Citrus Sinensis ID: 043696

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-
KLTGRNEFQGIGLLNFNDSEVDHWKQLIPDAEHVVLNLDHVSNDITWESLYPEWIDEEEEFEVPTCPSLPKLQVAGKPRIDLVAVKLPCIKLGTWSRDVARLHLQLEAARIASSSKGLHPVHVLLVTECFPIPNLFTCKDIVVREGNAWLYKPDLHRLREKLLLPVGSCELAVPLKAKENFYSERARREAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDETISDYHRGGLEAAGWKIHTIQRIRNPKAERDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMPEITATGNNATLFNSGVMVVEPSNCTFQLLMDHIYEIESYNGGDQGYLNEIFTWWHRIPKHMNFLKHFWEGDEEEKKHMKIRLFGADPPILYVLHYLGNKPWLCFRDYDCNWNVDILQEFASDIAHKTWWKVHDAMPEHLQKFCLLRSKQKAALEWDRRQAEKANYTDGHWKIKIQDKRLKTCFEDFCFWESMLWHWGEKNWTDNSTASTPPPPAITSASLSS
ccccccccEEEEEEEccccccHHHHHHccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccccccccccccEEcccEEEEcccHHHHHHHcccccccccccccccccccccccccccEEEEEEEEccccHHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHcccEEEEEccccccccccccHHHccccEEEEcccccccEEEEEccccccccccHHHcccccccccccccccccccEEEEEccHHHHHHHHHHHccccccccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHHcccccccccEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccc
cccccccccEEEEEEcccHHHHHHHHHcccccEEEEEcccccccccHHHcccHHccHHHccccccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccccHHHHHccccEEEEcccHHHHHHHccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHccEEEEEEEcccHHHHHHHHEEEcccEEEEEEEEcccEEEEEcHHHHHHHHHHHHHcccccccccccccHccccEEEEcccHHHHHHHHHHHHHccccccccccHHHHHHHcHccccccHHHHHHHHccccHHHHHHHcHHHccccccEEEEEEEcccccEEEcccccccccccccccccHHHHHHHHHHHHcccHHHHHcccccHHHHHHHHHHHHHHHHcccccccEEEEcccHHHHHHHHHHccHHHHHHHHcccccccccccccccccccccccccc
kltgrnefqgigllnfndsevdhwkqlipdAEHVVLNLdhvsnditweslypewideeeefevptcpslpklqvagkpridlvavklpciklgtwSRDVARLHLQLEAARIAssskglhpvHVLLVtecfpipnlftckdIVVRegnawlykpdlHRLREklllpvgscelavplkakenfysERARREAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDETIsdyhrggleaagwkihtiqrirnpkaerdaynewnyskfrlwqltdydkiifiDADLLILRnidflfempeitatgnnatlfnsgvmvvepsnctFQLLMDHIYEiesynggdqgylNEIFTWWHRIPKHMNFLKHFWEGDEEEKKHMKIrlfgadppiLYVLHYlgnkpwlcfrdydcnwNVDILQEFASDIAHKTWWKVHDAMPEHLQKFCLLRSKQKAALEWDRRQAEKAnytdghwkikIQDKRLKTCFEDFCFWESMLWhwgeknwtdnstastppppaitsaslss
kltgrnefqgigllnfndSEVDHWKQLIPDAEHVVLNLDHVSNDITWESLYPEWIDEEEEFEVPTCPSLPKLQVAGKPRIDLVAVKLPCIKLGTWSRDVARLHLQLEAARIASSSKGLHPVHVLLVTECFPIPNLFTCKDIVVREGNAWLYKPDLHRLREKLLlpvgscelavplkAKENFYSERARREAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDETISDYHRggleaagwkihtiqrirnpkaerdaynEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMPEITATGNNATLFNSGVMVVEPSNCTFQLLMDHIYEIESYNGGDQGYLNEIFTWWHRIPKHMNFLKHFWEGDEEEKKHMKIRLFGADPPILYVLHYLGNKPWLCFRDYDCNWNVDILQEFASDIAHKTWWKVHDAMPEHLQKFCLLRSKQKAALEWDRRQaekanytdghwkikiqDKRLKTCFEDFCFWESMLWHWGEKNWtdnstastppppaitsaslss
KLTGRNEFQGIGLLNFNDSEVDHWKQLIPDAEHVVLNLDHVSNDITWESLYPEWIDEEEEFEVPTCPSLPKLQVAGKPRIDLVAVKLPCIKLGTWSRDVARLHLQLEAARIASSSKGLHPVHVLLVTECFPIPNLFTCKDIVVREGNAWLYKPDLHRLREKLLLPVGSCELAVPLKAKENFYSERARREAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDETISDYHRGGLEAAGWKIHTIQRIRNPKAERDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMPEITATGNNATLFNSGVMVVEPSNCTFQLLMDHIYEIESYNGGDQGYLNEIFTWWHRIPKHMNFLKHFWEGDEEEKKHMKIRLFGADPPILYVLHYLGNKPWLCFRDYDCNWNVDILQEFASDIAHKTWWKVHDAMPEHLQKFCLLRSKQKAALEWDRRQAEKANYTDGHWKIKIQDKRLKTCFEDFCFWESMLWHWGEKNWTDNstastppppaitsaslss
*******FQGIGLLNFNDSEVDHWKQLIPDAEHVVLNLDHVSNDITWESLYPEWIDEEEEFEVPTCPSLPKLQVAGKPRIDLVAVKLPCIKLGTWSRDVARLHLQLEAARIASSSKGLHPVHVLLVTECFPIPNLFTCKDIVVREGNAWLYKPDLHRLREKLLLPVGSCELAVPLKAKENFYSERARREAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDETISDYHRGGLEAAGWKIHTIQRIRNPKAERDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMPEITATGNNATLFNSGVMVVEPSNCTFQLLMDHIYEIESYNGGDQGYLNEIFTWWHRIPKHMNFLKHFWEGDEEEKKHMKIRLFGADPPILYVLHYLGNKPWLCFRDYDCNWNVDILQEFASDIAHKTWWKVHDAMPEHLQKFCLLRSKQKAALEWDRRQAEKANYTDGHWKIKIQDKRLKTCFEDFCFWESMLWHWGEKNWT********************
***********GLLNFNDSEVDHWKQLIPDAEHVVLNLDHVSNDITWESLYPEWIDEEEEFEVPTCPSLPKLQVAGKPRIDLVAVKLPCIKLGTWSRDVARLHLQLEAARIASSSKGLHPVHVLLVTECFPIPNLFTCKDIVVREGNAWLYKPDLHRLREKLLLPVGSCELA*************ARREAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDETISDYHRGGLEAAGWKIHTIQRIRNPKAERDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMPEITATGNNATLFNSGVMVVEPSNCTFQLLMDHIYEIESYNGGDQGYLNEIFTWWHRIPKHMNFLKHFWEGDEEEKKHMKIRLFGADPPILYVLHYLGNKPWLCFRDYDCNWNVDILQEFASDIAHKTWWKVHDAMPE************************************IQDKRLKTCFEDFCFWESMLWHWGE************************
KLTGRNEFQGIGLLNFNDSEVDHWKQLIPDAEHVVLNLDHVSNDITWESLYPEWIDEEEEFEVPTCPSLPKLQVAGKPRIDLVAVKLPCIKLGTWSRDVARLHLQLEAARIASSSKGLHPVHVLLVTECFPIPNLFTCKDIVVREGNAWLYKPDLHRLREKLLLPVGSCELAVPLKAKENFYSERARREAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDETISDYHRGGLEAAGWKIHTIQRIRNPKAERDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMPEITATGNNATLFNSGVMVVEPSNCTFQLLMDHIYEIESYNGGDQGYLNEIFTWWHRIPKHMNFLKHFWEGDEEEKKHMKIRLFGADPPILYVLHYLGNKPWLCFRDYDCNWNVDILQEFASDIAHKTWWKVHDAMPEHLQKFCLLRSKQKAALEWDRRQAEKANYTDGHWKIKIQDKRLKTCFEDFCFWESMLWHWGEKNWTD*******************
*****NEFQGIGLLNFNDSEVDHWKQLIPDAEHVVLNLDHVSNDITWESLYPEWIDEEEEFEVPTCPSLPKLQVAGKPRIDLVAVKLPCIKLGTWSRDVARLHLQLEAARIASSSKGLHPVHVLLVTECFPIPNLFTCKDIVVREGNAWLYKPDLHRLREKLLLPVGSCELAVPLKAKE*****RARREAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDETISDYHRGGLEAAGWKIHTIQRIRNPKAERDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMPEITATGNNATLFNSGVMVVEPSNCTFQLLMDHIYEIESYNGGDQGYLNEIFTWWHRIPKHMNFLKHFWEGDEEEKKHMKIRLFGADPPILYVLHYLGNKPWLCFRDYDCNWNVDILQEFASDIAHKTWWKVHDAMPEHLQKFCLLRSKQKAALEWDRRQAEKANYTDGHWKIKIQDKRLKTCFEDFCFWESMLWHWGEKNWTDN****TPPP**********
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KLTGRNEFQGIGLLNFNDSEVDHWKQLIPDAEHVVLNLDHVSNDITWESLYPEWIDEEEEFEVPTCPSLPKLQVAGKPRIDLVAVKLPCIKLGTWSRDVARLHLQLEAARIASSSKGLHPVHVLLVTECFPIPNLFTCKDIVVREGNAWLYKPDLHRLREKLLLPVGSCELAVPLKAKENFYSERARREAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDETISDYHRGGLEAAGWKIHTIQRIRNPKAERDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMPEITATGNNATLFNSGVMVVEPSNCTFQLLMDHIYEIESYNGGDQGYLNEIFTWWHRIPKHMNFLKHFWEGDEEEKKHMKIRLFGADPPILYVLHYLGNKPWLCFRDYDCNWNVDILQEFASDIAHKTWWKVHDAMPEHLQKFCLLRSKQKAALEWDRRQAEKANYTDGHWKIKIQDKRLKTCFEDFCFWESMLWHWGEKNWTDNSTASTPPPPAITSASLSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query521 2.2.26 [Sep-21-2011]
Q8W4A7618 Putative UDP-glucuronate: yes no 0.948 0.799 0.804 0.0
Q9LSB1659 UDP-glucuronate:xylan alp no no 0.984 0.778 0.690 0.0
Q8GWW4596 UDP-glucuronate:xylan alp no no 0.898 0.785 0.496 1e-137
Q9FZ37557 Putative UDP-glucuronate: no no 0.863 0.807 0.447 1e-119
F4HZC3566 Putative UDP-glucuronate: no no 0.886 0.816 0.453 1e-118
Q8GWB7 537 Putative glucuronosyltran no no 0.337 0.327 0.365 1e-28
O15488 501 Glycogenin-2 OS=Homo sapi yes no 0.452 0.471 0.310 2e-20
P46976350 Glycogenin-1 OS=Homo sapi no no 0.397 0.591 0.319 3e-19
P13280333 Glycogenin-1 OS=Oryctolag yes no 0.397 0.621 0.319 3e-19
Q9R062333 Glycogenin-1 OS=Mus muscu yes no 0.397 0.621 0.315 6e-19
>sp|Q8W4A7|GUX3_ARATH Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 OS=Arabidopsis thaliana GN=GUX3 PE=2 SV=1 Back     alignment and function desciption
 Score =  850 bits (2197), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/496 (80%), Positives = 444/496 (89%), Gaps = 2/496 (0%)

