (651)
T 3grl_A           22 TIQKLCDRVASSTLLDDRRNAVRALKSLSKK--YR---LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE   96 (651)
T ss_dssp             HHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT--TT---THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred             HHHHHHHHHhhccchhHHHHHHHHHHHHHHH--hH---HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence            467888888754 478899999999987543  21   233346799999999775 3378888899999887763332 


Q ss_pred             ----------------hHHHHH-hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChH-HHHHHHHc-CChHHHHHHhc
Q 043676           80 ----------------NTNVVI-DHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPR-CRDLVLSQ-GALIPLLAELN  140 (446)
Q Consensus        80 ----------------~~~~~~-~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~-~~~~~~~~-~~i~~l~~~l~  140 (446)
                                      ..+.++ +.+.++.|+.+|++.+..+|..++.+|..++...+. .++.+... ++++.|+.+| 
T Consensus        97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL-  175 (651)
T 3grl_A           97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL-  175 (651)
T ss_dssp             -----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG-
T ss_pred             cccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH-
Confidence                            222333 557899999999999999999999999999988776 77777755 8999999999 


Q ss_pred             cccchhHHHHHHHHHHHhhcCCC-CCChhhhhhhHHHHHHhhcCCC----HhHHHHHHHHHHHhccCCcHHHHHHHHhCc
Q 043676          141 EHAKLSMLRNATRTLSNFCRGKP-EPPFDQVRPALPALAQLVHSND----EDVLTYACWSLSYLADGTNDKIQAVIEAGV  215 (446)
Q Consensus       141 ~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~l~~ll~~~~----~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~  215 (446)
                      ++..+.++..++..|.+++.+.+ ........|+++.|+.+++.+.    ..+...++.++.++.+.++.+...+.+.++
T Consensus       176 ~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~  255 (651)
T 3grl_A          176 ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSY  255 (651)
T ss_dssp             GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCC
Confidence            67788999999999999999984 3444556799999999998654    488999999999999999888888999999


Q ss_pred             HHHHHHhcCCCCcc------chhH---HHHHHHHhhcCC------chhhHHHHhcCChHHHHHHhccC-chHHHHHHHHH
Q 043676          216 CPRLVELLGHPSPS------VLTP---ALRTVGNIVTGD------DFQTQCIINHGAVPYLLDMLVHN-HEEIIKKEISW  279 (446)
Q Consensus       216 ~~~l~~ll~~~~~~------~~~~---a~~~l~~l~~~~------~~~~~~~~~~~~~~~l~~~l~~~-~~~~v~~~a~~  279 (446)
                      ++.|..++..++..      ....   ++.++.-++...      ..+...+.+.|+++.+++++..+ -...++..|+.
T Consensus       256 i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~  335 (651)
T 3grl_A          256 IQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETIN  335 (651)
T ss_dssp             GGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred             HHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHH
Confidence            99999999864322      1122   566666666542      23556677999999999998754 25689999999


Q ss_pred             HHHHHhcCCHHHHHHHHHcC---------ChHHHHHHHhcC-CcchHHHHHHHHHHhccCCCHHHHHHHHHc----C---
Q 043676          280 IISNITAGNREQIQAVIDAG---------LIRPIVNLLQNA-EFDTKKEAAWAISNATSGGTQEQIKHLVRE----G---  342 (446)
Q Consensus       280 ~l~~l~~~~~~~~~~~~~~~---------~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~----~---  342 (446)
                      +++.++.+++.....+.+..         ++..|+.++.+. ...+|..|+.++.....++ ++....+...    .   
T Consensus       336 tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N-~~~Q~~i~~~llp~~~~~  414 (651)
T 3grl_A          336 TVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKN-QKGQGEIVSTLLPSTIDA  414 (651)
T ss_dssp             HHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTSSCCCCC
T ss_pred             HHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCC-HHHHHHHHHhcCCccccc
Confidence            99999999999888887643         233344445444 5688999999999998764 4333333332    0   


Q ss_pred             ---ChH---HHHhcccCCCHHHHHHHHHHHHHHHHhhhhhh
Q 043676          343 ---CVK---PLCDLLLCSDPEIVTVCLIGLENILKVGEAER  377 (446)
Q Consensus       343 ---~i~---~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~  377 (446)
                         .+.   .+..-+-+.|+.-.--+.-++..++...+..+
T Consensus       415 ~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~K  455 (651)
T 3grl_A          415 TGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQK  455 (651)
T ss_dssp             TTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHHH
Confidence               011   13333334555332335556666666555443

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.74  E-value=4e-16  Score=136.31  Aligned_cols=259  Identities=15%  Similarity=0.119  Sum_probs=202.9

Q ss_pred             HHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh
Q 043676           41 VIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP  120 (446)
Q Consensus        41 ~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~  120 (446)
                      ....+.++.|+..|.+++ +.+|..|+++|+++..  +         +.++.|..++.++++.+|..++++|+.+.....
T Consensus        19 ~~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~   86 (280)
T 1oyz_A           19 QCKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK   86 (280)
T ss_dssp             HHHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT
T ss_pred             HHHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc
Confidence            345678999999999988 8999999999999974  2         357889999999999999999999999874332


Q ss_pred             HHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhc
Q 043676          121 RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLA  200 (446)
Q Consensus       121 ~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~  200 (446)
                      ... .     .++.+...+..++++.++..++++|..+....+    ......++.+...+.++++.++..++.+++.+.
T Consensus        87 ~~~-~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~  156 (280)
T 1oyz_A           87 CED-N-----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN  156 (280)
T ss_dssp             THH-H-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred             cch-H-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC
Confidence            211 1     223343333367889999999999999975431    123567899999999999999999999999875


Q ss_pred             cCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHH
Q 043676          201 DGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWI  280 (446)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~  280 (446)
                      .           .+.++.|+.++.++++.+|..|+++|+.+....+         ..++.+...+.++ ++.+|..|+++
T Consensus       157 ~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~a  215 (280)
T 1oyz_A          157 D-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIG  215 (280)
T ss_dssp             -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred             C-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHH
Confidence            3           2578999999999999999999999999864332         2467888999888 89999999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccC-CCHHHH
Q 043676          281 ISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC-SDPEIV  359 (446)
Q Consensus       281 l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~  359 (446)
                      |+++.  +         ...++.|+..+.+.  +++..|+.+|+.+..   +         ..++.|.+++.+ ++++++
T Consensus       216 L~~~~--~---------~~~~~~L~~~l~d~--~vr~~a~~aL~~i~~---~---------~~~~~L~~~l~~~~~~~~~  270 (280)
T 1oyz_A          216 LSYRK--D---------KRVLSVLCDELKKN--TVYDDIIEAAGELGD---K---------TLLPVLDTMLYKFDDNEII  270 (280)
T ss_dssp             HHHTT--C---------GGGHHHHHHHHTSS--SCCHHHHHHHHHHCC---G---------GGHHHHHHHHTTSSCCHHH
T ss_pred             HHHhC--C---------HhhHHHHHHHhcCc--cHHHHHHHHHHhcCc---h---------hhhHHHHHHHhcCCCcHHH
Confidence            99984  2         24788899999764  489999999999854   1         367888888854 567777


Q ss_pred             HHHHHHHH
Q 043676          360 TVCLIGLE  367 (446)
Q Consensus       360 ~~~~~~l~  367 (446)
                      ..++..+.
T Consensus       271 ~~~~~~l~  278 (280)
T 1oyz_A          271 TSAIDKLK  278 (280)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            77777664

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.74  E-value=1.1e-16  Score=154.41  Aligned_cols=330  Identities=12%  Similarity=0.110  Sum_probs=221.0

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV   83 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   83 (446)
                      +|.+.+.+.+.++.+|..|+.++.++.... .+..   .+.++++.+.++|.+++ +.++..|+.+|+.++..+++....
T Consensus       123 ~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p~~~---~~~~~~~~l~~lL~d~d-~~V~~~A~~aL~~i~~~~~~~~~~  197 (591)
T 2vgl_B          123 CEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-AQMV---EDQGFLDSLRDLIADSN-PMVVANAVAALSEISESHPNSNLL  197 (591)
T ss_dssp             HHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-CCCH---HHHHHHHHHHHTTSCSC-HHHHHHHHHHHHHHTTSCCSCCSC
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHhhC-hhhc---ccccHHHHHHHHhCCCC-hhHHHHHHHHHHHHHhhCCCccch
Confidence            456888899999999999999999998864 3322   23467899999999888 999999999999999865533100


Q ss_pred             HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-
Q 043676           84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK-  162 (446)
Q Consensus        84 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-  162 (446)
                      -...+.+..|+..+.+.++-.+...+.++..++...+....     ..++.+...+ ++.++.++..+++++..+.... 
T Consensus       198 ~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l-~~~~~~V~~ea~~~i~~l~~~~~  271 (591)
T 2vgl_B          198 DLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRL-SHANSAVVLSAVKVLMKFLELLP  271 (591)
T ss_dssp             CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCS-CSSTTHHHHHHHHHHHHSCCSCC
T ss_pred             hccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHH-cCCChHHHHHHHHHHHHHhhccC
Confidence            00112356677777778888888999999888855443322     2355666666 6788999999999999997532 


Q ss_pred             --CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHH
Q 043676          163 --PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN  240 (446)
Q Consensus       163 --~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~  240 (446)
                        +.........+.+.++.++. +++.++..++.++..+....++...     ..+..+. .+.+.+..++..++.++..
T Consensus       272 ~~~~~~~~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~-----~~~~~~~-~~~~d~~~Ir~~al~~L~~  344 (591)
T 2vgl_B          272 KDSDYYNMLLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILK-----QEIKVFF-VKYNDPIYVKLEKLDIMIR  344 (591)
T ss_dssp             BTTBSHHHHHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTT-----TCTTTTS-CCTTSCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHH-----HHHHhhe-eccCChHHHHHHHHHHHHH
Confidence              11111123456677776654 7899999999999998865443221     1112121 2223346788888888888


Q ss_pred             hhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHH
Q 043676          241 IVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAA  320 (446)
Q Consensus       241 l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~  320 (446)
                      ++...  ....     +++.+...+.+. +.++|..+++++++++...+....     .+++.|++++.+....++..+.
T Consensus       345 l~~~~--nv~~-----iv~~L~~~l~~~-d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i  411 (591)
T 2vgl_B          345 LASQA--NIAQ-----VLAELKEYATEV-DVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTKVNYVVQEAI  411 (591)
T ss_dssp             TCCSS--THHH-----HHHHHHHHTTSS-CHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTCCHHHHHHHH
T ss_pred             HCChh--hHHH-----HHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHcccchHHHHHHH
Confidence            87533  2222     456677777777 788888888888888775543322     3567777777777777777777


Q ss_pred             HHHHHhccCCCHHHHHHHHHcCChHHHHhccc-CCCHHHHHHHHHHHHHHH
Q 043676          321 WAISNATSGGTQEQIKHLVREGCVKPLCDLLL-CSDPEIVTVCLIGLENIL  370 (446)
Q Consensus       321 ~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~~~~~l~~l~  370 (446)
                      .++.++..... +.     ...+++.|.+.++ ..++.++..++|+|+.+.
T Consensus       412 ~~l~~ii~~~p-~~-----~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~  456 (591)
T 2vgl_B          412 VVIRDIFRKYP-NK-----YESIIATLCENLDSLDEPDARAAMIWIVGEYA  456 (591)
T ss_dssp             HHHHHHHHHSC-SS-----CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCc-ch-----HHHHHHHHHHHHHhccCHHHHHHHHHHHHccc
Confidence            77777654311 11     1234566666664 345666666666666643

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.71  E-value=9.7e-16  Score=133.88  Aligned_cols=254  Identities=14%  Similarity=0.105  Sum_probs=198.9

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhH
Q 043676            2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENT   81 (446)
Q Consensus         2 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~   81 (446)
                      +.++.|++.|.++++.++..|++.|.++..            .+.++.|+.++.+++ +.+|..|+++|+.+... +...
T Consensus        23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~-~~~~   88 (280)
T 1oyz_A           23 LNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKIC-KKCE   88 (280)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCC-TTTH
T ss_pred             hhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccc-cccc
Confidence            468899999999999999999999998642            146889999999998 89999999999999752 2211


Q ss_pred             HHHHhcCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676           82 NVVIDHGAVPIFV-KLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR  160 (446)
Q Consensus        82 ~~~~~~~~i~~L~-~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  160 (446)
                      ..     .++.|. .+++++++.+|..++++|+++....+....     ..++.++..+ .++++.++..++++|.++..
T Consensus        89 ~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~  157 (280)
T 1oyz_A           89 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITA-FDKSTNVRRATAFAISVIND  157 (280)
T ss_dssp             HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT-TCSCHHHHHHHHHHHHTC--
T ss_pred             hH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHh-hCCCHHHHHHHHHHHHhcCC
Confidence            11     234444 346788999999999999999844332222     2467888888 78899999999999998754


Q ss_pred             CCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHH
Q 043676          161 GKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN  240 (446)
Q Consensus       161 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~  240 (446)
                      .          ..++.|..++.++++.++..++++|+.+....+         ..++.+..++.++++.+|..|+++|+.
T Consensus       158 ~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~  218 (280)
T 1oyz_A          158 K----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSY  218 (280)
T ss_dssp             -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             H----------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            2          368999999999999999999999999854332         346788899999999999999999998


Q ss_pred             hhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-CCcchHHHH
Q 043676          241 IVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQN-AEFDTKKEA  319 (446)
Q Consensus       241 l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a  319 (446)
                      +..           ...++.+...+.++ +  ++..++++|+.+..  +         ..++.|..++.+ .++++...+
T Consensus       219 ~~~-----------~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~--~---------~~~~~L~~~l~~~~~~~~~~~~  273 (280)
T 1oyz_A          219 RKD-----------KRVLSVLCDELKKN-T--VYDDIIEAAGELGD--K---------TLLPVLDTMLYKFDDNEIITSA  273 (280)
T ss_dssp             TTC-----------GGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC--G---------GGHHHHHHHHTTSSCCHHHHHH
T ss_pred             hCC-----------HhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc--h---------hhhHHHHHHHhcCCCcHHHHHH
Confidence            862           24678889999876 3  88999999999832  2         478889999875 467788887


Q ss_pred             HHHHH
Q 043676          320 AWAIS  324 (446)
Q Consensus       320 ~~aL~  324 (446)
                      ..++.
T Consensus       274 ~~~l~  278 (280)
T 1oyz_A          274 IDKLK  278 (280)
T ss_dssp             HHHHT
T ss_pred             HHHhh
Confidence            77764

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.71  E-value=7.7e-16  Score=148.99  Aligned_cols=359  Identities=13%  Similarity=0.111  Sum_probs=258.7

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV   83 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   83 (446)
                      +..|.+.|+++|+.++..|+++|.++...       .+. ..+++.+.+++.+++ +.+|..|+.++.++...+++... 
T Consensus       109 in~l~kDL~~~n~~vr~lAL~~L~~i~~~-------~~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v~-  178 (618)
T 1w63_A          109 TNCIKNDLNHSTQFVQGLALCTLGCMGSS-------EMC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELME-  178 (618)
T ss_dssp             HHHHHHHHSCSSSHHHHHHHHHHHHHCCH-------HHH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGGG-
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHhcCCH-------HHH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHHH-
Confidence            46778889999999999999999987531       222 256888999999999 99999999999999986665432 


Q ss_pred             HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcc--------------ccchhHHH
Q 043676           84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE--------------HAKLSMLR  149 (446)
Q Consensus        84 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--------------~~~~~~~~  149 (446)
                          +.++.+..++.+.++.++..|+.++..++..++.....+  ...++.++..|.+              ..++-.+.
T Consensus       179 ----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~  252 (618)
T 1w63_A          179 ----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQV  252 (618)
T ss_dssp             ----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHH
T ss_pred             ----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHH
Confidence                578888899999999999999999999997765532222  2568888887743              24778888


Q ss_pred             HHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc------CCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc
Q 043676          150 NATRTLSNFCRGKPEPPFDQVRPALPALAQLVH------SNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELL  223 (446)
Q Consensus       150 ~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~------~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll  223 (446)
                      .++.+|..++...+.    ....+.+.|..++.      +.+..+...+++++..+... +.    +.. .+++.|..++
T Consensus       253 ~il~~L~~l~~~~~~----~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~----l~~-~a~~~L~~~L  322 (618)
T 1w63_A          253 RILRLLRILGRNDDD----SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE-SG----LRV-LAINILGRFL  322 (618)
T ss_dssp             HHHHHHHHHTTTCHH----HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HH----HHH-HHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHH----HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC-HH----HHH-HHHHHHHHHH
Confidence            899999999876421    12334455555543      23568899999999887542 21    111 4567888889


Q ss_pred             CCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH
Q 043676          224 GHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRP  303 (446)
Q Consensus       224 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~  303 (446)
                      .+.++.++..|+.+|..++...+..    + ......++..+.++ +..+|..|+.++..++....  ..     .+++.
T Consensus       323 ~~~d~~vr~~aL~~L~~i~~~~p~~----~-~~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~~~n--v~-----~iv~e  389 (618)
T 1w63_A          323 LNNDKNIRYVALTSLLKTVQTDHNA----V-QRHRSTIVDCLKDL-DVSIKRRAMELSFALVNGNN--IR-----GMMKE  389 (618)
T ss_dssp             TCSSTTTHHHHHHHHHHHHHHHHHH----H-GGGHHHHHHGGGSS-CHHHHHHHHHHHHHHCCSSS--TH-----HHHHH
T ss_pred             hCCCCchHHHHHHHHHHHHhhCHHH----H-HHHHHHHHHHccCC-ChhHHHHHHHHHHHHccccc--HH-----HHHHH
Confidence            9999999999999999999754432    2 23567888999988 99999999999999976421  12     24677


Q ss_pred             HHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCC
Q 043676          304 IVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTI  383 (446)
Q Consensus       304 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~  383 (446)
                      |...+.+.+.+++..++.+++.++....+.. ..     +++.|++++......+...++..+..++...+..+      
T Consensus       390 L~~~l~~~d~e~r~~~v~~I~~la~k~~~~~-~~-----~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~------  457 (618)
T 1w63_A          390 LLYFLDSCEPEFKADCASGIFLAAEKYAPSK-RW-----HIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMH------  457 (618)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHSSCCCH-HH-----HHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTH------
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHhCccH-HH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHH------
Confidence            8888888899999999999999988532222 22     36778888877666666666677777776544321      


Q ss_pred             CccchHHHHHHHhChHHHHHHhhc--CCCHHHHHHHHHHHHHhc
Q 043676          384 GDVNQYAQFVEEAGGLEKIENLQS--HDNNEIHEKSVKIFKTYW  425 (446)
Q Consensus       384 ~~~~~~~~~l~~~~~~~~l~~l~~--~~~~~v~~~a~~~l~~~~  425 (446)
                             ..     ++..+..+..  ...+.+...+.|++..|-
T Consensus       458 -------~~-----~v~~L~~~l~~~~~~~~~~~~~~wilGEy~  489 (618)
T 1w63_A          458 -------AY-----TVQRLYKAILGDYSQQPLVQVAAWCIGEYG  489 (618)
T ss_dssp             -------HH-----HHHHHHHHHHHCCSCSHHHHHHHHHHHHHH
T ss_pred             -------HH-----HHHHHHHHHhcccccHHHHHHHHHHHhhhH
Confidence                   11     1223333322  234455667899999885

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.68  E-value=6.3e-15  Score=149.71  Aligned_cols=359  Identities=14%  Similarity=0.149  Sum_probs=246.2

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCC----------------CCcHHHHHhcCCHHHHHHhhcCCC------ChH
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDR----------------NPPIEKVIQSGVVPRFVEFLMRED------YPQ   61 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~----------------~~~~~~~~~~~~~~~L~~ll~~~~------~~~   61 (446)
                      ++.+...+.+.++.++..++..+..++....                ........ ..++|.++..+...+      ...
T Consensus       268 ~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~  346 (861)
T 2bpt_A          268 YALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWN  346 (861)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCH
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCc
Confidence            4555667778889999999999988765310                01111222 357888888887521      247


Q ss_pred             HHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-HHHHHHHHcCChHHHHHHhc
Q 043676           62 LQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP-RCRDLVLSQGALIPLLAELN  140 (446)
Q Consensus        62 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~i~~l~~~l~  140 (446)
                      ++..+..+|..++...++.   ++ ..+++.+...+.++++.+|+.++++++.++.... ..-..... .+++.++..+ 
T Consensus       347 ~r~~a~~~L~~l~~~~~~~---~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l-  420 (861)
T 2bpt_A          347 VSMSAGACLQLFAQNCGNH---IL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLM-  420 (861)
T ss_dssp             HHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGG-
T ss_pred             HHHHHHHHHHHHHHHccHh---HH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHc-
Confidence            8999999999988622211   11 1346777778888899999999999999996642 21111111 2567777777 


Q ss_pred             cccchhHHHHHHHHHHHhhcCCCC--CChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCc----HHHHHHHHhC
Q 043676          141 EHAKLSMLRNATRTLSNFCRGKPE--PPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTN----DKIQAVIEAG  214 (446)
Q Consensus       141 ~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~----~~~~~~~~~~  214 (446)
                      .++++.++..++|+++.++.....  ........++|.++..+.++ +.++..+++++.+++....    ......+ ..
T Consensus       421 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~-~~  498 (861)
T 2bpt_A          421 NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY-PA  498 (861)
T ss_dssp             GCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH-HH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH-HH
Confidence            677899999999999999875321  12334678889999999775 9999999999999875421    1111122 25


Q ss_pred             cHHHHHHhcCCCC--ccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhcc--------------CchHHHHHHHH
Q 043676          215 VCPRLVELLGHPS--PSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVH--------------NHEEIIKKEIS  278 (446)
Q Consensus       215 ~~~~l~~ll~~~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~--------------~~~~~v~~~a~  278 (446)
                      +++.+...+.+.+  +.++..++.+++.++...+......+. .+++.++..+..              .....++..++
T Consensus       499 il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~  577 (861)
T 2bpt_A          499 LVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNIL  577 (861)
T ss_dssp             HHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHH
Confidence            6788888888544  688999999999998766544433332 255666666542              11446788899


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCc-chHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHH
Q 043676          279 WIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEF-DTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPE  357 (446)
Q Consensus       279 ~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~  357 (446)
                      .++.+++............ .+++.+...+++.+. .++..++.++..++.....+...++-.  +++.+...+++++++
T Consensus       578 ~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~--i~~~l~~~l~~~~~~  654 (861)
T 2bpt_A          578 TVLAAVIRKSPSSVEPVAD-MLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET--FSPYLLKALNQVDSP  654 (861)
T ss_dssp             HHHHHHHHHCGGGTGGGHH-HHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHHCTTSH
T ss_pred             HHHHHHHHHhhhhhHHHHH-HHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHhccccHH
Confidence            9999998643322222222 477788888888777 899999999999876433333334333  788888888888899


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q 043676          358 IVTVCLIGLENILKVGEA  375 (446)
Q Consensus       358 ~~~~~~~~l~~l~~~~~~  375 (446)
                      ++..+++++..++...+.
T Consensus       655 vr~~a~~~l~~l~~~~~~  672 (861)
T 2bpt_A          655 VSITAVGFIADISNSLEE  672 (861)
T ss_dssp             HHHHHHHHHHHHHHHTGG
T ss_pred             HHHHHHHHHHHHHHHhch
Confidence            999999999998876543

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.68  E-value=3.8e-15  Score=151.31  Aligned_cols=400  Identities=10%  Similarity=0.104  Sum_probs=263.7

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhh--H
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSEN--T   81 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~--~   81 (446)
                      +|.+.+.+.+.++..+..|++++..++.+........... .+++.++..+.+++ +.+|..++++++.++......  .
T Consensus       371 ~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~  448 (861)
T 2bpt_A          371 LEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESIDP  448 (861)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSCT
T ss_pred             HHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcCC
Confidence            3555667778899999999999999886531122222222 47888999999888 899999999999998621110  0


Q ss_pred             HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-----hHHHHHHHHcCChHHHHHHhcc-ccchhHHHHHHHHH
Q 043676           82 NVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDS-----PRCRDLVLSQGALIPLLAELNE-HAKLSMLRNATRTL  155 (446)
Q Consensus        82 ~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~-----~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~~a~~~L  155 (446)
                      ... -..+++.++..+.++ +.++..+++++.+++...     ......+  ..+++.++..+.. +.++.++..++.++
T Consensus       449 ~~~-~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al  524 (861)
T 2bpt_A          449 QQH-LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSAL  524 (861)
T ss_dssp             TTT-HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHH
Confidence            000 123467888888776 999999999999988421     1111111  1235677777742 23478999999999


Q ss_pred             HHhhcCCCCCChhhhhhhHHHHHHhhcCC---------------CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHH
Q 043676          156 SNFCRGKPEPPFDQVRPALPALAQLVHSN---------------DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLV  220 (446)
Q Consensus       156 ~~l~~~~~~~~~~~~~~~~~~l~~ll~~~---------------~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~  220 (446)
                      ..++...+.........++|.++..+...               ...++..++.++..++...+........ .+++.+.
T Consensus       525 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~  603 (861)
T 2bpt_A          525 TTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFF  603 (861)
T ss_dssp             HHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHH
T ss_pred             HHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHH
Confidence            99988765433334456677777666521               3567888999999888654432222222 5677788


Q ss_pred             HhcCCCCc-cchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 043676          221 ELLGHPSP-SVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAG  299 (446)
Q Consensus       221 ~ll~~~~~-~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~  299 (446)
                      ..+.+.+. .++..++.+++.++..........+. .+++.+...+.++ ++.++..++.+++.++........... ..
T Consensus       604 ~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~  680 (861)
T 2bpt_A          604 RLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYS-DA  680 (861)
T ss_dssp             HHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHH-HH
T ss_pred             HHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchH-HH
Confidence            88887766 89999999999998654443333332 3788888888776 788999999999998763222222222 25


Q ss_pred             ChHHHHHHHhcCC--cchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCC-----------HHHHHHHHHHH
Q 043676          300 LIRPIVNLLQNAE--FDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSD-----------PEIVTVCLIGL  366 (446)
Q Consensus       300 ~i~~L~~ll~~~~--~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~-----------~~~~~~~~~~l  366 (446)
                      +++.+++.+.+.+  +.++..++.+++.++.........++-  .+++.+...++...           ..++..+++++
T Consensus       681 l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~--~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~  758 (861)
T 2bpt_A          681 MMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN--DIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAY  758 (861)
T ss_dssp             HHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHH
Confidence            7888888888764  889999999999998754333333332  25777777776421           35788888888


Q ss_pred             HHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCC----CHHHHHHHHHHHHHhcC
Q 043676          367 ENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHD----NNEIHEKSVKIFKTYWC  426 (446)
Q Consensus       367 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~----~~~v~~~a~~~l~~~~~  426 (446)
                      ..++........      ...++...     .++.+.....+.    +..++..|..++..+..
T Consensus       759 ~~i~~~l~~~~~------~~~~~~~~-----i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~  811 (861)
T 2bpt_A          759 VGIVAGLHDKPE------ALFPYVGT-----IFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAA  811 (861)
T ss_dssp             HHHHHHTTTCHH------HHGGGHHH-----HHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHH------HHHHHHHH-----HHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHH
Confidence            888754331000      01111111     234444444442    78899999999888754

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.68  E-value=3.5e-15  Score=151.92  Aligned_cols=393  Identities=15%  Similarity=0.166  Sum_probs=251.5

Q ss_pred             hHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCCCCcH-HHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhh
Q 043676            4 FPALVAGVWSD--DNSLQLEATTLSRKLLSFDRNPPI-EKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSEN   80 (446)
Q Consensus         4 i~~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~   80 (446)
                      ++.+.+.+.++  ++.+|..|++++..++..- .... .......+++.+.+.+.+++ ++++..++.+|..++...++.
T Consensus       174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~  251 (876)
T 1qgr_A          174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFT-KANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQY  251 (876)
T ss_dssp             HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC-HHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHHH
Confidence            45677778776  6899999999999877542 1110 01111236777778887777 899999999999999755554


Q ss_pred             HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChH----------------------HHHHHHHcCChHHHHHH
Q 043676           81 TNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPR----------------------CRDLVLSQGALIPLLAE  138 (446)
Q Consensus        81 ~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~----------------------~~~~~~~~~~i~~l~~~  138 (446)
                      ....+...+++.++..+.+.++.++..++.++..++.....                      .+..+  ...++.++..
T Consensus       252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ll~~ll~~  329 (876)
T 1qgr_A          252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL--QYLVPILTQT  329 (876)
T ss_dssp             CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH--HHHhHHHHHH
Confidence            44444446788888888888999999999999988743110                      00011  1235566666


Q ss_pred             hcc------ccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCc-HHHHHHH
Q 043676          139 LNE------HAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTN-DKIQAVI  211 (446)
Q Consensus       139 l~~------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~-~~~~~~~  211 (446)
                      +..      +.+..++..+..++..++...+.   .....+++.+...+.+.++.+|..++++++.++.... +......
T Consensus       330 l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~  406 (876)
T 1qgr_A          330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV  406 (876)
T ss_dssp             TTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH
T ss_pred             hhcccccccccccHHHHHHHHHHHHHHHHCcH---hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            632      23467888999999988876431   2356778888888888999999999999999998755 3333333


Q ss_pred             HhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhh--HHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCH
Q 043676          212 EAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQT--QCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNR  289 (446)
Q Consensus       212 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~  289 (446)
                       ..+++.++..+.++++.+|..|++++++++...+...  ... -..+++.++..+.+.  +.++..+++++++++....
T Consensus       407 -~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~  482 (876)
T 1qgr_A          407 -IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGLSAE--PRVASNVCWAFSSLAEAAY  482 (876)
T ss_dssp             -HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhh
Confidence             3688999999999999999999999999987543311  011 123567777888654  7789999999999975311


Q ss_pred             --------------HHHHHHHHcCChHHHHHHHhcC---CcchHHHHHHHHHHhcc------------------------
Q 043676          290 --------------EQIQAVIDAGLIRPIVNLLQNA---EFDTKKEAAWAISNATS------------------------  328 (446)
Q Consensus       290 --------------~~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~~l~~------------------------  328 (446)
                                    ....... ..+++.|...+...   +..++..+..++..++.                        
T Consensus       483 ~~~~~~~~~~~~~~~~l~~~~-~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~  561 (876)
T 1qgr_A          483 EAADVADDQEEPATYCLSSSF-ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQV  561 (876)
T ss_dssp             HTTSCTTSCCCCCCCSSTTTH-HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred             hccccccccccccchhhhHhH-HHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHH
Confidence                          0011111 13556666666543   23555555555555433                        


Q ss_pred             --------------------------------CCC-HHHHHHHHHcCChHHHHhcccCCC--HHHHHHHHHHHHHHHHhh
Q 043676          329 --------------------------------GGT-QEQIKHLVREGCVKPLCDLLLCSD--PEIVTVCLIGLENILKVG  373 (446)
Q Consensus       329 --------------------------------~~~-~~~~~~l~~~~~i~~L~~ll~~~~--~~~~~~~~~~l~~l~~~~  373 (446)
                                                      ... .....++  ..+++.+..++++.+  +.++..++.++..++...
T Consensus       562 ~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~  639 (876)
T 1qgr_A          562 LQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS--DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVL  639 (876)
T ss_dssp             HTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH--HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH--HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHH
Confidence                                            211 1111111  124566667776654  478889999999988754


Q ss_pred             hhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCC-CHHHHHHHHHHHHHh
Q 043676          374 EAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHD-NNEIHEKSVKIFKTY  424 (446)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~~  424 (446)
                      +..-         .++...     .++.+.....+. +++++..|.+.+..+
T Consensus       640 ~~~~---------~~~~~~-----~~~~l~~~l~~~~~~~vr~~a~~~l~~l  677 (876)
T 1qgr_A          640 GGEF---------LKYMEA-----FKPFLGIGLKNYAEYQVCLAAVGLVGDL  677 (876)
T ss_dssp             GGGG---------GGGHHH-----HHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred             HhhH---------HHHHHH-----HHHHHHHHHcCcchHHHHHHHHHHHHHH
Confidence            3321         112222     244444444443 677777776665544

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.66  E-value=1.7e-15  Score=142.55  Aligned_cols=389  Identities=11%  Similarity=0.073  Sum_probs=265.6

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCC-ChHHHHHHHHHHHHHcCCChhhHH
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRED-YPQLQYEAAWVLINIASGTSENTN   82 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~   82 (446)
                      +..+++.+.++|..+|..|-..|.++...+         ..++...|..++.+++ ++.+|..|+..|.++.........
T Consensus         3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~   73 (462)
T 1ibr_B            3 LITILEKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK   73 (462)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHH
Confidence            456677778899999999999998754310         1245677778777652 479999999999999763311110


Q ss_pred             H-----------HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hHHHHHHHHcCChHHHHHHhcccc--chhHH
Q 043676           83 V-----------VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAELNEHA--KLSML  148 (446)
Q Consensus        83 ~-----------~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~--~~~~~  148 (446)
                      .           -....+-..++..+.++++.+ ..++.+++.++... +..    .-.+.++.++..+ .+.  ++.++
T Consensus        74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~----~w~~ll~~L~~~l-~~~~~~~~~r  147 (462)
T 1ibr_B           74 AQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN----QWPELIPQLVANV-TNPNSTEHMK  147 (462)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT----CCTTHHHHHHHHH-HCTTCCHHHH
T ss_pred             HHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc----ccHHHHHHHHHHh-ccCCCCHHHH
Confidence            0           011123355777788877778 88888998888331 110    0124577888888 455  88999


Q ss_pred             HHHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhcCC--CHhHHHHHHHHHHHhccCCcHHHH-HHHHhCcHHHHHHhcC
Q 043676          149 RNATRTLSNFCRGK-PEPPFDQVRPALPALAQLVHSN--DEDVLTYACWSLSYLADGTNDKIQ-AVIEAGVCPRLVELLG  224 (446)
Q Consensus       149 ~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~--~~~v~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~l~~ll~  224 (446)
                      ..++.+|..++... +.........+++.+...+.+.  ++.+|..++.+++++...-.+... .....-+++.+...+.
T Consensus       148 ~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  227 (462)
T 1ibr_B          148 ESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ  227 (462)
T ss_dssp             HHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Confidence            99999999999754 2222333467888899999887  799999999999987643221110 0111124667777788


Q ss_pred             CCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHH----------
Q 043676          225 HPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQA----------  294 (446)
Q Consensus       225 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~----------  294 (446)
                      ++++.++..++.++..++...+......+...+++.++..+++. ++.++..++..+..++..... ...          
T Consensus       228 ~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~  305 (462)
T 1ibr_B          228 CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMD-LAIEASEAAEQGR  305 (462)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHH-HHHHHCCTTCSSS
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHH-HHHhcccccccCC
Confidence            88899999999999999876554332222225677778888887 889999999999888653110 000          


Q ss_pred             --------HHH---cCChHHHHHHHhc-------CCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCH
Q 043676          295 --------VID---AGLIRPIVNLLQN-------AEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDP  356 (446)
Q Consensus       295 --------~~~---~~~i~~L~~ll~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~  356 (446)
                              +.+   ..++|.+++.+..       .++.++..|..+|..++.........     .+++.+...+.++++
T Consensus       306 ~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~-----~~~~~l~~~l~~~~~  380 (462)
T 1ibr_B          306 PPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP-----HVLPFIKEHIKNPDW  380 (462)
T ss_dssp             CSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH-----HHHHHHHHHTTCSSH
T ss_pred             CccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhcCCCh
Confidence                    111   2356667777743       24578999999999987754322222     257778888899999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 043676          357 EIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCG  427 (446)
Q Consensus       357 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  427 (446)
                      .++..++.++..+........           +...+  ...++.+..++.++++.++..|.+.+.++...
T Consensus       381 ~~r~aal~~l~~l~~~~~~~~-----------~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~  438 (462)
T 1ibr_B          381 RYRDAAVMAFGCILEGPEPSQ-----------LKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (462)
T ss_dssp             HHHHHHHHHHHHTSSSSCTTT-----------TCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCcHHH-----------HHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            999999999999876322110           01111  45677788888999999999999999998653

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.65  E-value=9.1e-15  Score=141.51  Aligned_cols=326  Identities=14%  Similarity=0.090  Sum_probs=236.9

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV   83 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   83 (446)
                      ++.+.+.+.+.++.+|..|+.++.++.... ++..     .++++.+.+++.+++ +.++..|+.+|..++..+++....
T Consensus       144 ~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p~~v-----~~~~~~l~~lL~D~d-~~V~~~Al~~L~~i~~~~~~~~~~  216 (618)
T 1w63_A          144 AGEVEKLLKTSNSYLRKKAALCAVHVIRKV-PELM-----EMFLPATKNLLNEKN-HGVLHTSVVLLTEMCERSPDMLAH  216 (618)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-GGGG-----GGGGGGTTTSTTCCC-HHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-hHHH-----HHHHHHHHHHhCCCC-HhHHHHHHHHHHHHHHhChHHHHH
Confidence            577888999999999999999999998763 2221     267888889999888 999999999999999855553333


Q ss_pred             HHhcCChHHHHHhhCC---------------CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhc-----ccc
Q 043676           84 VIDHGAVPIFVKLLSS---------------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELN-----EHA  143 (446)
Q Consensus        84 ~~~~~~i~~L~~~L~~---------------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~-----~~~  143 (446)
                      +.  ..++.++..|.+               +++-.+..++.+++.++...+....     ...+.+..++.     ++.
T Consensus       217 ~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~  289 (618)
T 1w63_A          217 FR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNV  289 (618)
T ss_dssp             HH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTH
T ss_pred             HH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccch
Confidence            32  567777776652               4788889999999999977665332     23445555542     223


Q ss_pred             chhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc
Q 043676          144 KLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELL  223 (446)
Q Consensus       144 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll  223 (446)
                      +..+...+++++..+...     ......+++.+..++.+.++.++..++.+|..++...+....     .....++.++
T Consensus       290 ~~aV~~ea~~~i~~l~~~-----~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~-----~~~~~i~~~l  359 (618)
T 1w63_A          290 GNAILYETVLTIMDIKSE-----SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQ-----RHRSTIVDCL  359 (618)
T ss_dssp             HHHHHHHHHHHHHHSCCC-----HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHG-----GGHHHHHHGG
T ss_pred             HHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHH-----HHHHHHHHHc
Confidence            567888899998887432     122235778889999999999999999999999876443222     5667889999


Q ss_pred             CCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH
Q 043676          224 GHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRP  303 (446)
Q Consensus       224 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~  303 (446)
                      .+++..+|..|+.++..++....  ...     +++.+...+.+. +.++|..++.+++.++...+....     ..++.
T Consensus       360 ~d~d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~-d~e~r~~~v~~I~~la~k~~~~~~-----~~v~~  426 (618)
T 1w63_A          360 KDLDVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSC-EPEFKADCASGIFLAAEKYAPSKR-----WHIDT  426 (618)
T ss_dssp             GSSCHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHC-CHHHHHHHHHHHHHHHHSSCCCHH-----HHHHH
T ss_pred             cCCChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHhCccHH-----HHHHH
Confidence            99999999999999999987432  222     357788888877 899999999999999874221111     24678


Q ss_pred             HHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccC--CCHHHHHHHHHHHHHHHHh
Q 043676          304 IVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC--SDPEIVTVCLIGLENILKV  372 (446)
Q Consensus       304 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~~~~~~~~~l~~l~~~  372 (446)
                      +++++......++..+...+..+.... ++....     ++..|++.+.+  ....+...++|+|+.+...
T Consensus       427 ll~lL~~~~~~v~~~~~~~l~~ii~~~-p~l~~~-----~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~  491 (618)
T 1w63_A          427 IMRVLTTAGSYVRDDAVPNLIQLITNS-VEMHAY-----TVQRLYKAILGDYSQQPLVQVAAWCIGEYGDL  491 (618)
T ss_dssp             HHHHHHHTGGGSCSSHHHHHHHHHHHS-CSTHHH-----HHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccchhHHHHHHHHHHHHhcC-hhHHHH-----HHHHHHHHHhcccccHHHHHHHHHHHhhhHHH
Confidence            888888777677777777787776542 222222     35566666653  3345556789999988653

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.64  E-value=1.5e-14  Score=147.28  Aligned_cols=406  Identities=14%  Similarity=0.160  Sum_probs=259.0

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhh---
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSEN---   80 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~---   80 (446)
                      +|.+.+.+.+.++.+|..+++++..++.+...+...... ..++|.++..+.+++ +.+|..|++++++++...+..   
T Consensus       368 l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~~  445 (876)
T 1qgr_A          368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEAAIN  445 (876)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCGGGTSS
T ss_pred             HHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCchhccc
Confidence            456667788899999999999999987753111222222 357899999999888 899999999999999743321   


Q ss_pred             HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh---------------HHHHHHHHcCChHHHHHHhcccc--
Q 043676           81 TNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP---------------RCRDLVLSQGALIPLLAELNEHA--  143 (446)
Q Consensus        81 ~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~---------------~~~~~~~~~~~i~~l~~~l~~~~--  143 (446)
                      ...+  ..+++.++..+.++ +.++..+++++.+++....               .....+  ..+++.++..+....  
T Consensus       446 ~~~l--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~~  520 (876)
T 1qgr_A          446 DVYL--APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDGH  520 (876)
T ss_dssp             TTTH--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSSC
T ss_pred             HHHH--HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCcc
Confidence            1111  24567888888775 8999999999999984211               000111  124566666664322  


Q ss_pred             chhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcC-----------CC----HhHHHHHHHHHHHhccCCc-HHH
Q 043676          144 KLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHS-----------ND----EDVLTYACWSLSYLADGTN-DKI  207 (446)
Q Consensus       144 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~-----------~~----~~v~~~~~~~l~~l~~~~~-~~~  207 (446)
                      +..++..+..++..++...+..........++.++..+..           .+    ++++..++.++..++.... ...
T Consensus       521 ~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~  600 (876)
T 1qgr_A          521 QNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDA  600 (876)
T ss_dssp             STTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhh
Confidence            3578888999999998876544444456677777666542           22    4567888999999987665 443


Q ss_pred             HHHHHhCcHHHHHHhcCCCC--ccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHh
Q 043676          208 QAVIEAGVCPRLVELLGHPS--PSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNIT  285 (446)
Q Consensus       208 ~~~~~~~~~~~l~~ll~~~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~  285 (446)
                      .... ..+++.++.++++.+  +.++..++.+++.++..........+. .+++.+...+.+..++.+|..++++++.++
T Consensus       601 ~~~~-~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~  678 (876)
T 1qgr_A          601 LQIS-DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLC  678 (876)
T ss_dssp             HTTH-HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred             hHHH-HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence            3222 367788888888764  468899999999998643322222222 266778888876536789999999999997


Q ss_pred             cCCHHHHHHHHHcCChHHHHHHHhc--CCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCC----C----
Q 043676          286 AGNREQIQAVIDAGLIRPIVNLLQN--AEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCS----D----  355 (446)
Q Consensus       286 ~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~----~----  355 (446)
                      ............ .+++.+++.+.+  .+.+++..+++++++++....++...++  ..+++.+.+.++.+    +    
T Consensus       679 ~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l--~~~~~~l~~~~~~~~~~~d~~~~  755 (876)
T 1qgr_A          679 RALQSNIIPFCD-EVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYL--EVVLNTLQQASQAQVDKSDYDMV  755 (876)
T ss_dssp             HHHGGGGHHHHH-HHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHTCCCCTTCHHHH
T ss_pred             HHHHHhhhhhHH-HHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHhccCCCCChHHH
Confidence            632222222222 578888888887  3578999999999999763322322222  12456666666543    1    


Q ss_pred             ---HHHHHHHHHHHHHHHHhhhhhhcc-cCCCCccchHHHHHHHhChHHHHHHhhcCC--CHHHHHHHHHHHHHhcC
Q 043676          356 ---PEIVTVCLIGLENILKVGEAERNM-GTTIGDVNQYAQFVEEAGGLEKIENLQSHD--NNEIHEKSVKIFKTYWC  426 (446)
Q Consensus       356 ---~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~--~~~v~~~a~~~l~~~~~  426 (446)
                         ..++..++.++..++......... ........+|...+     ++.+..+..++  +..++..|..++..+..
T Consensus       756 ~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~  827 (876)
T 1qgr_A          756 DYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFI-----LSFIDHIAGDEDHTDGVVACAAGLIGDLCT  827 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHH-----HHHHHHHHTCSCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence               268888888888887654321000 00000112232222     23444454555  67899888888887654

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.63  E-value=3.4e-14  Score=149.44  Aligned_cols=406  Identities=12%  Similarity=0.109  Sum_probs=265.8

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV   83 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   83 (446)
                      ++.+++.+.+.|+++|..|...|.+..... ......-....+++.+++.+.+++ +.+|..|+.+|++++...++.  .
T Consensus         8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~-~~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~~--~   83 (1230)
T 1u6g_C            8 ISNLLEKMTSSDKDFRFMATNDLMTELQKD-SIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY--Q   83 (1230)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH--H
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHHHHccc-ccCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCHH--H
Confidence            678899999999999999999998876543 111111112246788889998887 899999999999998744331  1


Q ss_pred             HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHH------HHHHHHcCChHHHHHHhccccchhHHHHHHHHHHH
Q 043676           84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRC------RDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSN  157 (446)
Q Consensus        84 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~------~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  157 (446)
                      +  ..+++.++..+.++++.+|..++.+++.++...+..      ... .-...++.++..+.++.+..++..++.++..
T Consensus        84 ~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~-~~~~llp~L~~~l~~~~~~~~~~~al~~l~~  160 (1230)
T 1u6g_C           84 V--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIAKQEDVSVQLEALDIMAD  160 (1230)
T ss_dssp             H--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred             H--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHH-HHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence            1  235788888888988999999999999988433211      011 1123578888888435778999999999999


Q ss_pred             hhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC-CccchhHHHH
Q 043676          158 FCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHP-SPSVLTPALR  236 (446)
Q Consensus       158 l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~~~~~a~~  236 (446)
                      ++...+..-......+++.+...+.++++.+|..++.+++.++...++.   ++ ..+++.++..+.+. ++.++..++.
T Consensus       161 ~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~~-~~~l~~l~~~L~~~~~~~~r~~a~~  236 (1230)
T 1u6g_C          161 MLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYIQ  236 (1230)
T ss_dssp             HHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHHHhccCCchhHHHHHHH
Confidence            9865432222345778888999999999999999999999999765432   12 24577777777654 3578888999


Q ss_pred             HHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-------
Q 043676          237 TVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQ-------  309 (446)
Q Consensus       237 ~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~-------  309 (446)
                      +++.++...+...... -..+++.++..+.+. ++.+|..++.++..++...++....... .+++.+++.+.       
T Consensus       237 ~l~~l~~~~~~~~~~~-l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~~  313 (1230)
T 1u6g_C          237 CIAAISRQAGHRIGEY-LEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNY  313 (1230)
T ss_dssp             HHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC-----
T ss_pred             HHHHHHHHhHHHHHHH-HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCCCC
Confidence            9999987544322211 235788899999887 8889999999999987632221111111 23333333221       


Q ss_pred             ------------------------------cCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHH
Q 043676          310 ------------------------------NAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIV  359 (446)
Q Consensus       310 ------------------------------~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~  359 (446)
                                                    +..+.+|..|+.++..++.... +....+. ..+++.+...+.+.++.++
T Consensus       314 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~-~~~~~~~-~~l~~~l~~~l~d~~~~Vr  391 (1230)
T 1u6g_C          314 DDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH-EMLPEFY-KTVSPALISRFKEREENVK  391 (1230)
T ss_dssp             -------------------------------CTTHHHHHHHHHHHHHHTTCC-TTHHHHH-TTTHHHHHSTTSCSSSHHH
T ss_pred             cccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhch-hHHHHHH-HHHHHHHHHHcCCCchHHH
Confidence                                          1124578999999999887433 2222222 3478889999988999999


Q ss_pred             HHHHHHHHHHHHhhhhhhccc---CCCC---ccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 043676          360 TVCLIGLENILKVGEAERNMG---TTIG---DVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWC  426 (446)
Q Consensus       360 ~~~~~~l~~l~~~~~~~~~~~---~~~~---~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  426 (446)
                      ..++.++..++..........   ....   ........+. ...++.+.....++++.++..+...+..+..
T Consensus       392 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~  463 (1230)
T 1u6g_C          392 ADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVN  463 (1230)
T ss_dssp             HHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence            999999988876432100000   0000   0000000010 1224445555777788887777777766643

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.62  E-value=9.3e-16  Score=144.33  Aligned_cols=357  Identities=14%  Similarity=0.126  Sum_probs=241.0

Q ss_pred             HHHHHhhcCC--CHHHHHHHHHHHHHHhcCCCCCcH-----------HHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHH
Q 043676            5 PALVAGVWSD--DNSLQLEATTLSRKLLSFDRNPPI-----------EKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLI   71 (446)
Q Consensus         5 ~~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~-----------~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~   71 (446)
                      +.|++.+.++  ++.+|..|+..|.++.... ....           ..-....+-..++..+.+++ +.+ ..++.+++
T Consensus        38 ~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~-~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~~~i~  114 (462)
T 1ibr_B           38 VELSRVLANPGNSQVARVAAGLQIKNSLTSK-DPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQCVA  114 (462)
T ss_dssp             HHHHHHHHCTTSCHHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHHHHH
T ss_pred             HHHHHHHHcCCCChHHHHHHHHHHHHhcccc-chHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHHHHHH
Confidence            3456666654  6899999999999987642 1000           00112234456777888877 678 88999999


Q ss_pred             HHcCCC-hhhHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCC-hHHHHHHHHcCChHHHHHHhcccc-chh
Q 043676           72 NIASGT-SENTNVVIDHGAVPIFVKLLSSP--SDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAELNEHA-KLS  146 (446)
Q Consensus        72 ~l~~~~-~~~~~~~~~~~~i~~L~~~L~~~--~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~-~~~  146 (446)
                      .++... ++.    .-.+.++.|+..+.++  ++.+++.++.++..++... +..-.... ...++.++..+.... +..
T Consensus       115 ~ia~~~~~~~----~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~  189 (462)
T 1ibr_B          115 GIACAEIPVN----QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNN  189 (462)
T ss_dssp             HHHHHHGGGT----CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHH
T ss_pred             HHHHHhcccc----ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHH
Confidence            998732 210    0136788899999888  8999999999999998532 21100111 124667778884332 789


Q ss_pred             HHHHHHHHHHHhhcCCC-C-CChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC
Q 043676          147 MLRNATRTLSNFCRGKP-E-PPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLG  224 (446)
Q Consensus       147 ~~~~a~~~L~~l~~~~~-~-~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~  224 (446)
                      ++..+++++.++..... . ........+++.+...+.+.++.++..++.++..++...+......+..++++.++..+.
T Consensus       190 vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~  269 (462)
T 1ibr_B          190 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK  269 (462)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999998764321 0 011111234677777788889999999999999998665533222222266777777888


Q ss_pred             CCCccchhHHHHHHHHhhcCCc---------------------hhhHHHHhcCChHHHHHHhccC------chHHHHHHH
Q 043676          225 HPSPSVLTPALRTVGNIVTGDD---------------------FQTQCIINHGAVPYLLDMLVHN------HEEIIKKEI  277 (446)
Q Consensus       225 ~~~~~~~~~a~~~l~~l~~~~~---------------------~~~~~~~~~~~~~~l~~~l~~~------~~~~v~~~a  277 (446)
                      +.++.++..|+..+..++....                     ...+..+ ..+++.++..+...      .+..+|..|
T Consensus       270 ~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a  348 (462)
T 1ibr_B          270 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAA  348 (462)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHH
Confidence            8889999999999988875320                     0111011 23556666666432      145789999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHH
Q 043676          278 SWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPE  357 (446)
Q Consensus       278 ~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~  357 (446)
                      +.+|..++...++   .+.. .+++.+...+.+.++.+|..|+.+++.++.+..++...... ..+++.+...+.++++.
T Consensus       349 ~~~L~~l~~~~~~---~~~~-~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~  423 (462)
T 1ibr_B          349 GVCLMLLATCCED---DIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVV  423 (462)
T ss_dssp             HHHHHHHHHHTTT---THHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHH
T ss_pred             HHHHHHHHHhccH---HHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHH
Confidence            9999999763222   1221 46777778888889999999999999999764422211111 45789999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q 043676          358 IVTVCLIGLENILKVGEA  375 (446)
Q Consensus       358 ~~~~~~~~l~~l~~~~~~  375 (446)
                      ++..|+++|.++......
T Consensus       424 Vr~~a~~~l~~~~~~~~~  441 (462)
T 1ibr_B          424 VRDTAAWTVGRICELLPE  441 (462)
T ss_dssp             HHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHhccc
Confidence            999999999999876544

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.60  E-value=3.9e-14  Score=148.91  Aligned_cols=396  Identities=13%  Similarity=0.142  Sum_probs=257.1

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCc----HHHHHhcCCHHHHHHhhc-CCCChHHHHHHHHHHHHHcCCCh
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPP----IEKVIQSGVVPRFVEFLM-REDYPQLQYEAAWVLINIASGTS   78 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~----~~~~~~~~~~~~L~~ll~-~~~~~~~~~~a~~~L~~l~~~~~   78 (446)
                      ++.+++.+.++++.+|..++.+|..++.......    ...-.-..++|.|++.+. +++ +.++..|+.++..++...+
T Consensus        88 ~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~~~  166 (1230)
T 1u6g_C           88 VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSRQG  166 (1230)
T ss_dssp             HHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHhH
Confidence            4567777777778888888888887776532210    011122357899999998 466 8999999999999884211


Q ss_pred             hhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHh
Q 043676           79 ENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNF  158 (446)
Q Consensus        79 ~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l  158 (446)
                      ...... -...++.+...+.++++.+|..|+.+++.++...+.   .+ -...++.++..+....+...+..++.++..+
T Consensus       167 ~~l~~~-~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l  241 (1230)
T 1u6g_C          167 GLLVNF-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAI  241 (1230)
T ss_dssp             SSCTTT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHH
T ss_pred             hHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence            111000 123567788888889999999999999999965442   11 2234778888885444456778888999888


Q ss_pred             hcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-------------
Q 043676          159 CRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH-------------  225 (446)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-------------  225 (446)
                      +...+..-......++|.+...+.+.++++|..++.++..++...+....... ..+++.++..+..             
T Consensus       242 ~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~~  320 (1230)
T 1u6g_C          242 SRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDEDE  320 (1230)
T ss_dssp             HHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC------------
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCccccccc
Confidence            87643322234478899999999988999999999999998865443222222 2445555554431             


Q ss_pred             ------------------------CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHH
Q 043676          226 ------------------------PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWII  281 (446)
Q Consensus       226 ------------------------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l  281 (446)
                                              ..+.+|..|+.++..++...+......+ ..+++.+...+.+. +..+|..++.++
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~~l  398 (1230)
T 1u6g_C          321 NAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHAY  398 (1230)
T ss_dssp             ------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHHH
T ss_pred             ccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHHHH
Confidence                                    1234688899999999875554333333 45778888888777 889999999988


Q ss_pred             HHHhcC--C-----------------HHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcC
Q 043676          282 SNITAG--N-----------------REQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREG  342 (446)
Q Consensus       282 ~~l~~~--~-----------------~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~  342 (446)
                      ..++..  .                 ......++ ..+++.+.+.+++.++.+|..++.+++.++.........++  ..
T Consensus       399 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l--~~  475 (1230)
T 1u6g_C          399 LSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI--PV  475 (1230)
T ss_dssp             HHHHHHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH--HH
T ss_pred             HHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH--HH
Confidence            887641  1                 11111122 23566677778888999999999999988764321111111  12


Q ss_pred             ChHHHHhcccCCCH--HHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHH
Q 043676          343 CVKPLCDLLLCSDP--EIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKI  420 (446)
Q Consensus       343 ~i~~L~~ll~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~  420 (446)
                      +++.+...+.+..+  .++..++..+..++.......           +...+  ...++.+.....+.+..++..|..+
T Consensus       476 ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~-----------~~~~l--~~llp~L~~~l~d~~~~v~~~al~~  542 (1230)
T 1u6g_C          476 LVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQV-----------FHPHV--QALVPPVVACVGDPFYKITSEALLV  542 (1230)
T ss_dssp             HHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGG-----------GHHHH--TTTHHHHHHHHTCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHH-----------HHhHH--HHHHHHHHHHHcccchHHHHHHHHH
Confidence            57788888887764  888888988888876332211           12222  2345555555566666665555555


Q ss_pred             HHHh
Q 043676          421 FKTY  424 (446)
Q Consensus       421 l~~~  424 (446)
                      +..+
T Consensus       543 l~~l  546 (1230)
T 1u6g_C          543 TQQL  546 (1230)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5544

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.53  E-value=4.4e-13  Score=111.59  Aligned_cols=187  Identities=19%  Similarity=0.156  Sum_probs=156.0

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676            3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN   82 (446)
Q Consensus         3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~   82 (446)
                      .++.|++.|+++++.++..+++.|..+..            .+.++.|++++.+++ +.++..|+++|+.+..       
T Consensus        20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~~-~~vr~~a~~aL~~~~~-------   79 (211)
T 3ltm_A           20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDED-AWVRRAAADALGQIGD-------   79 (211)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-------
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC-------
Confidence            57899999999999999999999987532            256899999999988 8999999999999864       


Q ss_pred             HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 043676           83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK  162 (446)
Q Consensus        83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  162 (446)
                          .+.++.|..+|.++++.+|..++++|+.+..           ...++.++..+ .++++.++..++++|..+..  
T Consensus        80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~--  141 (211)
T 3ltm_A           80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKAL-KDEDWFVRIAAAFALGEIGD--  141 (211)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC--
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCC--
Confidence                2468899999999999999999999999863           13567888888 78899999999999999843  


Q ss_pred             CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhh
Q 043676          163 PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIV  242 (446)
Q Consensus       163 ~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~  242 (446)
                              ...++.|..++.++++.++..++.+|+.+..           ...++.|..++.++++.+|..|..+|.++.
T Consensus       142 --------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~  202 (211)
T 3ltm_A          142 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHK  202 (211)
T ss_dssp             --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred             --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence                    3578999999999999999999999999853           145677888888899999999999999987


Q ss_pred             cCCc
Q 043676          243 TGDD  246 (446)
Q Consensus       243 ~~~~  246 (446)
                      ....
T Consensus       203 ~~~~  206 (211)
T 3ltm_A          203 SFNH  206 (211)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            6543

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.51  E-value=7.3e-13  Score=109.35  Aligned_cols=184  Identities=20%  Similarity=0.161  Sum_probs=155.8

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676            3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN   82 (446)
Q Consensus         3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~   82 (446)
                      ..+.+++.|+++++.++..|++.|..+..            .+.++.|++++.+++ +.++..|+++|+.+..       
T Consensus        15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~~~~-~~vr~~a~~~L~~~~~-------   74 (201)
T 3ltj_A           15 KVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDED-AWVRRAAADALGQIGD-------   74 (201)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-------
T ss_pred             chHHHHHHhcCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC-------
Confidence            46789999999999999999999987532            146899999999888 8999999999999864       


Q ss_pred             HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 043676           83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK  162 (446)
Q Consensus        83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  162 (446)
                          ...++.|..+|.++++.+|..++++|+.+..  +         ..++.++..+ .++++.++..++++|..+..  
T Consensus        75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~--  136 (201)
T 3ltj_A           75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--E---------RAVEPLIKAL-KDEDWFVRIAAAFALGEIGD--  136 (201)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G---------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHTC--
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC--
Confidence                2468999999999999999999999999862  1         2567888888 78899999999999999853  


