Citrus Sinensis ID: 043680

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
Protein Sequence
MPSPTLLLPLLSSSPPSLFLFRLGQSHSEAVEAAYKVAIARCEHEKLKSADACLMEVIGEKNPEHFFVATQDVDLRKKLQEVPGVPLIFGLRNALLLEPPSSFQRKFVKTSEEARSCMTKSEFKKLKKSTKNILETKEIGDSSNKNEELENQKLEMQADKKTHYARKGMGVKDRPQFKRKRAKAPNPLSCKKKKNHENPSTSSGK
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHcccHHHHHHHHHHcHHccccccccccHHHHHHHHHHcccccEEEEEEccHHHHHHHcccccccEEEEEccEEEEccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHcccccHHHHHHccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccEEEEEccHHHHHHHHccccccEEEEEccEEEEccccHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccccccccHccHHHHHHHcccccccHHccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mpsptlllpllsssppslflfRLGQSHSEAVEAAYKVAIARCEHEKLKSADACLMEVigeknpehffvaTQDVDLRKklqevpgvplifglrnallleppssfqrKFVKTSEEARSCMTKSEFKKLKKSTKNILetkeigdssnkneeLENQKLEMQADKKThyarkgmgvkdrpqfkrkrakapnplsckkkknhenpstssgk
Flexible Loop (DISEMBL)
MPSPTLLLPLLSSSPPSLFLFRLGQSHSEAVEAAYKVAIARCEHEKLKSADACLMEVIGEKNPEHFFVATQDVDLRKKLQEVPGVPLIFGLRNALLLEPPSSFQRKFVKtseearscmtksefkklkkstkniletkeigdssnkneelenQKLEMqadkkthyarkgmgvkdrpqfkrkrakapnplsckkkknhenpstssgk
Low Complexity Region (SEG)
MpsptlllpllsssppslflfRLGQSHSEAVEAAYKVAIARCEHEKLKSADACLMEVIGEKNPEHFFVATQDVDLRKKLQEVPGVPLIFGLRNALLLEPPSSFQRKFVKTSEEARSCMtksefkklkkstkNILETKEIGDSSnkneelenqkleMQADKKTHYARKGMGVKDRPQFKRKRAKAPNPLSCKKKKNHENPSTSSGK
Disordered region (IsUnstruct)
*****************LFLFRLGQSHSEAVEAAYKVAIARCEHEKLKSADACLMEVIGEKNPEHFFVATQDVDLRKKLQEVPGVPLIFGLRNALLLE***********************************************************************************************************
Disordered Region (DISOPRED)
****TLLLPLLSSSPPSLFLFRLGQSHSEAVEAAYKVAIARCEHEKLKSADACLMEVIGEKNPEHFFVATQDVDLRKKLQEVPGVPLIFGLRNALLL************************************************************************************************************
Disordered Region (DISEMBL)
MPSPTLLLPLLSSSPPSLFLFRLGQSHSEAVEAAYKVAIARCEHEKLKSADACLMEVIGEKNPEHFFVATQDVDLRKKLQEVPGVPLIFGLRNALLLEPPSSFQR***********************STKNILETKEIGDSSNKNEELENQKLEMQADKKTHYARKGMGVKD************NPLSC***************
Disordered Region (DISPRO)
MPSPTLLLPLLSSSPPSLFLFRLGQSHSEAVEAAYKVAIARCEHEKLKSADACLMEVIGEKNPEHFFVATQDVDLRKKLQEVPGVPLIFGLRNALLLEPPSSFQRKFVKTSEEARSCMT****K*********************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPSPTLLLPLLSSSPPSLFLFRLGQSHSEAVEAAYKVAIARCEHEKLKSADACLMEVIGEKNPEHFFVATQDVDLRKKLQEVPGVPLIFGLRNALLLEPPSSFQRKFVKTSEEARSCMTKSEFKKLKKSTKNILETKExxxxxxxxxxxxxxxxxxxxxxxxxxxxKGMGVKDRPQFKRKRAKAPNPLSCKKKKNHENPSTSSGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	205	2.2.26 [Sep-21-2011]
Q9BRU9	249	rRNA-processing protein U	yes	no	0.717	0.590	0.324	2e-13
Q9CX11	249	rRNA-processing protein U	yes	no	0.517	0.425	0.376	1e-11
Q08DU1	248	rRNA-processing protein U	yes	no	0.512	0.423	0.351	2e-10
Q12339	254	rRNA-processing protein U	yes	no	0.570	0.460	0.356	2e-09
O74862	260	rRNA-processing protein u	yes	no	0.760	0.6	0.327	1e-08

>sp|Q9BRU9|UTP23_HUMAN rRNA-processing protein UTP23 homolog OS=Homo sapiens GN=UTP23 PE=1 SV=2

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 85/182 (46%), Gaps = 35/182 (19%)

Query: 23  LGQSHSEAVEAAYKVAIARCEHEK-LKSADACLMEVIGEKNPEHFFVATQDVDLRKKLQE 81
           LG+    A   A K  +  C H K   S   CL+ ++ E NP H+FVATQD +L  K+++
Sbjct: 72  LGKDLYGAKLIAQKCQVRNCPHFKNAVSGSECLLSMVEEGNPHHYFVATQDQNLSVKVKK 131

Query: 82  VPGVPLIFGLRNALLLEPPSSFQRKFVKTSEEARSCMTKSEFKKLKKSTKNILETKEIGD 141
            PGVPL+F ++N ++L+ PS     FVK  E  +                          
Sbjct: 132 KPGVPLMFIIQNTMVLDKPSPKTIAFVKAVESGQLV------------------------ 167

Query: 142 SSNKNEELENQKLEMQADKKTHYARKGMGVKDRPQFKRKRAKAPNPLSCKKKKNHENPST 201
           S ++ E +++ K E    K T  +R+          KRK+   PNPLSC KKK  + P T
Sbjct: 168 SVHEKESIKHLKEEQGLVKNTEQSRRK---------KRKKISGPNPLSCLKKKK-KAPDT 217

Query: 202 SS 203
            S
Sbjct: 218 QS 219

Involved in rRNA-processing and ribosome biogenesis.
Homo sapiens (taxid: 9606)

>sp|Q9CX11|UTP23_MOUSE rRNA-processing protein UTP23 homolog OS=Mus musculus GN=Utp23 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 60/109 (55%), Gaps = 3/109 (2%)

Query: 23  LGQSHSEAVEAAYKVAIARCEHEKL-KSADACLMEVIGEKNPEHFFVATQDVDLRKKLQE 81
           LG+    A   A K  +  C H K   S   CL+ ++ E NP H+FVATQD +L  K++ 
Sbjct: 72  LGKELYGAKLIAQKCQVRNCPHFKSPVSGSECLLSMVDEGNPHHYFVATQDQNLSVKVKR 131

Query: 82  VPGVPLIFGLRNALLLEPPSSFQRKFVKTSEEAR--SCMTKSEFKKLKK 128
            PG+PL+F ++N ++L+ PS     FVK  E  +  S   K   K+LK+
Sbjct: 132 TPGIPLMFIIQNTIVLDKPSPRTVAFVKAVEAGQLVSVHEKQSIKQLKE 180

Involved in rRNA-processing and ribosome biogenesis.

Mus musculus (taxid: 10090)

>sp|Q08DU1|UTP23_BOVIN rRNA-processing protein UTP23 homolog OS=Bos taurus GN=UTP23 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 60/108 (55%), Gaps = 3/108 (2%)

Query: 23  LGQSHSEAVEAAYKVAIARCEHEK-LKSADACLMEVIGEKNPEHFFVATQDVDLRKKLQE 81
           LG+    A   A K  +  C H K   S   CL+ ++ + NP H+F+ATQD +L  K+++
Sbjct: 72  LGKDLYGAKLIAQKCQVRNCPHFKNAVSGSECLLSMVEDGNPHHYFLATQDQNLSMKVKK 131

Query: 82  VPGVPLIFGLRNALLLEPPSSFQRKFVKTSEEAR--SCMTKSEFKKLK 127
            PG+PL+F ++N ++L+ PS     FVK  E  +  S   K   ++LK
Sbjct: 132 KPGIPLMFIIQNTIVLDKPSPKTIAFVKAVESGQLVSVHEKQSIRQLK 179

Involved in rRNA-processing and ribosome biogenesis.

Bos taurus (taxid: 9913)

>sp|Q12339|UTP23_YEAST rRNA-processing protein UTP23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP23 PE=1 SV=1

 Score = 62.4 bits (150), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 68/129 (52%), Gaps = 12/129 (9%)

Query: 30  AVEAAYKVAIARCEH--EKLKSADACLMEV--IGEKNPEHFFVATQDVDLRKKLQEVPGV 85
           A+  A +    RC H  +  KS   C+  V  I   N   + VA+QD+DLR+KL+ VPGV
Sbjct: 77  AINLAKQFERRRCNHSFKDPKSPAECIESVVNISGANKHRYVVASQDIDLRRKLRTVPGV 136

Query: 86  PLIFGLRNALLLEPPSSFQRKFVKTSEEARSCMTKSEFKKLKKSTKNILETKEIGDSSNK 145
           PLI   R+ +++EP S+   K  K +EE +       +K L  +  NI + +E GD S K
Sbjct: 137 PLIHLTRSVMVMEPLSTASAKASKITEEQKL------YKGL--NDPNIEKLQESGDGSGK 188

Query: 146 NEELENQKL 154
               + +KL
Sbjct: 189 ESITKKRKL 197

Involved in rRNA-processing and ribosome biogenesis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O74862|UTP23_SCHPO rRNA-processing protein utp23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=utp23 PE=3 SV=1

 Score = 59.7 bits (143), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 83/183 (45%), Gaps = 27/183 (14%)

Query: 25  QSHSEAVEAAYKVAIA------RCEH-EKLKSADACLMEV--IGEKNPEHFFVATQDVDL 75
           Q +S++ E   ++ IA      RC H ++  S   C+  V  I  +N   + VATQD +L
Sbjct: 68  QLYSKSDELKQEIRIAKSFERRRCGHIDEALSPSECIQSVVNINGRNKHRYVVATQDPEL 127

Query: 76  RKKLQEVPGVPLIFGLRNALLLEPPSSFQRKFVKTSEEARSCMTKSEFKKLKKSTKNILE 135
           R+ L+ VPGVPLI+  R+ ++LEP S          E  +  M+K E  KL  S K    
Sbjct: 128 RQALRSVPGVPLIYMKRSVVILEPASRATLLEKHNKESVQMGMSKEE--KLLLSGKKRSA 185

Query: 136 TKEIGDSSNKNEELENQKLEMQADKKTHYARKGMGVKDRPQFKRKRAKAPNPLSCKKK-- 193
            +   D  +  E  +    E  A K                 KRK  K PNPLS KK+  
Sbjct: 186 NELAIDDQDTKESTDLAGTEDSAPKANK--------------KRKGPKGPNPLSIKKRSS 231