Query: 4   GRNEFQGIGLLNFNDSEVDHWKQLI-PDAEHVVLNLDHVSNDITWESLYPEWIDEEEEFE 62
           GR+E+QGIGL+N ND+E+D +K++   D +HV L+LD+ + +ITWESLYPEWIDE EEFE
Sbjct: 99  GRSEYQGIGLINLNDNEIDRFKEVTKSDCDHVALHLDYAAKNITWESLYPEWIDEVEEFE 158

Query: 63  VPTCPSLPKLQVAGKPRIDLVAVKLPCIKLGTWSRDVARLHLQLEAARIASSSKGLHPVH 122
           VPTCPSLP +Q+ GKPRIDLV  KLPC K G WSRDVARLHLQL AAR+A+SSKGLH VH
Sbjct: 159 VPTCPSLPLIQIPGKPRIDLVIAKLPCDKSGKWSRDVARLHLQLAAARVAASSKGLHNVH 218

Query: 123 VLLVTECFPIPNLFTCKDIVVREGNAWLYKPDLHRLREKLLLPVGSCELAVPLKAKENFY 182
           V+LV++CFPIPNLFT +++V R+GN WLYKP+LH+LR+KL LPVGSCEL+VPL+AK+NFY
Sbjct: 219 VILVSDCFPIPNLFTGQELVARQGNIWLYKPNLHQLRQKLQLPVGSCELSVPLQAKDNFY 278

Query: 183 SERARREAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDETISDYHRGGLEAAGW 242
           S  A++EAYATILHSA  YVCGAIAAAQSIRM+GSTRDLVILVDETIS+YH+ GL AAGW
Sbjct: 279 SAGAKKEAYATILHSAQFYVCGAIAAAQSIRMSGSTRDLVILVDETISEYHKSGLVAAGW 338

Query: 243 KIHTIQRIRNPKAERDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMPEIT 302
           KI   QRIRNP A  +AYNEWNYSKFRLWQLT+Y KIIFIDAD+LILRNIDFLFE PEI+
Sbjct: 339 KIQMFQRIRNPNAVPNAYNEWNYSKFRLWQLTEYSKIIFIDADMLILRNIDFLFEFPEIS 398

Query: 303 ATGNNATLFNSGVMVVEPSNCTFQLLMDHIYEIESYNGGDQGYLNEIFTWWHRIPKHMNF 362
           ATGNNATLFNSG+MVVEPSN TFQLLMD+I E+ SYNGGDQGYLNEIFTWWHRIPKHMNF
Sbjct: 399 ATGNNATLFNSGLMVVEPSNSTFQLLMDNINEVVSYNGGDQGYLNEIFTWWHRIPKHMNF 458

Query: 363 LKHFWEGDEEEKKHMKIRLFGADPPILYVLHYLG-NKPWLCFRDYDCNWNVDILQEFASD 421
           LKHFWEGDE E K MK  LFGADPPILYVLHYLG NKPWLCFRDYDCNWNVDI QEFASD
Sbjct: 459 LKHFWEGDEPEIKKMKTSLFGADPPILYVLHYLGYNKPWLCFRDYDCNWNVDIFQEFASD 518

Query: 422 IAHKTWWKVHDAMPEHLQKFCLLRSKQKAALEWDRRQAEKANYTDGHWKIKIQDKRLKTC 481
            AHKTWW+VHDAMPE+L KFCLLRSKQKA LEWDRRQAEK NY DGHWKIKI+DKRLKTC
Sbjct: 519 EAHKTWWRVHDAMPENLHKFCLLRSKQKAQLEWDRRQAEKGNYKDGHWKIKIKDKRLKTC 578