Q ss_pred             CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhh
Q 043676          163 PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIV  242 (446)
Q Consensus       163 ~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~  242 (446)
                              ...++.|..++.++++.++..++.+|+.+..  +         ..++.|..++.++++.++..|..+|..+.
T Consensus       137 --------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          137 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence                    4578999999999999999999999999842  1         35677888888899999999999998775


Q ss_pred             c
Q 043676          243 T  243 (446)
Q Consensus       243 ~  243 (446)
                      .
T Consensus       198 ~  198 (201)
T 3ltj_A          198 S  198 (201)
T ss_dssp             -
T ss_pred             h
Confidence            3

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.50  E-value=1.5e-12  Score=108.38  Aligned_cols=187  Identities=19%  Similarity=0.186  Sum_probs=157.7

Q ss_pred             cCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHH
Q 043676           44 SGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCR  123 (446)
Q Consensus        44 ~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~  123 (446)
                      .+.++.|++.|.+++ +.+|..|++.|+.+..           ...++.|+.++.++++.+|..++++|+.+..      
T Consensus        18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred             HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence            357999999999988 8999999999999865           2568999999999999999999999999862      


Q ss_pred             HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCC
Q 043676          124 DLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGT  203 (446)
Q Consensus       124 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~  203 (446)
                           .+.++.++..+ .++++.++..++++|..+..          ...++.|..++.++++.++..++.+|+.+..  
T Consensus        80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--  141 (211)
T 3ltm_A           80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--  141 (211)
T ss_dssp             -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred             -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence                 23567888888 78899999999999998853          3578999999999999999999999999853  


Q ss_pred             cHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHH
Q 043676          204 NDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISN  283 (446)
Q Consensus       204 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~  283 (446)
                               ...++.|..++.++++.++..|+.+|+.+..           ...++.|..++.++ ++.+|..|..+|.+
T Consensus       142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~  200 (211)
T 3ltm_A          142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLET  200 (211)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence                     1567889999999999999999999999853           12467788888888 89999999999999


Q ss_pred             HhcC
Q 043676          284 ITAG  287 (446)
Q Consensus       284 l~~~  287 (446)
                      +...
T Consensus       201 ~~~~  204 (211)
T 3ltm_A          201 HKSF  204 (211)
T ss_dssp             ----
T ss_pred             cCCC
Confidence            8653

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.48  E-value=2.5e-12  Score=106.08  Aligned_cols=184  Identities=20%  Similarity=0.196  Sum_probs=157.3

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHH
Q 043676           45 GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD  124 (446)
Q Consensus        45 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~  124 (446)
                      +..+.+++.|.+++ +.+|..|++.|+.+..           .+.++.|+.++.++++.+|..++++|+.+..  +    
T Consensus        14 ~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--~----   75 (201)
T 3ltj_A           14 EKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--E----   75 (201)
T ss_dssp             HHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G----
T ss_pred             cchHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H----
Confidence            46889999999999 8999999999998865           2468999999999999999999999998852  1    


Q ss_pred             HHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCc
Q 043676          125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTN  204 (446)
Q Consensus       125 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~  204 (446)
                           ..++.++..+ .++++.++..++++|..+..          ...++.+..++.++++.++..++++++.+..   
T Consensus        76 -----~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---  136 (201)
T 3ltj_A           76 -----RAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---  136 (201)
T ss_dssp             -----GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred             -----HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence                 3578888888 77899999999999998753          3578999999999999999999999998753   


Q ss_pred             HHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHH
Q 043676          205 DKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNI  284 (446)
Q Consensus       205 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l  284 (446)
                              .+.++.|..++.++++.++..|+.+|+.+..  +         ..++.+..++.++ ++.+|..|..+|.++
T Consensus       137 --------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~~l  196 (201)
T 3ltj_A          137 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETG-TGFARKVAVNYLETH  196 (201)
T ss_dssp             --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHC-CHHHHHHHHHHHHHC
T ss_pred             --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence                    2567889999999999999999999999842  1         2467788888888 899999999999987


Q ss_pred             h
Q 043676          285 T  285 (446)
Q Consensus       285 ~  285 (446)
                      .
T Consensus       197 ~  197 (201)
T 3ltj_A          197 K  197 (201)
T ss_dssp             C
T ss_pred             H
Confidence            3

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.47  E-value=4.4e-12  Score=122.32  Aligned_cols=365  Identities=11%  Similarity=0.113  Sum_probs=240.4

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhh--cCCCChHHHHHHHHHHHHHcCCChhhH
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFL--MREDYPQLQYEAAWVLINIASGTSENT   81 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll--~~~~~~~~~~~a~~~L~~l~~~~~~~~   81 (446)
                      +..+.+.++++|+.++-.|+.++.++..       ..+.+ .+++.+.+++  .+.+ +.+|..|+.++.++...+|+..
T Consensus       113 iN~l~kDl~~~n~~ir~lALr~L~~i~~-------~e~~~-~l~~~v~~~l~~~d~~-~~VRK~A~~al~kl~~~~p~~~  183 (621)
T 2vgl_A          113 NNAIKNDLASRNPTFMGLALHCIANVGS-------REMAE-AFAGEIPKILVAGDTM-DSVKQSAALCLLRLYRTSPDLV  183 (621)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHHHHCC-------HHHHH-HHTTHHHHHHHCSSSC-HHHHHHHHHHHHHHHHHCGGGC
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHhhccCC-------HHHHH-HHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhChhhc
Confidence            4567778889999999999999988733       12333 4678888888  7777 9999999999999988555433


Q ss_pred             HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhc----c--c----------cch
Q 043676           82 NVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELN----E--H----------AKL  145 (446)
Q Consensus        82 ~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~----~--~----------~~~  145 (446)
                      .   ..+.++.+.++|.++++.++..|+.++..++..++..     -...++.++..|.    .  .          +++
T Consensus       184 ~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~-----~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~  255 (621)
T 2vgl_A          184 P---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE-----FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAP  255 (621)
T ss_dssp             C---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH-----HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESH
T ss_pred             C---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH-----HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCc
Confidence            2   2478999999999999999999999999999766541     1123344444331    1  1          156


Q ss_pred             hHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhh---------cCCC--HhHHHHHHHHHHHhccCCcHHHHHHHHhC
Q 043676          146 SMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLV---------HSND--EDVLTYACWSLSYLADGTNDKIQAVIEAG  214 (446)
Q Consensus       146 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll---------~~~~--~~v~~~~~~~l~~l~~~~~~~~~~~~~~~  214 (446)
                      -.+...+..|..++...+........+.++.++..+         ++.+  ..+...+..++..+.. .++...     .
T Consensus       256 w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~  329 (621)
T 2vgl_A          256 WLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----R  329 (621)
T ss_dssp             HHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----H
T ss_pred             hHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----H
Confidence            677788887777764321111111223333333322         1122  3788888888888763 222222     4


Q ss_pred             cHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhc-cCchHHHHHHHHHHHHHHhcCCHHHHH
Q 043676          215 VCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLV-HNHEEIIKKEISWIISNITAGNREQIQ  293 (446)
Q Consensus       215 ~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~v~~~a~~~l~~l~~~~~~~~~  293 (446)
                      ++..|..++.+.++.++..++..+..++...+. . ..+ ......++..+. ++ +..+|..++.++..++.  +.+..
T Consensus       330 ~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~-~~~-~~~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~~--~~Nv~  403 (621)
T 2vgl_A          330 ACNQLGQFLQHRETNLRYLALESMCTLASSEFS-H-EAV-KTHIETVINALKTER-DVSVRQRAVDLLYAMCD--RSNAQ  403 (621)
T ss_dssp             HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-H-HHH-HTTHHHHHHHHTTCC-CHHHHHHHHHHHHHHCC--HHHHH
T ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-H-HHH-HHHHHHHHHHhccCC-CHhHHHHHHHHHHHHcC--hhhHH
Confidence            567788999889999999999999999976542 1 122 246678888888 77 89999999999999963  44444


Q ss_pred             HHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhh
Q 043676          294 AVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVG  373 (446)
Q Consensus       294 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~  373 (446)
                           .++..|...+...+.+.+..++.+++.++....+.. .     .++..|.+++......+...+...+..++...
T Consensus       404 -----~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~-~-----~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~  472 (621)
T 2vgl_A          404 -----QIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDY-T-----WYVDTILNLIRIAGDYVSEEVWYRVIQIVINR  472 (621)
T ss_dssp             -----HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSST-H-----HHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGG
T ss_pred             -----HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH-H-----HHHHHHHHHHHhhcccchHHHHHHHHHHHhCC
Confidence                 356678888888899999999999998875311111 1     14666777776544444444555555555443


Q ss_pred             hhhhcccCCCCccchHHHHHHHhChHHHH-HHhhcCC-CHHHHHHHHHHHHHhcC
Q 043676          374 EAERNMGTTIGDVNQYAQFVEEAGGLEKI-ENLQSHD-NNEIHEKSVKIFKTYWC  426 (446)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l-~~l~~~~-~~~v~~~a~~~l~~~~~  426 (446)
                      +..+             ...     +..+ +.+.... ...+.+.+.|++..|-+
T Consensus       473 ~~~~-------------~~~-----~~~l~~~l~~~~~~~~li~~~~wilGEy~~  509 (621)
T 2vgl_A          473 DDVQ-------------GYA-----AKTVFEALQAPACHENLVKVGGYILGEFGN  509 (621)
T ss_dssp             CSCH-------------HHH-----HHHHHHHHTSSSCCHHHHHHHHHHHHHHTH
T ss_pred             hhHH-------------HHH-----HHHHHHHHcCccchHHHHHHHHHHhcchHH
Confidence            3321             111     2222 2233222 34667788899998854

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.45  E-value=1.7e-10  Score=111.30  Aligned_cols=328  Identities=14%  Similarity=0.114  Sum_probs=233.9

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH
Q 043676            3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN   82 (446)
Q Consensus         3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~   82 (446)
                      .++..++.+.+.+...+..+.-++..++...  +  +.+.-  +++.+.+-+++++ +.++..|+++++++..  ++...
T Consensus        75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~--~--e~~~L--~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~~  145 (621)
T 2vgl_A           75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSN--S--ELIRL--INNAIKNDLASRN-PTFMGLALHCIANVGS--REMAE  145 (621)
T ss_dssp             CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC--H--HHHHH--HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHccCC--c--HHHHH--HHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHHH
Confidence            3567788899999999998888887765542  2  22211  3667777888999 9999999999999965  55443


Q ss_pred             HHHhcCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676           83 VVIDHGAVPIFVKLL--SSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR  160 (446)
Q Consensus        83 ~~~~~~~i~~L~~~L--~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  160 (446)
                      .     +++.+.+++  .+.++.+|..|+.++.++....|+.   +...+.++.+..+| .+.++.++.+++.++..++.
T Consensus       146 ~-----l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~  216 (621)
T 2vgl_A          146 A-----FAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLAQ  216 (621)
T ss_dssp             H-----HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHHH
T ss_pred             H-----HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHHH
Confidence            3     468889999  8899999999999999999765542   21236788888888 78899999999999999988


Q ss_pred             CCCCCChhhhhhhHHHHH----HhhcCC-------------CHhHHHHHHHHHHHhccCC-cHHHHHHHHhCcHHHHHHh
Q 043676          161 GKPEPPFDQVRPALPALA----QLVHSN-------------DEDVLTYACWSLSYLADGT-NDKIQAVIEAGVCPRLVEL  222 (446)
Q Consensus       161 ~~~~~~~~~~~~~~~~l~----~ll~~~-------------~~~v~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~l~~l  222 (446)
                      ..+.    .....+|.++    .++..+             ++..+..++..+..++... +.....+.  +.++.++..
T Consensus       217 ~~~~----~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~  290 (621)
T 2vgl_A          217 KNPE----EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNK  290 (621)
T ss_dssp             HCHH----HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHH
T ss_pred             hChH----HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHh
Confidence            6532    1223444444    443221             6889999999999988653 33333222  234444433


Q ss_pred             cCC-C----------CccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHH
Q 043676          223 LGH-P----------SPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQ  291 (446)
Q Consensus       223 l~~-~----------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~  291 (446)
                      +.+ +          ...+...|+.++..+.. .++...     .++..+..++.++ ++.+|..|+.++..++...+. 
T Consensus       291 ~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~-  362 (621)
T 2vgl_A          291 AQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS-  362 (621)
T ss_dssp             HHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT-
T ss_pred             hccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc-
Confidence            211 1          22667778888877753 332222     2567788888877 899999999999999875431 


Q ss_pred             HHHHHHcCChHHHHHHHh-cCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHH
Q 043676          292 IQAVIDAGLIRPIVNLLQ-NAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENIL  370 (446)
Q Consensus       292 ~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~  370 (446)
                      .. ++. .....++..+. +.|..++..++..|..++.   +.+...     ++..|.+.+.+.+.+++..++..+..+.
T Consensus       363 ~~-~~~-~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~---~~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la  432 (621)
T 2vgl_A          363 HE-AVK-THIETVINALKTERDVSVRQRAVDLLYAMCD---RSNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILA  432 (621)
T ss_dssp             HH-HHH-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC---HHHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HH-HHH-HHHHHHHHHhccCCCHhHHHHHHHHHHHHcC---hhhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            11 222 46778888888 8899999999999999974   455555     4566777887888999988888888876


Q ss_pred             Hh
Q 043676          371 KV  372 (446)
Q Consensus       371 ~~  372 (446)
                      ..
T Consensus       433 ~k  434 (621)
T 2vgl_A          433 EK  434 (621)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.33  E-value=3e-10  Score=86.37  Aligned_cols=217  Identities=14%  Similarity=0.185  Sum_probs=178.8

Q ss_pred             hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC
Q 043676           86 DHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEP  165 (446)
Q Consensus        86 ~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  165 (446)
                      +..+++.++.+|.+.-+.++.+|+..+.+++...|+..+.+     +..|+.++.++...+.......+++.++...|  
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P--  102 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP--  102 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH--
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCH--
Confidence            44678999999999999999999999999998888765554     45788888788888888889999999987653  


Q ss_pred             ChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCC
Q 043676          166 PFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGD  245 (446)
Q Consensus       166 ~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~  245 (446)
                        ....+.+|.+..-.+-++++++.....+|..++..+|....     +++.-+..++.+++..-+..|+..++.+....
T Consensus       103 --e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~  175 (253)
T 2db0_A          103 --ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS  175 (253)
T ss_dssp             --HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred             --HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence              35567788888888888999999999999999998886655     66677889999988888888999998888765


Q ss_pred             chhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHH
Q 043676          246 DFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISN  325 (446)
Q Consensus       246 ~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~  325 (446)
                      .....     -.+|.+..+|.+. +.-||..|+.+|.+++..++..+..      +..-+.=+++.+..++.....+|+.
T Consensus       176 ~~yv~-----PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~S~lv~~~V~egL~r  243 (253)
T 2db0_A          176 FKYVN-----PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDTSSLVNKTVKEGISR  243 (253)
T ss_dssp             HHHHG-----GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHHH
T ss_pred             ccccC-----cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            54433     4689999999999 9999999999999999888885543      3334555777788899999999988


Q ss_pred             hcc
Q 043676          326 ATS  328 (446)
Q Consensus       326 l~~  328 (446)
                      +..
T Consensus       244 l~l  246 (253)
T 2db0_A          244 LLL  246 (253)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=99.17  E-value=1.1e-09  Score=87.12  Aligned_cols=225  Identities=16%  Similarity=0.162  Sum_probs=172.3

Q ss_pred             hhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhH
Q 043676          171 RPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQ  250 (446)
Q Consensus       171 ~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~  250 (446)
                      .+.+..+..++...|+.++..++.++..+....+.......-..+++.++.++.+.+..+...|+.++..+..+.+-.-.
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            45788899999999999999999999999987655555555558999999999999999999999999999987664444


Q ss_pred             HHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCC
Q 043676          251 CIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGG  330 (446)
Q Consensus       251 ~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  330 (446)
                      .+.  .+...+..+++++ ++-.+.+++-.++.+--.+..       .+++..+..++.+.+.+++..++.++.+++...
T Consensus       112 ~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S  181 (265)
T 3b2a_A          112 TFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS  181 (265)
T ss_dssp             HHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred             HHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence            333  2567888999987 899999999999988322211       136677888888899999999999999998754


Q ss_pred             C-HHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhh-cC
Q 043676          331 T-QEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQ-SH  408 (446)
Q Consensus       331 ~-~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~-~~  408 (446)
                      + ++..     .+++.-+-+++++.|+.++..|+.++..++...-...          .....   .+.......+. -.
T Consensus       182 ~D~~i~-----~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~----------~~~~~---~~~~~~v~~l~~~~  243 (265)
T 3b2a_A          182 ADSGHL-----TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLEN----------VKIEL---LKISRIVDGLVYRE  243 (265)
T ss_dssp             SSCCCG-----GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSC----------CHHHH---HHHHHHHHHGGGCS
T ss_pred             CCHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHh----------HHHHH---HHHHHHHHHHHHhc
Confidence            2 2222     2367778889999999999999999999987633221          11111   23345567887 66


Q ss_pred             CCHHHHHHHHHHHHH
Q 043676          409 DNNEIHEKSVKIFKT  423 (446)
Q Consensus       409 ~~~~v~~~a~~~l~~  423 (446)
                      ..|.++.+|..+-+.
T Consensus       244 ~~~~~~~ka~~v~~~  258 (265)
T 3b2a_A          244 GAPIIRLKAKKVSDL  258 (265)
T ss_dssp             SCHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHH
Confidence            778998888876654

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.17  E-value=2.2e-09  Score=94.29  Aligned_cols=276  Identities=11%  Similarity=0.036  Sum_probs=164.7

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV   83 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   83 (446)
                      ++.+++.+.++|..++...--.+..++... .+.    +  =++..|.+=+++++ +-+|..|+++|+++..  ++..+.
T Consensus        70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e~----i--Lv~Nsl~kDl~~~N-~~iR~lALRtL~~I~~--~~m~~~  139 (355)
T 3tjz_B           70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-EDV----I--IVTSSLTKDMTGKE-DSYRGPAVRALCQITD--STMLQA  139 (355)
T ss_dssp             HHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SCG----G--GGHHHHHHHHHSSC-HHHHHHHHHHHHHHCC--TTTHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HHH----H--HHHHHHHhhcCCCc-HhHHHHHHHHHhcCCC--HHHHHH
Confidence            345678899999999998888888766642 221    1  24777888889999 8999999999999986  444333


Q ss_pred             HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 043676           84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKP  163 (446)
Q Consensus        84 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  163 (446)
                           +.+.+.+.+.+.++.||..|+.+..++....|+..     .+.+..+-.++ .+.++-++.+++.+|..+...+ 
T Consensus       140 -----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d-  207 (355)
T 3tjz_B          140 -----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND-  207 (355)
T ss_dssp             -----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC-
T ss_pred             -----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc-
Confidence                 35778889999999999999999999998887642     25788888888 7788899999999999998753 


Q ss_pred             CCChhhhhhhHHHHHHhhcCC---CHhHHHHHHHHHHHhccCC-cHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHH
Q 043676          164 EPPFDQVRPALPALAQLVHSN---DEDVLTYACWSLSYLADGT-NDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVG  239 (446)
Q Consensus       164 ~~~~~~~~~~~~~l~~ll~~~---~~~v~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~  239 (446)
                             ...+..++..+...   ++-.+...++.+..++..+ +..     ...+++.+..++++.++.|..+|+.++.
T Consensus       208 -------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~-----~~~~~~~l~~~L~~~~~aVvyEa~k~I~  275 (355)
T 3tjz_B          208 -------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSR-----DSPLFDFIESCLRNKHEMVVYEAASAIV  275 (355)
T ss_dssp             -------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHHT
T ss_pred             -------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhh-----HHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence                   22444555555442   5666666777776666554 222     2367788899999999999999999998


Q ss_pred             HhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHH
Q 043676          240 NIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEA  319 (446)
Q Consensus       240 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a  319 (446)
                      .+.......    . ..++..+..++.++ ++.+|-.|+..|..+....|...+     ..-..+.+++.+++..+...|
T Consensus       276 ~l~~~~~~~----~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~-----~~n~~ie~li~d~n~sI~t~A  344 (355)
T 3tjz_B          276 NLPGCSAKE----L-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVT-----ACNLDLENLVTDANRSIATLA  344 (355)
T ss_dssp             C----------------CCCTHHHHHHSS-SSSSHHHHHHCC--------------------------------------
T ss_pred             hccCCCHHH----H-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHH-----HHHHHHHHHccCCcHhHHHHH
Confidence            886532221    1 23456677778777 889999999999999776565433     234456778888887776666


Q ss_pred             HHHHH
Q 043676          320 AWAIS  324 (446)
Q Consensus       320 ~~aL~  324 (446)
                      +.+|.
T Consensus       345 ittll  349 (355)
T 3tjz_B          345 ITTLL  349 (355)
T ss_dssp             -----
T ss_pred             HHHhh
Confidence            65554

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.14  E-value=2.6e-10  Score=111.54  Aligned_cols=198  Identities=14%  Similarity=0.109  Sum_probs=149.3

Q ss_pred             HHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHH-HHhhCCCCHHHHHHHHHHHHHhhC-C
Q 043676           41 VIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIF-VKLLSSPSDDVREQAVWALGNVAG-D  118 (446)
Q Consensus        41 ~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L-~~~L~~~~~~v~~~a~~~l~~l~~-~  118 (446)
                      ..+..++| +++.|++++ ++.|..|+++|++++. ++..+..+...+++..+ ..+|.+++.++|..|+++|.||+. .
T Consensus        31 ~~~~~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~  107 (684)
T 4gmo_A           31 LREDKILP-VLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE  107 (684)
T ss_dssp             HHHHTTHH-HHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred             cchhhHHH-HHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence            34445555 567789999 8999999999999998 88999999988888775 557899999999999999999995 4


Q ss_pred             ChHHHHHHHHcCChHHHHHHhccccc--------------------hhHHHHHHHHHHHhhcCCCC-CChhhhhhhHHHH
Q 043676          119 SPRCRDLVLSQGALIPLLAELNEHAK--------------------LSMLRNATRTLSNFCRGKPE-PPFDQVRPALPAL  177 (446)
Q Consensus       119 ~~~~~~~~~~~~~i~~l~~~l~~~~~--------------------~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~l  177 (446)
                      .+.....+...|++++|..++.+...                    ..+..+++.+|++||..... .......+.++.+
T Consensus       108 g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l  187 (684)
T 4gmo_A          108 EADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRL  187 (684)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHH
T ss_pred             CchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHH
Confidence            56778889999999999988842110                    13456778889999877522 2223346788888


Q ss_pred             HHhhcCC---CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHH---HHHHhcCCCCccchhHHHHHHHHhh
Q 043676          178 AQLVHSN---DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCP---RLVELLGHPSPSVLTPALRTVGNIV  242 (446)
Q Consensus       178 ~~ll~~~---~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~---~l~~ll~~~~~~~~~~a~~~l~~l~  242 (446)
                      +..+.+.   ..+++..++.+|..++..++...+.+.+.+...   .+..+. ..+...+..+++++.|+.
T Consensus       188 ~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~-~~~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          188 LFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLA-TGTDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHH-HSSCTTHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHh-cCCcHHHHHHHHHHHhHh
Confidence            8887533   468999999999999999888888777765432   333332 344455778888888874

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.13  E-value=1.2e-08  Score=77.71  Aligned_cols=217  Identities=14%  Similarity=0.145  Sum_probs=170.8

Q ss_pred             cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc-CCCHhHHHHHHHHHHHhccCCcHHH
Q 043676          129 QGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH-SNDEDVLTYACWSLSYLADGTNDKI  207 (446)
Q Consensus       129 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~v~~~~~~~l~~l~~~~~~~~  207 (446)
                      ..++..++..| ++.-..++.+++..+.++++..+    ......+..|+.+++ +..........++++.++...|+..
T Consensus        31 ~~~l~~lI~~L-DDDlwtV~kNAl~vi~~i~~~~~----el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v  105 (253)
T 2db0_A           31 ESVLKKLIELL-DDDLWTVVKNAISIIMVIAKTRE----DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV  105 (253)
T ss_dssp             HHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCG----GGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHh-ccHHHHHHHhHHHHHHHHHHHhH----HHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH
Confidence            34577888888 66667899999999999988753    234556667777765 5567788889999999998888777


Q ss_pred             HHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC
Q 043676          208 QAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG  287 (446)
Q Consensus       208 ~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~  287 (446)
                      .     +.+|.+..-..-.++.++.....+|..++..+|....     +++..+..++.++ +..=|..|+..++.+...
T Consensus       106 ~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltsk-d~~Dkl~aLnFi~alGen  174 (253)
T 2db0_A          106 K-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSK-NREDKLTALNFIEAMGEN  174 (253)
T ss_dssp             H-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCS-SHHHHHHHHHHHHTCCTT
T ss_pred             H-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcc
Confidence            6     7778898888889999999999999999998887554     3567799999988 777777788777777554


Q ss_pred             CHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHH
Q 043676          288 NREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLE  367 (446)
Q Consensus       288 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~  367 (446)
                      .....     ...+|.|+.++.+++.-+|..|..+|.+++.. ++..++.      +...++-+++.++.++..+-.+|.
T Consensus       175 ~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~-npklRki------i~~kl~e~~D~S~lv~~~V~egL~  242 (253)
T 2db0_A          175 SFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATL-NDKLRKV------VIKRLEELNDTSSLVNKTVKEGIS  242 (253)
T ss_dssp             THHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTS-CHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHH
T ss_pred             Ccccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHc-CHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHH
Confidence            44432     25899999999999999999999999999987 4554444      344556678888999999999999


Q ss_pred             HHHHhh
Q 043676          368 NILKVG  373 (446)
Q Consensus       368 ~l~~~~  373 (446)
                      .+.-..
T Consensus       243 rl~l~e  248 (253)
T 2db0_A          243 RLLLLE  248 (253)
T ss_dssp             HHHHC-
T ss_pred             HHHHHh
Confidence            876543

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.13  E-value=3e-09  Score=103.90  Aligned_cols=274  Identities=14%  Similarity=0.104  Sum_probs=191.2

Q ss_pred             hHHHHHhhc---CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCC-------ChHHHHHHHHHHHHH
Q 043676            4 FPALVAGVW---SDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRED-------YPQLQYEAAWVLINI   73 (446)
Q Consensus         4 i~~l~~~l~---s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~-------~~~~~~~a~~~L~~l   73 (446)
                      +..|-+.|.   ++++.++.-|+..|.-+..+.  ..       .++..|...+.+++       .+.++..|+..|+-+
T Consensus       394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~--~~-------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla  464 (963)
T 4ady_A          394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGF--GR-------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA  464 (963)
T ss_dssp             HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTT--TH-------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCC--cH-------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence            455556666   677889999999998766653  11       14677777776544       367898999999998


Q ss_pred             cCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHH
Q 043676           74 ASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATR  153 (446)
Q Consensus        74 ~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~  153 (446)
                      ..++..  .     .+++.|..++.+.+..+++.|..+|+.+..+.... +      ++..++..+..+.+..+++.++.
T Consensus       465 ~~GS~~--e-----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-~------ai~~LL~~~~e~~~e~vrR~aal  530 (963)
T 4ady_A          465 AMGSAN--I-----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-E------AIHDMFTYSQETQHGNITRGLAV  530 (963)
T ss_dssp             STTCCC--H-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-H------HHHHHHHHHHHCSCHHHHHHHHH
T ss_pred             hcCCCC--H-----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-H------HHHHHHHHHhccCcHHHHHHHHH
Confidence            653321  1     24677888888877778888999998774332211 1      24566666545667889999999


Q ss_pred             HHHHhhcCCCCCChhhhhhhHHHHHHhhc-CCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHH-hcCCCCccch
Q 043676          154 TLSNFCRGKPEPPFDQVRPALPALAQLVH-SNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVE-LLGHPSPSVL  231 (446)
Q Consensus       154 ~L~~l~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~-ll~~~~~~~~  231 (446)
                      +|+.+....        ...++.++..|. +.++-+|..++.+++.-..+..+.       ..++.|++ +..+.+..+|
T Consensus       531 gLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~VR  595 (963)
T 4ady_A          531 GLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDDVR  595 (963)
T ss_dssp             HHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHHHH
T ss_pred             HHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHHHH
Confidence            999886654        244566666665 467888888888776544332221       12332333 3345677899


Q ss_pred             hHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC
Q 043676          232 TPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA  311 (446)
Q Consensus       232 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~  311 (446)
                      ..|+..|+.+..++++         .++.++.++.+..++.+|..|+++++.++.+++..       .++..|..+..+.
T Consensus       596 raAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~~D~  659 (963)
T 4ady_A          596 RAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLTKDP  659 (963)
T ss_dssp             HHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHHTCS
T ss_pred             HHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHccCC
Confidence            9999999998876653         35666665554449999999999999998765431       2667788888999


Q ss_pred             CcchHHHHHHHHHHhccCCC
Q 043676          312 EFDTKKEAAWAISNATSGGT  331 (446)
Q Consensus       312 ~~~v~~~a~~aL~~l~~~~~  331 (446)
                      +..|++.|+.+|+.+....+
T Consensus       660 d~~Vrq~Ai~ALG~Ig~gtn  679 (963)
T 4ady_A          660 VDFVRQAAMIALSMILIQQT  679 (963)
T ss_dssp             SHHHHHHHHHHHHHHSTTCC
T ss_pred             CHHHHHHHHHHHHHHhcCCc
Confidence            99999999999999987643

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=99.04  E-value=8.1e-08  Score=86.27  Aligned_cols=322  Identities=12%  Similarity=0.141  Sum_probs=196.8

Q ss_pred             cCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCh---HHHHHHHHcCChH-HHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676           87 HGAVPIFVKLLSS-PSDDVREQAVWALGNVAGDSP---RCRDLVLSQGALI-PLLAELNEHAKLSMLRNATRTLSNFCRG  161 (446)
Q Consensus        87 ~~~i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~---~~~~~~~~~~~i~-~l~~~l~~~~~~~~~~~a~~~L~~l~~~  161 (446)
                      ..++..++.+|.. .+.++.+..+..+.-+....+   .....+.+..... .+........+.-....++.++..++..
T Consensus        76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~  155 (480)
T 1ho8_A           76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN  155 (480)
T ss_dssp             STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred             chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence            4567888898876 778999999999999987766   3333333332221 2233222233344445666665666544


Q ss_pred             CCCCChhhhhhhHH--HHHHhhcCC-CHhHHHHHHHHHHHhccCCcHHHHHHHHh--CcHHHHHHhcC----CC------
Q 043676          162 KPEPPFDQVRPALP--ALAQLVHSN-DEDVLTYACWSLSYLADGTNDKIQAVIEA--GVCPRLVELLG----HP------  226 (446)
Q Consensus       162 ~~~~~~~~~~~~~~--~l~~ll~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~--~~~~~l~~ll~----~~------  226 (446)
                      .+. .......++.  .+...+... +...+.-++.++..+......+. .+.+.  .+++.++.+++    +.      
T Consensus       156 ~~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~-~f~~~~~~~~~~l~~il~~~~~~~~~~~~~  233 (480)
T 1ho8_A          156 GLH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRD-VIWLHEKKFMPTLFKILQRATDSQLATRIV  233 (480)
T ss_dssp             TTC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHH-HHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred             CCc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHH-HHHHcccchhHHHHHHHHHhhccccccccc
Confidence            322 2333344444  445555542 44556678888888877644332 34332  24555544322    11      


Q ss_pred             -------CccchhHHHHHHHHhhcCCchhhHHHHhcCCh--HHHHHHhccCchHHHHHHHHHHHHHHhcCC----HHHHH
Q 043676          227 -------SPSVLTPALRTVGNIVTGDDFQTQCIINHGAV--PYLLDMLVHNHEEIIKKEISWIISNITAGN----REQIQ  293 (446)
Q Consensus       227 -------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~----~~~~~  293 (446)
                             ...++..++.|++-++.. +.....+...++.  ..++.+++....+++..-++.++.|+....    .....
T Consensus       234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~  312 (480)
T 1ho8_A          234 ATNSNHLGIQLQYHSLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK  312 (480)
T ss_dssp             -----CCHHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred             cccCCCccHHHHHHHHHHHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence                   133567889999988874 4455556555543  567777776656788888999999998754    22223


Q ss_pred             H-HHHcCChHHHHHHHhcC---CcchHHHHHHHHHHhcc---------------------CC----C----HHHHHHHHH
Q 043676          294 A-VIDAGLIRPIVNLLQNA---EFDTKKEAAWAISNATS---------------------GG----T----QEQIKHLVR  340 (446)
Q Consensus       294 ~-~~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~~l~~---------------------~~----~----~~~~~~l~~  340 (446)
                      . ++..++ +++++.+...   |+++....-.....+-.                     .+    +    .++...|.+
T Consensus       313 ~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e  391 (480)
T 1ho8_A          313 QLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK  391 (480)
T ss_dssp             HHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred             HHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh
Confidence            2 333344 4455666543   55554332222221111                     00    1    112222222


Q ss_pred             c--CChHHHHhcccC----------CCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcC
Q 043676          341 E--GCVKPLCDLLLC----------SDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSH  408 (446)
Q Consensus       341 ~--~~i~~L~~ll~~----------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~  408 (446)
                      +  ..+..|+++|++          .|+.+...||.=+..+++..+..             +..+.+.|+-+.+.+|++|
T Consensus       392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~g-------------r~i~~~lg~K~~VM~Lm~h  458 (480)
T 1ho8_A          392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES-------------IDVLDKTGGKADIMELLNH  458 (480)
T ss_dssp             GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH-------------HHHHHHHSHHHHHHHHTSC
T ss_pred             cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcch-------------hHHHHHcCcHHHHHHHhcC
Confidence            2  247788888873          46788889999999999988876             5888999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhc
Q 043676          409 DNNEIHEKSVKIFKTYW  425 (446)
Q Consensus       409 ~~~~v~~~a~~~l~~~~  425 (446)
                      ++++|+..|..+++++.
T Consensus       459 ~d~~Vr~~AL~avQklm  475 (480)
T 1ho8_A          459 SDSRVKYEALKATQAII  475 (480)
T ss_dssp             SSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            99999999999888763

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.04  E-value=6.2e-09  Score=91.47  Aligned_cols=277  Identities=12%  Similarity=0.110  Sum_probs=159.7

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHH
Q 043676           45 GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD  124 (446)
Q Consensus        45 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~  124 (446)
                      .+....++++++++ ..+|...-..+.+++...++..      =++..+.+=++++++-+|..|+++++++....  ..+
T Consensus        68 ~lf~~v~kl~~s~d-~~lKrLvYLyl~~~~~~~~e~i------Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~--m~~  138 (355)
T 3tjz_B           68 EAFFAMTKLFQSND-PTLRRMCYLTIKEMSCIAEDVI------IVTSSLTKDMTGKEDSYRGPAVRALCQITDST--MLQ  138 (355)
T ss_dssp             HHHHHHHGGGGCCC-HHHHHHHHHHHHHHTTTSSCGG------GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT--THH
T ss_pred             HHHHHHHHHhcCCC-HHHHHHHHHHHHHhCCCHHHHH------HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH--HHH
Confidence            35667788999999 8999999989989887433321      24678888888999999999999999998443  212


Q ss_pred             HHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCc
Q 043676          125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTN  204 (446)
Q Consensus       125 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~  204 (446)
                      .     ..+.+-+.+ .+.++.++..|+.+...+....|.    ...++++.+..++.+.++.++.+++.++..+...+.
T Consensus       139 ~-----l~~~lk~~L-~d~~pyVRk~A~l~~~kL~~~~pe----~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~  208 (355)
T 3tjz_B          139 A-----IERYMKQAI-VDKVPSVSSSALVSSLHLLKCSFD----VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR  208 (355)
T ss_dssp             H-----HHHHHHHHH-TCSSHHHHHHHHHHHHHHTTTCHH----HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH
T ss_pred             H-----HHHHHHHHc-CCCCHHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch
Confidence            2     234566666 788999999999999999876532    345789999999999999999999999999987654


Q ss_pred             HHHHHHHHhCcHHHHHHhcCCC---CccchhHHHHHHHHhhcCC-chhhHHHHhcCChHHHHHHhccCchHHHHHHHHHH
Q 043676          205 DKIQAVIEAGVCPRLVELLGHP---SPSVLTPALRTVGNIVTGD-DFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWI  280 (446)
Q Consensus       205 ~~~~~~~~~~~~~~l~~ll~~~---~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~  280 (446)
                      ...         ..++..+...   ++-.+...+..+..++..+ +.     ....+++.+..+|++. ++.|.-+|+.+
T Consensus       209 ~a~---------~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~-~~aVvyEa~k~  273 (355)
T 3tjz_B          209 LAV---------SKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNK-HEMVVYEAASA  273 (355)
T ss_dssp             HHH---------HHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCS-SHHHHHHHHHH
T ss_pred             HHH---------HHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCC-ChHHHHHHHHH
Confidence            222         2223333221   2222222333333443333 11     2245678888889988 89999999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHH
Q 043676          281 ISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVT  360 (446)
Q Consensus       281 l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~  360 (446)
                      +..+...+..    .. ..++..+..++.+.++.+|..|+..|..+... .|+....     +-..+.+++.++|..+..
T Consensus       274 I~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~-~P~~v~~-----~n~~ie~li~d~n~sI~t  342 (355)
T 3tjz_B          274 IVNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMK-HPSAVTA-----CNLDLENLVTDANRSIAT  342 (355)
T ss_dssp             HTC----------------CCCTHHHHHHSSSSSSHHHHHHCC-------------------------------------
T ss_pred             HHhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-CcHHHHH-----HHHHHHHHccCCcHhHHH
Confidence            9988442221    11 24567777888899999999999999999875 3333322     456688889999988887


Q ss_pred             HHHHHH
Q 043676          361 VCLIGL  366 (446)
Q Consensus       361 ~~~~~l  366 (446)
                      .|+..|
T Consensus       343 ~Aittl  348 (355)
T 3tjz_B          343 LAITTL  348 (355)
T ss_dssp             ------
T ss_pred             HHHHHh
Confidence            766554

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.01  E-value=1.8e-09  Score=105.54  Aligned_cols=198  Identities=13%  Similarity=0.045  Sum_probs=148.3

Q ss_pred             hhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHH-HHhcCCCCccchhHHHHHHHHhhcC-Cchhh
Q 043676          172 PALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRL-VELLGHPSPSVLTPALRTVGNIVTG-DDFQT  249 (446)
Q Consensus       172 ~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l-~~ll~~~~~~~~~~a~~~l~~l~~~-~~~~~  249 (446)
                      .++| +++.|+++++..|..|+++|.+++.. +...+.+...+++..+ ..++.+++..+|..|+++|.||+.. ..+.+
T Consensus        35 ~i~P-ll~~L~S~~~~~r~~A~~al~~l~~~-~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~  112 (684)
T 4gmo_A           35 KILP-VLKDLKSPDAKSRTTAAGAIANIVQD-AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC  112 (684)
T ss_dssp             TTHH-HHHHHSSSCCSHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hHHH-HHHHcCCCCHHHHHHHHHHHHHHHcC-cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence            3445 55678999999999999999999974 4455567777888765 5678889999999999999999864 45677


Q ss_pred             HHHHhcCChHHHHHHhccCch--------------------HHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 043676          250 QCIINHGAVPYLLDMLVHNHE--------------------EIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQ  309 (446)
Q Consensus       250 ~~~~~~~~~~~l~~~l~~~~~--------------------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~  309 (446)
                      ..++..++++.|..+++....                    ..+...++.+|.+++.++.+....+...+.++.|+..+.
T Consensus       113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~  192 (684)
T 4gmo_A          113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI  192 (684)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence            788899999999988854200                    123456778899998888888888888899999999885


Q ss_pred             cC---CcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcc--cCCCHHHHHHHHHHHHHHHHh
Q 043676          310 NA---EFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLL--LCSDPEIVTVCLIGLENILKV  372 (446)
Q Consensus       310 ~~---~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll--~~~~~~~~~~~~~~l~~l~~~  372 (446)
                      +.   ..+++..|+.+|..++.. +++....+.+.+....+..++  ...+...+..++++|.+++..
T Consensus       193 ~~~~~~~~v~~~a~~~L~~ls~d-n~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~~~  259 (684)
T 4gmo_A          193 SADIAPQDIYEEAISCLTTLSED-NLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVFTS  259 (684)
T ss_dssp             HHCCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHHHHhcc-CHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHhhh
Confidence            43   357999999999999876 567777777765433322222  223333456678888888653

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.96  E-value=1.7e-07  Score=91.84  Aligned_cols=271  Identities=14%  Similarity=0.096  Sum_probs=186.8

Q ss_pred             CHHHHHHhhc---CCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCC--------HHHHHHHHHHHHH
Q 043676           46 VVPRFVEFLM---REDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPS--------DDVREQAVWALGN  114 (446)
Q Consensus        46 ~~~~L~~ll~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~--------~~v~~~a~~~l~~  114 (446)
                      ++..|-+.|.   +++ +.++.-|+.+|+.+..+...        .++..|...|.+++        +.++..|+..|+-
T Consensus       393 gl~~L~~yL~~~~s~~-~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          393 GKKVMAPYLPGSRASS-RFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHHHHTTTSTTSCCSC-HHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCc-HHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            4666666666   455 78999999999999874432        13677777776644        6788899999998


Q ss_pred             hhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhh-cCCCHhHHHHHH
Q 043676          115 VAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLV-HSNDEDVLTYAC  193 (446)
Q Consensus       115 l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll-~~~~~~v~~~~~  193 (446)
                      +..++..  +.     ++..|...+ .+.+...+..++.+|+.+..+..+      ...+..|+..+ .+.+..+++.+.
T Consensus       464 a~~GS~~--ee-----v~e~L~~~L-~dd~~~~~~~AalALGli~vGTgn------~~ai~~LL~~~~e~~~e~vrR~aa  529 (963)
T 4ady_A          464 AAMGSAN--IE-----VYEALKEVL-YNDSATSGEAAALGMGLCMLGTGK------PEAIHDMFTYSQETQHGNITRGLA  529 (963)
T ss_dssp             HSTTCCC--HH-----HHHHHHHHH-HTCCHHHHHHHHHHHHHHHTTCCC------HHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred             HhcCCCC--HH-----HHHHHHHHH-hcCCHHHHHHHHHHHhhhhcccCC------HHHHHHHHHHHhccCcHHHHHHHH
Confidence            7644321  11     345677777 444555667888888876554322      23445555544 355789999999


Q ss_pred             HHHHHhccCCcHHHHHHHHhCcHHHHHHhcC-CCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHH
Q 043676          194 WSLSYLADGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEI  272 (446)
Q Consensus       194 ~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  272 (446)
                      .+|+.+....++..         +.++..|. +.++.+|..++.+++.-..+.....       .++.|+..+.+..+..
T Consensus       530 lgLGll~~g~~e~~---------~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~-------aIq~LL~~~~~d~~d~  593 (963)
T 4ady_A          530 VGLALINYGRQELA---------DDLITKMLASDESLLRYGGAFTIALAYAGTGNNS-------AVKRLLHVAVSDSNDD  593 (963)
T ss_dssp             HHHHHHTTTCGGGG---------HHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH-------HHHHHHHHHHHCSCHH
T ss_pred             HHHHhhhCCChHHH---------HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHhccCCcHH
Confidence            99998887766444         44444444 4677788888888775554443321       3565666654443788


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHH-HhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcc
Q 043676          273 IKKEISWIISNITAGNREQIQAVIDAGLIRPIVNL-LQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLL  351 (446)
Q Consensus       273 v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll  351 (446)
                      +|..|+.+|+.+..+.+         ..++.++.+ .++.++.+|..|+.+|+.++.+.....        +++.|..+.
T Consensus       594 VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~--------aid~L~~L~  656 (963)
T 4ady_A          594 VRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS--------AIDVLDPLT  656 (963)
T ss_dssp             HHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHH--------HHHHHHHHH
T ss_pred             HHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHH--------HHHHHHHHc
Confidence            99999999999876654         256666664 456799999999999999976533211        466778888


Q ss_pred             cCCCHHHHHHHHHHHHHHHHh
Q 043676          352 LCSDPEIVTVCLIGLENILKV  372 (446)
Q Consensus       352 ~~~~~~~~~~~~~~l~~l~~~  372 (446)
                      ++.++.|+..|+.+|..+..-
T Consensus       657 ~D~d~~Vrq~Ai~ALG~Ig~g  677 (963)
T 4ady_A          657 KDPVDFVRQAAMIALSMILIQ  677 (963)
T ss_dssp             TCSSHHHHHHHHHHHHHHSTT
T ss_pred             cCCCHHHHHHHHHHHHHHhcC
Confidence            999999999999999986643

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.94  E-value=5.4e-09  Score=88.65  Aligned_cols=185  Identities=15%  Similarity=0.241  Sum_probs=143.3

Q ss_pred             HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc-CCCHhHHHHHHHHHHHhccCCcHHHHHHHH
Q 043676          134 PLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH-SNDEDVLTYACWSLSYLADGTNDKIQAVIE  212 (446)
Q Consensus       134 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~  212 (446)
                      .+...+ .+.+...+..++..|..+....+.........+++.+...+. +.+..++..++.+++.++..-........ 
T Consensus        19 ~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~-   96 (242)
T 2qk2_A           19 DFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA-   96 (242)
T ss_dssp             THHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH-
T ss_pred             HHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH-
Confidence            466777 688999999999999999887322212234678889999995 88999999999999999964333232222 


Q ss_pred             hCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC-CHHH
Q 043676          213 AGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG-NREQ  291 (446)
Q Consensus       213 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~-~~~~  291 (446)
                      ..+++.++..+.+.+..+|..|..++..++....  ..     .+++.+...+++. ++.+|..++..|+.+... .+..
T Consensus        97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~  168 (242)
T 2qk2_A           97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNK-NPSVKSETALFIARALTRTQPTA  168 (242)
T ss_dssp             HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCC
Confidence            3688999999999999999999999999987543  11     2578889999988 899999999999997543 2321


Q ss_pred             -HHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccC
Q 043676          292 -IQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSG  329 (446)
Q Consensus       292 -~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  329 (446)
                       ....+. .++|.+..++.+.++++|..|..+++.++..
T Consensus       169 ~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~  206 (242)
T 2qk2_A          169 LNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKL  206 (242)
T ss_dssp             CCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence             122222 5899999999999999999999999999764

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.93  E-value=5.1e-08  Score=77.77  Aligned_cols=185  Identities=15%  Similarity=0.139  Sum_probs=148.4

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV   83 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   83 (446)
                      +..+..+|+..|+.++..++.+|.++.... +...+...-..+++.+++++.+.+ +.+...|++||..+..+.|-....
T Consensus        35 l~~L~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vpL~~~~  112 (265)
T 3b2a_A           35 LFLILELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVPMGSKT  112 (265)
T ss_dssp             HHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCCCCHHH
Confidence            567888999999999999999999999874 333444444467999999999999 899999999999999866655555


Q ss_pred             HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 043676           84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKP  163 (446)
Q Consensus        84 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  163 (446)
                      +..  ++.++...+.++++-++..++..++.+--..+. + .     .+..+.+++ .+.+..++..++.++.+++....
T Consensus       113 y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~-~-~-----V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S~  182 (265)
T 3b2a_A          113 FLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS-K-L-----VRTYINELV-VSPDLYTKVAGFCLFLNMLNSSA  182 (265)
T ss_dssp             HHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC-H-H-----HHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGCS
T ss_pred             HHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccch-H-H-----HHHHHHHHH-hCCChhHHHHHHHHHHHhhcccC
Confidence            543  468899999999999999999999998422221 1 1     346777788 89999999999999999998752


Q ss_pred             CCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccC
Q 043676          164 EPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADG  202 (446)
Q Consensus       164 ~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~  202 (446)
                        +.....+++.-+-.++++.|+.+++.++.++-.+...
T Consensus       183 --D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          183 --DSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF  219 (265)
T ss_dssp             --SCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             --CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence              2234456677788899999999999999999998865

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.85  E-value=2e-08  Score=85.10  Aligned_cols=185  Identities=12%  Similarity=0.094  Sum_probs=139.6

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhc-CCCChHHHHHHHHHHHHHcCCChhhHHHH
Q 043676            6 ALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLM-REDYPQLQYEAAWVLINIASGTSENTNVV   84 (446)
Q Consensus         6 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~   84 (446)
                      .+.+.+.+.+...|..|+..|..++.+...-.....  ..+++.|...+. +.+ ..++..|+.+++.++..-.......
T Consensus        19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~-~~V~~~a~~~l~~la~~l~~~~~~~   95 (242)
T 2qk2_A           19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSN-VVLVAMAGKCLALLAKGLAKRFSNY   95 (242)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            578889999999999999999998876211000001  135777888885 777 8999999999999996221111111


Q ss_pred             HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-C
Q 043676           85 IDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK-P  163 (446)
Q Consensus        85 ~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~  163 (446)
                      . ..+++.++..+.++++.+|+.+..++..++...+ ..      ..++.+...+ ++.++.++..++..|..+.... +
T Consensus        96 ~-~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~~------~ll~~l~~~l-~~~~~~vr~~~l~~l~~~l~~~~~  166 (242)
T 2qk2_A           96 A-SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-LE------AQQESIVESL-SNKNPSVKSETALFIARALTRTQP  166 (242)
T ss_dssp             H-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-HH------HHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred             H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-HH------HHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHcCC
Confidence            1 2468999999999999999999999999986543 11      1456777888 6778999999999999976554 3


Q ss_pred             C-CChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccC
Q 043676          164 E-PPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADG  202 (446)
Q Consensus       164 ~-~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~  202 (446)
                      . ........++|.+..++.+.++++|..+..+++.++..
T Consensus       167 ~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~  206 (242)
T 2qk2_A          167 TALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL  206 (242)
T ss_dssp             GGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence            2 23345578999999999999999999999999988754

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.85  E-value=2.2e-08  Score=84.68  Aligned_cols=192  Identities=10%  Similarity=0.107  Sum_probs=141.3

Q ss_pred             HHHHhccccchhHHHHHHHHHHH-hhcCCCCCC--hhhhhhhHHHHHHhh-cCCCHhHHHHHHHHHHHhccCCc-HHHH-
Q 043676          135 LLAELNEHAKLSMLRNATRTLSN-FCRGKPEPP--FDQVRPALPALAQLV-HSNDEDVLTYACWSLSYLADGTN-DKIQ-  208 (446)
Q Consensus       135 l~~~l~~~~~~~~~~~a~~~L~~-l~~~~~~~~--~~~~~~~~~~l~~ll-~~~~~~v~~~~~~~l~~l~~~~~-~~~~-  208 (446)
                      +...+ .+.+..-|..++..|.. ++.+.+...  ......++..+...+ .+.+..++..++.+++.++..-. .... 
T Consensus        21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            44555 67889999999999999 886543322  223357788889999 68899999999999999985432 1221 


Q ss_pred             HHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCC
Q 043676          209 AVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGN  288 (446)
Q Consensus       209 ~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~  288 (446)
                      ... ..+++.++..+++....++..+..++..++...+.......-..+++.+...+++. ++.+|..++.+|..++...
T Consensus       100 ~y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~  177 (249)
T 2qk1_A          100 DYV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEE  177 (249)
T ss_dssp             HHH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHC
T ss_pred             HHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHc
Confidence            122 25789999999998899999988888888864421110000012567888999998 8999999999999998633


Q ss_pred             H---HHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccC
Q 043676          289 R---EQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSG  329 (446)
Q Consensus       289 ~---~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  329 (446)
                      +   ......+...++|.+.+++.+.++.+|..|..+++.++..
T Consensus       178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~  221 (249)
T 2qk1_A          178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI  221 (249)
T ss_dssp             CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            2   3333444247999999999999999999999999998653

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.74  E-value=1e-07  Score=80.64  Aligned_cols=189  Identities=13%  Similarity=0.176  Sum_probs=139.5

Q ss_pred             HHHhhcCCCChHHHHHHHHHHHH-HcCCChhhHHHHHh-cCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCC--hHHH-
Q 043676           50 FVEFLMREDYPQLQYEAAWVLIN-IASGTSENTNVVID-HGAVPIFVKLL-SSPSDDVREQAVWALGNVAGDS--PRCR-  123 (446)
Q Consensus        50 L~~ll~~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~-~~~i~~L~~~L-~~~~~~v~~~a~~~l~~l~~~~--~~~~-  123 (446)
                      +.+.+.+.+ ..-|..|+..|.. ++.+.++....-.+ ..++..|.+.+ ++.+..++..|+.+++.++.+-  +... 
T Consensus        21 f~~~l~s~~-w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           21 FQERITSSK-WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             HHHHHTCSS-HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             HHHHhhcCC-HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            456678888 6889999999999 87533322100000 13467788888 7899999999999999998422  1221 


Q ss_pred             HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhh--hhhhHHHHHHhhcCCCHhHHHHHHHHHHHhcc
Q 043676          124 DLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQ--VRPALPALAQLVHSNDEDVLTYACWSLSYLAD  201 (446)
Q Consensus       124 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~  201 (446)
                      .....  .++.++..+ .+....++..+..++..++...+. ....  ...+++.+...+++.++.++..++.+|..++.
T Consensus       100 ~y~~~--llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~  175 (249)
T 2qk1_A          100 DYVSL--VFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK  175 (249)
T ss_dssp             HHHHH--HHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHH--HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence            22211  577888888 667788999999999999886522 2222  56789999999999999999999999999986


Q ss_pred             CCc---HHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 043676          202 GTN---DKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVT  243 (446)
Q Consensus       202 ~~~---~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~  243 (446)
                      ...   ......+...+++.+..++.+.++.+|..|..+++.++.
T Consensus       176 ~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          176 EEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             HCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            554   333233324899999999999999999999999998874

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.70  E-value=5.8e-06  Score=74.44  Aligned_cols=297  Identities=16%  Similarity=0.132  Sum_probs=179.1

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHH--HHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcC-
Q 043676           12 WSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVP--RFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHG-   88 (446)
Q Consensus        12 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~--~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-   88 (446)
                      ..+++..+..|..++..++... ....+..  ..++.  .++..|........+..++.+|..+.. .++.|..+.+.+ 
T Consensus       135 ~~dd~~~ll~a~~l~~ll~~~~-~~~~~~l--~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~  210 (480)
T 1ho8_A          135 KGDFQTVLISGFNVVSLLVQNG-LHNVKLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEK  210 (480)
T ss_dssp             CSSHHHHHHHHHHHHHHHTSTT-TCCHHHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHH
T ss_pred             cccchHHHHHHHHHHHHHhccC-CccHhHH--HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHccc
Confidence            3455555566665555554432 2221111  12233  455666664225667789999999998 889999887653 


Q ss_pred             -ChHHHHHhhCC-----------------CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCCh--HHHHHHhccccchhHH
Q 043676           89 -AVPIFVKLLSS-----------------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGAL--IPLLAELNEHAKLSML  148 (446)
Q Consensus        89 -~i~~L~~~L~~-----------------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i--~~l~~~l~~~~~~~~~  148 (446)
                       .++.++.+++.                 ....++..++.+++-++...+ ..+.+...+..  ..++..++....+.+.
T Consensus       211 ~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvv  289 (480)
T 1ho8_A          211 KFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVS  289 (480)
T ss_dssp             HHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHH
T ss_pred             chhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhH
Confidence             35555443321                 135678899999999995544 55555555532  5666777677789999


Q ss_pred             HHHHHHHHHhhcCCCCCCh------hhhhhhHHHHHHhhcC---CCHhHHHHHHHHHHHhccC---CcHHHHHHHHhCcH
Q 043676          149 RNATRTLSNFCRGKPEPPF------DQVRPALPALAQLVHS---NDEDVLTYACWSLSYLADG---TNDKIQAVIEAGVC  216 (446)
Q Consensus       149 ~~a~~~L~~l~~~~~~~~~------~~~~~~~~~l~~ll~~---~~~~v~~~~~~~l~~l~~~---~~~~~~~~~~~~~~  216 (446)
                      +-++.+|.|+....+....      ....++++ ++..|..   .|+++.+..-..-..|...   -...-+      ..
T Consensus       290 Rv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDe------Y~  362 (480)
T 1ho8_A          290 RLCISIILQCCSTRVKQHKKVIKQLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDE------YV  362 (480)
T ss_dssp             HHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHH------HH
T ss_pred             HHHHHHHHHHhcccchhhhhHHHHHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHH------HH
Confidence            9999999999987532211      11133433 4444443   2666665543333222211   000000      00


Q ss_pred             HHHH-HhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhcc---------CchHHHHHHHHHHHHHHhc
Q 043676          217 PRLV-ELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVH---------NHEEIIKKEISWIISNITA  286 (446)
Q Consensus       217 ~~l~-~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~---------~~~~~v~~~a~~~l~~l~~  286 (446)
                      .-+. ..|.= +|.-+....| -.|.....+...+      ++..|.++|.+         +.++.+..-||.-++.++.
T Consensus       363 ~El~sG~L~W-SP~H~se~FW-~ENa~kf~e~~~~------llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr  434 (480)
T 1ho8_A          363 AELDSKLLCW-SPPHVDNGFW-SDNIDEFKKDNYK------IFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVE  434 (480)
T ss_dssp             HHHHHTCCCC-CGGGGCHHHH-HHHSGGGSSGGGH------HHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCccc-CCCccchhHH-HHHHHHHHhcchH------HHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHH
Confidence            0011 11111 2222333333 3344443333332      56788888873         2267888889999999999


Q ss_pred             CCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhcc
Q 043676          287 GNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATS  328 (446)
Q Consensus       287 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  328 (446)
                      ..|..+..+-+.|+=..+++++.++|++||.+|+.|+..+..
T Consensus       435 ~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          435 LLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  476 (480)
T ss_dssp             HCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             HCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            888888877788999999999999999999999999988754

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.65  E-value=9.5e-06  Score=83.11  Aligned_cols=343  Identities=10%  Similarity=0.039  Sum_probs=196.6

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCC------hh
Q 043676            6 ALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGT------SE   79 (446)
Q Consensus         6 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~------~~   79 (446)
                      .+++.+.+++..++...+.++..++..+.....     .++++.|++.+++++ +..+..++.++..++...      ++
T Consensus        89 ~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~W-----p~ll~~L~~~l~s~~-~~~~~~aL~~l~~i~~~~~~~~~~~~  162 (960)
T 1wa5_C           89 EIVPLMISLPNNLQVQIGEAISSIADSDFPDRW-----PTLLSDLASRLSNDD-MVTNKGVLTVAHSIFKRWRPLFRSDE  162 (960)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHTTCCSSC-TTHHHHHHHHHHHHHGGGTTSCCCHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhhCccch-----hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHhhcChH
Confidence            455666666688899999999988875312111     267999999999887 788899999999988622      12


Q ss_pred             hHHHH---HhcCChHHHHH-------hhCCCCH---------HHHHHHHHHHHHhhC-CChHH-HHHHHHcCChHHHHHH
Q 043676           80 NTNVV---IDHGAVPIFVK-------LLSSPSD---------DVREQAVWALGNVAG-DSPRC-RDLVLSQGALIPLLAE  138 (446)
Q Consensus        80 ~~~~~---~~~~~i~~L~~-------~L~~~~~---------~v~~~a~~~l~~l~~-~~~~~-~~~~~~~~~i~~l~~~  138 (446)
                      .+..+   +. ...+.++.       .+.++..         .+...++.+++++.. +.+.. .+.+.  ..++.+.+.
T Consensus       163 ~~~~l~~~l~-~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~--~~~~~~~~~  239 (960)
T 1wa5_C          163 LFLEIKLVLD-VFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQ--VGMGIFHKY  239 (960)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHH--HHHHHHHHH
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH--HHHHHHHHH
Confidence            22211   11 11232222       3444321         233346666666652 22321 11111  123444555