Query: 194 KNH 196
           KNH
Sbjct: 232 KNH 234

Involved in rRNA-processing and ribosome biogenesis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
224132294	251	predicted protein [Populus trichocarpa]	0.887	0.725	0.597	8e-58
356501304	285	PREDICTED: rRNA-processing protein UTP23	0.858	0.617	0.636	3e-57
225451633	284	PREDICTED: rRNA-processing protein UTP23	0.892	0.644	0.622	1e-56
356554407	285	PREDICTED: rRNA-processing protein UTP23	0.858	0.617	0.625	3e-56
147802219	621	hypothetical protein VITISV_029908 [Viti	0.892	0.294	0.518	7e-52
357454221	289	rRNA-processing protein UTP23-like prote	0.951	0.674	0.535	1e-51
357490851	289	rRNA-processing protein UTP23-like prote	0.951	0.674	0.531	3e-51
255578672	290	rRNA-processing protein UTP23, putative	0.878	0.620	0.607	1e-50
449452036	280	PREDICTED: rRNA-processing protein UTP23	0.858	0.628	0.551	3e-46
449486590	399	PREDICTED: LOW QUALITY PROTEIN: rRNA-pro	0.858	0.441	0.545	5e-46

>gi|224132294|ref|XP_002328233.1| predicted protein [Populus trichocarpa] gi|222837748|gb|EEE76113.1| predicted protein [Populus trichocarpa]

 Score =  228 bits (582), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 110/184 (59%), Positives = 146/184 (79%), Gaps = 2/184 (1%)

Query: 20  LFRLGQSHSEAVEAAYKVAIARCEHEKLKSADACLMEVIGEKNPEHFFVATQDVDLRKKL 79
           L RLG+S++E+++AA  + IARC+HE+ K+A+ C++E+IGE NP+HF+V TQD D+RKK 
Sbjct: 70  LKRLGKSYTESLQAANTLMIARCDHEQNKNAEGCIVEIIGENNPDHFYVGTQDTDMRKKF 129

Query: 80  QEVPGVPLIFGLRNALLLEPPSSFQRKFVKTSEEARSCMTKSEFKKLKKSTKNILETKEI 139
           QEVPGVPLIFGLRNAL L+PPS+FQR+F K SEE RS MT+ E   LKK TK+++E  EI
Sbjct: 130 QEVPGVPLIFGLRNALFLQPPSAFQRQFAKNSEEERSHMTEKEVALLKKRTKDLVENWEI 189

Query: 140 GDSSNKNEELENQKLEMQADKKTHYARKGMGVKDRPQFKRKRAKAPNPLSCKKKKNHENP 199
           GDSS++N   E++ LEMQ  K  + +RKGM VKDRPQFKR +AK PNPLS +KKK+ +N 
Sbjct: 190 GDSSDENGGPEDENLEMQPQK--YSSRKGMKVKDRPQFKRNKAKGPNPLSVQKKKSRQNT 247

Query: 200 STSS 203
           ++ S
Sbjct: 248 NSMS 251

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501304|ref|XP_003519465.1| PREDICTED: rRNA-processing protein UTP23 homolog [Glycine max]

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 114/179 (63%), Positives = 139/179 (77%), Gaps = 3/179 (1%)

Query: 20  LFRLGQSHSEAVEAAYKVAIARCEHEKLKSADACLMEVIGEKNPEHFFVATQDVDLRKKL 79
           L RLG S+SEA+EAA+K+ +ARCEHEK KSADAC+MEV+G KN EHFFVA+QD DLRKKL
Sbjct: 70  LNRLGSSYSEALEAAHKLIVARCEHEKCKSADACIMEVVGGKNSEHFFVASQDTDLRKKL 129

Query: 80  QEVPGVPLIFGLRNALLLEPPSSFQRKFVKTSEEARSCMTKSEFKKLKKSTKNILETKEI 139
           QEVPGVPLIFGLRNAL LE PS+FQR++VKTSEE R  MT+ E++  K    N L  +E 
Sbjct: 130 QEVPGVPLIFGLRNALFLESPSAFQRQYVKTSEEGRLHMTQKEYQIFKDRVMNRLTGEEA 189

Query: 140 GDSSNK---NEELENQKLEMQADKKTHYARKGMGVKDRPQFKRKRAKAPNPLSCKKKKN 195
             S ++   N++ E+Q + +QA KK   AR  M +KD+PQFKRKRAK PNPLSCKKKK+
Sbjct: 190 NHSISQIMENDDSEDQTINVQAVKKGITARNHMEIKDKPQFKRKRAKGPNPLSCKKKKS 248

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451633|ref|XP_002276803.1| PREDICTED: rRNA-processing protein UTP23 homolog [Vitis vinifera] gi|296082256|emb|CBI21261.3| unnamed protein product [Vitis vinifera]

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 114/183 (62%), Positives = 141/183 (77%)

Query: 23  LGQSHSEAVEAAYKVAIARCEHEKLKSADACLMEVIGEKNPEHFFVATQDVDLRKKLQEV 82
           LG S+SE+++AA K+  ARC+HE+ KSA+AC +E+IGE NPEHFFVATQD DLRKK QE+
Sbjct: 73  LGDSYSESLKAAGKLIAARCDHERRKSAEACFVEIIGENNPEHFFVATQDTDLRKKFQEI 132

Query: 83  PGVPLIFGLRNALLLEPPSSFQRKFVKTSEEARSCMTKSEFKKLKKSTKNILETKEIGDS 142
           PGVP+IFGLRNALLLEPPS  QR+FVK+SEE R  MT+ E K L K  KN L +KE  DS
Sbjct: 133 PGVPVIFGLRNALLLEPPSVSQRQFVKSSEEERLHMTELEHKLLSKRQKNRLTSKETKDS 192

Query: 143 SNKNEELENQKLEMQADKKTHYARKGMGVKDRPQFKRKRAKAPNPLSCKKKKNHENPSTS 202
           S++NE LE+Q L +QA    + A++ M VKDR QFKR +AK PNPLSCKKKK+   P+ +
Sbjct: 193 SDENEALEDQNLGLQAATNENNAKRRMVVKDRVQFKRNKAKGPNPLSCKKKKSQRQPNPA 252

Query: 203 SGK 205
           S K
Sbjct: 253 SEK 255

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554407|ref|XP_003545538.1| PREDICTED: rRNA-processing protein UTP23 homolog [Glycine max]

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 112/179 (62%), Positives = 138/179 (77%), Gaps = 3/179 (1%)

Query: 20  LFRLGQSHSEAVEAAYKVAIARCEHEKLKSADACLMEVIGEKNPEHFFVATQDVDLRKKL 79
           L RLG S+SEA+EAA+K+ +ARCEHEK KSADAC+MEV+GEKN EHFFVA+QD DLRK+L
Sbjct: 70  LKRLGSSYSEALEAAHKLIVARCEHEKCKSADACIMEVVGEKNSEHFFVASQDTDLRKQL 129

Query: 80  QEVPGVPLIFGLRNALLLEPPSSFQRKFVKTSEEARSCMTKSEFKKLKKSTKNILETKEI 139
           QEVPGVPLIFGLRNAL LE PS+FQR++VKTSEE R  MT+ E++  K    N L  +E 
Sbjct: 130 QEVPGVPLIFGLRNALFLESPSAFQRQYVKTSEEGRLHMTQKEYQIFKDRVMNRLTGEEA 189

Query: 140 GDSSNKNEEL---ENQKLEMQADKKTHYARKGMGVKDRPQFKRKRAKAPNPLSCKKKKN 195
            +S  +  E+   E+Q + +QA +K   +R  M +KD PQFKRKRAK PNPLSCKKKK+
Sbjct: 190 NNSITEIMEIEDSEDQTINVQAVEKGITSRNRMEIKDEPQFKRKRAKGPNPLSCKKKKS 248

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802219|emb|CAN68267.1| hypothetical protein VITISV_029908 [Vitis vinifera]

 Score =  209 bits (531), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 114/220 (51%), Positives = 141/220 (64%), Gaps = 37/220 (16%)

Query: 23  LGQSHSEAVEAAYKVAIARCEHEKLKSADACLMEVIGEKNPEHFFVATQDVDLRKKLQEV 82
           LG S+SE+++AA K+  ARC+HE+ KSA+AC +E+IGE NPEHFFVATQD DLRKK QE+
Sbjct: 321 LGDSYSESLKAAGKLIAARCDHERRKSAEACFVEIIGENNPEHFFVATQDTDLRKKFQEI 380

Query: 83  PGVPLIFGLRNALLLEPPSSFQRKFVKTSEEARSCMTKSEFKKLKKSTKNILETKEIGDS 142
           PGVP+IFGLRNALLLEPPS  QR+FVK+SEE R  MT+ E K L K  KN L +KE  DS
Sbjct: 381 PGVPVIFGLRNALLLEPPSVSQRQFVKSSEEERLHMTELEHKLLSKRXKNRLTSKETKDS 440

Query: 143 SNKNEELENQKLEMQADKKTHYARKGMGVKDRPQFKRKRAK------------------- 183
           S++NE LE+Q L +QA    + A++ M VKDR QFKR +AK                   
Sbjct: 441 SDENEALEDQNLGLQAATNENNAKRRMVVKDRVQFKRNKAKLSLKVRLPSSVLWIWDDLL 500

Query: 184 ------------------APNPLSCKKKKNHENPSTSSGK 205
                              PNPLSCKKKK+   P+ +S K
Sbjct: 501 WMKLSQQFADHLPLMSTTGPNPLSCKKKKSQRQPNPASEK 540

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454221|ref|XP_003597391.1| rRNA-processing protein UTP23-like protein [Medicago truncatula] gi|87241272|gb|ABD33130.1| Protein of unknown function DUF652 [Medicago truncatula] gi|355486439|gb|AES67642.1| rRNA-processing protein UTP23-like protein [Medicago truncatula]

 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 112/209 (53%), Positives = 145/209 (69%), Gaps = 14/209 (6%)

Query: 2   PSPTLLLPLLSSSPPSLF--------LFRLGQSHSEAVEAAYKVAIARCEHEKLKSADAC 53
           P+ T L  +LS++   L+        L RLG+S+SEA++AA  + IARCEH+K   AD+C
Sbjct: 49  PADTALANILSATVK-LYTTRCVLAELKRLGKSYSEALDAANNLIIARCEHDKCARADSC 107

Query: 54  LMEVIGEKNPEHFFVATQDVDLRKKLQEVPGVPLIFGLRNALLLEPPSSFQRKFVKTSEE 113
           +MEV+GE N EHFFVA+QD DLRKKL+EVPGVPLIFGLRNAL LE PS+FQ+++VKTSEE
Sbjct: 108 IMEVVGENNSEHFFVASQDTDLRKKLEEVPGVPLIFGLRNALFLESPSAFQKEYVKTSEE 167

Query: 114 ARSCMTKSEFKKLKKSTKNILETKEIGDSSN----KNEELENQKLEMQADKKTHYARKGM 169
            R  MT  E++  K      L   E  D+SN    +N +L +     QA K++  +R   
Sbjct: 168 RRLHMTDKEYQIFKDRAMKRLADGE-ADNSNAEIVENNDLGDSIASAQAIKRSIISRNHN 226

Query: 170 GVKDRPQFKRKRAKAPNPLSCKKKKNHEN 198
           GVKD+PQFKR++AK PNPLSCKKKK+ EN
Sbjct: 227 GVKDKPQFKRRKAKGPNPLSCKKKKSREN 255

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357490851|ref|XP_003615713.1| rRNA-processing protein UTP23-like protein [Medicago truncatula] gi|355517048|gb|AES98671.1| rRNA-processing protein UTP23-like protein [Medicago truncatula]