Query: 482 FEDFCFWESMLWHWGE 497
           FEDFCFWESMLWHWGE
Sbjct: 579 FEDFCFWESMLWHWGE 594
May be involved in the substitutions of the xylan backbone in stem glucuronoxylan.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -
>sp|Q9LSB1|GUX1_ARATH UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 OS=Arabidopsis thaliana GN=GUX1 PE=2 SV=1 Back     alignment and function description
>sp|Q8GWW4|GUX2_ARATH UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 OS=Arabidopsis thaliana GN=GUX2 PE=2 SV=1 Back     alignment and function description
>sp|Q9FZ37|GUX4_ARATH Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4 OS=Arabidopsis thaliana GN=GUX4 PE=3 SV=1 Back     alignment and function description
>sp|F4HZC3|GUX5_ARATH Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 OS=Arabidopsis thaliana GN=GUX5 PE=2 SV=1 Back     alignment and function description
>sp|Q8GWB7|GUX6_ARATH Putative glucuronosyltransferase PGSIP6 OS=Arabidopsis thaliana GN=PGSIP6 PE=2 SV=1 Back     alignment and function description
>sp|O15488|GLYG2_HUMAN Glycogenin-2 OS=Homo sapiens GN=GYG2 PE=1 SV=2 Back     alignment and function description
>sp|P46976|GLYG_HUMAN Glycogenin-1 OS=Homo sapiens GN=GYG1 PE=1 SV=4 Back     alignment and function description
>sp|P13280|GLYG_RABIT Glycogenin-1 OS=Oryctolagus cuniculus GN=GYG1 PE=1 SV=3 Back     alignment and function description
>sp|Q9R062|GLYG_MOUSE Glycogenin-1 OS=Mus musculus GN=Gyg1 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query521
255570396 656 glycogenin, putative [Ricinus communis] 1.0 0.794 0.869 0.0
449462172 634 PREDICTED: putative UDP-glucuronate:xyla 0.963 0.791 0.868 0.0
449518380 634 PREDICTED: LOW QUALITY PROTEIN: putative 0.963 0.791 0.866 0.0
356577837 666 PREDICTED: uncharacterized protein LOC10 0.996 0.779 0.831 0.0
356499040 644 PREDICTED: uncharacterized protein LOC10 0.996 0.805 0.826 0.0
224085075 629 predicted protein [Populus trichocarpa] 0.998 0.826 0.846 0.0
359492313 637 PREDICTED: uncharacterized protein LOC10 0.955 0.781 0.858 0.0
22330689618 plant glycogenin-like starch initiation 0.948 0.799 0.804 0.0
3540195 1201 Unknown protein [Arabidopsis thaliana] 0.948 0.411 0.804 0.0
297842487618 hypothetical protein ARALYDRAFT_476876 [ 0.952 0.802 0.797 0.0
>gi|255570396|ref|XP_002526157.1| glycogenin, putative [Ricinus communis] gi|223534534|gb|EEF36233.1| glycogenin, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  945 bits (2442), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/523 (86%), Positives = 489/523 (93%), Gaps = 2/523 (0%)

Query: 1   KLTGRNEFQGIGLLNFNDSEVDHWKQLIPDAEHVVLNLDHVSNDITWESLYPEWIDEEEE 60
           KL   N +QGIGLLNFNDSE+D+WKQL+PD +HVVL+LDH++ DITWESLYPEWIDEEE+
Sbjct: 133 KLNDSNGYQGIGLLNFNDSEIDNWKQLLPDIDHVVLHLDHLAKDITWESLYPEWIDEEED 192

Query: 61  FEVPTCPSLPKLQVAGKPRIDLVAVKLPCIKLGTWSRDVARLHLQLEAARIASSSKGLHP 120
           FEVPTCPSLPKL+V GKPRID++AVKLPC K  +WSRDVARLHLQL AA +A+S K  HP
Sbjct: 193 FEVPTCPSLPKLKVPGKPRIDVIAVKLPCNKFKSWSRDVARLHLQLAAASLAASGKSYHP 252

Query: 121 VHVLLVTECFPIPNLFTCKDIVVREGNAWLYKPDLHRLREKLLLPVGSCELAVPLKAKEN 180
           V VLLVTECFP PNLFTCKD+++REGN WLY+P+L+RLREK+ LPVGSCELAVPLK+KEN
Sbjct: 253 VRVLLVTECFPAPNLFTCKDLILREGNLWLYEPNLNRLREKIQLPVGSCELAVPLKSKEN 312

Query: 181 FYSERARREAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDETISDYHRGGLEAA 240
           FYSERA REAYATILHSAHVYVCGAI AAQSIRMAGS RDLVILVDETIS+YHRGGLEAA
Sbjct: 313 FYSERANREAYATILHSAHVYVCGAITAAQSIRMAGSIRDLVILVDETISEYHRGGLEAA 372

Query: 241 GWKIHTIQRIRNPKAERDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMPE 300
           GWKIHTIQRIRNPKAERDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMPE
Sbjct: 373 GWKIHTIQRIRNPKAERDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMPE 432

Query: 301 ITATGNNATLFNSGVMVVEPSNCTFQLLMDHIYEIESYNGGDQGYLNEIFTWWHRIPKHM 360
           ITA GNNATLFNSGVMV+EPSNCTFQLLMDHI EIESYNGGDQGYLNEIFTWWHRIPKHM
Sbjct: 433 ITAIGNNATLFNSGVMVIEPSNCTFQLLMDHINEIESYNGGDQGYLNEIFTWWHRIPKHM 492

Query: 361 NFLKHFWEGDEEEKKHMKIRLFGADPPILYVLHYLGNKPWLCFRDYDCNWNVDILQEFAS 420
           NFLKHFWEGDEEEKK MK RLFGADPPILYV+HYLG KPWLCFRDYDCNWNVDILQEFAS
Sbjct: 493 NFLKHFWEGDEEEKKQMKTRLFGADPPILYVIHYLGYKPWLCFRDYDCNWNVDILQEFAS 552

Query: 421 DIAHKTWWKVHDAMPEHLQKFCLLRSKQKAALEWDRRQAEKANYTDGHWKIKIQDKRLKT 480
           D+AHKTWWKVHDAMPE+LQK+CLLRSKQKAALEWDRRQAEKANYTDGHWKIKIQDKRL+T
Sbjct: 553 DVAHKTWWKVHDAMPENLQKYCLLRSKQKAALEWDRRQAEKANYTDGHWKIKIQDKRLET 612

Query: 481 CFEDFCFWESMLWHWGEKNWTDNSTAS--TPPPPAITSASLSS 521
           CFEDFCFWESMLWHWGE NWTDN+T +   PPPPAI + SLS+
Sbjct: 613 CFEDFCFWESMLWHWGETNWTDNATVTPSPPPPPAIFTKSLST 655