Q ss_pred             hccc-----cc---------hhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc-----CCCHhHHHHHHHHHHHh
Q 043676          139 LNEH-----AK---------LSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH-----SNDEDVLTYACWSLSYL  199 (446)
Q Consensus       139 l~~~-----~~---------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~-----~~~~~v~~~~~~~l~~l  199 (446)
                      +...     .+         ..++..++.++..+....+..-......+++.....+.     ..++.++..++..+..+
T Consensus       240 l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~  319 (960)
T 1wa5_C          240 LSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAV  319 (960)
T ss_dssp             HSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHH
T ss_pred             HcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHH
Confidence            5221     01         24677788888877755421111123455555555554     34678899999999888


Q ss_pred             ccCCcHHHH----HHHHhCcH-HHHHHhcCC-----------------------CCccchhHHHHHHHHhhcCCchhhHH
Q 043676          200 ADGTNDKIQ----AVIEAGVC-PRLVELLGH-----------------------PSPSVLTPALRTVGNIVTGDDFQTQC  251 (446)
Q Consensus       200 ~~~~~~~~~----~~~~~~~~-~~l~~ll~~-----------------------~~~~~~~~a~~~l~~l~~~~~~~~~~  251 (446)
                      +........    .++. .++ +.++..+.-                       .....|..|..++..++...++..  
T Consensus       320 ~~~~~~~~~~~~~~~l~-~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v--  396 (960)
T 1wa5_C          320 TRIPKYFEIFNNESAMN-NITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLV--  396 (960)
T ss_dssp             HTSHHHHGGGCSHHHHH-HHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHH--
T ss_pred             hCcHhHHHHHcCchHHH-HHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhH--
Confidence            754221100    1111 222 222333221                       112467788888888887554221  


Q ss_pred             HHhcCChHHHHHHhc------cCchHHHHHHHHHHHHHHhcCC--HH----------HHHHHHHcCChHHHHHHHhcC--
Q 043676          252 IINHGAVPYLLDMLV------HNHEEIIKKEISWIISNITAGN--RE----------QIQAVIDAGLIRPIVNLLQNA--  311 (446)
Q Consensus       252 ~~~~~~~~~l~~~l~------~~~~~~v~~~a~~~l~~l~~~~--~~----------~~~~~~~~~~i~~L~~ll~~~--  311 (446)
                       + ..+++.+...+.      +. ++..|+.|+.+++.++.+.  ..          ....++.    ..++..+.+.  
T Consensus       397 -~-~~~l~~i~~~l~~~~~~~~~-~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~----~~v~p~l~~~~~  469 (960)
T 1wa5_C          397 -T-NIFLAHMKGFVDQYMSDPSK-NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFT----KEIAPDLTSNNI  469 (960)
T ss_dssp             -H-HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHH----HHTHHHHHCSSC
T ss_pred             -H-HHHHHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHH----HHhHHHhcCCCC
Confidence             1 113444555554      44 6788999999999997531  10          1112211    1233344555  


Q ss_pred             -CcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHh
Q 043676          312 -EFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKV  372 (446)
Q Consensus       312 -~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~  372 (446)
                       ++.+|..|+|+++.++..-.++....     +++.+++.+.++++.|+..|+.+|.++++.
T Consensus       470 ~~p~vr~~a~~~lg~~~~~~~~~~l~~-----~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          470 PHIILRVDAIKYIYTFRNQLTKAQLIE-----LMPILATFLQTDEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             SCHHHHHHHHHHHHHTGGGSCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             CCceehHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence             78999999999999987654443332     577888888888899999999999998874

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.62  E-value=4e-06  Score=83.31  Aligned_cols=299  Identities=13%  Similarity=0.156  Sum_probs=206.1

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCC---hhhH
Q 043676            5 PALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGT---SENT   81 (446)
Q Consensus         5 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~---~~~~   81 (446)
                      ..+++.+...+..-+..++..+..+..+.....   ....+++..|.+.+.+.. ..  +.|+.++..++...   +..-
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~~~~e   90 (986)
T 2iw3_A           17 EELFQKLSVATADNRHEIASEVASFLNGNIIEH---DVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLSPSVE   90 (986)
T ss_dssp             HHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS---SCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCCTTTH
T ss_pred             HHHHhhccccchhHHHHHHHHHHHHHhcccccc---ccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCCCCcc
Confidence            345555665555666778888888766431111   111256777888877765 23  88899999998522   1221


Q ss_pred             HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhC-CChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676           82 NVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAG-DSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR  160 (446)
Q Consensus        82 ~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  160 (446)
                      ..++  +.++.++....+....+|..|-.++..++. .++...     ...++.++..+......+.+..++.++..++.
T Consensus        91 ~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~  163 (986)
T 2iw3_A           91 PYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVD  163 (986)
T ss_dssp             HHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             cchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence            2222  578999999988889999998888877774 333322     22578899999555578999999999999998


Q ss_pred             CCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCC-cHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHH
Q 043676          161 GKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGT-NDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVG  239 (446)
Q Consensus       161 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~  239 (446)
                      ..+.........++|.+...+.+..+++...+..++..+|.-- .....     ..+|.|+..+.+++.  ...+...|+
T Consensus       164 ~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~-----~~~~~~~~~~~~p~~--~~~~~~~l~  236 (986)
T 2iw3_A          164 AAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIE-----RFIPSLIQCIADPTE--VPETVHLLG  236 (986)
T ss_dssp             HSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG-----GGHHHHHHHHHCTTH--HHHHHHHHT
T ss_pred             HhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh-----hhHHHHHHHhcChhh--hHHHHHHhh
Confidence            7654444456788999999999999999999999998887421 11222     778999999988743  334444444


Q ss_pred             HhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc--CCHHHHHHHHHcCChHHHHHHHhc-CCcchH
Q 043676          240 NIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA--GNREQIQAVIDAGLIRPIVNLLQN-AEFDTK  316 (446)
Q Consensus       240 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~--~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~  316 (446)
                      .-+.-..... ..+ +-.+|.|..-|... ...++..++-++.|+|.  .++.....++. .++|.+.+.... .+|++|
T Consensus       237 ~~tfv~~v~~-~~l-~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe~r  312 (986)
T 2iw3_A          237 ATTFVAEVTP-ATL-SIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPEAR  312 (986)
T ss_dssp             TCCCCSCCCH-HHH-HHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHHHH
T ss_pred             cCeeEeeecc-hhH-HHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHHHH
Confidence            4332221111 111 11467777778777 78889999999999997  67877777765 677877776664 489999


Q ss_pred             HHHHHHHHHhc
Q 043676          317 KEAAWAISNAT  327 (446)
Q Consensus       317 ~~a~~aL~~l~  327 (446)
                      ..|..|+..+.
T Consensus       313 ~~~~~a~~~l~  323 (986)
T 2iw3_A          313 EVTLRALKTLR  323 (986)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            98888888773

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.61  E-value=9.9e-09  Score=77.69  Aligned_cols=120  Identities=19%  Similarity=0.196  Sum_probs=93.7

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHH
Q 043676           45 GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD  124 (446)
Q Consensus        45 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~  124 (446)
                      ..++.+..+|++++ +.+|..|+++|+.+..            ..++.|+.+|+++++.+|..++++|+++..  +.   
T Consensus        12 ~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~~---   73 (131)
T 1te4_A           12 SGLVPRGSHMADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--ER---   73 (131)
T ss_dssp             ---------CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--HH---
T ss_pred             ccHHHHHHHhcCCC-HHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--HH---
Confidence            56888999999988 8999999999987754            126889999999999999999999999862  11   


Q ss_pred             HHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHh
Q 043676          125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYL  199 (446)
Q Consensus       125 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l  199 (446)
                            .++.++..+ .++++.++..++++|..+..          ...++.|..+++++++.++..+..+|..+
T Consensus        74 ------a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           74 ------AVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             ------HHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             ------HHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                  367888888 78899999999999999852          45789999999999999999999988653

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.61  E-value=1.4e-08  Score=76.87  Aligned_cols=120  Identities=16%  Similarity=0.160  Sum_probs=91.6

Q ss_pred             hCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHH
Q 043676          213 AGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQI  292 (446)
Q Consensus       213 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~  292 (446)
                      ...++.+..+|+++++.+|..|+++|+.+...            .++.|...++++ ++.+|..|+++|+++.  ++   
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~-~~~vR~~A~~aL~~~~--~~---   72 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNE-DWRIRGAAAWIIGNFQ--DE---   72 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCS-CHHHHHHHHHHHGGGC--SH---
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCC-CHHHHHHHHHHHHhcC--CH---
Confidence            36778899999999999999999988766431            258889999988 9999999999999984  22   


Q ss_pred             HHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHH
Q 043676          293 QAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLEN  368 (446)
Q Consensus       293 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~  368 (446)
                            ..++.|+.+++++++.+|..|+++|+++..   ++         .++.|..+++++++.++..+.++|.+
T Consensus        73 ------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---~~---------a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           73 ------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG---ER---------VRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             ------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS---HH---------HHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             ------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---HH---------HHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                  257889999999999999999999999852   22         46778888999999999999988764

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.60  E-value=1.3e-05  Score=81.98  Aligned_cols=386  Identities=9%  Similarity=0.046  Sum_probs=213.9

Q ss_pred             HHHHHhhcC--CCHHHHHHHHHHHHHHhcCCC---------CCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 043676            5 PALVAGVWS--DDNSLQLEATTLSRKLLSFDR---------NPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINI   73 (446)
Q Consensus         5 ~~l~~~l~s--~~~~~~~~a~~~l~~l~~~~~---------~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l   73 (446)
                      ..|.+.+.+  .+..+|..|+-.|.+.....-         ++..+..++.    .++..+.+++ ..+|..++.++..+
T Consensus        38 ~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~----~ll~~l~~~~-~~ir~~l~~~ia~i  112 (960)
T 1wa5_C           38 LTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKK----EIVPLMISLP-NNLQVQIGEAISSI  112 (960)
T ss_dssp             HHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHH----HHHHHHHHSC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHH----HHHHHHHhCC-HHHHHHHHHHHHHH
Confidence            345666643  467889999999998765310         1112233333    3445555566 79999999999999


Q ss_pred             cCC-ChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC------hHHHHHHH--HcCChHHHHHH------
Q 043676           74 ASG-TSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDS------PRCRDLVL--SQGALIPLLAE------  138 (446)
Q Consensus        74 ~~~-~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~------~~~~~~~~--~~~~i~~l~~~------  138 (446)
                      +.. .++..     .+.++.|+..+.++++..+..++.++..++...      ++.+..+.  -....+.++.+      
T Consensus       113 a~~d~p~~W-----p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~  187 (960)
T 1wa5_C          113 ADSDFPDRW-----PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDE  187 (960)
T ss_dssp             HHHHSTTTC-----TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhCccch-----hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            862 12111     356888999998888888999999999998522      12222110  01123434333      


Q ss_pred             -hcccc-c-------hhHHHHHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhcCC------C---------HhHHHHHH
Q 043676          139 -LNEHA-K-------LSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLVHSN------D---------EDVLTYAC  193 (446)
Q Consensus       139 -l~~~~-~-------~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~------~---------~~v~~~~~  193 (446)
                       +.... +       ..+...++.+++.+.... +..........++.+..++...      +         ..++..++
T Consensus       188 ~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~  267 (960)
T 1wa5_C          188 QITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQ  267 (960)
T ss_dssp             HTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHH
Confidence             32211 1       133344666676665433 2211112345556666666421      1         25778888


Q ss_pred             HHHHHhccCCcHHHHHHHHhCcHHHHHHhcC-----CCCccchhHHHHHHHHhhcCCchhhHHHHh-cCChHHH-----H
Q 043676          194 WSLSYLADGTNDKIQAVIEAGVCPRLVELLG-----HPSPSVLTPALRTVGNIVTGDDFQTQCIIN-HGAVPYL-----L  262 (446)
Q Consensus       194 ~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~-----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~~l-----~  262 (446)
                      .++..+....++....... .+++.....+.     ..++.++..++..+..++.... .. .++. ...++.+     +
T Consensus       268 ~~l~~l~~~~~~~f~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~-~~-~~~~~~~~l~~li~~~i~  344 (960)
T 1wa5_C          268 ELVQLYTTRYEDVFGPMIN-EFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPK-YF-EIFNNESAMNNITEQIIL  344 (960)
T ss_dssp             HHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHH-HH-GGGCSHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHh-HH-HHHcCchHHHHHHHHHhH
Confidence            8888887655544432222 45555565553     2445677788888887765321 11 1111 0122222     2


Q ss_pred             HHhcc----------------------CchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh------cCCcc
Q 043676          263 DMLVH----------------------NHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQ------NAEFD  314 (446)
Q Consensus       263 ~~l~~----------------------~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~------~~~~~  314 (446)
                      ..+.-                      ......|..|..+|..++...++..   .. .+++.+...+.      +.++.
T Consensus       345 ~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v---~~-~~l~~i~~~l~~~~~~~~~~w~  420 (960)
T 1wa5_C          345 PNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLV---TN-IFLAHMKGFVDQYMSDPSKNWK  420 (960)
T ss_dssp             HHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHH---HH-HHHHHHHHHHHHHHC----CHH
T ss_pred             HhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhH---HH-HHHHHHHHHHHHhccCcchhHH
Confidence            22210                      1012467777888888776433221   11 13334444444      45678


Q ss_pred             hHHHHHHHHHHhccCCC-HH----------HHHHHHHcCChHHHHhcccCC---CHHHHHHHHHHHHHHHHhhhhhhccc
Q 043676          315 TKKEAAWAISNATSGGT-QE----------QIKHLVREGCVKPLCDLLLCS---DPEIVTVCLIGLENILKVGEAERNMG  380 (446)
Q Consensus       315 v~~~a~~aL~~l~~~~~-~~----------~~~~l~~~~~i~~L~~ll~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~  380 (446)
                      .|..|+.+++.++.++. ..          ....+...-+++.    +.++   ++-++..+++++.++...-..     
T Consensus       421 ~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~----l~~~~~~~p~vr~~a~~~lg~~~~~~~~-----  491 (960)
T 1wa5_C          421 FKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPD----LTSNNIPHIILRVDAIKYIYTFRNQLTK-----  491 (960)
T ss_dssp             HHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHH----HHCSSCSCHHHHHHHHHHHHHTGGGSCH-----
T ss_pred             HHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHH----hcCCCCCCceehHHHHHHHHHHHhhCCH-----
Confidence            89999999999975421 00          1222221112332    3444   789999999999997654211     


Q ss_pred             CCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 043676          381 TTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGR  428 (446)
Q Consensus       381 ~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~  428 (446)
                                ..+  ...++.+...+.+++..|+..|..++.++.+..
T Consensus       492 ----------~~l--~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~  527 (960)
T 1wa5_C          492 ----------AQL--IELMPILATFLQTDEYVVYTYAAITIEKILTIR  527 (960)
T ss_dssp             ----------HHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCB
T ss_pred             ----------HHH--HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcc
Confidence                      111  112445555556778999999999999988754

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.43  E-value=5.7e-05  Score=77.57  Aligned_cols=330  Identities=10%  Similarity=-0.014  Sum_probs=180.6

Q ss_pred             HHHHHHHHHHHHHhcC-CCCCcHHHHHhcCCHHHHHHhhc----------------CCCChHHHHHHHHHHHHHcCCCh-
Q 043676           17 SLQLEATTLSRKLLSF-DRNPPIEKVIQSGVVPRFVEFLM----------------REDYPQLQYEAAWVLINIASGTS-   78 (446)
Q Consensus        17 ~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~~~~~L~~ll~----------------~~~~~~~~~~a~~~L~~l~~~~~-   78 (446)
                      .++..++.++..+... . .+..   .....++.+.. +.                .++ ++++..|+.++..+....+ 
T Consensus       204 ~~~~~al~~l~~~~~~~~-ip~~---~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~l~~i~~~~~~  277 (971)
T 2x1g_F          204 SNMNRAVKCVGTWIKNIG-YTIE---GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADE-NELAESCLKTMVNIIIQPDC  277 (971)
T ss_dssp             HHHHHHHHHHHHHHHHSC-CCGG---GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHH-HHHHHHHHHHHHHHHHCSGG
T ss_pred             hHHHHHHHHHHHHHhhCC-cCcc---ccccHHHHHHh-hhhhhccccccccccccCcCC-cHHHHHHHHHHHHHHcCccc
Confidence            6788888888876652 1 1211   23345666665 41                134 7899999999999987322 


Q ss_pred             hhHHHHHhcCChHHHHH-------hhCCCC---HHHHHHHHHHHHHhhCCChHH-H-----------HHHHHcCChHHHH
Q 043676           79 ENTNVVIDHGAVPIFVK-------LLSSPS---DDVREQAVWALGNVAGDSPRC-R-----------DLVLSQGALIPLL  136 (446)
Q Consensus        79 ~~~~~~~~~~~i~~L~~-------~L~~~~---~~v~~~a~~~l~~l~~~~~~~-~-----------~~~~~~~~i~~l~  136 (446)
                      ..+...+. ..++.++.       .+.+.+   ++.....+..+..++...+.. .           ..+.  ..++.++
T Consensus       278 ~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~l~~ll  354 (971)
T 2x1g_F          278 HNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVH--RIVQEIL  354 (971)
T ss_dssp             GGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHH--HHHHHHH
T ss_pred             cccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHH--HHHHHHH
Confidence            11111111 11222222       223344   366666777777666432221 1           1111  1234444


Q ss_pred             HHhcc----ccchhHHHHHHHHHHHhhcCC--------CCCChh----hhhhhHHHHHHhhcCC-C--------------
Q 043676          137 AELNE----HAKLSMLRNATRTLSNFCRGK--------PEPPFD----QVRPALPALAQLVHSN-D--------------  185 (446)
Q Consensus       137 ~~l~~----~~~~~~~~~a~~~L~~l~~~~--------~~~~~~----~~~~~~~~l~~ll~~~-~--------------  185 (446)
                      .....    ..+..+...+++.+..+++..        ......    ....+++.++..+..+ +              
T Consensus       355 ~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f  434 (971)
T 2x1g_F          355 HCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECF  434 (971)
T ss_dssp             HHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHH
T ss_pred             HHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHH
Confidence            43311    246788889999888876521        011111    1233444444444321 1              


Q ss_pred             HhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-----CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHH
Q 043676          186 EDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH-----PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPY  260 (446)
Q Consensus       186 ~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~  260 (446)
                      ...|..+..++..++...++..-.    -+++.+...+..     .++..++.++.+++.++.+......     ..++.
T Consensus       435 ~~~R~~~~~~l~~~~~~~~~~~l~----~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-----~~l~~  505 (971)
T 2x1g_F          435 RCYRQDISDTFMYCYDVLNDYILE----ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-----RQIPR  505 (971)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHHHH----HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-----HHHHH
Confidence            135566666776666544322111    112222223322     6788899999999999876553221     22333


Q ss_pred             HHHHh---c--cCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHH
Q 043676          261 LLDML---V--HNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQI  335 (446)
Q Consensus       261 l~~~l---~--~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~  335 (446)
                      ++.++   .  +. ++.+|..++|+++.++..-......+-  .+++.++..+ +  +.++..|+.++.+++........
T Consensus       506 l~~~l~~l~~~d~-~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~  579 (971)
T 2x1g_F          506 LMRVLAEIPYEKL-NVKLLGTALETMGSYCNWLMENPAYIP--PAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLK  579 (971)
T ss_dssp             HHHHHHHSCTTTS-CHHHHHHHHHHHHHTHHHHC----CHH--HHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHhcCcccc-CHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhcc
Confidence            33333   2  34 788999999999999751001111121  3566677666 2  88999999999999976443333


Q ss_pred             HHHHHcCChHHHHhcccC--CCHHHHHHHHHHHHHHHHh
Q 043676          336 KHLVREGCVKPLCDLLLC--SDPEIVTVCLIGLENILKV  372 (446)
Q Consensus       336 ~~l~~~~~i~~L~~ll~~--~~~~~~~~~~~~l~~l~~~  372 (446)
                      .++-  .++..+.+++..  .+.+.+..+++++..++..
T Consensus       580 p~~~--~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~  616 (971)
T 2x1g_F          580 PYAD--PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL  616 (971)
T ss_dssp             HHHH--HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred             ccHH--HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence            3322  256667777776  3578888899999998875

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.39  E-value=8.7e-05  Score=76.25  Aligned_cols=393  Identities=12%  Similarity=0.072  Sum_probs=202.8

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHh-------hcCCCC--hHHHHHHHHHHHHHcCCChhhH---
Q 043676           14 DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEF-------LMREDY--PQLQYEAAWVLINIASGTSENT---   81 (446)
Q Consensus        14 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~l-------l~~~~~--~~~~~~a~~~L~~l~~~~~~~~---   81 (446)
                      +++..+..|+.++..+............+. .+++.++.+       +...+.  ++.....++.+..++.......   
T Consensus       256 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~  334 (971)
T 2x1g_F          256 DENELAESCLKTMVNIIIQPDCHNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSG  334 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSGGGGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHcCccccccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457888999999999887531111111221 223443332       233331  2666677777777764222211   


Q ss_pred             ---------HHHHhcCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCC---------ChHHHHHHHH--cCChHHHH
Q 043676           82 ---------NVVIDHGAVPIFVKLLSS-----PSDDVREQAVWALGNVAGD---------SPRCRDLVLS--QGALIPLL  136 (446)
Q Consensus        82 ---------~~~~~~~~i~~L~~~L~~-----~~~~v~~~a~~~l~~l~~~---------~~~~~~~~~~--~~~i~~l~  136 (446)
                               ..+  ...++.++.+...     .++++...+++.+..++..         .+........  ...++.++
T Consensus       335 ~~~~~~~~~~~l--~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~  412 (971)
T 2x1g_F          335 ITSADPELSILV--HRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILV  412 (971)
T ss_dssp             HHTCCHHHHHHH--HHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH
T ss_pred             hccCcccccHHH--HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence                     111  1345566665533     4678899999998887641         1111111111  12344444


Q ss_pred             HHhccccc--------------hhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcC-----CCHhHHHHHHHHHH
Q 043676          137 AELNEHAK--------------LSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHS-----NDEDVLTYACWSLS  197 (446)
Q Consensus       137 ~~l~~~~~--------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~-----~~~~v~~~~~~~l~  197 (446)
                      ..+....+              ...+..+..++..++...+   ......+++.+...+..     .+...++.++.+++
T Consensus       413 ~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~  489 (971)
T 2x1g_F          413 RKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN---DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQ  489 (971)
T ss_dssp             HHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT---THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred             HHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Confidence            44421111              1355666777777765432   22334444555555543     57889999999999


Q ss_pred             HhccCCcHHHHHHHHhCcHHHHHHhcC-CCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHH
Q 043676          198 YLADGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKE  276 (446)
Q Consensus       198 ~l~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~  276 (446)
                      .++..........+. .+++.+..+.. +.++.++..++++++.++..-....+.+  ..+++.++..+ +   +.++..
T Consensus       490 ~iae~~~~~~~~~l~-~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l-~---~~v~~~  562 (971)
T 2x1g_F          490 SVAEHFGGEEKRQIP-RLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAINLLVRGL-N---SSMSAQ  562 (971)
T ss_dssp             HTTTC------CHHH-HHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHHHHHHHH-H---SSCHHH
T ss_pred             HHHhhcChhhhHHHH-HHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHh-C---hHHHHH
Confidence            998765533221111 23332322221 3477899999999999885322111111  12455566666 2   478999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--CcchHHHHHHHHHHhccCCC-HHHHHHHHHcCChHHHH----h
Q 043676          277 ISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA--EFDTKKEAAWAISNATSGGT-QEQIKHLVREGCVKPLC----D  349 (446)
Q Consensus       277 a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~-~~~~~~l~~~~~i~~L~----~  349 (446)
                      |++++.+++...........+ .++..+..++..+  +.+.+..+..+++.++.... .+....+..  +++.+.    .
T Consensus       563 A~~al~~l~~~~~~~l~p~~~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~--ll~~l~~~l~~  639 (971)
T 2x1g_F          563 ATLGLKELCRDCQLQLKPYAD-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDI--IVSPCFEELQA  639 (971)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccHH-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHH--HHHHHHHHHHH
Confidence            999999998755544444433 5777777888774  56888999999999876432 233333222  333333    3


Q ss_pred             cccCC--CHHHHH---HHHHHHHHHHHhhhhhhcccCCCC--ccchHHHHHHHhChHHHHHHhhcC--CCHHHHHHHHHH
Q 043676          350 LLLCS--DPEIVT---VCLIGLENILKVGEAERNMGTTIG--DVNQYAQFVEEAGGLEKIENLQSH--DNNEIHEKSVKI  420 (446)
Q Consensus       350 ll~~~--~~~~~~---~~~~~l~~l~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~l~~l~~~--~~~~v~~~a~~~  420 (446)
                      +++..  +++-+.   .+++.|..++..-......... +  ...++...+  ...++.+..+...  .+.++.+.+..+
T Consensus       640 ~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~-~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~v~e~~~~~  716 (971)
T 2x1g_F          640 ICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQAT-DQPIVQPVLLVM--QRTMPIFKRIAEMWVEEIDVLEAACSA  716 (971)
T ss_dssp             HHTC---CHHHHHHHHHHHHHHHHHHHHHTC--------------CCHHHH--HTTHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccc-cccCCCchHHHH--HHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            33333  332233   3444455544432211000000 0  001112222  2345555555432  366888888888


Q ss_pred             HHHhc
Q 043676          421 FKTYW  425 (446)
Q Consensus       421 l~~~~  425 (446)
                      +.+..
T Consensus       717 ~~~~~  721 (971)
T 2x1g_F          717 MKHAI  721 (971)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87743

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.38  E-value=6.8e-06  Score=70.24  Aligned_cols=187  Identities=12%  Similarity=0.088  Sum_probs=140.7

Q ss_pred             HHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHH-H
Q 043676          219 LVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVI-D  297 (446)
Q Consensus       219 l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~  297 (446)
                      ++..|.+.+.+.+..++.-|..+...+......++..+++..|+.+..+. +...+..++.++.++... .....-++ .
T Consensus       123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~-v~Gm~gvvs~  200 (339)
T 3dad_A          123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLF-VDGMLGVVAH  200 (339)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTS-HHHHHHHHHC
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhc-cccccchhCC
Confidence            33444456677788899999996666788899999999999999999998 999999999999999764 45555555 3


Q ss_pred             cCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHH-------H-c--CChHHHHhccc---CCCHHHHHHHHH
Q 043676          298 AGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLV-------R-E--GCVKPLCDLLL---CSDPEIVTVCLI  364 (446)
Q Consensus       298 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~-------~-~--~~i~~L~~ll~---~~~~~~~~~~~~  364 (446)
                      ...+..+..++.+.+..+.+.|+..|..++...+ .....+.       . .  ..++.|+.+|+   ..|.+++.++..
T Consensus       201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se-~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt  279 (339)
T 3dad_A          201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSE-NNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT  279 (339)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCc-ccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence            4578888888888888999999999999977642 1111111       1 1  23778899997   678999999999


Q ss_pred             HHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCC--CHHHHH
Q 043676          365 GLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHD--NNEIHE  415 (446)
Q Consensus       365 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~--~~~v~~  415 (446)
                      .|..++...+....       ...+...+.+.|.-..+.+.+...  ++++++
T Consensus       280 LIN~lL~~apd~d~-------~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~  325 (339)
T 3dad_A          280 LINKTLAALPDQDS-------FYDVTDALEQQGMEALVQRHLGTAGTDVDLRT  325 (339)
T ss_dssp             HHHHHHHHCSSHHH-------HHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred             HHHHHHhcCCChhH-------HHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence            99999887664331       123677788888777788877665  566543

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.35  E-value=5.2e-05  Score=75.50  Aligned_cols=299  Identities=15%  Similarity=0.156  Sum_probs=203.3

Q ss_pred             HHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC---hHHHHHH
Q 043676           50 FVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDS---PRCRDLV  126 (446)
Q Consensus        50 L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~---~~~~~~~  126 (446)
                      +++-+...+ ..-+..++..+.++........  .+..+++..+.+.+.+....  +.|+.++..+|...   +.....+
T Consensus        19 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~   93 (986)
T 2iw3_A           19 LFQKLSVAT-ADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI   93 (986)
T ss_dssp             HHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred             HHhhccccc-hhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch
Confidence            444455443 3335566667777655221111  11125677888888764333  99999999999433   2222233


Q ss_pred             HHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCC-CHhHHHHHHHHHHHhccCCcH
Q 043676          127 LSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSN-DEDVLTYACWSLSYLADGTND  205 (446)
Q Consensus       127 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~~~~~l~~l~~~~~~  205 (446)
                      .  +.++.++..+ .+....++..|-.+...+...-+.   .....++|.|...+.+. .+..+..++.++..++...+.
T Consensus        94 ~--~~~~~~~~~~-~dk~~~v~~aa~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~  167 (986)
T 2iw3_A           94 V--QLVPAICTNA-GNKDKEIQSVASETLISIVNAVNP---VAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKD  167 (986)
T ss_dssp             H--TTHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSCG---GGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHH
T ss_pred             H--HHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHH
Confidence            3  4678888887 566778888888888877766422   22377889999998766 699999999999999976665


Q ss_pred             HHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcC--CchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHH
Q 043676          206 KIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTG--DDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISN  283 (446)
Q Consensus       206 ~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~  283 (446)
                      ... ..-.+++|.+-..+-+..+++...|..++..+|..  |.+.      ...+|.|++.+.++ +.  ..+++..|+.
T Consensus       168 ~~~-~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p-~~--~~~~~~~l~~  237 (986)
T 2iw3_A          168 QVA-LRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADP-TE--VPETVHLLGA  237 (986)
T ss_dssp             HHH-HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCT-TH--HHHHHHHHTT
T ss_pred             HHH-HhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcCh-hh--hHHHHHHhhc
Confidence            443 33348899999999999999999999999988852  2222      23689999999877 33  3344444443


Q ss_pred             Hhc---CCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccC-CCHHHHHHHHHcCChHHHHhcccC-CCHHH
Q 043676          284 ITA---GNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSG-GTQEQIKHLVREGCVKPLCDLLLC-SDPEI  358 (446)
Q Consensus       284 l~~---~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~-~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~  358 (446)
                      -+.   -+.....     =++|.|.+-|......++++++-.+.||+.- .++.....|+. ..+|.+....+. .+|++
T Consensus       238 ~tfv~~v~~~~l~-----~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe~  311 (986)
T 2iw3_A          238 TTFVAEVTPATLS-----IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPEA  311 (986)
T ss_dssp             CCCCSCCCHHHHH-----HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHHH
T ss_pred             CeeEeeecchhHH-----HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHHH
Confidence            332   1222111     1567788888888889999999999999874 35555555443 477778776654 68999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 043676          359 VTVCLIGLENILKVGEA  375 (446)
Q Consensus       359 ~~~~~~~l~~l~~~~~~  375 (446)
                      |..+-.++..+.+.+..
T Consensus       312 r~~~~~a~~~l~~~~~~  328 (986)
T 2iw3_A          312 REVTLRALKTLRRVGNV  328 (986)
T ss_dssp             HHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhhcc
Confidence            99999999998877554

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=98.32  E-value=0.00033  Score=71.38  Aligned_cols=341  Identities=10%  Similarity=0.084  Sum_probs=184.1

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHH-HhhcCCCChHHHHHHHHHHHHHcCCC---h--hhHHHHHh
Q 043676           13 SDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFV-EFLMREDYPQLQYEAAWVLINIASGT---S--ENTNVVID   86 (446)
Q Consensus        13 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~-~ll~~~~~~~~~~~a~~~L~~l~~~~---~--~~~~~~~~   86 (446)
                      +.++.+...++.++..+.+-   -+...+.+.+.++.+. .++.  + ++++..|+.||..+....   +  +....+..
T Consensus       206 ~~~~~l~~~~L~~l~s~l~W---I~i~~i~~~~ll~~l~~~~L~--~-~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~  279 (1023)
T 4hat_C          206 GASSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL  279 (1023)
T ss_dssp             CSSCHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHh---CCHHHhcchhHHHHHHHHHcC--C-HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence            45677788888999887763   3466788889999999 8875  3 789999999999998722   2  12211110


Q ss_pred             --cCChHHH--------------HHhhCCCCHHHHHHHHHHHHHhhC-------CChHHHHHHHHcCChHHHHHHhcccc
Q 043676           87 --HGAVPIF--------------VKLLSSPSDDVREQAVWALGNVAG-------DSPRCRDLVLSQGALIPLLAELNEHA  143 (446)
Q Consensus        87 --~~~i~~L--------------~~~L~~~~~~v~~~a~~~l~~l~~-------~~~~~~~~~~~~~~i~~l~~~l~~~~  143 (446)
                        .+.+..+              ...-...+.+.....+.++..+..       ..+..+..+.  .++..++..- ..+
T Consensus       280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~-~~~  356 (1023)
T 4hat_C          280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIE  356 (1023)
T ss_dssp             HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHT-TSS
T ss_pred             HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhh-CCC
Confidence              0111111              111122345555555666554442       1122122211  1122333332 445


Q ss_pred             chhHHHHHHHHHHHhhcCCCC--CChhhhhhhH----HHHHHhhcCCC--------------------Hh-HHHHHH-HH
Q 043676          144 KLSMLRNATRTLSNFCRGKPE--PPFDQVRPAL----PALAQLVHSND--------------------ED-VLTYAC-WS  195 (446)
Q Consensus       144 ~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~~----~~l~~ll~~~~--------------------~~-v~~~~~-~~  195 (446)
                      +.++...++..-..++.+-..  .........+    +.++.-+.-+.                    ++ -..... .+
T Consensus       357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~  436 (1023)
T 4hat_C          357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV  436 (1023)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence            677767776665555543211  1222233333    33333333211                    00 111011 22


Q ss_pred             HHHhccCCc-HHHHHHHHhCcHHHHHHhcCC--CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhcc-----
Q 043676          196 LSYLADGTN-DKIQAVIEAGVCPRLVELLGH--PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVH-----  267 (446)
Q Consensus       196 l~~l~~~~~-~~~~~~~~~~~~~~l~~ll~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~-----  267 (446)
                      |..++.-.. +...     -+++.+...+..  .++..++.++++++.++.+..+....-.-..+++.|+.++.+     
T Consensus       437 L~~l~~l~~~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d  511 (1023)
T 4hat_C          437 LVYLTHLNVIDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKD  511 (1023)
T ss_dssp             HHHHHHHCHHHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred             HHHHhccCHHHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCc
Confidence            222221111 1111     123334444443  578899999999999998765432222223467778887763     


Q ss_pred             CchHHHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHH--------
Q 043676          268 NHEEIIKKEISWIISNITA---GNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIK--------  336 (446)
Q Consensus       268 ~~~~~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~--------  336 (446)
                      + ...++..++|+++.++.   .+++...     .++..|++.+.+.++.++..|++++.+++..+......        
T Consensus       512 ~-k~~v~~t~~~~lGry~~wl~~~~~~L~-----~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p  585 (1023)
T 4hat_C          512 N-KAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEP  585 (1023)
T ss_dssp             H-HHHHHHHHHHHHHTCHHHHHHCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSC
T ss_pred             c-hHHHHHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCch
Confidence            3 45566788899998865   2333222     35556677776677889999999999998753322210        


Q ss_pred             HHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhh
Q 043676          337 HLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEA  375 (446)
Q Consensus       337 ~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~  375 (446)
                      ++-  .++..+......-+++-+..+.+++..+++..+.
T Consensus       586 ~~~--~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~  622 (1023)
T 4hat_C          586 FIQ--TIIRDIQKTTADLQPQQVHTFYKACGIIISEERS  622 (1023)
T ss_dssp             HHH--HHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCS
T ss_pred             hHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Confidence            111  1233333444445666667788888888876543

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.27  E-value=3.8e-05  Score=65.69  Aligned_cols=187  Identities=13%  Similarity=0.116  Sum_probs=136.2

Q ss_pred             HHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHH
Q 043676          174 LPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCII  253 (446)
Q Consensus       174 ~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~  253 (446)
                      ...++.-|.+.+.+.+..++.-|..+...+......++..+++..|+......+...+..++.++.++..+....-..+-
T Consensus       120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs  199 (339)
T 3dad_A          120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA  199 (339)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence            44566667778888899999999986666677888899999999999999999999999999999999986443322222


Q ss_pred             hcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHH--------c--CChHHHHHHHh---cCCcchHHHHH
Q 043676          254 NHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVID--------A--GLIRPIVNLLQ---NAEFDTKKEAA  320 (446)
Q Consensus       254 ~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~--------~--~~i~~L~~ll~---~~~~~v~~~a~  320 (446)
                      ...++..+..++.+. ...+.+.|+..|-.++..++.....+.+        .  ..++.|+.+++   +.+.+++..|.
T Consensus       200 ~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am  278 (339)
T 3dad_A          200 HSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV  278 (339)
T ss_dssp             CHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence            556888999999876 8899999999999988644322222221        1  24889999997   67889999999


Q ss_pred             HHHHHhccCCC-HH----HHHHHHHcCChHHHHhcccCC--CHHHHHH
Q 043676          321 WAISNATSGGT-QE----QIKHLVREGCVKPLCDLLLCS--DPEIVTV  361 (446)
Q Consensus       321 ~aL~~l~~~~~-~~----~~~~l~~~~~i~~L~~ll~~~--~~~~~~~  361 (446)
                      ..+..+..+.. .+    ....+.+.|.-..+...++..  +++++..
T Consensus       279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            88877766533 33    233334455445566667654  6666554

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=98.22  E-value=0.00055  Score=70.26  Aligned_cols=348  Identities=11%  Similarity=0.063  Sum_probs=182.6

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHh------cCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCCh
Q 043676            5 PALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQ------SGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTS   78 (446)
Q Consensus         5 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~------~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~   78 (446)
                      +.+.+.+  +++..+..|+.++..+......+.....+.      -+..+.+...+...+ .+.....++.+..++...+
T Consensus       244 ~~l~~~l--~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d-~~~~~~~~~l~~~~~~~~~  320 (963)
T 2x19_B          244 QAAFAAL--QDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGD-METSHGICRIAVALGENHS  320 (963)
T ss_dssp             HHHHHHT--TSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHh--CCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHhH
Confidence            3344444  356788899999999887531111111111      111222222334445 4555666677766654111


Q ss_pred             hh-------HHHHHhcCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCC--------hHHHHHHHH--cCChHHHH
Q 043676           79 EN-------TNVVIDHGAVPIFVKLLSS-----PSDDVREQAVWALGNVAGDS--------PRCRDLVLS--QGALIPLL  136 (446)
Q Consensus        79 ~~-------~~~~~~~~~i~~L~~~L~~-----~~~~v~~~a~~~l~~l~~~~--------~~~~~~~~~--~~~i~~l~  136 (446)
                      ..       ...+  ...++.++.+...     .++.+...++..+..++...        +.....+..  ...++.++
T Consensus       321 ~~l~~~~~~~~~~--~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll  398 (963)
T 2x19_B          321 RALLDQVEHWQSF--LALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLL  398 (963)
T ss_dssp             HHHHHCGGGHHHH--HHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCccchHHH--HHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            11       1111  1345666666554     34566777777777766411        111111110  01233444


Q ss_pred             HHhccccc--------------hhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhh----cCCCHhHHHHHHHHHHH
Q 043676          137 AELNEHAK--------------LSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLV----HSNDEDVLTYACWSLSY  198 (446)
Q Consensus       137 ~~l~~~~~--------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll----~~~~~~v~~~~~~~l~~  198 (446)
                      ..+....+              .+.+..+..+|..++...+   ......+++.+...+    .+.++..++.++.+++.
T Consensus       399 ~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~  475 (963)
T 2x19_B          399 HKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLG---AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQS  475 (963)
T ss_dssp             HHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHH
T ss_pred             HHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence            44421111              0224445555655553221   112233444455555    45678899999999999


Q ss_pred             hccCCcHHHHHHHHhCcHHHHHHhc---CCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHH
Q 043676          199 LADGTNDKIQAVIEAGVCPRLVELL---GHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKK  275 (446)
Q Consensus       199 l~~~~~~~~~~~~~~~~~~~l~~ll---~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~  275 (446)
                      ++........     ..++.++..+   ..+++.++..++++++.++..-.... ..+ ..+++.++..+.+   +.++.
T Consensus       476 i~~~~~~~~~-----~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~~l~~~l~~---~~V~~  545 (963)
T 2x19_B          476 IAETIDVNYS-----DVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVLPLVLHALGN---PELSV  545 (963)
T ss_dssp             HTTSCCSSCC-----SHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHHHHHHHTTC---GGGHH
T ss_pred             HHhhcCchhh-----HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHHHHHHHhCC---chHHH
Confidence            9976442111     2233333332   33567799999999999986322222 222 3688888888854   58999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--CcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhccc-
Q 043676          276 EISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA--EFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLL-  352 (446)
Q Consensus       276 ~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-  352 (446)
                      .|++++.+++...........+ .++..+..++...  +...+..+..+++.++....++......+ .+++.+...+. 
T Consensus       546 ~A~~al~~l~~~~~~~l~p~~~-~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~-~l~~~l~~~l~~  623 (963)
T 2x19_B          546 SSVSTLKKICRECKYDLPPYAA-NIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLH-SLISPYIQQLEK  623 (963)
T ss_dssp             HHHHHHHHHHHHTGGGCTTTHH-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHHHH
Confidence            9999999998633222111111 3455555666653  46788999999999986544333333222 14444444332 


Q ss_pred             ---C-CCHHHHH---HHHHHHHHHHHh
Q 043676          353 ---C-SDPEIVT---VCLIGLENILKV  372 (446)
Q Consensus       353 ---~-~~~~~~~---~~~~~l~~l~~~  372 (446)
                         . .+++.+.   ..+++|..+++.
T Consensus       624 ~~~~~~~~~~~~~~~~~l~~l~~i~~~  650 (963)
T 2x19_B          624 LAEEIPNPSNKLAIVHILGLLSNLFTT  650 (963)
T ss_dssp             HHSSCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence               2 2444444   445555555554

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=98.18  E-value=0.0012  Score=68.36  Aligned_cols=345  Identities=9%  Similarity=0.081  Sum_probs=181.1

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCC--hh---hHHHHHh--
Q 043676           14 DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGT--SE---NTNVVID--   86 (446)
Q Consensus        14 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~--~~---~~~~~~~--   86 (446)
                      +++.++..++.++..+...-   ....+....+++.+.+.+.. + ++++..|+.+|..+....  +.   ....+..  
T Consensus       207 ~~~~~~~~aL~~l~~~l~wi---~~~~~~~~~ll~~l~~~~l~-~-~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~  281 (1049)
T 3m1i_C          207 SSSSLIVATLESLLRYLHWI---PYRYIYETNILELLSTKFMT-S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFF  281 (1049)
T ss_dssp             CCHHHHHHHHHHHHHHTTTS---CTHHHHSSSHHHHHHTHHHH-S-HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhC---CHHHHhhhhHHHHHHHHhCC-C-HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHH
Confidence            45778888999998876642   23445667778877743332 5 799999999999998632  21   1111110  


Q ss_pred             cCChHHHHH-hh-------------CCCCHHHHHHHHHHHHHhhCC-------ChHHHHHHHHcCChHHHHHHhccccch
Q 043676           87 HGAVPIFVK-LL-------------SSPSDDVREQAVWALGNVAGD-------SPRCRDLVLSQGALIPLLAELNEHAKL  145 (446)
Q Consensus        87 ~~~i~~L~~-~L-------------~~~~~~v~~~a~~~l~~l~~~-------~~~~~~~~~~~~~i~~l~~~l~~~~~~  145 (446)
                      .+.+..+.. ++             .+.+.+.....+..+..+...       .+..+..+  ...++.++... ..++.
T Consensus       282 ~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~-~~~d~  358 (1049)
T 3m1i_C          282 QNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLS-KIEER  358 (1049)
T ss_dssp             HHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHH-TSSCH
T ss_pred             HHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHH-cCCcH
Confidence            122222221 11             123344444555555443311       11111111  11344455544 45577


Q ss_pred             hHHHHHHHHHHHhhc----CCCCCC--hhhhhhhHHHHHHhhcCC-------------------CH---hHHHHHHHHHH
Q 043676          146 SMLRNATRTLSNFCR----GKPEPP--FDQVRPALPALAQLVHSN-------------------DE---DVLTYACWSLS  197 (446)
Q Consensus       146 ~~~~~a~~~L~~l~~----~~~~~~--~~~~~~~~~~l~~ll~~~-------------------~~---~v~~~~~~~l~  197 (446)
                      ++...++..+..++.    ......  ......+++.++..+..+                   +.   ..+..+..+|.
T Consensus       359 ~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~  438 (1049)
T 3m1i_C          359 ELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLV  438 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHH
Confidence            788888877777776    321111  112234444444444211                   10   22334555566


Q ss_pred             HhccCCcHHHHHHHHhCcHHHHHHhcC--CCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhcc----CchH
Q 043676          198 YLADGTNDKIQAVIEAGVCPRLVELLG--HPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVH----NHEE  271 (446)
Q Consensus       198 ~l~~~~~~~~~~~~~~~~~~~l~~ll~--~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~----~~~~  271 (446)
                      .++...+...-.    -+.+.+-..+.  ..++..++.++++++.++.........-.-..+++.+..+...    ...+
T Consensus       439 ~l~~~~~~~~l~----~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~  514 (1049)
T 3m1i_C          439 YLTHLNVIDTEE----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKA  514 (1049)
T ss_dssp             HHHHHCHHHHHH----HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHH
T ss_pred             HHHccCHHHHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchH
Confidence            555333321111    12334444444  3577889999999999986544322111112244444443321    1145


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHH--------HHHHHcCC
Q 043676          272 IIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQI--------KHLVREGC  343 (446)
Q Consensus       272 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~--------~~l~~~~~  343 (446)
                      .++..++|+++.++.--......+.  .+++.++..+.+.++.++..|+.++.+++........        .++  ..+
T Consensus       515 ~v~~~~~~~lgry~~~~~~~~~~l~--~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~--~~i  590 (1049)
T 3m1i_C          515 VVASDIMYVVGQYPRFLKAHWNFLR--TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI--QTI  590 (1049)
T ss_dssp             HHHHHHHHHHHHCHHHHHHCHHHHH--HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH--HHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH--HHH
Confidence            5666789999988641111111222  3677788888888899999999999999875332221        111  113


Q ss_pred             hHHHHhcccCCCHHHHHHHHHHHHHHHHhhh
Q 043676          344 VKPLCDLLLCSDPEIVTVCLIGLENILKVGE  374 (446)
Q Consensus       344 i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~  374 (446)
                      +..+..++...+.+-.....+++..++...+
T Consensus       591 l~~l~~~~~~~~~~~~~~~~eai~~ii~~~~  621 (1049)
T 3m1i_C          591 IRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1049)
T ss_dssp             HHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence            3334444555455545666677777765443

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=98.16  E-value=0.002  Score=66.72  Aligned_cols=354  Identities=10%  Similarity=0.093  Sum_probs=189.2

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcC----CCC--Cc-H-----HHHHh--cCCHHHHHHhhcCCCChHHHHHHHHH
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSF----DRN--PP-I-----EKVIQ--SGVVPRFVEFLMREDYPQLQYEAAWV   69 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~----~~~--~~-~-----~~~~~--~~~~~~L~~ll~~~~~~~~~~~a~~~   69 (446)
                      ++.+++.++ .++..+..++..|..+...    ...  .. +     ..+..  ..+++.+...+.+...+.++..++.+
T Consensus       140 l~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~  218 (1049)
T 3m1i_C          140 IPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLES  218 (1049)
T ss_dssp             HHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             HHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            567777776 4555555556666554421    100  00 0     11211  12334445555544437899999999


Q ss_pred             HHHHcCCChhhHHHHHhcCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCC--hH---HHHHHHHcCChHHHHHHh----
Q 043676           70 LINIASGTSENTNVVIDHGAVPIFVK-LLSSPSDDVREQAVWALGNVAGDS--PR---CRDLVLSQGALIPLLAEL----  139 (446)
Q Consensus        70 L~~l~~~~~~~~~~~~~~~~i~~L~~-~L~~~~~~v~~~a~~~l~~l~~~~--~~---~~~~~~~~~~i~~l~~~l----  139 (446)
                      +.+...--+  ...+.+...++.+.. ++  .+++++..|+.++..+....  +.   ....+..  .++.++..+    
T Consensus       219 l~~~l~wi~--~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~--l~~~~l~~l~~si  292 (1049)
T 3m1i_C          219 LLRYLHWIP--YRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL--FFQNTLQQIATSV  292 (1049)
T ss_dssp             HHHHTTTSC--THHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHH--HHHHHHHHHHHHT
T ss_pred             HHHHHhhCC--HHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHH--HHHHHHHHHHHhh
Confidence            988776222  233455666776663 44  37899999999999998542  21   1111111  111122211    


Q ss_pred             -------------ccccchhHHHHHHHHHHHhhcCC------CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhc
Q 043676          140 -------------NEHAKLSMLRNATRTLSNFCRGK------PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLA  200 (446)
Q Consensus       140 -------------~~~~~~~~~~~a~~~L~~l~~~~------~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~  200 (446)
                                   ..+.+.+.....+..+..+....      +.........+++.++.+...++.++...++..+..++
T Consensus       293 ~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~  372 (1049)
T 3m1i_C          293 MPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLV  372 (1049)
T ss_dssp             CCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred             CCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence                         01223444445555554333211      11011223456777777777778888888888877776


Q ss_pred             c----C--CcHHHHHHHHhCcHHHHHHhcCCCCc----------------------cchhHHHHHHHHhhcCCchhhHHH
Q 043676          201 D----G--TNDKIQAVIEAGVCPRLVELLGHPSP----------------------SVLTPALRTVGNIVTGDDFQTQCI  252 (446)
Q Consensus       201 ~----~--~~~~~~~~~~~~~~~~l~~ll~~~~~----------------------~~~~~a~~~l~~l~~~~~~~~~~~  252 (446)
                      .    .  .......++. .+++.++..+..++.                      ..+..+..+|..++...+..... 
T Consensus       373 ~~l~~~~~~~~~~~~~l~-~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~-  450 (1049)
T 3m1i_C          373 ADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEE-  450 (1049)
T ss_dssp             HHHHHSTTCGGGGHHHHH-HHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHH-
T ss_pred             HHHHhchhHHHHHHHHHH-HHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHH-
Confidence            5    2  1112222222 455666666543211                      11224555666665433221111 


Q ss_pred             HhcCChHHHHHHhcc-CchHHHHHHHHHHHHHHhcCCHHH-HHHHHHcCChHHHHHHHhc-----CCcchHHHHHHHHHH
Q 043676          253 INHGAVPYLLDMLVH-NHEEIIKKEISWIISNITAGNREQ-IQAVIDAGLIRPIVNLLQN-----AEFDTKKEAAWAISN  325 (446)
Q Consensus       253 ~~~~~~~~l~~~l~~-~~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~~~~i~~L~~ll~~-----~~~~v~~~a~~aL~~  325 (446)
                         -+.+.+-..+.. ..++..++.++++++.++.+.... ...+.. .+++.+..+...     ..+.++..++++++.
T Consensus       451 ---~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~-~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgr  526 (1049)
T 3m1i_C          451 ---IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQ  526 (1049)
T ss_dssp             ---HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHH-HHHHHHHHHHhhhccccchHHHHHHHHHHHHH
Confidence               123444444542 227788999999999997632221 111111 244555544332     234455568899987


Q ss_pred             hccC--CCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhh
Q 043676          326 ATSG--GTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEA  375 (446)
Q Consensus       326 l~~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~  375 (446)
                      ++..  ..++....     +++.+.+.+.++++.++..|+.++.++++.+..
T Consensus       527 y~~~~~~~~~~l~~-----vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~  573 (1049)
T 3m1i_C          527 YPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCKY  573 (1049)
T ss_dssp             CHHHHHHCHHHHHH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHhHHHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            7542  12222222     577788888888999999999999999986554

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=98.11  E-value=0.001  Score=67.86  Aligned_cols=315  Identities=10%  Similarity=0.094  Sum_probs=177.4

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCC---h-
Q 043676           46 VVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFV-KLLSSPSDDVREQAVWALGNVAGDS---P-  120 (446)
Q Consensus        46 ~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~-~~L~~~~~~v~~~a~~~l~~l~~~~---~-  120 (446)
                      +++.+...+.++..+++...++.++.....-  -....+.+.+.++.+. .++.  +++++..|+.+|..+....   + 
T Consensus       195 I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~W--I~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~  270 (1023)
T 4hat_C          195 IFKLCFQVLEQGASSSLIVATLESLLRYLHW--IPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDN  270 (1023)
T ss_dssp             HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTT--SCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSC
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh--CCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCch
Confidence            4445555565544478888899999998872  2245667788899998 8884  6789999999999998622   2 


Q ss_pred             -HHHHHHHH--cCChHHH-----------HHHh--ccccchhHHHHHHHHHHHhhcCCCCC-----C-hhhhhhhHHHHH
Q 043676          121 -RCRDLVLS--QGALIPL-----------LAEL--NEHAKLSMLRNATRTLSNFCRGKPEP-----P-FDQVRPALPALA  178 (446)
Q Consensus       121 -~~~~~~~~--~~~i~~l-----------~~~l--~~~~~~~~~~~a~~~L~~l~~~~~~~-----~-~~~~~~~~~~l~  178 (446)
                       ...+.+..  .+.+..+           -..+  ....+.+.....+..+..+.......     . ......++..++
T Consensus       271 ~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll  350 (1023)
T 4hat_C          271 DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLI  350 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH
Confidence             12211111  0011111           0111  12235667777777776665543110     0 011122233555


Q ss_pred             HhhcCCCHhHHHHHHHHHHHhccC---C---cHHHHHHHHhCcHHHHHHhcCCCCc------c---c---------hhHH
Q 043676          179 QLVHSNDEDVLTYACWSLSYLADG---T---NDKIQAVIEAGVCPRLVELLGHPSP------S---V---------LTPA  234 (446)
Q Consensus       179 ~ll~~~~~~v~~~~~~~l~~l~~~---~---~~~~~~~~~~~~~~~l~~ll~~~~~------~---~---------~~~a  234 (446)
                      .+...++.++...++..-..++..   .   ......++. .+++.++.-+..++.      +   .         ....
T Consensus       351 ~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~-~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~  429 (1023)
T 4hat_C          351 QLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQL  429 (1023)
T ss_dssp             HHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHH-HHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHH
T ss_pred             HhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH-HHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHH
Confidence            555567888877777766555531   0   111111222 456666666665430      0   0         0011


Q ss_pred             H----HHHHHhhcCCchhhHHHHhcCChHHHHHHhccC-chHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCChHHHHHHH
Q 043676          235 L----RTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHN-HEEIIKKEISWIISNITAGN-REQIQAVIDAGLIRPIVNLL  308 (446)
Q Consensus       235 ~----~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~L~~ll  308 (446)
                      .    .+|..++.-......    .-+++.+.+.+.++ .++..++.++|+++.++.+. ++....++. .+++.|+.++
T Consensus       430 f~~~Rd~L~~l~~l~~~~~~----~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~-~vi~~Ll~l~  504 (1023)
T 4hat_C          430 YKSEREVLVYLTHLNVIDTE----EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLC  504 (1023)
T ss_dssp             HHHHHHHHHHHHHHCHHHHH----HHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHH----HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHH-HHHHHHHHhh
Confidence            1    222222211111110    01233444444432 27899999999999998753 332223332 4788888888


Q ss_pred             hc-----CCcchHHHHHHHHHHhccCC--CHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhh
Q 043676          309 QN-----AEFDTKKEAAWAISNATSGG--TQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEA  375 (446)
Q Consensus       309 ~~-----~~~~v~~~a~~aL~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~  375 (446)
                      .+     ....++..++|+++..+..-  .++....     ++..|.+.+.++++.++..|++++.++++.+..
T Consensus       505 ~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~-----vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~  573 (1023)
T 4hat_C          505 VKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCKY  573 (1023)
T ss_dssp             HHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH
T ss_pred             hccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            64     23346667889998775531  2333222     566778888888899999999999999987654

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=98.11  E-value=0.0011  Score=67.96  Aligned_cols=339  Identities=12%  Similarity=0.082  Sum_probs=186.5

Q ss_pred             cCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhh---CCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCC
Q 043676           55 MREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLL---SSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGA  131 (446)
Q Consensus        55 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L---~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~  131 (446)
                      .+.+ ...++.++++++.++.+-.+..     ...++.++..+   .++++.++..++++++.++..-......  -...
T Consensus       459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~--l~~v  530 (963)
T 2x19_B          459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM--INSV  530 (963)
T ss_dssp             CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH--HTTT
T ss_pred             CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH--HHHH
Confidence            4455 6889999999999997433211     12233333332   3357889999999999998432111111  2357


Q ss_pred             hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCC--CHhHHHHHHHHHHHhccCCc-HHHH
Q 043676          132 LIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSN--DEDVLTYACWSLSYLADGTN-DKIQ  208 (446)
Q Consensus       132 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~v~~~~~~~l~~l~~~~~-~~~~  208 (446)
                      ++.++..+ .+  +.++..|++++.+++...+..-......+++.+..++...  +...+..+..+++.++...+ +...
T Consensus       531 l~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~  607 (963)
T 2x19_B          531 LPLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL  607 (963)
T ss_dssp             HHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence            78888888 33  7899999999999997643222233466667777777753  57889999999999886543 3333


Q ss_pred             HHHHhCcHHHHHHhc----CCC-Cccchh---HHHHHHHHhhcCCc----------------------hhhHHHHhcCCh
Q 043676          209 AVIEAGVCPRLVELL----GHP-SPSVLT---PALRTVGNIVTGDD----------------------FQTQCIINHGAV  258 (446)
Q Consensus       209 ~~~~~~~~~~l~~ll----~~~-~~~~~~---~a~~~l~~l~~~~~----------------------~~~~~~~~~~~~  258 (446)
                      ..++ .+++.+...+    ..+ +++.+.   ..+.+++.+...-.                      ..... +...++
T Consensus       608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  685 (963)
T 2x19_B          608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV-VLQQVF  685 (963)
T ss_dssp             HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH-HHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH-HHHHHH
Confidence            3333 4444444433    222 333333   34444544432111                      00111 122345


Q ss_pred             HHHHHHhcc-CchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHH----Hhc-CCcchHHHHHHHHHHhcc--CC
Q 043676          259 PYLLDMLVH-NHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNL----LQN-AEFDTKKEAAWAISNATS--GG  330 (446)
Q Consensus       259 ~~l~~~l~~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~l----l~~-~~~~v~~~a~~aL~~l~~--~~  330 (446)
                      +.+..++.. ..+..+.+.++.++..++..-.+...     ..++.++..    ... ..+    ..++.+..++.  +.
T Consensus       686 ~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~f~~  756 (963)
T 2x19_B          686 QLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----PMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHIFAH  756 (963)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----GGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-----ccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHhCC
Confidence            555555532 12567888888888887542111101     234443333    222 122    23344444433  21