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 111/209 (53%), Positives = 145/209 (69%), Gaps = 14/209 (6%)

Query: 2   PSPTLLLPLLSSSPPSLF--------LFRLGQSHSEAVEAAYKVAIARCEHEKLKSADAC 53
           P+ T L  +LS++   L+        L RLG+S+SEA++AA  + IARCEH+K   AD+C
Sbjct: 49  PADTALANILSATV-KLYTTRCVVAELKRLGKSYSEALDAANDLIIARCEHDKCVRADSC 107

Query: 54  LMEVIGEKNPEHFFVATQDVDLRKKLQEVPGVPLIFGLRNALLLEPPSSFQRKFVKTSEE 113
           +MEV+GE N EHFFVA+QD DLRKKL+EVPGVPLIFGLRNAL LE PS+FQ+++VKTSEE
Sbjct: 108 IMEVVGENNSEHFFVASQDTDLRKKLEEVPGVPLIFGLRNALFLESPSAFQKEYVKTSEE 167

Query: 114 ARSCMTKSEFKKLKKSTKNILETKEIGDSSN----KNEELENQKLEMQADKKTHYARKGM 169
            R  MT  E++  K      L   E  D+SN    +N +L +     QA K++  +R   
Sbjct: 168 RRLHMTDKEYQIFKDRAMKKLADGE-ADNSNAEIVENNDLGDSIASAQAIKRSIISRNQN 226

Query: 170 GVKDRPQFKRKRAKAPNPLSCKKKKNHEN 198
           GV+D+PQFKR++AK PNPLSCKKKK+ EN
Sbjct: 227 GVRDKPQFKRRKAKGPNPLSCKKKKSREN 255

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578672|ref|XP_002530196.1| rRNA-processing protein UTP23, putative [Ricinus communis] gi|223530289|gb|EEF32186.1| rRNA-processing protein UTP23, putative [Ricinus communis]

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 113/186 (60%), Positives = 136/186 (73%), Gaps = 6/186 (3%)

Query: 20  LFRLGQSHSEAVEAAYKVAIARCEHEKLKSADACLMEVIGEKNPEHFFVATQDVDLRKKL 79
           L RLG+S+SE+++AA+ +  ARC+HEK+KSA+AC++EVIG+ NPEHFFVATQD DLRKK 
Sbjct: 70  LKRLGKSYSESLQAAHLLMTARCDHEKVKSAEACILEVIGQNNPEHFFVATQDFDLRKKF 129

Query: 80  QEVPGVPLIFGLRNALLLEPPSSFQRKFVKTSEEARSCMTKSEFKKLKKSTKNILETKEI 139
           +EVP VPLIFGLRN+L LEPPS+FQ  FVK SEE R   T+ E K LK +TK+IL     
Sbjct: 130 REVPAVPLIFGLRNSLHLEPPSAFQHAFVKASEEERLHATELEQKMLKTTTKSIL----- 184

Query: 140 GDSSNKNEELENQKLEMQADKKTHYARKGMGVKDRPQFKRKRAKAPNPLSCKKKKNHENP 199
                + E  ++Q LEMQ  +K H AR    VKDRPQFKRKRAK PNPLSCKKKK   NP
Sbjct: 185 -GHEGEIEGPKDQNLEMQPVEKKHSARNKTDVKDRPQFKRKRAKGPNPLSCKKKKKDGNP 243

Query: 200 STSSGK 205
             S  K
Sbjct: 244 KPSLDK 249

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452036|ref|XP_004143766.1| PREDICTED: rRNA-processing protein UTP23 homolog [Cucumis sativus]

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 102/185 (55%), Positives = 134/185 (72%), Gaps = 9/185 (4%)

Query: 23  LGQSHSEAVEAAYKVAIARCEHEKLKSADACLMEVIGEKNPEHFFVATQDVDLRKKLQEV 82
           LGQS+S A EAA ++  ARC+HEK KSA+AC+++VIGE NPEHFFVATQD +LRK+LQ++
Sbjct: 73  LGQSYSGAFEAASQLFTARCDHEKRKSAEACILDVIGESNPEHFFVATQDTNLRKQLQQI 132

Query: 83  PGVPLIFGLRNALLLEPPSSFQRKFVKTSEEARSCMTKSEFKKLKKSTKNILETKEIGDS 142
           PGVPLIFGLRNAL +E PS  QR+FVK+ EE R  +++ E   LKK TK ++E     + 
Sbjct: 133 PGVPLIFGLRNALFMEQPSDVQRQFVKSLEEKRMHVSEVERDLLKKKTKYVVE----AEK 188

Query: 143 SNKNEELENQKLEMQADKKTHYARKGM--GVKDRPQFKRKRAKAPNPLSCKKKKNHENPS 200
           +N++E+LE+Q L+    KK    +K +   +KDRPQFKR +AK PNPLSC KKK   +P 
Sbjct: 189 TNEDEDLEDQNLDTLVLKK---KKKNIPSNLKDRPQFKRNKAKGPNPLSCLKKKVKPSPH 245

Query: 201 TSSGK 205
             S K
Sbjct: 246 PVSEK 250

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449486590|ref|XP_004157341.1| PREDICTED: LOW QUALITY PROTEIN: rRNA-processing protein UTP23 homolog [Cucumis sativus]

 Score =  189 bits (480), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 101/185 (54%), Positives = 133/185 (71%), Gaps = 9/185 (4%)

Query: 23  LGQSHSEAVEAAYKVAIARCEHEKLKSADACLMEVIGEKNPEHFFVATQDVDLRKKLQEV 82
           LGQS+S A EAA ++  ARC+HEK KSA+AC+++VIGE NPEHFFVATQD +LRK+LQ++
Sbjct: 192 LGQSYSGAFEAASQLFTARCDHEKRKSAEACILDVIGESNPEHFFVATQDTNLRKQLQQI 251

Query: 83  PGVPLIFGLRNALLLEPPSSFQRKFVKTSEEARSCMTKSEFKKLKKSTKNILETKEIGDS 142
           PGVPLIFGLRNAL +E PS  QR+FVK+ EE R  +++ E   LK  TK ++E     + 
Sbjct: 252 PGVPLIFGLRNALFMEQPSDVQRQFVKSLEEKRMHVSEVERDLLKXKTKYVVE----AEK 307

Query: 143 SNKNEELENQKLEMQADKKTHYARKGM--GVKDRPQFKRKRAKAPNPLSCKKKKNHENPS 200
           +N++E+LE+Q L+    KK    +K +   +KDRPQFKR +AK PNPLSC KKK   +P 
Sbjct: 308 TNEDEDLEDQNLDTLVLKK---KKKNIPSNLKDRPQFKRNKAKGPNPLSCLKKKVKPSPH 364

Query: 201 TSSGK 205
             S K
Sbjct: 365 PVSEK 369

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
TAIR|locus:2062303	281	MEE21 "AT2G34570" [Arabidopsis	0.839	0.612	0.461	1.1e-34
UNIPROTKB|Q08DU1	248	UTP23 "rRNA-processing protein	0.453	0.375	0.361	6.4e-19
UNIPROTKB|Q9BRU9	249	UTP23 "rRNA-processing protein	0.453	0.373	0.393	8.1e-19
MGI|MGI:1925831	249	Utp23 "UTP23, small subunit (S	0.439	0.361	0.395	1.7e-18
ZFIN|ZDB-GENE-050417-353	257	utp23 "UTP23, small subunit (S	0.346	0.276	0.402	2.5e-16
CGD|CAL0001138	269	orf19.3724 [Candida albicans (	0.380	0.289	0.325	5.5e-14
UNIPROTKB|Q59V16	269	CaO19.3724 "Putative uncharact	0.380	0.289	0.325	5.5e-14
SGD|S000005530	254	UTP23 "Component of the small	0.814	0.657	0.281	5.4e-10
POMBASE|SPCC18.12c	260	utp23 "rRNA processing protein	0.751	0.592	0.308	1.7e-09
FB|FBgn0031361	244	CG17652 [Drosophila melanogast	0.409	0.344	0.272	2.5e-05

TAIR|locus:2062303 MEE21 "AT2G34570" [Arabidopsis thaliana (taxid:3702)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 84/182 (46%), Positives = 107/182 (58%)

Query:    22 RLGQSHSEAVEAAYKVAIARCEHEKLKSADACLMEVIGEKNPEHFFVATQDVDLRKKLQE 81
             +LG+  +E++EAA  +  A CEHE+ K+AD CL EVIG +N EHFF+ TQD + R+KLQ+
Sbjct:    72 KLGKDFAESLEAAQTLNTATCEHEEAKTADECLSEVIGVQNTEHFFLGTQDAEFRRKLQQ 131

Query:    82 VPGVPLIFGLRNALLLEPPSSFQRKFVKTSEEARSCMXXXXXXXXXXXXXNILETKEIGD 141
                VPL+FGLRN LL++ PS FQR+  K SE  R  M              +  T +I  
Sbjct:   132 ESIVPLVFGLRNILLIDQPSDFQRQSAKDSENKRLTMTDTEKKLL------VKRTAKIIA 185

Query:   142 SSXXXXXXXXXXXXMQADKKTHYARKGMGVKDRPQFKRKRAKAPNPLSCKKKKNHENPST 201
             S+            M     T   + G+GVKDRPQFKR RAK PNPLSC KKK  ENP +
Sbjct:   186 SNRKEATIANEEWGMPRVVST---KNGLGVKDRPQFKRNRAKGPNPLSCMKKKK-ENPQS 241

Query:   202 SS 203
              S
Sbjct:   242 KS 243

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

UNIPROTKB|Q08DU1 UTP23 "rRNA-processing protein UTP23 homolog" [Bos taurus (taxid:9913)]

 Score = 162 (62.1 bits), Expect = 6.4e-19, Sum P(2) = 6.4e-19
 Identities = 34/94 (36%), Positives = 54/94 (57%)

Query:    23 LGQSHSEAVEAAYKVAIARCEHEK-LKSADACLMEVIGEKNPEHFFVATQDVDLRKKLQE 81
             LG+    A   A K  +  C H K   S   CL+ ++ + NP H+F+ATQD +L  K+++
Sbjct:    72 LGKDLYGAKLIAQKCQVRNCPHFKNAVSGSECLLSMVEDGNPHHYFLATQDQNLSMKVKK 131

Query:    82 VPGVPLIFGLRNALLLEPPSSFQRKFVKTSEEAR 115
              PG+PL+F ++N ++L+ PS     FVK  E  +
Sbjct:   132 KPGIPLMFIIQNTIVLDKPSPKTIAFVKAVESGQ 165

GO:0005730 "nucleolus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

UNIPROTKB|Q9BRU9 UTP23 "rRNA-processing protein UTP23 homolog" [Homo sapiens (taxid:9606)]

 Score = 168 (64.2 bits), Expect = 8.1e-19, Sum P(2) = 8.1e-19
 Identities = 37/94 (39%), Positives = 54/94 (57%)

Query:    23 LGQSHSEAVEAAYKVAIARCEHEK-LKSADACLMEVIGEKNPEHFFVATQDVDLRKKLQE 81
             LG+    A   A K  +  C H K   S   CL+ ++ E NP H+FVATQD +L  K+++
Sbjct:    72 LGKDLYGAKLIAQKCQVRNCPHFKNAVSGSECLLSMVEEGNPHHYFVATQDQNLSVKVKK 131