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449462172|ref|XP_004148815.1| PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449518380|ref|XP_004166220.1| PREDICTED: LOW QUALITY PROTEIN: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356577837|ref|XP_003557028.1| PREDICTED: uncharacterized protein LOC100815759 [Glycine max] Back     alignment and taxonomy information
>gi|356499040|ref|XP_003518352.1| PREDICTED: uncharacterized protein LOC100787339 [Glycine max] Back     alignment and taxonomy information
>gi|224085075|ref|XP_002307480.1| predicted protein [Populus trichocarpa] gi|222856929|gb|EEE94476.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359492313|ref|XP_002278157.2| PREDICTED: uncharacterized protein LOC100245489 [Vitis vinifera] Back     alignment and taxonomy information
>gi|22330689|ref|NP_177838.2| plant glycogenin-like starch initiation protein 2 [Arabidopsis thaliana] gi|75162440|sp|Q8W4A7.1|GUX3_ARATH RecName: Full=Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3; Short=UDP-GlcA:xylan glucuronyltransferase 3; AltName: Full=Glycogenin-like protein 3; AltName: Full=Plant glycogenin-like starch initiation protein 2; AltName: Full=Protein GLUCURONIC ACID SUBSTITUTION OF XYLAN 3; Short=AtGUX3 gi|17065238|gb|AAL32773.1| Unknown protein [Arabidopsis thaliana] gi|21387185|gb|AAM47996.1| unknown protein [Arabidopsis thaliana] gi|332197818|gb|AEE35939.1| plant glycogenin-like starch initiation protein 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|3540195|gb|AAC34345.1| Unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297842487|ref|XP_002889125.1| hypothetical protein ARALYDRAFT_476876 [Arabidopsis lyrata subsp. lyrata] gi|297334966|gb|EFH65384.1| hypothetical protein ARALYDRAFT_476876 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query521
TAIR|locus:2196020618 PGSIP2 "plant glycogenin-like 0.959 0.809 0.800 8.4e-232
TAIR|locus:2094014659 PGSIP1 "plant glycogenin-like 0.950 0.751 0.701 2.3e-204
TAIR|locus:2036024566 PGSIP5 "plant glycogenin-like 0.673 0.620 0.491 2.2e-98
TAIR|locus:2011045557 PGSIP4 "AT1G54940" [Arabidopsi 0.671 0.628 0.481 4.7e-96
TAIR|locus:2146173 537 PGSIP6 "plant glycogenin-like 0.335 0.325 0.368 6.3e-27
UNIPROTKB|E1BYL9332 E1BYL9 "Uncharacterized protei 0.518 0.813 0.292 2.7e-23
UNIPROTKB|F6QLM5331 GYG1 "Uncharacterized protein" 0.474 0.746 0.301 3.3e-21
UNIPROTKB|F1PZU9478 GYG2 "Uncharacterized protein" 0.456 0.497 0.315 4.9e-21
WB|WBGene00012020300 gyg-2 [Caenorhabditis elegans 0.397 0.69 0.315 7e-21
UNIPROTKB|F1SKC4331 GYG1 "Uncharacterized protein" 0.476 0.749 0.295 1.2e-20
TAIR|locus:2196020 PGSIP2 "plant glycogenin-like starch initiation protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2236 (792.2 bits), Expect = 8.4e-232, P = 8.4e-232
 Identities = 402/502 (80%), Positives = 448/502 (89%)

Query:     4 GRNEFQGIGLLNFNDSEVDHWKQLIP-DAEHVVLNLDHVSNDITWESLYPEWIDEEEEFE 62
             GR+E+QGIGL+N ND+E+D +K++   D +HV L+LD+ + +ITWESLYPEWIDE EEFE
Sbjct:    99 GRSEYQGIGLINLNDNEIDRFKEVTKSDCDHVALHLDYAAKNITWESLYPEWIDEVEEFE 158

Query:    63 VPTCPSLPKLQVAGKPRIDLVAVKLPCIKLGTWSRDVARLHLQLEAARIASSSKGLHPVH 122
             VPTCPSLP +Q+ GKPRIDLV  KLPC K G WSRDVARLHLQL AAR+A+SSKGLH VH
Sbjct:   159 VPTCPSLPLIQIPGKPRIDLVIAKLPCDKSGKWSRDVARLHLQLAAARVAASSKGLHNVH 218

Query:   123 VLLVTECFPIPNLFTCKDIVVREGNAWLYKPDLHRLREKLLLPVGSCELAVPLKAKENFY 182
             V+LV++CFPIPNLFT +++V R+GN WLYKP+LH+LR+KL LPVGSCEL+VPL+AK+NFY
Sbjct:   219 VILVSDCFPIPNLFTGQELVARQGNIWLYKPNLHQLRQKLQLPVGSCELSVPLQAKDNFY 278

Query:   183 SERARREAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDETISDYHRGGLEAAGW 242
             S  A++EAYATILHSA  YVCGAIAAAQSIRM+GSTRDLVILVDETIS+YH+ GL AAGW
Sbjct:   279 SAGAKKEAYATILHSAQFYVCGAIAAAQSIRMSGSTRDLVILVDETISEYHKSGLVAAGW 338

Query:   243 KIHTIQRIRNPKAERDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMPEIT 302
             KI   QRIRNP A  +AYNEWNYSKFRLWQLT+Y KIIFIDAD+LILRNIDFLFE PEI+
Sbjct:   339 KIQMFQRIRNPNAVPNAYNEWNYSKFRLWQLTEYSKIIFIDADMLILRNIDFLFEFPEIS 398

Query:   303 ATGNNATLFNSGVMVVEPSNCTFQLLMDHIYEIESYNGGDQGYLNEIFTWWHRIPKHMNF 362
             ATGNNATLFNSG+MVVEPSN TFQLLMD+I E+ SYNGGDQGYLNEIFTWWHRIPKHMNF
Sbjct:   399 ATGNNATLFNSGLMVVEPSNSTFQLLMDNINEVVSYNGGDQGYLNEIFTWWHRIPKHMNF 458

Query:   363 LKHFWEGDEEEKKHMKIRLFGADPPILYVLHYLG-NKPWLCFRDYDCNWNVDILQEFASD 421
             LKHFWEGDE E K MK  LFGADPPILYVLHYLG NKPWLCFRDYDCNWNVDI QEFASD
Sbjct:   459 LKHFWEGDEPEIKKMKTSLFGADPPILYVLHYLGYNKPWLCFRDYDCNWNVDIFQEFASD 518

Query:   422 IAHKTWWKVHDAMPEHLQKFCLLRSKQKAALEWDRRQAEKANYTDGHWKIKIQDKRLKTC 481
              AHKTWW+VHDAMPE+L KFCLLRSKQKA LEWDRRQAEK NY DGHWKIKI+DKRLKTC
Sbjct:   519 EAHKTWWRVHDAMPENLHKFCLLRSKQKAQLEWDRRQAEKGNYKDGHWKIKIKDKRLKTC 578

Query:   482 FEDFCFWESMLWHWGEKNWTDN 503
             FEDFCFWESMLWHWGE N T+N
Sbjct:   579 FEDFCFWESMLWHWGETNSTNN 600
GO:0005739 "mitochondrion" evidence=ISM
GO:0009058 "biosynthetic process" evidence=ISS
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0009834 "secondary cell wall biogenesis" evidence=IGI
GO:0015020 "glucuronosyltransferase activity" evidence=IDA
GO:0045492 "xylan biosynthetic process" evidence=IGI;IDA
GO:0005768 "endosome" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
TAIR|locus:2094014 PGSIP1 "plant glycogenin-like starch initiation protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036024 PGSIP5 "plant glycogenin-like starch initiation protein 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011045 PGSIP4 "AT1G54940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2146173 PGSIP6 "plant glycogenin-like starch initiation protein 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1BYL9 E1BYL9 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F6QLM5 GYG1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PZU9 GYG2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
WB|WBGene00012020 gyg-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|F1SKC4 GYG1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8W4A7GUX3_ARATH2, ., 4, ., 1, ., -0.80440.94810.7993yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.1LOW CONFIDENCE prediction!
4th Layer2.4.1.186LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query521
cd02537240 cd02537, GT8_Glycogenin, Glycogenin belongs the GT 4e-71
pfam01501248 pfam01501, Glyco_transf_8, Glycosyl transferase fa 2e-38
cd06914278 cd06914, GT8_GNT1, GNT1 is a fungal enzyme that be 3e-16
PLN00176333 PLN00176, PLN00176, galactinol synthase 6e-15
cd00505246 cd00505, Glyco_transf_8, Members of glycosyltransf 4e-10
cd04194248 cd04194, GT8_A4GalT_like, A4GalT_like proteins cat 9e-10
COG5597368 COG5597, COG5597, Alpha-N-acetylglucosamine transf 1e-07
COG1442325 COG1442, RfaJ, Lipopolysaccharide biosynthesis pro 5e-07
>gnl|CDD|133018 cd02537, GT8_Glycogenin, Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information 
 Score =  226 bits (578), Expect = 4e-71
 Identities = 92/256 (35%), Positives = 136/256 (53%), Gaps = 26/256 (10%)