Q ss_pred             CH---HHHHHHHHcCChHHHHhccc---CCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHH
Q 043676          331 TQ---EQIKHLVREGCVKPLCDLLL---CSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIEN  404 (446)
Q Consensus       331 ~~---~~~~~l~~~~~i~~L~~ll~---~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~  404 (446)
                      ++   .....+.+ ..+..+..++.   ..+|+++......+..++......--.     .+..+..      .++.+..
T Consensus       757 ~~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~-----~~~~~~~------i~~~~~~  824 (963)
T 2x19_B          757 EPAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC-----ERLDVKA------VFQCAVL  824 (963)
T ss_dssp             CTTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC-----TTSCHHH------HHHHHHH
T ss_pred             CcchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC-----CcccHHH------HHHHHHH
Confidence            11   12222111 12333344433   246899999999999999876654210     0000111      1233344


Q ss_pred             hhcCCCHHHHHHHHHHHHHhcCC
Q 043676          405 LQSHDNNEIHEKSVKIFKTYWCG  427 (446)
Q Consensus       405 l~~~~~~~v~~~a~~~l~~~~~~  427 (446)
                      ...+++.++.+.+.+.+..++..
T Consensus       825 ~l~~~~~~~~~~~l~~l~~l~~~  847 (963)
T 2x19_B          825 ALKFPEAPTVKASCGFFTELLPR  847 (963)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHGGG
T ss_pred             HcCCCCHHHHHHHHHHHHHHHhc
Confidence            55688899999999999888753

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.86  E-value=8.2e-05  Score=75.59  Aligned_cols=304  Identities=9%  Similarity=0.017  Sum_probs=167.0

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCC--ChhhHHHHHhcCCh
Q 043676           13 SDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASG--TSENTNVVIDHGAV   90 (446)
Q Consensus        13 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~~i   90 (446)
                      +.++.+...++.++.....-   -....+...+.++.+.+++.+   ++++..|+.||..+...  .++.+..++..=.+
T Consensus       204 ~~~~~l~~~~L~~l~s~i~w---i~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L  277 (980)
T 3ibv_A          204 AKNYGTVGLCLQVYAQWVSW---ININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILNL  277 (980)
T ss_dssp             TTCHHHHHHHHHHHHHHTTT---SCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhh---cCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhH
Confidence            46788889999999988773   446677778889999988875   68999999999999873  34444444432112


Q ss_pred             HHHHHhhC--CCCHHHHHHHHHHHHHhhC------CCh-----HHHHH--HHHcCChHHHHHHhccccchhHHHHHHHHH
Q 043676           91 PIFVKLLS--SPSDDVREQAVWALGNVAG------DSP-----RCRDL--VLSQGALIPLLAELNEHAKLSMLRNATRTL  155 (446)
Q Consensus        91 ~~L~~~L~--~~~~~v~~~a~~~l~~l~~------~~~-----~~~~~--~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L  155 (446)
                      ...+..+.  ..+.++.+..+..+..++.      ..+     +.+..  -.-.+.++.++..+ .+++.++...++..+
T Consensus       278 ~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~Fw  356 (980)
T 3ibv_A          278 NLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPFL  356 (980)
T ss_dssp             HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence            22222222  3666766555555543321      111     11100  11124677777777 556667666666665


Q ss_pred             HHhhcCC---CC--CChhhhhhhHHHH----HHhhcCC------C----------HhHHHHHHHHHHHhccCCcHHHHHH
Q 043676          156 SNFCRGK---PE--PPFDQVRPALPAL----AQLVHSN------D----------EDVLTYACWSLSYLADGTNDKIQAV  210 (446)
Q Consensus       156 ~~l~~~~---~~--~~~~~~~~~~~~l----~~ll~~~------~----------~~v~~~~~~~l~~l~~~~~~~~~~~  210 (446)
                      ..+....   +.  .........++.|    +.-++-+      +          .+.|......+..++.-.++.....
T Consensus       357 ~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~  436 (980)
T 3ibv_A          357 SDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSY  436 (980)
T ss_dssp             HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence            5544321   11  1112223333333    3333311      1          1344444422323332233222210


Q ss_pred             HHhCcHHHHHHhcC---CCCccchhHHHHHHHHhhcCCchhhHHHH-hc----CChHHHHHHhc-----cCchHHHHHHH
Q 043676          211 IEAGVCPRLVELLG---HPSPSVLTPALRTVGNIVTGDDFQTQCII-NH----GAVPYLLDMLV-----HNHEEIIKKEI  277 (446)
Q Consensus       211 ~~~~~~~~l~~ll~---~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~----~~~~~l~~~l~-----~~~~~~v~~~a  277 (446)
                      .-.-+.+.+...+.   +.++..++.++.+++.++.+......... ..    .+++.+..++.     .+ .+.++..+
T Consensus       437 ~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~~~~  515 (980)
T 3ibv_A          437 MYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQLLY  515 (980)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHHHHH
Confidence            10011222333342   24688899999999999876543221110 01    13444555544     45 78999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc------CCcchHHHHHHHHHHhccCC
Q 043676          278 SWIISNITAGNREQIQAVIDAGLIRPIVNLLQN------AEFDTKKEAAWAISNATSGG  330 (446)
Q Consensus       278 ~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~------~~~~v~~~a~~aL~~l~~~~  330 (446)
                      +++++..+.--..      ....++.++..+-+      .+..++..|+.++.+++...
T Consensus       516 ~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~  568 (980)
T 3ibv_A          516 MEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSI  568 (980)
T ss_dssp             HHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHh
Confidence            9999998762110      12355555555544      46789999999999998754

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.80  E-value=0.00065  Score=69.07  Aligned_cols=308  Identities=9%  Similarity=0.001  Sum_probs=169.5

Q ss_pred             CCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC--hHHHHHHHHcCChHH
Q 043676           57 EDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDS--PRCRDLVLSQGALIP  134 (446)
Q Consensus        57 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~--~~~~~~~~~~~~i~~  134 (446)
                      .+ +.++..++.++.....-  -....+++.+.++.+.+++.+  ++++..|+.+|..+....  +..+..++..=.+..
T Consensus       205 ~~-~~l~~~~L~~l~s~i~w--i~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~  279 (980)
T 3ibv_A          205 KN-YGTVGLCLQVYAQWVSW--ININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNL  279 (980)
T ss_dssp             TC-HHHHHHHHHHHHHHTTT--SCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             CC-HHHHHHHHHHHHHHHhh--cCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHH
Confidence            56 78999999999999872  223455667788888888865  899999999999998433  333322222101111


Q ss_pred             HHHHhcc-ccchhHHHHHHHHHHHhh------cCCCC-CC-------hhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHh
Q 043676          135 LLAELNE-HAKLSMLRNATRTLSNFC------RGKPE-PP-------FDQVRPALPALAQLVHSNDEDVLTYACWSLSYL  199 (446)
Q Consensus       135 l~~~l~~-~~~~~~~~~a~~~L~~l~------~~~~~-~~-------~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l  199 (446)
                      .+..+.. ..|.+..+..+..+..++      ...+. ..       .....++++.+..++.+++.++...++..+..+
T Consensus       280 ~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~  359 (980)
T 3ibv_A          280 FFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDL  359 (980)
T ss_dssp             HHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHH
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence            1211211 355665554444443221      22121 01       133467888999999998888888777776655


Q ss_pred             ccC---------CcHHHHHHHHhCcHHHHHHhcCCCCc----------------cchhHHHHHHHHhhcCCchhhHHHHh
Q 043676          200 ADG---------TNDKIQAVIEAGVCPRLVELLGHPSP----------------SVLTPALRTVGNIVTGDDFQTQCIIN  254 (446)
Q Consensus       200 ~~~---------~~~~~~~~~~~~~~~~l~~ll~~~~~----------------~~~~~a~~~l~~l~~~~~~~~~~~~~  254 (446)
                      ...         -......++. .+++.++.-+..++.                +.|......+..++.-.+...-..+-
T Consensus       360 l~~~~~~~~~~~~~~~~~~~l~-~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~  438 (980)
T 3ibv_A          360 LVSLRKESSSKELSASLKEFLK-SLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMY  438 (980)
T ss_dssp             HHHHHHHTTSCCCCHHHHHHHH-HHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHhccccccccHHHHHHHH-HHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence            421         1122222222 455556666655321                12322222222222212221111000


Q ss_pred             cCChHHHHHHhc---cCchHHHHHHHHHHHHHHhcCCHHHHHHHH-Hc----CChHHHHHHHh-----cCCcchHHHHHH
Q 043676          255 HGAVPYLLDMLV---HNHEEIIKKEISWIISNITAGNREQIQAVI-DA----GLIRPIVNLLQ-----NAEFDTKKEAAW  321 (446)
Q Consensus       255 ~~~~~~l~~~l~---~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~----~~i~~L~~ll~-----~~~~~v~~~a~~  321 (446)
                      ..+.+.+.+.+.   +. ++..++.++.+++.++.+......... ..    .+++.+..+++     ..++.++..+++
T Consensus       439 ~~i~~~l~~~l~~~~~~-~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~  517 (980)
T 3ibv_A          439 SAITSSLSTAATLSPEN-SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYME  517 (980)
T ss_dssp             HHHHHHHHHHTTSCHHH-HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence            011122223332   23 678889999999999775322111000 01    13455555655     567899999999


Q ss_pred             HHHHhccCCC--HHHHHHHHHcCChHHHHh--cccCCCHHHHHHHHHHHHHHHHhhhhh
Q 043676          322 AISNATSGGT--QEQIKHLVREGCVKPLCD--LLLCSDPEIVTVCLIGLENILKVGEAE  376 (446)
Q Consensus       322 aL~~l~~~~~--~~~~~~l~~~~~i~~L~~--ll~~~~~~~~~~~~~~l~~l~~~~~~~  376 (446)
                      +++..+..-.  ++....     +++.++.  -+.++++.++..|..++.++++.+...
T Consensus       518 ~l~rys~~~~~~~~~l~~-----~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~  571 (980)
T 3ibv_A          518 ILVRYASFFDYESAAIPA-----LIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQ  571 (980)
T ss_dssp             HHHHTGGGGGTCCTTHHH-----HHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHhcCchhHHH-----HHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHH
Confidence            9999876421  111111     3444445  455678899999999999999877653

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.77  E-value=0.0011  Score=57.11  Aligned_cols=191  Identities=9%  Similarity=0.093  Sum_probs=124.6

Q ss_pred             HHHhcCCCCccchhHHHHHHHHhhcCCchhhH--HHH--hcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC-C-----
Q 043676          219 LVELLGHPSPSVLTPALRTVGNIVTGDDFQTQ--CII--NHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG-N-----  288 (446)
Q Consensus       219 l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~--~~~--~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~-~-----  288 (446)
                      +-.-+.+.++..|..|+..+..+....+....  ...  -....+.+...+.+. +..+...++.++..++.. .     
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CC
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            56788999999999999999888764432211  111  123456677788888 999999999999988752 1     


Q ss_pred             HHHHHHHHHcCChHHHHHH-HhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHH
Q 043676          289 REQIQAVIDAGLIRPIVNL-LQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLE  367 (446)
Q Consensus       289 ~~~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~  367 (446)
                      .......+ ..+++.|+.- +.+....++..+..++..++....+.  ..     +++.+...+.+.+|.++..++..|.
T Consensus        93 ~~~~~~~~-~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~--~~-----~~e~l~~~l~~Knpkv~~~~l~~l~  164 (278)
T 4ffb_C           93 NAHNITLI-STWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI--TQ-----SVELVIPFFEKKLPKLIAAAANCVY  164 (278)
T ss_dssp             HHHHHHHH-HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS--HH-----HHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred             cchhHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH--HH-----HHHHHHHHHhccCHHHHHHHHHHHH
Confidence            11111121 2466766653 66677888888988888776532211  11     3466777889999999999999999


Q ss_pred             HHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 043676          368 NILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGRN  429 (446)
Q Consensus       368 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~  429 (446)
                      +++........      ..++...     ..++.+..+..+.+++|++.|..++..+|.--.
T Consensus       165 ~~l~~fg~~~~------~~k~~l~-----~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G  215 (278)
T 4ffb_C          165 ELMAAFGLTNV------NVQTFLP-----ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTG  215 (278)
T ss_dssp             HHHHHHTTTTC------CHHHHHH-----HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHhCCCcC------CchhHHH-----HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence            98875332210      0111111     123456778899999999999999988776433

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.69  E-value=0.0012  Score=55.22  Aligned_cols=183  Identities=15%  Similarity=0.089  Sum_probs=120.5

Q ss_pred             HHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhc----CCchhhHH
Q 043676          176 ALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVT----GDDFQTQC  251 (446)
Q Consensus       176 ~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~----~~~~~~~~  251 (446)
                      .+...+-+.|.+-+..++..|.......+.......+ .+++.+.-.+.+.+..+...++.++..+..    ........
T Consensus        50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lD-ll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~  128 (266)
T 2of3_A           50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE  128 (266)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHH-HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence            4455555667777777777777655443332221111 123333323346677787788877777642    11111111


Q ss_pred             HHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCC
Q 043676          252 IINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA-GNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGG  330 (446)
Q Consensus       252 ~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  330 (446)
                      - ..-++|.++.-+-++ ...+|..+-.++..+.. .++.        .+++.+++-++++++.+|..++..+..+....
T Consensus       129 e-a~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~  198 (266)
T 2of3_A          129 E-VSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYITNA  198 (266)
T ss_dssp             H-HHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence            1 123678999999888 88899888877766654 2222        36777888889999999999999999986532


Q ss_pred             CHHHHHHHHHcCCh---HHHHhcccCCCHHHHHHHHHHHHHHHHhhhh
Q 043676          331 TQEQIKHLVREGCV---KPLCDLLLCSDPEIVTVCLIGLENILKVGEA  375 (446)
Q Consensus       331 ~~~~~~~l~~~~~i---~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~  375 (446)
                      ...      ....+   +.+..++.+.|..++..|+.++..++....+
T Consensus       199 G~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd  240 (266)
T 2of3_A          199 GIS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGD  240 (266)
T ss_dssp             CSG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH
Confidence            211      23468   9999999999999999999999988876544

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.54  E-value=0.0011  Score=57.00  Aligned_cols=187  Identities=14%  Similarity=0.116  Sum_probs=125.8

Q ss_pred             HHHHhccccchhHHHHHHHHHHHhhcCCCCC-----ChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcH----
Q 043676          135 LLAELNEHAKLSMLRNATRTLSNFCRGKPEP-----PFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTND----  205 (446)
Q Consensus       135 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-----~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~----  205 (446)
                      +-..+ .+.+...|..++..+..+....+..     .........+.+...+.+.+..+...++.++..++.....    
T Consensus        14 l~e~l-~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           14 LEERL-TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             HHHHT-TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred             HHHhc-ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            44566 7888999999999998877654211     1122345566777888889999999999999988754221    


Q ss_pred             -HHHHHHHhCcHHHHHH-hcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHH
Q 043676          206 -KIQAVIEAGVCPRLVE-LLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISN  283 (446)
Q Consensus       206 -~~~~~~~~~~~~~l~~-ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~  283 (446)
                       ......-..+++.|+. .+.+....++..+..++..++........      +++.+...+.+. ++.++.+++..|..
T Consensus        93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~------~~e~l~~~l~~K-npkv~~~~l~~l~~  165 (278)
T 4ffb_C           93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ------SVELVIPFFEKK-LPKLIAAAANCVYE  165 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH------HHHHHGGGGGCS-CHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH------HHHHHHHHHhcc-CHHHHHHHHHHHHH
Confidence             1111122356677775 47788888888888888777653322111      245677778888 89999999988888


Q ss_pred             Hhc--CCHH-HHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCC
Q 043676          284 ITA--GNRE-QIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGG  330 (446)
Q Consensus       284 l~~--~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  330 (446)
                      +..  +... .....+. .+++.+..++.+.++.||..|..++..+....
T Consensus       166 ~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~  214 (278)
T 4ffb_C          166 LMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT  214 (278)
T ss_dssp             HHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            764  1110 0111111 35667778889999999999999999887653

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.54  E-value=0.0028  Score=53.07  Aligned_cols=178  Identities=13%  Similarity=0.064  Sum_probs=120.4

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhc---cccchhHHHHHHHHHHHhh----cCCC
Q 043676           91 PIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELN---EHAKLSMLRNATRTLSNFC----RGKP  163 (446)
Q Consensus        91 ~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~----~~~~  163 (446)
                      +.+...|-+.+..-+..++..|.......+.   .+..  .+..+++.+.   .+.+..+...++.+|..+.    ....
T Consensus        49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y  123 (266)
T 2of3_A           49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPR---SLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET  123 (266)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhhChH---HHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence            3455555566777777777777665543332   2211  2333333221   3567888888887777653    3222


Q ss_pred             CCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 043676          164 EPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVT  243 (446)
Q Consensus       164 ~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~  243 (446)
                      .-......-++|.|+.-+.+..+.+|..+-.++..+....+.       ..+++.+..-+++.++..|..++..+..+..
T Consensus       124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~  196 (266)
T 2of3_A          124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYIT  196 (266)
T ss_dssp             CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence            222223467889999999999999999988888776643221       1355778888899999999999999999875


Q ss_pred             CCchhhHHHHhcCCh---HHHHHHhccCchHHHHHHHHHHHHHHhc
Q 043676          244 GDDFQTQCIINHGAV---PYLLDMLVHNHEEIIKKEISWIISNITA  286 (446)
Q Consensus       244 ~~~~~~~~~~~~~~~---~~l~~~l~~~~~~~v~~~a~~~l~~l~~  286 (446)
                      .....     ....+   +.+..++.+. +..||..|..++..+-.
T Consensus       197 ~~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          197 NAGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK  236 (266)
T ss_dssp             HHCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred             hcCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence            33222     23467   9999999998 99999999999987754

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.52  E-value=0.018  Score=58.82  Aligned_cols=298  Identities=12%  Similarity=0.141  Sum_probs=154.9

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHH-HHhhcCCCChHHHHHHHHHHHHHcCCC-hhhHHHHHh--cC
Q 043676           13 SDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRF-VEFLMREDYPQLQYEAAWVLINIASGT-SENTNVVID--HG   88 (446)
Q Consensus        13 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L-~~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~--~~   88 (446)
                      +.++.+...++.++..+.+-   -....+++.+.++.+ ..++.  + ++++..|+.||..+.... ++....+..  ..
T Consensus       218 ~~~~~lv~~~L~~L~~~~sW---I~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~  291 (1073)
T 3gjx_A          218 SQNAPLVHATLETLLRFLNW---IPLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL  291 (1073)
T ss_dssp             CCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHh---cCHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            46778888888999888774   345678888888888 46663  4 789999999999988732 222222211  11


Q ss_pred             ChHHHHHhhC-------------CCCHHHHHHHHHHHHHhhCCChHHHHHHHHc-C-------ChHHHHHHhccccchhH
Q 043676           89 AVPIFVKLLS-------------SPSDDVREQAVWALGNVAGDSPRCRDLVLSQ-G-------ALIPLLAELNEHAKLSM  147 (446)
Q Consensus        89 ~i~~L~~~L~-------------~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~-------~i~~l~~~l~~~~~~~~  147 (446)
                      ++..+..++.             +.+.+....-+.++..+...   ....+... +       ++..++.+- ..++.++
T Consensus       292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~---~~~lIe~~p~~~~~l~~~l~~ll~~s-~~~d~ei  367 (1073)
T 3gjx_A          292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKE---HGQLLEKRLNLREALMEALHYMLLVS-EVEETEI  367 (1073)
T ss_dssp             HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHH---HHHHHHHCGGGHHHHHHHHHHHHHHT-TCSCHHH
T ss_pred             HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHH---HHHHHhcCccchHHHHHHHHHHHHHh-CCCcHHH
Confidence            2222222221             12334444555555554421   11122111 1       122233322 4557777


Q ss_pred             HHHHHHHHHHhhcC----CCC----C-------------ChhhhhhhHHHHHHh----hcCC------------------
Q 043676          148 LRNATRTLSNFCRG----KPE----P-------------PFDQVRPALPALAQL----VHSN------------------  184 (446)
Q Consensus       148 ~~~a~~~L~~l~~~----~~~----~-------------~~~~~~~~~~~l~~l----l~~~------------------  184 (446)
                      ...++..-..+...    .+.    .             .......++..|...    +..+                  
T Consensus       368 ~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~  447 (1073)
T 3gjx_A          368 FKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFM  447 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHH
Confidence            77666554444321    110    0             011123333333332    2211                  


Q ss_pred             -C-H--hHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC--CCccchhHHHHHHHHhhcCCchhhH-HHHhcCC
Q 043676          185 -D-E--DVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLTPALRTVGNIVTGDDFQTQ-CIINHGA  257 (446)
Q Consensus       185 -~-~--~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~--~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~~  257 (446)
                       | .  .+....-.++..++.-.......    -..+.+.+.+..  .++...+.++|+++.++..-.+..+ .++ ..+
T Consensus       448 ~d~~~~~ly~~mrd~L~~lt~l~~~~~~~----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~L-p~v  522 (1073)
T 3gjx_A          448 KDTDSINLYKNMRETLVYLTHLDYVDTEI----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL-VTV  522 (1073)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHH
T ss_pred             hhcchHHHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchH-HHH
Confidence             0 0  01111112223332211111111    123344444443  4578899999999999854433222 222 235


Q ss_pred             hHHHHHHhccCc----hHHHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCC
Q 043676          258 VPYLLDMLVHNH----EEIIKKEISWIISNITA---GNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGG  330 (446)
Q Consensus       258 ~~~l~~~l~~~~----~~~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  330 (446)
                      ++.|+.+..++.    ...++...+|+++..+.   .+++...     .++..+++.+.+.++.++..|+.++..++..+
T Consensus       523 i~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~-----~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C  597 (1073)
T 3gjx_A          523 IKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK-----TVVNKLFEFMHETHDGVQDMACDTFIKIAQKC  597 (1073)
T ss_dssp             HHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            666666664431    22355556688888764   2333222     36677778888889999999999999998754

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.51  E-value=0.018  Score=49.37  Aligned_cols=225  Identities=8%  Similarity=0.038  Sum_probs=155.0

Q ss_pred             hhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcH----HHHHHHH-hCcHHHHHHhcCCCCccchhHHHHHHHHhhcCC
Q 043676          171 RPALPALAQLVHSNDEDVLTYACWSLSYLADGTND----KIQAVIE-AGVCPRLVELLGHPSPSVLTPALRTVGNIVTGD  245 (446)
Q Consensus       171 ~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~----~~~~~~~-~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~  245 (446)
                      .+.+..|+..+..-+.+.+..+..++.++.....+    ....+.. ..++..|+..-  +++++...+-..|...+. .
T Consensus        77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLRecir-~  153 (341)
T 1upk_A           77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECIR-H  153 (341)
T ss_dssp             HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHHT-S
T ss_pred             hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHHHHHH-h
Confidence            46778888888888999999999999998865432    3333332 23333343333  344455555555555554 5


Q ss_pred             chhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcC---ChHHHHHHHhcCCcchHHHHHHH
Q 043676          246 DFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAG---LIRPIVNLLQNAEFDTKKEAAWA  322 (446)
Q Consensus       246 ~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~---~i~~L~~ll~~~~~~v~~~a~~a  322 (446)
                      +...+.++....+-.+.+.++.+ ..++...|..++..+..........++..+   ++.....++.+++.-+|..++..
T Consensus       154 e~la~~iL~~~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKL  232 (341)
T 1upk_A          154 EPLAKIILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL  232 (341)
T ss_dssp             HHHHHHHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence            66777788888888999999998 999999999999998776566666666533   57778889999999999999999


Q ss_pred             HHHhccCC-CHH-HHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhC--h
Q 043676          323 ISNATSGG-TQE-QIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAG--G  398 (446)
Q Consensus       323 L~~l~~~~-~~~-~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~  398 (446)
                      |+.+.... +.. ..+++.+..-+..++.+|.+++..++..|..++.-++....+.          .++..++....  .
T Consensus       233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~----------~~I~~IL~~Nr~kL  302 (341)
T 1upk_A          233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKT----------QPILDILLKNQAKL  302 (341)
T ss_dssp             HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCC----------HHHHHHHHHTHHHH
T ss_pred             HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCC----------hHHHHHHHHHHHHH
Confidence            99997741 111 2233333345888999999999999999999988777654332          23455554332  3


Q ss_pred             HHHHHHhhcCC
Q 043676          399 LEKIENLQSHD  409 (446)
Q Consensus       399 ~~~l~~l~~~~  409 (446)
                      ++.+.++..+.
T Consensus       303 l~fl~~f~~d~  313 (341)
T 1upk_A          303 IEFLSKFQNDR  313 (341)
T ss_dssp             HHHHHHTTTTC
T ss_pred             HHHHHhCCCCC
Confidence            44455555444

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.48  E-value=0.032  Score=56.92  Aligned_cols=311  Identities=12%  Similarity=0.122  Sum_probs=168.4

Q ss_pred             HHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHH-HHhhCCCCHHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 043676           50 FVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIF-VKLLSSPSDDVREQAVWALGNVAGD-SPRCRDLVL  127 (446)
Q Consensus        50 L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L-~~~L~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~  127 (446)
                      +...+..+..+.+...++.+++...+ - -....+++.+.++.+ ..+|  ++++++..|+.+|..+... .++..+.+.
T Consensus       211 l~~iL~~~~~~~lv~~~L~~L~~~~s-W-I~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~  286 (1073)
T 3gjx_A          211 CQFVMENSQNAPLVHATLETLLRFLN-W-IPLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFE  286 (1073)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHTT-T-SCTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHH
T ss_pred             HHHHhcccCCHHHHHHHHHHHHHHHH-h-cCHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHH
Confidence            33444444447888888999999887 2 234567778888887 4676  4678999999999998853 232222221


Q ss_pred             H--cCChHHHHHHh------------ccccchhHHHHHHHHHHHhhcCCC-----CCC-hhhhhhhHHHHHHhhcCCCHh
Q 043676          128 S--QGALIPLLAEL------------NEHAKLSMLRNATRTLSNFCRGKP-----EPP-FDQVRPALPALAQLVHSNDED  187 (446)
Q Consensus       128 ~--~~~i~~l~~~l------------~~~~~~~~~~~a~~~L~~l~~~~~-----~~~-~~~~~~~~~~l~~ll~~~~~~  187 (446)
                      .  ...+..+-.++            ....+.+.....+..+..+.+...     ... ......++..++.+...++.+
T Consensus       287 ~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~e  366 (1073)
T 3gjx_A          287 TLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETE  366 (1073)
T ss_dssp             HHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHH
T ss_pred             HHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHH
Confidence            1  01111111111            012234566666666665554430     000 112223344456666677888


Q ss_pred             HHHHHHHHHHHhccC----C------------------cHHHHHHHH---hCcHHHHHHhcCCCCc----------cchh
Q 043676          188 VLTYACWSLSYLADG----T------------------NDKIQAVIE---AGVCPRLVELLGHPSP----------SVLT  232 (446)
Q Consensus       188 v~~~~~~~l~~l~~~----~------------------~~~~~~~~~---~~~~~~l~~ll~~~~~----------~~~~  232 (446)
                      +...++..-..+...    .                  +.+ ...+.   ..+...++.-+..++.          .+|+
T Consensus       367 i~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~-~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re  445 (1073)
T 3gjx_A          367 IFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPR-RQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVRE  445 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHH-HHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhhccccccccccccccccccchhH-HHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHH
Confidence            887777665554421    0                  011 11111   1333444455544321          0111


Q ss_pred             ------------HHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccC-chHHHHHHHHHHHHHHhcC-CHH-HHHHHHH
Q 043676          233 ------------PALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHN-HEEIIKKEISWIISNITAG-NRE-QIQAVID  297 (446)
Q Consensus       233 ------------~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~v~~~a~~~l~~l~~~-~~~-~~~~~~~  297 (446)
                                  ..-.++..++.-.......+    ..+.+-+.+..+ .++...+.++|+++.++.. .++ ....+.+
T Consensus       446 ~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~  521 (1073)
T 3gjx_A          446 FMKDTDSINLYKNMRETLVYLTHLDYVDTEII----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVT  521 (1073)
T ss_dssp             ECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHH----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred             HHhhcchHHHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHH
Confidence                        11112222222111111111    233444444332 2588899999999999753 332 2233333


Q ss_pred             cCChHHHHHHHhcCC-----cchHHHHHHHHHHhccC--CCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHH
Q 043676          298 AGLIRPIVNLLQNAE-----FDTKKEAAWAISNATSG--GTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENIL  370 (446)
Q Consensus       298 ~~~i~~L~~ll~~~~-----~~v~~~a~~aL~~l~~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~  370 (446)
                        +++.|+.+.....     ..++...+++++.....  ..++..+.     ++..|.+.+.++++.++..|+.++.+++
T Consensus       522 --vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~af~~i~  594 (1073)
T 3gjx_A          522 --VIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACDTFIKIA  594 (1073)
T ss_dssp             --HHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHHHHHHHH
T ss_pred             --HHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence              7777777776542     23455556777765442  12333222     6778888889999999999999999999


Q ss_pred             Hhhhhh
Q 043676          371 KVGEAE  376 (446)
Q Consensus       371 ~~~~~~  376 (446)
                      +.+...
T Consensus       595 ~~C~~~  600 (1073)
T 3gjx_A          595 QKCRRH  600 (1073)
T ss_dssp             HHTGGG
T ss_pred             HHHHHH
Confidence            887664

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=97.44  E-value=0.0093  Score=48.73  Aligned_cols=194  Identities=15%  Similarity=0.091  Sum_probs=124.4

Q ss_pred             CccchhHHHHHHHHhhcCCchhhHHHHhc-CChHHHHH----Hh---ccCc---hHHHHHHHHHHHHHHhcCCHHHHHHH
Q 043676          227 SPSVLTPALRTVGNIVTGDDFQTQCIINH-GAVPYLLD----ML---VHNH---EEIIKKEISWIISNITAGNREQIQAV  295 (446)
Q Consensus       227 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-~~~~~l~~----~l---~~~~---~~~v~~~a~~~l~~l~~~~~~~~~~~  295 (446)
                      +++.|+.|+.-|+.=-...++..-.++.+ |.+..+++    +-   ..+.   ...-|..-+.+|-...+..++.+..+
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~F   93 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAF   93 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHH
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHH
Confidence            45568888777766555445555555533 43333322    21   1110   12223333333333333567888899


Q ss_pred             HHcCChHHHHHHHhcCC-----cchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHH
Q 043676          296 IDAGLIRPIVNLLQNAE-----FDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENIL  370 (446)
Q Consensus       296 ~~~~~i~~L~~ll~~~~-----~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~  370 (446)
                      ++..+.-.|..+++..+     ..+|-.++.+++.+.+.++++...++.+.+++|...+.++.+++-.+..|..++.+++
T Consensus        94 l~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL  173 (268)
T 2fv2_A           94 LAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL  173 (268)
T ss_dssp             HHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence            99998888888887653     4689999999999999999999999999999999999999999999999999999998


Q ss_pred             HhhhhhhcccCCCCccchHHHHHHHhChHHH-HHHhhcCCCHHHHHHHHHHHHHhcC
Q 043676          371 KVGEAERNMGTTIGDVNQYAQFVEEAGGLEK-IENLQSHDNNEIHEKSVKIFKTYWC  426 (446)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-l~~l~~~~~~~v~~~a~~~l~~~~~  426 (446)
                      ..+..-.-...      ...+...-...+.. +..+..++++.+.+....+..++.+
T Consensus       174 ~dd~GL~YiC~------t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsd  224 (268)
T 2fv2_A          174 LDDTGLAYICQ------TYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSD  224 (268)
T ss_dssp             HSHHHHHHHTS------SHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred             ccchhHHHHHc------cHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence            76655431111      01122222223333 3455677788776655444444443

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.36  E-value=0.0012  Score=60.27  Aligned_cols=244  Identities=13%  Similarity=0.087  Sum_probs=157.3

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChh--hHHHHHhcCChHHHHHhh--CC--------CCHHHHHHHHHHHH
Q 043676           46 VVPRFVEFLMREDYPQLQYEAAWVLINIASGTSE--NTNVVIDHGAVPIFVKLL--SS--------PSDDVREQAVWALG  113 (446)
Q Consensus        46 ~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~~i~~L~~~L--~~--------~~~~v~~~a~~~l~  113 (446)
                      +...|+.-|-++. -++|.-|+.+|..+......  .+..-.+....-.++..+  ..        --..||+.|+.+|+
T Consensus       175 fcE~L~~DLFdp~-WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG  253 (800)
T 3oc3_A          175 FFEQISDNLLSYE-WYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS  253 (800)
T ss_dssp             TTHHHHHHTTCSS-HHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence            5566777777888 49999999999998752211  111000112222222222  11        12578999999999


Q ss_pred             HhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHH
Q 043676          114 NVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYAC  193 (446)
Q Consensus       114 ~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~  193 (446)
                      .+ ..-+.-      ..++..++..+ .....+++..++-.|.++ .+--.    ...++++.++..|.+.|++|+..|+
T Consensus       254 aL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL-~DLL~----~Ld~Vv~aVL~GL~D~DDDVRAVAA  320 (800)
T 3oc3_A          254 RI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYL-KEFVE----DKDGLCRKLVSLLSSPDEDIKLLSA  320 (800)
T ss_dssp             HH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHT-GGGCC----CHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHH-HHHHH----HHHHHHHHHHhhcCCcccHHHHHHH
Confidence            98 444431      23344444433 556789999999999999 22111    1688899999999999999999999


Q ss_pred             HHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCc--cchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchH
Q 043676          194 WSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSP--SVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEE  271 (446)
Q Consensus       194 ~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~--~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  271 (446)
                      .+|.-++  .++...     .++..+...|.+-+.  .-....+..|+.|+......   ......+|.+...+.+. -.
T Consensus       321 etLiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHt-IT  389 (800)
T 3oc3_A          321 ELLCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSP-VP  389 (800)
T ss_dssp             HHHTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCS-SH
T ss_pred             HHhhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCC-cH
Confidence            9999999  333333     455667777665322  22344566777777655321   11236889999999999 99


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHH
Q 043676          272 IIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAIS  324 (446)
Q Consensus       272 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~  324 (446)
                      .||..++.++..+.  .....+.+        +.+++-.++++++..+..+..
T Consensus       390 SVR~AVL~TL~tfL--~~~~LRLI--------FQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          390 EVRTSILNMVKNLS--EESIDFLV--------AEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHHHHHHTTTCC--CHHHHHHH--------HHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--hhhHHHHH--------HHHHHhCCcHHHHHHHHHHHH
Confidence            99999999998876  22222222        224555677788877777764

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.34  E-value=0.00088  Score=61.12  Aligned_cols=246  Identities=15%  Similarity=0.104  Sum_probs=157.4

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHc--CChHHHHHHhc--cc-------cchhHHHHHHHHHHH
Q 043676           89 AVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQ--GALIPLLAELN--EH-------AKLSMLRNATRTLSN  157 (446)
Q Consensus        89 ~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~i~~l~~~l~--~~-------~~~~~~~~a~~~L~~  157 (446)
                      ..+.|+.-|-++.+++|-.|+.+|..+..............  ...-.++..+.  +-       .-.++|+.++++|+.
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa  254 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR  254 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence            45677777788999999999999998874322100000001  11222332221  11       124799999999999


Q ss_pred             hhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHH
Q 043676          158 FCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRT  237 (446)
Q Consensus       158 l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~  237 (446)
                      + ..-+..     ..++..++..+....++++..++-.|..+..--..     . .++++.++..|.+.+.+|+..|+.+
T Consensus       255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~-----L-d~Vv~aVL~GL~D~DDDVRAVAAet  322 (800)
T 3oc3_A          255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED-----K-DGLCRKLVSLLSSPDEDIKLLSAEL  322 (800)
T ss_dssp             H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC-----H-HHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH-----H-HHHHHHHHhhcCCcccHHHHHHHHH
Confidence            9 554443     34455555566778899999999999998221111     1 2678889999999999999999999


Q ss_pred             HHHhhcCCchhhHHHHhcCChHHHHHHhccCch-HHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchH
Q 043676          238 VGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHE-EIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTK  316 (446)
Q Consensus       238 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~  316 (446)
                      |..++  .+.....     ++..+.+.|.+-.+ ..-....+..|+.++..++.   .......+|.|..++++.-+.||
T Consensus       323 LiPIA--~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITSVR  392 (800)
T 3oc3_A          323 LCHFP--ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPEVR  392 (800)
T ss_dssp             HTTSC--CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHHHH
T ss_pred             hhhhc--chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHHHH
Confidence            99988  2332322     34556666654312 12223445666666653321   01123689999999999999999


Q ss_pred             HHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHH
Q 043676          317 KEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLE  367 (446)
Q Consensus       317 ~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~  367 (446)
                      ..++.++..+.   .....+.+        +..++-+++++++..+.++-.
T Consensus       393 ~AVL~TL~tfL---~~~~LRLI--------FQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          393 TSILNMVKNLS---EESIDFLV--------AEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHHHTTTCC---CHHHHHHH--------HHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH---hhhHHHHH--------HHHHHhCCcHHHHHHHHHHHH
Confidence            99999998887   23332222        335566778888888777664

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.28  E-value=0.031  Score=47.91  Aligned_cols=201  Identities=12%  Similarity=0.101  Sum_probs=142.6

Q ss_pred             HHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCch----hhHHHHh-cCChHHHHHHhccCchHHHHHHHHHHHH
Q 043676          208 QAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDF----QTQCIIN-HGAVPYLLDMLVHNHEEIIKKEISWIIS  282 (446)
Q Consensus       208 ~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~----~~~~~~~-~~~~~~l~~~l~~~~~~~v~~~a~~~l~  282 (446)
                      +.++..+++..|+..+..=+.+.|..+..++.++......    ....+.. ..++..|+....   ++++-..+...|.
T Consensus        72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe---~~diAl~~G~mLR  148 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE---SPEIALNCGIMLR  148 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG---STTTHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc---cchhHhHHHHHHH
Confidence            3466779999999999888999999999999999875542    3333332 223333333333   3455555555666


Q ss_pred             HHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcC---ChHHHHhcccCCCHHHH
Q 043676          283 NITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREG---CVKPLCDLLLCSDPEIV  359 (446)
Q Consensus       283 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~---~i~~L~~ll~~~~~~~~  359 (446)
                      .++. .+.....+...+.+..+.+.++.++-++...|..++..+... .+.....++..+   +......++.+++.-++
T Consensus       149 ecir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~-Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTk  226 (341)
T 1upk_A          149 ECIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTR-HKLLSAEFLEQHYDRFFSEYEKLLHSENYVTK  226 (341)
T ss_dssp             HHHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHH
T ss_pred             HHHH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhc-cHHHHHHHHHHhHHHHHHHHHHHhcCCcchhH
Confidence            6654 466667778888899999999999999999999999988766 344444444432   46777889999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHH
Q 043676          360 TVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKT  423 (446)
Q Consensus       360 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~  423 (446)
                      ..++..|..++-...+..          ...+.+.+..-+..+..|+.+++..++-.|-.+..-
T Consensus       227 RQSlKLLgelLldr~N~~----------vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKv  280 (341)
T 1upk_A          227 RQSLKLLGELLLDRHNFT----------IMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKV  280 (341)
T ss_dssp             HHHHHHHHHHHHSGGGHH----------HHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCchHHH----------HHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheee
Confidence            999999999987765543          234555555667777788888888887666655443

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=97.27  E-value=0.025  Score=46.25  Aligned_cols=187  Identities=10%  Similarity=0.095  Sum_probs=122.7

Q ss_pred             CHhHHHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHh-------cCCCCcc----ch-hHHHHHHHHhhcCCchhhHH
Q 043676          185 DEDVLTYACWSLSYLADGTNDKIQAVIEA-GVCPRLVEL-------LGHPSPS----VL-TPALRTVGNIVTGDDFQTQC  251 (446)
Q Consensus       185 ~~~v~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~l~~l-------l~~~~~~----~~-~~a~~~l~~l~~~~~~~~~~  251 (446)
                      +++.|+.|+.-|+.=-+.-++..-.+..+ |.+..|++=       +..+.-.    -| ..|+..+..+++ +++.+..
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~~   92 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRSA   92 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHHH
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-CcchhhH
Confidence            45567777666665444334333333332 555554332       2222111    12 345555666666 5667788


Q ss_pred             HHhcCChHHHHHHhccCc----hHHHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHh
Q 043676          252 IINHGAVPYLLDMLVHNH----EEIIKKEISWIISNITA-GNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNA  326 (446)
Q Consensus       252 ~~~~~~~~~l~~~l~~~~----~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  326 (446)
                      ++++++.-.+...|+...    -+.+|-.+.++++.+.. ++++.+.++.+.+++|..++.++.++.-.|..|...+..+
T Consensus        93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI  172 (268)
T 2fv2_A           93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI  172 (268)
T ss_dssp             HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            899988888888876542    35788899999999987 6889999999999999999999999999999999999988


Q ss_pred             ccCCCHHHHHHHHH--------cCChHHHHh-cccCCCHHHHHHHHHHHHHHHHhhh
Q 043676          327 TSGGTQEQIKHLVR--------EGCVKPLCD-LLLCSDPEIVTVCLIGLENILKVGE  374 (446)
Q Consensus       327 ~~~~~~~~~~~l~~--------~~~i~~L~~-ll~~~~~~~~~~~~~~l~~l~~~~~  374 (446)
                      ..  ++....++..        ..++..++. +.+++++.+.+.++.+..++.+...
T Consensus       173 L~--dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~r  227 (268)
T 2fv2_A          173 LL--DDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPR  227 (268)
T ss_dssp             HH--SHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHH
T ss_pred             hc--cchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHH
Confidence            76  3344433322        112333333 3467788888888888777665443

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=97.23  E-value=0.01  Score=53.31  Aligned_cols=248  Identities=13%  Similarity=0.079  Sum_probs=148.4

Q ss_pred             CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHH
Q 043676          100 PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQ  179 (446)
Q Consensus       100 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~  179 (446)
                      +++..+..|...|......-|..++.     ++..++.+. .+.+..+|..|+..|..+|.+      .....+...|++
T Consensus        40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q  107 (507)
T 3u0r_A           40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ  107 (507)
T ss_dssp             SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence            57999999999999999888887666     467899999 788999999999999999987      336788899999


Q ss_pred             hhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcC-CchhhHHHHhcCCh
Q 043676          180 LVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTG-DDFQTQCIINHGAV  258 (446)
Q Consensus       180 ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~~  258 (446)
                      +|+++++.-...+-.+|..+...++.        +.+..+..-+...++.+|+.++..|..-... .......-.+.-++
T Consensus       108 lLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~  179 (507)
T 3u0r_A          108 LLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELIL  179 (507)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHH
T ss_pred             HHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHH
Confidence            99999888888887788777766553        2233333333345778888888777544321 11111122333456


Q ss_pred             HHHHHHhccCchHHHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHh------cCCcchHHHHHHHHHH----hc
Q 043676          259 PYLLDMLVHNHEEIIKKEISWIISNITA-GNREQIQAVIDAGLIRPIVNLLQ------NAEFDTKKEAAWAISN----AT  327 (446)
Q Consensus       259 ~~l~~~l~~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~~~i~~L~~ll~------~~~~~v~~~a~~aL~~----l~  327 (446)
                      ..+.+.|++-...+. ...+..|..+-. .+...++.++     +.+.+...      ..|++.....+.++..    ++
T Consensus       180 ~~ikK~L~DVT~~EF-~L~m~lL~~lkl~~t~~g~qeLv-----~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS  253 (507)
T 3u0r_A          180 TESKKVLEDVTGEEF-VLFMKILSGLKSLQTVSGRQQLV-----ELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFS  253 (507)
T ss_dssp             HHHHHHTTSCCHHHH-HHHHHHHHTSGGGSSHHHHHHHH-----HHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCB
T ss_pred             HHHHHHhccccHHHH-HHHHHHHHhcccccCchHHHHHH-----HHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhc
Confidence            667777755422222 233344444322 3444444332     22333221      1244444444444333    33


Q ss_pred             cCC-CHHHHHHHHHcCChHHHHhcccCC-CHHHHHHHHHHHHHHHHhhh
Q 043676          328 SGG-TQEQIKHLVREGCVKPLCDLLLCS-DPEIVTVCLIGLENILKVGE  374 (446)
Q Consensus       328 ~~~-~~~~~~~l~~~~~i~~L~~ll~~~-~~~~~~~~~~~l~~l~~~~~  374 (446)
                      ... +.....++.+ .++|.+-.+-... .++.+...+.++..+..+..
T Consensus       254 ~~v~StkFv~y~~~-kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~  301 (507)
T 3u0r_A          254 KNVHSTRFVTYFCE-QVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCG  301 (507)
T ss_dssp             TTBCCHHHHHHHHH-HTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCC
T ss_pred             cCCChHHHHHHHHH-hhccchhhccccccchHHHHHHHHHHHHHccCCC
Confidence            322 3445555444 4777665554432 22355555666666555544

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=97.10  E-value=0.00019  Score=59.67  Aligned_cols=64  Identities=14%  Similarity=0.045  Sum_probs=37.2

Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcC
Q 043676            9 AGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHG   88 (446)
Q Consensus         9 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~   88 (446)
                      ++++++++.++..++..+.                   ...+..++++++ +.+|..++..|   .              
T Consensus        57 ~ll~d~~~~VR~~AA~~l~-------------------~~~l~~L~~D~~-~~VR~~aA~~L---~--------------   99 (244)
T 1lrv_A           57 QYLADPFWERRAIAVRYSP-------------------VEALTPLIRDSD-EVVRRAVAYRL---P--------------   99 (244)
T ss_dssp             GGTTCSSHHHHHHHHTTSC-------------------GGGGGGGTTCSS-HHHHHHHHTTS---C--------------
T ss_pred             HHhcCCCHHHHHHHHHhCC-------------------HHHHHHHccCcC-HHHHHHHHHHC---C--------------
Confidence            4456778888887776320                   223455566666 67777766532   0              


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHH
Q 043676           89 AVPIFVKLLSSPSDDVREQAVW  110 (446)
Q Consensus        89 ~i~~L~~~L~~~~~~v~~~a~~  110 (446)
                       .+.|..+++++++.||..++.
T Consensus       100 -~~~L~~ll~D~d~~VR~~aA~  120 (244)
T 1lrv_A          100 -REQLSALMFDEDREVRITVAD  120 (244)
T ss_dssp             -SGGGGGTTTCSCHHHHHHHHH
T ss_pred             -HHHHHHHHcCCCHHHHHHHHH
Confidence             134555566666666665554

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=97.04  E-value=0.00034  Score=58.23  Aligned_cols=88  Identities=18%  Similarity=0.117  Sum_probs=57.5

Q ss_pred             HhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCC
Q 043676           52 EFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGA  131 (446)
Q Consensus        52 ~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~  131 (446)
                      .++.+++ +.++..++..+                  ....+..+++++++.||..++..+.                  
T Consensus        57 ~ll~d~~-~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L~------------------   99 (244)
T 1lrv_A           57 QYLADPF-WERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRLP------------------   99 (244)
T ss_dssp             GGTTCSS-HHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTSC------------------
T ss_pred             HHhcCCC-HHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHCC------------------
Confidence            4557777 89999888843                  1345778889999999999886421                  


Q ss_pred             hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHH
Q 043676          132 LIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACW  194 (446)
Q Consensus       132 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~  194 (446)
                      .+.+..++ .+++..++..++..+   .              .+.+..+++++++.++..+..
T Consensus       100 ~~~L~~ll-~D~d~~VR~~aA~~l---~--------------~~~L~~L~~D~d~~VR~~aA~  144 (244)
T 1lrv_A          100 REQLSALM-FDEDREVRITVADRL---P--------------LEQLEQMAADRDYLVRAYVVQ  144 (244)
T ss_dssp             SGGGGGTT-TCSCHHHHHHHHHHS---C--------------TGGGGGGTTCSSHHHHHHHHH
T ss_pred             HHHHHHHH-cCCCHHHHHHHHHhC---C--------------HHHHHHHHcCCCHHHHHHHHH
Confidence            12333444 677778877777632   1              013445566777777777765

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=96.97  E-value=0.1  Score=44.66  Aligned_cols=154  Identities=12%  Similarity=0.108  Sum_probs=110.3

Q ss_pred             HHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc-CCCHhHHHH
Q 043676          113 GNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH-SNDEDVLTY  191 (446)
Q Consensus       113 ~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~v~~~  191 (446)
                      .++.......-+-+++.+++..+...+ ..++.++.+..+..|...+... ........+.+|.++..++ ++++++...
T Consensus       267 L~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDak-sL~~t~L~e~LPFi~~~i~~h~eDdvvYS  344 (619)
T 3c2g_A          267 LGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAK-ALAKTPLENILPFLLRLIEIHPDDEVIYS  344 (619)
T ss_dssp             HHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCG-GGGTSCCTTHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchH-HHhhccccccchHHHHHhccCCCcceEEe
Confidence            344445556677788889999988888 7889999999999998887664 2233344677888888876 678999999


Q ss_pred             HHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-------CCccchhHHHHHHHHhhcC--------------------
Q 043676          192 ACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH-------PSPSVLTPALRTVGNIVTG--------------------  244 (446)
Q Consensus       192 ~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-------~~~~~~~~a~~~l~~l~~~--------------------  244 (446)
                      ....+.|...+.....+..+..|.+..|...+..       .+..-+..||++++|-...                    
T Consensus       345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~G  424 (619)
T 3c2g_A          345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTAG  424 (619)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCCC
T ss_pred             cchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccCC
Confidence            9999999999988888888888999998887644       2223455566666654321                    


Q ss_pred             --CchhhHHHHhcCChHHHHHHhccC
Q 043676          245 --DDFQTQCIINHGAVPYLLDMLVHN  268 (446)
Q Consensus       245 --~~~~~~~~~~~~~~~~l~~~l~~~  268 (446)
                        ...+...+++..++..++..|+-+
T Consensus       425 ~~EqQQVckFIE~d~LKrLMtCLS~e  450 (619)
T 3c2g_A          425 PNEKQQVCKFIEIDILKKLMSCLSCE  450 (619)
T ss_dssp             HHHHHHHHGGGSHHHHHHHHHHHHCC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccc
Confidence              012233455556777777777543

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=96.88  E-value=0.0076  Score=49.90  Aligned_cols=161  Identities=17%  Similarity=0.139  Sum_probs=108.8

Q ss_pred             chhhHHHHhcCChHHHHHHhcc----------CchHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcCCcc
Q 043676          246 DFQTQCIINHGAVPYLLDMLVH----------NHEEIIKKEISWIISNITAGNREQIQAVID-AGLIRPIVNLLQNAEFD  314 (446)
Q Consensus       246 ~~~~~~~~~~~~~~~l~~~l~~----------~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~  314 (446)
                      ....+.+ ..+++..|+.+|..          ..+......++.+|..+. .+......++. .+.+..+...+.+.++.
T Consensus        34 ~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~~i~~l~~~L~s~~~~  111 (233)
T 2f31_A           34 VSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAVPN  111 (233)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSSHHHHHHTTCCTTSHH
T ss_pred             cHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcHHHHHHHHHhCCCCch
Confidence            3445555 34566666666532          114566777888888885 45666677765 45788888888888999


Q ss_pred             hHHHHHHHHHHhccCCCH----H-HHHHH------HHcCChHHHHhccc-CCCHHHHHHHHHHHHHHHHhhhhhhcccCC
Q 043676          315 TKKEAAWAISNATSGGTQ----E-QIKHL------VREGCVKPLCDLLL-CSDPEIVTVCLIGLENILKVGEAERNMGTT  382 (446)
Q Consensus       315 v~~~a~~aL~~l~~~~~~----~-~~~~l------~~~~~i~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  382 (446)
                      ++..++..|..++...++    + ....+      .+..-...+++.+. +.+.+.+..++..+..++...++...+   
T Consensus       112 ~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R---  188 (233)
T 2f31_A          112 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFR---  188 (233)
T ss_dssp             HHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHH---
T ss_pred             HHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHH---
Confidence            999999888877665321    1 11111      22334666777776 456788888888888888776554321   


Q ss_pred             CCccchHHHHHHHhChHHHHHHhhcCCCHHHHH
Q 043676          383 IGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHE  415 (446)
Q Consensus       383 ~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~  415 (446)
                          ...+..|...|..+.+..+...+++++..
T Consensus       189 ----~~lR~ef~~~Gl~~il~~l~~~~~~~L~~  217 (233)
T 2f31_A          189 ----VHIRSELMRLGLHQVLQELREIENEDMKV  217 (233)
T ss_dssp             ----HHHHHHHHHTTHHHHHHHHHHCCCHHHHH
T ss_pred             ----HHHHHHHHHCChHHHHHHHhccCCHHHHH
Confidence                22577888999999999999888888753

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.85  E-value=0.25  Score=44.58  Aligned_cols=292  Identities=11%  Similarity=0.041  Sum_probs=168.3

Q ss_pred             CCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHH
Q 043676           57 EDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLL  136 (446)
Q Consensus        57 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~  136 (446)
                      ++ +..+..|+..+......-|+..+.     ++..++.+..+.+..+|.+|+..|..+|.+  +....     +...|+
T Consensus        40 g~-~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~k-----iaDvL~  106 (507)
T 3u0r_A           40 GG-TKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPR-----VADILT  106 (507)
T ss_dssp             SC-HHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHH-----HHHHHH
T ss_pred             CC-HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhh-----HHHHHH
Confidence            45 799999999999999878887665     478999999999999999999999999976  22222     356788


Q ss_pred             HHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccC-CcHHHHHHHHhCc
Q 043676          137 AELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADG-TNDKIQAVIEAGV  215 (446)
Q Consensus       137 ~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~-~~~~~~~~~~~~~  215 (446)
                      ++| ...++.-...+-++|..+...++       .+.+..+...+.++++.+|+.++..|..-... ..+....-.+.-+
T Consensus       107 QlL-qtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i  178 (507)
T 3u0r_A          107 QLL-QTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELI  178 (507)
T ss_dssp             HHT-TCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHH
T ss_pred             HHH-hccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHH
Confidence            888 56666656666666666655432       34455555555567899999998888654321 1111111222234


Q ss_pred             HHHHHHhcCCCCccchhHHHHHHHHhhcCC-chhhHHHHhcCChHHHHHHh------ccCchHHHHHHHHHHHHHH----
Q 043676          216 CPRLVELLGHPSPSVLTPALRTVGNIVTGD-DFQTQCIINHGAVPYLLDML------VHNHEEIIKKEISWIISNI----  284 (446)
Q Consensus       216 ~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~~~~l~~~l------~~~~~~~v~~~a~~~l~~l----  284 (446)
                      +..+.+.|.+-...--...+.+|..+-... ....+.     +++.+....      ... +.+.....+.++...    
T Consensus       179 ~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qe-----Lv~ii~eQa~L~~~f~~s-D~e~vdRlI~C~~~ALP~F  252 (507)
T 3u0r_A          179 LTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQ-----LVELVAEQADLEQTFNPS-DPDCVDRLLQCTRQAVPLF  252 (507)
T ss_dssp             HHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHH-----HHHHHHHHHTTTSCCCSS-CHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHH-----HHHHHHHHHhccCCCCCc-CHHHHHHHHHHHHHHHHHh
Confidence            455666665544333334445554443322 222222     233333332      112 333333333333222    


Q ss_pred             hc--CCHHHHHHHHHcCChHHHHHHHhcC-CcchHHHHHHHHHHhccCCC-HHHHHHHHHcCChHHHHhcccCCC-----
Q 043676          285 TA--GNREQIQAVIDAGLIRPIVNLLQNA-EFDTKKEAAWAISNATSGGT-QEQIKHLVREGCVKPLCDLLLCSD-----  355 (446)
Q Consensus       285 ~~--~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~-~~~~~~l~~~~~i~~L~~ll~~~~-----  355 (446)
                      +.  .+.....++.+ .++|.+-.+-... .++.+-..+.++..++.... .+....++. .++..|...+-.+.     
T Consensus       253 S~~v~StkFv~y~~~-kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~-~iy~~L~~ymP~~p~~~~~  330 (507)
T 3u0r_A          253 SKNVHSTRFVTYFCE-QVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLR-KLFDKLLEYMPLPPEEAEN  330 (507)
T ss_dssp             BTTBCCHHHHHHHHH-HTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHH-HHHHHHHTTSCCCC-----
T ss_pred             ccCCChHHHHHHHHH-hhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHH-HHHHHHHHHCCCCcccccc
Confidence            22  35555565555 4777555443322 33478899999999988765 232222221 13444544442211     


Q ss_pred             --------H----HHHHHHHHHHHHHHHhhhhhh
Q 043676          356 --------P----EIVTVCLIGLENILKVGEAER  377 (446)
Q Consensus       356 --------~----~~~~~~~~~l~~l~~~~~~~~  377 (446)
                              |    .-.++.+.++.++....++.-
T Consensus       331 ~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~~l  364 (507)
T 3u0r_A          331 GENAGNEEPKLQFSYVECLLYSFHQLGRKLPDFL  364 (507)
T ss_dssp             ---------CCCHHHHHHHHHHHHHHHTTCTHHH
T ss_pred             cccccccCcccchhHHHHHHHHHHHHhhhChhhh
Confidence                    1    244666777777776655543

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.76  E-value=0.069  Score=43.35  Aligned_cols=145  Identities=15%  Similarity=0.059  Sum_probs=105.2

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHH-hhCCCCHHHHHHHHHHHHHhhC-CChHHH
Q 043676           46 VVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVK-LLSSPSDDVREQAVWALGNVAG-DSPRCR  123 (446)
Q Consensus        46 ~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-~L~~~~~~v~~~a~~~l~~l~~-~~~~~~  123 (446)
                      .++....+.+++. .++|..|+..|+.. ...+         ..++.+.. +-.+++..|++.+..++..++. ..++  
T Consensus        72 ~~~la~~L~~~~~-deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--  138 (240)
T 3l9t_A           72 IKKLAFLAYQSDV-YQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--  138 (240)
T ss_dssp             HHHHHHHHHTCSS-HHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--
T ss_pred             HHHHHHHHHhCcc-hHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--
Confidence            3444555666777 79999999998888 3111         23566666 5567889999999999999884 3332  


Q ss_pred             HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCC
Q 043676          124 DLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGT  203 (446)
Q Consensus       124 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~  203 (446)
                            ..++.+.... .+++..+++.++..+.--+.. + ........++|.+..+..+++.-|+..+.+.|..++...
T Consensus       139 ------~~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~  209 (240)
T 3l9t_A          139 ------KALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF  209 (240)
T ss_dssp             ------TTHHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred             ------HHHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence                  1355666666 889999999998877654433 1 122333567788888888889999999999999999999


Q ss_pred             cHHHHHHHH
Q 043676          204 NDKIQAVIE  212 (446)
Q Consensus       204 ~~~~~~~~~  212 (446)
                      |+....+++
T Consensus       210 Pd~V~~~~~  218 (240)
T 3l9t_A          210 PDLVKIELK  218 (240)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            987776555

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.40  E-value=0.061  Score=43.64  Aligned_cols=143  Identities=10%  Similarity=0.052  Sum_probs=100.3

Q ss_pred             HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHH-hhcCCCHhHHHHHHHHHHHhcc-CCcHHHHHHH
Q 043676          134 PLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQ-LVHSNDEDVLTYACWSLSYLAD-GTNDKIQAVI  211 (446)
Q Consensus       134 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~-ll~~~~~~v~~~~~~~l~~l~~-~~~~~~~~~~  211 (446)
                      .+...|-++...+++..|+..|..+ .        .....++.+.. +..+++..|++.+..++..++. ..++      
T Consensus        74 ~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe------  138 (240)
T 3l9t_A           74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK------  138 (240)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT------
T ss_pred             HHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH------
Confidence            4444444666678998999988877 2        12567788887 5567789999999999998875 3332      