Query:    82 VPGVPLIFGLRNALLLEPPSSFQRKFVKTSEEAR 115
              PGVPL+F ++N ++L+ PS     FVK  E  +
Sbjct:   132 KPGVPLMFIIQNTMVLDKPSPKTIAFVKAVESGQ 165

GO:0006364 "rRNA processing" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

MGI|MGI:1925831 Utp23 "UTP23, small subunit (SSU) processome component, homolog (yeast)" [Mus musculus (taxid:10090)]

 Score = 168 (64.2 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
 Identities = 36/91 (39%), Positives = 52/91 (57%)

Query:    23 LGQSHSEAVEAAYKVAIARCEHEKLK-SADACLMEVIGEKNPEHFFVATQDVDLRKKLQE 81
             LG+    A   A K  +  C H K   S   CL+ ++ E NP H+FVATQD +L  K++ 
Sbjct:    72 LGKELYGAKLIAQKCQVRNCPHFKSPVSGSECLLSMVDEGNPHHYFVATQDQNLSVKVKR 131

Query:    82 VPGVPLIFGLRNALLLEPPSSFQRKFVKTSE 112
              PG+PL+F ++N ++L+ PS     FVK  E
Sbjct:   132 TPGIPLMFIIQNTIVLDKPSPRTVAFVKAVE 162

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0042254 "ribosome biogenesis" evidence=IEA

ZFIN|ZDB-GENE-050417-353 utp23 "UTP23, small subunit (SSU) processome component, homolog (yeast)" [Danio rerio (taxid:7955)]

 Score = 154 (59.3 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
 Identities = 29/72 (40%), Positives = 46/72 (63%)

Query:    39 IARCEHEKLK-SADACLMEVIGEKNPEHFFVATQDVDLRKKLQEVPGVPLIFGLRNALLL 97
             I +C+H K    A  CL+ ++ E NP H+F+ATQD  L   L+++PGVPL++ + N ++L
Sbjct:    88 IRKCKHMKDPVPASECLLSMLAETNPHHYFIATQDQQLTTALKKIPGVPLLYIILNTMVL 147

Query:    98 EPPSSFQRKFVK 109
             + PS    K V+
Sbjct:   148 DKPSERTLKHVE 159

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

CGD|CAL0001138 orf19.3724 [Candida albicans (taxid:5476)]

 Score = 137 (53.3 bits), Expect = 5.5e-14, Sum P(2) = 5.5e-14
 Identities = 26/80 (32%), Positives = 46/80 (57%)

Query:    30 AVEAAYKVAIARCEHEKLKSADACLMEVIGEK--NPEHFFVATQDVDLRKKLQEVPGVPL 87
             A++ A      +C H +      C+  ++  K  N   + VA+QD+ LRKKL+++PGVPL
Sbjct:    77 AIDIAKSFERRKCNHREAIDPSQCIESIVNIKGQNKHRYIVASQDLQLRKKLRKIPGVPL 136

Query:    88 IFGLRNALLLEPPSSFQRKF 107
             I+  R+ +++EP S    ++
Sbjct:   137 IYMNRSVMVMEPISDVSNQY 156

GO:0003674 "molecular_function" evidence=ND

GO:0032040 "small-subunit processome" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

UNIPROTKB|Q59V16 CaO19.3724 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 137 (53.3 bits), Expect = 5.5e-14, Sum P(2) = 5.5e-14
 Identities = 26/80 (32%), Positives = 46/80 (57%)

Query:    30 AVEAAYKVAIARCEHEKLKSADACLMEVIGEK--NPEHFFVATQDVDLRKKLQEVPGVPL 87
             A++ A      +C H +      C+  ++  K  N   + VA+QD+ LRKKL+++PGVPL
Sbjct:    77 AIDIAKSFERRKCNHREAIDPSQCIESIVNIKGQNKHRYIVASQDLQLRKKLRKIPGVPL 136

Query:    88 IFGLRNALLLEPPSSFQRKF 107
             I+  R+ +++EP S    ++
Sbjct:   137 IYMNRSVMVMEPISDVSNQY 156

GO:0003674 "molecular_function" evidence=ND

SGD|S000005530 UTP23 "Component of the small subunit processome, involved in 40S ribosomal" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 145 (56.1 bits), Expect = 5.4e-10, P = 5.4e-10
 Identities = 51/181 (28%), Positives = 77/181 (42%)

Query:    30 AVEAAYKVAIARCEH--EKLKSADACLMEV--IGEKNPEHFFVATQDVDLRKKLQEVPGV 85
             A+  A +    RC H  +  KS   C+  V  I   N   + VA+QD+DLR+KL+ VPGV
Sbjct:    77 AINLAKQFERRRCNHSFKDPKSPAECIESVVNISGANKHRYVVASQDIDLRRKLRTVPGV 136

Query:    86 PLIFGLRNALLLEPPSSFQRKFVKTSEEARSCMXXXXXXXXXXXXXNILETKEIGDSSXX 145
             PLI   R+ +++EP S+   K  K +EE +                NI + +E GD S  
Sbjct:   137 PLIHLTRSVMVMEPLSTASAKASKITEEQK--------LYKGLNDPNIEKLQESGDGSGK 188

Query:   146 XXXXXXXXXXMQADKKTHYARKGM--GVKDRPQFKRKRAKAPNPLSCKKKKNHENPSTSS 203
                        +A       +K       D  + K   +K       +K K++ N   S+
Sbjct:   189 ESITKKRKLGPKAPNPLSVKKKKKVNSPSDEVKDKEDTSKEKKKRRRRKHKSNTNVPVSN 248

Query:   204 G 204
             G
Sbjct:   249 G 249

GO:0003723 "RNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA;IDA

GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0032040 "small-subunit processome" evidence=IDA;IPI

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0006364 "rRNA processing" evidence=IEA

POMBASE|SPCC18.12c utp23 "rRNA processing protein Utp23 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 141 (54.7 bits), Expect = 1.7e-09, P = 1.7e-09
 Identities = 57/185 (30%), Positives = 81/185 (43%)

Query:    25 QSHSEAVEAAYKVAIA------RCEH-EKLKSADACLMEV--IGEKNPEHFFVATQDVDL 75
             Q +S++ E   ++ IA      RC H ++  S   C+  V  I  +N   + VATQD +L
Sbjct:    68 QLYSKSDELKQEIRIAKSFERRRCGHIDEALSPSECIQSVVNINGRNKHRYVVATQDPEL 127

Query:    76 RKKLQEVPGVPLIFGLRNALLLEPPS--SFQRKFVKTSEEARSCMXXXXXXXXXXXXXNI 133
             R+ L+ VPGVPLI+  R+ ++LEP S  +   K  K S +                  N 
Sbjct:   128 RQALRSVPGVPLIYMKRSVVILEPASRATLLEKHNKESVQMGMSKEEKLLLSGKKRSANE 187

Query:   134 LETKEIGDSSXXXXXXXXXXXXMQADKKTHYARKGMGVKDRPQFKRKRAKAPNPLSCKKK 193
             L   +  D+              +A+KK    RKG      P       K PNPLS KK+
Sbjct:   188 LAIDD-QDTKESTDLAGTEDSAPKANKK----RKG------P-------KGPNPLSIKKR 229

Query:   194 --KNH 196
               KNH
Sbjct:   230 SSKNH 234

GO:0003674 "molecular_function" evidence=ND

GO:0005730 "nucleolus" evidence=ISO;IDA

GO:0006364 "rRNA processing" evidence=ISO

GO:0032040 "small-subunit processome" evidence=ISO

FB|FBgn0031361 CG17652 [Drosophila melanogaster (taxid:7227)]

 Score = 84 (34.6 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
 Identities = 24/88 (27%), Positives = 45/88 (51%)

Query:    23 LGQSHSEAVEAAYKVAIARCEHE-KLKSADACLMEVIGEKNPEHFFVATQDVDLRKKLQE 81
             LG   + A     +  + +C HE K   A  C+  +  +     + VA+QD  L++ L++
Sbjct:    72 LGAPLTGATSIVKRFHVHKCGHEGKPVPASECIKSMTKDNR---YVVASQDRLLQESLRK 128

Query:    82 VPGVPLIFGLRNALLLEPPSSFQRKFVK 109
             +PG  L++  +   +LE PS   +K+V+
Sbjct:   129 IPGRCLLYLHKATPVLEAPSKASKKWVQ 156

GO:0006911 "phagocytosis, engulfment" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	205
cd09866	147	cd09866, PIN_Fcf1-Utp23-H, PIN domain of rRNA-proc	5e-28
pfam04900	101	pfam04900, Fcf1, Fcf1	2e-20
cd08553	120	cd08553, PIN_Fcf1-like, PIN domain of rRNA-process	4e-17
cd09865	148	cd09865, PIN_Utp23, PIN domain of rRNA-processing	5e-10
cd09864	143	cd09864, PIN_Fcf1, PIN domain of rRNA-processing p	3e-05
COG1412	136	COG1412, COG1412, Uncharacterized proteins of PilT	5e-04
cd09854	125	cd09854, PIN_VapC-Smg6_family, PIN domains of VapC	0.003

>gnl|CDD|189036 cd09866, PIN_Fcf1-Utp23-H, PIN domain of rRNA-processing protein Fcf1- and Utp23-like homologs found in eukaryotes except fungi

 Score =  102 bits (257), Expect = 5e-28
 Identities = 37/77 (48%), Positives = 53/77 (68%), Gaps = 1/77 (1%)

Query: 23  LGQSHSEAVEAAYKVAIARCEHEKLK-SADACLMEVIGEKNPEHFFVATQDVDLRKKLQE 81
           LG     A+  A +  +A+C HEK   SA  CL  +IG+ NPEH+FVATQD +LR+KL++
Sbjct: 71  LGPDLYGALLIAKRFQVAKCGHEKSPVSASECLKSMIGDNNPEHYFVATQDKELREKLRK 130

Query: 82  VPGVPLIFGLRNALLLE 98
           +PGVPL++   N ++LE
Sbjct: 131 IPGVPLLYLHNNTIVLE 147

PIN domain homologs of Fcf1/Utp24 (FAF1-copurifying factor 1/U three-associated protein 24) and Utp23, essential proteins involved in pre-rRNA processing and 40S ribosomal subunit assembly, are included in this subfamily. Fcf1 is a component of the small subunit (SSU) processome and an essential nucleolar protein required for processing of the 18S pre-rRNA at sites A0-A2. These PIN (PilT N terminus) domains are homologs of flap endonuclease-1 (FEN1)-like PIN domains, but apparently lack the H3TH domain or extensive arch/clamp region seen in the latter. PIN domains typically contain three or four conserved acidic residues (putative metal-binding, active site residues). The Fcf1-Utp23 homolog PIN domain subfamily has three of these conserved acidic residues rather than the four seen in the Fcf1 PIN domain subfamily. Length = 147

>gnl|CDD|218319 pfam04900, Fcf1, Fcf1

 Score = 81.9 bits (203), Expect = 2e-20
 Identities = 31/84 (36%), Positives = 52/84 (61%), Gaps = 5/84 (5%)