Query: 189 EAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDETISDYHRGGLEAAGWKIHTIQ 248
           EAY T+L +   Y+ GA+    S+R  GS+ DLV+LV   +S+  R  LE  GW +  ++
Sbjct: 1   EAYVTLLTNDD-YLPGALVLGYSLRKVGSSYDLVVLVTPGVSEESREALEEVGWIVREVE 59

Query: 249 RIRNPKAER---DAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMP-EITAT 304
            I  P +         +  Y+K RLW LT+YDK++F+DAD L+LRNID LF++P E  A 
Sbjct: 60  PIDPPDSANLLKRPRFKDTYTKLRLWNLTEYDKVVFLDADTLVLRNIDELFDLPGEFAAA 119

Query: 305 GNN--ATLFNSGVMVVEPSNCTFQLLMDHIYEIESYNGGDQGYLNEIFTW---WHRIPKH 359
            +     LFNSGV V++PS  TF  L+D + +  S++GGDQG LN  F+    W R+P  
Sbjct: 120 PDCGWPDLFNSGVFVLKPSEETFNDLLDALQDTPSFDGGDQGLLNSYFSDRGIWKRLPFT 179

Query: 360 MNFLKHFWEGDEEEKKHMKIRLFGADPPILYVLHYLG-NKPWLCFRDYDCNWNVDILQEF 418
            N LK       E                + V+H++G +KPW  +RD +     D  +  
Sbjct: 180 YNALKPLRYLHPEAL---------WFGDEIKVVHFIGGDKPWSWWRDPETKEKDDYNE-- 228

Query: 419 ASDIAHKTWWKVHDAM 434
                H+ WW ++D +
Sbjct: 229 ----LHQWWWDIYDEL 240

Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases. Length = 240
>gnl|CDD|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8 Back     alignment and domain information
>gnl|CDD|133064 cd06914, GT8_GNT1, GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information
>gnl|CDD|215090 PLN00176, PLN00176, galactinol synthase Back     alignment and domain information
>gnl|CDD|132996 cd00505, Glyco_transf_8, Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>gnl|CDD|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>gnl|CDD|227884 COG5597, COG5597, Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|224359 COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 521
PLN00176333 galactinol synthase 100.0
cd02537240 GT8_Glycogenin Glycogenin belongs the GT 8 family 100.0
cd06914278 GT8_GNT1 GNT1 is a fungal enzyme that belongs to t 100.0
cd00505246 Glyco_transf_8 Members of glycosyltransferase fami 99.98
cd04194248 GT8_A4GalT_like A4GalT_like proteins catalyze the 99.97
PF01501250 Glyco_transf_8: Glycosyl transferase family 8; Int 99.97
PRK15171334 lipopolysaccharide 1,3-galactosyltransferase; Prov 99.97
cd06429257 GT8_like_1 GT8_like_1 represents a subfamily of GT 99.95
COG1442325 RfaJ Lipopolysaccharide biosynthesis proteins, LPS 99.95
cd06431280 GT8_LARGE_C LARGE catalytic domain has closest hom 99.95
KOG1950369 consensus Glycosyl transferase, family 8 - glycoge 99.94
cd06430304 GT8_like_2 GT8_like_2 represents a subfamily of GT 99.89
cd06432248 GT8_HUGT1_C_like The C-terminal domain of HUGT1-li 99.88
PLN02523559 galacturonosyltransferase 99.87
PLN02718603 Probable galacturonosyltransferase 99.84
PLN02769629 Probable galacturonosyltransferase 99.82
PLN02659534 Probable galacturonosyltransferase 99.78
PLN02867535 Probable galacturonosyltransferase 99.78
PLN02870533 Probable galacturonosyltransferase 99.78
PLN02742534 Probable galacturonosyltransferase 99.76
PLN02829639 Probable galacturonosyltransferase 99.76
COG5597368 Alpha-N-acetylglucosamine transferase [Cell envelo 99.7
PLN02910657 polygalacturonate 4-alpha-galacturonosyltransferas 99.7
PF11051271 Mannosyl_trans3: Mannosyltransferase putative; Int 98.2
PF03407212 Nucleotid_trans: Nucleotide-diphospho-sugar transf 97.73
KOG18791470 consensus UDP-glucose:glycoprotein glucosyltransfe 95.88
PLN03182429 xyloglucan 6-xylosyltransferase; Provisional 94.35
KOG1928409 consensus Alpha-1,4-N-acetylglucosaminyltransferas 93.29
PF05637239 Glyco_transf_34: galactosyl transferase GMA12/MNN1 91.19
PLN03181453 glycosyltransferase; Provisional 90.79
>PLN00176 galactinol synthase Back     alignment and domain information 
Probab=100.00  E-value=6e-46  Score=382.98  Aligned_cols=235  Identities=28%  Similarity=0.514  Sum_probs=193.9

Q ss_pred             CCCCEEEEEEeecChhhHHHHHHHHHHHHHhCCCCcEEEEECCCCCHHHHHHHHHcCceEEEEeeecCCccccc---ccc
Q 043696          185 RARREAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDETISDYHRGGLEAAGWKIHTIQRIRNPKAERD---AYN  261 (521)
Q Consensus       185 ~~~r~AyVTlLt~dd~Yl~gA~VL~~SLr~~ns~~dlvVLvtd~Is~e~~~~Lk~~g~~v~~V~~I~~p~~~~~---~~~  261 (521)
                      ..+++||||+|+++++|++||+||++||+++++.+++|||+++++++++++.|++.|+.++.|+.+..+.....   .+.
T Consensus        19 ~~~~~AyVT~L~~n~~Y~~Ga~vL~~SLr~~~s~~~lVvlVt~dVp~e~r~~L~~~g~~V~~V~~i~~~~~~~~~~~~~~   98 (333)
T PLN00176         19 KPAKRAYVTFLAGNGDYVKGVVGLAKGLRKVKSAYPLVVAVLPDVPEEHRRILVSQGCIVREIEPVYPPENQTQFAMAYY   98 (333)
T ss_pred             ccCceEEEEEEecCcchHHHHHHHHHHHHHhCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEecccCCcccccccccchh
Confidence            46789999999988999999999999999999999999999999999999999999999999988865433211   122