Q ss_pred             HhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHH
Q 043676          212 EAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQ  291 (446)
Q Consensus       212 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~  291 (446)
                        ..++.+.....+++..+|..|.....-.+.. +....  -...+++.+-.+..++ +..||+..+|.|..++..+|+-
T Consensus       139 --~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k~--dp~~ll~iL~~L~~D~-s~yVrKSVan~LrD~SK~~Pd~  212 (240)
T 3l9t_A          139 --KALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFKE--NPNEAIRRIADLKEDV-SEYVRKSVGNALRDISKKFPDL  212 (240)
T ss_dssp             --TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTTT--CHHHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHTTCHHH
T ss_pred             --HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhhc--CHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHhhhCHHH
Confidence              2567788899999999999998876543332 11000  0011344455555566 8999999999999999998987


Q ss_pred             HHHHHH
Q 043676          292 IQAVID  297 (446)
Q Consensus       292 ~~~~~~  297 (446)
                      ...+++
T Consensus       213 V~~~~~  218 (240)
T 3l9t_A          213 VKIELK  218 (240)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776665

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=96.26  E-value=0.022  Score=50.92  Aligned_cols=161  Identities=17%  Similarity=0.136  Sum_probs=111.8

Q ss_pred             CchhhHHHHhcCChHHHHHHhcc----------CchHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcCCc
Q 043676          245 DDFQTQCIINHGAVPYLLDMLVH----------NHEEIIKKEISWIISNITAGNREQIQAVID-AGLIRPIVNLLQNAEF  313 (446)
Q Consensus       245 ~~~~~~~~~~~~~~~~l~~~l~~----------~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~  313 (446)
                      .....+.+. .+++..|+.+|..          ..+......++.||..+. .+......++. ...+..+...+.+..+
T Consensus        99 ~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N~~~G~~~vl~~~~~i~~l~~~L~s~~~  176 (383)
T 3eg5_B           99 PVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAVP  176 (383)
T ss_dssp             CHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-SSHHHHHHHHTCSSHHHHHHHTCCTTSH
T ss_pred             ccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-cchhhHHHHHcChHHHHHHHHHhCCCch
Confidence            345555565 4566777777631          113466777888888885 45666677775 5678889999988899


Q ss_pred             chHHHHHHHHHHhccCCCHH-----HHHHH------HHcCChHHHHhcccC-CCHHHHHHHHHHHHHHHHhhhhhhcccC
Q 043676          314 DTKKEAAWAISNATSGGTQE-----QIKHL------VREGCVKPLCDLLLC-SDPEIVTVCLIGLENILKVGEAERNMGT  381 (446)
Q Consensus       314 ~v~~~a~~aL~~l~~~~~~~-----~~~~l------~~~~~i~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~  381 (446)
                      .++..++..|..++....++     ....+      .+..-...+++.++. .+.+.+..++..+..++...++...+  
T Consensus       177 ~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R--  254 (383)
T 3eg5_B          177 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFR--  254 (383)
T ss_dssp             HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHH--
T ss_pred             HHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHH--
Confidence            99999999998887654311     11111      223447778888876 57788888888888888766554322  


Q ss_pred             CCCccchHHHHHHHhChHHHHHHhhcCCCHHHH
Q 043676          382 TIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIH  414 (446)
Q Consensus       382 ~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~  414 (446)
                           -..+..|...|..+.+..+...+++++.
T Consensus       255 -----~~lR~ef~~~Gl~~il~~lr~~~~~~L~  282 (383)
T 3eg5_B          255 -----VHIRSELMRLGLHQVLQELREIENEDMK  282 (383)
T ss_dssp             -----HHHHHHHHHTTHHHHHHHHTTSCCHHHH
T ss_pred             -----HHHHHHHHHCChHHHHHHHhcCCChhHH
Confidence                 2256788899999999998888888764

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=96.14  E-value=0.29  Score=42.05  Aligned_cols=173  Identities=10%  Similarity=0.065  Sum_probs=105.3

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCC----hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChH
Q 043676           47 VPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGA----VPIFVKLLSS-PSDDVREQAVWALGNVAGDSPR  121 (446)
Q Consensus        47 ~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~----i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~  121 (446)
                      +..+.+++ +-. .+.+.-++..+.-.+. ++.....+.+...    +..+...+.+ ..+..+-.++++++|+..... 
T Consensus       105 l~~l~kil-~WP-~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~-  180 (304)
T 3ebb_A          105 LQILWKAI-NCP-EDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA-  180 (304)
T ss_dssp             HHHHHHHH-TSC-TTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-
T ss_pred             HHHHHHHH-cCC-HHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-
Confidence            45666665 333 4667777788777776 6666665554322    2233444443 456678899999999995544 


Q ss_pred             HHHHHHHcCChHHHHHHhc---cccchhHHHHHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhcC-CCHhHHHHHHHHH
Q 043676          122 CRDLVLSQGALIPLLAELN---EHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLVHS-NDEDVLTYACWSL  196 (446)
Q Consensus       122 ~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~-~~~~v~~~~~~~l  196 (446)
                      .+..+..  ....++..+.   .+.+..++..++..+.|++... ..........++..+..+++. .|.+....++.++
T Consensus       181 g~~~l~~--~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvAL  258 (304)
T 3ebb_A          181 GQKLMMS--QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVAL  258 (304)
T ss_dssp             HHHHHHH--THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             hHHHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            5555554  2344444442   3457788888888888887653 112222333455555566653 4899999999999


Q ss_pred             HHhccCCcHHHHHHHHhCcHHHHHHhcCC
Q 043676          197 SYLADGTNDKIQAVIEAGVCPRLVELLGH  225 (446)
Q Consensus       197 ~~l~~~~~~~~~~~~~~~~~~~l~~ll~~  225 (446)
                      +++...+.+..+.....|+-..+-...+.
T Consensus       259 GtL~~~~~~~~~lak~l~~~~~v~~~~~~  287 (304)
T 3ebb_A          259 GTLISDDSNAVQLAKSLGVDSQIKKYSSV  287 (304)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred             HHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence            99998765444433333544444444443

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=95.92  E-value=0.087  Score=47.20  Aligned_cols=162  Identities=17%  Similarity=0.131  Sum_probs=108.5

Q ss_pred             chhhHHHHhcCChHHHHHHhcc----------CchHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcCCcc
Q 043676          246 DFQTQCIINHGAVPYLLDMLVH----------NHEEIIKKEISWIISNITAGNREQIQAVID-AGLIRPIVNLLQNAEFD  314 (446)
Q Consensus       246 ~~~~~~~~~~~~~~~l~~~l~~----------~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~  314 (446)
                      ....+.+. .+++..|+.+|..          ..+......++.||..+. .+......++. .+.+..+...+.+.++.
T Consensus        38 ~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm-N~~~Gl~~vl~~~~~i~~l~~sL~s~~~~  115 (386)
T 2bnx_A           38 VSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAVPN  115 (386)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-SSHHHHHHHHHSSSHHHHHHHTCCTTSHH
T ss_pred             cHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CCHHHHHHHHcCcHHHHHHHHHhCCCCch
Confidence            34444443 3455556555531          114566778888888885 45666666665 46788888888888899


Q ss_pred             hHHHHHHHHHHhccCCCHH-----HHHH------HHHcCChHHHHhccc-CCCHHHHHHHHHHHHHHHHhhhhhhcccCC
Q 043676          315 TKKEAAWAISNATSGGTQE-----QIKH------LVREGCVKPLCDLLL-CSDPEIVTVCLIGLENILKVGEAERNMGTT  382 (446)
Q Consensus       315 v~~~a~~aL~~l~~~~~~~-----~~~~------l~~~~~i~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  382 (446)
                      ++..++..|..++....++     ....      ..+..-+..+++.+. +.+.+.+..++..+..++...++...+   
T Consensus       116 ~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R---  192 (386)
T 2bnx_A          116 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFR---  192 (386)
T ss_dssp             HHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHH---
T ss_pred             HHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHH---
Confidence            9999988887776654311     1111      112334666777776 556788888898888888876654422   


Q ss_pred             CCccchHHHHHHHhChHHHHHHhhcCCCHHHHHH
Q 043676          383 IGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEK  416 (446)
Q Consensus       383 ~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~  416 (446)
                          ...+..|...|..+.+..+....++++...
T Consensus       193 ----~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q  222 (386)
T 2bnx_A          193 ----VHIRSELMRLGLHQVLQELREIENEDMKVQ  222 (386)
T ss_dssp             ----HHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred             ----HHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence                225788999999999999998888887533

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.58  E-value=0.096  Score=45.02  Aligned_cols=109  Identities=11%  Similarity=0.022  Sum_probs=72.2

Q ss_pred             HHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhc--CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHH--HHH
Q 043676           50 FVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDH--GAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRC--RDL  125 (446)
Q Consensus        50 L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~--~~~  125 (446)
                      +...+.++..+..+..++++++|+.. ++..+..+...  .+++.+...+.+++..++..+..++.|++......  .+.
T Consensus       152 l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~  230 (304)
T 3ebb_A          152 LINLLNPKGKPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG  230 (304)
T ss_dssp             HHHTTCTTSCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH
T ss_pred             HHHhcCCCCChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH
Confidence            33444444346779999999999998 67777776643  34455555666678999999999999998321000  011


Q ss_pred             HHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676          126 VLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG  161 (446)
Q Consensus       126 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  161 (446)
                      .  ...+..+..++....+.+....++-+|+++...
T Consensus       231 ~--~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~  264 (304)
T 3ebb_A          231 K--AQCLSLISTILEVVQDLEATFRLLVALGTLISD  264 (304)
T ss_dssp             H--HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred             H--HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence            0  113344455554556788888899999998865

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=95.25  E-value=3.6  Score=43.19  Aligned_cols=288  Identities=9%  Similarity=0.038  Sum_probs=161.8

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhc-CCCChHHHHHHHHHHHHHcCC-----ChhhHHHHHhcC
Q 043676           15 DNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLM-REDYPQLQYEAAWVLINIASG-----TSENTNVVIDHG   88 (446)
Q Consensus        15 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~~~~~~   88 (446)
                      ++..|..|-..|.++-..  +         .....+...|. .+.++.+|..|+..|.+....     +++.+..+. ..
T Consensus        26 ~~~~r~~Ae~~L~~~~~~--p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir-~~   93 (1204)
T 3a6p_A           26 TQRYRLEALKFCEEFKEK--C---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK-NS   93 (1204)
T ss_dssp             CHHHHHHHHHHHHHHHHH--C---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-HH
T ss_pred             ChHHHHHHHHHHHHHHhC--c---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-HH
Confidence            666777777777765332  1         23444444333 332389999999999987642     234444433 33


Q ss_pred             ChHHHHHhhCC---CCHHHHHHHHHHHHHhhCCC-hHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-C
Q 043676           89 AVPIFVKLLSS---PSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK-P  163 (446)
Q Consensus        89 ~i~~L~~~L~~---~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~  163 (446)
                      +++.+......   .+..++.....++..++... |..     =.+.++.+++.+. . ++.....++.+|..++++. .
T Consensus        94 ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~-----Wp~ll~~L~~~~~-~-~~~~~e~~L~iL~~L~Eev~~  166 (1204)
T 3a6p_A           94 VMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH-----WPDMLIELDTLSK-Q-GETQTELVMFILLRLAEDVVT  166 (1204)
T ss_dssp             HHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT-----CTTHHHHHHHHHH-T-CHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc-----chHHHHHHHHHhc-C-CHHHHHHHHHHHHHHHHHHcc
Confidence            45555443221   45888888888888887321 110     0124566777773 2 4556777888888887652 1


Q ss_pred             CCCh--hh-----------hhhhHHHHHHhhcC-------------------CCHhHHHHHHHHHHHhccCCcHHHHHHH
Q 043676          164 EPPF--DQ-----------VRPALPALAQLVHS-------------------NDEDVLTYACWSLSYLADGTNDKIQAVI  211 (446)
Q Consensus       164 ~~~~--~~-----------~~~~~~~l~~ll~~-------------------~~~~v~~~~~~~l~~l~~~~~~~~~~~~  211 (446)
                      ....  ..           ...+++.+..+++.                   .+..+...++.++.+....-+..  .+.
T Consensus       167 ~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~--~i~  244 (1204)
T 3a6p_A          167 FQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMS--HIT  244 (1204)
T ss_dssp             SCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHH--HHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHH--HHH
Confidence            1110  00           11333444444432                   13456777888887766554421  233


Q ss_pred             HhC--cHHHHHHhcCCCCccchhHHHHHHHHhhcCCc--hhhHHHHhc---CChHHHHHHhc-------cCchHHHHHHH
Q 043676          212 EAG--VCPRLVELLGHPSPSVLTPALRTVGNIVTGDD--FQTQCIINH---GAVPYLLDMLV-------HNHEEIIKKEI  277 (446)
Q Consensus       212 ~~~--~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~---~~~~~l~~~l~-------~~~~~~v~~~a  277 (446)
                      +..  +++.+..++.  +++++..|+.||..+.....  .....++..   ..+..++..+.       +..+.++.+..
T Consensus       245 ~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l  322 (1204)
T 3a6p_A          245 AENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRL  322 (1204)
T ss_dssp             TTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHH
T ss_pred             hccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHH
Confidence            332  6777776665  57789999999999987542  221122211   11234444432       11145666677


Q ss_pred             HHHHHHHhcCCHHHHHHHHH-----------cCChHHHHHHHhcCCcchHHHHHHHHHHhccC
Q 043676          278 SWIISNITAGNREQIQAVID-----------AGLIRPIVNLLQNAEFDTKKEAAWAISNATSG  329 (446)
Q Consensus       278 ~~~l~~l~~~~~~~~~~~~~-----------~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  329 (446)
                      +..+..+..   . ...++.           .++++.++.++.+.+..+-..++.....+...
T Consensus       323 ~~ll~~lg~---~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          323 CQVLCALGN---Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             HHHHHHHHH---H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHH---H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence            777776652   1 222221           13577788888777777777777766666554

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=95.24  E-value=1  Score=40.17  Aligned_cols=153  Identities=12%  Similarity=0.115  Sum_probs=97.5

Q ss_pred             HHHhhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcC-----------CCChHHHHHHHHHHHHHc
Q 043676            7 LVAGVWSDD-NSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMR-----------EDYPQLQYEAAWVLINIA   74 (446)
Q Consensus         7 l~~~l~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~-----------~~~~~~~~~a~~~L~~l~   74 (446)
                      .++.|++.- ..-....+..|+..+...+....+.+. .+++..|+..|..           .+ ...+..+++||..+.
T Consensus        71 yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d-~~~q~~~l~CLkalm  148 (383)
T 3eg5_B           71 YIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYD-SRNQHEIIRCLKAFM  148 (383)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------C-HHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhh-HHHHHHHHHHHHHHh
Confidence            455555542 222223455555444443233456666 5678888888752           12 578899999999998


Q ss_pred             CCChhhHHHHHh-cCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-HH-HHHHH----------HcCChHHHHHHhcc
Q 043676           75 SGTSENTNVVID-HGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP-RC-RDLVL----------SQGALIPLLAELNE  141 (446)
Q Consensus        75 ~~~~~~~~~~~~-~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~-~~-~~~~~----------~~~~i~~l~~~l~~  141 (446)
                      . +......++. ...+..+...+.++++.++..++..|..+|.... .. ...+.          +..-...++..+..
T Consensus       149 N-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~  227 (383)
T 3eg5_B          149 N-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS  227 (383)
T ss_dssp             S-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTST
T ss_pred             c-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHc
Confidence            7 6666666664 4788999999999999999999999999995442 21 22222          22346667777744


Q ss_pred             ccchhHHHHHHHHHHHhhcCC
Q 043676          142 HAKLSMLRNATRTLSNFCRGK  162 (446)
Q Consensus       142 ~~~~~~~~~a~~~L~~l~~~~  162 (446)
                      ..+.+.+..++..+-.+....
T Consensus       228 ~~~~e~~~~~m~lIN~li~~~  248 (383)
T 3eg5_B          228 GTSIALKVGCLQLINALITPA  248 (383)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTC
T ss_pred             cCcHHHHHHHHHHHHHHHcCC
Confidence            456666666666555565554

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=95.20  E-value=0.92  Score=37.32  Aligned_cols=154  Identities=12%  Similarity=0.110  Sum_probs=92.8

Q ss_pred             HHHhhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcC----C------CChHHHHHHHHHHHHHcC
Q 043676            7 LVAGVWSDD-NSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMR----E------DYPQLQYEAAWVLINIAS   75 (446)
Q Consensus         7 l~~~l~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~----~------~~~~~~~~a~~~L~~l~~   75 (446)
                      .++.|++.. +..-...+..|...+...+....+.+ ..+++..|+..|..    .      ...+.+..++.||..+..
T Consensus         5 yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn   83 (233)
T 2f31_A            5 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN   83 (233)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC
Confidence            456666543 22222334444433443323345666 45678888877753    1      125678899999999987


Q ss_pred             CChhhHHHHHh-cCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-HH-HHHHH----------HcCChHHHHHHhccc
Q 043676           76 GTSENTNVVID-HGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP-RC-RDLVL----------SQGALIPLLAELNEH  142 (446)
Q Consensus        76 ~~~~~~~~~~~-~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~-~~-~~~~~----------~~~~i~~l~~~l~~~  142 (446)
                       +......+.. .+.+..+...|.++++.++..++..|..+|.... .. ...+.          +..-..+++..+...
T Consensus        84 -~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~  162 (233)
T 2f31_A           84 -NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG  162 (233)
T ss_dssp             -SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT
T ss_pred             -ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC
Confidence             6666666664 4678999999999999999999999988885432 11 22221          122345566666434


Q ss_pred             cchhHHHHHHHHHHHhhcCC
Q 043676          143 AKLSMLRNATRTLSNFCRGK  162 (446)
Q Consensus       143 ~~~~~~~~a~~~L~~l~~~~  162 (446)
                      .+.+.+..++..+-.+....
T Consensus       163 ~~~e~~~~~m~lIN~li~~~  182 (233)
T 2f31_A          163 TSIALKVGCLQLINALITPA  182 (233)
T ss_dssp             SCHHHHHHHHHHHHHHHTTC
T ss_pred             ChHHHHHHHHHHHHHHHCCC
Confidence            44555555555555555543

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=95.16  E-value=1.9  Score=45.20  Aligned_cols=283  Identities=11%  Similarity=0.063  Sum_probs=157.2

Q ss_pred             hHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCC-----ChHHHHHHHHcCCh
Q 043676           60 PQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLL--SSPSDDVREQAVWALGNVAGD-----SPRCRDLVLSQGAL  132 (446)
Q Consensus        60 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L--~~~~~~v~~~a~~~l~~l~~~-----~~~~~~~~~~~~~i  132 (446)
                      ...|.+|-..|.++-. ++         .....+...|  .+.++.+|..|+..|.+....     .++.+..+.     
T Consensus        27 ~~~r~~Ae~~L~~~~~-~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir-----   91 (1204)
T 3a6p_A           27 QRYRLEALKFCEEFKE-KC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK-----   91 (1204)
T ss_dssp             HHHHHHHHHHHHHHHH-HC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-----
T ss_pred             hHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-----
Confidence            6778888888877654 22         1333444333  346789999999999988732     233333332     


Q ss_pred             HHHHHHhccc------cchhHHHHHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccC---
Q 043676          133 IPLLAELNEH------AKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADG---  202 (446)
Q Consensus       133 ~~l~~~l~~~------~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~---  202 (446)
                      ..++..+...      ....++..++.++..++... +.    .-.++++.++.++.+ ++..++.++.+|..++..   
T Consensus        92 ~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~----~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~  166 (1204)
T 3a6p_A           92 NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ----HWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVT  166 (1204)
T ss_dssp             HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT----TCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc----cchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcc
Confidence            2344444222      35678888899999988775 42    235778888888876 556677788888777632   


Q ss_pred             ----CcHHHHH---HHHh---CcHHHHHHhcCC-------------------CCccchhHHHHHHHHhhcCCchhhHHHH
Q 043676          203 ----TNDKIQA---VIEA---GVCPRLVELLGH-------------------PSPSVLTPALRTVGNIVTGDDFQTQCII  253 (446)
Q Consensus       203 ----~~~~~~~---~~~~---~~~~~l~~ll~~-------------------~~~~~~~~a~~~l~~l~~~~~~~~~~~~  253 (446)
                          ...+...   .+..   .+++.+..++..                   .+..+...++.++.+....-+.  ..+.
T Consensus       167 ~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~  244 (1204)
T 3a6p_A          167 FQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SHIT  244 (1204)
T ss_dssp             SCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HHHH
Confidence                1111111   1111   222333333322                   1223555677777666553332  1223


Q ss_pred             hcC--ChHHHHHHhccCchHHHHHHHHHHHHHHhcCC--HHHHHHHHHc---CChHHHHHHHh--------cCCcchHHH
Q 043676          254 NHG--AVPYLLDMLVHNHEEIIKKEISWIISNITAGN--REQIQAVIDA---GLIRPIVNLLQ--------NAEFDTKKE  318 (446)
Q Consensus       254 ~~~--~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~--~~~~~~~~~~---~~i~~L~~ll~--------~~~~~v~~~  318 (446)
                      +..  +++.+...+.+   +.++..|+.+|..++...  ++....++..   ..+..++....        +.+.++.+.
T Consensus       245 ~~~~~ll~~l~~~l~~---~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~  321 (1204)
T 3a6p_A          245 AENCKLLEILCLLLNE---QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKR  321 (1204)
T ss_dssp             TTTSHHHHHHHHGGGC---TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHH
T ss_pred             hccchHHHHHHHHcCC---HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHH
Confidence            332  66666666653   478999999999998732  3433323320   11234444432        113455666


Q ss_pred             HHHHHHHhccCCCHHHHHHHHH-----------cCChHHHHhcccCCCHHHHHHHHHHHHHHHHh
Q 043676          319 AAWAISNATSGGTQEQIKHLVR-----------EGCVKPLCDLLLCSDPEIVTVCLIGLENILKV  372 (446)
Q Consensus       319 a~~aL~~l~~~~~~~~~~~l~~-----------~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~  372 (446)
                      .+..+..+..    . ...+..           .++++.+..+..+++..+...++..-..+++.
T Consensus       322 l~~ll~~lg~----~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          322 LCQVLCALGN----Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             HHHHHHHHHH----H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHH----H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence            6666666542    1 111111           12466677777777777777777655555543

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=94.77  E-value=3.2  Score=42.72  Aligned_cols=160  Identities=12%  Similarity=0.123  Sum_probs=105.2

Q ss_pred             chhHHHHHHHHHHHhhc----CCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHH
Q 043676          144 KLSMLRNATRTLSNFCR----GKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRL  219 (446)
Q Consensus       144 ~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l  219 (446)
                      ++.++..++.+++.+..    ..+.........+...+...+...+.+-+..++.+|+|+...           ..++.+
T Consensus       408 ~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-----------~~l~~l  476 (1056)
T 1lsh_A          408 RPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-----------NSIKKI  476 (1056)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG-----------GGHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh-----------hHHHHH
Confidence            45666777777666654    323323333455666666777777888889999999998752           345666


Q ss_pred             HHhcCC-----C--CccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhcc-CchHHHHHHHHHHHHHHhcCCHHH
Q 043676          220 VELLGH-----P--SPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVH-NHEEIIKKEISWIISNITAGNREQ  291 (446)
Q Consensus       220 ~~ll~~-----~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~v~~~a~~~l~~l~~~~~~~  291 (446)
                      .+++..     .  ...++..|+++|..++...+....        +.++.++.+ ..+.++|..|+..|... .-+.. 
T Consensus       477 ~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvRiaA~~~Lm~t-~P~~~-  546 (1056)
T 1lsh_A          477 QRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFES-KPSVA-  546 (1056)
T ss_dssp             HTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHHT-CCCHH-
T ss_pred             HHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHHHHHHHHHHHH-CcCHH-
Confidence            666642     1  234777899999999876554333        456677632 23789999998888654 22222 


Q ss_pred             HHHHHHcCChHHHHHHHhc-CCcchHHHHHHHHHHhccCCCH
Q 043676          292 IQAVIDAGLIRPIVNLLQN-AEFDTKKEAAWAISNATSGGTQ  332 (446)
Q Consensus       292 ~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~  332 (446)
                              .+..+...+.. .+..|.......|.+++....+
T Consensus       547 --------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P  580 (1056)
T 1lsh_A          547 --------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  580 (1056)
T ss_dssp             --------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             --------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence                    34455565654 5778888888888888887655

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=94.71  E-value=0.2  Score=42.99  Aligned_cols=115  Identities=16%  Similarity=0.110  Sum_probs=88.1

Q ss_pred             HHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccc
Q 043676           65 EAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAK  144 (446)
Q Consensus        65 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~  144 (446)
                      .+...|.-+. +++...+-+++.+++..+...++-++.++.+..+..|...+....-+..-  -...++-++..+..+++
T Consensus       262 R~FDLL~LLm-HdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~--L~e~LPFi~~~i~~h~e  338 (619)
T 3c2g_A          262 RTFDLLGLLL-HDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTP--LENILPFLLRLIEIHPD  338 (619)
T ss_dssp             HHHHHHHHHC-CSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSC--CTTHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHh-cccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcc--ccccchHHHHHhccCCC
Confidence            3444444444 48888999999999999999999999999999999999888443322111  12346778888878889


Q ss_pred             hhHHHHHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhc
Q 043676          145 LSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLVH  182 (446)
Q Consensus       145 ~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~  182 (446)
                      .++.......|+|...+. +..+.....+.++.+...+.
T Consensus       339 DdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~  377 (619)
T 3c2g_A          339 DEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS  377 (619)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             cceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence            999999999999999887 55566666888888877664

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=93.16  E-value=1.5  Score=39.17  Aligned_cols=133  Identities=13%  Similarity=0.070  Sum_probs=86.3

Q ss_pred             CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCc-hh-hHHHH---------
Q 043676          185 DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDD-FQ-TQCII---------  253 (446)
Q Consensus       185 ~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~-~~-~~~~~---------  253 (446)
                      +......++.||..+..........+...+.+..+...+.++.+.++..++..|+.+|.... .. ...++         
T Consensus        71 d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~  150 (386)
T 2bnx_A           71 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM  150 (386)
T ss_dssp             HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHh
Confidence            46778889999999987766555545555789999999999999999999999988887554 22 22222         


Q ss_pred             -hcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCC--HHH----HHHHHHcCChHHHHHHHhcCCcchHH
Q 043676          254 -NHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGN--REQ----IQAVIDAGLIRPIVNLLQNAEFDTKK  317 (446)
Q Consensus       254 -~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~--~~~----~~~~~~~~~i~~L~~ll~~~~~~v~~  317 (446)
                       +..-+..++..+....+.+.+..++..+..+....  .+.    +..+...|+.+.+-.+-..+++.+..
T Consensus       151 ~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~  221 (386)
T 2bnx_A          151 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKV  221 (386)
T ss_dssp             HTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHH
T ss_pred             CchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHHH
Confidence             22356667888875536677766666666665532  222    23445566666554443334554443

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=93.08  E-value=4.6  Score=35.95  Aligned_cols=234  Identities=12%  Similarity=0.016  Sum_probs=117.9

Q ss_pred             HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676           81 TNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR  160 (446)
Q Consensus        81 ~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  160 (446)
                      ....++...+..|+.++.++|+.-|...-.+|..+-..-...|..+.. .+-..+.+.+.......-....+.+++.+..
T Consensus       122 ~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~e~~~GIaeLLeilgsIin  200 (403)
T 3fga_B          122 AKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIIN  200 (403)
T ss_dssp             HTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred             HHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCcccCCCHHHHHHHHHHHHc
Confidence            344455567888999999999999999988888887555555544433 1223344444222222333456666666665


Q ss_pred             CCCCCCh-hhhhhhHHHHHHhhcCCC-HhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHH
Q 043676          161 GKPEPPF-DQVRPALPALAQLVHSND-EDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTV  238 (446)
Q Consensus       161 ~~~~~~~-~~~~~~~~~l~~ll~~~~-~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l  238 (446)
                      +....-. ....-....|+.+.+... .........|+......++.....+     +..+++.=-..++.-...-+.-+
T Consensus       201 Gfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~El  275 (403)
T 3fga_B          201 GFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNEL  275 (403)
T ss_dssp             HCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSCHHHHHHHHHHH
T ss_pred             ccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCCcHHHHHHHHHH
Confidence            5422211 222233445555555443 2233444455555444444433322     22222221112221112223334


Q ss_pred             HHhhcCC-chhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHH---cCChHHHHHHHh----c
Q 043676          239 GNIVTGD-DFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVID---AGLIRPIVNLLQ----N  310 (446)
Q Consensus       239 ~~l~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~---~~~i~~L~~ll~----~  310 (446)
                      ..+.... +.....+ ...++..+...+.++ +..|.+.|+...     .++.. ..++.   ..++|.+...+.    .
T Consensus       276 e~iLe~~~~~~f~~i-~~~lf~~la~ci~S~-hfqVAErAL~~w-----nNe~i-~~li~~n~~~IlPii~p~L~~~~~~  347 (403)
T 3fga_B          276 EEILDVIEPSEFVKI-MEPLFRQLAKCVSSP-HFQVAERALYYW-----NNEYI-MSLISDNAAKILPIMFPSLYRNSKT  347 (403)
T ss_dssp             HHHHTTCCHHHHHHH-HHHHHHHHHHHHTCS-CHHHHHHHHGGG-----GCHHH-HHHHHTTHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHhCCHHHHHHH-HHHHHHHHHHHHCCC-CHHHHHHHHHHh-----ccHHH-HHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            4444332 2222222 223567777888888 888887766543     22222 22222   124555555442    2


Q ss_pred             C-CcchHHHHHHHHHHhcc
Q 043676          311 A-EFDTKKEAAWAISNATS  328 (446)
Q Consensus       311 ~-~~~v~~~a~~aL~~l~~  328 (446)
                      . +..++..+..++.-+..
T Consensus       348 HWn~~v~~l~~~vlk~l~e  366 (403)
T 3fga_B          348 HWNKTIHGLIYNALKLFME  366 (403)
T ss_dssp             CSCHHHHHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHHHHHHHHHH
Confidence            2 56788778777776654

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=92.91  E-value=2.8  Score=43.14  Aligned_cols=166  Identities=14%  Similarity=0.131  Sum_probs=109.4

Q ss_pred             hHHHHHhhCC----CCHHHHHHHHHHHHHhhC----CChHHHHHHHHcCChHHHHHHhc---cccchhHHHHHHHHHHHh
Q 043676           90 VPIFVKLLSS----PSDDVREQAVWALGNVAG----DSPRCRDLVLSQGALIPLLAELN---EHAKLSMLRNATRTLSNF  158 (446)
Q Consensus        90 i~~L~~~L~~----~~~~v~~~a~~~l~~l~~----~~~~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l  158 (446)
                      +..+..++.+    .++.++..++.+++.++.    ..+.|.     ...++.+.+.+.   ...+..-+..++.+|+|+
T Consensus       393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~-----~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~  467 (1056)
T 1lsh_A          393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCP-----DELLQPLHDLLSQSSDRAKEEEIVLALKALGNA  467 (1056)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCC-----GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCC-----HHHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence            4556666665    467788888888877762    211111     122444444442   334566778899999999


Q ss_pred             hcCCCCCChhhhhhhHHHHHHhhcC-------CCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC--CCCcc
Q 043676          159 CRGKPEPPFDQVRPALPALAQLVHS-------NDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLG--HPSPS  229 (446)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~l~~ll~~-------~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~--~~~~~  229 (446)
                      -..          ..++.+..++..       ....++..|+++|..++...+...+        +.+.++..  ..+++
T Consensus       468 g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~E  529 (1056)
T 1lsh_A          468 GQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSE  529 (1056)
T ss_dssp             TCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHH
T ss_pred             CCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChH
Confidence            653          356777777742       1357888999999999977665444        55667763  46777


Q ss_pred             chhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCC
Q 043676          230 VLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGN  288 (446)
Q Consensus       230 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~  288 (446)
                      +|..|+..|.   ..+|...       .+..+...+..+.+..|.......|.+++...
T Consensus       530 vRiaA~~~Lm---~t~P~~~-------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~  578 (1056)
T 1lsh_A          530 LRIRSCIVFF---ESKPSVA-------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSS  578 (1056)
T ss_dssp             HHHHHHHHHH---HTCCCHH-------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHH---HHCcCHH-------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence            8888887763   2223221       35678888877658899999999999998743

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=92.80  E-value=0.79  Score=38.71  Aligned_cols=133  Identities=14%  Similarity=0.081  Sum_probs=86.9

Q ss_pred             chhHHHHHHHHhhcCCchhhHHHH--hcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHH--cCChHHHH
Q 043676          230 VLTPALRTVGNIVTGDDFQTQCII--NHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVID--AGLIRPIV  305 (446)
Q Consensus       230 ~~~~a~~~l~~l~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~--~~~i~~L~  305 (446)
                      ....|+..|.-++..-.... .++  +...+..|+ +.... ++.+++.|+++++...+.+|.....+.+  ..++..++
T Consensus        44 ~le~aLD~L~ElSHDi~~G~-KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf  120 (315)
T 3qml_C           44 RLEDSFDRIMEFAHDYKHGY-KIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIM  120 (315)
T ss_dssp             HHHHHHHHHGGGTTSHHHHH-HHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHhhh-HHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHH
Confidence            34567777777775433333 333  223333333 22334 6789999999999999999999888775  34555555


Q ss_pred             HHHhc-------CCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCC--CHHHHHHHHHHHHHHHH
Q 043676          306 NLLQN-------AEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCS--DPEIVTVCLIGLENILK  371 (446)
Q Consensus       306 ~ll~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~~~~~~~~~l~~l~~  371 (446)
                      .-+..       ....+++.-+.+|.-+....  .   .+ ....+..|.+++...  ++.++.+++.++..++.
T Consensus       121 ~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~--~---~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~  189 (315)
T 3qml_C          121 AALSNLNDSNHRSSNILIKRYLSILNELPVTS--E---DL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK  189 (315)
T ss_dssp             HHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS--T---TC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccchhHHHHHHHHHHHHHHhcCh--H---hh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence            54433       23356677777888887753  1   11 134567777777666  89999999999999886

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=92.54  E-value=0.27  Score=36.64  Aligned_cols=75  Identities=8%  Similarity=0.024  Sum_probs=59.3

Q ss_pred             ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhh
Q 043676          300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGE  374 (446)
Q Consensus       300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~  374 (446)
                      ++..+.+-+.++++.++..|+..|-.+..+++......+....++..+..+++..++.|+..++..+........
T Consensus        43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~  117 (140)
T 3ldz_A           43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK  117 (140)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhC
Confidence            455677778888999999999999999888877766666566677777788877889999999999888765433

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=92.31  E-value=5.3  Score=36.20  Aligned_cols=237  Identities=12%  Similarity=0.015  Sum_probs=122.9

Q ss_pred             hHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 043676           80 NTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFC  159 (446)
Q Consensus        80 ~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  159 (446)
                      .....++...+..|+.++.++|+.-|...-.+|..+-..-...|..+... +-..+.+.+.......-....+.+++.+.
T Consensus       154 ~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgSIi  232 (449)
T 2npp_B          154 IAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSII  232 (449)
T ss_dssp             TGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHHHH
T ss_pred             hhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHHHH
Confidence            34455566678899999999999999998888887765444444444331 22344555533333344456777777777


Q ss_pred             cCCCCC-ChhhhhhhHHHHHHhhcCCC-HhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHH
Q 043676          160 RGKPEP-PFDQVRPALPALAQLVHSND-EDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRT  237 (446)
Q Consensus       160 ~~~~~~-~~~~~~~~~~~l~~ll~~~~-~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~  237 (446)
                      .+.... ......-....|+.+.+... .........|+......++.....     ++..|++.=-..+..-...-+.-
T Consensus       233 nGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~WP~tns~KevlFL~e  307 (449)
T 2npp_B          233 NGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYWPKTHSPKEVMFLNE  307 (449)
T ss_dssp             SSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTCCSSCHHHHHHHHHH
T ss_pred             hccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-----HHHHHHHhCCCCCchHHHHHHHH
Confidence            765222 12222333455555655443 223334445555544444443332     22222222111222111223333


Q ss_pred             HHHhhcCC-chhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHH--cCChHHHHHHHhc----
Q 043676          238 VGNIVTGD-DFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVID--AGLIRPIVNLLQN----  310 (446)
Q Consensus       238 l~~l~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~--~~~i~~L~~ll~~----  310 (446)
                      +..+.... +.....+ ...++..+...+.++ +..|.+.|+...     .++.....+.+  ..++|.+...+..    
T Consensus       308 leeile~~~~~ef~~i-~~~lF~~la~ci~S~-hfqVAErAL~~w-----~N~~i~~li~~n~~~IlPii~p~L~~~s~~  380 (449)
T 2npp_B          308 LEEILDVIEPSEFVKI-MEPLFRQLAKCVSSP-HFQVAERALYYW-----NNEYIMSLISDNAAKILPIMFPSLYRNSKT  380 (449)
T ss_dssp             HHHHHTTCCHHHHHHH-HHHHHHHHHHHHTCS-CHHHHHHHHGGG-----GCHHHHHHHHTTHHHHHHHHHHHHTSCTTC
T ss_pred             HHHHHHhCCHHHHHHH-HHHHHHHHHHHHcCC-CHHHHHHHHHHH-----CCHHHHHHHHhchhhhHHhhHHHHHHHHHH
Confidence            44444322 2222222 223667777888888 888888776433     22322222221  1245666665532    


Q ss_pred             C-CcchHHHHHHHHHHhccC
Q 043676          311 A-EFDTKKEAAWAISNATSG  329 (446)
Q Consensus       311 ~-~~~v~~~a~~aL~~l~~~  329 (446)
                      . +..++..+..++.-+...
T Consensus       381 HWn~~V~~la~~vlk~l~e~  400 (449)
T 2npp_B          381 HWNKTIHGLIYNALKLFMEM  400 (449)
T ss_dssp             CSSTTHHHHHHHHHHHHHTT
T ss_pred             hcCHHHHHHHHHHHHHHHHH
Confidence            1 457888888777766543

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=92.15  E-value=0.53  Score=36.10  Aligned_cols=73  Identities=11%  Similarity=0.086  Sum_probs=57.4

Q ss_pred             ChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcC-CCHHHHHHHHHHH
Q 043676          343 CVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSH-DNNEIHEKSVKIF  421 (446)
Q Consensus       343 ~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~-~~~~v~~~a~~~l  421 (446)
                      ++..|..-+.++++.++..|+..|..+++.+...            |...+....+++.+..+... .++.|+++...++
T Consensus        53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~------------Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li  120 (163)
T 1x5b_A           53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKI------------FHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLM  120 (163)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHH------------HHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH------------HHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence            3455666677889999999999999999987664            56677777778887777765 6789999999999


Q ss_pred             HHhcCC
Q 043676          422 KTYWCG  427 (446)
Q Consensus       422 ~~~~~~  427 (446)
                      +.+...
T Consensus       121 ~~W~~~  126 (163)
T 1x5b_A          121 VEWSEE  126 (163)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887543

>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A

Probab=92.07  E-value=0.78  Score=33.88  Aligned_cols=79  Identities=9%  Similarity=0.131  Sum_probs=55.3

Q ss_pred             ChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHh-ChHHHHHHhhcCCC--------HHH
Q 043676          343 CVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEA-GGLEKIENLQSHDN--------NEI  413 (446)
Q Consensus       343 ~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~l~~l~~~~~--------~~v  413 (446)
                      +++.|.+-|.+.++.+..+++.+|..++..+...            |...+++. ..++.+.++...++        ..|
T Consensus        50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~------------f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~V  117 (140)
T 1vdy_A           50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSE------------FRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAV  117 (140)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHH------------HHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHH
T ss_pred             HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHH------------HHHHHHHhHHHHHHHHhcCCCCCcccccchhHHH
Confidence            4667778888889999999999999998776543            44444433 23333443433322        568


Q ss_pred             HHHHHHHHHHhcCCCCCccc
Q 043676          414 HEKSVKIFKTYWCGRNEEED  433 (446)
Q Consensus       414 ~~~a~~~l~~~~~~~~~~~~  433 (446)
                      +..|.++++-+|+++.....
T Consensus       118 R~~AkEl~~ll~d~~~~~~~  137 (140)
T 1vdy_A          118 RETAHETISAIFSEENGSGP  137 (140)
T ss_dssp             HHHHHHHHHHHTCCSSCCCC
T ss_pred             HHHHHHHHHHHhCcCCCCCC
Confidence            99999999999988876443

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=91.91  E-value=1.9  Score=36.45  Aligned_cols=152  Identities=12%  Similarity=0.105  Sum_probs=98.3

Q ss_pred             hhhHHHHHHhhcCC------CHhHHHHHHHHHHHhccCCcHHHHHHH-HhCcHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 043676          171 RPALPALAQLVHSN------DEDVLTYACWSLSYLADGTNDKIQAVI-EAGVCPRLVELLGHPSPSVLTPALRTVGNIVT  243 (446)
Q Consensus       171 ~~~~~~l~~ll~~~------~~~v~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~  243 (446)
                      +.-+..+..+++++      +..-...++..|..++.......+..- +..++..|+ +.....+.+++.|..+|+...+
T Consensus        21 s~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLR   99 (315)
T 3qml_C           21 SSDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLR   99 (315)
T ss_dssp             HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHc
Confidence            34445555666655      455678888888888876554444333 334555555 3344566789999999999999


Q ss_pred             CCchhhHHHHhc--CChHHHHHHhcc----C--chHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--Cc
Q 043676          244 GDDFQTQCIINH--GAVPYLLDMLVH----N--HEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA--EF  313 (446)
Q Consensus       244 ~~~~~~~~~~~~--~~~~~l~~~l~~----~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~  313 (446)
                      .+|.....+.+.  .++..+..-|..    +  ....+.+.-+.+|.-|...+..    + ....+..|.+++...  ++
T Consensus       100 NNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~L~~ly~~~~~d~  174 (315)
T 3qml_C          100 NNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED----L-PIYSTVVLQNVYERNNKDK  174 (315)
T ss_dssp             TCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT----C---CCHHHHHHHHHHTTTCH
T ss_pred             cCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh----h-hhccHHHHHHHHccCCCCH
Confidence            999888877642  344444433322    1  1335667777788888665421    1 134667788888776  88


Q ss_pred             chHHHHHHHHHHhcc
Q 043676          314 DTKKEAAWAISNATS  328 (446)
Q Consensus       314 ~v~~~a~~aL~~l~~  328 (446)
                      .++..++..+..+..
T Consensus       175 ~~k~Kvl~li~d~f~  189 (315)
T 3qml_C          175 QLQIKVLELISKILK  189 (315)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcc
Confidence            999999999988763

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=91.57  E-value=0.37  Score=36.27  Aligned_cols=75  Identities=8%  Similarity=-0.064  Sum_probs=61.2

Q ss_pred             ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccC------CCHHHHHHHHHHHHHHHHhh
Q 043676          300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC------SDPEIVTVCLIGLENILKVG  373 (446)
Q Consensus       300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~~~~~~~~~l~~l~~~~  373 (446)
                      .+..+.+-+.+.++.++..|+..|-.+..++.......+....++..|+.++..      .++.|+..++..+.......
T Consensus        49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  128 (149)
T 3g2s_A           49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL  128 (149)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence            455677778889999999999999999998888877777777788888888863      57889999999998877644


Q ss_pred             h
Q 043676          374 E  374 (446)
Q Consensus       374 ~  374 (446)
                      .
T Consensus       129 ~  129 (149)
T 3g2s_A          129 P  129 (149)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=91.44  E-value=0.5  Score=35.23  Aligned_cols=73  Identities=12%  Similarity=0.140  Sum_probs=57.4

Q ss_pred             ChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHH
Q 043676          343 CVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFK  422 (446)
Q Consensus       343 ~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~  422 (446)
                      ++..|..-+.++++.++..|+..|..+++.++..            |...+....+++.+..+....++.|+++...++.
T Consensus        43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~------------f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~  110 (140)
T 3ldz_A           43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKI------------FHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMV  110 (140)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH------------HHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHH------------HHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            3555666677889999999999999999887664            5666666667777777777788999999999998


Q ss_pred             HhcCC
Q 043676          423 TYWCG  427 (446)
Q Consensus       423 ~~~~~  427 (446)
                      .+...
T Consensus       111 ~W~~~  115 (140)
T 3ldz_A          111 EWTDE  115 (140)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87543

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=91.33  E-value=5.6  Score=33.06  Aligned_cols=89  Identities=10%  Similarity=0.079  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHh
Q 043676           17 SLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKL   96 (446)
Q Consensus        17 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~   96 (446)
                      ..+...+.....++... ++.   +. ..+++.++.+..+++ .++|...+..+...+...++....     .++.|..+
T Consensus        30 ~~kl~~L~qa~el~~~~-dp~---ll-~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~~-----~l~~L~~L   98 (257)
T 3gs3_A           30 STKCELLAKVQETVLGS-CAE---LA-EEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLPH-----VINVVSML   98 (257)
T ss_dssp             HHHHHHHHHHHHHHTTT-TGG---GH-HHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcc-CHh---HH-HHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence            67888888888876653 221   12 246777778766666 899999999988888644443333     46788888


Q ss_pred             hCCCCHHHHHHHHHHHHHhh
Q 043676           97 LSSPSDDVREQAVWALGNVA  116 (446)
Q Consensus        97 L~~~~~~v~~~a~~~l~~l~  116 (446)
                      ++++++.+...++.+..++.
T Consensus        99 l~d~d~~V~K~~I~~~~~iY  118 (257)
T 3gs3_A           99 LRDNSAQVIKRVIQACGSIY  118 (257)
T ss_dssp             TTCSCHHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHH
Confidence            88888888888887776664

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=91.22  E-value=0.89  Score=35.17  Aligned_cols=72  Identities=14%  Similarity=0.130  Sum_probs=57.8

Q ss_pred             ChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhc------CCCHHHHHH
Q 043676          343 CVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQS------HDNNEIHEK  416 (446)
Q Consensus       343 ~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~------~~~~~v~~~  416 (446)
                      ++..|.+-+.+.++.++..++..|..+++.+...            |...+....+++.|..+..      ..+..|+++
T Consensus        51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~------------Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~k  118 (171)
T 1juq_A           51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRR------------FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTK  118 (171)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH------------HHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHH
Confidence            3556667778899999999999999999987764            6777877888888888875      246889999


Q ss_pred             HHHHHHHhcC
Q 043676          417 SVKIFKTYWC  426 (446)
Q Consensus       417 a~~~l~~~~~  426 (446)
                      +..+++.+..
T Consensus       119 il~li~~W~~  128 (171)
T 1juq_A          119 VIELLYSWTM  128 (171)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999987743

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=90.96  E-value=0.88  Score=34.22  Aligned_cols=73  Identities=11%  Similarity=0.073  Sum_probs=58.5

Q ss_pred             ChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcC------CCHHHHHH
Q 043676          343 CVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSH------DNNEIHEK  416 (446)
Q Consensus       343 ~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~------~~~~v~~~  416 (446)
                      ++..|..-+.++++.++..|+..|..+++.+...            |...+....+++.|..+...      .++.|+++
T Consensus        39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~------------fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~k  106 (148)
T 1mhq_A           39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEK------------FHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGR  106 (148)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH------------HHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH------------HHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHH
Confidence            3555666677899999999999999999987664            67788878888888888753      47899999


Q ss_pred             HHHHHHHhcCC
Q 043676          417 SVKIFKTYWCG  427 (446)
Q Consensus       417 a~~~l~~~~~~  427 (446)
                      ...++..+...
T Consensus       107 il~li~~W~~~  117 (148)
T 1mhq_A          107 VIEILFSWTVW  117 (148)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999887543

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=90.57  E-value=0.79  Score=34.48  Aligned_cols=73  Identities=7%  Similarity=-0.085  Sum_probs=60.1

Q ss_pred             ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccC------CCHHHHHHHHHHHHHHHHh
Q 043676          300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC------SDPEIVTVCLIGLENILKV  372 (446)
Q Consensus       300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~~~~~~~~~l~~l~~~  372 (446)
                      ++..+.+-++++++.++..|+..|-.+..+++......+....++..|..++..      .++.|+..++..+......
T Consensus        39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~  117 (148)
T 1mhq_A           39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW  117 (148)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            455677777889999999999999999998888877777777888889988864      4778999999888876654

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=90.44  E-value=0.96  Score=34.02  Aligned_cols=74  Identities=14%  Similarity=0.157  Sum_probs=59.2

Q ss_pred             ChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhc------CCCHHHHHH
Q 043676          343 CVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQS------HDNNEIHEK  416 (446)
Q Consensus       343 ~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~------~~~~~v~~~  416 (446)
                      ++..|..-+.+.++.++..++..|..+++.+...            |...+....+++.|..+..      ..+++|+++
T Consensus        49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~------------fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~k  116 (149)
T 3g2s_A           49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR------------FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNK  116 (149)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHH------------HHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHH------------HHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHH
Confidence            3555666677899999999999999999987765            6777777788888888875      357899999


Q ss_pred             HHHHHHHhcCCC
Q 043676          417 SVKIFKTYWCGR  428 (446)
Q Consensus       417 a~~~l~~~~~~~  428 (446)
                      ...++..+...-
T Consensus       117 il~li~~W~~~f  128 (149)
T 3g2s_A          117 ILELLYSWTVGL  128 (149)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh
Confidence            999999885433

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=90.06  E-value=0.54  Score=36.08  Aligned_cols=73  Identities=4%  Similarity=-0.014  Sum_probs=57.8

Q ss_pred             ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccC-CCHHHHHHHHHHHHHHHHh
Q 043676          300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC-SDPEIVTVCLIGLENILKV  372 (446)
Q Consensus       300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~~~~~~l~~l~~~  372 (446)
                      ++..+.+-+.++++.++..|+..|-.+..++.......+....++..|..++.. .++.|+..++..+......
T Consensus        53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~  126 (163)
T 1x5b_A           53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE  126 (163)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence            455677778889999999999999999998887777666666677778777765 5688999998888776543

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=90.02  E-value=4.8  Score=35.70  Aligned_cols=108  Identities=14%  Similarity=0.166  Sum_probs=78.4

Q ss_pred             cCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHH
Q 043676          255 HGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQ  334 (446)
Q Consensus       255 ~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~  334 (446)
                      .++++.++.+-.+. +.++|+..+..|...+....+.   +.  .+++.|..++.+.++.+.+.++.+.+++..    ..
T Consensus        62 ~~fl~~il~f~~d~-~~~vRk~~a~FieEa~~~~~el---~~--~~l~~L~~LL~d~d~~V~K~~I~~~tslYp----l~  131 (386)
T 3o2t_A           62 DNFLDEIIAFQADK-SIEVRKFVIGFIEEACKRDIEL---LL--KLIANLNMLLRDENVNVVKKAILTMTQLYK----VA  131 (386)
T ss_dssp             GGGHHHHHGGGGCS-CHHHHHHHHHHHHHHHHHCGGG---HH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHHH----HH
T ss_pred             HHHHHHHHHhccCC-cHHHHHHHHHHHHHHHHHHHHH---HH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHH----HH
Confidence            35788899888888 8999999999998887533332   22  367788888888899999999988888742    22


Q ss_pred             HHHHHHcC---------------ChHHHHhcccCCCHHHHHHHHHHHHHHHHh
Q 043676          335 IKHLVREG---------------CVKPLCDLLLCSDPEIVTVCLIGLENILKV  372 (446)
Q Consensus       335 ~~~l~~~~---------------~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~  372 (446)
                      .+++...+               +-..++.++++.+..++..|++.+..++-.
T Consensus       132 f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~  184 (386)
T 3o2t_A          132 LQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVT  184 (386)
T ss_dssp             HHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence            22222222               234466677888999999999999998753

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=88.64  E-value=0.86  Score=35.26  Aligned_cols=73  Identities=8%  Similarity=-0.015  Sum_probs=58.6

Q ss_pred             ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccC------CCHHHHHHHHHHHHHHHHh
Q 043676          300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC------SDPEIVTVCLIGLENILKV  372 (446)
Q Consensus       300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~~~~~~~~~l~~l~~~  372 (446)
                      ++..|.+-++++++.++..|+..|-.+..++.......+....++..|+.++..      .++.|+.+++..+......
T Consensus        51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~  129 (171)
T 1juq_A           51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA  129 (171)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            456677778889999999999999999988777776666777778888888752      4678999999988886643

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=88.59  E-value=9.6  Score=31.66  Aligned_cols=131  Identities=14%  Similarity=0.112  Sum_probs=80.8

Q ss_pred             hHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC
Q 043676          146 SMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH  225 (446)
Q Consensus       146 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~  225 (446)
                      +.+-..+.-...+..+..   ......+++.++.+..+.+.++|..+...+...+...++...     ..++.|..++.+
T Consensus        30 ~~kl~~L~qa~el~~~~d---p~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~Ll~d  101 (257)
T 3gs3_A           30 STKCELLAKVQETVLGSC---AELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP-----HVINVVSMLLRD  101 (257)
T ss_dssp             HHHHHHHHHHHHHHTTTT---GGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHccC---HhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcC
Confidence            455555666666555531   235678888888887778899999999999888855554333     567788888888


Q ss_pred             CCccchhHHHHHHHHhhc-------CCch---hhHHHHh--cCChHHHHHHhccCchHHHHHHHHHHHHHHh
Q 043676          226 PSPSVLTPALRTVGNIVT-------GDDF---QTQCIIN--HGAVPYLLDMLVHNHEEIIKKEISWIISNIT  285 (446)
Q Consensus       226 ~~~~~~~~a~~~l~~l~~-------~~~~---~~~~~~~--~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~  285 (446)
                      +++.+.+.+..+.+++-.       .++.   .....++  ..+-..++.++.+. +..+|..++..+..+.
T Consensus       102 ~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~-n~gvkl~~iKF~e~vI  172 (257)
T 3gs3_A          102 NSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNE-NDGIRTNAIKFLEGVV  172 (257)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSS-CHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccC-CcchHHHHHHHHHHHH
Confidence            888888887776665521       1111   1111111  12233455555555 6666666666555543

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=87.30  E-value=15  Score=32.52  Aligned_cols=89  Identities=9%  Similarity=0.115  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHh
Q 043676           17 SLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKL   96 (446)
Q Consensus        17 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~   96 (446)
                      ..+...+..+.+++... ++.    .-.++++.++.+-.+++ .++|...+..|...+....+...     .+++.|..+
T Consensus        40 ~~Kl~~L~q~~EL~l~~-dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~L  108 (386)
T 3o2t_A           40 DSKITVLKQVQELIINK-DPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLL-----KLIANLNML  108 (386)
T ss_dssp             THHHHHHHHHHHHHHTT-CGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcc-CHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence            35777777777765542 221    22468888998888888 89999999988888764444432     246788888


Q ss_pred             hCCCCHHHHHHHHHHHHHhh
Q 043676           97 LSSPSDDVREQAVWALGNVA  116 (446)
Q Consensus        97 L~~~~~~v~~~a~~~l~~l~  116 (446)
                      |++.++.+...++.+..++.
T Consensus       109 L~d~d~~V~K~~I~~~tslY  128 (386)
T 3o2t_A          109 LRDENVNVVKKAILTMTQLY  128 (386)
T ss_dssp             HTCSSHHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHH
Confidence            88888888888888777764

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=84.56  E-value=16  Score=33.10  Aligned_cols=227  Identities=13%  Similarity=0.062  Sum_probs=118.9

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCC-----h
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGT-----S   78 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~-----~   78 (446)
                      +..|+..+.|+|+..|..--..|..+-..  -...+..+...+-..+.+.+-......-....+.+++.+..+-     +
T Consensus       164 i~~Ll~lfdSeDpRERd~LktiLhrIY~K--f~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKe  241 (449)
T 2npp_B          164 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE  241 (449)
T ss_dssp             HHHHHHTTTSSTHHHHHHHHHHHHHHHHS--CTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCH
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcH
Confidence            44678888899998888888788765443  2333444444444556666544332344456777888877642     3


Q ss_pred             hhHHHHHhcCChHHHHHhhCCCCHH-HHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHH
Q 043676           79 ENTNVVIDHGAVPIFVKLLSSPSDD-VREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSN  157 (446)
Q Consensus        79 ~~~~~~~~~~~i~~L~~~L~~~~~~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  157 (446)
                      +++..+     ...|+.+.+...-. ....-..++..++..++.....+     +..+++.- -.++..-...-+.-+..
T Consensus       242 ehk~fl-----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~W-P~tns~KevlFL~elee  310 (449)
T 2npp_B          242 EHKIFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYW-PKTHSPKEVMFLNELEE  310 (449)
T ss_dssp             HHHHHH-----HHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTC-CSSCHHHHHHHHHHHHH
T ss_pred             HHHHHH-----HHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHH-----HHHHHHhC-CCCCchHHHHHHHHHHH
Confidence            444333     34455555543321 12233344444444444433322     23344433 12222222223333344


Q ss_pred             hhcCCCCCChh-hhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHh---CcHHHHHHhcCC-----CCc
Q 043676          158 FCRGKPEPPFD-QVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEA---GVCPRLVELLGH-----PSP  228 (446)
Q Consensus       158 l~~~~~~~~~~-~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~---~~~~~l~~ll~~-----~~~  228 (446)
                      +...-+..... ....+...+..++.+.+..|.+.|+....|     +... .++..   .++|.+...+..     =+.
T Consensus       311 ile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N-----~~i~-~li~~n~~~IlPii~p~L~~~s~~HWn~  384 (449)
T 2npp_B          311 ILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNN-----EYIM-SLISDNAAKILPIMFPSLYRNSKTHWNK  384 (449)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGC-----HHHH-HHHHTTHHHHHHHHHHHHTSCTTCCSST
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCC-----HHHH-HHHHhchhhhHHhhHHHHHHHHHHhcCH
Confidence            44332221221 224566677778888899999988755432     2112 22221   345666665533     145


Q ss_pred             cchhHHHHHHHHhhcCCchhh
Q 043676          229 SVLTPALRTVGNIVTGDDFQT  249 (446)
Q Consensus       229 ~~~~~a~~~l~~l~~~~~~~~  249 (446)
                      .++..+..++..+...++...
T Consensus       385 ~V~~la~~vlk~l~e~d~~lf  405 (449)
T 2npp_B          385 TIHGLIYNALKLFMEMNQKLF  405 (449)
T ss_dssp             THHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHCHHHH
Confidence            688888888887777666543

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=83.68  E-value=1.9  Score=35.21  Aligned_cols=71  Identities=13%  Similarity=0.191  Sum_probs=54.1

Q ss_pred             hHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhc-CCCHHHHHHHHHHHH
Q 043676          344 VKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQS-HDNNEIHEKSVKIFK  422 (446)
Q Consensus       344 i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~-~~~~~v~~~a~~~l~  422 (446)
                      +..|..-+.+.++.++..|+..|..+++.+...            |...+....+++.|..+.. ..+++|+++...++.
T Consensus        47 ~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~------------f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~  114 (226)
T 3zyq_A           47 VNSIKKKVNDKNPHVALYALEVMESVVKNCGQT------------VHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQ  114 (226)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHH------------HHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchH------------HHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence            455666677899999999999999999987764            4566666666777766653 457889999999888


Q ss_pred             HhcC
Q 043676          423 TYWC  426 (446)
Q Consensus       423 ~~~~  426 (446)
                      .+..
T Consensus       115 ~W~~  118 (226)
T 3zyq_A          115 AWAH  118 (226)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7743

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1

Probab=82.27  E-value=4.4  Score=32.83  Aligned_cols=71  Identities=15%  Similarity=0.187  Sum_probs=53.0

Q ss_pred             hHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhc-CCCHHHHHHHHHHHH
Q 043676          344 VKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQS-HDNNEIHEKSVKIFK  422 (446)
Q Consensus       344 i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~-~~~~~v~~~a~~~l~  422 (446)
                      +..|..-|.++++.++..++..|..++..+...            |...+.....++.+..+.. ..+.+|++++..+++
T Consensus        44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~------------f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~  111 (220)
T 1dvp_A           44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAP------------VHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQ  111 (220)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHH------------HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            444555667889999999999999999987654            4566666666777666654 457889999888888


Q ss_pred             HhcC
Q 043676          423 TYWC  426 (446)
Q Consensus       423 ~~~~  426 (446)
                      .+..
T Consensus       112 ~W~~  115 (220)
T 1dvp_A          112 TWAY  115 (220)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7743

>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20

Probab=81.90  E-value=18  Score=32.11  Aligned_cols=191  Identities=12%  Similarity=0.026  Sum_probs=96.4

Q ss_pred             HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676           81 TNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR  160 (446)
Q Consensus        81 ~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  160 (446)
                      ....++...+..|+.++.++|+.-|...-.+|..+-..-...|..+.+ .+-..+.+.+.......-....+.+++.+..
T Consensus       167 ~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fiye~e~~~GIaeLLeilgsIIn  245 (392)
T 2jak_A          167 AKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIIN  245 (392)
T ss_dssp             HTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHTSSCCCSCHHHHHHHHHHHHH
T ss_pred             hhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCCCCHHHHHHHHHHHHh
Confidence            344455567888999999999999999888887776544444544433 1233455555333334444567777777776


Q ss_pred             CCCCCC-hhhhhhhHHHHHHhhcCCC-HhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHH
Q 043676          161 GKPEPP-FDQVRPALPALAQLVHSND-EDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTV  238 (446)
Q Consensus       161 ~~~~~~-~~~~~~~~~~l~~ll~~~~-~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l  238 (446)
                      +....- .....-....++.+.+... .........|+......++.....+     +..+++.=-..+..-...-+.-+
T Consensus       246 gfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~el  320 (392)
T 2jak_A          246 GFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNEL  320 (392)
T ss_dssp             TCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHSSCSSCCTTHHHHHHHH
T ss_pred             ccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHH-----HHHHHHhCCCCCchHHHHHHHHH
Confidence            652221 1222233455555555432 2223334444444444444333322     22222221112221122223334


Q ss_pred             HHhhcCC-chhhHHHHhcCChHHHHHHhccCchHHHHHHHHH
Q 043676          239 GNIVTGD-DFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISW  279 (446)
Q Consensus       239 ~~l~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~  279 (446)
                      ..+.... +.....+ ...++..+...+.++ +..|.+.|+.
T Consensus       321 eeiLe~~~~~~f~~i-~~~lF~~la~ci~S~-hfqVAErAL~  360 (392)
T 2jak_A          321 EEILDVIEPSEFVKI-MEPLFRQLAKCVSSP-HFQVAERALY  360 (392)
T ss_dssp             HHHHHTCCHHHHHHH-HHHHHHHHHHHHTCS-SHHHHHHHHG
T ss_pred             HHHHHhCCHHHHHHH-HHHHHHHHHHHHcCC-cHHHHHHHHH
Confidence            4443322 2222222 223566677777777 7777776654

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=80.77  E-value=30  Score=30.76  Aligned_cols=228  Identities=11%  Similarity=0.100  Sum_probs=118.4

Q ss_pred             hhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCccchhHHHHHHHHhhcCCc---
Q 043676          171 RPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLTPALRTVGNIVTGDD---  246 (446)
Q Consensus       171 ~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~~a~~~l~~l~~~~~---  246 (446)
                      ..++-.|+.++.+.|+.=|...-.++..+-..-.... .++...+-..+.+.+.. ....-....+.+++.+..+-.   
T Consensus       128 ~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R-~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PL  206 (403)
T 3fga_B          128 QKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLR-AYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPL  206 (403)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSC
T ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCc
Confidence            4577889999999999999888888877654333222 22222233344444333 223334566777777765431   


Q ss_pred             -hhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc---CCcchHHHHHHH
Q 043676          247 -FQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQN---AEFDTKKEAAWA  322 (446)
Q Consensus       247 -~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~---~~~~v~~~a~~a  322 (446)
                       +.-..+    +...|+.+-+...-......-..++..+...++....        +.+..+++.   .++.-...-+.-
T Consensus       207 keehk~f----l~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~--------~vi~~LLk~WP~tns~KevlFL~E  274 (403)
T 3fga_B          207 KEEHKIF----LLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTE--------PVVMALLKYWPKTHSPKEVMFLNE  274 (403)
T ss_dssp             CHHHHHH----HHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHH--------HHHHHHHHTCCSSCHHHHHHHHHH
T ss_pred             hHHHHHH----HHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHH--------HHHHHHHHhCCCCCcHHHHHHHHH
Confidence             111111    1223333433331222223334444444443333222        122223332   233323333444


Q ss_pred             HHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHH-----HHHhhhhhhcccCCCCccchHHHHHHHhC
Q 043676          323 ISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLEN-----ILKVGEAERNMGTTIGDVNQYAQFVEEAG  397 (446)
Q Consensus       323 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~-----l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  397 (446)
                      +..+....++.....+.. .....+..++.+++-.|.+.|+....+     ++......            ....+    
T Consensus       275 le~iLe~~~~~~f~~i~~-~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~------------IlPii----  337 (403)
T 3fga_B          275 LEEILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAK------------ILPIM----  337 (403)
T ss_dssp             HHHHHTTCCHHHHHHHHH-HHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHH------------HHHHH----
T ss_pred             HHHHHHhCCHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHH------------HHHHH----
Confidence            455665556665555332 257778888899999999888755422     22111100            11111    


Q ss_pred             hHHHHHH-hhcCCCHHHHHHHHHHHHHhcCCCC
Q 043676          398 GLEKIEN-LQSHDNNEIHEKSVKIFKTYWCGRN  429 (446)
Q Consensus       398 ~~~~l~~-l~~~~~~~v~~~a~~~l~~~~~~~~  429 (446)
                       .+.|.+ ..+|-|+.++..+..++..+.+-+.
T Consensus       338 -~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~  369 (403)
T 3fga_B          338 -FPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQ  369 (403)
T ss_dssp             -HHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSC
T ss_pred             -HHHHHHHHHHccCHHHHHHHHHHHHHHHHhCH
Confidence             333433 4678899999999999988766543

>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2

Probab=80.75  E-value=5.4  Score=30.25  Aligned_cols=71  Identities=13%  Similarity=0.169  Sum_probs=53.0

Q ss_pred             hHHHHhccc-CCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHH-HHHhhc---CCCHHHHHHHH
Q 043676          344 VKPLCDLLL-CSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEK-IENLQS---HDNNEIHEKSV  418 (446)
Q Consensus       344 i~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-l~~l~~---~~~~~v~~~a~  418 (446)
                      +..|..-+. .+++.++..|+..|..+++.+...            |...+.....++. +..+..   .+...|++++.
T Consensus        55 ~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~------------fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil  122 (157)
T 1elk_A           55 LRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHR------------FHVLVASQDFVESVLVRTILPKNNPPTIVHDKVL  122 (157)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHH------------HHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHH
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHH------------HHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHH
Confidence            445555565 578999999999999999987654            5677777777777 666653   24568999999


Q ss_pred             HHHHHhcC
Q 043676          419 KIFKTYWC  426 (446)
Q Consensus       419 ~~l~~~~~  426 (446)
                      .++..+..
T Consensus       123 ~li~~W~~  130 (157)
T 1elk_A          123 NLIQSWAD  130 (157)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988754

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=80.71  E-value=0.79  Score=37.44  Aligned_cols=73  Identities=10%  Similarity=0.112  Sum_probs=53.9

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcC
Q 043676            3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIAS   75 (446)
Q Consensus         3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~   75 (446)
                      ++..|.+.|++.++.+++.|+..|-.+...-+.....++....++..|.+++.....+.++..++..+...+.
T Consensus        46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  118 (226)
T 3zyq_A           46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH  118 (226)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            3567788889999999999999888776654334455666667777787777654447888888888877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	446
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	1e-103
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	6e-89
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-08
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	6e-38
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-15
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	7e-14
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	7e-09
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-22
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-20
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-16
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-16
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	6e-10
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-09
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	6e-20
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	8e-07
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	5e-12
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	1e-11
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	2e-11
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-10
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	3e-10
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	9e-06
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	0.003
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	1e-09
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	6e-08
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	1e-06
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	9e-05
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	3e-04
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	2e-06
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	5e-04
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	8e-06
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	2e-05
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	3e-04
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	0.004
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	4e-04

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  313 bits (803), Expect = e-103
 Identities = 235/434 (54%), Positives = 299/434 (68%), Gaps = 10/434 (2%)

Query: 3   SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQL 62
             P +   + SDD   QL AT   R++LS +  PPI+ VIQ+GVVPR VEF+       L
Sbjct: 77  ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEML 136

Query: 63  QYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRC 122
           Q EAAW L NIASGTS  T VV+D  AVP+F++LL + S +V+EQA+WALGNVAGDS   
Sbjct: 137 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 196

Query: 123 RDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK-PEPPFDQVRPALPALAQLV 181
           RD VL   A+ P+L  L    K S++R AT TLSN CRGK P+P +  V  ALP LA+L+
Sbjct: 197 RDYVLQCNAMEPIL-GLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 255

Query: 182 HSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI 241
           +S D + L  ACW++SYL+DG  + IQAVI+  +  RLVELL H S  V TPALR VGNI
Sbjct: 256 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 315

Query: 242 VTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLI 301
           VTG+D QTQ +IN G +P L  +L    E  IKKE  W ISNITAGN EQIQAVIDA LI
Sbjct: 316 VTGNDLQTQVVINAGVLPALRLLLSSPKEN-IKKEACWTISNITAGNTEQIQAVIDANLI 374

Query: 302 RPIVNLLQNAEFDTKKEAAWAISNATSGGT--QEQIKHLVREGCVKPLCDLLLCSDPEIV 359
            P+V LL+ AE+ TKKEA WAISNA+SGG    + I++LV +GC+KPLCDLL  +D  I+
Sbjct: 375 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 434

Query: 360 TVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVK 419
            V L  LENILK+GEA++       ++N+ A F+E+AGG+EKI N Q ++N++I+EK+ K
Sbjct: 435 EVTLDALENILKMGEADKEARGL--NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 492

Query: 420 IFKTYWCGRNEEED 433
           I +TY+    EEED
Sbjct: 493 IIETYF---GEEED 503

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  275 bits (703), Expect = 6e-89
 Identities = 198/429 (46%), Positives = 280/429 (65%), Gaps = 13/429 (3%)

Query: 2   GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQ 61
            S   +V G+ S++   QL+AT  +RKLLS ++ PPI+ +I++G++P+FV FL + D   
Sbjct: 13  WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP 72

Query: 62  LQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPR 121
           +Q+E+AW L NIASGTSE T  V+D GA+P F+ LL+SP   + EQAVWALGN+AGD   
Sbjct: 73  IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 132

Query: 122 CRDLVLSQGALIPLLAELN----EHAKLSMLRNATRTLSNFCRGKPE-PPFDQVRPALPA 176
            RDLV+  GA+ PLLA L            LRN T TLSN CR K   PP D V   LP 
Sbjct: 133 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 192

Query: 177 LAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALR 236
           L +L+H ND +VL  +CW++SYL DG N++I+ V++ GV P+LV+LLG     ++TPALR
Sbjct: 193 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 252

Query: 237 TVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVI 296
            +GNIVTG D QTQ +I+ GA+     +L +    I  KE +W +SNITAG ++QIQ V+
Sbjct: 253 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ-KEATWTMSNITAGRQDQIQQVV 311

Query: 297 DAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDP 356
           + GL+  +V +L  A+F T+KEAAWAI+N TSGGT EQI +LV  G ++PL +LL   D 
Sbjct: 312 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 371

Query: 357 EIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEK 416
           +I+ V L  + NI +  E        +G+  + +  +EE GGL+KIE LQ H+N  +++ 
Sbjct: 372 KIIQVILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKA 424

Query: 417 SVKIFKTYW 425
           S+ + + Y+
Sbjct: 425 SLNLIEKYF 433

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.7 bits (127), Expect = 2e-08
 Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 2/126 (1%)

Query: 255 HGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEF- 313
           + +V  ++  +  N+ E   +        ++   +  I  +I AGLI   V+ L   +  
Sbjct: 12  NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCS 71

Query: 314 DTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVG 373
             + E+AWA++N  S GT EQ K +V  G +     LL      I    +  L NI   G
Sbjct: 72  PIQFESAWALTNIAS-GTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG 130

Query: 374 EAERNM 379
            A R++
Sbjct: 131 SAFRDL 136

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  141 bits (355), Expect = 6e-38
 Identities = 60/451 (13%), Positives = 127/451 (28%), Gaps = 70/451 (15%)

Query: 47  VPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVRE 106
           +P+ V++L  +D  + Q   A+ + +           V   G +   V LL SP+ +V++
Sbjct: 4   IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 107 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPP 166
            A  AL N+   S   +     Q  +   ++ L       + +  T  L N         
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 167 FDQVRPALPALAQLV---------------HSNDEDVLTYACWSLSYLADGTNDKIQAVI 211
                       +++                  D +V   A   L  L+     +     
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 212 EAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIIN--HGAVPYLLDMLVHNH 269
            +G+   L+  +     +      ++V N +      +  +          L     + +
Sbjct: 183 YSGLIDSLMAYV-QNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241

Query: 270 ------------EEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKK 317
                        + +              N +    +  +  IR  +NL+  ++ D   
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301

Query: 318 EAAWAISNATSGGTQEQI-----KHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKV 372
           EA        +               ++E  +  +  LL   + ++V      L N+ + 
Sbjct: 302 EACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361

Query: 373 GEAERNMGTTI---------------------------------GDVNQYAQFVEEAGGL 399
               R MG  +                                     Q A+    +  L
Sbjct: 362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSML 421

Query: 400 EKIENL-QSHDNNEIHEKSVKIFKTYWCGRN 429
             I NL +S  + +  E +  +    W  + 
Sbjct: 422 NNIINLCRSSASPKAAEAARLLLSDMWSSKE 452

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.0 bits (185), Expect = 1e-15
 Identities = 28/302 (9%), Positives = 75/302 (24%), Gaps = 16/302 (5%)

Query: 130 GALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRP-ALPALAQLVHSNDEDV 188
           G  IP   +                + + C           +   +  L  L+ S +++V
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60

Query: 189 LTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQ 248
              A  +L  L   +                V LL     + +   L  +   ++  D  
Sbjct: 61  QQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120

Query: 249 TQCIINHGAVPYL--------------LDMLVHNHEEIIKKEISWIISNITAGNREQIQA 294
            + +I                       +M     +  +    +  + N+++ +  +   
Sbjct: 121 KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTM 180

Query: 295 VIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCS 354
              +GLI  ++  +QN    ++ +     +                    + L      +
Sbjct: 181 RNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240

Query: 355 DPEIVTV-CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEI 413
             E  +  C     + +     +  +     +                +  +     +  
Sbjct: 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDAT 300

Query: 414 HE 415
            E
Sbjct: 301 LE 302

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (172), Expect = 7e-14
 Identities = 37/308 (12%), Positives = 89/308 (28%), Gaps = 28/308 (9%)

Query: 44  SGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDD 103
           SG              P++ + A   L N++S  +    +    G +   +  + +    
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200

Query: 104 VR------EQAVWALGNVAGDSPRCRDLVLSQGALIPL-------LAELNEHAKLSMLRN 150
            R      E  +  L N++            Q                   +    M+ N
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260

Query: 151 ATRTLSNFCRGKPEPPFDQVRP-ALPALAQLVHSND-EDVLTYACWSLSYLADGTNDKIQ 208
                       P+         A+     L+  +  +  L     +L  L         
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320

Query: 209 A-----VIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLD 263
                  ++    P++  LL   +  V+      + N+          ++ +   P +  
Sbjct: 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTR 378

Query: 264 MLVHN-----HEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFD-TKK 317
           +L  +     + E I     + + N+ A   +  +    + ++  I+NL +++      +
Sbjct: 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAE 438

Query: 318 EAAWAISN 325
            A   +S+
Sbjct: 439 AARLLLSD 446

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (131), Expect = 7e-09
 Identities = 21/130 (16%), Positives = 45/130 (34%), Gaps = 9/130 (6%)

Query: 39  EKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLS 98
              ++   +P+     ++     +    A +L N++       + V+ +   P   +LL+
Sbjct: 325 LIGLKEKGLPQIARL-LQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLT 381

Query: 99  S------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNAT 152
           S       S+D+   A + + N+    P+      S   L  ++      A       A 
Sbjct: 382 SHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAAR 441

Query: 153 RTLSNFCRGK 162
             LS+    K
Sbjct: 442 LLLSDMWSSK 451

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.1 bits (237), Expect = 5e-22
 Identities = 68/473 (14%), Positives = 139/473 (29%), Gaps = 62/473 (13%)

Query: 1   LGSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQS-GVVPRFVEFLMREDY 59
             + P L   +  +D  +  +A  +  +L   + +     +++S  +V   V  +   + 
Sbjct: 16  TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS--RHAIMRSPQMVSAIVRTMQNTND 73

Query: 60  PQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDS 119
            +     A  L N++    E    +   G +P  VK+L SP D V   A+  L N+    
Sbjct: 74  VETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 132

Query: 120 PRCRDLVLSQGALIPLLAE----------------------------------------- 138
              +  V   G L  ++A                                          
Sbjct: 133 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN 192

Query: 139 -LNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLS 197
            +  +    +L   +R L          P       + AL   +    + ++    W+L 
Sbjct: 193 IMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 252

Query: 198 YLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGA 257
            L+D    +       G+   LV+LLG    +V+T A   + N+   +      +   G 
Sbjct: 253 NLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG 309

Query: 258 VPYLLDMLVHNHEEIIKKE----ISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEF 313
           +  L+  ++   +     E        +++          AV     +  +V LL     
Sbjct: 310 IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH 369

Query: 314 DTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIG------LE 367
               +A   +    +         L  +G +  L  LL+ +  +      +G      +E
Sbjct: 370 WPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE 428

Query: 368 NILKVGEAERNMGT--TIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSV 418
            +      E   G    +         +     +     L       I   + 
Sbjct: 429 GVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAA 481

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.5 bits (225), Expect = 2e-20
 Identities = 69/483 (14%), Positives = 137/483 (28%), Gaps = 87/483 (18%)

Query: 5   PALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQY 64
            A+V  + + ++      T  +   LS  R   +  + +SG +P  V+ L       + +
Sbjct: 62  SAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPV-DSVLF 119

Query: 65  EAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD 124
            A   L N+          V   G +   V LL+  +          L  +A  +   + 
Sbjct: 120 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 179

Query: 125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSN 184
           ++L+ G    L+  +  +    +L   +R L          P       + AL   +   
Sbjct: 180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP 239

Query: 185 DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTG 244
            + ++    W+L  L+D    +       G+   LV+LLG    +V+T A   + N+   
Sbjct: 240 SQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296

Query: 245 DDFQTQCIIN-----------------------------------------------HGA 257
           +      +                                                 H  
Sbjct: 297 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYG 356

Query: 258 VPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKK 317
           +P ++ +L       + K    +I N+          + + G I  +V LL  A  DT++
Sbjct: 357 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQR 415

Query: 318 EAAWAISNATSGGT--------------------QEQIKHLVREGCVKPLCDLLLCSDPE 357
             +   +                                 +     +     LL      
Sbjct: 416 RTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIEN 475

Query: 358 IVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKS 417
           I  V    L  + +  E               A+ +E  G    +  L    N  +   +
Sbjct: 476 IQRVAAGVLCELAQDKE--------------AAEAIEAEGATAPLTELLHSRNEGVATYA 521

Query: 418 VKI 420
             +
Sbjct: 522 AAV 524

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.2 bits (193), Expect = 2e-16
 Identities = 29/237 (12%), Positives = 77/237 (32%), Gaps = 2/237 (0%)

Query: 199 LADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAV 258
           + +  N +  A +     P L +LL      V+  A   V  +   +  +   + +   V
Sbjct: 2   VVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 61

Query: 259 PYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKE 318
             ++  + + ++    +  +  + N++  +RE + A+  +G I  +V +L +        
Sbjct: 62  SAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFY 120

Query: 319 AAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERN 378
           A   + N      +     +   G ++ +  LL  ++ + + +    L+ +    +  + 
Sbjct: 121 AITTLHNLLL-HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 179

Query: 379 MGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCGRNEEEDAL 435
           +    G        +      + +              S K       G       L
Sbjct: 180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 236

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.8 bits (192), Expect = 3e-16
 Identities = 60/362 (16%), Positives = 116/362 (32%), Gaps = 25/362 (6%)

Query: 30  LSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGA 89
           L++        ++ SG     V  +    Y +L       ++ + S  S N   +++ G 
Sbjct: 170 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLL-WTTSRVLKVLSVCSSNKPAIVEAGG 228

Query: 90  VPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLR 149
           +      L+ PS  + +  +W L N++  + +   +    G L+ LL   + +       
Sbjct: 229 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAG 288

Query: 150 NATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVL--TYACWSLSYLADGTNDKI 207
             +    N  + K          AL          ++       A   L+          
Sbjct: 289 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQ 348

Query: 208 QAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVH 267
            AV      P +V+LL  PS   L  A   +   +         +   GA+P L+ +LV 
Sbjct: 349 NAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR 408

Query: 268 NHEEIIKKEISWIISN--------------------ITAGNREQIQAVIDAGLIRPIVNL 307
            H++  ++                            I A +      +     I   V L
Sbjct: 409 AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQL 468

Query: 308 LQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLE 367
           L +   + ++ AA  +        +E  + +  EG   PL +LL   +  + T     L 
Sbjct: 469 LYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 526

Query: 368 NI 369
            +
Sbjct: 527 RM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 6e-10
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 2/76 (2%)

Query: 41  VIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSP 100
           +     +P FV+ L+      +Q  AA VL  +A    E    +   GA     +LL S 
Sbjct: 456 IRGLNTIPLFVQ-LLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSR 513

Query: 101 SDDVREQAVWALGNVA 116
           ++ V   A   L  ++
Sbjct: 514 NEGVATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (137), Expect = 1e-09
 Identities = 39/180 (21%), Positives = 63/180 (35%), Gaps = 25/180 (13%)

Query: 43  QSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSD 102
               +P  V+ L    +  L      ++ N+A     N   + + GA+P  V+LL     
Sbjct: 353 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRAHQ 411

Query: 103 DVR----------------------EQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELN 140
           D +                      E    AL  +A D    R ++      IPL  +L 
Sbjct: 412 DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD-VHNRIVIRGLNT-IPLFVQLL 469

Query: 141 EHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLA 200
                ++ R A   L    + K      +   A   L +L+HS +E V TYA   L  ++
Sbjct: 470 YSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.0 bits (214), Expect = 6e-20
 Identities = 39/235 (16%), Positives = 82/235 (34%), Gaps = 5/235 (2%)

Query: 40  KVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFV-KLLS 98
           +V+   + P   E     D  Q +  A  +L ++     +N         + + V + L 
Sbjct: 12  RVLSQPMPPTAGEAEQAAD-QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLE 69

Query: 99  SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNF 158
           + +  +R +A   +G  + +    ++ VL  GAL  LL  L+  A  ++   A   +S  
Sbjct: 70  AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCL 129

Query: 159 CRGK-PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCP 217
            R +               L + +    + +   + + L  L  G  +    +   G+  
Sbjct: 130 VREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 189

Query: 218 RLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQ-CIINHGAVPYLLDMLVHNHEE 271
           +LV L+           L  + ++VT      + C      +  LL       ++
Sbjct: 190 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQ 244

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 8e-07
 Identities = 23/133 (17%), Positives = 51/133 (38%), Gaps = 6/133 (4%)

Query: 14  DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINI 73
             ++++++A      L+                    +   M++   +L+ ++A++L N+
Sbjct: 114 ACDTVRVKALFAISCLVRE--QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNL 171

Query: 74  ASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP----RCRDLVLSQ 129
             G  E+   +   G V   V L+ +      E  + AL ++  D P     CR+  L  
Sbjct: 172 LVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGL 231

Query: 130 GALIPLLAELNEH 142
             L+    +L + 
Sbjct: 232 EELLRHRCQLLQQ 244

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (145), Expect = 2e-10
 Identities = 42/296 (14%), Positives = 88/296 (29%), Gaps = 35/296 (11%)

Query: 4    FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQ 63
               L   V+S   +L  + +  S             K   + V     +         ++
Sbjct: 773  LRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIR 832

Query: 64   YEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPR-- 121
              A   L  +      +  + +      + ++  SSPS++V+  A +ALG+++  +    
Sbjct: 833  LLALLSLGEVGHHIDLSGQLEL----KSVILEAFSSPSEEVKSAASYALGSISVGNLPEY 888

Query: 122  -------CRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPA- 173
                          Q  L+  L E+   A +  L+     +        E   +  R   
Sbjct: 889  LPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVV 948

Query: 174  ---------------LPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPR 218
                           LP L   + S      +    ++ +        I  +++      
Sbjct: 949  AECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLK-NCIGD 1007

Query: 219  LVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGA--VPYLLDMLVHNHEEI 272
             ++ L  P  +V   AL T  +       +   I +     +P+L +      E I
Sbjct: 1008 FLKTLEDPDLNVRRVALVTFNSAA---HNKPSLIRDLLDTVLPHLYNETKVRKELI 1060

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.1 bits (144), Expect = 3e-10
 Identities = 43/308 (13%), Positives = 95/308 (30%), Gaps = 21/308 (6%)

Query: 60  PQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDS 119
              ++ A   L+      S   +   +   V + +KLL   + +V+  AV  LG +    
Sbjct: 17  KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLV--- 73

Query: 120 PRCRDLVLSQ--GALIPLLAELNE---HAKLSMLRNATRTLSNFCRGKPEPPFDQVRPAL 174
            + ++  +      L   +    E         L+     L     G         +   
Sbjct: 74  SKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITG 133

Query: 175 PALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPA 234
              + +    D  V   A   ++ +       +     + +   L+  L  P  +V    
Sbjct: 134 RLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS-ILTCLLPQLTSPRLAVRKRT 192

Query: 235 LRTVGNIVT--GDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQI 292
           +  +G++V   G+            + +LL  L  N      +     I+ I+     +I
Sbjct: 193 IIALGHLVMSCGNIVFVD------LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRI 246

Query: 293 QAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLL 352
              ++  +I  +V      + + ++    A  +      +E   H+     +  +C   L
Sbjct: 247 GEYLEK-IIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVST---IINICLKYL 302

Query: 353 CSDPEIVT 360
             DP    
Sbjct: 303 TYDPNYNY 310

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 9e-06
 Identities = 24/108 (22%), Positives = 37/108 (34%), Gaps = 2/108 (1%)

Query: 83   VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEH 142
            ++     +P     L S S   R   V A+     D P+  D +L     I    +  E 
Sbjct: 957  LIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKN--CIGDFLKTLED 1014

Query: 143  AKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLT 190
              L++ R A  T ++    KP    D +   LP L        E +  
Sbjct: 1015 PDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIRE 1062

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 34/254 (13%), Positives = 81/254 (31%), Gaps = 27/254 (10%)

Query: 173 ALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLT 232
            +  L + + S+D+D    A   L       + K+    E  V   +++LL   +  V  
Sbjct: 4   HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQN 63

Query: 233 PALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQI 292
            A++ +G +V+         I    V  L   ++ + E++       + + I        
Sbjct: 64  LAVKCLGPLVSKVKEYQVETI----VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS 119

Query: 293 QAVIDAGLIRPIVNLLQNA-----EFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPL 347
            + + A + + I   L +A     +   + EA   +++  S      +        +  L
Sbjct: 120 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH--PSILTCL 177

Query: 348 CDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQS 407
              L      +    +I L +++                  +   +E       +  L  
Sbjct: 178 LPQLTSPRLAVRKRTIIALGHLVMSCGNI-----------VFVDLIEHL-----LSELSK 221

Query: 408 HDNNEIHEKSVKIF 421
           +D+       ++  
Sbjct: 222 NDSMSTTRTYIQCI 235

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 6e-08
 Identities = 40/300 (13%), Positives = 92/300 (30%), Gaps = 32/300 (10%)

Query: 15  DNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIA 74
            N+++L AT      L F +    ++  +  ++    E     D  +++  A   L+ I 
Sbjct: 186 SNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIM 244

Query: 75  SGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIP 134
           S   +     +      I ++ + S  D+V  Q +    NV  +                
Sbjct: 245 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGR 304

Query: 135 LLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACW 194
                ++      L+     L+                          +  ++      W
Sbjct: 305 PPEHTSKFYAKGALQYLVPILTQ-----------------------TLTKQDENDDDDDW 341

Query: 195 SLSYLADGTNDKIQAVIEAGVC----PRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQ 250
           +    A      +    E  +     P + E + +P       A+   G I+ G +    
Sbjct: 342 NPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQL 401

Query: 251 CIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQN 310
             +   A+P L++++       ++   +W +  I        +A I+   + P++  L  
Sbjct: 402 KPLVIQAMPTLIELMKDPSVV-VRDTAAWTVGRIC---ELLPEAAINDVYLAPLLQCLIE 457

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 1e-06
 Identities = 43/347 (12%), Positives = 92/347 (26%), Gaps = 65/347 (18%)

Query: 40  KVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGA--VPIFVKLL 97
            V +  ++P  +  L    +          ++ + +        +I +    +P  ++ L
Sbjct: 386 NVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCL 445

Query: 98  SSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAK--LSMLRNATRTL 155
           S     VR    W L   A            +  +  LL  + +  K       +A  TL
Sbjct: 446 SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATL 505

Query: 156 SNFCRGKPEPPFDQVRP----------------ALPALAQLVHS---------------- 183
                 +  P    +                     A+  L  S                
Sbjct: 506 EEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMP 565

Query: 184 ----------NDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH-------- 225
                     +++  L      LS +A           E  V  R V L+          
Sbjct: 566 PLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEP-VYQRCVNLVQKTLAQAMLN 624

Query: 226 ---------PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKE 276
                    P    +  AL  +  +  G     + ++    +  L+   + +    +++ 
Sbjct: 625 NAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQS 684

Query: 277 ISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAI 323
              ++ ++T    + ++  I    +  +   L          A WAI
Sbjct: 685 SFALLGDLTKACFQHVKPCIAD-FMPILGTNLNPEFISVCNNATWAI 730

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 9e-05
 Identities = 46/309 (14%), Positives = 98/309 (31%), Gaps = 14/309 (4%)

Query: 13  SDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLIN 72
            D+ +  L    L   + +  +N P    +   +    +  +     P ++     ++  
Sbjct: 58  EDEPTRSLSGLILKNNVKAHFQNFPNG--VTDFIKSECLNNIGDSS-PLIRATVGILITT 114

Query: 73  IASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQG-- 130
           IAS              +P    LL S   +  E A  AL  +  DS    D  +     
Sbjct: 115 IASKGELQNW----PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPL 170

Query: 131 -ALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVL 189
             +IP   +  +H+   +  +A   ++ F   + +     +      L  L    + +V 
Sbjct: 171 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVR 230

Query: 190 TYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQT 249
              C +L  L +   D++   +   +   +++       +V   AL      +T  +   
Sbjct: 231 KNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENV---ALEACEFWLTLAEQPI 286

Query: 250 QCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQ 309
              +    +P L+ +LV+  +      I               +  I     R      Q
Sbjct: 287 CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQ 346

Query: 310 NAEFDTKKE 318
           + E   ++E
Sbjct: 347 HDEDGIEEE 355

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 25/160 (15%), Positives = 58/160 (36%), Gaps = 14/160 (8%)

Query: 35  NPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFV 94
              IE+++    +   +   M++  P+++  +  +L ++     ++    I    +PI  
Sbjct: 654 GGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIAD-FMPILG 712

Query: 95  KLLSSPSDDVREQAVWALGNVA-----GDSPRCRDLVLSQGALIPLLAELNEHAKLSMLR 149
             L+     V   A WA+G ++        P    ++     L+ ++   N     ++L 
Sbjct: 713 TNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVL---HQLVEIINRPNTPK--TLLE 767

Query: 150 NATRTLSNFCRGKPE---PPFDQVRPALPALAQLVHSNDE 186
           N   T+       P+   P   Q         + +  N+E
Sbjct: 768 NTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEE 807

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 18/147 (12%), Positives = 48/147 (32%), Gaps = 9/147 (6%)

Query: 54  LMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALG 113
            + +    ++  A   L  +     +          +P  + +   P+   R   ++ + 
Sbjct: 449 WLVDHVYAIREAATSNLKKLVEKFGKEW---AHATIIPKVLAMSGDPNYLHRMTTLFCIN 505

Query: 114 NVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPA 173
            ++    +  D+      ++P +  +      ++  N  ++L                  
Sbjct: 506 VLSEVCGQ--DITTKH--MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSE--V 559

Query: 174 LPALAQLVHSNDEDVLTYACWSLSYLA 200
            P L +L    D DV  +A  +L+ L+
Sbjct: 560 KPILEKLTQDQDVDVKYFAQEALTVLS 586

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 5e-04
 Identities = 21/194 (10%), Positives = 55/194 (28%), Gaps = 12/194 (6%)

Query: 48  PRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQ 107
              +  L  +   +++      +  +A           D     + +  L      +RE 
Sbjct: 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVDHVYAIREA 460

Query: 108 AVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPF 167
           A   L  +     +      +   +IP +  ++              ++       +   
Sbjct: 461 ATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDIT 516

Query: 168 DQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPS 227
            +    LP + ++      +V      SL  +    ++     +++ V P L +L     
Sbjct: 517 TKH--MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS---TLQSEVKPILEKLTQDQD 571

Query: 228 PSVLTPALRTVGNI 241
             V   A   +  +
Sbjct: 572 VDVKYFAQEALTVL 585

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 44.8 bits (104), Expect = 8e-06
 Identities = 21/252 (8%), Positives = 51/252 (20%), Gaps = 29/252 (11%)

Query: 54  LMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALG 113
           L+ +     +  +A VL                  AV + ++  S  +   R+   + LG
Sbjct: 27  LLDDHNSLKRISSARVLQLRG-----------GQDAVRLAIEFCSDKNYIRRDIGAFILG 75

Query: 114 NVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPA 173
            +                   L           +   A  + +  C+  P      V  +
Sbjct: 76  QIKICKKCE------DNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQS 129

Query: 174 LPALAQLVHSNDEDVLTYACWSLSYLA-------DGTNDKIQAVIEAGVCPRLVELLGHP 226
                    +                            +       A             
Sbjct: 130 QITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDI 189

Query: 227 SPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA 286
               +         +            +   +  L D L    +  +  +I      +  
Sbjct: 190 RDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDEL---KKNTVYDDIIEAAGEL-- 244

Query: 287 GNREQIQAVIDA 298
           G++  +  +   
Sbjct: 245 GDKTLLPVLDTM 256

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 21/257 (8%), Positives = 48/257 (18%), Gaps = 36/257 (14%)

Query: 94  VKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATR 153
            +LL   +   R  +   L    G               + L  E               
Sbjct: 25  FRLLDDHNSLKRISSARVLQLRGGQ------------DAVRLAIEFCSDKNYIRRDIGAF 72

Query: 154 TLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEA 213
            L      K                  ++     V   A  S +            +   
Sbjct: 73  ILGQIKICKKCEDN----VFNILNNMALNDKSACVRATAIESTAQRCKK-----NPIYSP 123

Query: 214 GVCPRLVELLGHPSPSVLTPALRTVG----------NIVTGDDFQTQCIINHGAVPYLLD 263
            +  +        S +V       +            I    D              +  
Sbjct: 124 KIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININK 183

Query: 264 MLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAI 323
               +  +   + +      +       +    D  ++  + + L+        +   A 
Sbjct: 184 YDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKN--TVYDDIIEAA 241

Query: 324 SNATSGGTQEQIKHLVR 340
                 G +  +  L  
Sbjct: 242 GEL---GDKTLLPVLDT 255

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 32/278 (11%), Positives = 75/278 (26%), Gaps = 43/278 (15%)

Query: 90  VPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLR 149
             +    + SP  ++R  +   L  ++ D+                   L +       R
Sbjct: 7   AQLLENSILSPDQNIRLTSETQLKKLSNDNF--------LQFAGLSSQVLIDENTKLEGR 58

Query: 150 NATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQA 209
                                  A   L   + S D              A     ++  
Sbjct: 59  IL---------------------AALTLKNELVSKDSVK-------TQQFAQRWITQVSP 90

Query: 210 VIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNH 269
             +  +    +  L    P +   A + +  I   +            +  ++D      
Sbjct: 91  EAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAW---PELMKIMVDNTGAEQ 147

Query: 270 EEIIKKEISWIISNITAGNREQIQAVIDA--GLIRPIVNLLQNAEF--DTKKEAAWAISN 325
            E +K+     +  +      Q QA++ +   ++  IV   Q+ E     +  A  A+++
Sbjct: 148 PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALAD 207

Query: 326 ATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCL 363
           +         +   R   ++ +C+     D E+     
Sbjct: 208 SLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAF 245

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 33/287 (11%), Positives = 88/287 (30%), Gaps = 19/287 (6%)

Query: 13  SDDNSLQLEATTLSRKLLSFDRNPPIEKV------IQSGVVPRFVEFL---MREDYPQLQ 63
           +      L A TL  +L+S D     +        +      +        +    P++ 
Sbjct: 53  TKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIA 112

Query: 64  YEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDD-VREQAVWALGNVAGDSPRC 122
             AA ++  IA     +         + I V    +   + V+  ++ ALG +   +   
Sbjct: 113 NAAAQLIAAIADIELPHGAW---PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQ 169

Query: 123 RDLVLSQ--GALIPLLAELNEHAKLSMLR-NATRTLSNFCRGKPEP--PFDQVRPALPAL 177
              ++S     LI ++           +R  A   L++             +    +  +
Sbjct: 170 SQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVV 229

Query: 178 AQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRT 237
            +   + D +V   A   L  +       ++  +E  +    +  +  P+  V +  +  
Sbjct: 230 CEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEF 289

Query: 238 VGNIVTG-DDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISN 283
              I     D   +      +     +  + + ++++   ++ +   
Sbjct: 290 WSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQ 336

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 39.7 bits (92), Expect = 4e-04
 Identities = 23/164 (14%), Positives = 42/164 (25%), Gaps = 28/164 (17%)

Query: 87  HGAVPIFVKLLSSPSDDVREQAVWALG-----NVAGDSPRCRDLVLSQGALIPLLAELNE 141
           +  V     L+    + VR    + L       +  D  R   + ++    +  L ++  
Sbjct: 65  YSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAA 124

Query: 142 HAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYAC--WSLSYL 199
                +     +                 R     L + +   D  V            L
Sbjct: 125 DRDYLVRAYVVQ-----------------RIPPGRLFRFMRDEDRQVRKLVAKRLPEESL 167

Query: 200 ADGTNDKI----QAVIEAGVCPRLVELLGHPSPSVLTPALRTVG 239
              T D      + V        L+ELL  P  +V   A+    
Sbjct: 168 GLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHAS 211

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	446
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.85
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.83
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.8
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.77
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.74
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.64
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.5
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.5
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.46
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.44
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.42
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.37
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.31
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.28
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.26
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.23
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.18
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.13
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.03
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.01
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.98
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.97
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.57
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.49
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.74
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.59
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	97.12
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.74
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.72
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.45
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.23
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	95.95
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	95.8
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	94.9
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	93.84
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	92.87
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	90.55
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	90.51
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	90.15
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	89.04
d2jaka1	343	Serine/threonine-protein phosphatase 2A regulatory	88.54
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	87.9
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	86.16

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.7e-47  Score=359.45  Aligned_cols=425  Identities=54%  Similarity=0.828  Sum_probs=388.5

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhH
Q 043676            2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENT   81 (446)
Q Consensus         2 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~   81 (446)
                      +.++.+++.+.++|...+..++..++++++....++.+.+++.|++|.|+++++++.++.++..|+++|.+++.+++...
T Consensus        76 ~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~  155 (503)
T d1wa5b_          76 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT  155 (503)
T ss_dssp             CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            45788999999999999999999999998877677889999999999999999876558899999999999999888888


Q ss_pred             HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676           82 NVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG  161 (446)
Q Consensus        82 ~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  161 (446)
                      ..+.+.|+++.++.+|.+++.++++.++|+|+|++...+.++..+.+.|++++++.++ .+.+..+++.++|++.+++..
T Consensus       156 ~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll-~~~~~~~~~~~~~~l~nl~~~  234 (503)
T d1wa5b_         156 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRG  234 (503)
T ss_dssp             HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhc-ccCCHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999 677889999999999999987


Q ss_pred             C-CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHH
Q 043676          162 K-PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGN  240 (446)
Q Consensus       162 ~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~  240 (446)
                      . +........+++|.+..++.+++++++..+++++.+++...++....+.+.|+++.++.++.++++.++..++.++++
T Consensus       235 ~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~n  314 (503)
T d1wa5b_         235 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN  314 (503)
T ss_dssp             SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHH
Confidence            6 555666778999999999999999999999999999999888888889999999999999999999999999999999


Q ss_pred             hhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHH
Q 043676          241 IVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAA  320 (446)
Q Consensus       241 l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~  320 (446)
                      ++.+.+.....+++.|+++.+..+++++ ++.++..++|+++|++.+++.....+++.|+++.++.++.+.+.+++..|+
T Consensus       315 l~~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~  393 (503)
T d1wa5b_         315 IVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEAC  393 (503)
T ss_dssp             HTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHH
Confidence            9998888888888999999999999998 899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCC--CHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhCh
Q 043676          321 WAISNATSGG--TQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGG  398 (446)
Q Consensus       321 ~aL~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  398 (446)
                      ++|.+++..+  .++....+.+.|+++.|+++++..++++...++++|.+++..++.......  ...+++...+.+.||
T Consensus       394 ~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~--~~~~~~~~~iee~g~  471 (503)
T d1wa5b_         394 WAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARG--LNINENADFIEKAGG  471 (503)
T ss_dssp             HHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHT--CSSCHHHHHHHHTTH
T ss_pred             HHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhc--ccchHHHHHHHHCCC
Confidence            9999998753  356778889999999999999999999999999999999987765432211  245778999999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 043676          399 LEKIENLQSHDNNEIHEKSVKIFKTYWCGRNE  430 (446)
Q Consensus       399 ~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~  430 (446)
                      ++.|+.|++++++++++.|.++|++||+++||
T Consensus       472 ~~~i~~Lq~~~~~~i~~~A~~il~~~f~~~~~  503 (503)
T d1wa5b_         472 MEKIFNCQQNENDKIYEKAYKIIETYFGEEED  503 (503)
T ss_dssp             HHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCCcCC
Confidence            99999999999999999999999999987765

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.8e-46  Score=347.40  Aligned_cols=417  Identities=47%  Similarity=0.807  Sum_probs=380.9

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhH
Q 043676            2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENT   81 (446)
Q Consensus         2 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~   81 (446)
                      +.++.+++.++|+|++.+..|+..++++++...++....+++.|++|.|+++|++.++++++..|+++|.+++..+++.+
T Consensus        13 ~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~   92 (434)
T d1q1sc_          13 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT   92 (434)
T ss_dssp             CCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhh
Confidence            46889999999999999999999999998876566678899999999999999766547899999999999998888999


Q ss_pred             HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcccc----chhHHHHHHHHHHH
Q 043676           82 NVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHA----KLSMLRNATRTLSN  157 (446)
Q Consensus        82 ~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~----~~~~~~~a~~~L~~  157 (446)
                      ..+++.|+++.++.+|.++++++++.++++|+|++.+.+..+..+.+.|+++.++.++....    .....+.+++++.+
T Consensus        93 ~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~  172 (434)
T d1q1sc_          93 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  172 (434)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             hHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999995332    23456788999999


Q ss_pred             hhcCC-CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHH
Q 043676          158 FCRGK-PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALR  236 (446)
Q Consensus       158 l~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~  236 (446)
                      ++... .........++++.+..++.+++++++..+++++.+++...+.....+...|+++.++.++.++++.++..++.
T Consensus       173 ~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~  252 (434)
T d1q1sc_         173 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR  252 (434)
T ss_dssp             HTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred             HhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhh
Confidence            99886 44455567889999999999999999999999999999988877777888899999999999999999999999


Q ss_pred             HHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchH
Q 043676          237 TVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTK  316 (446)
Q Consensus       237 ~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~  316 (446)
                      ++.+++.+++.....+++.|+++.+..++.++ +.+++..+++++++++..+++....+.+.|+++.++.++.+.+++++
T Consensus       253 ~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~  331 (434)
T d1q1sc_         253 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ  331 (434)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHH
T ss_pred             hhhhHHhhhhHHHHHHHhccccchHHHhhccc-chhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHH
Confidence            99999998888888899999999999999998 89999999999999998888888889999999999999999999999


Q ss_pred             HHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHh
Q 043676          317 KEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEA  396 (446)
Q Consensus       317 ~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  396 (446)
                      ..|++++.+++...+++....+.+.|+++.|++++++++++++..++++|.++++.++...       ..+++...+++.
T Consensus       332 ~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~-------~~~~~~~~~~~~  404 (434)
T d1q1sc_         332 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEEC  404 (434)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcC-------CcHHHHHHHHHc
Confidence            9999999999988888888999999999999999999999999999999999998877542       456688999999


Q ss_pred             ChHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 043676          397 GGLEKIENLQSHDNNEIHEKSVKIFKTYWC  426 (446)
Q Consensus       397 ~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  426 (446)
                      |+++.|+.|++|+++++++.|.++|++||.
T Consensus       405 ~~~~~i~~L~~~~n~~i~~~a~~il~~~f~  434 (434)
T d1q1sc_         405 GGLDKIEALQRHENESVYKASLNLIEKYFS  434 (434)
T ss_dssp             TSHHHHHHHHTCSSHHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999995

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.7e-36  Score=282.13  Aligned_cols=368  Identities=24%  Similarity=0.314  Sum_probs=323.5

Q ss_pred             CChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhh
Q 043676            2 GSFPALVAGVWS-DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSEN   80 (446)
Q Consensus         2 ~~i~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~   80 (446)
                      |.+|.|++.+++ .++.++..|+++|.+++++. ......+...|+++.++.++.+++ ++++..|+|+|+|++..+++.
T Consensus       119 g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~-~~~~~~~~~~g~i~~l~~lL~s~~-~~i~~~a~~~L~nia~~~~~~  196 (503)
T d1wa5b_         119 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY  196 (503)
T ss_dssp             TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHhCCChHHHHHHhcCCC-hhHHHHHHHHHHHHhhhhHHH
Confidence            689999999985 56889999999999998875 556777889999999999999999 899999999999999988999


Q ss_pred             HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676           81 TNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR  160 (446)
Q Consensus        81 ~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  160 (446)
                      +..+.+.|+++.|+.++.+.++.++..++|++.+++...+.........++++.++.++ .+.+++++..++|++.+++.
T Consensus       197 r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l-~~~d~~~~~~~~~~l~~l~~  275 (503)
T d1wa5b_         197 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD  275 (503)
T ss_dssp             HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999976544344445667899999998 77889999999999999998


Q ss_pred             CCCC-CChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHH
Q 043676          161 GKPE-PPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVG  239 (446)
Q Consensus       161 ~~~~-~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~  239 (446)
                      ..+. .......++++.++.++.++++.++..++.++++++...+.....+.+.|+++.+..++.++++.++..++++++
T Consensus       276 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~  355 (503)
T d1wa5b_         276 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS  355 (503)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            7632 233455789999999999999999999999999999988888888889999999999999999999999999999


Q ss_pred             HhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC---CHHHHHHHHHcCChHHHHHHHhcCCcchH
Q 043676          240 NIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG---NREQIQAVIDAGLIRPIVNLLQNAEFDTK  316 (446)
Q Consensus       240 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~i~~L~~ll~~~~~~v~  316 (446)
                      |++.+++.....+++.++++.++..+.++ +..++.+|+|+|+|++.+   .++....+++.|+++.|+++++..++++.
T Consensus       356 nl~~~~~~~~~~i~~~~~l~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~  434 (503)
T d1wa5b_         356 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII  434 (503)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHH
T ss_pred             HHhhccHHHHHHHHHccccchhHHhcccC-ChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHH
Confidence            99999988888899999999999999999 899999999999999862   35667888899999999999999999999


Q ss_pred             HHHHHHHHHhccCC----------CHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhh
Q 043676          317 KEAAWAISNATSGG----------TQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVG  373 (446)
Q Consensus       317 ~~a~~aL~~l~~~~----------~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~  373 (446)
                      ..++.+|.++...+          .......+.+.|+++.|..+..+++.+++..|.++|.++|..+
T Consensus       435 ~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f~~~  501 (503)
T d1wa5b_         435 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEE  501 (503)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSC
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc
Confidence            99999999986432          1233445677899999999889999999999999999887543

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.2e-35  Score=271.18  Aligned_cols=365  Identities=25%  Similarity=0.389  Sum_probs=317.6

Q ss_pred             CChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhh
Q 043676            2 GSFPALVAGVWS-DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSEN   80 (446)
Q Consensus         2 ~~i~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~   80 (446)
                      |.+|.|++.|++ +++.+|..|+++|.++++.. .+....+.+.|++|.|++++.+++ ++++..|+++|++++.++++.
T Consensus        56 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~-~~~~~~i~~~~~i~~l~~~L~~~~-~~~~~~a~~~L~nl~~~~~~~  133 (434)
T d1q1sc_          56 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAF  133 (434)
T ss_dssp             TCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC-hhhhhHhhhccchhhhhhccccCC-HHHHHHHHHHHHHHhccchHH
Confidence            789999999975 56889999999999998864 456778889999999999999998 899999999999999988899


Q ss_pred             HHHHHhcCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHH
Q 043676           81 TNVVIDHGAVPIFVKLLSSPS-----DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTL  155 (446)
Q Consensus        81 ~~~~~~~~~i~~L~~~L~~~~-----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L  155 (446)
                      +..+.+.|+++.++.++..++     ......+.+++.+++...+.........++++.+..++ .+.+++++..+++++
T Consensus       134 ~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~a~~~l  212 (434)
T d1q1sc_         134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAI  212 (434)
T ss_dssp             HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHH-hccccchhhhHHhhh
Confidence            999999999999999998743     35567788999999976654444444556788888888 778899999999999


Q ss_pred             HHhhcCCC-CCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHH
Q 043676          156 SNFCRGKP-EPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPA  234 (446)
Q Consensus       156 ~~l~~~~~-~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a  234 (446)
                      .+++...+ ........++++.++.++.+++++++..++.++.+++..++.....+.+.|+++.+..++.++++.++..|
T Consensus       213 ~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a  292 (434)
T d1q1sc_         213 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA  292 (434)
T ss_dssp             HHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHH
T ss_pred             cccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHH
Confidence            99988763 22334457899999999999999999999999999999888777888999999999999999999999999


Q ss_pred             HHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCCc
Q 043676          235 LRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITA-GNREQIQAVIDAGLIRPIVNLLQNAEF  313 (446)
Q Consensus       235 ~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~  313 (446)
                      ++++.+++...+.....+.+.|+++.++.++.++ +..++..|+|+++|++. ++++....+.+.|+++.|+++++++++
T Consensus       293 ~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~  371 (434)
T d1q1sc_         293 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT  371 (434)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCH
T ss_pred             HHHHhhhccccchhHHHHhhhhhHHHHHHHHhcc-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCH
Confidence            9999999998888888888999999999999998 89999999999999987 567778889999999999999999999


Q ss_pred             chHHHHHHHHHHhccC----C-CHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHH
Q 043676          314 DTKKEAAWAISNATSG----G-TQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENIL  370 (446)
Q Consensus       314 ~v~~~a~~aL~~l~~~----~-~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~  370 (446)
                      +++..++++|.++...    + .+.....+.+.|+++.|..+.++++++++..|.++|.++|
T Consensus       372 ~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~f  433 (434)
T d1q1sc_         372 KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF  433 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            9999999999998642    2 2334556678899999999999999999999999998865

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-33  Score=268.77  Aligned_cols=400  Identities=18%  Similarity=0.185  Sum_probs=344.1

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhH
Q 043676            2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENT   81 (446)
Q Consensus         2 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~   81 (446)
                      |++|.|++.|+++++.++..|+++|.+++... ......+.+.|++|.|+.++++++ ++++..++++|.+++..+++.+
T Consensus       101 g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~  178 (529)
T d1jdha_         101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  178 (529)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHhhccc-chhhhHHHhcCCchHHHHHHHccC-hHHHHHHHHHHHHHhhhhhHHH
Confidence            67999999999999999999999999998874 455667779999999999999999 8999999999999998888899


Q ss_pred             HHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 043676           82 NVVIDHGAVPIFVKLLSS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCR  160 (446)
Q Consensus        82 ~~~~~~~~i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  160 (446)
                      ..+...|+++.++.++.. +.+.++..+++++.+++.. ++.+..+.+.|+++.++.++ .+.+..++..+++++.+++.
T Consensus       179 ~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~-~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~l~~ls~  256 (529)
T d1jdha_         179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  256 (529)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcc-ccccchhhhhhhhhhHHHHh-cccchhhhhhhhhHHHhccc
Confidence            999999999999999975 5578999999999999854 55778889999999999999 77888999999999999986


Q ss_pred             CCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC--CCccchhHHHHHH
Q 043676          161 GKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLTPALRTV  238 (446)
Q Consensus       161 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~--~~~~~~~~a~~~l  238 (446)
                      ...  ......+.++.++.++.++++.++..+++++++++..++.....+.+.++++.++..+..  +.+.++..+++++
T Consensus       257 ~~~--~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL  334 (529)
T d1jdha_         257 AAT--KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  334 (529)
T ss_dssp             TCT--TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccc--chhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHh
Confidence            642  233447899999999999999999999999999998888888888899999999998854  5567888999999


Q ss_pred             HHhhcCCch---hhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCC---
Q 043676          239 GNIVTGDDF---QTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAE---  312 (446)
Q Consensus       239 ~~l~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~---  312 (446)
                      .+++...+.   ....+...++++.++.++..+.+..++..+++++.+++.. +.....+.+.|+++.+++++.+.+   
T Consensus       335 ~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~~  413 (529)
T d1jdha_         335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDT  413 (529)
T ss_dssp             HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             hcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchh-hhhhhhhhhcccHHHHHHHHhcCCHHH
Confidence            999975543   3344557899999999998875667888999999999764 566778889999999999997543   


Q ss_pred             -------------------cchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhh
Q 043676          313 -------------------FDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVG  373 (446)
Q Consensus       313 -------------------~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~  373 (446)
                                         .++...++.++..++.  .+..+..+.+.|+++.|++++.+++++++..++++|.++....
T Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~--~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~  491 (529)
T d1jdha_         414 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK  491 (529)
T ss_dssp             C-----------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHcc--CHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCh
Confidence                               2456777888888876  5677778888999999999999999999999999999976543


Q ss_pred             hhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 043676          374 EAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTY  424 (446)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~  424 (446)
                      +.              ++.+.+.|+++.|.++++++++.+++.|..+|.++
T Consensus       492 ~~--------------~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l  528 (529)
T d1jdha_         492 EA--------------AEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             HH--------------HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             hh--------------HHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            32              57899999999999999999999999999998764

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-33  Score=264.83  Aligned_cols=403  Identities=17%  Similarity=0.163  Sum_probs=341.6

Q ss_pred             ChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhH
Q 043676            3 SFPALVAGVWS-DDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENT   81 (446)
Q Consensus         3 ~i~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~   81 (446)
                      .++.+++.|.+ +++.++..++.+|.+++..  .+....+.+.|++|.|+++|++++ ++++..|+++|++++.+++..+
T Consensus        60 ~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~Li~lL~~~~-~~v~~~a~~aL~~l~~~~~~~~  136 (529)
T d1jdha_          60 MVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGAK  136 (529)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHCCCHHHHHHHhCCCC-HHHHHHHHHHHHHhhcccchhh
Confidence            47889999974 6789999999999998764  567788999999999999999999 8999999999999998778888


Q ss_pred             HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676           82 NVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG  161 (446)
Q Consensus        82 ~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  161 (446)
                      ..+.+.|+++.|+.+|++++++++..+++++.+++..++..+..+...|+++.++.++..+....++..+++++.+++.+
T Consensus       137 ~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~  216 (529)
T d1jdha_         137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC  216 (529)
T ss_dssp             HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred             hHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcc
Confidence            88999999999999999999999999999999999888888899999999999999997667788999999999999987


Q ss_pred             CCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHh
Q 043676          162 KPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI  241 (446)
Q Consensus       162 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l  241 (446)
                      ..........++++.+..++.+.+.+++..+++++.+++......   ....|+++.|++++.+++..++..|+++++++
T Consensus       217 ~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~---~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l  293 (529)
T d1jdha_         217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNL  293 (529)
T ss_dssp             TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             ccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccch---hhhhhcchhhhhhcccccHHHHHHHHHHHHhh
Confidence            655555666899999999999999999999999999998654422   12237899999999999999999999999999


Q ss_pred             hcCCchhhHHHHhcCChHHHHHHhcc-CchHHHHHHHHHHHHHHhcCC---HHHHHHHHHcCChHHHHHHHhcCC-cchH
Q 043676          242 VTGDDFQTQCIINHGAVPYLLDMLVH-NHEEIIKKEISWIISNITAGN---REQIQAVIDAGLIRPIVNLLQNAE-FDTK  316 (446)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~v~~~a~~~l~~l~~~~---~~~~~~~~~~~~i~~L~~ll~~~~-~~v~  316 (446)
                      +..++.....+.+.++++.++..+.. ...+.++..+++++.+++...   ......+...+.++.++.++..++ ..++
T Consensus       294 ~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~  373 (529)
T d1jdha_         294 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLI  373 (529)
T ss_dssp             TTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHH
T ss_pred             ccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHH
Confidence            99888888888899999999988853 225788999999999998642   234445667899999999998764 4688


Q ss_pred             HHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCC----------------------HHHHHHHHHHHHHHHHhhh
Q 043676          317 KEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSD----------------------PEIVTVCLIGLENILKVGE  374 (446)
Q Consensus       317 ~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~----------------------~~~~~~~~~~l~~l~~~~~  374 (446)
                      ..+++++.+++..  ++....+.+.|+++.|++++.+.+                      +++...+..++..+.....
T Consensus       374 ~~~~~~l~~l~~~--~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~  451 (529)
T d1jdha_         374 KATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH  451 (529)
T ss_dssp             HHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHH
T ss_pred             HHHHHHHhhcchh--hhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCHH
Confidence            8999999999874  566778889999999999986543                      3455666667766543322


Q ss_pred             hhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 043676          375 AERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWCG  427 (446)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  427 (446)
                      .              +..+.+.|+++.|..++.+++++++..|..++.++...
T Consensus       452 ~--------------r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~  490 (529)
T d1jdha_         452 N--------------RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD  490 (529)
T ss_dssp             H--------------HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             H--------------HHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Confidence            2              57788899999999999999999999999999887643

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.4e-28  Score=224.76  Aligned_cols=368  Identities=17%  Similarity=0.183  Sum_probs=281.2

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHH
Q 043676           45 GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRD  124 (446)
Q Consensus        45 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~  124 (446)
                      ..+|.|+++|++++ ++++..|+++|++++.++++.+..+.+.|+++.|+++|++++++++..|+++|.+++..+++.+.
T Consensus         2 ~~ip~lv~~L~~~~-~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           2 LTIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CCHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CCHHHHHHHhCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            46899999999999 99999999999999988899999999999999999999999999999999999999998898999


Q ss_pred             HHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhh----------------cCCCHhH
Q 043676          125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLV----------------HSNDEDV  188 (446)
Q Consensus       125 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll----------------~~~~~~v  188 (446)
                      .+.+.|+++.++.++....++.++..+++++.+++......... ....++.+...+                ...+..+
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v  159 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEEL-IADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHH-HHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHH-HhcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence            99999999999999977788999999999999999876433332 334444443332                2347889


Q ss_pred             HHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC------CccchhHHHHHHHHhh--------------------
Q 043676          189 LTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHP------SPSVLTPALRTVGNIV--------------------  242 (446)
Q Consensus       189 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~------~~~~~~~a~~~l~~l~--------------------  242 (446)
                      +..+++++.+++...+.........|+++.++.++.+.      .......+...+.+..                    
T Consensus       160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  239 (457)
T d1xm9a1         160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhh
Confidence            99999999999987665555455567888888877531      1111111111111110                    


Q ss_pred             ------------------------------cCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCH---
Q 043676          243 ------------------------------TGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNR---  289 (446)
Q Consensus       243 ------------------------------~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~---  289 (446)
                                                    .........+...++++.++.++....++.++..+.+++.+++....   
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~  319 (457)
T d1xm9a1         240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             hhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccch
Confidence                                          00111122222334567777777665477888999999999976322   


Q ss_pred             --HHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccC------CCHHHHHH
Q 043676          290 --EQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC------SDPEIVTV  361 (446)
Q Consensus       290 --~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~~~~~  361 (446)
                        .....+.+.|+++.|++++.+++++++..+++++++++..  ++....+ ..++++.++.++..      .+++++..
T Consensus       320 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~--~~~~~~i-~~~~i~~li~~L~~~~~~~~~~~~v~~~  396 (457)
T d1xm9a1         320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PLLHRVM-GNQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--GGGHHHH-HHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhC--hhHHHHH-HHhhHHHHHHHHhccccCcCCcHHHHHH
Confidence              1223344679999999999999999999999999999874  4444444 44679999998853      34579999


Q ss_pred             HHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCCC
Q 043676          362 CLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSH-DNNEIHEKSVKIFKTYWCGRNE  430 (446)
Q Consensus       362 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~-~~~~v~~~a~~~l~~~~~~~~~  430 (446)
                      ++.+|.++....+..             ++.+.+.|+++.|..+..+ +++.+++.|..+|.+++...+-
T Consensus       397 a~~~L~~l~~~~~~~-------------~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~~  453 (457)
T d1xm9a1         397 ACYTVRNLMASQPQL-------------AKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKEL  453 (457)
T ss_dssp             HHHHHHHHHTTCTHH-------------HHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTC
T ss_pred             HHHHHHHHhcCCHHH-------------HHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHhh
Confidence            999999998655443             6788899999999999755 5788999999999999876654

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.8e-26  Score=211.46  Aligned_cols=363  Identities=15%  Similarity=0.172  Sum_probs=268.1

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhH
Q 043676            2 GSFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENT   81 (446)
Q Consensus         2 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~   81 (446)
                      ..||.|+++|+++++.+|..|+++|.+++.++ ++....+.+.|++|.|+++|++++ ++++..|+++|.+++.++++.+
T Consensus         2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~~   79 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNK   79 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCcHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence            36899999999999999999999999998765 677889999999999999999999 9999999999999998889999


Q ss_pred             HHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHh---------------ccccch
Q 043676           82 NVVIDHGAVPIFVKLLSS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAEL---------------NEHAKL  145 (446)
Q Consensus        82 ~~~~~~~~i~~L~~~L~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l---------------~~~~~~  145 (446)
                      ..+.+.|+++.++.++.+ .++.++..+++++.+++..... +...... +++.++..+               ....+.
T Consensus        80 ~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  157 (457)
T d1xm9a1          80 LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL-KEELIAD-ALPVLADRVIIPFSGWCDGNSNMSREVVDP  157 (457)
T ss_dssp             HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSST-HHHHHHH-HHHHHHHHTTHHHHTCC---------CCCH
T ss_pred             HHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhh-HHHHHhc-ccHHHHHHHHhhhhhhhcchhhhhcccccH
Confidence            999999999999998865 6789999999999999976543 3333332 334444333               133467


Q ss_pred             hHHHHHHHHHHHhhcCCCCCCh-hhhhhhHHHHHHhhcCC------CHhHHHHHHHHHHHhc---------------c--
Q 043676          146 SMLRNATRTLSNFCRGKPEPPF-DQVRPALPALAQLVHSN------DEDVLTYACWSLSYLA---------------D--  201 (446)
Q Consensus       146 ~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~~~l~~ll~~~------~~~v~~~~~~~l~~l~---------------~--  201 (446)
                      .++..+++++.+++........ ....++++.++.++++.      .......+...+....               .  
T Consensus       158 ~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  237 (457)
T d1xm9a1         158 EVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA  237 (457)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhh
Confidence            8999999999999877633222 23357788888777532      1111111111111110               0  


Q ss_pred             ---------------------------------CCcHHHHHHHHhCcHHHHHHhcCC-CCccchhHHHHHHHHhhcCCch
Q 043676          202 ---------------------------------GTNDKIQAVIEAGVCPRLVELLGH-PSPSVLTPALRTVGNIVTGDDF  247 (446)
Q Consensus       202 ---------------------------------~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~~a~~~l~~l~~~~~~  247 (446)
                                                       ........+...++++.++.++.. .++.++..+.+++.+++.....
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~  317 (457)
T d1xm9a1         238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL  317 (457)
T ss_dssp             ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred             hhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhcccc
Confidence                                             000001112223455666666654 4556777888999998865443


Q ss_pred             h-----hHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC------CcchH
Q 043676          248 Q-----TQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNA------EFDTK  316 (446)
Q Consensus       248 ~-----~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~------~~~v~  316 (446)
                      .     ...+.+.++++.++.++.++ ++.++..+++++++++.. +.....+. .++++.++.++...      +.+++
T Consensus       318 ~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~l~~La~~-~~~~~~i~-~~~i~~li~~L~~~~~~~~~~~~v~  394 (457)
T d1xm9a1         318 MSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH-PLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDIL  394 (457)
T ss_dssp             HHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS-GGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHH
T ss_pred             chHHHHHHHHHHcCChHHHHhhhcCc-cHHHHHHHHHHHHHHhhC-hhHHHHHH-HhhHHHHHHHHhccccCcCCcHHHH
Confidence            2     23344789999999999998 999999999999999764 34444444 47899999998653      24689


Q ss_pred             HHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCC-CHHHHHHHHHHHHHHHHh
Q 043676          317 KEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCS-DPEIVTVCLIGLENILKV  372 (446)
Q Consensus       317 ~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~~~~~~~~~l~~l~~~  372 (446)
                      ..++.+|.+++.. +++.++.+.+.|+++.|++++.+. ++.++..|+.+|.+++..
T Consensus       395 ~~a~~~L~~l~~~-~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~  450 (457)
T d1xm9a1         395 SSACYTVRNLMAS-QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS  450 (457)
T ss_dssp             HHHHHHHHHHHTT-CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999866 567888888899999999999765 678999999999998644

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.9e-20  Score=160.03  Aligned_cols=194  Identities=16%  Similarity=0.148  Sum_probs=175.2

Q ss_pred             hHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHH
Q 043676           60 PQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVK-LLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAE  138 (446)
Q Consensus        60 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~  138 (446)
                      .+.+..|+.+|.+++. +.+++..+...|+++.++. ++++++++++..|+++|++++.+++..+..+.+.|+++.++.+
T Consensus        31 ~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~l  109 (264)
T d1xqra1          31 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  109 (264)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            6789999999999997 7888889999999999885 7888999999999999999999999999999999999999999


Q ss_pred             hccccchhHHHHHHHHHHHhhcCCC-CCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHH
Q 043676          139 LNEHAKLSMLRNATRTLSNFCRGKP-EPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCP  217 (446)
Q Consensus       139 l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  217 (446)
                      +..+.++.++..++++|.+++.+.+ ........++++.++.+++++++.++..+++++.+++...+.....+.+.|+++
T Consensus       110 L~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~  189 (264)
T d1xqra1         110 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  189 (264)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             hhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHH
Confidence            9767788999999999999998873 344455689999999999999999999999999999988888888899999999


Q ss_pred             HHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHh
Q 043676          218 RLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIIN  254 (446)
Q Consensus       218 ~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~  254 (446)
                      .|+.++.++++.++..|+++|++|+..++........
T Consensus       190 ~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         190 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            9999999999999999999999999888777665553

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.8e-19  Score=152.60  Aligned_cols=229  Identities=16%  Similarity=0.144  Sum_probs=187.7

Q ss_pred             CCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHH-hcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHH
Q 043676          183 SNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVE-LLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYL  261 (446)
Q Consensus       183 ~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~-ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l  261 (446)
                      ..+.+.+..++.+|.+++...+ ....+...|+++.++. ++.++++.++..|+++|++++.+++.....+.+.|+++.+
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~~d-~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L  106 (264)
T d1xqra1          28 AADQQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL  106 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCHH-HHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            3467889999999999996544 5566888899998875 7888999999999999999999888888888899999999


Q ss_pred             HHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHc
Q 043676          262 LDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVRE  341 (446)
Q Consensus       262 ~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~  341 (446)
                      +.++.+..++.++..+++++++++.+++.....+.+.|+++.|+++++++++.++..++++|.+++.. +++....+.+.
T Consensus       107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~  185 (264)
T d1xqra1         107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSM  185 (264)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHT
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhc-cHHHHHHHHHh
Confidence            99997654788999999999999999999888999999999999999999999999999999999875 46777888899


Q ss_pred             CChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHh--ChHHHHH---HhhcC--CCHHHH
Q 043676          342 GCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEA--GGLEKIE---NLQSH--DNNEIH  414 (446)
Q Consensus       342 ~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~l~---~l~~~--~~~~v~  414 (446)
                      |+++.|+.++++++++++..++++|.++....+...             ..+...  +....+.   ++...  ...+..
T Consensus       186 ~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~-------------~~~~~~~l~~~~~L~~~~~~~~~~~~~~e~~  252 (264)
T d1xqra1         186 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGV-------------RECREPELGLEELLRHRCQLLQQHEEYQEEL  252 (264)
T ss_dssp             THHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHH-------------HHHHCGGGCHHHHHHHHHHHHTTCGGGHHHH
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHH-------------HHHHHhhhhHHHHHHHHHHhccchHHHHHHH
Confidence            999999999999999999999999999987655542             222221  2222222   22222  234556


Q ss_pred             HHHHHHHHHhcC
Q 043676          415 EKSVKIFKTYWC  426 (446)
Q Consensus       415 ~~a~~~l~~~~~  426 (446)
                      +.+..+++.+|.
T Consensus       253 ~~~~~ll~~~~~  264 (264)
T d1xqra1         253 EFCEKLLQTCFS  264 (264)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHhcC
Confidence            778888888874

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=5.1e-18  Score=162.56  Aligned_cols=341  Identities=11%  Similarity=0.116  Sum_probs=236.3

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hHHHH
Q 043676           46 VVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDS-PRCRD  124 (446)
Q Consensus        46 ~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~-~~~~~  124 (446)
                      ++|.+..++++++ ..+|..++.+|++++..   .........+++.+..++.++++++|..++..+..++..- .....
T Consensus       243 i~~~l~~~~~D~~-~~Vr~~~~~~l~~l~~~---~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~  318 (588)
T d1b3ua_         243 VMPTLRQAAEDKS-WRVRYMVADKFTELQKA---VGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRE  318 (588)
T ss_dssp             THHHHHHHHTCSS-HHHHHHHHHTHHHHHHH---HCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHH
T ss_pred             HHHHHHHhccccc-HHHHHHHHHhHHHHHHH---hhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhh
Confidence            4555555555555 56666666666665531   1111222345677777788888888888888887777322 11222


Q ss_pred             HHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCc
Q 043676          125 LVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTN  204 (446)
Q Consensus       125 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~  204 (446)
                      ...-...++.+...+ .+.++.++..++.++..++...  .........+|.+..++++++++++..++.++..+.....
T Consensus       319 ~~~~~~i~~~l~~~~-~d~~~~vr~~~~~~l~~~~~~~--~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~  395 (588)
T d1b3ua_         319 NVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPIL--GKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG  395 (588)
T ss_dssp             HHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHH--CHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC
T ss_pred             hhhHHHHHHHHHHhh-cCCChHHHHHHHHHHhhhhhcc--chhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcc
Confidence            222234556666666 6778888888888777765432  1122345678899999999999999999988887764332


Q ss_pred             HHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHH
Q 043676          205 DKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNI  284 (446)
Q Consensus       205 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l  284 (446)
                      ..   -....+++.+...+.+.++.+|..++.++..++.....   ..+...+.+.+..++.++ ...+|..|+++++.+
T Consensus       396 ~~---~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~D~-~~~VR~~A~~~L~~l  468 (588)
T d1b3ua_         396 IR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV---EFFDEKLNSLCMAWLVDH-VYAIREAATSNLKKL  468 (588)
T ss_dssp             HH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG---GGCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHH
T ss_pred             hh---hhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCh---HhHHHHHHHHHHhhccCC-chhHHHHHHHHHHHH
Confidence            11   12236778899999999999999999999988753211   112223556778888888 899999999999999


Q ss_pred             hcC-CHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHH
Q 043676          285 TAG-NREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCL  363 (446)
Q Consensus       285 ~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~  363 (446)
                      +.. +++    .....+++.+..++.++++..|..++.++..+......+    ......++.+.++++++.+.||..++
T Consensus       469 ~~~~~~~----~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~----~~~~~ilp~ll~~~~D~v~nVR~~a~  540 (588)
T d1b3ua_         469 VEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNVA  540 (588)
T ss_dssp             HHHHCHH----HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHH
T ss_pred             HHHhCcH----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChH----HHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            752 222    123358889999999999999999999999887532222    23345899999999999999999999


Q ss_pred             HHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 043676          364 IGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTY  424 (446)
Q Consensus       364 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~  424 (446)
                      ++|..+....+...           +     .....+.+..++++++.+|+..|.++++.+
T Consensus       541 ~~l~~i~~~~~~~~-----------~-----~~~i~~~l~~L~~D~d~dVr~~A~~al~~l  585 (588)
T d1b3ua_         541 KSLQKIGPILDNST-----------L-----QSEVKPILEKLTQDQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             HHHHHHGGGSCHHH-----------H-----HHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCcHh-----------H-----HHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            99999876543321           1     123457788999999999999999998865

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4.5e-17  Score=155.95  Aligned_cols=380  Identities=10%  Similarity=0.069  Sum_probs=279.8

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV   83 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   83 (446)
                      ++.+.+.++++++.+|..++..+..++..-  .  .......++|.+..++++++ +.+|..|+.++..++...+..   
T Consensus       166 ~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~--~--~~~~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~i~~~~~~~---  237 (588)
T d1b3ua_         166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVL--E--LDNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE---  237 (588)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHHHHHHHHHTS--C--HHHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH---
T ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHHHHHh--c--HHHHHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHhhccCCHH---
Confidence            456667778899999999999999988753  1  12334567888888888888 899999999999887522211   


Q ss_pred             HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 043676           84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKP  163 (446)
Q Consensus        84 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  163 (446)
                      .....+++.+..++.++++.+|..++.++++++...+   ........++.+..++ .+.+.+++..++..+..++..-.
T Consensus       238 ~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ll-~d~~~~vr~~a~~~l~~~~~~l~  313 (588)
T d1b3ua_         238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENLS  313 (588)
T ss_dssp             HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh---hhhhhhhhhHHHHHHH-hccchHHHHHHHHHHHHHHHHHh
Confidence            1122367888999999999999999999999873221   1222344677788888 77889999999999999988753


Q ss_pred             CCC--hhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHh
Q 043676          164 EPP--FDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNI  241 (446)
Q Consensus       164 ~~~--~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l  241 (446)
                      ...  ......++|.+...+.+.++.++..+..++..++..-...   .....+++.+...+.++++.++..++..+..+
T Consensus       314 ~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~---~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~  390 (588)
T d1b3ua_         314 ADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNLDCV  390 (588)
T ss_dssp             TTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHH
T ss_pred             hhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchh---HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence            222  2234678889999999999999999988888776432211   12235788999999999999999988887777


Q ss_pred             hcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCCcchHHHHH
Q 043676          242 VTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG-NREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAA  320 (446)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~  320 (446)
                      ......   .-+...+++.+...+.+. ++.+|..++..+..++.. +.+.    ....+.+.+..++.++...+|..|+
T Consensus       391 ~~~~~~---~~~~~~ll~~l~~~~~d~-~~~~r~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~D~~~~VR~~A~  462 (588)
T d1b3ua_         391 NEVIGI---RQLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVEF----FDEKLNSLCMAWLVDHVYAIREAAT  462 (588)
T ss_dssp             HHHSCH---HHHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGGG----CCHHHHHHHHHGGGCSSHHHHHHHH
T ss_pred             Hhhcch---hhhhhHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHcChHh----HHHHHHHHHHhhccCCchhHHHHHH
Confidence            643221   111234678888889888 999999999999988641 1111    1123566677888888999999999


Q ss_pred             HHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHH
Q 043676          321 WAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLE  400 (446)
Q Consensus       321 ~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  400 (446)
                      .+++.++....++.    .....++.+.+++.++++..|..++.++..+....+..                ......++
T Consensus       463 ~~L~~l~~~~~~~~----~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~----------------~~~~~ilp  522 (588)
T d1b3ua_         463 SNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----------------ITTKHMLP  522 (588)
T ss_dssp             HHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----------------HHHHHTHH
T ss_pred             HHHHHHHHHhCcHH----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChH----------------HHHHHHHH
Confidence            99999976544332    22347889999999999999999999999887654432                12234577


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhcC
Q 043676          401 KIENLQSHDNNEIHEKSVKIFKTYWC  426 (446)
Q Consensus       401 ~l~~l~~~~~~~v~~~a~~~l~~~~~  426 (446)
                      .+..+..++.++|+..+.+++..+..
T Consensus       523 ~ll~~~~D~v~nVR~~a~~~l~~i~~  548 (588)
T d1b3ua_         523 TVLRMAGDPVANVRFNVAKSLQKIGP  548 (588)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            88888999999999998888887754

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.1e-13  Score=138.61  Aligned_cols=361  Identities=11%  Similarity=0.112  Sum_probs=221.7

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCCh-hhHH
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTS-ENTN   82 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~-~~~~   82 (446)
                      +|.+.+.+.++++..|..|+.++..++.+. .+...... ..+++.++..+.+++ +.+|..++|+|+.++.... ....
T Consensus       397 l~~l~~~l~s~~~~~reaa~~alg~i~eg~-~~~~~~~l-~~li~~l~~~l~d~~-~~Vr~~a~~~l~~~~~~~~~~~~~  473 (888)
T d1qbkb_         397 LPLLKELLFHHEWVVKESGILVLGAIAEGC-MQGMIPYL-PELIPHLIQCLSDKK-ALVRSITCWTLSRYAHWVVSQPPD  473 (888)
T ss_dssp             HHHHHHTTTSSSHHHHHHHHHHHHHHTTTS-HHHHTTTH-HHHHHHHHHHTTSSC-HHHHHHHHHHHHHTHHHHHSSCHH
T ss_pred             HHHHHHhhccchhHHHHHHHHHhhhhhhhH-HHHhcccc-hhhhHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhhh
Confidence            355556778899999999999999877642 11111111 246788889999888 9999999999999875111 1111


Q ss_pred             HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-HHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676           83 VVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSP-RCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG  161 (446)
Q Consensus        83 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  161 (446)
                      . .-...++.++..+.++++.++..|+++|.+++.... .....+  ...++.++..+ ...+...+..+..++..++..
T Consensus       474 ~-~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~--~~il~~l~~~l-~~~~~~~~~~~~~al~~l~~~  549 (888)
T d1qbkb_         474 T-YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAF-SKYQHKNLLILYDAIGTLADS  549 (888)
T ss_dssp             H-HTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH--HHHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHH
T ss_pred             h-hhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHh
Confidence            2 224578889999999999999999999999983211 111111  11345566666 344455555566666665543


Q ss_pred             C--CCCChhhhhhhHHHHHHhhcC--CCHhHHHHHHHHHHHhccCCc----HHHHHHHHhCcHHHHH--------HhcC-
Q 043676          162 K--PEPPFDQVRPALPALAQLVHS--NDEDVLTYACWSLSYLADGTN----DKIQAVIEAGVCPRLV--------ELLG-  224 (446)
Q Consensus       162 ~--~~~~~~~~~~~~~~l~~ll~~--~~~~v~~~~~~~l~~l~~~~~----~~~~~~~~~~~~~~l~--------~ll~-  224 (446)
                      .  ..........+++.+......  .+......++.++..++....    .....+.+ ..+..+.        .... 
T Consensus       550 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~  628 (888)
T d1qbkb_         550 VGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ-RCVNLVQKTLAQAMLNNAQP  628 (888)
T ss_dssp             HGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHCT
T ss_pred             hhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHhccc
Confidence            2  111222334555555555442  223333445555555542211    11111111 1111111        1111 


Q ss_pred             ----CCCccchhHHHHHHHHhhcCCchhhHHHH-hcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 043676          225 ----HPSPSVLTPALRTVGNIVTGDDFQTQCII-NHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAG  299 (446)
Q Consensus       225 ----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~  299 (446)
                          ..+......++.+++.++.........++ ...+++.+...+++. ++.+|..|..+++.++..........++ .
T Consensus       629 ~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~-~~~vr~~a~~llgdl~~~~~~~~~~~l~-~  706 (888)
T d1qbkb_         629 DQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK-MPEVRQSSFALLGDLTKACFQHVKPCIA-D  706 (888)
T ss_dssp             TTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCGGGTGGGHH-H
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHhhhHHHHHHHH-H
Confidence                13445566677777777654433343444 456788888899888 8999999999999987644333333332 3


Q ss_pred             ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCC--HHHHHHHHHHHHHHHHhhhhh
Q 043676          300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSD--PEIVTVCLIGLENILKVGEAE  376 (446)
Q Consensus       300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~--~~~~~~~~~~l~~l~~~~~~~  376 (446)
                      +++.+...++++.+.++..|+++++.++.....+...++-  .+++.|+..+++++  ..+..+++.+|.++....+..
T Consensus       707 ~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~--~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~  783 (888)
T d1qbkb_         707 FMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIP--MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQE  783 (888)
T ss_dssp             HHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSH--HHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHH
Confidence            6677777777778899999999999998765443333322  26778888887643  568899999999998766554

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.4e-12  Score=134.83  Aligned_cols=407  Identities=11%  Similarity=0.093  Sum_probs=261.5

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV   83 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   83 (446)
                      +..|++.+++.|++.|+.|+.-|.+....+.... +.-....+++.|+++|.+++ ++||..|+.+|+.++...++... 
T Consensus         5 ~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~-~~~~~~~i~~~ll~~L~D~~-~~Vq~~A~k~l~~l~~~~~~~~~-   81 (1207)
T d1u6gc_           5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKL-DDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEYQV-   81 (1207)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSC-CTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHHHH-
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHHHHhhccccc-ChHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCcHhhH-
Confidence            5678899999999999999999988776432111 11112247899999999998 99999999999999874443221 


Q ss_pred             HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChH------HHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHH
Q 043676           84 VIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPR------CRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSN  157 (446)
Q Consensus        84 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~------~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  157 (446)
                         ..+++.|+..+.+++...+..+..+|..+...-+.      ....+ ....++.+...+....+..++..++.++..
T Consensus        82 ---~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~v~~~al~~l~~  157 (1207)
T d1u6gc_          82 ---ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMAD  157 (1207)
T ss_dssp             ---HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence               13478888888888888888888888776532211      01111 111344555555555677889999999998


Q ss_pred             hhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC-CCCccchhHHHH
Q 043676          158 FCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLTPALR  236 (446)
Q Consensus       158 l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~~~~~a~~  236 (446)
                      +....+..-......+++.+...+.++++.+|..++.+++.++...+...   . ..+++.++..+. +.+...+..++.
T Consensus       158 l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~---~-~~~~~~ll~~l~~~~~~~~~~~~~~  233 (1207)
T d1u6gc_         158 MLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV---F-VDLIEHLLSELSKNDSMSTTRTYIQ  233 (1207)
T ss_dssp             HHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred             HHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHH---H-HHHHHHHHHHHccCCCHHHHHHHHH
Confidence            88766444444456788889999999999999999999999987644321   1 144555555443 456677888889


Q ss_pred             HHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHH----HHHHHHH--cC-----------
Q 043676          237 TVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNRE----QIQAVID--AG-----------  299 (446)
Q Consensus       237 ~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~----~~~~~~~--~~-----------  299 (446)
                      +++.++...+...... -..+++.+...+.+. +.++|..++.++..++...+.    ....++.  ..           
T Consensus       234 ~l~~l~~~~~~~~~~~-l~~i~~~l~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~  311 (1207)
T d1u6gc_         234 CIAAISRQAGHRIGEY-LEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYD  311 (1207)
T ss_dssp             HHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------
T ss_pred             HHHHHHHHcchhhHHH-HHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhh
Confidence            9998887554432211 135788888999888 889999999998888753221    1111111  00           


Q ss_pred             -------------------ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHH
Q 043676          300 -------------------LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVT  360 (446)
Q Consensus       300 -------------------~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~  360 (446)
                                         ..+.......+..+.+|..++.+|..+..... +....+. ..+++.+...+.+.++.++.
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~-~~l~~~~-~~~~~~L~~~l~d~~~~vr~  389 (1207)
T d1u6gc_         312 DEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH-EMLPEFY-KTVSPALISRFKEREENVKA  389 (1207)
T ss_dssp             ------------------------------CTTHHHHHHHHHHHHHHTTCC-TTHHHHH-TTTHHHHHSTTSCSSSHHHH
T ss_pred             hHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHH-HHHHHHH-HHHHHHHHHHhcCCchHHHH
Confidence                               00111111223456789999999999987533 3333322 35889999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhcccCC---CCccchHHHHHHH--hChHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 043676          361 VCLIGLENILKVGEAERNMGTT---IGDVNQYAQFVEE--AGGLEKIENLQSHDNNEIHEKSVKIFKTYW  425 (446)
Q Consensus       361 ~~~~~l~~l~~~~~~~~~~~~~---~~~~~~~~~~l~~--~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  425 (446)
                      .+..++..++............   ....+.....+.+  ...++.+.....+.+..++..+..++..+.
T Consensus       390 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~  459 (1207)
T d1u6gc_         390 DVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELV  459 (1207)
T ss_dssp             HHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence            9999998887654322110000   0000001111111  123455666777888888888877777664

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.3e-12  Score=128.82  Aligned_cols=381  Identities=13%  Similarity=0.103  Sum_probs=234.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHh
Q 043676           17 SLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKL   96 (446)
Q Consensus        17 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~   96 (446)
                      .++..+..+|..++...+.+...     -+++.+.+.+.+++ ...|+.|+.+++.++.+..+.....+ ..+++.++..
T Consensus       372 ~~r~~a~~~L~~l~~~~~~~il~-----~~l~~l~~~l~s~~-~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~  444 (888)
T d1qbkb_         372 NLRKCSAAALDVLANVYRDELLP-----HILPLLKELLFHHE-WVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQC  444 (888)
T ss_dssp             SSHHHHHHHSTTTTTTCCSSSHH-----HHHHHHHHTTTSSS-HHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHH
T ss_pred             hHHHHHHHHHhhHhhhhHHHHHH-----HHHHHHHHhhccch-hHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHh
Confidence            45666776766655443222111     23566667778888 79999999999999875443322222 2357888899


Q ss_pred             hCCCCHHHHHHHHHHHHHhhCCChH-HHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHH
Q 043676           97 LSSPSDDVREQAVWALGNVAGDSPR-CRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALP  175 (446)
Q Consensus        97 L~~~~~~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~  175 (446)
                      ++++++.+|..++|+++.++..... ..+. .-...++.++..+ .+.++.++..++++|.+++.............+++
T Consensus       445 l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~-~~~~~l~~ll~~l-~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~  522 (888)
T d1qbkb_         445 LSDKKALVRSITCWTLSRYAHWVVSQPPDT-YLKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTELVPYLAYILD  522 (888)
T ss_dssp             TTSSCHHHHHHHHHHHHHTHHHHHSSCHHH-HTTTHHHHHHHHH-SSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            9999999999999999998742111 1111 1234567777777 67789999999999999987764444455678888


Q ss_pred             HHHHhhcCCCHhHHHHHHHHHHHhccCCcHH--HHHHHHhCcHHHHHHhcCC--CCccchhHHHHHHHHhhcCCchhhHH
Q 043676          176 ALAQLVHSNDEDVLTYACWSLSYLADGTNDK--IQAVIEAGVCPRLVELLGH--PSPSVLTPALRTVGNIVTGDDFQTQC  251 (446)
Q Consensus       176 ~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~--~~~~~~~~~~~~l~~ll~~--~~~~~~~~a~~~l~~l~~~~~~~~~~  251 (446)
                      .+...+...+...+..+..+++.++......  ...+.+ .+++.+......  .+.......+.+++.++.........
T Consensus       523 ~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~  601 (888)
T d1qbkb_         523 TLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQ-MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLP  601 (888)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHH-HHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhh
Confidence            8888888887777777777777665321110  011111 344555554443  23334455666776665432221111


Q ss_pred             HHhcCChHHHHHHh------------c----cCchHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCChHHHHHHHhcCCcc
Q 043676          252 IINHGAVPYLLDML------------V----HNHEEIIKKEISWIISNITAGN-REQIQAVIDAGLIRPIVNLLQNAEFD  314 (446)
Q Consensus       252 ~~~~~~~~~l~~~l------------~----~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~  314 (446)
                      ... ..++.++.++            .    ...+..+...+..+++.++..- ......+....+++.+...+++.++.
T Consensus       602 ~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~  680 (888)
T d1qbkb_         602 YCE-PVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPE  680 (888)
T ss_dssp             HHH-HHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHH
T ss_pred             hHH-HHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChH
Confidence            110 0111111111            1    1114456666677777776421 12222233456788888999999999


Q ss_pred             hHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHH
Q 043676          315 TKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVE  394 (446)
Q Consensus       315 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~  394 (446)
                      ++..|..+++.++....+....++-.  +++.+...+++..++++..+++++..+.......-         .+|...+ 
T Consensus       681 vr~~a~~llgdl~~~~~~~~~~~l~~--~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~---------~py~~~i-  748 (888)
T d1qbkb_         681 VRQSSFALLGDLTKACFQHVKPCIAD--FMPILGTNLNPEFISVCNNATWAIGEISIQMGIEM---------QPYIPMV-  748 (888)
T ss_dssp             HHHHHHHHHHHHHHHCGGGTGGGHHH--HHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGG---------GGGSHHH-
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHh---------hhhHHHH-
Confidence            99999999998876543333333222  57778888888899999999999999887655432         2233332 


Q ss_pred             HhChHHHHHHhhcCC--CHHHHHHHHHHHHHh
Q 043676          395 EAGGLEKIENLQSHD--NNEIHEKSVKIFKTY  424 (446)
Q Consensus       395 ~~~~~~~l~~l~~~~--~~~v~~~a~~~l~~~  424 (446)
                          ++.|..+.+++  +..+.+.+...+.++
T Consensus       749 ----l~~L~~il~~~~~~~~v~~n~~~~lgrl  776 (888)
T d1qbkb_         749 ----LHQLVEIINRPNTPKTLLENTAITIGRL  776 (888)
T ss_dssp             ----HHHHHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHcCCCccHHHHHHHHHHHHHH
Confidence                44555555543  345666666666654

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=6.9e-12  Score=106.98  Aligned_cols=256  Identities=15%  Similarity=0.120  Sum_probs=194.8

Q ss_pred             cCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHH
Q 043676           44 SGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCR  123 (446)
Q Consensus        44 ~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~  123 (446)
                      ....+.|+++|++++ +.+|..|+.+|+.+..  +         ..++.++.+++++++.+|..|+.+|+.+...... .
T Consensus        18 ~~~~~~L~~~L~d~~-~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-~   84 (276)
T d1oyza_          18 KLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-E   84 (276)
T ss_dssp             TSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-H
T ss_pred             cCCHHHHHHHhcCCC-HHHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-c
Confidence            345778999999999 9999999999998864  2         3479999999999999999999999998744332 1


Q ss_pred             HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCC
Q 043676          124 DLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGT  203 (446)
Q Consensus       124 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~  203 (446)
                      ..     .++.+...+.+++++.++..++.+|..++...+    ......++.+...+.+.++.++..++.+++.+..  
T Consensus        85 ~~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~--  153 (276)
T d1oyza_          85 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--  153 (276)
T ss_dssp             HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred             cc-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccc----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch--
Confidence            11     234555655578899999999999999886542    2334677888888888899999999888876432  


Q ss_pred             cHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHH
Q 043676          204 NDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISN  283 (446)
Q Consensus       204 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~  283 (446)
                               ...++.+..++...+..++..+...+.........         ..+.+...+.+. +..++..+.++++.
T Consensus       154 ---------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~al~~  214 (276)
T d1oyza_         154 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDK-NEEVRIEAIIGLSY  214 (276)
T ss_dssp             ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCS-CHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhh-hhhhhhhhccccch
Confidence                     25667788888888888888888888777664432         234567777777 88899999999887


Q ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccC-CCHHHHHHH
Q 043676          284 ITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC-SDPEIVTVC  362 (446)
Q Consensus       284 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~~~  362 (446)
                      +..           ...++.|++.+.  ++.++..++++|+.+..            .+.++.|..++.+ ++.+++..|
T Consensus       215 ~~~-----------~~~~~~L~~~l~--d~~vr~~a~~aL~~ig~------------~~~~~~L~~~l~~~~d~~vr~~A  269 (276)
T d1oyza_         215 RKD-----------KRVLSVLCDELK--KNTVYDDIIEAAGELGD------------KTLLPVLDTMLYKFDDNEIITSA  269 (276)
T ss_dssp             TTC-----------GGGHHHHHHHHT--SSSCCHHHHHHHHHHCC------------GGGHHHHHHHHTTSSCCHHHHHH
T ss_pred             hhh-----------hhhHHHHHHHhC--ChHHHHHHHHHHHHcCC------------HHHHHHHHHHHccCCCHHHHHHH
Confidence            632           246788888886  45689999999998853            1357778887765 578899999


Q ss_pred             HHHHH
Q 043676          363 LIGLE  367 (446)
Q Consensus       363 ~~~l~  367 (446)
                      ++.|.
T Consensus       270 ~~~L~  274 (276)
T d1oyza_         270 IDKLK  274 (276)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            88875

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=9.4e-11  Score=99.75  Aligned_cols=252  Identities=15%  Similarity=0.124  Sum_probs=187.1

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV   83 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   83 (446)
                      .+.|++.|+++|+.+|..|+..|..+..            ...++.|++++++++ +.++..|+.+|+.+...... ...
T Consensus        21 ~~~L~~~L~d~~~~vR~~A~~~L~~~~~------------~~~~~~l~~~l~d~~-~~vr~~a~~aL~~l~~~~~~-~~~   86 (276)
T d1oyza_          21 DDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKKC-EDN   86 (276)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTTT-HHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhhCC------------HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhcccccc-ccc
Confidence            4678999999999999999999987522            135899999999999 89999999999999762222 111


Q ss_pred             HHhcCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 043676           84 VIDHGAVPIFV-KLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGK  162 (446)
Q Consensus        84 ~~~~~~i~~L~-~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  162 (446)
                      .     ++.+. .+++++++.++..++.+|++++...+.....     .++.+...+ .+.++.++..++.++.....  
T Consensus        87 ~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~-----~~~~l~~~~-~d~~~~vr~~a~~~l~~~~~--  153 (276)
T d1oyza_          87 V-----FNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPK-----IVEQSQITA-FDKSTNVRRATAFAISVIND--  153 (276)
T ss_dssp             H-----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHHT-TCSCHHHHHHHHHHHHTC----
T ss_pred             h-----HHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhHH-----HHHHHHHHh-cCcchHHHHHHHHHHhhcch--
Confidence            1     23333 4567899999999999999998554433222     345566666 67788899888888876543  


Q ss_pred             CCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhh
Q 043676          163 PEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIV  242 (446)
Q Consensus       163 ~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~  242 (446)
                              ...++.+..++...+..++..+..++.........         ..+.+...+.+.+..++..+..+++.+.
T Consensus       154 --------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~al~~~~  216 (276)
T d1oyza_         154 --------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGLSYRK  216 (276)
T ss_dssp             ---------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred             --------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhhhhhhhhhhccccchhh
Confidence                    23467888888888999999988888877665442         3345677788888889999888887654


Q ss_pred             cCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-CCcchHHHHHH
Q 043676          243 TGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQN-AEFDTKKEAAW  321 (446)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~  321 (446)
                      .           ...++.++..+.++   .+|..++++|+.+.  ++         +.++.|..++.. ++.+++..|+.
T Consensus       217 ~-----------~~~~~~L~~~l~d~---~vr~~a~~aL~~ig--~~---------~~~~~L~~~l~~~~d~~vr~~A~~  271 (276)
T d1oyza_         217 D-----------KRVLSVLCDELKKN---TVYDDIIEAAGELG--DK---------TLLPVLDTMLYKFDDNEIITSAID  271 (276)
T ss_dssp             C-----------GGGHHHHHHHHTSS---SCCHHHHHHHHHHC--CG---------GGHHHHHHHHTTSSCCHHHHHHHH
T ss_pred             h-----------hhhHHHHHHHhCCh---HHHHHHHHHHHHcC--CH---------HHHHHHHHHHccCCCHHHHHHHHH
Confidence            2           23577888888765   58899999999883  22         478888888876 47789999988


Q ss_pred             HHH
Q 043676          322 AIS  324 (446)
Q Consensus       322 aL~  324 (446)
                      +|.
T Consensus       272 ~L~  274 (276)
T d1oyza_         272 KLK  274 (276)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            874

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=7.6e-11  Score=108.03  Aligned_cols=390  Identities=11%  Similarity=0.065  Sum_probs=246.2

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCC-ChHHHHHHHHHHHHHcCCChhhH-H
Q 043676            5 PALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRED-YPQLQYEAAWVLINIASGTSENT-N   82 (446)
Q Consensus         5 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~-~   82 (446)
                      -.+++.+-|+|.+.+.+|-..|..+...+  .       .+.+..|...+.+++ ...+|..|+..|.+......... .
T Consensus         3 ~~il~~~~s~d~~~r~~A~~~L~~~~~~~--~-------~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~   73 (458)
T d1ibrb_           3 ITILEKTVSPDRLELEAAQKFLERAAVEN--L-------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA   73 (458)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHHHHhcC--c-------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhh
Confidence            35667777999999999999999876632  1       135777777776543 36789999988888776332211 1


Q ss_pred             HH----------HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcc-ccchhHHHHH
Q 043676           83 VV----------IDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE-HAKLSMLRNA  151 (446)
Q Consensus        83 ~~----------~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~~a  151 (446)
                      ..          ....+.+.+++.+.++++..+ .++.++..++......   -.-.+.++.++..+.. ..+...+..+
T Consensus        74 ~~~~~~~~l~~~~~~~i~~~ll~~~~~~~~~~~-~~~~~~~~i~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~  149 (458)
T d1ibrb_          74 QYQQRWLAIDANARREVKNYVLQTLGTETYRPS-SASQCVAGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMKEST  149 (458)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSSC-SHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred             HHhhhhccCCHHHHHHHHHHHHhccCCCcHHHH-HHHHHHHHHHHHhCCc---ccCcchhHHHHHHHHhhcchHHHHHHH
Confidence            11          112334556677766554333 3444444444110000   0011346677776632 2355677888


Q ss_pred             HHHHHHhhcCC-CCCChhhhhhhHHHHHHhhcCC--CHhHHHHHHHHHHHhccCCcHHHH-HHHHhCcHHHHHHhcCCCC
Q 043676          152 TRTLSNFCRGK-PEPPFDQVRPALPALAQLVHSN--DEDVLTYACWSLSYLADGTNDKIQ-AVIEAGVCPRLVELLGHPS  227 (446)
Q Consensus       152 ~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~--~~~v~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~l~~ll~~~~  227 (446)
                      +.++..++... +.........+++.+...+.++  +..++..++.++..+......... ......+.+.+...+.+++
T Consensus       150 l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  229 (458)
T d1ibrb_         150 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD  229 (458)
T ss_dssp             HHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCC
Confidence            99998887664 3333344567788888888754  578999999999998866443221 1223356677888888899


Q ss_pred             ccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHH------------
Q 043676          228 PSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAV------------  295 (446)
Q Consensus       228 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~------------  295 (446)
                      ++++..++.++..++...+......+.......+.....+. +..++..++..+..++..........            
T Consensus       230 ~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~  308 (458)
T d1ibrb_         230 TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEH  308 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSC
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHH
Confidence            99999999999999876654433333333334455556666 78899999988888864211111000            


Q ss_pred             --------HHcCChHHHHHHHhc-------CCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHH
Q 043676          296 --------IDAGLIRPIVNLLQN-------AEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVT  360 (446)
Q Consensus       296 --------~~~~~i~~L~~ll~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~  360 (446)
                              ....+.+.+...+..       .+..++..+..++..++.....+....     +++.+.+.++++++.++.
T Consensus       309 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-----l~~~i~~~l~s~~~~~r~  383 (458)
T d1ibrb_         309 TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPH-----VLPFIKEHIKNPDWRYRD  383 (458)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHH-----HHHHHHHHTTCSSHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhH-----HHHHHHHHhcCCCHHHHH
Confidence                    001233444444432       234688889999888876544333333     466788888999999999


Q ss_pred             HHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 043676          361 VCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYWC  426 (446)
Q Consensus       361 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  426 (446)
                      .++.+|..+........        ..++   +  ...++.+....+++++.|+..|.+++.++.+
T Consensus       384 aal~~l~~i~~~~~~~~--------~~~~---l--~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         384 AAVMAFGCILEGPEPSQ--------LKPL---V--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE  436 (458)
T ss_dssp             HHHHHHHHTSSSSCTTT--------TCTT---T--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHhH--------HHHH---H--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            99999988765332211        0111   1  2346677788899999999999999998753

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.1e-10  Score=118.33  Aligned_cols=393  Identities=12%  Similarity=0.130  Sum_probs=239.0

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCC------------------------
Q 043676            3 SFPALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRED------------------------   58 (446)
Q Consensus         3 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~------------------------   58 (446)
                      .++.+++.|.+.++.+|..|+++|..+...-+.+...     .+++.|+..+.+++                        
T Consensus        46 i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~~-----~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~  120 (1207)
T d1u6gc_          46 VVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVE-----TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG  120 (1207)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHH-----HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhHH-----HHHHHHHHHhcCCchhhhHHHHHHHHHHHHhccccccc
Confidence            3677888899999999999999998876653111111     12333333332222                        


Q ss_pred             -----------------------ChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 043676           59 -----------------------YPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNV  115 (446)
Q Consensus        59 -----------------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l  115 (446)
                                             ...++..++.++..+....+...... ...+++.++..+.++++.+|..|+.+++.+
T Consensus       121 ~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~-~~~il~~l~~~l~~~~~~vR~~A~~~l~~l  199 (1207)
T d1u6gc_         121 SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF-HPSILTCLLPQLTSPRLAVRKRTIIALGHL  199 (1207)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence                                   24455555555555543111100000 012456777788889999999999999999


Q ss_pred             hCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHH
Q 043676          116 AGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWS  195 (446)
Q Consensus       116 ~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~  195 (446)
                      +...+..   . -...+..++..+..+.+...++.++.++..++...+..-......++|.+...+..+++++++.++.+
T Consensus       200 ~~~~~~~---~-~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~  275 (1207)
T d1u6gc_         200 VMSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQA  275 (1207)
T ss_dssp             TTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHH
T ss_pred             HHHCCHH---H-HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence            8654321   1 12346677777756666777788888998888765444334457889999999999999999999999


Q ss_pred             HHHhccCCcHHHHHHHHhCcHHHHHHhc-------------------------------------CCCCccchhHHHHHH
Q 043676          196 LSYLADGTNDKIQAVIEAGVCPRLVELL-------------------------------------GHPSPSVLTPALRTV  238 (446)
Q Consensus       196 l~~l~~~~~~~~~~~~~~~~~~~l~~ll-------------------------------------~~~~~~~~~~a~~~l  238 (446)
                      +..++...+........ .+++.+...+                                     .+..+.+|..++.++
T Consensus       276 l~~l~~~~~~~~~~~~~-~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L  354 (1207)
T d1u6gc_         276 FESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCL  354 (1207)
T ss_dssp             HHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHH
T ss_pred             HHHHHHhChhhhhhhHH-HHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHH
Confidence            98887654432221111 1222222211                                     223467899999999


Q ss_pred             HHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC---CHH-------------HHHHHHH--cCC
Q 043676          239 GNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG---NRE-------------QIQAVID--AGL  300 (446)
Q Consensus       239 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~---~~~-------------~~~~~~~--~~~  300 (446)
                      ..+....++...... ..+++.++..+.+. ++.+|..+..++..+...   ...             ....+.+  ..+
T Consensus       355 ~~l~~~~~~~l~~~~-~~~~~~L~~~l~d~-~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i  432 (1207)
T d1u6gc_         355 DAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNI  432 (1207)
T ss_dssp             HHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHH
T ss_pred             HhHHHHHHHHHHHHH-HHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHH
Confidence            999887766554443 45889999999888 889999999888877531   000             0011111  235


Q ss_pred             hHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCC--CHHHHHHHHHHHHHHHHhhhhhhc
Q 043676          301 IRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCS--DPEIVTVCLIGLENILKVGEAERN  378 (446)
Q Consensus       301 i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~~~  378 (446)
                      ++.+.+.+.+.++.++..+..++..+..........++..  .++.+...+.+.  ...++..++.++..++....... 
T Consensus       433 ~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~--~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~-  509 (1207)
T d1u6gc_         433 VKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPV--LVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQV-  509 (1207)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHH--HHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGG-
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhHh--hHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHH-
Confidence            6677777788889999999999988865322111112111  355566666543  45677888888888876544322 


Q ss_pred             ccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHH
Q 043676          379 MGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKT  423 (446)
Q Consensus       379 ~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~  423 (446)
                                +...+  ....+.+.....++...+...|...+..
T Consensus       510 ----------~~~~~--~~l~~~~~~~~~~~~~~i~~~al~~~~~  542 (1207)
T d1u6gc_         510 ----------FHPHV--QALVPPVVACVGDPFYKITSEALLVTQQ  542 (1207)
T ss_dssp             ----------GHHHH--TTTHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             ----------HHHHH--HhhhhhHHHHHccccHHHHHHHHHHHHH
Confidence                      11111  2223444455556666665555544443

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.7e-11  Score=111.15  Aligned_cols=360  Identities=13%  Similarity=0.084  Sum_probs=221.8

Q ss_pred             hHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHH-----------HHhcCCHHHHHHhhcCCCChHHHHHHHHHH
Q 043676            4 FPALVAGVWSD--DNSLQLEATTLSRKLLSFDRNPPIEK-----------VIQSGVVPRFVEFLMREDYPQLQYEAAWVL   70 (446)
Q Consensus         4 i~~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~-----------~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L   70 (446)
                      ++.|.+.+.++  +..+|..|+..|.+..... .+....           -....+.+.+++.+.+++ +. +..++.++
T Consensus        36 ~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~-~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~-~~-~~~~~~~~  112 (458)
T d1ibrb_          36 LVELSRVLANPGNSQVARVAAGLQIKNSLTSK-DPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YR-PSSASQCV  112 (458)
T ss_dssp             HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SS-SCSHHHHH
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcc-CchhhhHHhhhhccCCHHHHHHHHHHHHhccCCCc-HH-HHHHHHHH
Confidence            34556666543  4788999998998877653 211111           112245556677777665 33 33445555


Q ss_pred             HHHcCCC-hhhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcc-ccchh
Q 043676           71 INIASGT-SENTNVVIDHGAVPIFVKLLSS--PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE-HAKLS  146 (446)
Q Consensus        71 ~~l~~~~-~~~~~~~~~~~~i~~L~~~L~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~~  146 (446)
                      ..++... +..    .-.+.++.+...+.+  .++..+..++.++..++.........-.....++.++..+.. +.+..
T Consensus       113 ~~i~~~~~~~~----~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~  188 (458)
T d1ibrb_         113 AGIACAEIPVN----QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNN  188 (458)
T ss_dssp             HHHHHHHGGGT----CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHH
T ss_pred             HHHHHHhCCcc----cCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHH
Confidence            5554310 100    012567778877765  557788889999988874322110000011135666666643 34678


Q ss_pred             HHHHHHHHHHHhhcCCC--CCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC
Q 043676          147 MLRNATRTLSNFCRGKP--EPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLG  224 (446)
Q Consensus       147 ~~~~a~~~L~~l~~~~~--~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~  224 (446)
                      ++..++.++..+.....  ...........+.+...+.+++++++..++.++..++...+......+.....+.+.....
T Consensus       189 v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~  268 (458)
T d1ibrb_         189 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK  268 (458)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999886641  1222333556777888888999999999999999998665543322222233445556667


Q ss_pred             CCCccchhHHHHHHHHhhcCCchhh--------------------HHHHhcCChHHHHHHhccC------chHHHHHHHH
Q 043676          225 HPSPSVLTPALRTVGNIVTGDDFQT--------------------QCIINHGAVPYLLDMLVHN------HEEIIKKEIS  278 (446)
Q Consensus       225 ~~~~~~~~~a~~~l~~l~~~~~~~~--------------------~~~~~~~~~~~l~~~l~~~------~~~~v~~~a~  278 (446)
                      +.++.++..++..+..++.......                    .......+.+.+...+.+.      .+..++..+.
T Consensus       269 ~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~  348 (458)
T d1ibrb_         269 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAG  348 (458)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHH
Confidence            7788888888888887764211110                    0011112334444444321      1345788888


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHH
Q 043676          279 WIISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEI  358 (446)
Q Consensus       279 ~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~  358 (446)
                      .++..++...++..   .. .+++.+.+.++++++.+|..|+.+|+.++....++....+ -..+++.+...++++++.|
T Consensus       349 ~~l~~l~~~~~~~~---~~-~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~-l~~i~~~l~~~l~d~~~~V  423 (458)
T d1ibrb_         349 VCLMLLATCCEDDI---VP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVV  423 (458)
T ss_dssp             HHHHHHHHHTTTTH---HH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHH
T ss_pred             HHHHHHHHhccHhh---hh-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHH-HHHHHHHHHHHhCCCCHHH
Confidence            88888865222111   11 2566777888888999999999999999865433322221 1346888999999999999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 043676          359 VTVCLIGLENILKVGEA  375 (446)
Q Consensus       359 ~~~~~~~l~~l~~~~~~  375 (446)
                      |..|+++|.++.+....
T Consensus       424 R~~a~~~l~~i~~~~~~  440 (458)
T d1ibrb_         424 RDTAAWTVGRICELLPE  440 (458)
T ss_dssp             HHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            99999999999876543

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.23  E-value=4.2e-09  Score=104.17  Aligned_cols=385  Identities=11%  Similarity=0.062  Sum_probs=240.5

Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCC-ChHHHHHHHHHHHHHcCCChhhHHHH---
Q 043676            9 AGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMRED-YPQLQYEAAWVLINIASGTSENTNVV---   84 (446)
Q Consensus         9 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~---   84 (446)
                      +.+.|+|+.+|..|-..|.++...+  .       .+.+..|.+.+.+++ ...+|..|+..|.|............   
T Consensus        12 ~~~~s~d~~~r~~Ae~~L~~~~~~~--~-------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~   82 (861)
T d2bpta1          12 NSILSPDQNIRLTSETQLKKLSNDN--F-------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQ   82 (861)
T ss_dssp             HHHHCSSHHHHHHHHHHHHHHHHHC--H-------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHhcC--c-------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhHHh
Confidence            4467899999999999998876532  1       145777888886543 36889999999988775332211100   


Q ss_pred             ---------HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hHHHHHHHHcCChHHHHHHhccccchhHHHHHHHH
Q 043676           85 ---------IDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRT  154 (446)
Q Consensus        85 ---------~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~  154 (446)
                               ....+-..++..+.++++.+|..+..+++.++... |...  -  ...++.++..+....+...+..++.+
T Consensus        83 ~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~--w--peli~~L~~~~~s~~~~~~~~~al~~  158 (861)
T d2bpta1          83 RWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGA--W--PELMKIMVDNTGAEQPENVKRASLLA  158 (861)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTC--C--HHHHHHHHHHTSTTSCHHHHHHHHHH
T ss_pred             hhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCc--h--HHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence                     01122356777788899999999999999887321 1000  0  01345666666444556778889999


Q ss_pred             HHHhhcCCCCCChhh---hhhhHHHHHHhhcC--CCHhHHHHHHHHHHHhccCCcHHHH-HHHHhCcHHHHHHhcCCCCc
Q 043676          155 LSNFCRGKPEPPFDQ---VRPALPALAQLVHS--NDEDVLTYACWSLSYLADGTNDKIQ-AVIEAGVCPRLVELLGHPSP  228 (446)
Q Consensus       155 L~~l~~~~~~~~~~~---~~~~~~~l~~ll~~--~~~~v~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~l~~ll~~~~~  228 (446)
                      |..++..........   ....++.+...+.+  .+..++..++.++.++......... ......+++.+...+.++++
T Consensus       159 l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  238 (861)
T d2bpta1         159 LGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDI  238 (861)
T ss_dssp             HHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCH
Confidence            999987653322222   23444555554443  3688999999999998765443221 11223466778888999999


Q ss_pred             cchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHH-----------
Q 043676          229 SVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVID-----------  297 (446)
Q Consensus       229 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-----------  297 (446)
                      .++..++.++..++...+......+..-+...+....++. ++.++..+...+..++............           
T Consensus       239 ~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  317 (861)
T d2bpta1         239 EVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNF  317 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            9999999999999875554444333332333334445556 8889999888888776421111111111           


Q ss_pred             -----cCChHHHHHHHhcC-------CcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHH
Q 043676          298 -----AGLIRPIVNLLQNA-------EFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIG  365 (446)
Q Consensus       298 -----~~~i~~L~~ll~~~-------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~  365 (446)
                           ..+++.+...+...       +...+..+..++..++..........     ..+.+...+.+.++..+..++.+
T Consensus       318 ~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~a~~~  392 (861)
T d2bpta1         318 ALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEP-----VLEFVEQNITADNWRNREAAVMA  392 (861)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHH-----HHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhh-----hcchhhhhhhhHHHHHHHHHHHH
Confidence                 12345555555432       23567777777776654322122222     24455566778899999999998


Q ss_pred             HHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 043676          366 LENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYW  425 (446)
Q Consensus       366 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  425 (446)
                      +..+........           ....+  ...++.+.....++++.++..+.+.+.++.
T Consensus       393 l~~i~~~~~~~~-----------~~~~l--~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~  439 (861)
T d2bpta1         393 FGSIMDGPDKVQ-----------RTYYV--HQALPSILNLMNDQSLQVKETTAWCIGRIA  439 (861)
T ss_dssp             HHHTSSSSCHHH-----------HHHHH--HHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcchhh-----------HHHHH--HHHHHHHHHHhcCcchhhhhHHHHHHHHHH
Confidence            888765433321           11222  224677778888999999999999888764

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.18  E-value=4.6e-10  Score=111.25  Aligned_cols=395  Identities=11%  Similarity=0.124  Sum_probs=227.4

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHh
Q 043676            7 LVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVID   86 (446)
Q Consensus         7 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~   86 (446)
                      +...+.+++...+..++..+..++... ......-.-..+++.+++.+.+++ +.++..++++++.++...+   ..+..
T Consensus       374 ~~~~~~~~~~~~~~~a~~~l~~i~~~~-~~~~~~~~l~~~l~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~---~~~~~  448 (861)
T d2bpta1         374 VEQNITADNWRNREAAVMAFGSIMDGP-DKVQRTYYVHQALPSILNLMNDQS-LQVKETTAWCIGRIADSVA---ESIDP  448 (861)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHTSSSS-CHHHHHHHHHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHG---GGSCT
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhc---hhhhh
Confidence            344566788999999999988876643 222222222357889999999998 8999999999999876211   11111


Q ss_pred             cCChHHHHHhhC---CCCHHHHHHHHHHHHHhhCC----Ch-HHHHHHHHcCChHHHHHHhc-cccchhHHHHHHHHHHH
Q 043676           87 HGAVPIFVKLLS---SPSDDVREQAVWALGNVAGD----SP-RCRDLVLSQGALIPLLAELN-EHAKLSMLRNATRTLSN  157 (446)
Q Consensus        87 ~~~i~~L~~~L~---~~~~~v~~~a~~~l~~l~~~----~~-~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~  157 (446)
                      ...++.++..+.   ..++.++..+++++..++..    .. .......  ..+..++.... ...+..++..+..++..
T Consensus       449 ~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~al~~  526 (861)
T d2bpta1         449 QQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYP--ALVDGLIGAANRIDNEFNARASAFSALTT  526 (861)
T ss_dssp             TTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHH--HHHHHHHHHHTCSCCGGGHHHHHHHHHHH
T ss_pred             HHhhhhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcccchhhHHHh--hHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence            223333333221   34678888888888777621    11 0100110  12334444442 23456788888888888


Q ss_pred             hhcCCCCCChhhhhhhHHHHHHhh----cCCC-----------HhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh
Q 043676          158 FCRGKPEPPFDQVRPALPALAQLV----HSND-----------EDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVEL  222 (446)
Q Consensus       158 l~~~~~~~~~~~~~~~~~~l~~ll----~~~~-----------~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~l  222 (446)
                      +....+...........+.+...+    ....           ..++..+..++..+....+.......+ .+++.+...
T Consensus       527 ~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~-~l~~~l~~~  605 (861)
T d2bpta1         527 MVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFFRL  605 (861)
T ss_dssp             HHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHHH-HHHHHHhhh
Confidence            877654333333333344433333    2111           234444555555544332222221111 455666666


Q ss_pred             cCC-CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCh
Q 043676          223 LGH-PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLI  301 (446)
Q Consensus       223 l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i  301 (446)
                      +.. .+..++..++.+++.++..........+. .+++.+...+.+. ++.++..|+.+++.++............ .++
T Consensus       606 l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~-~i~p~l~~~l~~~-~~~v~~~a~~~l~~i~~~~~~~~~~~~~-~i~  682 (861)
T d2bpta1         606 LEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYSD-AMM  682 (861)
T ss_dssp             HHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHHH-HHH
T ss_pred             cccCCchhHHHHHHHHHHHHHHHhhHHHHHHHH-HHhhHHHHHhCCC-CHHHHHHHHHHHHHHHHHhHHHhHhhHH-HHH
Confidence            655 45668888999999988755444444333 4778888899888 8899999999999987643333333332 478