Query: 20  LFRLGQSHSEAVEAAYKVAI--ARCEHEK-LKSADACLMEVIGEKNPEHFFVATQDVDLR 76
           L +LG     A++ A        +C H+     AD C+++ +G+ N   + VATQD +LR
Sbjct: 20  LEKLGPKFRGALKIAKDKRFERLKCNHKGTEVYADDCILDRVGKHNC--YIVATQDRELR 77

Query: 77  KKLQEVPGVPLIFGLRNALLLEPP 100
           ++L+++PGVP+I+  RN ++LEPP
Sbjct: 78  RRLRKIPGVPIIYINRNVMVLEPP 101

Fcf1 is a nucleolar protein involved in pre-rRNA processing. Depletion of yeast Fcf1 and Fcf2 leads to a decrease in synthesis of the 18S rRNA and results in a deficit in 40S ribosomal subunits. Length = 101

>gnl|CDD|189021 cd08553, PIN_Fcf1-like, PIN domain of rRNA-processing proteins, Fcf1 (Utp24, YDR339C), Utp23 (YOR004W), and other eukaryotic homologs

 Score = 73.5 bits (181), Expect = 4e-17
 Identities = 33/79 (41%), Positives = 53/79 (67%)

Query: 20  LFRLGQSHSEAVEAAYKVAIARCEHEKLKSADACLMEVIGEKNPEHFFVATQDVDLRKKL 79
           L  LG+   +A + A  +    C H++  SAD CL++++ + N   +FVATQD DLR KL
Sbjct: 42  LESLGKKLKDAFKIAKTLERLNCNHKEGASADECLLDIVKKHNNHRYFVATQDQDLRVKL 101

Query: 80  QEVPGVPLIFGLRNALLLE 98
           +++PGVPL++ L+N ++LE
Sbjct: 102 RKIPGVPLVYILQNKMILE 120

Fcf1 (FAF1-copurifying factor 1, also known as Utp24) and Utp23 (U three-associated protein 23) are essential proteins involved in pre-rRNA processing and 40S ribosomal subunit assembly. Components of the small subunit (SSU) processome, Fcf1 and Utp23 are essential nucleolar proteins that are required for processing of the 18S pre-rRNA at sites A0-A2. The Fcf1 protein was reported to interact with Pmc1p (vacuolar Ca2+ ATPase) and Cor1p (core subunit of the ubiquinol-cytochrome c reductase complex). The PIN (PilT N terminus) domains of these proteins are homologs of flap endonuclease-1 (FEN1)-like PIN domains, but apparently lack the H3TH domain or extensive arch/clamp region seen in the latter. PIN domains typically contain three or four conserved acidic residues (putative metal-binding, active site residues). The Fcf1 PIN domain subfamily has four of these putative active site residues. Point mutation studies showed that the conserved acidic residues in the putative active site of Saccharomyces cerevisiae Fcf1 are essential for pre-rRNA processing at sites A1 and A2, whereas the presence of the Fcf1 protein itself is also required for cleavage at site A0. S. cerevisiae Utp23 lacks several of these key residues and mutation of the conserved acidic residues seen in Utp23 did not interfere with rRNA maturation and cell viability. The subfamily of Fcf1- and Utp23-like homologs found in eukaryotes (except fungi) posses three of the four conserved residues seen in S. cerevisiae Fcf1. Length = 120

>gnl|CDD|189035 cd09865, PIN_Utp23, PIN domain of rRNA-processing protein, Utp23 (YOR004W), and other fungal homologs

 Score = 55.5 bits (134), Expect = 5e-10
 Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 4/83 (4%)

Query: 20  LFRLGQSHSEAVEAAYKVAIARCEHEKLK--SADACLMEVIGEK--NPEHFFVATQDVDL 75
           L+ LG++   A++ A      RC H      S D CL  V+  K  N   + VATQD  L
Sbjct: 66  LYALGKTVQRAIDLAKTFERRRCNHRDADALSPDECLKSVVDPKGKNKHRYIVATQDPPL 125

Query: 76  RKKLQEVPGVPLIFGLRNALLLE 98
           R  L+ +PGVPLI   R+ ++LE
Sbjct: 126 RTDLRSIPGVPLIHINRSVMILE 148

Saccharomyces cerevisiae Utp23 (U three-associated protein 23), component of the small subunit (SSU) processome, is an essential protein involved in pre-rRNA processing and 40S ribosomal subunit assembly. The PIN (PilT N terminus) domain of this protein is a homolog of flap endonuclease-1 (FEN1)-like PIN domains, but apparently lack the H3TH domain or extensive arch/clamp region seen in the latter. PIN domains typically contain three or four conserved acidic residues (putative metal-binding, active site residues. S. cerevisiae Utp23 lacks several of these key residues and mutation of the conserved acidic residues seen in Utp23 did not interfere with rRNA maturation and cell viability. Length = 148

>gnl|CDD|189034 cd09864, PIN_Fcf1, PIN domain of rRNA-processing protein, Fcf1 (Utp24, YDR339C), and other eukaryotic homologs

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 17/67 (25%)

Query: 35  YKVA--IAR--------CEHEKLKSADACLMEVIGEKNPEH--FFVATQDVDLRKKLQEV 82
           Y+VA  IA+        C+H K   AD CL+E +     +H  + VAT D DL+++++++
Sbjct: 71  YRVALKIAKDPRFERLPCDH-KGTYADDCLVERV----TQHRCYIVATCDRDLKRRIRKI 125

Query: 83  PGVPLIF 89
           PGVP+++
Sbjct: 126 PGVPIMY 132

Fcf1/Utp24 (FAF1-copurifying factor 1/U three-associated protein 24) is an essential protein involved in pre-rRNA processing and 40S ribosomal subunit assembly. Component of the small subunit (SSU) processome, Fcf1 is an essential nucleolar protein that is required for processing of the 18S pre-rRNA at sites A0-A2. The Fcf1 protein was reported to interact with Pmc1p (vacuolar Ca2+ ATPase) and Cor1p (core subunit of the ubiquinol-cytochrome c reductase complex). The PIN (PilT N terminus) domain of this protein is a homolog of flap endonuclease-1 (FEN1)-like PIN domains, but apparently lack the H3TH domain or extensive arch/clamp region seen in the latter. PIN domains typically contain three or four conserved acidic residues (putative metal-binding, active site residues). The Fcf1 PIN domain subfamily has four of these putative active site residues and the Fcf1-Utp23 homolog PIN domain subfamily has three of them. Point mutation studies of the conserved acidic residues in the putative active site of Saccharomyces cerevisiae Fcf1 determined they were essential for pre-rRNA processing at sites A1 and A2, whereas the presence of the Fcf1 protein itself is also required for cleavage at site A0. Length = 143

>gnl|CDD|224330 COG1412, COG1412, Uncharacterized proteins of PilT N-term

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 20  LFRLGQSHSEAVEAAYKVAIARCEH----EKLKSADACLMEVIGEKNPEHFFVATQDVDL 75
           L +L + H    +A   +A+   E      K + AD CL+E   +     + VAT D +L
Sbjct: 54  LEKLKRKHR--GKARIAIALKYAERLECIHKGRYADECLLEAALKHG--RYIVATNDKEL 109

Query: 76  RKKLQEVPGVPLIF-GLRNALLLEPPS 101
           +++L+E  G+P+I    R  L++E  S
Sbjct: 110 KRRLREN-GIPVITLRQRKLLIIERLS 135

/Vapc superfamily [General function prediction only]. Length = 136

>gnl|CDD|189024 cd09854, PIN_VapC-Smg6_family, PIN domains of VapC and Smg6 ribonucleases, ribosome assembly factor NOB1, rRNA-processing protein Fcf1, Archaeoglobus fulgidus AF0591 protein, and homologs

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 7/78 (8%)

Query: 11  LSSSPPSLFLFRLGQSHSEAVEAAYKVAIARCEHEKLKSADACLMEVIGEKNPEHFFVAT 70
           +          R    H E  E  +   + R  +E +  AD C +          F VAT
Sbjct: 54  IRKDC--RDHKRFICFHKEFSEHTF---VERLPNETINDADDCAINKTCMHR--MFIVAT 106

Query: 71  QDVDLRKKLQEVPGVPLI 88
            D DLR+  ++ PGV + 
Sbjct: 107 CDADLREAARKEPGVIIK 124

PIN (PilT N terminus) domains of such ribonucleases as the toxins of prokaryotic toxin/antitoxin operons FitAB and VapBC, as well as, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and, rRNA-processing protein Fcf1, are included in this family. Also included are the PIN domains of the Pyrobaculum aerophilum Pea0151 and Archaeoglobus fulgidus AF0591 proteins and other similar archaeal homologs. These PIN domains are structural homologs of flap endonuclease-1 (FEN1)-like PIN domains, but lack the extensive arch/clamp region and the H3TH (helix-3-turn-helix) domain, an atypical helix-hairpin-helix-2-like region, seen in FEN1-like PIN domains. PIN domains typically contain three or four highly conserved acidic residues (putative metal-binding, active site residues) which cluster at the C-terminal end of the beta-sheet and form a negatively charged pocket near the center of the molecule. Length = 125

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	205
KOG3164	236	consensus Uncharacterized proteins of PilT N-term.	100.0
PF04900	101	Fcf1: Fcf1; InterPro: IPR006984 This family is com	99.96
KOG3165	195	consensus Predicted nucleic-acid-binding protein,	99.93
COG1412	136	Uncharacterized proteins of PilT N-term./Vapc supe	99.83
PRK13764	602	ATPase; Provisional	94.73
PF13638	133	PIN_4: PIN domain; PDB: 2HWW_C 2HWX_A 2DOK_B 2HWY_	92.32
smart00670	111	PINc Large family of predicted nucleotide-binding	90.13
PF05991	166	NYN_YacP: YacP-like NYN domain; InterPro: IPR01029	80.68

>KOG3164 consensus Uncharacterized proteins of PilT N-term

Probab=100.00  E-value=2.4e-48  Score=330.32  Aligned_cols=161  Identities=36%  Similarity=0.511  Sum_probs=138.4

Q ss_pred             cceeccchHHHHHHhhccchHHHHHHHhhcceeecCCCCCCCHHHHHHHHHhccCCccEEEEccCHHHHHHhhcCCCCcE
Q 043680            8 LPLLSSSPPSLFLFRLGQSHSEAVEAAYKVAIARCEHEKLKSADACLMEVIGEKNPEHFFVATQDVDLRKKLQEVPGVPL   87 (205)
Q Consensus         8 ~~l~tT~CVl~ELe~LG~~~~~Al~iaK~f~~~kC~H~~~~~a~~CI~~~v~~~N~~~yiVATQD~~Lr~~LR~ipGVPl   87 (205)
                      +-|+||.|||.|||.+|.++.||+.||++|++++|+|.++.+|++||.+||+.+|+|||||||||++||+.||.+|||||
T Consensus        57 vKL~tTqCvikele~~g~~l~ga~~iAK~fe~~~C~H~~~~s~seCl~svv~~~Nk~~YvvATQD~el~~kLr~~pgvPl  136 (236)
T KOG3164|consen   57 VKLMTTQCVIKELEELGKDLYGAKGIAKQFEIRNCNHKDARSPSECLRSVVRISNKHHYVVATQDQELRRKLRKEPGVPL  136 (236)
T ss_pred             CeeeehHHHHHHHHHhCcchhhhHHHHHHHhHhcCCCCCCCCHHHHHHHHHhccCCceEEEecCCHHHHHHHhcCCCCce
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCceEEEeCCChhhHHHHHHHHHhhccCCHHHHHHHhhhhhhhhhhhhcCCCCCchhhHHHHHHHHhhhhhhhhhhc
Q 043680           88 IFGLRNALLLEPPSSFQRKFVKTSEEARSCMTKSEFKKLKKSTKNILETKEIGDSSNKNEELENQKLEMQADKKTHYARK  167 (205)
Q Consensus        88 iyi~~~~~~LE~PS~as~~~~~~~e~~kl~~~~~E~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (205)
                      ||+.+++|+||+||++|..+++.+|+++|. +..|.+.++++.....+.            ...|.              
T Consensus       137 i~~~r~t~vld~~S~at~~~sk~se~~~L~-~~~e~e~~~k~~~e~~~l------------~~~E~--------------  189 (236)
T KOG3164|consen  137 IYLKRNTLVLDAPSQATAKYSKDSEEKKLT-SDNEKEIDKKLLEEKGAL------------KGKET--------------  189 (236)
T ss_pred             EEEecceEEecCcchhhHHhhcchhhhhcc-ccchHHHHHHHHHHhhcc------------cchhh--------------
Confidence            999999999999999999999989999994 877877776553321110            11111              


Q ss_pred             cCCCCCCCccccCCCCCCCCCCcccccCCCCCC
Q 043680          168 GMGVKDRPQFKRKRAKAPNPLSCKKKKNHENPS  200 (205)
Q Consensus       168 ~~~~~~~~~~KrK~~KgPNPLS~KKKKkk~~~~  200 (205)
                           ....+|||+|||||||||||+++++..+
T Consensus       190 -----s~~~kk~k~~k~pNpLs~kkk~k~~~~~  217 (236)
T KOG3164|consen  190 -----SNKEKKRKGPKGPNPLSCKKKKKKKSNT  217 (236)
T ss_pred             -----hhhhhcCCCCCCCCCccccccccccccc
Confidence                 0124577799999999999998876654

/Vapc superfamily [General function prediction only]

>PF04900 Fcf1: Fcf1; InterPro: IPR006984 This family is comprises of uncharacterised eukaryotic proteins

Probab=99.96  E-value=2.3e-30  Score=196.51  Aligned_cols=91  Identities=36%  Similarity=0.659  Sum_probs=86.5

Q ss_pred             cceeccchHHHHHHhhccchHHHHHHHhh--cceeecCCCCC-CCHHHHHHHHHhccCCccEEEEccCHHHHHHhhcCCC
Q 043680            8 LPLLSSSPPSLFLFRLGQSHSEAVEAAYK--VAIARCEHEKL-KSADACLMEVIGEKNPEHFFVATQDVDLRKKLQEVPG   84 (205)
Q Consensus         8 ~~l~tT~CVl~ELe~LG~~~~~Al~iaK~--f~~~kC~H~~~-~~a~~CI~~~v~~~N~~~yiVATQD~~Lr~~LR~ipG   84 (205)
                      +-+|||+||++||+.||+.++++..+|+.  |++++|+|.+. .+|++||.++++.+|.  |||||||.+||++||++||
T Consensus         8 ~~~~vt~cVl~EL~~L~~~~~~~~~~a~~~~~~~~~c~h~~~~~~addci~~~~~~~~~--~~VaT~D~~Lr~~lr~~~G   85 (101)
T PF04900_consen    8 VKPYVTQCVLEELESLGKKFKGALRIAKRKALERRKCNHKETPGSADDCILDLAGKNNK--YIVATQDKELRRRLRKIPG   85 (101)
T ss_pred             cEEEecHHHHHHHHHhcccccchhhhhhchhhHhhcCCCCCCCcCHHHHHHHHhccCCe--EEEEecCHHHHHHHhcCCC
Confidence            46899999999999999999999999999  99999999765 8999999999987765  9999999999999999999


Q ss_pred             CcEEEecCceEEEeCC
Q 043680           85 VPLIFGLRNALLLEPP  100 (205)
Q Consensus        85 VPliyi~~~~~~LE~P  100 (205)
                      |||||+++++++||+|
T Consensus        86 vPvi~l~~~~~~le~p  101 (101)
T PF04900_consen   86 VPVIYLRRNVLILEPP  101 (101)
T ss_pred             CCEEEEECCEEEecCC
Confidence            9999999999999998

>KOG3165 consensus Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]

Probab=99.93  E-value=5e-26  Score=186.65  Aligned_cols=93  Identities=26%  Similarity=0.399  Sum_probs=87.8

Q ss_pred             eeccchHHHHHHhhccchHHHHHHHhh--cceeecCCCCCCCHHHHHHHHHhccCCccEEEEccCHHHHHHhhcCCCCcE
Q 043680           10 LLSSSPPSLFLFRLGQSHSEAVEAAYK--VAIARCEHEKLKSADACLMEVIGEKNPEHFFVATQDVDLRKKLQEVPGVPL   87 (205)
Q Consensus        10 l~tT~CVl~ELe~LG~~~~~Al~iaK~--f~~~kC~H~~~~~a~~CI~~~v~~~N~~~yiVATQD~~Lr~~LR~ipGVPl   87 (205)
                      .++|+||+.|||+||..|+-||.+|+.  |+++.|.| ++.+|||||...|..+  .+|||||+|.+|.+|+|+||||||
T Consensus        97 pcitDCVmaELEkLg~kyrvALri~kDpr~eRL~C~H-KGTYADDClv~RV~qH--kCYIVAT~D~dLK~RIrkIPGVPi  173 (195)
T KOG3165|consen   97 PCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTH-KGTYADDCLVQRVTQH--KCYIVATNDRDLKQRIRKIPGVPI  173 (195)
T ss_pred             cchhHHHHHHHHHhcchhhhhhhhhcCCccccccccc-CCcchhhHHHHHHhhc--ceEEEEeccHHHHHHHhcCCCCce
Confidence            467889999999999999999999996  99999999 6899999999999887  689999999999999999999999


Q ss_pred             EEecCceEEEeCCChhhH
Q 043680           88 IFGLRNALLLEPPSSFQR  105 (205)
Q Consensus        88 iyi~~~~~~LE~PS~as~  105 (205)
                      ||+.+..+.+|.+.+++.
T Consensus       174 m~v~~hk~~IEr~pda~~  191 (195)
T KOG3165|consen  174 MYVANHKYSIERLPDATL  191 (195)
T ss_pred             EEEecceeeeeeCCcccc
Confidence            999999999999988863

>COG1412 Uncharacterized proteins of PilT N-term

Probab=99.83  E-value=7.1e-21  Score=152.77  Aligned_cols=90  Identities=30%  Similarity=0.402  Sum_probs=81.4

Q ss_pred             ceeccchHHHHHHhhccchHHHHH--HHhh-cceeecCCCCCCCHHHHHHHHHhccCCccEEEEccCHHHHHHhhcCCCC
Q 043680            9 PLLSSSPPSLFLFRLGQSHSEAVE--AAYK-VAIARCEHEKLKSADACLMEVIGEKNPEHFFVATQDVDLRKKLQEVPGV   85 (205)
Q Consensus         9 ~l~tT~CVl~ELe~LG~~~~~Al~--iaK~-f~~~kC~H~~~~~a~~CI~~~v~~~N~~~yiVATQD~~Lr~~LR~ipGV   85 (205)
                      .+++|+||+.||+.|+..+.++..  +|.. +++++|.|. +.+||+||.+++..++  +|||||||.+|+++||+. ||
T Consensus        43 ~~~Ip~~Vi~EL~~l~~~~~~~~r~~ia~~~~er~~~~~~-~~~aDe~i~~~a~~~~--~~iVaTnD~eLk~rlr~~-GI  118 (136)
T COG1412          43 KPAIPSCVIRELEKLKRKHRGKARIAIALKYAERLECIHK-GRYADECLLEAALKHG--RYIVATNDKELKRRLREN-GI  118 (136)
T ss_pred             cccchHHHHHHHHHHHHhcCchHHHHHHHHHhhccCcccc-CCChHHHHHHHHHHcC--CEEEEeCCHHHHHHHHHc-CC
Confidence            578999999999999999888777  7776 999999997 8899999999998774  899999999999999998 99


Q ss_pred             cEEEec-CceEEEeCCCh
Q 043680           86 PLIFGL-RNALLLEPPSS  102 (205)
Q Consensus        86 Pliyi~-~~~~~LE~PS~  102 (205)
                      |+||++ ++.+++|.+++
T Consensus       119 Pvi~lr~r~~~~ie~~~~  136 (136)
T COG1412         119 PVITLRQRKLLIIERLSD  136 (136)
T ss_pred             CEEEEeCCeEEEeeCCCC
Confidence            999999 56788998763

/Vapc superfamily [General function prediction only]

>PRK13764 ATPase; Provisional

Probab=94.73  E-value=0.081  Score=52.08  Aligned_cols=81  Identities=16%  Similarity=0.055  Sum_probs=59.7

Q ss_pred             ceeccchHHHHHHhhccchH----HHHHHHhhccee---------ecCCC---------CCCCHHHHHHHHHhccCCccE
Q 043680            9 PLLSSSPPSLFLFRLGQSHS----EAVEAAYKVAIA---------RCEHE---------KLKSADACLMEVIGEKNPEHF   66 (205)
Q Consensus         9 ~l~tT~CVl~ELe~LG~~~~----~Al~iaK~f~~~---------kC~H~---------~~~~a~~CI~~~v~~~N~~~y   66 (205)
                      .++++.-|+.||+.+....+    .|++.++++...         -.++.         +.-..|+-|..++.+.   ..
T Consensus        28 ~IiIP~~Vl~ELe~~A~~~r~~G~~gLeeL~~L~~l~~~g~i~ie~~~~~p~~~~~~~~~~gevD~~I~~~A~~~---~~  104 (602)
T PRK13764         28 TIIIPEAVVAELEAQANQGREIGFSGLEELKKLRELAEEGLIELEFVGERPTLEQIKLAKGGEIDALIREVAKEL---GA  104 (602)
T ss_pred             EEEeehHHHHHHHHHhhccchhhHHHHHHHHHHHHhhccCceEEEEeccccchhhcccccCCCHHHHHHHHHHHc---CC
Confidence            57888899999999976443    266666665322         12221         1137788888988754   57


Q ss_pred             EEEccCHHHHHHhhcCCCCcEEEecCc
Q 043680           67 FVATQDVDLRKKLQEVPGVPLIFGLRN   93 (205)
Q Consensus        67 iVATQD~~Lr~~LR~ipGVPliyi~~~   93 (205)
                      ++.|+|..|+..++.. |||++|++..
T Consensus       105 ~lvT~D~~l~~~A~~~-GI~V~~l~~~  130 (602)
T PRK13764        105 TLVTSDRVQAEVARAK-GIDVIYLKPE  130 (602)
T ss_pred             EEEeCCHHHHHHHHHc-CCEEEEeCCC
Confidence            8889999999999985 9999999985

>PF13638 PIN_4: PIN domain; PDB: 2HWW_C 2HWX_A 2DOK_B 2HWY_B 2WP8_J

Probab=92.32  E-value=0.45  Score=36.52  Aligned_cols=82  Identities=23%  Similarity=0.210  Sum_probs=46.1

Q ss_pred             cceeccchHHHHHHhhccchH----H----HHHHHhhcc--------eeecCCC----------CCCCHHHHHHHHHh--
Q 043680            8 LPLLSSSPPSLFLFRLGQSHS----E----AVEAAYKVA--------IARCEHE----------KLKSADACLMEVIG--   59 (205)
Q Consensus         8 ~~l~tT~CVl~ELe~LG~~~~----~----Al~iaK~f~--------~~kC~H~----------~~~~a~~CI~~~v~--   59 (205)
                      ..++++.+|+.||+.+.....    .    |..+.+-+.        ...+...          .....|+.|++.+-  
T Consensus        21 ~~ivIP~~Vl~ELd~lk~~~~~~~~~~~~~ar~~~~~l~~~~~~~~~~i~~q~~~~~~~~~~~~~~~~~D~~Il~~a~~~  100 (133)
T PF13638_consen   21 NKIVIPLTVLEELDRLKKSSRDRDRELRKRAREAIRWLEKLLKRGSRSIRVQTSDEEIDEDLNLDAQRNDDRILNCALYL  100 (133)
T ss_dssp             SEEEEEHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCT-TTEEECTTTS-EES--S----HHHHHHHHHHHHH
T ss_pred             CEEEechHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCCCeEecchhhhhcchhhhccccccHHHHHHHHHHH
Confidence            347888899999999876554    2    222221111        1111111          12367777877663  


Q ss_pred             -ccC-CccEEEEccCHHHHHHhhcCCCCcEEEe
Q 043680           60 -EKN-PEHFFVATQDVDLRKKLQEVPGVPLIFG   90 (205)
Q Consensus        60 -~~N-~~~yiVATQD~~Lr~~LR~ipGVPliyi   90 (205)
                       ... ....++.|+|..||.+.+. -|||.+-+
T Consensus       101 ~~~~~~~~vvLvT~D~~l~~~A~~-~gi~~~~~  132 (133)
T PF13638_consen  101 QEENPGRKVVLVTNDKNLRLKARA-EGIPAVSY  132 (133)
T ss_dssp             HHHCGCEEEEEEE--HHHHHHHHH-TT--EE--
T ss_pred             HHhcCCCeEEEEeCCHHHHHHHhh-cccccccC
Confidence             222 4578999999999999998 49998743

>smart00670 PINc Large family of predicted nucleotide-binding domains

Probab=90.13  E-value=0.38  Score=35.27  Aligned_cols=67  Identities=24%  Similarity=0.145  Sum_probs=39.1

Q ss_pred             cceeccchHHHHHHhhcc--chHHHHHHHh----hc---------ceeecCCCC----CCCHHHHHHHHHhccCCccEEE
Q 043680            8 LPLLSSSPPSLFLFRLGQ--SHSEAVEAAY----KV---------AIARCEHEK----LKSADACLMEVIGEKNPEHFFV   68 (205)
Q Consensus         8 ~~l~tT~CVl~ELe~LG~--~~~~Al~iaK----~f---------~~~kC~H~~----~~~a~~CI~~~v~~~N~~~yiV   68 (205)
                      ..++++.+|+.||+.+..  .+...-.++.    .+         ....+.+..    ....+.+|..++-..+  .+++
T Consensus        25 ~~~~i~~~v~~El~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~a~~~~--~~~l  102 (111)
T smart00670       25 GEVYIPPTVLEELEYLAKLRSLKKLEELALEGKIKLKVLKEERKLEEEILERLSLKLELLPNDALILATAKELG--NVVL  102 (111)
T ss_pred             CcEEECHHHHHHHHHHHHHHHHhhHHHHHHhcccccceeecCCCeEEEecccCChhhcCCCChHHHHHHHHHCC--CCEE
Confidence            457899999999999762  2222122221    11         112222211    1136778888876542  5889


Q ss_pred             EccCHHHH
Q 043680           69 ATQDVDLR   76 (205)
Q Consensus        69 ATQD~~Lr   76 (205)
                      +|+|.+|+
T Consensus       103 vT~D~~l~  110 (111)
T smart00670      103 VTNDRDLR  110 (111)
T ss_pred             EeCCcccC
Confidence            99999876

From similarities to 5'-exonucleases, these domains are predicted to be RNases. PINc domains in nematode SMG-5 and yeast NMD4p are predicted to be involved in RNAi.

>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana

Probab=80.68  E-value=3.3  Score=33.98  Aligned_cols=38  Identities=21%  Similarity=0.365  Sum_probs=31.8

Q ss_pred             CCCHHHHHHHHHhccC--CccEEEEccCHHHHHHhhcCCCC
Q 043680           47 LKSADACLMEVIGEKN--PEHFFVATQDVDLRKKLQEVPGV   85 (205)
Q Consensus        47 ~~~a~~CI~~~v~~~N--~~~yiVATQD~~Lr~~LR~ipGV   85 (205)
                      +.+||+.|..++....  +...+|+|.|..++..++.. |.
T Consensus        76 ~~tAD~~Ie~~v~~~~~~~~~v~VVTSD~~iq~~~~~~-GA  115 (166)
T PF05991_consen   76 GETADDYIERLVRELKNRPRQVTVVTSDREIQRAARGR-GA  115 (166)
T ss_pred             CCCHHHHHHHHHHHhccCCCeEEEEeCCHHHHHHHhhC-CC
Confidence            4599999999997643  57899999999999999875 44

The function of this family is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	205
1o4w_A	147	PIN (PILT N-terminus) domain; structural genomics,	9e-06

>1o4w_A PIN (PILT N-terminus) domain; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS translation; 1.90A {Archaeoglobus fulgidus} SCOP: c.120.1.1 Length = 147

 Score = 42.9 bits (101), Expect = 9e-06
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 8/74 (10%)

Query: 20  LFRLGQSHSEAVEAAYKVAIA---RCEH-EKLKSADACLMEVIGEKNPEHFFVATQDVDL 75
           L +L  S     + A + A+      E  E     D  L+E   +       + T D +L
Sbjct: 65  LEKLEMSLRGKEKVAARFALKLLEHFEVVETESEGDPSLIEAAEKYG---CILITNDKEL 121

Query: 76  RKKLQEVPGVPLIF 89
           ++K ++  G+P+ +
Sbjct: 122 KRKAKQ-RGIPVGY 134

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	205
1o4w_A	147	PIN (PILT N-terminus) domain; structural genomics,	98.96
3ix7_A	134	Uncharacterized protein TTHA0540; unknown function	97.91
3i8o_A	142	KH domain-containing protein MJ1533; APC89320.5, m	96.69
2dok_A	186	Telomerase-binding protein EST1A; telomerase-assoc	96.43
2lcq_A	165	Putative toxin VAPC6; PIN domain, Zn ribbon domain	84.77

>1o4w_A PIN (PILT N-terminus) domain; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS translation; 1.90A {Archaeoglobus fulgidus} SCOP: c.120.1.1

Probab=98.96  E-value=1.1e-09  Score=86.20  Aligned_cols=80  Identities=18%  Similarity=0.219  Sum_probs=67.0

Q ss_pred             cceeccchHHHHHHhhcc--------chHHHHHHHhhcceeecCCCCCCCHHHHHHHHHhccCCccEEEEccCHHHHHHh
Q 043680            8 LPLLSSSPPSLFLFRLGQ--------SHSEAVEAAYKVAIARCEHEKLKSADACLMEVIGEKNPEHFFVATQDVDLRKKL   79 (205)
Q Consensus         8 ~~l~tT~CVl~ELe~LG~--------~~~~Al~iaK~f~~~kC~H~~~~~a~~CI~~~v~~~N~~~yiVATQD~~Lr~~L   79 (205)
                      ..++++.||+.||+.+..        ....++.++..++++.|+ . + + |.||.+++...+   ++|+|+|.+|++++
T Consensus        53 ~~~~I~~~vl~EL~~~~~~~~~~~~~~~~~~~~ll~~~~vv~~~-~-~-~-D~~Ila~A~~~~---~~LvT~D~~l~~~a  125 (147)
T 1o4w_A           53 SRFLITASVKRELEKLEMSLRGKEKVAARFALKLLEHFEVVETE-S-E-G-DPSLIEAAEKYG---CILITNDKELKRKA  125 (147)
T ss_dssp             EEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHTTSEEECCS-S-C-S-HHHHHHHHHHHT---CEEECCCHHHHHHH
T ss_pred             CCEEEcHHHHHHHHHHHhccCcchHHHHHHHHHHHhcCcEeeCC-C-C-c-hHHHHHHHHHhC---CEEEECCHHHHHHH
Confidence            578899999999999874        334567788888888887 2 3 6 999999997653   89999999999999


Q ss_pred             hcCCCCcEEEecCceE
Q 043680           80 QEVPGVPLIFGLRNAL   95 (205)
Q Consensus        80 R~ipGVPliyi~~~~~   95 (205)
                      +.. |||++|++++.+
T Consensus       126 ~~~-Gv~vi~~~~~~~  140 (147)
T 1o4w_A          126 KQR-GIPVGYLKEDKR  140 (147)
T ss_dssp             HHT-TCCEECCCCCCC
T ss_pred             HHC-CCeEEEecCCcE
Confidence            998 999999998764

>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}

Probab=97.91  E-value=2.6e-05  Score=61.53  Aligned_cols=79  Identities=16%  Similarity=0.088  Sum_probs=60.4

Q ss_pred             ceeccchHHHHHHhhcc------c--hHHHHHHHhhc------ceeecCCCCCCCHHHHHHHHHhccCCccEEEEccCHH
Q 043680            9 PLLSSSPPSLFLFRLGQ------S--HSEAVEAAYKV------AIARCEHEKLKSADACLMEVIGEKNPEHFFVATQDVD   74 (205)
Q Consensus         9 ~l~tT~CVl~ELe~LG~------~--~~~Al~iaK~f------~~~kC~H~~~~~a~~CI~~~v~~~N~~~yiVATQD~~   74 (205)
                      +++++.+|+.||+.+..      .  -+.++++.+++      +... .-.+...+|+.|..++...+   .+|.|+|..
T Consensus        32 ~liIP~~Vl~ELq~lA~s~d~~~r~rGr~gL~iL~~L~~~~~vei~~-~~~~~~~vD~~ll~lA~~~~---~~lvTnD~~  107 (134)
T 3ix7_A           32 PLWVPHFVLKELQHFADSQDPLRRAKGRRGLETLERLREAAPLEVLE-TTPKGESVDEKLLFLARDLE---AALVTNDHA  107 (134)
T ss_dssp             CEEEEHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHSCEEEEC-CCCSCSSHHHHHHHHHHHTT---CEEEESCHH
T ss_pred             ceecHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhcCCEEEeC-CCCCcccHHHHHHHHHHHhC---CEEEeCCHH
Confidence            68999999999999973      1  23377777764      2322 22234579999999998763   688899999


Q ss_pred             HHHHhhcCCCCcEEEecC
Q 043680           75 LRKKLQEVPGVPLIFGLR   92 (205)
Q Consensus        75 Lr~~LR~ipGVPliyi~~   92 (205)
                      |++.++.. |||++|++.
T Consensus       108 L~kvA~~~-GI~Vl~l~~  124 (134)
T 3ix7_A          108 LLQMARIY-GVKALSIQA  124 (134)
T ss_dssp             HHHHHHHT-TCCEEEHHH
T ss_pred             HHHHHHHC-CCeEEehHH
Confidence            99999985 999999874

>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}

Probab=96.69  E-value=0.0024  Score=50.78  Aligned_cols=81  Identities=16%  Similarity=0.050  Sum_probs=59.7

Q ss_pred             eeccchHHHHHHhhccchH----HHHHHHhhccee---------ecCC---------CCCCCHHHHHHHHHhccCCccEE
Q 043680           10 LLSSSPPSLFLFRLGQSHS----EAVEAAYKVAIA---------RCEH---------EKLKSADACLMEVIGEKNPEHFF   67 (205)
Q Consensus        10 l~tT~CVl~ELe~LG~~~~----~Al~iaK~f~~~---------kC~H---------~~~~~a~~CI~~~v~~~N~~~yi   67 (205)
                      ++++..|+.||+.+...-+    .++++.+++...         -.+.         .+.-..|.-|..++...+   .+
T Consensus        32 iiIP~~Vl~EL~~~a~~~r~~GrrGLe~L~~L~~~~~~~~i~vei~~~r~~~~~i~~~~~~~vD~~l~~lA~~~~---a~  108 (142)
T 3i8o_A           32 IIIPEAVVSELEYQANMGREIGYKGIEELRKLIEKASEHNIKVEYYGERPTREEIFLAKSGEIDAMIRKVAKETN---SI  108 (142)
T ss_dssp             EEEEHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTTCCEEEESCCCCHHHHHSCCSSSHHHHHHHHHHHTT---CE
T ss_pred             EEehHHHHHHHHHHHHccchhhHHHHHHHHHHHHHhhccCceEEEecccCchhhhccccCCcHHHHHHHHHHHhC---CE
Confidence            8888999999999976432    277777765421         1111         122468888999987663   57


Q ss_pred             EEccCHHHHHHhhcCCCCcEEEecCce
Q 043680           68 VATQDVDLRKKLQEVPGVPLIFGLRNA   94 (205)
Q Consensus        68 VATQD~~Lr~~LR~ipGVPliyi~~~~   94 (205)
                      |.|+|..|++.++.. |||++|++...
T Consensus       109 lvTnD~~l~kvA~~~-GI~V~~l~~~~  134 (142)
T 3i8o_A          109 LLTSDWIQYNLAKAQ-GIEAYFLEAAE  134 (142)
T ss_dssp             EEESCHHHHHHHHHT-TCCEEECCCCC
T ss_pred             EEcCCHHHHHHHHHc-CCEEEEecccc
Confidence            889999999999985 99999998743

>2dok_A Telomerase-binding protein EST1A; telomerase-associated protein, unknown function; 1.80A {Homo sapiens} PDB: 2hww_A 2hwx_A

Probab=96.43  E-value=0.0056  Score=49.65  Aligned_cols=83  Identities=18%  Similarity=0.078  Sum_probs=54.0

Q ss_pred             cceeccchHHHHHHhhccchH-----------------HHHHHHhh-cce----ee-------------cCCCC----CC
Q 043680            8 LPLLSSSPPSLFLFRLGQSHS-----------------EAVEAAYK-VAI----AR-------------CEHEK----LK   48 (205)
Q Consensus         8 ~~l~tT~CVl~ELe~LG~~~~-----------------~Al~iaK~-f~~----~k-------------C~H~~----~~   48 (205)
                      -.++++..||+||+.|.....                 .|+.+... |..    .+             ..+.+    ..
T Consensus        38 ~~viIP~~VleELd~lk~~~~~~~~~~~~~~~~~~~AR~a~~~L~~~~~~~~~~i~~~~~~g~~l~~v~~~~~~~~~~~~  117 (186)
T 2dok_A           38 YILVVPLIVINELDGLAKGQETDHRAGGYARVVQEKARKSIEFLEQRFESRDSCLRALTSRGNELESIAFRSEDITGQLG  117 (186)
T ss_dssp             SEEEEEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEECTTSCEESCCTTCCCCC----C
T ss_pred             eEEEECHHHHHHHHHhccCCCccccccchhHHHHHHHHHHHHHHHHHHhhCCCeEEEEeccCcccccccccccccccCCC
Confidence            457888999999999865332                 23333332 211    11             12211    34


Q ss_pred             CHHHHHHHHHhccC------------------CccEEEEccCHHHHHHhhcCCCCcEEEec
Q 043680           49 SADACLMEVIGEKN------------------PEHFFVATQDVDLRKKLQEVPGVPLIFGL   91 (205)
Q Consensus        49 ~a~~CI~~~v~~~N------------------~~~yiVATQD~~Lr~~LR~ipGVPliyi~   91 (205)
                      .+|+.|+.++..-.                  ....|+.|+|..||.+.+.. |||++.++
T Consensus       118 ~~D~~IL~~a~~l~~~~~~~~~~~~~~~~~~~~~~vvLvTnD~nLr~KA~~~-Gi~~~~~~  177 (186)
T 2dok_A          118 NNDDLILSCCLHYCKDKAKDFMPASKEEPIRLLREVVLLTDDRNLRVKALTR-NVPVRDIP  177 (186)
T ss_dssp             CHHHHHHHHHHTTCCCCGGGGCCC---CCCEEEEEEEEECCCHHHHHHHHHT-TCCEECHH
T ss_pred             CccHHHHHHHHHHHHhcccccccccccccccCCCcEEEEeCcHHHHHHHHHC-CCeeCcHH
Confidence            79999999885321                  12578999999999999985 99998764

>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}

Probab=84.77  E-value=0.96  Score=35.48  Aligned_cols=77  Identities=12%  Similarity=-0.036  Sum_probs=48.9

Q ss_pred             ceeccchHHHHHHhhccchHHHHHHHhh---cceeec---------------CCCCCC-CHHHHHHHHHhccCCccEEEE
Q 043680            9 PLLSSSPPSLFLFRLGQSHSEAVEAAYK---VAIARC---------------EHEKLK-SADACLMEVIGEKNPEHFFVA   69 (205)
Q Consensus         9 ~l~tT~CVl~ELe~LG~~~~~Al~iaK~---f~~~kC---------------~H~~~~-~a~~CI~~~v~~~N~~~yiVA   69 (205)
                      ++||+..|+.||....  .+..+.....   +....=               +-.... .+|..++.+....+   ..|.
T Consensus        27 ~l~~p~~V~~El~~~~--~r~~l~~l~~~~~l~v~~~~~~~i~~v~~~~~~~gd~~~Ls~~D~~lIaLA~~l~---~~lv  101 (165)
T 2lcq_A           27 EGYTTPSVVEEIKDRE--SKIFLESLISAGKVKIAEPSKESIDRIIQVAKETGEVNELSKADIEVLALAYELK---GEIF  101 (165)
T ss_dssp             CEEECHHHHTTCCSSH--HHHHHHHHHHTTSEEECCCCHHHHHHHHHHHHHHSCSSCSCHHHHHHHHHHHHHT---CCEE
T ss_pred             CEEEChhhHHhhcCHH--HHHHHHHhhccCCEEEecCCHHHHHHHHHHHHHcCCcccCCHHHHHHHHhHHHhC---CeEE
Confidence            7999999999996432  2233433321   222210               100122 35566667775543   4788


Q ss_pred             ccCHHHHHHhhcCCCCcEEEec
Q 043680           70 TQDVDLRKKLQEVPGVPLIFGL   91 (205)
Q Consensus        70 TQD~~Lr~~LR~ipGVPliyi~   91 (205)
                      |.|..||+.++.. ||+++.++
T Consensus       102 T~D~~l~~vA~~~-Gv~v~~~~  122 (165)
T 2lcq_A          102 SDDYNVQNIASLL-GLRFRTLK  122 (165)
T ss_dssp             CCCHHHHHHHHHT-TCCEECCS
T ss_pred             cCcHHHHHHHHHC-CCeEEchh
Confidence            9999999999986 99999877

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	205
d1o4wa_	125	c.120.1.1 (A:) Hypothetical protein AF0591 {Archae	5e-09

>d1o4wa_ c.120.1.1 (A:) Hypothetical protein AF0591 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 125

class: Alpha and beta proteins (a/b)
fold: PIN domain-like
superfamily: PIN domain-like
family: PIN domain
domain: Hypothetical protein AF0591
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 50.2 bits (120), Expect = 5e-09
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 20  LFRLGQSHSEAVEAAYKVAIARCEH-EKLKSADACLMEVIGEKNPEHFFVATQDVDLRKK 78
           L +L  S     + A + A+   EH E +++       +I         + T D +L++K
Sbjct: 44  LEKLEMSLRGKEKVAARFALKLLEHFEVVETESEGDPSLIEAAEKYGCILITNDKELKRK 103

Query: 79  LQEVPGVPLIF 89
            +   G+P+ +
Sbjct: 104 AK-QRGIPVGY 113

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	205
d1o4wa_	125	Hypothetical protein AF0591 {Archaeon Archaeoglobu	99.74

>d1o4wa_ c.120.1.1 (A:) Hypothetical protein AF0591 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PIN domain-like
superfamily: PIN domain-like
family: PIN domain
domain: Hypothetical protein AF0591
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.74  E-value=2.8e-19  Score=137.44  Aligned_cols=87  Identities=21%  Similarity=0.242  Sum_probs=76.3

Q ss_pred             cceeccchHHHHHHhhccchHHHHHHHhhcceeecCCC----CCCCHHHHHHHHHhccCCccEEEEccCHHHHHHhhcCC
Q 043680            8 LPLLSSSPPSLFLFRLGQSHSEAVEAAYKVAIARCEHE----KLKSADACLMEVIGEKNPEHFFVATQDVDLRKKLQEVP   83 (205)
Q Consensus         8 ~~l~tT~CVl~ELe~LG~~~~~Al~iaK~f~~~kC~H~----~~~~a~~CI~~~v~~~N~~~yiVATQD~~Lr~~LR~ip   83 (205)
                      ..+++|.||+.||+.|+.++.++..++++|....|+|.    .+.++++||++++..   ++|||||||.+||++++. +
T Consensus        32 ~~~~ip~~Vi~EL~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Dd~il~~a~~---~~~iv~T~D~~Lr~~~~~-~  107 (125)
T d1o4wa_          32 SRFLITASVKRELEKLEMSLRGKEKVAARFALKLLEHFEVVETESEGDPSLIEAAEK---YGCILITNDKELKRKAKQ-R  107 (125)
T ss_dssp             EEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHTTSEEECCSSCSHHHHHHHHHH---HTCEEECCCHHHHHHHHH-T
T ss_pred             ceEEecHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhh---CCeEEEecCHHHHHHHHH-c
Confidence            46799999999999999999999999998888888873    456899999998864   579999999999999997 9


Q ss_pred             CCcEEEecCceE-EEe
Q 043680           84 GVPLIFGLRNAL-LLE   98 (205)
Q Consensus        84 GVPliyi~~~~~-~LE   98 (205)
                      |||+||++++.+ .||
T Consensus       108 GVpvi~l~~~~~l~~~  123 (125)
T d1o4wa_         108 GIPVGYLKEDKRVFVE  123 (125)
T ss_dssp             TCCEECCCCCCCCCCC
T ss_pred             CCcEEEEeCCceEEEE
Confidence            999999999864 455