Q ss_pred             hhhHHHHHHhccCCcceEEEeecCeeccCCchHhhcCCC--eeeecC---------------------------------
Q 043696          262 EWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMPE--ITATGN---------------------------------  306 (521)
Q Consensus       262 ~~ty~KL~lw~L~eYDRVLYLDaD~LVl~nLDeLF~~p~--iaAv~d---------------------------------  306 (521)
                      ..+|+||++|+|++||||||||+|+||++|||+||+++.  ++|+.+                                 
T Consensus        99 ~i~~tKl~iw~l~~ydkvlyLDaD~lv~~nid~Lf~~~~~~~aAV~dc~~~~~~~~~p~~~~~~c~~~~~~~~wp~~~g~  178 (333)
T PLN00176         99 VINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSHTPQYKIGYCQQCPDKVTWPAELGP  178 (333)
T ss_pred             hhhhhhhhhccccccceEEEecCCEEeecChHHHhcCCCcceEEEecccccccccccccccccccccchhhccchhhccC
Confidence            458999999999999999999999999999999999974  666543                                 


Q ss_pred             -CCCCccceEEEEecCHHHHHHHHHHHhhcCCCCCCchhHHHHhcc-cceecCCcccccccccCCChHHHHhhhhhcccC
Q 043696          307 -NATLFNSGVMVVEPSNCTFQLLMDHIYEIESYNGGDQGYLNEIFT-WWHRIPKHMNFLKHFWEGDEEEKKHMKIRLFGA  384 (521)
Q Consensus       307 -~~~yFNSGVMVInPs~~~f~~L~e~l~~~~sy~~~DQdiLN~vF~-~w~~LP~~YN~l~~~~~~~~~~~~~~k~~~f~~  384 (521)
                       ...|||||||||+|+..++++|++.+.....+.++|||+||.+|. +|++||.+||++........        +.+. 
T Consensus       179 ~~~~yFNSGVlvinps~~~~~~ll~~l~~~~~~~f~DQD~LN~~F~~~~~~Lp~~YN~~~~~~~~~~--------~~~~-  249 (333)
T PLN00176        179 PPPLYFNAGMFVFEPSLSTYEDLLETLKITPPTPFAEQDFLNMFFRDIYKPIPPVYNLVLAMLWRHP--------ENVE-  249 (333)
T ss_pred             CCCCeEEeEEEEEEcCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCcEEECCchhcCchhhhhhCh--------hhcc-
Confidence             124999999999999999999999987665678899999999999 89999999999875422111        1232 


Q ss_pred             CCCCeEEEEecC--CCCCCCCCCCCCCcccccchhccchhHHhHHHHHHhhhH
Q 043696          385 DPPILYVLHYLG--NKPWLCFRDYDCNWNVDILQEFASDIAHKTWWKVHDAMP  435 (521)
Q Consensus       385 ~~~~~~IIHY~G--~KPW~~~~~~d~nwn~~~~~~~~~d~~~~~WW~vyd~~p  435 (521)
                       .++++||||+|  .|||+.. ...+|++.++.     ...+++||++|++.-
T Consensus       250 -~~~vkIIHY~~~~~KPW~~~-~~~~~~~~~~~-----~~~~~~Ww~~~~~~~  295 (333)
T PLN00176        250 -LDKVKVVHYCAAGSKPWRYT-GKEENMDREDI-----KMLVKKWWDIYNDES  295 (333)
T ss_pred             -cCCcEEEEeeCCCCCCCCCC-CcccCCChHHH-----HHHHHHHHHHhcccc
Confidence             35799999995  7999854 44566654433     246899999998754

>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional Back     alignment and domain information
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis Back     alignment and domain information
>KOG1950 consensus Glycosyl transferase, family 8 - glycogenin [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family Back     alignment and domain information
>PLN02523 galacturonosyltransferase Back     alignment and domain information
>PLN02718 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02769 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02659 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02867 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02870 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02742 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02829 Probable galacturonosyltransferase Back     alignment and domain information
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase Back     alignment and domain information
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose Back     alignment and domain information
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [] Back     alignment and domain information
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional Back     alignment and domain information
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif Back     alignment and domain information
>PLN03181 glycosyltransferase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query521
3u2t_A284 Crystal Structure Of Human Glycogenin-1 (Gyg1) Comp 4e-22
1zcv_A353 Apo Form Of A Mutant Of Glycogenin In Which Asp159 8e-21
3t7m_A263 Crystal Structure Of Human Glycogenin-1 (Gyg1) Comp 2e-20
1ll0_A339 Crystal Structure Of Rabbit Muscle Glycogenin Lengt 2e-20
1ll2_A333 Crystal Structure Of Rabbit Muscle Glycogenin Compl 2e-20
3v8y_A291 Structure Of Apo-Glycogenin Truncated At Residue 27 2e-20
1zct_A290 Structure Of Glycogenin Truncated At Residue 270 In 2e-20
3q4s_A263 Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo 3e-20
3usr_A291 Structure Of Y194f Glycogenin Mutant Truncated At R 3e-20
1zcy_A353 Apo Form Of A Mutant Of Glycogenin In Which Asp159 3e-20
3usq_A291 Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED 3e-20
3rmw_A263 Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m 4e-20
3v90_A291 Structure Of T82m Glycogenin Mutant Truncated At Re 4e-20
1zcu_A353 Apo Form Of The 162s Mutant Of Glycogenin Length = 1e-19
>pdb|3U2T|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed With Manganese Length = 284 Back     alignment and structure 
Iteration: 1

 Score =  102 bits (255), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 112/234 (47%), Gaps = 15/234 (6%)
Query: 177 AKENFYSERARREAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDETISDYHRGG 236
             EN Y +    +A+ T L +   Y  GA+    S++   +TR LV+L    +SD  R  
Sbjct: 14  GTENLYFQSMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKV 72
Query: 237 LEAAGWKIHTIQRIRNPKAERDAYNE-----WNYSKFRLWQLTDYDKIIFIDADLLILRN 291
           LE    ++  +  + +  +      +        +K   W LT Y K +F+DAD L+L N
Sbjct: 73  LETVFDEVIMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLAN 132
Query: 292 IDFLFEMPEITATGNNA--TLFNSGVMVVEPSNCTFQLLMDHIYEIESYNGGDQGYLNEI 349
           ID LF+  E++A  +      FNSGV V +PS  T+  L+    E  S++GGDQG LN  
Sbjct: 133 IDDLFDREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTF 192
Query: 350 FTWWHR--IPKHMNFLKHFWEGDEEEKKHMKIRLFGADPPILYVLHYLGN-KPW 400
           F+ W    I KH+ F+ +              ++FGA      V+H+LG  KPW
Sbjct: 193 FSSWATTDIRKHLPFIYNL-SSISIYSYLPAFKVFGASAK---VVHFLGRVKPW 242
>pdb|1ZCV|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is Replaced By Asn Length = 353 Back     alignment and structure
>pdb|3T7M|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed With Manganese And Udp, In A Triclinic Closed Form Length = 263 Back     alignment and structure
>pdb|1LL0|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Length = 339 Back     alignment and structure
>pdb|1LL2|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Complexed With Udp- Glucose And Manganese Length = 333 Back     alignment and structure
>pdb|3V8Y|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270 Length = 291 Back     alignment and structure
>pdb|1ZCT|A Chain A, Structure Of Glycogenin Truncated At Residue 270 In A Complex With Udp Length = 290 Back     alignment and structure
>pdb|3Q4S|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo Form Length = 263 Back     alignment and structure
>pdb|3USR|A Chain A, Structure Of Y194f Glycogenin Mutant Truncated At Residue 270 Length = 291 Back     alignment and structure
>pdb|1ZCY|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is Replaced By Ser Length = 353 Back     alignment and structure
>pdb|3USQ|A Chain A, Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED AT RESIDUE 270 Length = 291 Back     alignment and structure
>pdb|3RMW|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant Complexed With Manganese And Udp-Glucose Length = 263 Back     alignment and structure
>pdb|3V90|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue 270 Length = 291 Back     alignment and structure
>pdb|1ZCU|A Chain A, Apo Form Of The 162s Mutant Of Glycogenin Length = 353 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query521
1ll2_A333 Glycogenin-1; protein-substrate complex, beta-alph 1e-53
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 6e-53
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 2e-13
3tzt_A276 Glycosyl transferase family 8; structural genomics 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Length = 333 Back     alignment and structure
 Score =  183 bits (465), Expect = 1e-53
 Identities = 80/290 (27%), Positives = 125/290 (43%), Gaps = 22/290 (7%)