Q ss_pred             HHHHHHHhcC--CcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCC----C-------HHHHHHHHHHHHH
Q 043676          302 RPIVNLLQNA--EFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCS----D-------PEIVTVCLIGLEN  368 (446)
Q Consensus       302 ~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~----~-------~~~~~~~~~~l~~  368 (446)
                      +.|++.+++.  +..+|..++.+++.++....+....++-.  +++.+.+.+...    +       .+++..+++++..
T Consensus       683 ~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  760 (861)
T d2bpta1         683 NVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLND--IMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVG  760 (861)
T ss_dssp             HHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence            8888888765  56889999999999876433333333222  455555554322    1       2467778887777


Q ss_pred             HHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhc----CCCHHHHHHHHHHHHHhc
Q 043676          369 ILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQS----HDNNEIHEKSVKIFKTYW  425 (446)
Q Consensus       369 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~----~~~~~v~~~a~~~l~~~~  425 (446)
                      ++....+..      ....++...+     ++.+..+..    +.+.++...+..++..+.
T Consensus       761 i~~~~~~~~------~~~~p~~~~i-----~~~i~~~~~~~~~~~~~~~~~~~~~~i~~l~  810 (861)
T d2bpta1         761 IVAGLHDKP------EALFPYVGTI-----FQFIAQVAEDPQLYSEDATSRAAVGLIGDIA  810 (861)
T ss_dssp             HHHHTTTCH------HHHGGGHHHH-----HHHHHHHHHCHHHHTSHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCH------HHHHHHHHHH-----HHHHHHHHhCCccCCCHHHHHHHHHHHHHHH
Confidence            765332211      0112223322     222333332    345677777777766543

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=6.9e-09  Score=102.89  Aligned_cols=396  Identities=13%  Similarity=0.084  Sum_probs=237.5

Q ss_pred             HHHHHhhcC--CCHHHHHHHHHHHHHHhcCCCCCcHH-----------HHHhcCCHHHHHHhhcCCCChHHHHHHHHHHH
Q 043676            5 PALVAGVWS--DDNSLQLEATTLSRKLLSFDRNPPIE-----------KVIQSGVVPRFVEFLMREDYPQLQYEAAWVLI   71 (446)
Q Consensus         5 ~~l~~~l~s--~~~~~~~~a~~~l~~l~~~~~~~~~~-----------~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~   71 (446)
                      ..|.+.+.+  .+..+|..|+-.|.+..... .....           .-....+...+++.+.+++  .++..++.+++
T Consensus        38 ~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~-~~~~~~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~--~~~~~~a~~i~  114 (876)
T d1qgra_          38 VELSRVLANPGNSQVARVAAGLQIKNSLTSK-DPDIKAQYQQRWLAIDANARREVKNYVLHTLGTET--YRPSSASQCVA  114 (876)
T ss_dssp             HHHHHHHHCTTSCHHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCC--SSSCHHHHHHH
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhhcc-ccchhhhhhcccccCCHHHHHHHHHHHHHHhcCCc--HHHHHHHHHHH
Confidence            344555543  34678888888888876542 11100           1112334556777777766  34556778888


Q ss_pred             HHcCCC-hhhHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhcc-ccchhH
Q 043676           72 NIASGT-SENTNVVIDHGAVPIFVKLLSSP--SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE-HAKLSM  147 (446)
Q Consensus        72 ~l~~~~-~~~~~~~~~~~~i~~L~~~L~~~--~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~~~  147 (446)
                      .++... |...    =.+.++.+.+.+.++  ++.++..++.++..++..-......-.....++.++..+.. +.+.++
T Consensus       115 ~i~~~~~p~~~----Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v  190 (876)
T d1qgra_         115 GIACAEIPVNQ----WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNV  190 (876)
T ss_dssp             HHHHHHGGGTC----CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHH
T ss_pred             HHHHHHCCccc----cHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHH
Confidence            877521 1000    025678888887653  47789999999999984321111000111245666776643 335678


Q ss_pred             HHHHHHHHHHhhcCCC--CCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC
Q 043676          148 LRNATRTLSNFCRGKP--EPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH  225 (446)
Q Consensus       148 ~~~a~~~L~~l~~~~~--~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~  225 (446)
                      +..++.++.+......  .........+++.+...+.+++++++..++.++..++...++.........+.+.+.....+
T Consensus       191 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~  270 (876)
T d1qgra_         191 KLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS  270 (876)
T ss_dssp             HHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Confidence            8889988887765541  11122234466777788888999999999999999987666555444444566677777888


Q ss_pred             CCccchhHHHHHHHHhhcCCchhhH--------------------HHHhcCChHHHHHHhccC------chHHHHHHHHH
Q 043676          226 PSPSVLTPALRTVGNIVTGDDFQTQ--------------------CIINHGAVPYLLDMLVHN------HEEIIKKEISW  279 (446)
Q Consensus       226 ~~~~~~~~a~~~l~~l~~~~~~~~~--------------------~~~~~~~~~~l~~~l~~~------~~~~v~~~a~~  279 (446)
                      ....++..++..+..++........                    ......+++.+...+...      .+..++..|..
T Consensus       271 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~  350 (876)
T d1qgra_         271 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGV  350 (876)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHH
Confidence            8888888888777776642211110                    011112333444444321      12347777777


Q ss_pred             HHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHH
Q 043676          280 IISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIV  359 (446)
Q Consensus       280 ~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~  359 (446)
                      ++..++......   +.. .+++.+...+.+.++..+..++.+++.+.............. ..++.+...+.++++.++
T Consensus       351 ~l~~l~~~~~~~---~~~-~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~l~d~~~~vr  425 (876)
T d1qgra_         351 CLMLLATCCEDD---IVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVI-QAMPTLIELMKDPSVVVR  425 (876)
T ss_dssp             HHHHHHHHHGGG---GHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHHHTCSSHHHH
T ss_pred             HHHHHHHHhhhh---hhh-hhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHH-HHHHHHHHhhcCCccHHH
Confidence            777765421111   111 134455566667788999999999999987666555444332 368889999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 043676          360 TVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYW  425 (446)
Q Consensus       360 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  425 (446)
                      ..+++++..+++........       ..+...+     ++.+.... ++++.++..+.+.+..+.
T Consensus       426 ~~a~~~l~~~~~~~~~~~~~-------~~~~~~~-----~~~l~~~l-~~~~~v~~~~~~~l~~l~  478 (876)
T d1qgra_         426 DTAAWTVGRICELLPEAAIN-------DVYLAPL-----LQCLIEGL-SAEPRVASNVCWAFSSLA  478 (876)
T ss_dssp             HHHHHHHHHHHHHCGGGTSS-------TTTHHHH-----HHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcchhhhh-------HHHhhhH-----HHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence            99999999998765443211       0011111     22333333 345777777776666553

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=5.4e-09  Score=103.70  Aligned_cols=356  Identities=10%  Similarity=0.061  Sum_probs=216.2

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCC-CcHHHHHhcCCHHHHHHhhcCCC-ChHHHHHHHHHHHHHcCCC-hhhH
Q 043676            5 PALVAGVWSDDNSLQLEATTLSRKLLSFDRN-PPIEKVIQSGVVPRFVEFLMRED-YPQLQYEAAWVLINIASGT-SENT   81 (446)
Q Consensus         5 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~~~~~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~-~~~~   81 (446)
                      ..+++.+.+++. .+..++.++..++..+-+ ...     .+++|.|.+.+.+++ .+.++..++.+|..++... ++.-
T Consensus        93 ~~ll~~l~~~~~-~~~~~a~~i~~i~~~~~p~~~W-----peli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~  166 (876)
T d1qgra_          93 NYVLHTLGTETY-RPSSASQCVAGIACAEIPVNQW-----PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL  166 (876)
T ss_dssp             HHHHHHTTTCCS-SSCHHHHHHHHHHHHHGGGTCC-----TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHhcCCcH-HHHHHHHHHHHHHHHHCCcccc-----HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHH
Confidence            345666666554 444566677766553200 001     257888988887654 3567888999999887521 1111


Q ss_pred             HHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChHHHHH-HHHcCChHHHHHHhccccchhHHHHHHHHHHHh
Q 043676           82 NVVIDHGAVPIFVKLLSS--PSDDVREQAVWALGNVAGDSPRCRDL-VLSQGALIPLLAELNEHAKLSMLRNATRTLSNF  158 (446)
Q Consensus        82 ~~~~~~~~i~~L~~~L~~--~~~~v~~~a~~~l~~l~~~~~~~~~~-~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l  158 (446)
                      .. .-..+++.++..+.+  ++..++..++.++.+........... ....-.++.+...+ .+++++++..++.++..+
T Consensus       167 ~~-~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~v~~~~~~~l~~l  244 (876)
T d1qgra_         167 QD-KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT-QCPDTRVRVAALQNLVKI  244 (876)
T ss_dssp             GG-GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHH
Confidence            11 112456777777765  45789999999998887543321110 11111234444445 678899999999999999


Q ss_pred             hcCCCCCChhhh-hhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcHHHH--------------------HHHHhCcHH
Q 043676          159 CRGKPEPPFDQV-RPALPALAQLVHSNDEDVLTYACWSLSYLADGTNDKIQ--------------------AVIEAGVCP  217 (446)
Q Consensus       159 ~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~--------------------~~~~~~~~~  217 (446)
                      +...+....... ..+.+.+.....+.+++++..++..+..++........                    ......+++
T Consensus       245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  324 (876)
T d1qgra_         245 MSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP  324 (876)
T ss_dssp             HHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            877533322222 34455666677778888888888877776642211110                    011123444


Q ss_pred             HHHHhcCC-------CCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC-CH
Q 043676          218 RLVELLGH-------PSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG-NR  289 (446)
Q Consensus       218 ~l~~ll~~-------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~-~~  289 (446)
                      .+...+..       .+..++..|..++..++...+...-.    .+++.+...+.++ ++..|..++..++.+..+ ..
T Consensus       325 ~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~----~~~~~i~~~l~~~-~~~~r~~~~~~l~~~~~~~~~  399 (876)
T d1qgra_         325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP----HVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEP  399 (876)
T ss_dssp             HHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHH----HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCH
T ss_pred             hhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhhhh----hhHHHHHHhhccc-hHHHHHHHHHHHHhhhhhhhH
Confidence            55555443       23346777778877776543322211    1345566677777 889999999999998764 34


Q ss_pred             HHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHH
Q 043676          290 EQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENI  369 (446)
Q Consensus       290 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l  369 (446)
                      ........ .+++.+...+.++++.++..++++++.++..........-.-...++.+...+. +++.++..+++++.++
T Consensus       400 ~~~~~~~~-~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~v~~~~~~~l~~l  477 (876)
T d1qgra_         400 SQLKPLVI-QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS-AEPRVASNVCWAFSSL  477 (876)
T ss_dssp             HHHHHHHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTT-SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHH
Confidence            44443333 578899999999999999999999999875321110000000012444555454 4788999999999998


Q ss_pred             HHhhhh
Q 043676          370 LKVGEA  375 (446)
Q Consensus       370 ~~~~~~  375 (446)
                      ......
T Consensus       478 ~~~~~~  483 (876)
T d1qgra_         478 AEAAYE  483 (876)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            775543

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.98  E-value=1.1e-07  Score=83.23  Aligned_cols=305  Identities=16%  Similarity=0.113  Sum_probs=190.8

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH-hcCCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHH
Q 043676            5 PALVAGVWSDDNSLQLEATTLSRKLLSFDRNPPIEKVI-QSGVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNV   83 (446)
Q Consensus         5 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   83 (446)
                      +.+...+.+++......+...+..+++.. .......- .......+-.+...++ ...+..++.++..+.. .++.|..
T Consensus       125 ~~f~~~l~~~d~~~~~~s~~i~~ll~~~~-~~~~~~~e~l~~~~~~l~~l~~~~~-~~~~~i~v~~lq~llr-~~~~R~~  201 (477)
T d1ho8a_         125 QLFDVSLKGDFQTVLISGFNVVSLLVQNG-LHNVKLVEKLLKNNNLINILQNIEQ-MDTCYVCIRLLQELAV-IPEYRDV  201 (477)
T ss_dssp             HHHHHCSCSSHHHHHHHHHHHHHHHTSTT-TCCHHHHHHHHHCHHHHHHHHCTTC-HHHHHHHHHHHHHHHT-SHHHHHH
T ss_pred             HHHHHhccCchhHHHHHHHHHHHHHHhcc-ccccchHHHHHHhhHHHHHhhcccc-cchHHHHHHHHHHHhc-CccHHHH
Confidence            34556677777778888888888877764 23222111 1122333444446666 7889999999999998 7888888


Q ss_pred             HHh--cCChHHHHHhhCC-----------------CCHHHHHHHHHHHHHhhCCChHHHHHHHHcC--ChHHHHHHhccc
Q 043676           84 VID--HGAVPIFVKLLSS-----------------PSDDVREQAVWALGNVAGDSPRCRDLVLSQG--ALIPLLAELNEH  142 (446)
Q Consensus        84 ~~~--~~~i~~L~~~L~~-----------------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~--~i~~l~~~l~~~  142 (446)
                      +..  ...+..+++.|+.                 ....+...++.+++-++. .+.....+.+.+  .++.++.++...
T Consensus       202 fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~l~~~~~~~i~~l~~i~~~s  280 (477)
T d1ho8a_         202 IWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKIT  280 (477)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHC
T ss_pred             HHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence            753  3445556655532                 124678999999999995 444555555543  488888888778


Q ss_pred             cchhHHHHHHHHHHHhhcCCCCCC------hhhhhhhHHHHHHhhcC--CCHhHHHHHHHHHHHhccCCcHHHHHHHHhC
Q 043676          143 AKLSMLRNATRTLSNFCRGKPEPP------FDQVRPALPALAQLVHS--NDEDVLTYACWSLSYLADGTNDKIQAVIEAG  214 (446)
Q Consensus       143 ~~~~~~~~a~~~L~~l~~~~~~~~------~~~~~~~~~~l~~ll~~--~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~  214 (446)
                      ..+.+.+-++.++.|++.......      .....++++.+..+...  .|+++.+..-..-..+-..    .+   +..
T Consensus       281 ~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~----~k---~lT  353 (477)
T d1ho8a_         281 IKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENE----YQ---ELT  353 (477)
T ss_dssp             CSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHH----HH---TCC
T ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH----HH---hcC
Confidence            889999999999999987642211      11223444444333332  2666655432221111100    00   000


Q ss_pred             cHHHH-----HHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhcc---------CchHHHHHHHHHH
Q 043676          215 VCPRL-----VELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVH---------NHEEIIKKEISWI  280 (446)
Q Consensus       215 ~~~~l-----~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~---------~~~~~v~~~a~~~  280 (446)
                      -++.-     -..|. =+|.-+....| -.|.....+...+      ++..|+++|++         +.++.+..-||.-
T Consensus       354 sfd~Y~~Ev~Sg~L~-WSP~H~se~FW-~EN~~kf~e~~~~------llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~D  425 (477)
T d1ho8a_         354 SFDEYVAELDSKLLC-WSPPHVDNGFW-SDNIDEFKKDNYK------IFRQLIELLQAKVRNGDVNAKQEKIIIQVALND  425 (477)
T ss_dssp             HHHHHHHHHHHTCCC-CCGGGGCHHHH-HHHSGGGSSGGGH------HHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHhcCCCC-CCCCcCChhHH-HHHHHhhcccchH------HHHHHHHHHhhcccccccccCCCcceeehhhhh
Confidence            01111     11111 12222223333 3344443333332      56788888852         2267788889999


Q ss_pred             HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhcc
Q 043676          281 ISNITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATS  328 (446)
Q Consensus       281 l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  328 (446)
                      ++.++...|..+..+-+.|+=..+++++.++|++||.+|+.|+..+..
T Consensus       426 iGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         426 ITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  473 (477)
T ss_dssp             HHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            999999888888878788999999999999999999999999988754

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.97  E-value=2.1e-08  Score=87.79  Aligned_cols=336  Identities=12%  Similarity=0.150  Sum_probs=202.1

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHH---HHHhcC--ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 043676           45 GVVPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTN---VVIDHG--AVPIFVKLLSSPSDDVREQAVWALGNVAGDS  119 (446)
Q Consensus        45 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~---~~~~~~--~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~  119 (446)
                      ..+..++.++.....+++....+..+..+..+++....   .+.+..  .-..+...+..++.-+...+...+..++...
T Consensus        74 ~~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~  153 (477)
T d1ho8a_          74 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG  153 (477)
T ss_dssp             TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhcc
Confidence            46788899988765588888888888888875443222   111211  1234555666666667777777777777544


Q ss_pred             hH---HHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh--hhhhhHHHHHHhhcCCCHhHHHHHHH
Q 043676          120 PR---CRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFD--QVRPALPALAQLVHSNDEDVLTYACW  194 (446)
Q Consensus       120 ~~---~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~~~~l~~ll~~~~~~v~~~~~~  194 (446)
                      ..   ..+....   ...+...+....+......++.++..+...++.+...  .....++.++..++.           
T Consensus       154 ~~~~~~~e~l~~---~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~-----------  219 (477)
T d1ho8a_         154 LHNVKLVEKLLK---NNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQR-----------  219 (477)
T ss_dssp             TCCHHHHHHHHH---CHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHH-----------
T ss_pred             ccccchHHHHHH---hhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHH-----------
Confidence            32   2222222   2234444445566677777777887777665333332  223445555554441           


Q ss_pred             HHHHhccCCcHHHHHHHHhCcHHHHHHhc-CCCCccchhHHHHHHHHhhcCCchhhHHHHhc--CChHHHHHHhccCchH
Q 043676          195 SLSYLADGTNDKIQAVIEAGVCPRLVELL-GHPSPSVLTPALRTVGNIVTGDDFQTQCIINH--GAVPYLLDMLVHNHEE  271 (446)
Q Consensus       195 ~l~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~  271 (446)
                          .....           ....++.-. ......+...++.+++-|+. ++.....+.+.  +.++.++.+++.....
T Consensus       220 ----a~~~~-----------~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~l~~~~~~~i~~l~~i~~~s~KE  283 (477)
T d1ho8a_         220 ----ATDSQ-----------LATRIVATNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKE  283 (477)
T ss_dssp             ----HHC------------------------CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSH
T ss_pred             ----Hhccc-----------ccchhhcccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence                11100           001111111 11233567788999998887 55556556554  3478888888766578


Q ss_pred             HHHHHHHHHHHHHhcCC----HH-HHHHHHHcCChHHHHHHHhcC---CcchHHHHHHHHHHhccCC-------------
Q 043676          272 IIKKEISWIISNITAGN----RE-QIQAVIDAGLIRPIVNLLQNA---EFDTKKEAAWAISNATSGG-------------  330 (446)
Q Consensus       272 ~v~~~a~~~l~~l~~~~----~~-~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~~l~~~~-------------  330 (446)
                      ++..-++.++.|++...    +. ....++..++++. +..|...   |+++.... ..|.......             
T Consensus       284 KvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~-l~~L~~r~~~Dedl~edl-~~L~~~L~~~~k~lTsfd~Y~~E  361 (477)
T d1ho8a_         284 KVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPT-VQSLSERKYSDEELRQDI-SNLKEILENEYQELTSFDEYVAE  361 (477)
T ss_dssp             HHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHH-HHHHHSSCCSSHHHHHHH-HHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHH-HHHHhcCCCCCHHHHHHH-HHHHHHHHHHHHhcCcHHHHHHH
Confidence            88888999999998631    11 2233455566655 4555543   55554332 2222221100             


Q ss_pred             --------CH---------HHHHHHHHc--CChHHHHhccc----------CCCHHHHHHHHHHHHHHHHhhhhhhcccC
Q 043676          331 --------TQ---------EQIKHLVRE--GCVKPLCDLLL----------CSDPEIVTVCLIGLENILKVGEAERNMGT  381 (446)
Q Consensus       331 --------~~---------~~~~~l~~~--~~i~~L~~ll~----------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  381 (446)
                              +|         ++...|.+.  ..+..|+++|+          +.|+.+...||.=+..+++..+..     
T Consensus       362 v~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~g-----  436 (477)
T d1ho8a_         362 LDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES-----  436 (477)
T ss_dssp             HHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH-----
T ss_pred             HhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcch-----
Confidence                    11         112222222  24778888885          347778888999999999988876     


Q ss_pred             CCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 043676          382 TIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFKTYW  425 (446)
Q Consensus       382 ~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  425 (446)
                              +..+.+.|+-+.+.+|++|++++|+..|..+++++.
T Consensus       437 --------r~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  472 (477)
T d1ho8a_         437 --------IDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII  472 (477)
T ss_dssp             --------HHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             --------hHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence                    588899999999999999999999999999988763

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.57  E-value=1.6e-08  Score=72.16  Aligned_cols=109  Identities=17%  Similarity=0.215  Sum_probs=88.5

Q ss_pred             cCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChH
Q 043676          223 LGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAGLIR  302 (446)
Q Consensus       223 l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~  302 (446)
                      |.++++.+|..|+++|+.+..            ..++.|+..+.++ ++.+|..|+++|+++.  .+         +.++
T Consensus         1 L~D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~-~~~vR~~a~~~L~~~~--~~---------~~~~   56 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNE-DWRIRGAAAWIIGNFQ--DE---------RAVE   56 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCS-CHHHHHHHHHHHGGGC--SH---------HHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhCH------------HHHHHHHHHHcCC-CHHHHHHHHHHHHhcc--hh---------hhHH
Confidence            467788899999888876532            2467788999988 9999999999999873  22         2578


Q ss_pred             HHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHH
Q 043676          303 PIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLE  367 (446)
Q Consensus       303 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~  367 (446)
                      .|..+++++++.+|..|+++|+.+..   +.         .++.|..+++++++.++..++.+|.
T Consensus        57 ~L~~~l~d~~~~VR~~a~~aL~~i~~---~~---------~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          57 PLIKLLEDDSGFVRSGAARSLEQIGG---ER---------VRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHHCCTHHHHHHHHHHHHHCS---HH---------HHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHhhhccchhHHHHHHHHHHHHhCc---cc---------hHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            89999999999999999999998842   22         3677888999999999999998875

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.49  E-value=2.1e-08  Score=71.65  Aligned_cols=109  Identities=20%  Similarity=0.241  Sum_probs=88.4

Q ss_pred             hcCCCChHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChH
Q 043676           54 LMREDYPQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALI  133 (446)
Q Consensus        54 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~  133 (446)
                      |.+++ +.+|..|+++|+.+..            ..++.|++.|.++++.+|..++++|+++..  +         +.++
T Consensus         1 L~D~~-~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--~---------~~~~   56 (111)
T d1te4a_           1 MADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------RAVE   56 (111)
T ss_dssp             CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------HHHH
T ss_pred             CCCcC-HHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch--h---------hhHH
Confidence            34556 6888888888876532            357889999999999999999999998752  1         1367


Q ss_pred             HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHH
Q 043676          134 PLLAELNEHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLS  197 (446)
Q Consensus       134 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~  197 (446)
                      .+...+ .++++.++..++++|..+..          ...++.|..+++++++.++..++.+|.
T Consensus        57 ~L~~~l-~d~~~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          57 PLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHhhh-ccchhHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            888888 78899999999999998732          467889999999999999999988764

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=0.0024  Score=52.10  Aligned_cols=201  Identities=8%  Similarity=0.028  Sum_probs=146.0

Q ss_pred             hhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCCcH----HHHHHHH-hCcHHHHHHhcCCCCccchhHHHHHHHHhhcCC
Q 043676          171 RPALPALAQLVHSNDEDVLTYACWSLSYLADGTND----KIQAVIE-AGVCPRLVELLGHPSPSVLTPALRTVGNIVTGD  245 (446)
Q Consensus       171 ~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~~~----~~~~~~~-~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~  245 (446)
                      .+.+..++..|..-+.+.|..+..++.++.+...+    ....+.. .+++..|+..-  +++++...+-..|...+. .
T Consensus        68 ~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gy--e~~eiAl~~G~mLREcik-~  144 (330)
T d1upka_          68 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECIR-H  144 (330)
T ss_dssp             HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHHT-S
T ss_pred             hChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhc--CCcchhhhhhHHHHHHHh-h
Confidence            46788888888888999999999999998865332    2232332 13444444443  344455555555555554 6


Q ss_pred             chhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHHHHcC---ChHHHHHHHhcCCcchHHHHHHH
Q 043676          246 DFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAVIDAG---LIRPIVNLLQNAEFDTKKEAAWA  322 (446)
Q Consensus       246 ~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~---~i~~L~~ll~~~~~~v~~~a~~a  322 (446)
                      +...+.++....+..+.+.+..+ ..++...|..++..+....+.....++..+   ++.....++.+++.-+|..++..
T Consensus       145 e~lak~iL~s~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKL  223 (330)
T d1upka_         145 EPLAKIILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL  223 (330)
T ss_dssp             HHHHHHHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHHccHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            67778888888899999999999 999999999999998776676666666544   57777889999999999999999


Q ss_pred             HHHhccCCC-HH-HHHHHHHcCChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhh
Q 043676          323 ISNATSGGT-QE-QIKHLVREGCVKPLCDLLLCSDPEIVTVCLIGLENILKVGEA  375 (446)
Q Consensus       323 L~~l~~~~~-~~-~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~  375 (446)
                      |+.+..... .. ...++.+..-+..++.+|.+.+..++..|..++.-++....+
T Consensus       224 LgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnK  278 (330)
T d1upka_         224 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNK  278 (330)
T ss_dssp             HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCC
Confidence            999976321 11 122333334588899999999999999999888877765444

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=0.0031  Score=51.38  Aligned_cols=199  Identities=12%  Similarity=0.095  Sum_probs=142.4

Q ss_pred             HHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCCchh----hHHHHh-cCChHHHHHHhccCchHHHHHHHHHHHHH
Q 043676          209 AVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQ----TQCIIN-HGAVPYLLDMLVHNHEEIIKKEISWIISN  283 (446)
Q Consensus       209 ~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~----~~~~~~-~~~~~~l~~~l~~~~~~~v~~~a~~~l~~  283 (446)
                      .+...+++..++..|..-+.+.|..+..+++++.+.....    .+.+.. ..++..|+....   ++++-..+...|..
T Consensus        64 e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye---~~eiAl~~G~mLRE  140 (330)
T d1upka_          64 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE---SPEIALNCGIMLRE  140 (330)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG---STTTHHHHHHHHHH
T ss_pred             HHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC---CcchhhhhhHHHHH
Confidence            4666799999999999889999999999999998654432    344442 233334444433   44555566666666


Q ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcC---ChHHHHhcccCCCHHHHH
Q 043676          284 ITAGNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREG---CVKPLCDLLLCSDPEIVT  360 (446)
Q Consensus       284 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~---~i~~L~~ll~~~~~~~~~  360 (446)
                      ++. .+.....+.....+..+.+.++.++.++...|..++..+.... +.....+...+   ++..+..++.+++.-++.
T Consensus       141 cik-~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~h-k~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrR  218 (330)
T d1upka_         141 CIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRH-KLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR  218 (330)
T ss_dssp             HHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHh-hHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhC-HHHHHHHHHHhHHHHHHHHHHHhcCCchHHHH
Confidence            654 4666777888888999999999999999999999999887763 44444444433   466777899999999999


Q ss_pred             HHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcCCCHHHHHHHHHHHH
Q 043676          361 VCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHEKSVKIFK  422 (446)
Q Consensus       361 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~  422 (446)
                      .++..|..++-...+...          +.+.+.+..-+..+..|+.+++..|+-.|-.+..
T Consensus       219 qSlKLLgelLldr~N~~v----------m~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFK  270 (330)
T d1upka_         219 QSLKLLGELLLDRHNFTI----------MTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFK  270 (330)
T ss_dssp             HHHHHHHHHHHSGGGHHH----------HHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhHHHH----------HHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhh
Confidence            999999999976666432          2345555556667777788877777666554444

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=97.12  E-value=0.058  Score=45.29  Aligned_cols=245  Identities=14%  Similarity=0.129  Sum_probs=140.4

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHHcCCChhhHHHHHh----cC---ChHHHHHhhCCCC--HHHHHHHHHHHHHhhC
Q 043676           47 VPRFVEFLMREDYPQLQYEAAWVLINIASGTSENTNVVID----HG---AVPIFVKLLSSPS--DDVREQAVWALGNVAG  117 (446)
Q Consensus        47 ~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~----~~---~i~~L~~~L~~~~--~~v~~~a~~~l~~l~~  117 (446)
                      +-.|+++++.-+.+++..    +...+ ...++.+..+.+    .|   .+..+.+.+.+..  .......+..+.....
T Consensus        45 F~~Lv~~lR~~~~e~l~~----v~~~~-~~~~~~r~~~lDal~~~GT~~a~~~i~~~I~~~~ls~~ea~~~l~~l~~~~~  119 (336)
T d1lsha1          45 FLRLTAFLRNVDAGVLQS----IWHKL-HQQKDYRRWILDAVPAMATSEALLFLKRTLASEQLTSAEATQIVASTLSNQQ  119 (336)
T ss_dssp             HHHHHHHHTTSCHHHHHH----HHHHH-TTSHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHCCCHHHHHH----HHHHH-hcChhHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccCC
Confidence            446667777666222222    12222 224555554432    22   3455666665533  3333334444443333


Q ss_pred             CChHHHHHHHHcCChHHHHHHhcc---ccchhHHHHHHHHHHHhhcC----CCCCChhhhhhhHHHHHHhhcCCCHhHHH
Q 043676          118 DSPRCRDLVLSQGALIPLLAELNE---HAKLSMLRNATRTLSNFCRG----KPEPPFDQVRPALPALAQLVHSNDEDVLT  190 (446)
Q Consensus       118 ~~~~~~~~~~~~~~i~~l~~~l~~---~~~~~~~~~a~~~L~~l~~~----~~~~~~~~~~~~~~~l~~ll~~~~~~v~~  190 (446)
                      -+++         .+..+..++..   ..++.++..+..+++++...    .+.........+...+.......+.+-+.
T Consensus       120 Pt~~---------~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  190 (336)
T d1lsha1         120 ATRE---------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIV  190 (336)
T ss_dssp             CCHH---------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCHH---------HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHH
Confidence            2222         23455555522   13566777777777766543    23333333344455555556677777778


Q ss_pred             HHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC-------CccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHH
Q 043676          191 YACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHP-------SPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLD  263 (446)
Q Consensus       191 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~  263 (446)
                      .++.+|+|+..  +         +.++.+..++...       +..+|..|++++.+++...+....        +.+..
T Consensus       191 ~~LkaLGN~g~--p---------~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v~--------~~l~~  251 (336)
T d1lsha1         191 LALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLP  251 (336)
T ss_dssp             HHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHH
T ss_pred             HHHHHHhccCC--H---------hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHHH--------HHHHH
Confidence            88999999753  2         4456777777542       345889999999999886654332        34455


Q ss_pred             Hhcc-CchHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-CCcchHHHHHHHHHHhccCCCHHH
Q 043676          264 MLVH-NHEEIIKKEISWIISNITAGNREQIQAVIDAGLIRPIVNLLQN-AEFDTKKEAAWAISNATSGGTQEQ  334 (446)
Q Consensus       264 ~l~~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~  334 (446)
                      ++.+ ..+.++|..|+..+... .-+..         .+..+...+.. .+..|.......|.+++....|..
T Consensus       252 i~~n~~e~~EvRiaA~~~lm~t-~P~~~---------~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~P~~  314 (336)
T d1lsha1         252 IFLNVAIKSELRIRSCIVFFES-KPSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEF  314 (336)
T ss_dssp             HHHCTTSCHHHHHHHHHHHHHT-CCCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGGG
T ss_pred             HHcCCCCChHHHHHHHHHHHhc-CCCHH---------HHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCcch
Confidence            5433 33788999998888654 22222         44556666644 477899999999999988766543

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.74  E-value=0.017  Score=56.71  Aligned_cols=179  Identities=11%  Similarity=0.121  Sum_probs=105.9

Q ss_pred             hHHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChH------------HHHHHH
Q 043676           60 PQLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPR------------CRDLVL  127 (446)
Q Consensus        60 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~------------~~~~~~  127 (446)
                      +.++..++++++..+.....  ..+  ..+++.++.+|.+++..++..|++++..++.....            ....+.
T Consensus       472 ~~lr~~~~~~i~~~~~~~~~--~~~--~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~  547 (959)
T d1wa5c_         472 IILRVDAIKYIYTFRNQLTK--AQL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE  547 (959)
T ss_dssp             HHHHHHHHHHHHHTGGGSCH--HHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHH
T ss_pred             HHHHHHHHHHHHHHHhhccH--HHH--HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHH
Confidence            67999999999998863221  111  24588999999999999999999999999843211            000000


Q ss_pred             HcCChHHHHHHhccccch----hHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc----C-CCHhHHHHHHHHHHH
Q 043676          128 SQGALIPLLAELNEHAKL----SMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVH----S-NDEDVLTYACWSLSY  198 (446)
Q Consensus       128 ~~~~i~~l~~~l~~~~~~----~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~----~-~~~~v~~~~~~~l~~  198 (446)
                        ..+..++..+......    .....++.++..+..............+++.+...+.    + .++.....+..++..
T Consensus       548 --~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~  625 (959)
T d1wa5c_         548 --ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGA  625 (959)
T ss_dssp             --HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence              1233444444222211    1123455555555444323223334455555555443    2 256777788888887


Q ss_pred             hccCC-cHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHHHhhcCC
Q 043676          199 LADGT-NDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVGNIVTGD  245 (446)
Q Consensus       199 l~~~~-~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~  245 (446)
                      +.... ++... -....++|.+...+..........++..+..+....
T Consensus       626 l~~~~~~~~~~-~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~  672 (959)
T d1wa5c_         626 ILNYTQRQNLP-LLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS  672 (959)
T ss_dssp             HHHTSCGGGHH-HHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred             HHHhcCchhHH-HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhC
Confidence            76543 22332 334467788888887777777777877777666433

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.72  E-value=0.00042  Score=55.17  Aligned_cols=113  Identities=7%  Similarity=0.078  Sum_probs=61.6

Q ss_pred             HHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcCCHHHHHHH
Q 043676          216 CPRLVELLGHPSPSVLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAGNREQIQAV  295 (446)
Q Consensus       216 ~~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~  295 (446)
                      +..|..+++++++.||..++..|.                  .+.+..++.++ +..||..++..+.             
T Consensus        68 ~~~L~~Ll~D~d~~VR~~AA~~Lp------------------~~~L~~L~~D~-d~~VR~~aa~~l~-------------  115 (233)
T d1lrva_          68 VEALTPLIRDSDEVVRRAVAYRLP------------------REQLSALMFDE-DREVRITVADRLP-------------  115 (233)
T ss_dssp             GGGGGGGTTCSSHHHHHHHHTTSC------------------SGGGGGTTTCS-CHHHHHHHHHHSC-------------
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHcC------------------HHHHHHHhcCC-ChhHHHHHHhccC-------------
Confidence            456778888888888888865431                  12344555566 6677766554321             


Q ss_pred             HHcCChHHHHHHHhcCCcchHHHHHHH-----HHHhccCCCHHHHHHHHHcCChHHHHhcccCCCHHHHHHHHHH
Q 043676          296 IDAGLIRPIVNLLQNAEFDTKKEAAWA-----ISNATSGGTQEQIKHLVREGCVKPLCDLLLCSDPEIVTVCLIG  365 (446)
Q Consensus       296 ~~~~~i~~L~~ll~~~~~~v~~~a~~a-----L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~~~~~  365 (446)
                           .+.|..++.++++.|+..++..     |..+....+++.+......-..+.|..+++++++.++..+...
T Consensus       116 -----~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~  185 (233)
T d1lrva_         116 -----LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASR  185 (233)
T ss_dssp             -----TGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHH
T ss_pred             -----HHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHh
Confidence                 1223344445555555544432     1222222333333333333445667777777777777766644

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.45  E-value=0.025  Score=55.38  Aligned_cols=257  Identities=11%  Similarity=0.104  Sum_probs=134.5

Q ss_pred             HHHHHHHHHHHHHcCCChhhHHHHHhcCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCCh-------------HHHHH
Q 043676           61 QLQYEAAWVLINIASGTSENTNVVIDHGAVPIFVKLLS--SPSDDVREQAVWALGNVAGDSP-------------RCRDL  125 (446)
Q Consensus        61 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~--~~~~~v~~~a~~~l~~l~~~~~-------------~~~~~  125 (446)
                      ..+..|...+..++...++.....+...+...+.....  +.+...++.++.+++.+.....             .....
T Consensus       376 ~~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  455 (959)
T d1wa5c_         376 TRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDF  455 (959)
T ss_dssp             CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHH
T ss_pred             cHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHH
Confidence            34666666777776633332222111111112222222  2567778888888887763211             01111


Q ss_pred             HHHcCChHHHHHHhc--cccchhHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCHhHHHHHHHHHHHhccCC
Q 043676          126 VLSQGALIPLLAELN--EHAKLSMLRNATRTLSNFCRGKPEPPFDQVRPALPALAQLVHSNDEDVLTYACWSLSYLADGT  203 (446)
Q Consensus       126 ~~~~~~i~~l~~~l~--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~~~~~l~~l~~~~  203 (446)
                      +     ...+...+.  .....-++..++|+++..+....   ......+++.++.++.+++..++..+++++..++...
T Consensus       456 l-----~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~---~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~  527 (959)
T d1wa5c_         456 F-----TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIR  527 (959)
T ss_dssp             H-----HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCB
T ss_pred             H-----HHHHHHHHccCCCchHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhh
Confidence            1     112222231  22345688899999999877542   2345688999999999999999999999999987532


Q ss_pred             cH-----------HHHHHHHhCcHHHHHHhcCCCCcc-----chhHHHHHHHHhhcCCchhhHHHHhcCChHHHHH----
Q 043676          204 ND-----------KIQAVIEAGVCPRLVELLGHPSPS-----VLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLD----  263 (446)
Q Consensus       204 ~~-----------~~~~~~~~~~~~~l~~ll~~~~~~-----~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~----  263 (446)
                      ..           ....... .++..++..+......     ....++.++..+.....+...... ..+++.+..    
T Consensus       528 ~~~~~~~~~~~~~~l~p~l~-~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~-~~i~~~l~~~~~~  605 (959)
T d1wa5c_         528 ESNTSPAFIFHKEDISNSTE-ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTI  605 (959)
T ss_dssp             SCSSSCCBSSCGGGTTTTHH-HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHH
T ss_pred             cccccchhhccHHHHHhhHH-HHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            21           1111111 2334444444332221     223455666655432221111111 112333333    


Q ss_pred             HhccCchHHHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCCcchHHHHHHHHHHhcc
Q 043676          264 MLVHNHEEIIKKEISWIISNITA-GNREQIQAVIDAGLIRPIVNLLQNAEFDTKKEAAWAISNATS  328 (446)
Q Consensus       264 ~l~~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  328 (446)
                      ..+++.++.....+..+++.+.. .+++....+. ..++|.+...++....+....+...+..+..
T Consensus       606 ~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~-~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~  670 (959)
T d1wa5c_         606 MAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV-DSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE  670 (959)
T ss_dssp             HTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred             HhcCccchHHHHHHHHHHHHHHHhcCchhHHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence            33444355666677777777754 2333333333 3567777777777666666667766665543

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.23  E-value=0.0052  Score=48.66  Aligned_cols=145  Identities=12%  Similarity=0.064  Sum_probs=84.9

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHH-----HHhcCCCCCc-HHHHHhcCCHHHHHHhhcCCCChHHHHHHHHH-----HHH
Q 043676            4 FPALVAGVWSDDNSLQLEATTLSR-----KLLSFDRNPP-IEKVIQSGVVPRFVEFLMREDYPQLQYEAAWV-----LIN   72 (446)
Q Consensus         4 i~~l~~~l~s~~~~~~~~a~~~l~-----~l~~~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~~~~~~a~~~-----L~~   72 (446)
                      +..|..+++.+++.++..+++.|.     .++... +.. +......-..+.|..++.+++ ..++..++..     |..
T Consensus        68 ~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~-d~~VR~~aa~~l~~~~L~~Ll~D~d-~~VR~~aa~~~~~~~L~~  145 (233)
T d1lrva_          68 VEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDE-DREVRITVADRLPLEQLEQMAADRD-YLVRAYVVQRIPPGRLFR  145 (233)
T ss_dssp             GGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCS-CHHHHHHHHHHSCTGGGGGGTTCSS-HHHHHHHHHHSCGGGGGG
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCC-ChhHHHHHHhccCHHHHHHHhcCCC-HHHHHHHHhccchhHHHH
Confidence            445677788889999998886542     222221 111 222333333566777777777 7888887764     222


Q ss_pred             HcC-CChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHH-----HhhCC-ChHHHHHHHHcCChHHHHHHhccccch
Q 043676           73 IAS-GTSENTNVVIDHGAVPIFVKLLSSPSDDVREQAVWALG-----NVAGD-SPRCRDLVLSQGALIPLLAELNEHAKL  145 (446)
Q Consensus        73 l~~-~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~-----~l~~~-~~~~~~~~~~~~~i~~l~~~l~~~~~~  145 (446)
                      +.. .+++.+..+...-..+.|..+++++++.++..++..+.     .+..+ +...+....+. ..+.++..| .++++
T Consensus       146 L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L~~~~L~~l~~D~d~~VR~aaae~-~~~~ll~~L-~D~d~  223 (233)
T d1lrva_         146 FMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEH-ASLEALREL-DEPDP  223 (233)
T ss_dssp             TTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHH-SCHHHHHHC-CCCCH
T ss_pred             HhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHhcCcHHHHHHHhCCCHHHHHHHHHh-ccHHHHHHh-CCCCH
Confidence            333 34556666665555677788888888888887776432     33322 23344444433 334556666 56667


Q ss_pred             hHHHHHH
Q 043676          146 SMLRNAT  152 (446)
Q Consensus       146 ~~~~~a~  152 (446)
                      .++..+.
T Consensus       224 ~VR~aA~  230 (233)
T d1lrva_         224 EVRLAIA  230 (233)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7766654

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=95.95  E-value=0.15  Score=42.56  Aligned_cols=165  Identities=15%  Similarity=0.142  Sum_probs=108.2

Q ss_pred             hHHHHHhhCC----CCHHHHHHHHHHHHHhhC----CChHHHHHHHHcCChHHHHHHhc---cccchhHHHHHHHHHHHh
Q 043676           90 VPIFVKLLSS----PSDDVREQAVWALGNVAG----DSPRCRDLVLSQGALIPLLAELN---EHAKLSMLRNATRTLSNF  158 (446)
Q Consensus        90 i~~L~~~L~~----~~~~v~~~a~~~l~~l~~----~~~~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l  158 (446)
                      +..+..++.+    .++.++..+..++++++.    ..+.+.     ...++.+...+.   ...+.+-+..++.+|+|+
T Consensus       125 l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~-----~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~  199 (336)
T d1lsha1         125 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCP-----DELLQPLHDLLSQSSDRAKEEEIVLALKALGNA  199 (336)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCC-----GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCc-----HHHHHHHHHHHHHhhcccchHHHHHHHHHHhcc
Confidence            5666667765    468888888888888772    222221     123444444442   334556667788999998


Q ss_pred             hcCCCCCChhhhhhhHHHHHHhhcCC-------CHhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC--CCcc
Q 043676          159 CRGKPEPPFDQVRPALPALAQLVHSN-------DEDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGH--PSPS  229 (446)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~l~~ll~~~-------~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~--~~~~  229 (446)
                      -.          ...++.+..++...       ...+|..+++++..+....+...+        +.+.+++.+  .+.+
T Consensus       200 g~----------p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~E  261 (336)
T d1lsha1         200 GQ----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSE  261 (336)
T ss_dssp             TC----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHH
T ss_pred             CC----------HhHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCChH
Confidence            53          34678888887532       468999999999999887664443        334444444  5667


Q ss_pred             chhHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHHHHHhcC
Q 043676          230 VLTPALRTVGNIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWIISNITAG  287 (446)
Q Consensus       230 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~  287 (446)
                      +|..|+..+-.   .+|...       .+..+...+..+.+..|+......|.+++..
T Consensus       262 vRiaA~~~lm~---t~P~~~-------~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s  309 (336)
T d1lsha1         262 LRIRSCIVFFE---SKPSVA-------LVSMVAVRLRREPNLQVASFVYSQMRSLSRS  309 (336)
T ss_dssp             HHHHHHHHHHH---TCCCHH-------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHh---cCCCHH-------HHHHHHHHHHhCcHHHHHHHHHHHHHHHHhC
Confidence            88888776633   223221       3567788787666888998888889998763

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.80  E-value=0.07  Score=44.87  Aligned_cols=162  Identities=16%  Similarity=0.118  Sum_probs=110.6

Q ss_pred             CchhhHHHHhcCChHHHHHHhcc----------CchHHHHHHHHHHHHHHhcCCHHHHHHHH-HcCChHHHHHHHhcCCc
Q 043676          245 DDFQTQCIINHGAVPYLLDMLVH----------NHEEIIKKEISWIISNITAGNREQIQAVI-DAGLIRPIVNLLQNAEF  313 (446)
Q Consensus       245 ~~~~~~~~~~~~~~~~l~~~l~~----------~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~  313 (446)
                      .....+.+ ..+++..|+.+|..          ..+.....+++.+|..+.. +......++ ..+.+..+...+.+..+
T Consensus        35 ~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~  112 (343)
T d2bnxa1          35 PVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVP  112 (343)
T ss_dssp             CHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHHHHHHTCCTTSH
T ss_pred             CchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhc-cHHHHHHHHcChHHHHHHHHccCCCch
Confidence            34455555 34455566665521          1134567788899988865 455566665 46778999999998999


Q ss_pred             chHHHHHHHHHHhccCCC-----HHH------HHHHHHcCChHHHHhcccCC-CHHHHHHHHHHHHHHHHhhhhhhcccC
Q 043676          314 DTKKEAAWAISNATSGGT-----QEQ------IKHLVREGCVKPLCDLLLCS-DPEIVTVCLIGLENILKVGEAERNMGT  381 (446)
Q Consensus       314 ~v~~~a~~aL~~l~~~~~-----~~~------~~~l~~~~~i~~L~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~  381 (446)
                      .++..|...|..++....     ...      .....+.+-...+++.++.. +.+.+..++..+..++...++...+  
T Consensus       113 ~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R--  190 (343)
T d2bnxa1         113 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFR--  190 (343)
T ss_dssp             HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHH--
T ss_pred             HHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHH--
Confidence            999999999988875421     111      11222345577788877654 5788888888888888766654422  


Q ss_pred             CCCccchHHHHHHHhChHHHHHHhhcCCCHHHHH
Q 043676          382 TIGDVNQYAQFVEEAGGLEKIENLQSHDNNEIHE  415 (446)
Q Consensus       382 ~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~  415 (446)
                           ...+..|..+|..+.+..+....++++..
T Consensus       191 -----~~lR~E~~~~Gl~~il~~l~~~~~~~L~~  219 (343)
T d2bnxa1         191 -----VHIRSELMRLGLHQVLQELREIENEDMKV  219 (343)
T ss_dssp             -----HHHHHHHHHTTHHHHHHHHTTCCCHHHHH
T ss_pred             -----HHHHHHHHHCChHHHHHHHHccCChHHHH
Confidence                 23578899999999999999888888743

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.90  E-value=0.84  Score=38.01  Aligned_cols=155  Identities=11%  Similarity=0.088  Sum_probs=98.3

Q ss_pred             HHHhhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcC----C------CChHHHHHHHHHHHHHcC
Q 043676            7 LVAGVWSDD-NSLQLEATTLSRKLLSFDRNPPIEKVIQSGVVPRFVEFLMR----E------DYPQLQYEAAWVLINIAS   75 (446)
Q Consensus         7 l~~~l~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ll~~----~------~~~~~~~~a~~~L~~l~~   75 (446)
                      .+..|++.- .......+..|.--+...+....+.+ ..+++..|+.+|..    .      .....+..+++||..+..
T Consensus         7 yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn   85 (343)
T d2bnxa1           7 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN   85 (343)
T ss_dssp             HHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhc
Confidence            455666543 23334445555433444323345556 44567777776631    1      114578899999999998


Q ss_pred             CChhhHHHHH-hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC--hHHHHHH----------HHcCChHHHHHHhccc
Q 043676           76 GTSENTNVVI-DHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDS--PRCRDLV----------LSQGALIPLLAELNEH  142 (446)
Q Consensus        76 ~~~~~~~~~~-~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~--~~~~~~~----------~~~~~i~~l~~~l~~~  142 (446)
                       +......++ ...++..+...+.++.+.++..|+.+|..+|...  +.....+          .+.+-..+++..+...
T Consensus        86 -~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~  164 (343)
T d2bnxa1          86 -NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG  164 (343)
T ss_dssp             -SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT
T ss_pred             -cHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhcc
Confidence             555555554 5688999999999999999999999999998432  2222222          2334567777777555


Q ss_pred             cchhHHHHHHHHHHHhhcCCC
Q 043676          143 AKLSMLRNATRTLSNFCRGKP  163 (446)
Q Consensus       143 ~~~~~~~~a~~~L~~l~~~~~  163 (446)
                      .+.+.+..++..+-.+....+
T Consensus       165 ~~~ey~~a~m~lIN~li~~~~  185 (343)
T d2bnxa1         165 TSIALKVGCLQLINALITPAE  185 (343)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCS
T ss_pred             ccHHHHHHHHHHHHHHHcCcc
Confidence            566777777776666666543

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.84  E-value=0.088  Score=37.78  Aligned_cols=75  Identities=8%  Similarity=-0.064  Sum_probs=62.1

Q ss_pred             ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccC------CCHHHHHHHHHHHHHHHHhh
Q 043676          300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC------SDPEIVTVCLIGLENILKVG  373 (446)
Q Consensus       300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~~~~~~~~~l~~l~~~~  373 (446)
                      ++..+.+-+.++++.++..|+..|-.+..++++.....+.+.+++..|..++..      .++.|+..++..+.......
T Consensus        46 a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~f  125 (145)
T d1ujka_          46 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL  125 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHC
Confidence            455567778889999999999999999999888888888888889999988853      56789999999998876544


Q ss_pred             h
Q 043676          374 E  374 (446)
Q Consensus       374 ~  374 (446)
                      +
T Consensus       126 p  126 (145)
T d1ujka_         126 P  126 (145)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.87  E-value=0.1  Score=37.27  Aligned_cols=75  Identities=7%  Similarity=-0.108  Sum_probs=61.2

Q ss_pred             ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccC------CCHHHHHHHHHHHHHHHHhh
Q 043676          300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC------SDPEIVTVCLIGLENILKVG  373 (446)
Q Consensus       300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~~~~~~~~~l~~l~~~~  373 (446)
                      .+..+.+-++++++.++..|+..|-.+..++++.....+....++..|..++..      .++.|+..++..+..+....
T Consensus        39 a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~f  118 (143)
T d1mhqa_          39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF  118 (143)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            455566777889999999999999999998888888887877888999998863      46789999999988876544


Q ss_pred             h
Q 043676          374 E  374 (446)
Q Consensus       374 ~  374 (446)
                      +
T Consensus       119 ~  119 (143)
T d1mhqa_         119 P  119 (143)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.55  E-value=1.7  Score=30.65  Aligned_cols=72  Identities=11%  Similarity=0.094  Sum_probs=57.7

Q ss_pred             ChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhc------CCCHHHHHH
Q 043676          343 CVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQS------HDNNEIHEK  416 (446)
Q Consensus       343 ~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~------~~~~~v~~~  416 (446)
                      ++..|..-+.++++.++..++..|..++..+...            |...+...++++.+..+..      ..++.|+++
T Consensus        39 a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~------------fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~k  106 (143)
T d1mhqa_          39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEK------------FHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGR  106 (143)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH------------HHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHH------------HHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHH
Confidence            3455666678889999999999999999987554            6788888888899988875      347889999


Q ss_pred             HHHHHHHhcC
Q 043676          417 SVKIFKTYWC  426 (446)
Q Consensus       417 a~~~l~~~~~  426 (446)
                      ...++..+..
T Consensus       107 il~li~~Wa~  116 (143)
T d1mhqa_         107 VIEILFSWTV  116 (143)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999987744

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.51  E-value=0.37  Score=34.40  Aligned_cols=71  Identities=15%  Similarity=0.188  Sum_probs=56.7

Q ss_pred             hHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcC-CCHHHHHHHHHHHH
Q 043676          344 VKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSH-DNNEIHEKSVKIFK  422 (446)
Q Consensus       344 i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~-~~~~v~~~a~~~l~  422 (446)
                      +..|..-+.++++.++..|+..|..++..+...            |...+...+.++.+..+..+ .+..|+++...+++
T Consensus        44 ~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~------------f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~  111 (145)
T d1dvpa1          44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAP------------VHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQ  111 (145)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHccchH------------HHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            455666678899999999999999999987664            56777777788888777644 57789999999999


Q ss_pred             HhcC
Q 043676          423 TYWC  426 (446)
Q Consensus       423 ~~~~  426 (446)
                      .+-.
T Consensus       112 ~W~~  115 (145)
T d1dvpa1         112 TWAY  115 (145)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8744

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.15  E-value=1.2  Score=31.50  Aligned_cols=72  Identities=13%  Similarity=0.142  Sum_probs=58.4

Q ss_pred             ChHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhc------CCCHHHHHH
Q 043676          343 CVKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQS------HDNNEIHEK  416 (446)
Q Consensus       343 ~i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~------~~~~~v~~~  416 (446)
                      ++..|..=+.++++.++..++..|..++..+...            |+..+...++++.|..+..      ..+..|+++
T Consensus        46 a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~------------f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~k  113 (145)
T d1ujka_          46 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR------------FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNK  113 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHH------------HHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHH------------HHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHH
Confidence            3555666678899999999999999999886554            6788888889999888875      357789999


Q ss_pred             HHHHHHHhcC
Q 043676          417 SVKIFKTYWC  426 (446)
Q Consensus       417 a~~~l~~~~~  426 (446)
                      ...++..+..
T Consensus       114 il~li~~W~~  123 (145)
T d1ujka_         114 ILELLYSWTV  123 (145)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988754

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.04  E-value=0.18  Score=36.06  Aligned_cols=75  Identities=4%  Similarity=-0.035  Sum_probs=59.1

Q ss_pred             ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccC-CCHHHHHHHHHHHHHHHHhhh
Q 043676          300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC-SDPEIVTVCLIGLENILKVGE  374 (446)
Q Consensus       300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~~  374 (446)
                      ++..|.+-++++++.++..|+..|-.+..+++......+...+.+..|..+++. .+..|+..++..+........
T Consensus        43 a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~  118 (145)
T d1dvpa1          43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR  118 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Confidence            456677778889999999999999999988777766676666777888777755 466899999998888766443

>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.54  E-value=2.6  Score=34.61  Aligned_cols=193  Identities=11%  Similarity=0.028  Sum_probs=106.3

Q ss_pred             HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 043676           82 NVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEHAKLSMLRNATRTLSNFCRG  161 (446)
Q Consensus        82 ~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  161 (446)
                      ...++...+..|+.++.++|+.-|.....++.++-......|..+.+ .....+.+.+.......-...+++.++.+..+
T Consensus       127 ~~~id~~Fi~~Ll~lf~S~D~rER~~lk~~l~~iy~kf~~~R~~Ir~-~i~~if~~fi~e~~~~~gI~elLeil~sii~g  205 (343)
T d2jaka1         127 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIING  205 (343)
T ss_dssp             TTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHT
T ss_pred             HhhCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHhhcCCCCccHHHHHHHHHHHHHh
Confidence            33444556788899999999999999999998887666666665544 23445556664444555667788888888777


Q ss_pred             CCCC-ChhhhhhhHHHHHHhhcCCC-HhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCccchhHHHHHHH
Q 043676          162 KPEP-PFDQVRPALPALAQLVHSND-EDVLTYACWSLSYLADGTNDKIQAVIEAGVCPRLVELLGHPSPSVLTPALRTVG  239 (446)
Q Consensus       162 ~~~~-~~~~~~~~~~~l~~ll~~~~-~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~  239 (446)
                      -... ......-....++.+.+... .........++......++.....+     +..+++.=-..+..-...-+.-+.
T Consensus       206 f~~plkeeh~~f~~~vllPLhk~~~~~~y~~qL~~~v~~f~~kDp~l~~~~-----i~~llk~WP~t~~~Kev~FL~el~  280 (343)
T d2jaka1         206 FALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNELE  280 (343)
T ss_dssp             CCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHSSCSSCCTTHHHHHHHHH
T ss_pred             ccCCchHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcCchhHHHH-----HHHHHHhCCCCCchHHHHHHHHHH
Confidence            5332 23333344455555655442 3333344444444444444333311     222222221123322333444555


Q ss_pred             HhhcCCchhhHHHHhcCChHHHHHHhccCchHHHHHHHHHHH
Q 043676          240 NIVTGDDFQTQCIINHGAVPYLLDMLVHNHEEIIKKEISWII  281 (446)
Q Consensus       240 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~~~a~~~l  281 (446)
                      .+....+...-.-+...++..+...+.++ +..|.+.|+...
T Consensus       281 ~il~~~~~~~f~~~~~~lf~~la~ci~S~-h~qVAErAl~~w  321 (343)
T d2jaka1         281 EILDVIEPSEFVKIMEPLFRQLAKCVSSP-HFQVAERALYYW  321 (343)
T ss_dssp             HHHHTCCHHHHHHHHHHHHHHHHHHHTCS-SHHHHHHHHGGG
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence            55443332221122223566777777777 777777765443

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.90  E-value=1.2  Score=31.85  Aligned_cols=71  Identities=14%  Similarity=0.122  Sum_probs=56.8

Q ss_pred             hHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhhhcccCCCCccchHHHHHHHhChHHHHHHhhcC------CCHHHHHHH
Q 043676          344 VKPLCDLLLCSDPEIVTVCLIGLENILKVGEAERNMGTTIGDVNQYAQFVEEAGGLEKIENLQSH------DNNEIHEKS  417 (446)
Q Consensus       344 i~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~------~~~~v~~~a  417 (446)
                      +..|..-+.++++.++..++..|..++..+...            |+..+....+++.+..+...      .+..|+++.
T Consensus        41 ~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~------------F~~evask~Fl~~l~kli~~k~~~~~~~~~Vk~ki  108 (151)
T d1juqa_          41 VRLLAHKIQSPQEWEALQALTVLEACMKNCGRR------------FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKV  108 (151)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHH------------HHHHHhhHHHHHHHHHHHcccCCCCcccHHHHHHH
Confidence            455566667889999999999999999987665            67788888888888888753      367899999


Q ss_pred             HHHHHHhcC
Q 043676          418 VKIFKTYWC  426 (446)
Q Consensus       418 ~~~l~~~~~  426 (446)
                      ..+++.+..
T Consensus       109 l~ll~~Wa~  117 (151)
T d1juqa_         109 IELLYSWTM  117 (151)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999888754

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.16  E-value=0.71  Score=33.07  Aligned_cols=73  Identities=8%  Similarity=-0.015  Sum_probs=58.5

Q ss_pred             ChHHHHHHHhcCCcchHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHHhcccC------CCHHHHHHHHHHHHHHHHh
Q 043676          300 LIRPIVNLLQNAEFDTKKEAAWAISNATSGGTQEQIKHLVREGCVKPLCDLLLC------SDPEIVTVCLIGLENILKV  372 (446)
Q Consensus       300 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~~~~~~~~~l~~l~~~  372 (446)
                      ++..+.+-+.++++.++..|+..|-.+..++++.....+....++..|..++..      .++.|+..++..+......
T Consensus        40 a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~  118 (151)
T d1juqa_          40 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA  118 (151)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHHHHHcccCCCCcccHHHHHHHHHHHHHHHHH
Confidence            455566777888999999999999999998877777777777788888888853      3668999999988887654