Query: 188 REAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDETISDYHRGGLEAAGWKIHTI 247
            +A+ T+  +   Y  GA+    S++   ++R L +L    +SD  R  LE    ++ T+
Sbjct: 3   DQAFVTLTTNDA-YAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITV 61

Query: 248 QRIRNPKAE-----RDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMPEIT 302
             + +  +      +        +K   W LT Y K +F+DAD L+L NID LFE  E++
Sbjct: 62  DILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELS 121

Query: 303 ATGNN--ATLFNSGVMVVEPSNCTFQLLMDHIYEIESYNGGDQGYLNEIFTWWHRIP--K 358
           A  +      FNSGV V +PS  T+  L+    E  S++GGDQG LN  F  W      K
Sbjct: 122 AAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRK 181

Query: 359 HMNFLKHFWEGDEEEKKHMKIRLFGADPPILYVLHYLG-NKPWLCFRDYDCNWNVDILQE 417
           H+ F+ +              + FGA+     V+H+LG  KPW     YD        + 
Sbjct: 182 HLPFIYNLSSISIYSYLP-AFKAFGANA---KVVHFLGQTKPWNY--TYDTKTKSVRSEG 235

Query: 418 FASDIAH----KTWWKVH-DAMPEHLQKFCLLRSKQKAALEWDRRQAEKA 462
               + H      WW +   ++   LQ+F L++         D   A   
Sbjct: 236 HDPTMTHPQFLNVWWDIFTTSVVPLLQQFGLVQDTCSYQHVEDVSGAVSH 285
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Length = 263 Back     alignment and structure
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Length = 311 Back     alignment and structure
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} Length = 276 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query521
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 100.0
1ll2_A333 Glycogenin-1; protein-substrate complex, beta-alph 100.0
3tzt_A276 Glycosyl transferase family 8; structural genomics 100.0
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 99.97
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Back     alignment and structure
Probab=100.00  E-value=3.6e-43  Score=351.97  Aligned_cols=238  Identities=29%  Similarity=0.442  Sum_probs=188.9

Q ss_pred             CCCEEEEEEeecChhhHHHHHHHHHHHHHhCCCCcEEEEECCCCCHHHHHHHHHcCceEEEEeeecCCcccc-----ccc
Q 043696          186 ARREAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDETISDYHRGGLEAAGWKIHTIQRIRNPKAER-----DAY  260 (521)
Q Consensus       186 ~~r~AyVTlLt~dd~Yl~gA~VL~~SLr~~ns~~dlvVLvtd~Is~e~~~~Lk~~g~~v~~V~~I~~p~~~~-----~~~  260 (521)
                      ..++||||+++ |++|++||+||++||+++|++++++||++++++++.++.|++.|.+++.|+.+..+....     ...
T Consensus         2 ~~~~AyvTl~t-d~~Yl~ga~vL~~SL~~~~s~~~lvvLvt~~vs~~~~~~L~~~~~~vi~V~~l~~~~~~~~~~~~rp~   80 (263)
T 3u2u_A            2 MTDQAFVTLTT-NDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVDVLDSGDSAHLTLMKRPE   80 (263)
T ss_dssp             TTTEEEEEEES-SHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHSSEEEECCCCCCCCHHHHHHTTCTT
T ss_pred             CcceEEEEEEE-CHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHHcCCeEEEeeecCCcchhhhhhhcCcc
Confidence            45899999765 689999999999999999999999999999999999999999999999998876543211     111


Q ss_pred             chhhHHHHHHhccCCcceEEEeecCeeccCCchHhhcCCCeeeecCC--CCCccceEEEEecCHHHHHHHHHHHhhcCCC
Q 043696          261 NEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMPEITATGNN--ATLFNSGVMVVEPSNCTFQLLMDHIYEIESY  338 (521)
Q Consensus       261 ~~~ty~KL~lw~L~eYDRVLYLDaD~LVl~nLDeLF~~p~iaAv~d~--~~yFNSGVMVInPs~~~f~~L~e~l~~~~sy  338 (521)
                      ...+|+||++|++++||||||||+|++|++|||+||+++.++|++|.  +.|||||||||+|+..+++++++.+.+.+++
T Consensus        81 ~~~~~~kl~~~~l~~~~~vlylD~D~~v~~~~~~Lf~~~~~aA~~d~~~~~~fNsGv~li~p~~~~~~~l~~~~~~~~~~  160 (263)
T 3u2u_A           81 LGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSF  160 (263)
T ss_dssp             GGGGGGGGGGGGCTTCSEEEEECTTEEECSCCGGGGGSCSSEEEECTTSTTSEEEEEEEECCCHHHHHHHHHHHHHHCCT
T ss_pred             hhHHhHHHHhccccCcceEEEEcCCEeeccCHHHHhCCCcceEeccCCCCccccCeEEEEcccHHHHHHHHHHHHhcCCC
Confidence            13589999999999999999999999999999999999999999874  5899999999999999999999999887789


Q ss_pred             CCCchhHHHHhccc------ceecCCcccccccc-cCCChHHHHhhhhhcccCCCCCeEEEEecC-CCCCCCCCCCCCCc
Q 043696          339 NGGDQGYLNEIFTW------WHRIPKHMNFLKHF-WEGDEEEKKHMKIRLFGADPPILYVLHYLG-NKPWLCFRDYDCNW  410 (521)
Q Consensus       339 ~~~DQdiLN~vF~~------w~~LP~~YN~l~~~-~~~~~~~~~~~k~~~f~~~~~~~~IIHY~G-~KPW~~~~~~d~nw  410 (521)
                      .++|||+||.+|..      +++||.+||++... +...    +..  +.+   .++++||||+| .|||+........-
T Consensus       161 ~~~DQd~LN~~f~~w~~~~~~~~Lp~~yN~~~~~~y~~~----~~~--~~~---~~~~~IIHf~g~~KPW~~~~~~~~~~  231 (263)
T 3u2u_A          161 DGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYL----PAF--KVF---GASAKVVHFLGRVKPWNYTYDPKTKS  231 (263)
T ss_dssp             TSSHHHHHHHHTTTTTTSCGGGBCCGGGSEEHHHHHSSH----HHH--HHH---GGGCSEEECCSSSCGGGSEEETTTTE
T ss_pred             CcccHHHHHHHhccccccCeeEeCCcccccccchhcccc----HHH--Hhh---cCCeEEEEECCCCcCCCCCCCCCCCc
Confidence            99999999999984      47999999998742 2211    111  111   24689999999 99998642211000


Q ss_pred             ccccchhc--cchhHHhHHHHHHhh
Q 043696          411 NVDILQEF--ASDIAHKTWWKVHDA  433 (521)
Q Consensus       411 n~~~~~~~--~~d~~~~~WW~vyd~  433 (521)
                      -.......  ..+..-++||.+|++
T Consensus       232 ~~~~~~~~~~~~~~~~~~ww~~~~~  256 (263)
T 3u2u_A          232 VKSEAHDPNMTHPEFLILWWNIFTT  256 (263)
T ss_dssp             EECCSSCGGGSSTHHHHHHHHHHHH
T ss_pred             ccccCCCcchhHHHHHHHHHHHHHh
Confidence            00000000  125678999999986
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Back     alignment and structure
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0 Back     alignment and structure
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 521
d1ll2a_263 c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cun 6e-44
d1ga8a_282 c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseri 1e-16
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 263 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycogenin
domain: Glycogenin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  154 bits (389), Expect = 6e-44
 Identities = 73/258 (28%), Positives = 111/258 (43%), Gaps = 17/258 (6%)

Query: 189 EAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDETISDYHRGGLEAAGWKIHTIQ 248
           +A+ T+  +   Y  GA+    S++   ++R L +L    +SD  R  LE    ++ T+ 
Sbjct: 4   QAFVTLTTNDA-YAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 62

Query: 249 RIRNPKAERDAYNEWN-----YSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMPEITA 303
            + +  +      +        +K   W LT Y K +F+DAD L+L NID LFE  E++A
Sbjct: 63  ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 122

Query: 304 TG--NNATLFNSGVMVVEPSNCTFQLLMDHIYEIESYNGGDQGYLNEIFTWWHR--IPKH 359
                    FNSGV V +PS  T+  L+    E  S++GGDQG LN  F  W    I KH
Sbjct: 123 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKH 182

Query: 360 MNFLKHFWEGDEEEKKHMKIRLFGADPPILYVLHYLG-NKPWLCFRDYDCNWNVDILQEF 418
           + F+ +              + FGA+     V+H+LG  KPW    D           + 
Sbjct: 183 LPFIYNLSSISIYSYLP-AFKAFGANA---KVVHFLGQTKPWNYTYDTKTKSVRSEGHDP 238

Query: 419 ASDIA--HKTWWKVHDAM 434
                     WW +    
Sbjct: 239 TMTHPQFLNVWWDIFTTS 256
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Length = 282 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query521
d1ll2a_263 Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 100.0
d1ga8a_282 Galactosyltransferase LgtC {Neisseria meningitidis 99.98
d1o7qa_287 alpha-1,3-galactosyltransferase catalytic domain { 92.29
d1lzia_283 Glycosyltransferase A catalytic domain {Human (Hom 86.44
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycogenin
domain: Glycogenin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=1.3e-40  Score=326.58  Aligned_cols=242  Identities=29%  Similarity=0.416  Sum_probs=188.8

Q ss_pred             CCEEEEEEeecChhhHHHHHHHHHHHHHhCCCCcEEEEECCCCCHHHHHHHHHcCceEEEEeeecCCccc-----ccccc
Q 043696          187 RREAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDETISDYHRGGLEAAGWKIHTIQRIRNPKAE-----RDAYN  261 (521)
Q Consensus       187 ~r~AyVTlLt~dd~Yl~gA~VL~~SLr~~ns~~dlvVLvtd~Is~e~~~~Lk~~g~~v~~V~~I~~p~~~-----~~~~~  261 (521)
                      ...||||+++ |++|++||+|+++||+++++.++++||++++++++.++.|++.+.+++.++.+..+...     ...+.
T Consensus         2 ~~~A~vt~~t-~d~Yl~~a~vl~~SL~~~~~~~~~vvl~~~~i~~~~~~~L~~~~~~~~~v~~i~~~~~~~~~~~~~~~~   80 (263)
T d1ll2a_           2 TDQAFVTLTT-NDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPEL   80 (263)
T ss_dssp             CSEEEEEEES-SHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTTHHHHHHCGGG
T ss_pred             CccEEEEEEe-CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHhCCcceeEEeecCcchhhhhhhccccc
Confidence            3579999765 68999999999999999999999999999999999999999999999988877654322     12334


Q ss_pred             hhhHHHHHHhccCCcceEEEeecCeeccCCchHhhcCCCeeeecC--CCCCccceEEEEecCHHHHHHHHHHHhhcCCCC
Q 043696          262 EWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMPEITATGN--NATLFNSGVMVVEPSNCTFQLLMDHIYEIESYN  339 (521)
Q Consensus       262 ~~ty~KL~lw~L~eYDRVLYLDaD~LVl~nLDeLF~~p~iaAv~d--~~~yFNSGVMVInPs~~~f~~L~e~l~~~~sy~  339 (521)
                      ..+|+||++|+|++||||||||||+||++|||+||+.+.++|+++  ...+|||||||++|+..+++.|.+.+.+...+.
T Consensus        81 ~~ty~Kl~i~~l~~ydkvlYLDaD~lv~~~id~Lf~~~~~~a~~~~~~~~~~nsGv~l~~p~~~~~~~i~~~~~~~~~~~  160 (263)
T d1ll2a_          81 GVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFD  160 (263)
T ss_dssp             HHHHHHGGGGGCTTCSEEEEECTTEEECSCCGGGGGSCSSEEEECSSSTTSEEEEEEEECCCHHHHHHHHHHHHHTCCTT
T ss_pred             hhhhHHHHHhhhcccceEEEeCCCEEEecCHHHHhcCCccceeccCCCcccccCCcEEECccHHHHHHHHHHHHhhCCCC
Confidence            468999999999999999999999999999999999999888876  468999999999999999999999988877888


Q ss_pred             CCchhHHHHhcc------cceecCCcccccccccCCChHHHHhhhhhcccCCCCCeEEEEecC-CCCCCCCCCCCCCccc
Q 043696          340 GGDQGYLNEIFT------WWHRIPKHMNFLKHFWEGDEEEKKHMKIRLFGADPPILYVLHYLG-NKPWLCFRDYDCNWNV  412 (521)
Q Consensus       340 ~~DQdiLN~vF~------~w~~LP~~YN~l~~~~~~~~~~~~~~k~~~f~~~~~~~~IIHY~G-~KPW~~~~~~d~nwn~  412 (521)
                      ++||+++|..|.      .|..||..||+..........        .+.....+++||||+| .|||+...........
T Consensus       161 ~~dq~~ln~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~iIHf~g~~KPW~~~~~~~~~~~~  232 (263)
T d1ll2a_         161 GGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLP--------AFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVR  232 (263)
T ss_dssp             SSHHHHHHHHTTTTTTSCGGGBCCGGGSEETTHHHHTHH--------HHHHHGGGCSEEECCSSCCGGGSCEETTTTEEC
T ss_pred             hhhhhHHHHHHHhhhccCcccccCHHHhhhhhhhhhhhH--------hHHhhcCCeEEEEeCCCCCCCCCCCCCCccccc
Confidence            999999999996      466788888876532110000        0111124689999999 8999875321111110


Q ss_pred             ccc--hhccchhHHhHHHHHHhhhHHH
Q 043696          413 DIL--QEFASDIAHKTWWKVHDAMPEH  437 (521)
Q Consensus       413 ~~~--~~~~~d~~~~~WW~vyd~~p~~  437 (521)
                      ...  .......+++.||++|++.-..
T Consensus       233 ~~~~~~~~~~~~l~~~Ww~~~~~~~~~  259 (263)
T d1ll2a_         233 SEGHDPTMTHPQFLNVWWDIFTTSVVP  259 (263)
T ss_dssp             --------CCHHHHHHHHHHHHHTHHH
T ss_pred             cchhhccccHHHHHHHHHHHHhccccc
Confidence            111  1122446899999999986543
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure