Citrus Sinensis ID: 043707

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------
Protein Sequence
MTNEGGGAIVVKPNNNLHRPKFGSFLYPESVIFSPRNNNNQDDGDYYSGHPKSSASSTSPRYNNNSGTRTPTSGEASPYLMSPWNNQPVSPYTKSPWLMPPYSPNENLLSSCNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL
Secondary Structure (PSIPRED)
cccccccEEEEEccccEEccccccEEccEEEEEcccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEcccccccEEEccccccccEEEcccccEEEEEcccccEEEEEEcccEEEEEcccccEEEEccccccEEEEcccccEEEEEEcccccEEEEEcccccEEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEcccccEEEEEEccccEEEEccccccEEEEEccccccccccccccccccccccEEEEEEcccccEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEcccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEccccccccccccccccccEEEccccEEEEEEcccccEEEEcccccEEEEEccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccccccEEEEEcccccccEEEEEEcccccEEEEEccccc
Coil and Loop (DISEMBL)
mtnegggaivvkpnnnlhrpkfgsflypesvifsprnnnnqddgdyysghpkssasstsprynnnsgtrtptsgeaspylmspwnnqpvspytkspwlmppyspnenllsSCNGLIGsivrkeghiyslaasgdllytgsdskniRVWKNLKEfsgfksnsgLVKAIIItgdsnkiftghqdgkiriwkvsrknpsvhkrvgslptfkdyvkssvnpknyvEVRRNRNVLKIRHYDAVSCLslnaeqgllysgswdktlkvwrisdckclesinahdDAINSVVAGFDSlvftgsadgTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL
Flexible Loop (DISEMBL)
mtnegggaivvkpnnnlhrPKFGSFLYPESVIFSPRNNNNQDDGDYYSGHPKssasstsprynnnsGTRTPTSGEASPYLMSPWNNQPVSPYTKSPWLMPPYSPNENLLSSCNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKefsgfksnsGLVKAIIItgdsnkiftghqdgkiriwkvsrknpsvhkrvgslptfkdyvkssvnpknyvevrrnrnvlkiRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL
Low Complexity Region (SEG)
MTNEGGGAIVVKPNNNLHRPKFGSFLYPESVIFSPRNNNNQDDGDYYSGHPKSSASSTSPRYNNNSGTRTPTSGEASPYLMSPWNNQPVSPYTKSPWLMPPYSPNENLLSSCNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL
Disordered region (IsUnstruct)
*****************HRPKFGSFLYPESVIF***************************************************************WLM**Y**NENLLSSCNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYC******
Disordered Region (DISOPRED)
******G**VVKPNNNLHRPKFGSFLYPESVIFSPR*************************************GEASPYLMSPWN**********PWLMPPYSPNENLLSSCNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL
Disordered Region (DISEMBL)
MTNEGGGAIVVKPNNNLHRPKFGSFLYPESVIFSPRNNNNQDDGDYY****************************ASPYLMSPWNNQPVSPYTKSPWLMPPYSPNENLLSSCNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL
Disordered Region (DISPRO)
*******AI****NNNLHRPKFGSFLYP******************************************PTSGEASPYLMSPWNNQPVSPYTKSPWLMPPYSPNENLLSSCNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTNEGGGAIVVKPNNNLHRPKFGSFLYPESVIFSPRNNNNQDDGDYYSGHPKSSASSTSPRYNNNSGTRTPTSGEASPYLMSPWNNQPVSPYTKSPWLMPPYSPNENLLSSCNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	347	2.2.26 [Sep-21-2011]
P90648	732	Myosin heavy chain kinase	yes	no	0.536	0.254	0.275	3e-11
O24456	327	Guanine nucleotide-bindin	no	no	0.484	0.513	0.269	1e-10
Q39836	325	Guanine nucleotide-bindin	no	no	0.484	0.516	0.257	1e-10
A8X8C6	368	WD repeat-containing prot	N/A	no	0.510	0.480	0.264	1e-10
Q8N136	415	Outer row dynein assembly	yes	no	0.619	0.518	0.266	1e-10
O24076	325	Guanine nucleotide-bindin	N/A	no	0.478	0.510	0.270	2e-10
P49695	742	Probable serine/threonine	yes	no	0.608	0.284	0.237	1e-09
Q9C4Z6	326	Guanine nucleotide-bindin	no	no	0.481	0.512	0.266	1e-09
P87053	605	F-box/WD repeat-containin	yes	no	0.651	0.373	0.273	2e-09
Q8BG40	658	Katanin p80 WD40 repeat-c	yes	no	0.645	0.340	0.248	3e-09

>sp|P90648|MHCKB_DICDI Myosin heavy chain kinase B OS=Dictyostelium discoideum GN=mhkB PE=2 SV=1

 Score = 69.7 bits (169), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 102/236 (43%), Gaps = 50/236 (21%)

Query: 116 IGSIVRKEGH---IYSLAASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIIT 170
           +  I   EGH   ++++  +   L++GS  K I+VW  K L+     +S++  VK + I+
Sbjct: 532 LRCIFTLEGHDKPVHTVLLNDKYLFSGSSDKTIKVWDLKTLECKYTLESHARAVKTLCIS 591

Query: 171 GDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVL 230
           G    +F+G  D  I++W               L TF+          NY      + V 
Sbjct: 592 G--QYLFSGSNDKTIKVW--------------DLKTFR---------CNYTLKGHTKWVT 626

Query: 231 KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSL 290
            I        L  N     LYSGS+DKT++VW +   +C  ++  HD  +  +V   D L
Sbjct: 627 TI------CILGTN-----LYSGSYDKTIRVWNLKSLECSATLRGHDRWVEHMVIC-DKL 674

Query: 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENA-ITALAVNQESAVVYCGSSD 345
           +FT S D T+K+W  E              L+  NA +  LAV ++   V   S D
Sbjct: 675 LFTASDDNTIKIWDLET-------LRCNTTLEGHNATVQCLAVWEDKKCVISCSHD 723

Phosphorylates threonine in the C-terminal tail region of myosin II heavy chain. This phosphorylation is critical in regulating the assembly and disassembly of myosin II filament.
Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 7

>sp|O24456|GBLPA_ARATH Guanine nucleotide-binding protein subunit beta-like protein A OS=Arabidopsis thaliana GN=RACK1A PE=1 SV=2

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 91/197 (46%), Gaps = 29/197 (14%)

Query: 133 GDLLYTGSDSKNIRVWKNLKEFSGF-------KSNSGLVKAIIITGDSNKIFTGHQDGKI 185
            D++ + S  K+I +WK  K+   +         +S  V+ ++++ D     +G  DG++
Sbjct: 28  ADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL 87

Query: 186 RIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIR------------ 233
           R+W ++    S  + VG        V  S++ +  V   R+R + K+             
Sbjct: 88  RLWDLA-AGVSTRRFVGHTKDVLS-VAFSLDNRQIVSASRDRTI-KLWNTLGECKYTISE 144

Query: 234 ----HYDAVSCLSL--NAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGF 287
               H D VSC+    N  Q  + S SWDKT+KVW +S+CK   ++  H   +++V    
Sbjct: 145 GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP 204

Query: 288 D-SLVFTGSADGTVKVW 303
           D SL  +G  DG V +W
Sbjct: 205 DGSLCASGGKDGVVLLW 221

Major component of the RACK1 regulatory proteins that play a role in multiple signal transduction pathways. Involved in multiple hormone responses and developmental processes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39836|GBLP_SOYBN Guanine nucleotide-binding protein subunit beta-like protein OS=Glycine max PE=2 SV=1

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 91/194 (46%), Gaps = 26/194 (13%)

Query: 134 DLLYTGSDSKNIRVWKNLKEFSGF-------KSNSGLVKAIIITGDSNKIFTGHQDGKIR 186
           D++ T S  ++I +W   KE   +         +S  V+ ++++ D     +G  DG++R
Sbjct: 29  DMIVTASRDRSIILWHLTKEDKTYGVPRRRLTGHSHFVQDVVLSSDGQFALSGSWDGELR 88

Query: 187 IWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNV----------LKIR--- 233
           +W ++    S  + VG        V  S++ +  V   R+R +            I+   
Sbjct: 89  LWDLA-AGTSARRFVGHTKDVLS-VAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQDGD 146

Query: 234 -HYDAVSCLSLNAE--QGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-S 289
            H D VSC+  +    Q  + S SWD+T+KVW +++CK   ++  H+  +N+V    D S
Sbjct: 147 AHSDWVSCVRFSPSTLQPTIVSASWDRTVKVWNLTNCKLRNTLAGHNGYVNTVAVSPDGS 206

Query: 290 LVFTGSADGTVKVW 303
           L  +G  DG + +W
Sbjct: 207 LCASGGKDGVILLW 220

Glycine max (taxid: 3847)

>sp|A8X8C6|TG125_CAEBR WD repeat-containing protein tag-125 OS=Caenorhabditis briggsae GN=tag-125 PE=4 SV=1

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 100/223 (44%), Gaps = 46/223 (20%)

Query: 91  PYTKSPWLMPPYSPNENLLSSCN-GLIGSIVRKEGHIYSLAA-----SGDLLYTGSDSKN 144
           P T  P    P +  E+ +      LI +I   EGH  S++A      G  L T S  K 
Sbjct: 46  PITAVPEATAPTTSQESTIPGAGYKLISTI---EGHTKSISAVKFSPCGKFLGTSSADKT 102

Query: 145 IRVWKNLKEFSGFKSNSGL---VKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRV 201
           +++W N+ + S  ++ +G    V     + DS  I T   D  ++I++V           
Sbjct: 103 VKIW-NMSDLSCERTLTGHKLGVNDFAWSADSKSIVTASDDKTLKIYEV----------- 150

Query: 202 GSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKV 261
              PT K                     LK  H + V C + N +  L+ SGS+D+++++
Sbjct: 151 ---PTVK-----------------MAKTLK-GHTNYVFCCNFNPQSSLVVSGSFDESVRI 189

Query: 262 WRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVW 303
           W +    C++++ AH D +++V    D SL+ +GS DG V++W
Sbjct: 190 WDVRTGMCVKTLPAHSDPVSAVSFNRDGSLITSGSYDGLVRIW 232

Caenorhabditis briggsae (taxid: 6238)

>sp|Q8N136|WDR69_HUMAN Outer row dynein assembly protein 16 homolog OS=Homo sapiens GN=WDR69 PE=1 SV=1

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 112/244 (45%), Gaps = 29/244 (11%)

Query: 123 EGH---IYSLAAS---GDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIITGDSN 174
           EGH   +Y++A +   GD + TGS  K  ++W  +  K +  F+ ++  +  +     S 
Sbjct: 131 EGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQST 190

Query: 175 KIFTGHQDGKIRIWKVSRKNPSVHKRVG--------SLPTFKDYVKSSVNPKNYV----E 222
            + TG  D   ++W + +    V+   G        S  T  D + +       V    +
Sbjct: 191 LVATGSMDTTAKLWDI-QNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDAD 249

Query: 223 VRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAI-N 281
             R  N+L I H   +S  S N +  L+ +GS DKT K+W  ++ KC+ ++  HDD I +
Sbjct: 250 TGRKVNIL-IGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEILD 308

Query: 282 SVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYC 341
           S       L+ T SADGT +++        T+  +A+ L   E  I+ ++ N +   +  
Sbjct: 309 SCFDYTGKLIATASADGTARIF-----SAATRKCIAK-LEGHEGEISKISFNPQGNHLLT 362

Query: 342 GSSD 345
           GSSD
Sbjct: 363 GSSD 366

May play a role in axonemal outer row dynein assembly.

Homo sapiens (taxid: 9606)

>sp|O24076|GBLP_MEDSA Guanine nucleotide-binding protein subunit beta-like protein OS=Medicago sativa GN=GB1 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 92/196 (46%), Gaps = 30/196 (15%)

Query: 134 DLLYTGSDSKNIRVWKNLKEFSGF-------KSNSGLVKAIIITGDSNKIFTGHQDGKIR 186
           D++ T S  K+I +W   KE   +         +S  V+ ++++ D     +G  DG++R
Sbjct: 29  DMIVTASRDKSIILWHLTKEDKTYGVPRRRLTGHSHFVQDVVLSSDGQFALSGSWDGELR 88

Query: 187 IWKVSRKNPSVHKRVGSLPTFKDY--VKSSVNPKNYVEVRRNRNV----------LKIR- 233
           +W ++    S  + VG     KD   V  S++ +  V   R+R +            I+ 
Sbjct: 89  LWDLN-AGTSARRFVGHT---KDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQD 144

Query: 234 ---HYDAVSCLSLN--AEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD 288
              H D VSC+  +    Q  + S SWD+T+KVW +++CK   ++  H   +N+V    D
Sbjct: 145 GDAHSDWVSCVRFSPSTPQPTIVSASWDRTVKVWNLTNCKLRNTLAGHSGYVNTVAVSPD 204

Query: 289 -SLVFTGSADGTVKVW 303
            SL  +G  DG + +W
Sbjct: 205 GSLCASGGKDGVILLW 220

Plays a role in hormone-mediated cell division.

Medicago sativa (taxid: 3879)

>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1

 Score = 64.7 bits (156), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 107/248 (43%), Gaps = 37/248 (14%)

Query: 123 EGHI-----YSLAASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIITGDSNK 175
           EGH       + +  G LL +GSD   +R+W     +E + F+ ++  V  I  + D + 
Sbjct: 498 EGHTDWVRAVAFSPDGALLASGSDDATVRLWDVAAAEERAVFEGHTHYVLDIAFSPDGSM 557

Query: 176 IFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKS-SVNPKNY-------------- 220
           + +G +DG  R+W V+            L    DYV + + +P                 
Sbjct: 558 VASGSRDGTARLWNVATGT-----EHAVLKGHTDYVYAVAFSPDGSMVASGSRDGTIRLW 612

Query: 221 -VEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDA 279
            V   + R+VL+    + VS L+ + +  +L  GS D T+ +W ++  + L +   H D 
Sbjct: 613 DVATGKERDVLQAPAENVVS-LAFSPDGSMLVHGS-DSTVHLWDVASGEALHTFEGHTDW 670

Query: 280 INSVVAGFD-SLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAV 338
           + +V    D +L+ +GS D T+++W    Q + T       L      + ++A + E   
Sbjct: 671 VRAVAFSPDGALLASGSDDRTIRLWDVAAQEEHT------TLEGHTEPVHSVAFHPEGTT 724

Query: 339 VYCGSSDG 346
           +   S DG
Sbjct: 725 LASASEDG 732

May play a regulatory role during the complex growth cycle and in secondary metabolite production.

Thermomonospora curvata (taxid: 2020)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C4Z6|GPLPB_ARATH Guanine nucleotide-binding protein subunit beta-like protein B OS=Arabidopsis thaliana GN=RACK1B PE=2 SV=1

 Score = 64.7 bits (156), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 88/195 (45%), Gaps = 28/195 (14%)

Query: 134 DLLYTGSDSKNIRVWKNLKEFSGF-------KSNSGLVKAIIITGDSNKIFTGHQDGKIR 186
           D++ T S  K+I +WK  KE   +         +S  V+ ++++ D     +G  DG++R
Sbjct: 29  DVIVTSSRDKSIILWKLTKEDKSYGVAQRRMTGHSHFVQDVVLSSDGQFALSGSWDGELR 88

Query: 187 IWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIR------------- 233
           +W ++    S  + VG        V  S + +  V   R+R + K+              
Sbjct: 89  LWDLA-TGESTRRFVGHTKDVLS-VAFSTDNRQIVSASRDRTI-KLWNTLGECKYTISEA 145

Query: 234 --HYDAVSCLSL--NAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD- 288
             H + VSC+    N     + S SWDKT+KVW + +CK   ++  H   +N+V    D 
Sbjct: 146 DGHKEWVSCVRFSPNTLVPTIVSASWDKTVKVWNLQNCKLRNTLAGHSGYLNTVAVSPDG 205

Query: 289 SLVFTGSADGTVKVW 303
           SL  +G  DG + +W
Sbjct: 206 SLCASGGKDGVILLW 220

Minor component of the RACK1 regulatory proteins that play a role in multiple signal transduction pathways. Involved in multiple hormone responses and developmental processes.

Arabidopsis thaliana (taxid: 3702)

>sp|P87053|POF1_SCHPO F-box/WD repeat-containing protein pof1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pof1 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 110/249 (44%), Gaps = 23/249 (9%)

Query: 87  QPVSPYTKSPWLMP----PYSP--NENLLSSCNGLIGSI--VRKEGH---IYSLAASGDL 135
           +P SP + S + +P    P+     E     CN   G    V   GH   +  L    ++
Sbjct: 226 KPPSPNSDSKFFLPFKTRPWKEVYAERCRVECNWRHGRCRQVVLSGHSDGVMCLQLVRNI 285

Query: 136 LYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAI-IITGDSNKIFTGHQDGKIRIW--KVSR 192
           L +GS    IR+W NL  F       G    +  +  D  K+ +G  D  IRIW  + S 
Sbjct: 286 LASGSYDATIRLW-NLATFQQVALLEGHSSGVTCLQFDQCKLISGSMDKTIRIWNYRTSE 344

Query: 193 KNPSVHKRVGSLP--TFKDYVKSSVNPKNYVEVRR---NRNVLKIRHYDAVSCLSLNAEQ 247
               +H    S+   TF   +  S +    V++      + +    H   V+ + +  ++
Sbjct: 345 CISILHGHTDSVLCLTFDSTLLVSGSADCTVKLWHFSGGKRITLRGHTGPVNSVRIIRDR 404

Query: 248 GLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRREL 307
           GL+ SGS D T+K+W +    CL + +AH   + S +A  DS +F+ S DGT+K W  ++
Sbjct: 405 GLVLSGSDDSTIKIWSLETNTCLHTFSAHIGPVQS-LALADSRLFSCSLDGTIKQW--DI 461

Query: 308 QGKGTKHFL 316
           + K   H L
Sbjct: 462 EKKKCVHTL 470

Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation. Required for the inactivation of zip1 via ubiquitination.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8BG40|KTNB1_MOUSE Katanin p80 WD40 repeat-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 105/250 (42%), Gaps = 26/250 (10%)

Query: 116 IGSIVRKEGHIYSLA---ASGDLLYTGSDSKNIRVWKNLKE--FSGFKSNSGLVKAIIIT 170
           +  IV    ++ SL    ASG LL TG D   + +W   K         ++  V+++ + 
Sbjct: 13  LQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLN 72

Query: 171 GDSNKIFTGHQDGKIRIW-----KVSRKNPSVHKRVGSLP--TFKDYVKSSVNPKNYV-- 221
                I  G Q G IR+W     K+ R        + SL    + ++V S     N    
Sbjct: 73  TPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLW 132

Query: 222 EVRRNRNVLKIR-HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAI 280
           ++RR   V + R H  AV CL  + +   L S + D T+K+W ++  K +     H   +
Sbjct: 133 DIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPV 192

Query: 281 NSVVAGF---DSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESA 337
           N  V  F   + L+ +GS+D T++ W  E      K  +   +  +   + ++  N +  
Sbjct: 193 N--VVEFHPNEYLLASGSSDRTIRFWDLE------KFQVVSCIEGEPGPVRSVLFNPDGC 244

Query: 338 VVYCGSSDGL 347
            +Y G  D L
Sbjct: 245 CLYSGCQDSL 254

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	347
255556177	448	F-box and wd40 domain protein, putative	0.927	0.718	0.719	1e-135
224103489	424	predicted protein [Populus trichocarpa]	0.910	0.745	0.728	1e-130
449438707	467	PREDICTED: uncharacterized WD repeat-con	0.939	0.698	0.672	1e-127
224123228	417	predicted protein [Populus trichocarpa]	0.904	0.752	0.698	1e-126
225428610	445	PREDICTED: vegetative incompatibility pr	0.910	0.710	0.64	1e-118
225468903	451	PREDICTED: uncharacterized WD repeat-con	0.878	0.676	0.632	1e-113
147794784	511	hypothetical protein VITISV_002364 [Viti	0.878	0.596	0.632	1e-113
15230244	473	transducin/WD40 domain-containing protei	0.933	0.684	0.605	1e-113
15235354	495	transducin/WD40 domain-containing protei	0.942	0.660	0.626	1e-112
102139859	465	WD-40 repeat family protein [Musa acumin	0.795	0.593	0.675	1e-110

>gi|255556177|ref|XP_002519123.1| F-box and wd40 domain protein, putative [Ricinus communis] gi|223541786|gb|EEF43334.1| F-box and wd40 domain protein, putative [Ricinus communis]

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 244/339 (71%), Positives = 280/339 (82%), Gaps = 17/339 (5%)

Query: 9   IVVKPNNNLHRPKFGSFLYPESVIFSPRNNNNQDDGDYYSGHPKSSASSTSPRYNNNSGT 68
           +V +   +L+RPKFG+ L+ E  IF  + + N   G           S  SPRY+N+S T
Sbjct: 11  VVAERKGSLNRPKFGALLHAEPAIFPKQEDENSSPG-----------SLASPRYSNSS-T 58

Query: 69  RTPTSGEASPYLMSPWNNQPVSPYTKSPWLMPPYSPNENLLSSCNGLIGSIVRKEGHIYS 128
            T   GE SPYLMSP  +QP SPYTKSPWL+P    N NL  S +GL+GSIVR+EGH+YS
Sbjct: 59  ATSGEGEGSPYLMSPSWSQP-SPYTKSPWLIPSPIVNHNL--SNHGLVGSIVREEGHVYS 115

Query: 129 LAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW 188
           LAASG+LLYTGSDSKNIRVW+N+KEFSGFKSNSGLVKAI+I GD  +IFTGH+DGKIRIW
Sbjct: 116 LAASGELLYTGSDSKNIRVWRNMKEFSGFKSNSGLVKAIVILGD--RIFTGHRDGKIRIW 173

Query: 189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQG 248
           K+S KNPSVHKR+G LPTF+DY+  SVNPKNYVEVRR+RNVL+I+H+DAVSCLSLN EQG
Sbjct: 174 KISAKNPSVHKRIGGLPTFRDYITKSVNPKNYVEVRRHRNVLRIKHFDAVSCLSLNQEQG 233

Query: 249 LLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQ 308
           LLYSGSWDKTLK+WRISD KCLESINAH+DAINSV  GFDSLVFTGSADGTVK+W+RELQ
Sbjct: 234 LLYSGSWDKTLKIWRISDYKCLESINAHEDAINSVAVGFDSLVFTGSADGTVKIWKRELQ 293

Query: 309 GKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
           G+GTKHFL Q LLKQENA+TALAVN ESAVVYCGSSDGL
Sbjct: 294 GRGTKHFLVQTLLKQENAVTALAVNLESAVVYCGSSDGL 332

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103489|ref|XP_002313076.1| predicted protein [Populus trichocarpa] gi|222849484|gb|EEE87031.1| predicted protein [Populus trichocarpa]

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 242/332 (72%), Positives = 276/332 (83%), Gaps = 16/332 (4%)

Query: 16  NLHRPKFGSFLYPESVIFSPRNNNNQDDGDYYSGHPKSSASSTSPRYNNNSGTRTPTSGE 75
           ++HRP FGS L+ +   FS     NQ++ D  S     ++S+ SPRY N S   TP SGE
Sbjct: 6   SIHRPTFGSLLHSDPAFFS-----NQEEVDDSSNKNSPTSSNMSPRYYNGS---TPPSGE 57

Query: 76  ASPYLMSPWNNQPVSPYTKSPWLMPPYSPNENLLSSCNGLIGSIVRKEGHIYSLAASGDL 135
            SPYL SPWN QP SPYTKSPW++P  SP  +  S  NGL+GS+ R+EGH+YSLAASGDL
Sbjct: 58  GSPYL-SPWN-QP-SPYTKSPWVIP--SPVNHSFSK-NGLVGSLAREEGHVYSLAASGDL 111

Query: 136 LYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNP 195
           L+TGSDSKNIRVW NLKEF+GFKSNSGLVKAI+I GD  KIFTGHQDGKIR+W+ S +NP
Sbjct: 112 LFTGSDSKNIRVWNNLKEFAGFKSNSGLVKAIVIHGD--KIFTGHQDGKIRVWRASSRNP 169

Query: 196 SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW 255
           S +KRVG++PT KDYVKSSVNPKNYVEVRR+RNVL+I+H+DAVSCLSLN +QGLLYSGSW
Sbjct: 170 SAYKRVGTVPTLKDYVKSSVNPKNYVEVRRHRNVLRIKHFDAVSCLSLNEDQGLLYSGSW 229

Query: 256 DKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHF 315
           DKTLKVWR SD KCLESINAHDDAINSVV GFDSLVFTGSADGTVKVWRRELQG+ T HF
Sbjct: 230 DKTLKVWRTSDYKCLESINAHDDAINSVVTGFDSLVFTGSADGTVKVWRRELQGRRTGHF 289

Query: 316 LAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
           L Q LLK ENA+TAL+VNQESAV+YCGSSDGL
Sbjct: 290 LVQTLLKHENAVTALSVNQESAVIYCGSSDGL 321

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438707|ref|XP_004137129.1| PREDICTED: uncharacterized WD repeat-containing protein alr3466-like [Cucumis sativus] gi|449523844|ref|XP_004168933.1| PREDICTED: uncharacterized WD repeat-containing protein alr3466-like [Cucumis sativus]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 230/342 (67%), Positives = 280/342 (81%), Gaps = 16/342 (4%)

Query: 9   IVVKPNNN--LHRPKFGSFLYPESVIFSPRNNNNQDDGDYYSGHPKSSASSTSPRYNNNS 66
           +V++P NN  LHR +FG++L  +  IF+       DD D+   H  +SA+ TSP YN + 
Sbjct: 1   MVMEPRNNHGLHRKRFGAYLQSDPAIFAG------DDNDFSPRHSNASAA-TSPVYNYD- 52

Query: 67  GTRTPTSGEASPYLMSPWNNQPVSPYTKSPW-LMPPYSPNENLLSSCNGLIGSIVRKEGH 125
             ++P SG+ASPYLMSPWN Q  SPY+KSPW L    +  ++   + +GLIGS+VR+EGH
Sbjct: 53  --KSPASGDASPYLMSPWN-QSTSPYSKSPWTLRSGMNLYDDEFYAQSGLIGSLVREEGH 109

Query: 126 IYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKI 185
           +YSLA +GDLLYTGSDSKNIRVWKNLKE++GFKSNSGLVK+II+ GD  +IFTGHQDGKI
Sbjct: 110 VYSLAVAGDLLYTGSDSKNIRVWKNLKEYTGFKSNSGLVKSIILCGD--RIFTGHQDGKI 167

Query: 186 RIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA 245
           RIWKVS KNP  H R+GSLPT K++VKSS+NPKNYV+VRRNRNVL+I+H+DA+S +SLN 
Sbjct: 168 RIWKVSSKNPKSHSRIGSLPTLKEFVKSSMNPKNYVKVRRNRNVLRIKHFDAISSMSLNE 227

Query: 246 EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRR 305
           E GLLYSGSWDKT+KVWRI+D KCLESI AHDDA+N+V +G +SLVFTGSADGTVKVWRR
Sbjct: 228 ELGLLYSGSWDKTMKVWRIADSKCLESITAHDDAVNAVASGLESLVFTGSADGTVKVWRR 287

Query: 306 ELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
           ELQGKGTKHFL QVLLKQE AITAL VN+ SAV+YCGSS+G+
Sbjct: 288 ELQGKGTKHFLVQVLLKQETAITALVVNKSSAVLYCGSSEGV 329

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123228|ref|XP_002330264.1| predicted protein [Populus trichocarpa] gi|222871299|gb|EEF08430.1| predicted protein [Populus trichocarpa]

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 232/332 (69%), Positives = 275/332 (82%), Gaps = 18/332 (5%)

Query: 16  NLHRPKFGSFLYPESVIFSPRNNNNQDDGDYYSGHPKSSASSTSPRYNNNSGTRTPTSGE 75
           ++ RP FG+ L+ +  IF      NQDD D  S     ++++ SPRY +   + TP SG+
Sbjct: 1   SIQRPTFGALLHSDPAIF------NQDD-DESSNKNSPTSTNMSPRYYS---SFTPPSGD 50

Query: 76  ASPYLMSPWNNQPVSPYTKSPWLMPPYSPNENLLSSCNGLIGSIVRKEGHIYSLAASGDL 135
            SPYL SPW+   +SPYTKSPW++P  SP  + LS  NGL+GSI R+EGH+YS+AASGD 
Sbjct: 51  LSPYL-SPWSQ--LSPYTKSPWIIP--SPISHKLSK-NGLVGSISREEGHVYSIAASGDF 104

Query: 136 LYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNP 195
           LYTGSDSKN+RVWKNLKEFSGFKSNSGLVKAI++ G+  KIFT HQDGKIR+W +S +NP
Sbjct: 105 LYTGSDSKNVRVWKNLKEFSGFKSNSGLVKAIVVCGE--KIFTCHQDGKIRVWTISTRNP 162

Query: 196 SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW 255
           SV++RVG+LPT KD VK S+NPKNYVEVRR+RNVL+I+H+DAVSCLSLN +QGLLYSGSW
Sbjct: 163 SVYRRVGTLPTLKDCVKGSLNPKNYVEVRRHRNVLRIKHFDAVSCLSLNQDQGLLYSGSW 222

Query: 256 DKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHF 315
           DKTLKVWR+SD KCLESINAHDDAINSVV GFDSLVFTGSADGTVK WRRELQG+GT+HF
Sbjct: 223 DKTLKVWRVSDYKCLESINAHDDAINSVVTGFDSLVFTGSADGTVKAWRRELQGRGTRHF 282

Query: 316 LAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
           L Q LLK ENA+TAL+VNQESAV+YCGSSDGL
Sbjct: 283 LVQTLLKHENAVTALSVNQESAVIYCGSSDGL 314

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428610|ref|XP_002281238.1| PREDICTED: vegetative incompatibility protein HET-E-1-like [Vitis vinifera]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/350 (64%), Positives = 264/350 (75%), Gaps = 34/350 (9%)

Query: 1   MTNEGGGAIVVKPNNNLHRPKFGSFLYPESVIFSPRNNNNQDDGDYYSGHPKSSASSTSP 60
           M NE GG +V+   N L RPK  + L  +     P+N     D +  +     S  S+ P
Sbjct: 1   MRNERGG-VVLAERNVLPRPKLSAILRSD-----PKN-----DEEEMNRRSNVSMDSSVP 49

Query: 61  RYNNNSGTRTPTSGEASPYLMSPWNNQPVSPYTKSPWLM---PPYSPNENLLSSCNGLIG 117
                     P+SGE SP +MSPWN+ P SP+ KSPW     P   P        NGLIG
Sbjct: 50  ----------PSSGENSPLVMSPWNH-PSSPFAKSPWTKSSSPMGLPQ-------NGLIG 91

Query: 118 SIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIF 177
           S+VR+EGH+YSLAA+G+LLYTGSDSKNIRVWKNLK +SGFKSNSGLVKAI+I+G+  KIF
Sbjct: 92  SMVREEGHVYSLAATGNLLYTGSDSKNIRVWKNLKAYSGFKSNSGLVKAIVISGE--KIF 149

Query: 178 TGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA 237
           TGHQDGKIR+W+VS KNP +HKR+GSLPTFKD++KSS+NPKNYV+VRR R+VL+I+H+DA
Sbjct: 150 TGHQDGKIRVWRVSPKNPKLHKRIGSLPTFKDFLKSSINPKNYVKVRRKRSVLRIKHFDA 209

Query: 238 VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSAD 297
           VSCLSL+ +QGLLYSGSWDKTLKVWRISD KCLESI AHDDAIN+VVAGF  LVFTGSAD
Sbjct: 210 VSCLSLDQDQGLLYSGSWDKTLKVWRISDSKCLESIRAHDDAINAVVAGFAGLVFTGSAD 269

Query: 298 GTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
           GTVKVW R+L GKGTKH   Q LL QE AIT+LAVN E A++YCGSSDGL
Sbjct: 270 GTVKVWHRQLHGKGTKHLFLQTLLNQETAITSLAVNTEGAIIYCGSSDGL 319

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225468903|ref|XP_002268809.1| PREDICTED: uncharacterized WD repeat-containing protein alr3466-like [Vitis vinifera]

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/343 (63%), Positives = 262/343 (76%), Gaps = 38/343 (11%)

Query: 10  VVKPNNNLHRPKFGSFLY--PESVIFSPRNNNNQDDGDYYSGHPKSSASSTSPRYNNNSG 67
           +++ +N+L R  FG+ ++  P    FS RN               S++S+ SP +N    
Sbjct: 1   MLEESNSLERQTFGNLMHSAPPDDDFSFRN---------------SASSAPSPAHN---- 41

Query: 68  TRTPTSGEASPYLMSPWNNQPVSPYTKSPW---LMPPYSPNENLLSSCNGLIGSIVRKEG 124
                 G+ASPY+ + W     SPYTKSPW   ++PP + N       NGL+GS+VR+EG
Sbjct: 42  ------GDASPYIGT-WEGAS-SPYTKSPWSSHVVPPSNGNHY----PNGLMGSLVREEG 89

Query: 125 HIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGK 184
           HIYSLA SGDLLYTGSDSKNIRVWKN KEFSGFKSNSGLVKAIII+G+  KIFTGHQDGK
Sbjct: 90  HIYSLATSGDLLYTGSDSKNIRVWKNQKEFSGFKSNSGLVKAIIISGE--KIFTGHQDGK 147

Query: 185 IRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLN 244
           IR+WKVS KNPSVHKRVG+LPTF+DY++SS+NP NYVEVRR+RN L I+H+DA+S LSL+
Sbjct: 148 IRVWKVSAKNPSVHKRVGTLPTFRDYIRSSMNPSNYVEVRRHRNALWIKHFDAISSLSLS 207

Query: 245 AEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWR 304
            ++  LYS SWDKT+KVWRISD KCLES+N HDDA+N+VVAGFD LVFTGSADG+VKVWR
Sbjct: 208 EDKKFLYSASWDKTIKVWRISDSKCLESVNVHDDAVNAVVAGFDGLVFTGSADGSVKVWR 267

Query: 305 RELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
           RELQ KGTKHF +Q LLKQE A+TALAVN E+  +YCGSSDGL
Sbjct: 268 RELQAKGTKHFFSQTLLKQECAVTALAVNPEATFLYCGSSDGL 310

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147794784|emb|CAN66843.1| hypothetical protein VITISV_002364 [Vitis vinifera]

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/343 (63%), Positives = 262/343 (76%), Gaps = 38/343 (11%)

Query: 10  VVKPNNNLHRPKFGSFLY--PESVIFSPRNNNNQDDGDYYSGHPKSSASSTSPRYNNNSG 67
           +++ +N+L R  FG+ ++  P    FS RN               S++S+ SP +N    
Sbjct: 61  MLEESNSLERQTFGNLMHSAPPDDDFSFRN---------------SASSAPSPAHN---- 101

Query: 68  TRTPTSGEASPYLMSPWNNQPVSPYTKSPW---LMPPYSPNENLLSSCNGLIGSIVRKEG 124
                 G+ASPY+ + W     SPYTKSPW   ++PP + N       NGL+GS+VR+EG
Sbjct: 102 ------GDASPYIGT-WEGAS-SPYTKSPWSSHVVPPSNGNHY----PNGLMGSLVREEG 149

Query: 125 HIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGK 184
           HIYSLA SGDLLYTGSDSKNIRVWKN KEFSGFKSNSGLVKAIII+G+  KIFTGHQDGK
Sbjct: 150 HIYSLATSGDLLYTGSDSKNIRVWKNQKEFSGFKSNSGLVKAIIISGE--KIFTGHQDGK 207

Query: 185 IRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLN 244
           IR+WKVS KNPSVHKRVG+LPTF+DY++SS+NP NYVEVRR+RN L I+H+DA+S LSL+
Sbjct: 208 IRVWKVSAKNPSVHKRVGTLPTFRDYIRSSMNPSNYVEVRRHRNALWIKHFDAISSLSLS 267

Query: 245 AEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWR 304
            ++  LYS SWDKT+KVWRISD KCLES+N HDDA+N+VVAGFD LVFTGSADG+VKVWR
Sbjct: 268 EDKKFLYSASWDKTIKVWRISDSKCLESVNVHDDAVNAVVAGFDGLVFTGSADGSVKVWR 327

Query: 305 RELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
           RELQ KGTKHF +Q LLKQE A+TALAVN E+  +YCGSSDGL
Sbjct: 328 RELQAKGTKHFFSQTLLKQECAVTALAVNPEATFLYCGSSDGL 370

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230244|ref|NP_188525.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|9280312|dbj|BAB01691.1| En/Spm-like transposon protein-like [Arabidopsis thaliana] gi|26450378|dbj|BAC42304.1| unknown protein [Arabidopsis thaliana] gi|28973059|gb|AAO63854.1| unknown protein [Arabidopsis thaliana] gi|332642651|gb|AEE76172.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/350 (60%), Positives = 255/350 (72%), Gaps = 26/350 (7%)

Query: 19  RPKFGSFLYPESVIFSPRNNNNQDDGDYYSGHPKSSASSTSPRYNNNSGTRTPTSGEASP 78
           R  F SFL  +        ++  DD    S   K+        Y  +    + TSGE+SP
Sbjct: 15  RLTFASFLNSDPAADEEEQSHGVDDIINPSSSNKNINKDVHHNYRQSQSNASTTSGESSP 74

Query: 79  -YLMSPWN---------------------NQPVSPYTKSPWLMPPYSPNENLLSSCNGLI 116
             ++SPWN                     NQ  SPY KSPW+    + +++   + NGLI
Sbjct: 75  NQVLSPWNQTYSPYYTDTTNTPSMSPSPWNQTYSPYYKSPWIYQTRNIDDD---TDNGLI 131

Query: 117 GSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKI 176
           G+IVR++GH+YSLAASGDLL+TGSDSKNIRVWK+LK+ +GFKS SGLVKAI+ITGD N+I
Sbjct: 132 GTIVRQDGHVYSLAASGDLLFTGSDSKNIRVWKDLKDHTGFKSTSGLVKAIVITGD-NRI 190

Query: 177 FTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYD 236
           FTGHQDGKIR+W+ S++    + R+GSLPT K+++  SVNPKNYVEVRR +NVLKIRHYD
Sbjct: 191 FTGHQDGKIRVWRGSKRRTGGYSRIGSLPTLKEFLTKSVNPKNYVEVRRRKNVLKIRHYD 250

Query: 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSA 296
           AVSCLSLN E GLLYSGSWDKTLKVWR+SD KCLESI AHDDAIN+V AGFD L+FTGSA
Sbjct: 251 AVSCLSLNEELGLLYSGSWDKTLKVWRLSDSKCLESIQAHDDAINTVAAGFDDLLFTGSA 310

Query: 297 DGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346
           DGT+KVW+RELQGKGTKHFL  VL+KQENA+TALAVN  +AVVYCGSSDG
Sbjct: 311 DGTLKVWKRELQGKGTKHFLVNVLMKQENAVTALAVNITAAVVYCGSSDG 360

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15235354|ref|NP_195164.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|4455183|emb|CAB36715.1| putative protein [Arabidopsis thaliana] gi|7270388|emb|CAB80155.1| putative protein [Arabidopsis thaliana] gi|26451805|dbj|BAC42996.1| unknown protein [Arabidopsis thaliana] gi|29028888|gb|AAO64823.1| At4g34380 [Arabidopsis thaliana] gi|332660966|gb|AEE86366.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 230/367 (62%), Positives = 265/367 (72%), Gaps = 40/367 (10%)

Query: 1   MTNEGGGAIVVK----PNNNLH---------------RPKFGSFLYPE-SVIFSPRNNNN 40
           M NE GG +VV     P NN+H               RPKFG+    +   IF P     
Sbjct: 1   MRNETGGTMVVDLQTDPYNNIHSRHNLSYDLSEGPKPRPKFGNISKTDHDEIFPP----- 55

Query: 41  QDDGDYYSGHPKSSASSTSPRYNNNSGTRTPTSGEASPYLMSPWNNQPVSPYTKSPWLMP 100
            DD    + +      S+      +SG   P SGE SP +MSPW    VSP    PW   
Sbjct: 56  -DDPIIINSNVTHQRFSSVSASTMSSG---PASGEGSPCVMSPWAR--VSP----PW--- 102

Query: 101 PYSPNENLLSSCNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSN 160
               NE+ +   NGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKE +GFKS+
Sbjct: 103 GADFNEDNVLETNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEHAGFKSS 162

Query: 161 SGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNY 220
           SGL+KAI+I GD  +IFTGHQDGKIRIWKVS++ P  HKRVG+LPTFK  VKSSVNPK++
Sbjct: 163 SGLIKAIVIFGD--RIFTGHQDGKIRIWKVSKRKPGKHKRVGTLPTFKSMVKSSVNPKHF 220

Query: 221 VEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAI 280
           +EVRRNRN +K +H DAVS LSL+ E GLLYS SWD T+KVWRI+D KCLESI+AHDDAI
Sbjct: 221 MEVRRNRNSVKTKHNDAVSSLSLDVELGLLYSSSWDTTIKVWRIADSKCLESIHAHDDAI 280

Query: 281 NSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVY 340
           NSV++GFD LVFTGSADGTVKVW+RELQGKGTKH LAQVLLKQENA+TALAV  +S++VY
Sbjct: 281 NSVMSGFDDLVFTGSADGTVKVWKRELQGKGTKHTLAQVLLKQENAVTALAVKSQSSIVY 340

Query: 341 CGSSDGL 347
           CGSSDGL
Sbjct: 341 CGSSDGL 347

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|102139859|gb|ABF70017.1| WD-40 repeat family protein [Musa acuminata]

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 189/280 (67%), Positives = 229/280 (81%), Gaps = 4/280 (1%)

Query: 69  RTPTSGEASPYLMSPWNNQPVSPYTKSPWLMPPYSPNENLLSSCNGLIGSIVRKEGHIYS 128
           R PTS  ASPY +SPWN    SP+ KSPW   P   +E    S  GL+GS+VR+EGH+YS
Sbjct: 24  RNPTSTGASPYFLSPWNPVAASPFAKSPWAYLPLLSDEAADPSATGLVGSLVREEGHVYS 83

Query: 129 LAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW 188
           LA++GD+LYTGSDS+NIRVWK  +E SGFKS+SGLVKAI++ GD  +IFTGHQDGKIRIW
Sbjct: 84  LASAGDILYTGSDSRNIRVWKGRRELSGFKSSSGLVKAIVVAGD--RIFTGHQDGKIRIW 141

Query: 189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQG 248
           K S KNP+VH+RVG+LP  KD +KSS+NP NYVEVRR+RNV+ +RH+DAVSCLSL+ E G
Sbjct: 142 KTSSKNPAVHRRVGTLPRLKDLLKSSINPSNYVEVRRHRNVVWLRHFDAVSCLSLDEEAG 201

Query: 249 LLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQ 308
           +LYSGSWDKT+KVWRISD KCLESI AHDDA+N+V  GF  L+FTGSADGT KVWRRE  
Sbjct: 202 ILYSGSWDKTVKVWRISDSKCLESIKAHDDAVNAVATGFGGLLFTGSADGTAKVWRREAA 261

Query: 309 GKG--TKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346
           GKG  T+H L Q+LL+QE+A+TA+AV++ + VVYCGSSDG
Sbjct: 262 GKGGATRHVLVQMLLRQESAVTAVAVSEAAGVVYCGSSDG 301

Source: Musa acuminata

Species: Musa acuminata

Genus: Musa

Family: Musaceae

Order: Zingiberales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	347
TAIR|locus:2116194	495	AT4G34380 "AT4G34380" [Arabido	0.968	0.678	0.636	6.3e-108
TAIR|locus:2085929	473	AT3G18950 "AT3G18950" [Arabido	0.890	0.653	0.639	2.5e-106
TAIR|locus:2010157	471	AT1G49450 "AT1G49450" [Arabido	0.927	0.683	0.615	1.7e-105
TAIR|locus:2066276	465	AT2G26490 "AT2G26490" [Arabido	0.763	0.569	0.676	2e-95
TAIR|locus:2074825	469	AT3G50390 "AT3G50390" [Arabido	0.792	0.586	0.598	4.6e-89
TAIR|locus:2015423	351	AT1G47610 "AT1G47610" [Arabido	0.671	0.663	0.687	3.1e-83
TAIR|locus:2083710	415	AT3G51930 "AT3G51930" [Arabido	0.628	0.525	0.459	2.9e-48
TAIR|locus:2032452	415	AT1G24130 "AT1G24130" [Arabido	0.697	0.583	0.416	3.8e-46
TAIR|locus:2024031	418	AT1G24530 "AT1G24530" [Arabido	0.541	0.449	0.448	5.9e-41
TAIR|locus:2170061	388	AT5G50120 "AT5G50120" [Arabido	0.625	0.559	0.403	1.8e-39

TAIR|locus:2116194 AT4G34380 "AT4G34380" [Arabidopsis thaliana (taxid:3702)]

 Score = 1067 (380.7 bits), Expect = 6.3e-108, P = 6.3e-108
 Identities = 228/358 (63%), Positives = 267/358 (74%)

Query:     1 MTNEGGGAIVVK----PNNNLHRPKFGSFLYPESVIFSPRNNN-NQDDGD--YYSGHPKS 53
             M NE GG +VV     P NN+H     S+   E     P+  N ++ D D  +    P  
Sbjct:     1 MRNETGGTMVVDLQTDPYNNIHSRHNLSYDLSEGPKPRPKFGNISKTDHDEIFPPDDPII 60

Query:    54 SASS-TSPRYNNNSGTRT---PTSGEASPYLMSPWNNQPVSPYTKSPWLMPPYSPNENLL 109
               S+ T  R+++ S +     P SGE SP +MSPW    VSP    PW       NE+ +
Sbjct:    61 INSNVTHQRFSSVSASTMSSGPASGEGSPCVMSPWAR--VSP----PW---GADFNEDNV 111

Query:   110 SSCNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIII 169
                NGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKE +GFKS+SGL+KAI+I
Sbjct:   112 LETNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEHAGFKSSSGLIKAIVI 171

Query:   170 TGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNV 229
              GD  +IFTGHQDGKIRIWKVS++ P  HKRVG+LPTFK  VKSSVNPK+++EVRRNRN 
Sbjct:   172 FGD--RIFTGHQDGKIRIWKVSKRKPGKHKRVGTLPTFKSMVKSSVNPKHFMEVRRNRNS 229

Query:   230 LKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS 289
             +K +H DAVS LSL+ E GLLYS SWD T+KVWRI+D KCLESI+AHDDAINSV++GFD 
Sbjct:   230 VKTKHNDAVSSLSLDVELGLLYSSSWDTTIKVWRIADSKCLESIHAHDDAINSVMSGFDD 289

Query:   290 LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
             LVFTGSADGTVKVW+RELQGKGTKH LAQVLLKQENA+TALAV  +S++VYCGSSDGL
Sbjct:   290 LVFTGSADGTVKVWKRELQGKGTKHTLAQVLLKQENAVTALAVKSQSSIVYCGSSDGL 347

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2085929 AT3G18950 "AT3G18950" [Arabidopsis thaliana (taxid:3702)]

 Score = 1052 (375.4 bits), Expect = 2.5e-106, P = 2.5e-106
 Identities = 209/327 (63%), Positives = 255/327 (77%)

Query:    32 IFSPRNNNNQDDGDYYSGH--PKSSASSTSPRYNNNSGTRTPTSGEASPYLM-------- 81
             I +P ++N   + D +  +   +S+AS+TS   + N    +P +   SPY          
Sbjct:    40 IINPSSSNKNINKDVHHNYRQSQSNASTTSGESSPNQ-VLSPWNQTYSPYYTDTTNTPSM 98

Query:    82 --SPWNNQPVSPYTKSPWLMPPYSPNENLLSSCNGLIGSIVRKEGHIYSLAASGDLLYTG 139
               SPWN Q  SPY KSPW+    + +++   + NGLIG+IVR++GH+YSLAASGDLL+TG
Sbjct:    99 SPSPWN-QTYSPYYKSPWIYQTRNIDDD---TDNGLIGTIVRQDGHVYSLAASGDLLFTG 154

Query:   140 SDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHK 199
             SDSKNIRVWK+LK+ +GFKS SGLVKAI+ITGD N+IFTGHQDGKIR+W+ S++    + 
Sbjct:   155 SDSKNIRVWKDLKDHTGFKSTSGLVKAIVITGD-NRIFTGHQDGKIRVWRGSKRRTGGYS 213

Query:   200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTL 259
             R+GSLPT K+++  SVNPKNYVEVRR +NVLKIRHYDAVSCLSLN E GLLYSGSWDKTL
Sbjct:   214 RIGSLPTLKEFLTKSVNPKNYVEVRRRKNVLKIRHYDAVSCLSLNEELGLLYSGSWDKTL 273

Query:   260 KVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQV 319
             KVWR+SD KCLESI AHDDAIN+V AGFD L+FTGSADGT+KVW+RELQGKGTKHFL  V
Sbjct:   274 KVWRLSDSKCLESIQAHDDAINTVAAGFDDLLFTGSADGTLKVWKRELQGKGTKHFLVNV 333

Query:   320 LLKQENAITALAVNQESAVVYCGSSDG 346
             L+KQENA+TALAVN  +AVVYCGSSDG
Sbjct:   334 LMKQENAVTALAVNITAAVVYCGSSDG 360

GO:0000166 "nucleotide binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2010157 AT1G49450 "AT1G49450" [Arabidopsis thaliana (taxid:3702)]

 Score = 1044 (372.6 bits), Expect = 1.7e-105, P = 1.7e-105
 Identities = 208/338 (61%), Positives = 255/338 (75%)

Query:    21 KFGSFLYPESVIFSPRNNNNQD------DGDYYSGHPKSSASSTSPRYNNNSGTRT--PT 72
             K GS    E    S  +++NQ       D    S    +S+ S+SP Y  +   +T  P+
Sbjct:    23 KSGSLAAEEETYHSDGDHHNQSTFSSNSDSQRPSNASSASSDSSSPIYPLSPWNQTYYPS 82

Query:    73 SGEASPY---LMSPWNNQPVSPYTKSPWLMPPYSPN-ENLLSSCNGLIGSIVRKEGHIYS 128
             +   + +     SPWN Q  SPY KSPW+    + + E+     NGLIG++VR+EGH+YS
Sbjct:    83 NDNTTSFSSVTQSPWN-QTYSPYHKSPWIYQTRNSDFED--DPDNGLIGTVVRQEGHVYS 139

Query:   129 LAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW 188
             LAASGDLL+TGSDSKNIRVWK+LK+FSGFKS SG VKAI++T D N++FTGHQDGKIR+W
Sbjct:   140 LAASGDLLFTGSDSKNIRVWKDLKDFSGFKSTSGFVKAIVVTRD-NRVFTGHQDGKIRVW 198

Query:   189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQG 248
             + S+KNP  + RVGSLPT K+++  SVNP+NYVEVRR +NVLKIRH+DAVSCLSLN + G
Sbjct:   199 RGSKKNPEKYSRVGSLPTLKEFLTKSVNPRNYVEVRRRKNVLKIRHFDAVSCLSLNEDLG 258

Query:   249 LLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQ 308
             LLYSGSWDKTLKVWR+SD KCLESI AHDDA+N+VV+GFD LVFTGSADGT+KVW+RE+Q
Sbjct:   259 LLYSGSWDKTLKVWRLSDSKCLESIEAHDDAVNTVVSGFDDLVFTGSADGTLKVWKREVQ 318

Query:   309 GKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346
             GK  KH L QVL+KQENA+TALAVN   AVVYCGSSDG
Sbjct:   319 GKEMKHVLVQVLMKQENAVTALAVNLTDAVVYCGSSDG 356

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2066276 AT2G26490 "AT2G26490" [Arabidopsis thaliana (taxid:3702)]

 Score = 949 (339.1 bits), Expect = 2.0e-95, P = 2.0e-95
 Identities = 186/275 (67%), Positives = 223/275 (81%)

Query:    73 SGEASPYLMSPWNNQPVSPYTKSPWLMPPYSPNENLLSSCNGLIGSIVRKEGHIYSLAAS 132
             S E SP +MSPWN    +P+T++ W     +  ENL    NGLIGS+VR+EGHIYSLAA+
Sbjct:    54 SCEGSPMMMSPWNQ--ATPFTQTQWS----TVEENLPQ--NGLIGSLVREEGHIYSLAAT 105

Query:   133 GDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSR 192
              DLLYTGSDSKNIRVWKNLKEFS FK NSGLVKAI+I+G+  KIFTGHQDGKIR+WKVS 
Sbjct:   106 KDLLYTGSDSKNIRVWKNLKEFSAFKCNSGLVKAIVISGE--KIFTGHQDGKIRVWKVSP 163

Query:   193 KNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYS 252
             KN S+HKR G+LPT KD  K+S+ P+NYVEV+++R  L I+H DAVSCLSLN EQGLLYS
Sbjct:   164 KNQSLHKRSGTLPTLKDIFKASLKPRNYVEVKKHRTALWIKHADAVSCLSLNDEQGLLYS 223

Query:   253 GSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGT 312
              SWD+T+KVWRI+D KCLESI AHDDA+NSVV+  +++VF+GSADGTVK W+R+ QGK T
Sbjct:   224 ASWDRTIKVWRIADSKCLESIPAHDDAVNSVVSTTEAIVFSGSADGTVKAWKRDQQGKYT 283

Query:   313 KHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
             KH L Q L KQE+A+TALAV++  A VY GSSDGL
Sbjct:   284 KHTLMQTLTKQESAVTALAVSKNGAAVYFGSSDGL 318

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0006944 "cellular membrane fusion" evidence=RCA

TAIR|locus:2074825 AT3G50390 "AT3G50390" [Arabidopsis thaliana (taxid:3702)]

 Score = 889 (318.0 bits), Expect = 4.6e-89, P = 4.6e-89
 Identities = 170/284 (59%), Positives = 217/284 (76%)

Query:    70 TPTSGEASPYLMSPWNNQPVSPYTKSPW----LMPPYSPNENLLSSCNGLIGSIVRKEGH 125
             +P+ G +SP   SPW+ Q       SP+    +    +  ++   S N L+GS+VR+EGH
Sbjct:    41 SPSEGSSSPLSKSPWSVQVDPSAVDSPYHSVKVTTDTTKEKSTNHSPNILLGSLVREEGH 100

Query:   126 IYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKI 185
             IYSLA SGDLLYTGSDSKNIRVWKN  EFS FKSNSGLVKAI++ GD  KIFTGHQDGKI
Sbjct:   101 IYSLATSGDLLYTGSDSKNIRVWKNHVEFSSFKSNSGLVKAIVLAGD--KIFTGHQDGKI 158

Query:   186 RIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVE-VRRNRN--VLKIRHYDAVSCLS 242
             R+WK + K  +VH+RVG++P   DY+++S+ P +Y    RRNR+   L  RH DA+SCL+
Sbjct:   159 RVWKAASKESNVHRRVGTMPNLLDYIRNSIVPSSYFNFTRRNRSSAALGFRHLDAISCLA 218

Query:   243 LNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKV 302
             L+ ++ LLYSGSWDKT KVWR+SD +C+ES+NAH+DA+N+VV+GFD LVFTGSADGTVKV
Sbjct:   219 LSEDKRLLYSGSWDKTFKVWRVSDLRCVESVNAHEDAVNAVVSGFDGLVFTGSADGTVKV 278

Query:   303 WRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346
             WRRE Q K TKHF ++ LLKQ+ A+TA+AV+Q + +VYCGSSDG
Sbjct:   279 WRREDQAKDTKHFFSETLLKQDCAVTAIAVDQSATLVYCGSSDG 322

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015423 AT1G47610 "AT1G47610" [Arabidopsis thaliana (taxid:3702)]

 Score = 834 (298.6 bits), Expect = 3.1e-83, P = 3.1e-83
 Identities = 163/237 (68%), Positives = 190/237 (80%)

Query:   110 SSCNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIII 169
             S  + L+G IVR+EGHIYSLAA+ DLLYTGSD+  IRVWKNL EFSGFKSNSGLVKAI+I
Sbjct:    11 SDGDSLVGEIVREEGHIYSLAATNDLLYTGSDNNYIRVWKNLNEFSGFKSNSGLVKAIVI 70

Query:   170 TGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNV 229
             + ++ K+FTGHQDGKIR+WK S KNP V+ R GSLP  KD +KSSV P NYVEVRR R  
Sbjct:    71 SREA-KVFTGHQDGKIRVWKTSSKNPRVYTRAGSLPALKDVLKSSVKPSNYVEVRRCRTA 129

Query:   230 LKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS 289
             L I+H DAVSCLSL  +QGLLYS SWD+T+KVWRI D KC+ESI AHDDA+NSV    +S
Sbjct:   130 LWIKHSDAVSCLSLAEDQGLLYSASWDRTVKVWRIHDLKCIESIKAHDDAVNSVTTA-ES 188

Query:   290 LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346
             LVFTGSADGTVKVW+RE++GK T H L Q LLKQE+A+TAL  +  +  VY GSSDG
Sbjct:   189 LVFTGSADGTVKVWKREIRGKRTAHSLFQTLLKQESAVTALVTSHMA--VYSGSSDG 243

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2083710 AT3G51930 "AT3G51930" [Arabidopsis thaliana (taxid:3702)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 108/235 (45%), Positives = 152/235 (64%)

Query:   124 GHIYSLAASGDLLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQ 181
             G + SLA  G+ L + S  K+I VW+  +LK F+ F    G VKA++  G  +K+FT HQ
Sbjct:    62 GSVSSLALCGEFLLSASQGKDIIVWQQPDLKIFAKFGQGDGSVKALVSVG--SKVFTAHQ 119

Query:   182 DGKIRIWKVSRKNP-SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSC 240
             D +IR+WKVSR+N  +  + V +LPT KDY+   +   NYV+ RRN   L I H D++SC
Sbjct:   120 DSRIRVWKVSRRNSENAFRLVDTLPTTKDYLGKFMKQSNYVQTRRNHKRLWIEHADSISC 179

Query:   241 LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTV 300
             L+++A  G++YSGSWDKTLKVWR+SD KCLESI AHDDAIN +VAG D  V++ SADG V
Sbjct:   180 LAVHA--GIIYSGSWDKTLKVWRLSDLKCLESIKAHDDAINGLVAG-DGRVYSASADGKV 236

Query:   301 KVW----RRELQGKGTK----HFLAQVLL-KQENAITALAVNQESAVVYCGSSDG 346
             K+W    R++++   +     H L   L  + E ++ ++ V+ +   VY G SDG
Sbjct:   237 KIWGKEKRKQIESTSSSSSSLHVLKATLEGRAEVSVNSVVVSGDGNWVYGGGSDG 291

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

TAIR|locus:2032452 AT1G24130 "AT1G24130" [Arabidopsis thaliana (taxid:3702)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 109/262 (41%), Positives = 154/262 (58%)

Query:    98 LMPPYSPNENLLSSCNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFS-- 155
             L+P  S      S  +  + ++  K  ++ SLA S  LLYTGS +  IRVW     FS  
Sbjct:    44 LVPSLSFQHQSSSVDHHCLATLKDKSSYVSSLAVSDKLLYTGSSNSEIRVWPREPPFSPE 103

Query:   156 ---GFKSN-----SGLVKAIIITGDSNKIFTGHQDGKIRIWKV---SRKNPSVHKRVGSL 204
                G   N     +G VK+++I GD  K+ + HQD KIR+WK+   S +    +K V +L
Sbjct:   104 YSTGDDRNVVANGNGGVKSLVILGD--KLISAHQDHKIRVWKIIDESNRRGQKYKCVATL 161

Query:   205 PTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI 264
             PT  D  K+  + K+YVEVRR++    + H DAVS L+L+ +  LLYS SWD++ K+WR 
Sbjct:   162 PTMNDRFKTLFSSKSYVEVRRHKKCTWVHHVDAVSSLALSQDGSLLYSASWDRSFKIWRT 221

Query:   265 SDCKCLESIN-AHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQ 323
             SD KCL+SI  AHDDAIN++V   D  V+TGSAD  +KVW +    K  KH L   L K 
Sbjct:   222 SDFKCLDSIEKAHDDAINAIVVSKDGFVYTGSADKKIKVWNK----KDKKHSLVATLTKH 277

Query:   324 ENAITALAVNQESAVVYCGSSD 345
              +A+ ALA++++  V+Y G+ D
Sbjct:   278 LSAVNALAISEDGKVLYSGACD 299

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2024031 AT1G24530 "AT1G24530" [Arabidopsis thaliana (taxid:3702)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 88/196 (44%), Positives = 130/196 (66%)

Query:   150 NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKD 209
             +L  F+G    SG VK++  +G+  KIFT HQDGKI +WK++ K  S +K++ +LPT  D
Sbjct:   114 HLDTFNGQDPFSGTVKSVGFSGE--KIFTAHQDGKIGVWKLTAK--SGYKQLTTLPTLND 169

Query:   210 YVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC 269
              ++    PKNYV+VRR++  L I H DAV+ L+++   G +YS SWDKTLK+WR SD +C
Sbjct:   170 RLRRFALPKNYVQVRRHKKRLWIEHADAVTALAVS--DGFIYSVSWDKTLKIWRASDLRC 227

Query:   270 LESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITA 329
              ESI AHDDA+N++    +  V+TGSAD  ++VW +    K  +H L   L K ++A+ A
Sbjct:   228 KESIKAHDDAVNAIAVSTNGTVYTGSADRRIRVWAKPTGEK--RHTLVATLEKHKSAVNA 285

Query:   330 LAVNQESAVVYCGSSD 345
             LA+N + +V++ GS D
Sbjct:   286 LALNDDGSVLFSGSCD 301

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:2170061 AT5G50120 "AT5G50120" [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 100/248 (40%), Positives = 144/248 (58%)

Query:   125 HIYSLAASGDLLYTGSDSKNIRVW-----KNLKEFS-------GFKSNSGLVKAIIITGD 172
             +I SL  +G  LYTGS+   +R+W     + L E S       G +   G VK+++I  D
Sbjct:    40 YISSLTLAGKRLYTGSNDGVVRLWNANTLETLAEASSNGDVITGERGGGGAVKSLVILAD 99

Query:   173 SNKIFTGHQDGKIRIWKVSRKNPSVHKRVG--------SLPTFKDYVKSSVNPKNYVEVR 224
               K+FT HQD KIR+WK+   N  V + VG        ++PT  D     + PKN VE+R
Sbjct:   100 --KLFTAHQDHKIRVWKI---NDVVEEDVGGKKYMHLATMPTISDRFAKCLMPKNQVEIR 154

Query:   225 RNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI-NAHDDAINSV 283
             R++    + H DAVS L+L+ +  LLYS SWD+TLK+WR +D KCLES  NAHDDAIN+V
Sbjct:   155 RHKKASWVHHVDAVSGLALSRDGTLLYSVSWDRTLKIWRTTDFKCLESFTNAHDDAINAV 214

Query:   284 VAGFDSLVFTGSADGTVKVWRRELQG----KGTKHFLAQVLLKQENAITALAVN-QESAV 338
                 +  ++TGS+D  +KVWR+ +      K  KH L  +L +  + I ALA++    ++
Sbjct:   215 ALSENGDIYTGSSDQRIKVWRKNINEENVKKKRKHSLVAILSEHNSGINALALSGTNGSL 274

Query:   339 VYCGSSDG 346
             ++ G SDG
Sbjct:   275 LHSGGSDG 282

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	347
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-26
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-24
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-17
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-12
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	7e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-04
smart00320	40	smart00320, WD40, WD40 repeats	1e-04
smart00320	40	smart00320, WD40, WD40 repeats	5e-04
PTZ00395	1560	PTZ00395, PTZ00395, Sec24-related protein; Provisi	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  106 bits (266), Expect = 2e-26
 Identities = 57/232 (24%), Positives = 93/232 (40%), Gaps = 46/232 (19%)

Query: 123 EGH---IYSLAAS--GDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIITGDSNK 175
           +GH   +  +A S  G LL TGS    I+VW  +  +     K ++G V+ +  + D   
Sbjct: 6   KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTY 65

Query: 176 IFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHY 235
           + +G  D  IR+W +      V        T                           H 
Sbjct: 66  LASGSSDKTIRLWDLE-TGECVR-------TLTG------------------------HT 93

Query: 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV-VAGFDSLVFTG 294
             VS ++ + +  +L S S DKT+KVW +   KCL ++  H D +NSV  +   + V + 
Sbjct: 94  SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASS 153

Query: 295 SADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346
           S DGT+K+W                L      + ++A + +   +   SSDG
Sbjct: 154 SQDGTIKLWD------LRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDG 199

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 98.9 bits (247), Expect = 7e-24
 Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 52/235 (22%)

Query: 123 EGH---IYSLA--ASGDLLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIITGD 172
            GH   + S+A    G +L + S  K I+VW     K L    G   ++  V ++  + D
Sbjct: 90  TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG---HTDWVNSVAFSPD 146

Query: 173 SNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKI 232
              + +  QDG I++W     +    K V +L                            
Sbjct: 147 GTFVASSSQDGTIKLW-----DLRTGKCVATLTG-------------------------- 175

Query: 233 RHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LV 291
            H   V+ ++ + +   L S S D T+K+W +S  KCL ++  H++ +NSV    D  L+
Sbjct: 176 -HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLL 234

Query: 292 FTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346
            +GS DGT++VW              Q L    N++T+LA + +   +  GS+DG
Sbjct: 235 ASGSEDGTIRVWDLRTGE------CVQTLSGHTNSVTSLAWSPDGKRLASGSADG 283

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 80.8 bits (200), Expect = 2e-17
 Identities = 42/193 (21%), Positives = 76/193 (39%), Gaps = 43/193 (22%)

Query: 157 FKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVN 216
            K ++G V  +  + D   + TG  DG I++W +                          
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL--------------------- 43

Query: 217 PKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH 276
                 +R  +      H   V  ++ +A+   L SGS DKT+++W +   +C+ ++  H
Sbjct: 44  ------LRTLKG-----HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGH 92

Query: 277 DDAINSVVAGF---DSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVN 333
              ++SV   F     ++ + S D T+KVW  E  GK         L    + + ++A +
Sbjct: 93  TSYVSSVA--FSPDGRILSSSSRDKTIKVWDVE-TGK-----CLTTLRGHTDWVNSVAFS 144

Query: 334 QESAVVYCGSSDG 346
            +   V   S DG
Sbjct: 145 PDGTFVASSSQDG 157

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 66.3 bits (160), Expect = 6e-12
 Identities = 38/197 (19%), Positives = 82/197 (41%), Gaps = 16/197 (8%)

Query: 126 IYSLAASGDLLYTGSDSKNIRVWK---NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQD 182
           + S +  G LL +GS    IR+W    +         +S  V ++  + D   + +G  D
Sbjct: 246 VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSD 305

Query: 183 GKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYV------------EVRRNRNVL 230
           G +R+W +          +         +  S +    V            ++R  + + 
Sbjct: 306 GTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLK 365

Query: 231 KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS- 289
            +  +  V  +S + +  ++ SGS D T+++W +S    L +++ H   + S+    D  
Sbjct: 366 TLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGK 425

Query: 290 LVFTGSADGTVKVWRRE 306
            + +GS+D T+++W  +
Sbjct: 426 SLASGSSDNTIRLWDLK 442

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 59.7 bits (145), Expect = 4e-10
 Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 33/166 (19%)

Query: 123 EGH---IYSLAASGD--LLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIITGD 172
            GH   + S+A S D   + + S    I++W     K +   +G       V ++  + D
Sbjct: 132 RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGE---VNSVAFSPD 188

Query: 173 SNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKS-SVNPKNYV---------- 221
             K+ +   DG I++W     + S  K +G+L   ++ V S + +P  Y+          
Sbjct: 189 GEKLLSSSSDGTIKLW-----DLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTI 243

Query: 222 ---EVRRNRNVLKIR-HYDAVSCLSLNAEQGLLYSGSWDKTLKVWR 263
              ++R    V  +  H ++V+ L+ + +   L SGS D T+++W 
Sbjct: 244 RVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 57.8 bits (138), Expect = 3e-09
 Identities = 56/237 (23%), Positives = 102/237 (43%), Gaps = 28/237 (11%)

Query: 132 SGDLLYTGSDSKNIRVWKNLKEFSGFKSNSG-----LVKAIIITGDSNKIFT--GHQDGK 184
            G+LL +GS    I++W         KS  G     + K  + + D N I       DG 
Sbjct: 76  DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGT 135

Query: 185 IRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIR----------- 233
           +++W +S     +    G   +    +  S + K           +K+            
Sbjct: 136 VKLWDLSTPGKLIRTLEGHSESVTS-LAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTL 194

Query: 234 --HYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCKCLES-INAHDDAINSVVAGFDS 289
             H D VS L+ + +   L+ SGS D T+++W +S  K L S ++ H D++ S  +   S
Sbjct: 195 AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGS 254

Query: 290 LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346
           L+ +GS+DGT+++W         +      L    +++ ++A + +  ++  GSSDG
Sbjct: 255 LLASGSSDGTIRLWDLRSSSSLLR-----TLSGHSSSVLSVAFSPDGKLLASGSSDG 306

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 52.8 bits (125), Expect = 1e-07
 Identities = 48/263 (18%), Positives = 101/263 (38%), Gaps = 25/263 (9%)

Query: 103 SPNENLLSSCNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSG 162
           + +EN                  + SL +S   +   +   +  V          + +  
Sbjct: 7   TSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHED 66

Query: 163 LVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVG-----------SLPTFKDYV 211
            + +I  + D   + +G  DG I++W +      +    G           S P     +
Sbjct: 67  SITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSIL 126

Query: 212 KSSVNPKNYVEVRRNRNVLKIR-----HYDAVSCLSLN-AEQGLLYSGSWDKTLKVWRIS 265
            +S +    V++       K+      H ++V+ L+ +   + L    S D T+K+W + 
Sbjct: 127 LASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR 186

Query: 266 DCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQ 323
             K L ++  H D ++S+    D   L+ +GS+DGT+++W        +   L +  L  
Sbjct: 187 TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLW------DLSTGKLLRSTLSG 240

Query: 324 ENAITALAVNQESAVVYCGSSDG 346
            +     + + + +++  GSSDG
Sbjct: 241 HSDSVVSSFSPDGSLLASGSSDG 263

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 47.4 bits (111), Expect = 6e-06
 Identities = 40/175 (22%), Positives = 70/175 (40%), Gaps = 16/175 (9%)

Query: 109 LSSCNGLIGSIVRKEGHIYSLAASGD--LLYTGSDSKNIRVW----KNLKEFSGFKSNSG 162
           L S + L+ ++      + S+A S D  LL +GS    +R+W      L      K + G
Sbjct: 270 LRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG 329

Query: 163 LVKAIIITGDSNKIFTG-HQDGKIRIWKVSR----KNPSVHKRVGSLPTFKDYVKSSVNP 217
            V ++  + D + + +G   DG IR+W +      K    H  V S+    D    S   
Sbjct: 330 PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGS 389

Query: 218 KNYVEVRRNRNVLKIR-----HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267
            +      + +   +      H   V+ L  + +   L SGS D T+++W +   
Sbjct: 390 TDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTS 444

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.3 bits (92), Expect = 7e-05
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 267 CKCLESINAHDDAINSV-VAGFDSLVFTGSADGTVKVW 303
            K L ++  H   + SV  +   +L+ +GS DGTV+VW
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVW 262
           H   V+ ++ + +  LL SGS D T++VW
Sbjct: 10  HTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 268 KCLESINAHDDAINSV-VAGFDSLVFTGSADGTVKVW 303
           + L+++  H   + SV  +     + +GS DGT+K+W
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.9 bits (86), Expect = 5e-04
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVW 262
           H   V+ ++ + +   L SGS D T+K+W
Sbjct: 11  HTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional

 Score = 39.3 bits (91), Expect = 0.003
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query: 47  YSGHPKSSASSTSPRYNNNSGTRTPTSG---EASPYLMSPWNNQPVS--PYTKSPWLMPP 101
           +S    S+  +++P YNN   + TP +      +PY   P +N P S  PY+ +P+   P
Sbjct: 409 FSNAGYSNPGNSNPGYNNAPNSNTPYNNPPNSNTPYSNPPNSNPPYSNLPYSNTPYSNAP 468

Query: 102 YS 103
            S
Sbjct: 469 LS 470

Length = 1560

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	347
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.97
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.97
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.97
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.97
KOG0286	343	consensus G-protein beta subunit [General function	99.97
KOG0286	343	consensus G-protein beta subunit [General function	99.96
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.96
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.96
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.96
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.96
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.96
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.95
KOG0266	456	consensus WD40 repeat-containing protein [General	99.95
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.95
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.95
KOG0296	399	consensus Angio-associated migratory cell protein	99.95
KOG0643	327	consensus Translation initiation factor 3, subunit	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.95
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.95
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.95
KOG0266	456	consensus WD40 repeat-containing protein [General	99.95
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.95
KOG0645	312	consensus WD40 repeat protein [General function pr	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.95
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.94
PTZ00420	568	coronin; Provisional	99.94
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.94
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.93
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.93
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.93
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.93
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.93
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.93
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.93
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.93
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.93
PLN00181	793	protein SPA1-RELATED; Provisional	99.93
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.93
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.93
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.92
KOG0289	506	consensus mRNA splicing factor [General function p	99.92
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.92
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.92
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.92
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.92
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.92
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.92
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.92
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.92
PLN00181	793	protein SPA1-RELATED; Provisional	99.91
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.91
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.91
PTZ00421	493	coronin; Provisional	99.91
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.91
PTZ00420	568	coronin; Provisional	99.91
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.91
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.91
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.91
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.9
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.9
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.9
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.9
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.9
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.9
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.9
KOG0267	825	consensus Microtubule severing protein katanin p80	99.9
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.9
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.9
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.9
KOG0641	350	consensus WD40 repeat protein [General function pr	99.9
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.9
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.9
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.89
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.89
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.89
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.89
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.89
KOG0289	506	consensus mRNA splicing factor [General function p	99.88
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.88
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.88
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.88
KOG2096	420	consensus WD40 repeat protein [General function pr	99.88
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.87
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.87
KOG0639	705	consensus Transducin-like enhancer of split protei	99.87
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.87
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.87
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.87
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.86
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.86
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.86
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.86
KOG0643	327	consensus Translation initiation factor 3, subunit	99.86
KOG0646	476	consensus WD40 repeat protein [General function pr	99.86
KOG0267	825	consensus Microtubule severing protein katanin p80	99.86
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.86
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.86
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.85
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.85
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.85
KOG1273	405	consensus WD40 repeat protein [General function pr	99.84
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.84
KOG0641	350	consensus WD40 repeat protein [General function pr	99.84
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.84
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.84
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.83
KOG0646	476	consensus WD40 repeat protein [General function pr	99.83
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.83
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.82
KOG0296	399	consensus Angio-associated migratory cell protein	99.82
KOG2048	691	consensus WD40 repeat protein [General function pr	99.82
KOG2096	420	consensus WD40 repeat protein [General function pr	99.81
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.81
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.81
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.81
KOG4328	498	consensus WD40 protein [Function unknown]	99.8
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.8
KOG2055	514	consensus WD40 repeat protein [General function pr	99.8
KOG1274	933	consensus WD40 repeat protein [General function pr	99.8
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.8
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.8
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.79
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.79
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.79
KOG0639	705	consensus Transducin-like enhancer of split protei	99.79
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.78
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.78
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.77
KOG1539	910	consensus WD repeat protein [General function pred	99.77
KOG1274	933	consensus WD40 repeat protein [General function pr	99.76
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.75
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.75
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.75
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.75
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.75
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.75
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.74
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.73
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.73
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.73
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.73
KOG1539	910	consensus WD repeat protein [General function pred	99.72
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.72
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.72
KOG1188	376	consensus WD40 repeat protein [General function pr	99.71
KOG2048	691	consensus WD40 repeat protein [General function pr	99.71
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.7
KOG0649	325	consensus WD40 repeat protein [General function pr	99.7
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.7
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.7
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.69
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.68
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.68
KOG1188	376	consensus WD40 repeat protein [General function pr	99.67
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.67
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.67
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.66
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.65
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.65
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.64
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.63
KOG2055	514	consensus WD40 repeat protein [General function pr	99.63
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.62
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.62
KOG1273	405	consensus WD40 repeat protein [General function pr	99.62
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.62
KOG4328	498	consensus WD40 protein [Function unknown]	99.62
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.61
KOG1310	758	consensus WD40 repeat protein [General function pr	99.61
KOG0649	325	consensus WD40 repeat protein [General function pr	99.61
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.6
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.59
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.59
KOG4227	609	consensus WD40 repeat protein [General function pr	99.58
COG2319	466	FOG: WD40 repeat [General function prediction only	99.57
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.55
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.55
COG2319	466	FOG: WD40 repeat [General function prediction only	99.54
KOG1310	758	consensus WD40 repeat protein [General function pr	99.53
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.53
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.51
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.51
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.5
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.48
KOG1963	792	consensus WD40 repeat protein [General function pr	99.46
KOG1963	792	consensus WD40 repeat protein [General function pr	99.46
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.46
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.46
KOG2139	445	consensus WD40 repeat protein [General function pr	99.45
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.45
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.44
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.43
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.42
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.42
PRK11028	330	6-phosphogluconolactonase; Provisional	99.42
PRK01742	429	tolB translocation protein TolB; Provisional	99.41
KOG2139	445	consensus WD40 repeat protein [General function pr	99.4
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.4
PRK01742	429	tolB translocation protein TolB; Provisional	99.39
KOG4227	609	consensus WD40 repeat protein [General function pr	99.39
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.39
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.37
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.35
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.34
PRK11028	330	6-phosphogluconolactonase; Provisional	99.32
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.32
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.32
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.3
PRK05137	435	tolB translocation protein TolB; Provisional	99.29
KOG4547	541	consensus WD40 repeat-containing protein [General	99.29
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.28
PRK04922	433	tolB translocation protein TolB; Provisional	99.27
PRK02889	427	tolB translocation protein TolB; Provisional	99.26
KOG1334	559	consensus WD40 repeat protein [General function pr	99.25
PRK05137	435	tolB translocation protein TolB; Provisional	99.24
PRK03629	429	tolB translocation protein TolB; Provisional	99.23
PRK02889	427	tolB translocation protein TolB; Provisional	99.23
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.23
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.21
KOG2321	703	consensus WD40 repeat protein [General function pr	99.21
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.2
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.19
PRK03629	429	tolB translocation protein TolB; Provisional	99.19
PRK04922	433	tolB translocation protein TolB; Provisional	99.18
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.17
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.16
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.15
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.06
KOG2321	703	consensus WD40 repeat protein [General function pr	99.05
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.04
PRK00178	430	tolB translocation protein TolB; Provisional	99.03
KOG2695	425	consensus WD40 repeat protein [General function pr	99.03
PRK04792	448	tolB translocation protein TolB; Provisional	98.98
PRK00178	430	tolB translocation protein TolB; Provisional	98.97
KOG4547	541	consensus WD40 repeat-containing protein [General	98.97
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.94
PRK04792	448	tolB translocation protein TolB; Provisional	98.94
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.94
KOG1334	559	consensus WD40 repeat protein [General function pr	98.93
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.92
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.9
PRK01029	428	tolB translocation protein TolB; Provisional	98.9
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.89
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.87
PRK01029	428	tolB translocation protein TolB; Provisional	98.82
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.82
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.8
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.8
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.77
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	98.77
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.76
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.75
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.75
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.74
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.72
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.71
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.7
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.69
COG4946	668	Uncharacterized protein related to the periplasmic	98.69
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.66
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.64
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.54
KOG2315	566	consensus Predicted translation initiation factor	98.54
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.54
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.52
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.5
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.47
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.46
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.44
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.44
PRK04043	419	tolB translocation protein TolB; Provisional	98.4
KOG2695	425	consensus WD40 repeat protein [General function pr	98.37
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.37
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.36
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.35
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.34
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.33
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.33
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.32
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.3
PRK04043	419	tolB translocation protein TolB; Provisional	98.24
COG4946	668	Uncharacterized protein related to the periplasmic	98.22
KOG2315	566	consensus Predicted translation initiation factor	98.21
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.19
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.18
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.17
KOG2314	698	consensus Translation initiation factor 3, subunit	98.17
KOG3621	726	consensus WD40 repeat-containing protein [General	98.09
KOG2314	698	consensus Translation initiation factor 3, subunit	98.08
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.08
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.07
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.06
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.06
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.02
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.98
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.96
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.86
KOG3621	726	consensus WD40 repeat-containing protein [General	97.86
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.85
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.84
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.81
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.8
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.76
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.71
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.66
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.64
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.61
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.6
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.6
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.59
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.58
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.58
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.55
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.54
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.53
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.49
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.48
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.45
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.38
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.34
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.3
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.23
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.21
KOG2395	644	consensus Protein involved in vacuole import and d	97.16
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.16
PRK13616	591	lipoprotein LpqB; Provisional	97.15
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.11
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.1
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.07
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.04
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.98
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.97
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.91
KOG2444	238	consensus WD40 repeat protein [General function pr	96.89
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.87
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.83
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.72
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	96.7
PRK02888	635	nitrous-oxide reductase; Validated	96.67
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.66
PRK13616	591	lipoprotein LpqB; Provisional	96.59
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.57
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.53
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.52
KOG2444	238	consensus WD40 repeat protein [General function pr	96.49
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.48
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.44
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.43
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.38
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.25
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.16
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.13
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.99
COG3391	381	Uncharacterized conserved protein [Function unknow	95.81
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.76
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	95.69
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.6
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.43
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.24
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.11
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	94.99
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.96
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.95
COG3391	381	Uncharacterized conserved protein [Function unknow	94.95
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	94.94
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.91
PRK02888	635	nitrous-oxide reductase; Validated	94.9
KOG2247	615	consensus WD40 repeat-containing protein [General	94.78
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.72
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	94.58
KOG2395	644	consensus Protein involved in vacuole import and d	94.44
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.29
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.28
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.05
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.98
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	93.88
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	93.86
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.84
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.59
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.49
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.45
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	93.35
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	93.14
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	93.04
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.97
PHA02713	557	hypothetical protein; Provisional	92.97
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	92.97
KOG2377	657	consensus Uncharacterized conserved protein [Funct	92.96
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.96
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	92.81
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	92.6
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	92.13
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.1
PRK13684	334	Ycf48-like protein; Provisional	92.06
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	91.82
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	91.73
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	91.72
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	91.45
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	90.85
COG5167	776	VID27 Protein involved in vacuole import and degra	90.82
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	90.81
PHA03098	534	kelch-like protein; Provisional	90.8
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	90.51
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.33
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	90.12
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	89.96
PHA02713	557	hypothetical protein; Provisional	89.81
PLN00033	398	photosystem II stability/assembly factor; Provisio	89.68
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	89.22
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	88.71
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	88.38
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	88.16
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	87.49
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	86.9
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	86.48
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	86.41
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	85.91
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	85.76
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	85.2
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	85.19
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	84.5
KOG2247	615	consensus WD40 repeat-containing protein [General	84.37
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	84.23
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	83.41
KOG2377	657	consensus Uncharacterized conserved protein [Funct	83.08
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	82.48
KOG3522	925	consensus Predicted guanine nucleotide exchange fa	81.85
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	81.25
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	80.48
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	80.43

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.6e-35  Score=253.74  Aligned_cols=196  Identities=18%  Similarity=0.298  Sum_probs=180.0

Q ss_pred             ceeEeeeeccccEEEEeec----CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 043707          114 GLIGSIVRKEGHIYSLAAS----GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI  187 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~~----~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~v  187 (347)
                      .++.++.+|.+.|.++.|.    +..++||+.||+|++|+..  ..+..+.+|...|..++|+|+|++|+|++.|.+-|+
T Consensus       208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRl  287 (459)
T KOG0272|consen  208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRL  287 (459)
T ss_pred             ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhh
Confidence            4688999999999999975    4489999999999999855  568899999999999999999999999999999999


Q ss_pred             EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 043707          188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC  267 (347)
Q Consensus       188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~  267 (347)
                      ||++++.......                                +|...|.+++|++||.++++|+.|..-+|||++++
T Consensus       288 WD~~tk~ElL~QE--------------------------------GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtg  335 (459)
T KOG0272|consen  288 WDLETKSELLLQE--------------------------------GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTG  335 (459)
T ss_pred             cccccchhhHhhc--------------------------------ccccccceeEecCCCceeeccCccchhheeecccC
Confidence            9999987554433                                69999999999999999999999999999999999


Q ss_pred             EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEcc-CCCEEEEecCC
Q 043707          268 KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQ-ESAVVYCGSSD  345 (347)
Q Consensus       268 ~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~sgs~D  345 (347)
                      +++..+.+|...|..|.|+|+| .||||+.|++++|||++...      .+.++.+|..-|+.|+|.| .|.+|+++|.|
T Consensus       336 r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~------~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD  409 (459)
T KOG0272|consen  336 RCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS------ELYTIPAHSNLVSQVKYSPQEGYFLVTASYD  409 (459)
T ss_pred             cEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccc------cceecccccchhhheEecccCCeEEEEcccC
Confidence            9999999999999999999999 89999999999999998433      5888999999999999998 67999999999


Q ss_pred             CC
Q 043707          346 GL  347 (347)
Q Consensus       346 G~  347 (347)
                      ++
T Consensus       410 ~t  411 (459)
T KOG0272|consen  410 NT  411 (459)
T ss_pred             cc
Confidence            75

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1e-34  Score=245.90  Aligned_cols=270  Identities=20%  Similarity=0.314  Sum_probs=209.6

Q ss_pred             CCCCCCCCCccccCCCCCCCCC----CCCCCCC-CCCCCCCCcccccc--------------cceeEeeeeccccEEEEe
Q 043707           70 TPTSGEASPYLMSPWNNQPVSP----YTKSPWL-MPPYSPNENLLSSC--------------NGLIGSIVRKEGHIYSLA  130 (347)
Q Consensus        70 ~~~~~~~s~~~~~~~~~~~~~~----~~~~~~~-~~~~~p~~~~~~~~--------------~~~i~~l~~h~~~V~~l~  130 (347)
                      .++...+-+.++..|.....-|    .....|. ...|+|+|+.+++.              ......|.+|...|++++
T Consensus       128 ~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~La  207 (480)
T KOG0271|consen  128 SRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALA  207 (480)
T ss_pred             ceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEe
Confidence            3555666678888887622222    1123343 34799999887653              235678999999999999


Q ss_pred             ec-------CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeee-
Q 043707          131 AS-------GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKR-  200 (347)
Q Consensus       131 ~~-------~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~-  200 (347)
                      |.       .++|++++.||.|+|||+.  +++..+.+|+.+|+|++|-.+| +|++|+.|++|++|+...+....... 
T Consensus       208 wep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkG  286 (480)
T KOG0271|consen  208 WEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKG  286 (480)
T ss_pred             ecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcc
Confidence            75       4589999999999999955  5788999999999999998877 99999999999999998865321110 


Q ss_pred             -----------------eccc-c------------------------cccceEEeccCCCeEEEEeecc----eeeeeec
Q 043707          201 -----------------VGSL-P------------------------TFKDYVKSSVNPKNYVEVRRNR----NVLKIRH  234 (347)
Q Consensus       201 -----------------~~~~-~------------------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~h  234 (347)
                                       .+.+ +                        ...+.+.+..+...++-.....    .....+|
T Consensus       287 HahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgH  366 (480)
T KOG0271|consen  287 HAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGH  366 (480)
T ss_pred             cchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhch
Confidence                             0000 0                        0011233333333333222111    1245689


Q ss_pred             CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccce
Q 043707          235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTK  313 (347)
Q Consensus       235 ~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~  313 (347)
                      ...|+.+.|+||+.++++++.|..|++||.++|+.+.+|++|-++|..++|+.|. +|++|+.|.+++||++++.+    
T Consensus       367 q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK----  442 (480)
T KOG0271|consen  367 QALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK----  442 (480)
T ss_pred             hhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee----
Confidence            9999999999999999999999999999999999999999999999999999997 88999999999999998443    


Q ss_pred             eeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          314 HFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       314 ~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                        +.+.+.+|...|.++.|+|||..+++|+.|.
T Consensus       443 --l~~DLpGh~DEVf~vDwspDG~rV~sggkdk  473 (480)
T KOG0271|consen  443 --LKQDLPGHADEVFAVDWSPDGQRVASGGKDK  473 (480)
T ss_pred             --ecccCCCCCceEEEEEecCCCceeecCCCce
Confidence              7889999999999999999999999999985

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.4e-34  Score=240.14  Aligned_cols=201  Identities=22%  Similarity=0.337  Sum_probs=172.7

Q ss_pred             eeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeC--CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEec
Q 043707          115 LIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKN--LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKV  190 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~  190 (347)
                      .-.++.+|.+.|.|+.|+  |..|++|+.|.++|+||.  .....+.++|...|.|++|+|||+.|++|+.||+|++||-
T Consensus       107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp  186 (480)
T KOG0271|consen  107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP  186 (480)
T ss_pred             eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence            456788999999999875  679999999999999995  4668889999999999999999999999999999999999


Q ss_pred             CCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC-----CCCEEEEEeCCCcEEEEeCC
Q 043707          191 SRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA-----EQGLLYSGSWDKTLKVWRIS  265 (347)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-----~~~~l~s~s~dg~i~vwdl~  265 (347)
                      +++++.....                               .+|...|++++|.|     ..++|++++.||.++|||+.
T Consensus       187 ktg~~~g~~l-------------------------------~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~  235 (480)
T KOG0271|consen  187 KTGQQIGRAL-------------------------------RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK  235 (480)
T ss_pred             CCCCcccccc-------------------------------cCcccceeEEeecccccCCCccceecccCCCCEEEEEcc
Confidence            9887543322                               25999999999987     46799999999999999999


Q ss_pred             CCEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCc-----------------------------------
Q 043707          266 DCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGK-----------------------------------  310 (347)
Q Consensus       266 ~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~-----------------------------------  310 (347)
                      .++++..+.+|..+|+|+.|.-+++|++|+.|++|++|+...+.-                                   
T Consensus       236 ~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~  315 (480)
T KOG0271|consen  236 LGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPK  315 (480)
T ss_pred             CceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCC
Confidence            999999999999999999999999999999999999999864210                                   


Q ss_pred             --------------------------------------cceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          311 --------------------------------------GTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       311 --------------------------------------~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                                                            .....++..+.+|+.-|+.+.|+||+++||++|.|.
T Consensus       316 ~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk  389 (480)
T KOG0271|consen  316 SFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK  389 (480)
T ss_pred             ChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccc
Confidence                                                  001123445678888999999999999999999875

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.5e-32  Score=250.54  Aligned_cols=196  Identities=19%  Similarity=0.381  Sum_probs=178.0

Q ss_pred             cceeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707          113 NGLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW  188 (347)
Q Consensus       113 ~~~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw  188 (347)
                      .+...++.+|.++|+...+  +.++|+++++|++||+|.+.  ..+..+++|..+|++++|+|.|-+||||+.|++-++|
T Consensus       441 ~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLW  520 (707)
T KOG0263|consen  441 SGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLW  520 (707)
T ss_pred             CceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeee
Confidence            4567779999999998876  56799999999999999854  5677889999999999999999999999999999999


Q ss_pred             ecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCE
Q 043707          189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK  268 (347)
Q Consensus       189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~  268 (347)
                      ..+...+...                                +.+|...|.|+.|+|+..++++|+.|.++++||+.+|.
T Consensus       521 s~d~~~PlRi--------------------------------faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~  568 (707)
T KOG0263|consen  521 STDHNKPLRI--------------------------------FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN  568 (707)
T ss_pred             ecccCCchhh--------------------------------hcccccccceEEECCcccccccCCCCceEEEEEcCCCc
Confidence            9887553222                                22699999999999999999999999999999999999


Q ss_pred             EEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          269 CLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       269 ~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      .++.|.+|.++|.+++|+|+| +|++|+.||.|++||+..+.      ++..+.+|.+.|.+|.|+.+|..||+||.|.
T Consensus       569 ~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~------~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dn  641 (707)
T KOG0263|consen  569 SVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS------LVKQLKGHTGTIYSLSFSRDGNVLASGGADN  641 (707)
T ss_pred             EEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc------chhhhhcccCceeEEEEecCCCEEEecCCCC
Confidence            999999999999999999999 99999999999999998543      7889999999999999999999999999986

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=7.2e-33  Score=237.42  Aligned_cols=196  Identities=23%  Similarity=0.271  Sum_probs=178.4

Q ss_pred             ceeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707          114 GLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK  189 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd  189 (347)
                      .++..|.+|...|..++|  +|++|+|++.|.+-++||+.  .++....+|...|.+++|.|||..++||+.|..-||||
T Consensus       252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWD  331 (459)
T KOG0272|consen  252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWD  331 (459)
T ss_pred             cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheee
Confidence            578899999999988775  69999999999999999965  44666789999999999999999999999999999999


Q ss_pred             cCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEE
Q 043707          190 VSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC  269 (347)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~  269 (347)
                      +++++.+..                                +.+|..+|..|+|+|+|..|++|+.|++++|||++..++
T Consensus       332 lRtgr~im~--------------------------------L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~  379 (459)
T KOG0272|consen  332 LRTGRCIMF--------------------------------LAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE  379 (459)
T ss_pred             cccCcEEEE--------------------------------ecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc
Confidence            999974322                                236999999999999999999999999999999999999


Q ss_pred             EEEEecCCCcEEEEEeCCC-C-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          270 LESINAHDDAINSVVAGFD-S-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       270 ~~~~~~h~~~v~~i~~~~~-~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      +.++.+|.+-|+.|.|.|+ | +|++++.|++++||..+.      ..+++.+.+|++.|.++..++++.++++++.|.+
T Consensus       380 ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~------~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT  453 (459)
T KOG0272|consen  380 LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT------WSPLKSLAGHEGKVISLDISPDSQAIATSSFDRT  453 (459)
T ss_pred             ceecccccchhhheEecccCCeEEEEcccCcceeeecCCC------cccchhhcCCccceEEEEeccCCceEEEeccCce
Confidence            9999999999999999995 4 999999999999998874      3489999999999999999999999999999975

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.1e-31  Score=232.97  Aligned_cols=217  Identities=25%  Similarity=0.370  Sum_probs=184.6

Q ss_pred             ccEEEEeec--CCEEEEecCCCcEEEEeCC-CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeee
Q 043707          124 GHIYSLAAS--GDLLYTGSDSKNIRVWKNL-KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKR  200 (347)
Q Consensus       124 ~~V~~l~~~--~~~l~tg~~dg~I~vwd~~-~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~  200 (347)
                      ..|++++|+  |.+||+|..||.+++|+.. .....+..|+++|.++.|+..|++|++++.||++.+||..++.......
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~  315 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE  315 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee
Confidence            359999997  8899999999999999954 6678889999999999999999999999999999999999887665555


Q ss_pred             ecccccc-------cceEEeccCCCeEE-EEe-ecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEE
Q 043707          201 VGSLPTF-------KDYVKSSVNPKNYV-EVR-RNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE  271 (347)
Q Consensus       201 ~~~~~~~-------~~~~~~~~~~~~~~-~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~  271 (347)
                      ....+..       ..|+.+..++...+ .+. ......+.+|.+.|.+|.|+|.+.+|++++.|++++||......+..
T Consensus       316 ~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~  395 (524)
T KOG0273|consen  316 FHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH  395 (524)
T ss_pred             eccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchh
Confidence            5544422       23344444433333 222 33445677899999999999999999999999999999999999999


Q ss_pred             EEecCCCcEEEEEeCCCC----------EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEE
Q 043707          272 SINAHDDAINSVVAGFDS----------LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYC  341 (347)
Q Consensus       272 ~~~~h~~~v~~i~~~~~~----------~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s  341 (347)
                      .+.+|...|..+.|+|.+          .+++++.|++|++||+..+      .++..+..|+.+|.+|+|+|+|++||+
T Consensus       396 ~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g------v~i~~f~kH~~pVysvafS~~g~ylAs  469 (524)
T KOG0273|consen  396 DLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG------VPIHTLMKHQEPVYSVAFSPNGRYLAS  469 (524)
T ss_pred             hhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC------ceeEeeccCCCceEEEEecCCCcEEEe
Confidence            999999999999999964          7899999999999999844      378889999999999999999999999


Q ss_pred             ecCCC
Q 043707          342 GSSDG  346 (347)
Q Consensus       342 gs~DG  346 (347)
                      |+.||
T Consensus       470 Gs~dg  474 (524)
T KOG0273|consen  470 GSLDG  474 (524)
T ss_pred             cCCCC
Confidence            99998

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.97  E-value=2.6e-31  Score=225.02  Aligned_cols=229  Identities=19%  Similarity=0.321  Sum_probs=182.9

Q ss_pred             CCCCCCCCCCCCCCCCCCcccccccceeEeeeeccccEEEEeecC---CEEEEecCCCcEEEEeCC-----CcceeeecC
Q 043707           89 VSPYTKSPWLMPPYSPNENLLSSCNGLIGSIVRKEGHIYSLAASG---DLLYTGSDSKNIRVWKNL-----KEFSGFKSN  160 (347)
Q Consensus        89 ~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~l~~h~~~V~~l~~~~---~~l~tg~~dg~I~vwd~~-----~~~~~~~~h  160 (347)
                      +..+...+.+...-.|....-.....++.++.+|++.-++|+|++   ..|++|..-+.|++|...     .....|.+|
T Consensus       177 V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH  256 (440)
T KOG0302|consen  177 VQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGH  256 (440)
T ss_pred             EEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCcccccc
Confidence            444444444444444444333356678999999999999999985   368899999999999743     234567789


Q ss_pred             CCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCee
Q 043707          161 SGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVS  239 (347)
Q Consensus       161 ~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  239 (347)
                      +..|..|+|+| +...|++|+.||+|+|||++.+........                              ..|...|+
T Consensus       257 ~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~------------------------------kAh~sDVN  306 (440)
T KOG0302|consen  257 TKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST------------------------------KAHNSDVN  306 (440)
T ss_pred             ccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe------------------------------eccCCcee
Confidence            99999999999 567999999999999999998854332222                              25999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCC---CEEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCc----
Q 043707          240 CLSLNAEQGLLYSGSWDKTLKVWRISD---CKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGK----  310 (347)
Q Consensus       240 ~l~~~~~~~~l~s~s~dg~i~vwdl~~---~~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~----  310 (347)
                      .|+|+....+|++|+.||+++|||+|+   ++++..|+.|..+|++|.|+|..  .|++++.|.+|.+||+.....    
T Consensus       307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~  386 (440)
T KOG0302|consen  307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI  386 (440)
T ss_pred             eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence            999999888999999999999999986   46889999999999999999864  999999999999999986543    


Q ss_pred             ------cceeeehhhhhccC--CcEEEEEEccCC-CEEEEecCCCC
Q 043707          311 ------GTKHFLAQVLLKQE--NAITALAVNQES-AVVYCGSSDGL  347 (347)
Q Consensus       311 ------~~~~~~~~~~~~h~--~~V~~l~~~p~~-~~l~sgs~DG~  347 (347)
                            .....+.+.++.|.  ..|..|+|+++. .+|++.+.||+
T Consensus       387 ~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf  432 (440)
T KOG0302|consen  387 DQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF  432 (440)
T ss_pred             ccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence                  11234566777884  469999999976 89999999985

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.97  E-value=3.2e-30  Score=210.55  Aligned_cols=194  Identities=23%  Similarity=0.422  Sum_probs=170.0

Q ss_pred             eeEeeeeccccEEEEee---cCCEEEEecCCCcEEEEeCC-------CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCc
Q 043707          115 LIGSIVRKEGHIYSLAA---SGDLLYTGSDSKNIRVWKNL-------KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGK  184 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~---~~~~l~tg~~dg~I~vwd~~-------~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~  184 (347)
                      +..++++|.+.|.+++-   +.+.|++++.|.+|.+|++.       ...+.+.+|...|..++.+++|++.++++.|++
T Consensus         7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~   86 (315)
T KOG0279|consen    7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT   86 (315)
T ss_pred             eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence            56789999999999984   36799999999999999742       447789999999999999999999999999999


Q ss_pred             EEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 043707          185 IRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI  264 (347)
Q Consensus       185 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl  264 (347)
                      +|+||+.+++..                                ..+.+|...|.+++|++|.+.+++|+.|++|++|+.
T Consensus        87 lrlWDl~~g~~t--------------------------------~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt  134 (315)
T KOG0279|consen   87 LRLWDLATGEST--------------------------------RRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNT  134 (315)
T ss_pred             EEEEEecCCcEE--------------------------------EEEEecCCceEEEEecCCCceeecCCCcceeeeeee
Confidence            999999988522                                223369999999999999999999999999999998


Q ss_pred             CCCEEEEEEecC--CCcEEEEEeCCCC---EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEE
Q 043707          265 SDCKCLESINAH--DDAINSVVAGFDS---LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVV  339 (347)
Q Consensus       265 ~~~~~~~~~~~h--~~~v~~i~~~~~~---~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l  339 (347)
                      . +.+..++..+  .+.|+|+.|+|..   +|++++.|++|++||++..+      +.+.+.+|.+-|+.++++|||..+
T Consensus       135 ~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~------l~~~~~gh~~~v~t~~vSpDGslc  207 (315)
T KOG0279|consen  135 L-GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ------LRTTFIGHSGYVNTVTVSPDGSLC  207 (315)
T ss_pred             c-ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc------hhhccccccccEEEEEECCCCCEE
Confidence            6 4555555444  7899999999974   99999999999999998443      678889999999999999999999


Q ss_pred             EEecCCCC
Q 043707          340 YCGSSDGL  347 (347)
Q Consensus       340 ~sgs~DG~  347 (347)
                      ++|+.||.
T Consensus       208 asGgkdg~  215 (315)
T KOG0279|consen  208 ASGGKDGE  215 (315)
T ss_pred             ecCCCCce
Confidence            99999983

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.97  E-value=7e-32  Score=230.45  Aligned_cols=216  Identities=19%  Similarity=0.346  Sum_probs=185.0

Q ss_pred             CCCCCCCCCCCCCCcccccc--cc-----------eeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC-Cccee
Q 043707           93 TKSPWLMPPYSPNENLLSSC--NG-----------LIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL-KEFSG  156 (347)
Q Consensus        93 ~~~~~~~~~~~p~~~~~~~~--~~-----------~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~-~~~~~  156 (347)
                      .+.|.....|.|+|+-+...  .|           .-..+.+|+..|.++.|  ++.++++|+.+|.|++|+.. +.++.
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~  174 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI  174 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence            45666777899998754332  22           12235679999999997  58899999999999999954 55677


Q ss_pred             eecCC-CCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecC
Q 043707          157 FKSNS-GLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHY  235 (347)
Q Consensus       157 ~~~h~-~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  235 (347)
                      ++.|. ..|.+++|+|+..+|++|+.||+|+|||....+.....                                .+|.
T Consensus       175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL--------------------------------~GHg  222 (464)
T KOG0284|consen  175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL--------------------------------RGHG  222 (464)
T ss_pred             hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee--------------------------------ccCC
Confidence            77766 89999999999999999999999999999876533222                                2699


Q ss_pred             CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCcccee
Q 043707          236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKH  314 (347)
Q Consensus       236 ~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~  314 (347)
                      -.|.|+.|+|...++++|+.|..|++||.+++.|+.++..|+..|..+.|.+++ +|++++.|..++++|+++..     
T Consensus       223 wdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mk-----  297 (464)
T KOG0284|consen  223 WDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMK-----  297 (464)
T ss_pred             CCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhH-----
Confidence            999999999999999999999999999999999999999999999999999997 99999999999999999544     


Q ss_pred             eehhhhhccCCcEEEEEEccC-CCEEEEecCCC
Q 043707          315 FLAQVLLKQENAITALAVNQE-SAVVYCGSSDG  346 (347)
Q Consensus       315 ~~~~~~~~h~~~V~~l~~~p~-~~~l~sgs~DG  346 (347)
                       .++.+.+|...|+++.|+|- ..+|.+|+.||
T Consensus       298 -El~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dg  329 (464)
T KOG0284|consen  298 -ELFTYRGHKKDVTSLTWHPLNESLFTSGGSDG  329 (464)
T ss_pred             -HHHHhhcchhhheeeccccccccceeeccCCC
Confidence             47889999999999999995 48899999998

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.97  E-value=1.3e-29  Score=203.85  Aligned_cols=233  Identities=17%  Similarity=0.284  Sum_probs=186.2

Q ss_pred             ccccCCCCCCC-----CCCCCCCCCCCCCCCCCcccccc--------------cceeEeeeeccccEEEEee--cCCEEE
Q 043707           79 YLMSPWNNQPV-----SPYTKSPWLMPPYSPNENLLSSC--------------NGLIGSIVRKEGHIYSLAA--SGDLLY  137 (347)
Q Consensus        79 ~~~~~~~~~~~-----~~~~~~~~~~~~~~p~~~~~~~~--------------~~~i~~l~~h~~~V~~l~~--~~~~l~  137 (347)
                      .+...|....-     .++..+......-.|++..++..              ..++.++.+|+..|+++.|  +|++++
T Consensus        20 hTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMy   99 (311)
T KOG0315|consen   20 HTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMY   99 (311)
T ss_pred             ceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEE
Confidence            45566654222     22333333344566777666543              1278999999999998886  699999


Q ss_pred             EecCCCcEEEEeCCCc-ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccC
Q 043707          138 TGSDSKNIRVWKNLKE-FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVN  216 (347)
Q Consensus       138 tg~~dg~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (347)
                      ||++||+++|||+... .+....|..+|+++..+|+...|++|.++|.|+|||+...........               
T Consensus       100 TgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP---------------  164 (311)
T KOG0315|consen  100 TGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP---------------  164 (311)
T ss_pred             ecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCC---------------
Confidence            9999999999997643 333445779999999999999999999999999999987643222211               


Q ss_pred             CCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC------CEEEEEEecCCCcEEEEEeCCCC-
Q 043707          217 PKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD------CKCLESINAHDDAINSVVAGFDS-  289 (347)
Q Consensus       217 ~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~------~~~~~~~~~h~~~v~~i~~~~~~-  289 (347)
                                      .....|.++...|||.+|+.+...|++++|++-.      .+++.++++|...+..+.++||+ 
T Consensus       165 ----------------e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k  228 (311)
T KOG0315|consen  165 ----------------EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK  228 (311)
T ss_pred             ----------------CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCc
Confidence                            2456799999999999999999999999999854      35788899999999999999998 


Q ss_pred             EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          290 LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       290 ~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      +|++++.|.+++||+.+..-     .+...+.+|+.++++.+|+.|+++|++|+.|++
T Consensus       229 ~lat~ssdktv~iwn~~~~~-----kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~  281 (311)
T KOG0315|consen  229 YLATCSSDKTVKIWNTDDFF-----KLELVLTGHQRWVWDCAFSADGEYLVTASSDHT  281 (311)
T ss_pred             EEEeecCCceEEEEecCCce-----eeEEEeecCCceEEeeeeccCccEEEecCCCCc
Confidence            99999999999999998542     256778899999999999999999999999974

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.97  E-value=3.1e-30  Score=217.15  Aligned_cols=208  Identities=22%  Similarity=0.409  Sum_probs=182.0

Q ss_pred             CCCCCCCCCCCCcccccccceeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEe
Q 043707           95 SPWLMPPYSPNENLLSSCNGLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIIT  170 (347)
Q Consensus        95 ~~~~~~~~~p~~~~~~~~~~~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~s  170 (347)
                      +.+..|.|...-++       -+.+.+|.+.|.|++.+  ..+|++|+.|++|+|||+.  +...++.+|...|..++++
T Consensus       130 ~~~~rPeWHapwKl-------~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS  202 (460)
T KOG0285|consen  130 SRMPRPEWHAPWKL-------YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVS  202 (460)
T ss_pred             ccCCCccccCccee-------hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeec
Confidence            34556666665554       56788999999998865  5699999999999999965  5567888999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEE
Q 043707          171 GDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLL  250 (347)
Q Consensus       171 p~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l  250 (347)
                      +-..|+++++.|+.|+.||++..+.+....                                +|-..|.|++.+|.-..|
T Consensus       203 ~rHpYlFs~gedk~VKCwDLe~nkvIR~Yh--------------------------------GHlS~V~~L~lhPTldvl  250 (460)
T KOG0285|consen  203 KRHPYLFSAGEDKQVKCWDLEYNKVIRHYH--------------------------------GHLSGVYCLDLHPTLDVL  250 (460)
T ss_pred             ccCceEEEecCCCeeEEEechhhhhHHHhc--------------------------------cccceeEEEeccccceeE
Confidence            988899999999999999999887544332                                699999999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCC-CCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEE
Q 043707          251 YSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGF-DSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITA  329 (347)
Q Consensus       251 ~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~-~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~  329 (347)
                      ++|+.|.+++|||+++...+..+.+|..+|..+.+.| ++.+++|+.|++|++||++.+.      ....+..|...|.+
T Consensus       251 ~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk------t~~tlt~hkksvra  324 (460)
T KOG0285|consen  251 VTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK------TMITLTHHKKSVRA  324 (460)
T ss_pred             EecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCc------eeEeeecccceeeE
Confidence            9999999999999999999999999999999999987 5699999999999999998554      46677889999999


Q ss_pred             EEEccCCCEEEEecCCCC
Q 043707          330 LAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       330 l~~~p~~~~l~sgs~DG~  347 (347)
                      ++.+|....+|+++.|.+
T Consensus       325 l~lhP~e~~fASas~dni  342 (460)
T KOG0285|consen  325 LCLHPKENLFASASPDNI  342 (460)
T ss_pred             EecCCchhhhhccCCccc
Confidence            999999999999998863

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=5.9e-29  Score=202.43  Aligned_cols=200  Identities=22%  Similarity=0.329  Sum_probs=172.5

Q ss_pred             eeEeeeeccccEEEEeecCC---EEEEecCCCcEEEEeCCC-----ccee-eecCCCCeeEEEEeCCCCEEEEEeCCCcE
Q 043707          115 LIGSIVRKEGHIYSLAASGD---LLYTGSDSKNIRVWKNLK-----EFSG-FKSNSGLVKAIIITGDSNKIFTGHQDGKI  185 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~~~~---~l~tg~~dg~I~vwd~~~-----~~~~-~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I  185 (347)
                      +++.+.+|++.+..+++++.   +||+|+.|+.|++|+...     +... -.+|+..|..++|+|.|++|++|+.|.++
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~   85 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV   85 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence            47889999999999998644   899999999999999663     1111 23699999999999999999999999999


Q ss_pred             EEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 043707          186 RIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS  265 (347)
Q Consensus       186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~  265 (347)
                      .||.-..++....                              ..+.+|...|.|++|+++|++|+++++|+.+-||.+.
T Consensus        86 ~Iw~k~~~efecv------------------------------~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d  135 (312)
T KOG0645|consen   86 VIWKKEDGEFECV------------------------------ATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEID  135 (312)
T ss_pred             EEeecCCCceeEE------------------------------eeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEec
Confidence            9998776543221                              1233799999999999999999999999999999986


Q ss_pred             C---CEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEE
Q 043707          266 D---CKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYC  341 (347)
Q Consensus       266 ~---~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s  341 (347)
                      .   .+++..++.|...|..+.|+|.. +|++++.|++|++|+-..   .....+.+++.+|...|.+++|++.|..|++
T Consensus       136 eddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~---dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s  212 (312)
T KOG0645|consen  136 EDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED---DDDWECVQTLDGHENTVWSLAFDNIGSRLVS  212 (312)
T ss_pred             CCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecC---CCCeeEEEEecCccceEEEEEecCCCceEEE
Confidence            3   46888999999999999999964 999999999999998864   2367789999999999999999999999999


Q ss_pred             ecCCCC
Q 043707          342 GSSDGL  347 (347)
Q Consensus       342 gs~DG~  347 (347)
                      ++.|++
T Consensus       213 ~sdD~t  218 (312)
T KOG0645|consen  213 CSDDGT  218 (312)
T ss_pred             ecCCcc
Confidence            999985

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.97  E-value=1.9e-29  Score=206.03  Aligned_cols=195  Identities=19%  Similarity=0.388  Sum_probs=165.6

Q ss_pred             ccceeEeeeeccccEEEEe--ecCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 043707          112 CNGLIGSIVRKEGHIYSLA--ASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI  187 (347)
Q Consensus       112 ~~~~i~~l~~h~~~V~~l~--~~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~v  187 (347)
                      .+..++.+.+|.-.|..+.  ++|++.++++.|+++++||+.  +..+.|.+|...|.+++|++|.++|++|+.|.+|++
T Consensus        52 ~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTikl  131 (315)
T KOG0279|consen   52 YGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKL  131 (315)
T ss_pred             cCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeee
Confidence            3446888999999887765  679999999999999999965  567889999999999999999999999999999999


Q ss_pred             EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC--CCEEEEEeCCCcEEEEeCC
Q 043707          188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE--QGLLYSGSWDKTLKVWRIS  265 (347)
Q Consensus       188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~dg~i~vwdl~  265 (347)
                      |++...........                               .+.+.|+|+.|+|+  ..+|+++++|+++++||++
T Consensus       132 wnt~g~ck~t~~~~-------------------------------~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~  180 (315)
T KOG0279|consen  132 WNTLGVCKYTIHED-------------------------------SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLR  180 (315)
T ss_pred             eeecccEEEEEecC-------------------------------CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccC
Confidence            99976532111110                               14789999999997  7899999999999999999


Q ss_pred             CCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707          266 DCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       266 ~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      +.+....+.+|.+.++.++++||| ++++|+.||.+.+||++..+.      .+ ...|...|.+++|+|+.-.|+.+..
T Consensus       181 ~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~------ly-sl~a~~~v~sl~fspnrywL~~at~  253 (315)
T KOG0279|consen  181 NCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN------LY-SLEAFDIVNSLCFSPNRYWLCAATA  253 (315)
T ss_pred             CcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce------eE-eccCCCeEeeEEecCCceeEeeccC
Confidence            999999999999999999999999 889999999999999984432      22 2457789999999999877766543

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.97  E-value=9.2e-29  Score=203.27  Aligned_cols=200  Identities=19%  Similarity=0.280  Sum_probs=172.9

Q ss_pred             eeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEec
Q 043707          115 LIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKV  190 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~  190 (347)
                      .-++|++|.+.|+++.|.  .++|++++.||.+.|||..  .....+.-....|..++|+|.|+.+++|+.|+...||++
T Consensus        47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l  126 (343)
T KOG0286|consen   47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL  126 (343)
T ss_pred             eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence            458899999999999985  6799999999999999944  445566667789999999999999999999999999999


Q ss_pred             CCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEE
Q 043707          191 SRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL  270 (347)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~  270 (347)
                      .+.+......+                          ...+.+|.+.+.|+.|-.| ..|++++.|.++.+||+++++.+
T Consensus       127 s~~d~~g~~~v--------------------------~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~  179 (343)
T KOG0286|consen  127 STRDAEGNVRV--------------------------SRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQT  179 (343)
T ss_pred             cccccccccee--------------------------eeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEE
Confidence            86532111111                          1112369999999999885 57889999999999999999999


Q ss_pred             EEEecCCCcEEEEEeCC-CC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          271 ESINAHDDAINSVVAGF-DS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       271 ~~~~~h~~~v~~i~~~~-~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      ..|.+|.+.|.++.++| ++ .+++|+.|+..++||++.+.      ..+.+.+|+..|++|+|.|+|.-+++|++|++
T Consensus       180 ~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~------c~qtF~ghesDINsv~ffP~G~afatGSDD~t  252 (343)
T KOG0286|consen  180 QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ------CVQTFEGHESDINSVRFFPSGDAFATGSDDAT  252 (343)
T ss_pred             EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc------eeEeecccccccceEEEccCCCeeeecCCCce
Confidence            99999999999999999 55 99999999999999999553      78999999999999999999999999999985

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.96  E-value=2e-28  Score=201.27  Aligned_cols=217  Identities=23%  Similarity=0.350  Sum_probs=185.9

Q ss_pred             CCCCCCCCC-CCCCCCcccccccc--------------------eeEeeeeccccEEEEee-cCCEEEEecCCCcEEEEe
Q 043707           92 YTKSPWLMP-PYSPNENLLSSCNG--------------------LIGSIVRKEGHIYSLAA-SGDLLYTGSDSKNIRVWK  149 (347)
Q Consensus        92 ~~~~~~~~~-~~~p~~~~~~~~~~--------------------~i~~l~~h~~~V~~l~~-~~~~l~tg~~dg~I~vwd  149 (347)
                      ...+.|.+. .|+|.|++++ ++|                    ..+.+.+|++.+.|..+ +...|+|++.|.+.-+||
T Consensus        94 pl~s~WVMtCA~sPSg~~VA-cGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWD  172 (343)
T KOG0286|consen   94 PLPSSWVMTCAYSPSGNFVA-CGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWD  172 (343)
T ss_pred             ecCceeEEEEEECCCCCeEE-ecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEE
Confidence            446667655 7999998875 322                    45668899999999987 566899999999999999


Q ss_pred             CC--CcceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeec
Q 043707          150 NL--KEFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRN  226 (347)
Q Consensus       150 ~~--~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (347)
                      ++  +....|.+|.+.|.++.++| +++.|++|+-|+..+|||++.+.....                            
T Consensus       173 ie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qt----------------------------  224 (343)
T KOG0286|consen  173 IETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQT----------------------------  224 (343)
T ss_pred             cccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEe----------------------------
Confidence            76  45778999999999999999 999999999999999999998853322                            


Q ss_pred             ceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecC--CCcEEEEEeCCCC-EEEEEeCCCcEEEE
Q 043707          227 RNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH--DDAINSVVAGFDS-LVFTGSADGTVKVW  303 (347)
Q Consensus       227 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h--~~~v~~i~~~~~~-~l~s~~~dg~I~vw  303 (347)
                          +.+|...|+.++|.|+|.-+++|++|+++++||+|..+.+..+...  ..+|++++|+-.| +|++|..|..+.||
T Consensus       225 ----F~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vW  300 (343)
T KOG0286|consen  225 ----FEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVW  300 (343)
T ss_pred             ----ecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEe
Confidence                2369999999999999999999999999999999999998888622  3579999999988 88889999999999


Q ss_pred             EcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          304 RRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       304 d~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      |.-.++      ....|.+|+..|++|..+|||..|++||.|.+
T Consensus       301 Dtlk~e------~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~  338 (343)
T KOG0286|consen  301 DTLKGE------RVGVLAGHENRVSCLGVSPDGMAVATGSWDST  338 (343)
T ss_pred             eccccc------eEEEeeccCCeeEEEEECCCCcEEEecchhHh
Confidence            996443      56778899999999999999999999998853

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.96  E-value=7.4e-29  Score=227.78  Aligned_cols=216  Identities=21%  Similarity=0.362  Sum_probs=179.8

Q ss_pred             CCCCCCCCCCCCcccccccc-------------eeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEe--CCCcceee
Q 043707           95 SPWLMPPYSPNENLLSSCNG-------------LIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWK--NLKEFSGF  157 (347)
Q Consensus        95 ~~~~~~~~~p~~~~~~~~~~-------------~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd--~~~~~~~~  157 (347)
                      .|.....|+|+.+++.++.+             .+-..++|..+|+++.++  |-++|||+.|++.++|.  .....+.+
T Consensus       452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRif  531 (707)
T KOG0263|consen  452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIF  531 (707)
T ss_pred             CceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhh
Confidence            34555578888888776654             345567999999998876  66999999999999996  45778999


Q ss_pred             ecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCC
Q 043707          158 KSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA  237 (347)
Q Consensus       158 ~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  237 (347)
                      .+|-+.|.|+.|+|+..++++|+.|.+||+||+.++.....                                +.+|..+
T Consensus       532 aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRi--------------------------------F~GH~~~  579 (707)
T KOG0263|consen  532 AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRI--------------------------------FTGHKGP  579 (707)
T ss_pred             cccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEE--------------------------------ecCCCCc
Confidence            99999999999999999999999999999999999864222                                2379999


Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCcc-----
Q 043707          238 VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG-----  311 (347)
Q Consensus       238 V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~-----  311 (347)
                      |.+|+|+|+|.+|++|+.||.|++||+..++.+..+.+|.+.|.+|.|+.+| .||+|+.|++|++||+......     
T Consensus       580 V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~  659 (707)
T KOG0263|consen  580 VTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGH  659 (707)
T ss_pred             eEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccc
Confidence            9999999999999999999999999999999999999999999999999998 9999999999999999743221     


Q ss_pred             -------------ceeeehhhhhccCCcEEEEEEccCCCEEEEe
Q 043707          312 -------------TKHFLAQVLLKQENAITALAVNQESAVVYCG  342 (347)
Q Consensus       312 -------------~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sg  342 (347)
                                   ....++..+.....+|..|.|.-..-.|+.|
T Consensus       660 ~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g  703 (707)
T KOG0263|consen  660 ISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG  703 (707)
T ss_pred             cccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence                         1122334455566789999998765555554

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=6.8e-28  Score=203.45  Aligned_cols=227  Identities=20%  Similarity=0.305  Sum_probs=183.2

Q ss_pred             ceeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCCC---cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707          114 GLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLK---EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW  188 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~~---~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw  188 (347)
                      .+...+++|+..|..+.++  |++|++++.|-.+++||..+   +++...+|...|.+++|-|.|.+|++++.|.+|+.|
T Consensus       141 ~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~W  220 (406)
T KOG0295|consen  141 ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAW  220 (406)
T ss_pred             hhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEE
Confidence            4678899999999999875  88999999999999999664   566778899999999999999999999999999999


Q ss_pred             ecCCCCCceeeeec-------ccccccceEEeccCCCeEEEEe--ecc--eeeeeecCCCeeEEEEcCC----------C
Q 043707          189 KVSRKNPSVHKRVG-------SLPTFKDYVKSSVNPKNYVEVR--RNR--NVLKIRHYDAVSCLSLNAE----------Q  247 (347)
Q Consensus       189 d~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~h~~~V~~l~~~~~----------~  247 (347)
                      ++.++.........       .......++.++.+... +.++  ...  ......|..+|.|++|.|.          +
T Consensus       221 e~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqt-l~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~  299 (406)
T KOG0295|consen  221 ECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQT-LRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATG  299 (406)
T ss_pred             ecccceeEEeccCchHhEEEEEecCCeeEEEecCCCce-EEEEEeccchhhhhhhccccceEEEEecccccCcchhhccC
Confidence            99998643322111       01111122233333222 2222  111  3455679999999999763          2


Q ss_pred             -----CEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhh
Q 043707          248 -----GLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLL  321 (347)
Q Consensus       248 -----~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~  321 (347)
                           .++.++++|++|++||+.++.|+.++.+|...|..++|+|.| +|+++..|+++++||++..      .+...+.
T Consensus       300 ~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~------~cmk~~~  373 (406)
T KOG0295|consen  300 STNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL------QCMKTLE  373 (406)
T ss_pred             CCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc------eeeeccC
Confidence                 489999999999999999999999999999999999999998 9999999999999999844      3677888


Q ss_pred             ccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          322 KQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       322 ~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      .|..-|+++.|+.+..++++|+-|.+
T Consensus       374 ah~hfvt~lDfh~~~p~VvTGsVdqt  399 (406)
T KOG0295|consen  374 AHEHFVTSLDFHKTAPYVVTGSVDQT  399 (406)
T ss_pred             CCcceeEEEecCCCCceEEeccccce
Confidence            99999999999999999999998853

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.96  E-value=2.5e-29  Score=214.91  Aligned_cols=243  Identities=23%  Similarity=0.277  Sum_probs=194.9

Q ss_pred             CC-CCCCCCCCCccccCCCCCCC-CC----CCCCCCCCCCCCCCCccccccc--c----------eeEeeeecc-ccEEE
Q 043707           68 TR-TPTSGEASPYLMSPWNNQPV-SP----YTKSPWLMPPYSPNENLLSSCN--G----------LIGSIVRKE-GHIYS  128 (347)
Q Consensus        68 ~~-~~~~~~~s~~~~~~~~~~~~-~~----~~~~~~~~~~~~p~~~~~~~~~--~----------~i~~l~~h~-~~V~~  128 (347)
                      |+ -++...++..-..+|+.+.- ..    .-.+|.-...|++++..+.+..  +          .++.+.+|. ..|.+
T Consensus       106 PeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRd  185 (464)
T KOG0284|consen  106 PEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRD  185 (464)
T ss_pred             CCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhhe
Confidence            44 33445566667788886111 00    1123333446788877654432  2          344555666 78999


Q ss_pred             Eeec--CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeeccc
Q 043707          129 LAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSL  204 (347)
Q Consensus       129 l~~~--~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~  204 (347)
                      ++++  ...++++++||+|+|||..  ++...+.+|.-.|.+++|+|....|++|+.|..|++||.+++.++....    
T Consensus       186 lafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh----  261 (464)
T KOG0284|consen  186 LAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH----  261 (464)
T ss_pred             eccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhh----
Confidence            9876  4489999999999999955  4556779999999999999998899999999999999999997544332    


Q ss_pred             ccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEE
Q 043707          205 PTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV  284 (347)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~  284 (347)
                                                  +|...|..+.|++++++|++++.|..++++|+++.+.+.++++|+..|+++.
T Consensus       262 ----------------------------~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~  313 (464)
T KOG0284|consen  262 ----------------------------GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLT  313 (464)
T ss_pred             ----------------------------hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeec
Confidence                                        4999999999999999999999999999999999999999999999999999


Q ss_pred             eCCC--CEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          285 AGFD--SLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       285 ~~~~--~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      |+|-  ++|.+|+.||.|..|.+..+..     +...-.+|...|++++|+|-|..|++|+.|.+
T Consensus       314 WhP~~~~lftsgg~Dgsvvh~~v~~~~p-----~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t  373 (464)
T KOG0284|consen  314 WHPLNESLFTSGGSDGSVVHWVVGLEEP-----LGEIPPAHDGEIWSLAYHPLGHILATGSNDRT  373 (464)
T ss_pred             cccccccceeeccCCCceEEEecccccc-----ccCCCcccccceeeeeccccceeEeecCCCcc
Confidence            9996  4999999999999999974332     44556789999999999999999999999864

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.96  E-value=1.3e-27  Score=207.83  Aligned_cols=207  Identities=21%  Similarity=0.391  Sum_probs=174.1

Q ss_pred             CCCCCCcccccc------------cceeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeC----------------
Q 043707          101 PYSPNENLLSSC------------NGLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKN----------------  150 (347)
Q Consensus       101 ~~~p~~~~~~~~------------~~~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~----------------  150 (347)
                      .|..+|.+++..            +.++.++..|+++|+++.|+  |++|++++.||++.+||.                
T Consensus       242 ~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~  321 (524)
T KOG0273|consen  242 DWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPA  321 (524)
T ss_pred             EecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCc
Confidence            677778776542            34777888899999999997  669999999999999983                


Q ss_pred             ---------------------------CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecc
Q 043707          151 ---------------------------LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGS  203 (347)
Q Consensus       151 ---------------------------~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~  203 (347)
                                                 .++..++.+|.+.|.+|.|.|.+.+|++|+.|++++||.+..........   
T Consensus       322 lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~---  398 (524)
T KOG0273|consen  322 LDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ---  398 (524)
T ss_pred             cceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh---
Confidence                                       12244577899999999999999999999999999999987654322211   


Q ss_pred             cccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCC---------CEEEEEeCCCcEEEEeCCCCEEEEEEe
Q 043707          204 LPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ---------GLLYSGSWDKTLKVWRISDCKCLESIN  274 (347)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~---------~~l~s~s~dg~i~vwdl~~~~~~~~~~  274 (347)
                                                   .|...|..+.|+|++         ..|++++.|+++++||+..+.++..|.
T Consensus       399 -----------------------------~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~  449 (524)
T KOG0273|consen  399 -----------------------------AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM  449 (524)
T ss_pred             -----------------------------hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec
Confidence                                         488899999998864         478999999999999999999999999


Q ss_pred             cCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          275 AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       275 ~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      .|+.+|.+++|+|++ ++|+|+.||.|.+|+.++.+      +.+.+.+ .+.|..|+|+.+|.+|..+-+||
T Consensus       450 kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~------l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~  515 (524)
T KOG0273|consen  450 KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK------LVKSYQG-TGGIFELCWNAAGDKLGACASDG  515 (524)
T ss_pred             cCCCceEEEEecCCCcEEEecCCCCeeEeccccchh------eeEeecC-CCeEEEEEEcCCCCEEEEEecCC
Confidence            999999999999998 99999999999999998543      3444433 45699999999999999988887

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.96  E-value=7.1e-27  Score=192.85  Aligned_cols=233  Identities=19%  Similarity=0.312  Sum_probs=184.4

Q ss_pred             eeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC---CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707          115 LIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL---KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK  189 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~---~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd  189 (347)
                      ++..+.+|+++|+.+.|  +|.+|++|+.|..|.+|+..   +....+++|.++|..+.|.++++.|++++.|.+|+.||
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD  118 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD  118 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence            46677899999999886  57899999999999999844   44667889999999999999999999999999999999


Q ss_pred             cCCCCCceeeeec-----ccc---cccceEEeccCCC--eEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcE
Q 043707          190 VSRKNPSVHKRVG-----SLP---TFKDYVKSSVNPK--NYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTL  259 (347)
Q Consensus       190 ~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i  259 (347)
                      +++++........     .++   ....++.+..+..  .+++.+............+++++.|..++..+.+|+-|+.|
T Consensus       119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~i  198 (338)
T KOG0265|consen  119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDI  198 (338)
T ss_pred             cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCce
Confidence            9999764433211     111   1112233322222  23344444455555567889999999999999999999999


Q ss_pred             EEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCc----------------------------
Q 043707          260 KVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGK----------------------------  310 (347)
Q Consensus       260 ~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~----------------------------  310 (347)
                      ++||++..+.+..+.+|.+.|+.+..+++| ++.+-+.|.+|++||++.-..                            
T Consensus       199 kvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~  278 (338)
T KOG0265|consen  199 KVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNG  278 (338)
T ss_pred             eeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCC
Confidence            999999999999999999999999999998 888999999999999873211                            


Q ss_pred             ----------------cceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          311 ----------------GTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       311 ----------------~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                                      ......+..+.+|.+.|.+++|+|....|.+++.|.+
T Consensus       279 ~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~  331 (338)
T KOG0265|consen  279 TKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKT  331 (338)
T ss_pred             CccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCce
Confidence                            0111234567899999999999999999999999864

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.95  E-value=1.4e-26  Score=186.60  Aligned_cols=201  Identities=18%  Similarity=0.307  Sum_probs=172.4

Q ss_pred             cceeEeeeeccccEEEEe--ecCCEEEEecCCCcEEEEeCC----CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEE
Q 043707          113 NGLIGSIVRKEGHIYSLA--ASGDLLYTGSDSKNIRVWKNL----KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIR  186 (347)
Q Consensus       113 ~~~i~~l~~h~~~V~~l~--~~~~~l~tg~~dg~I~vwd~~----~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~  186 (347)
                      +...+++...++.|.++.  ++++.||+++. -.||+||+.    ..+..|.+|+.-|.++.|..+|+.++||++||++|
T Consensus        30 G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~k  108 (311)
T KOG0315|consen   30 GICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVK  108 (311)
T ss_pred             CeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEE
Confidence            446788877778898877  56778888876 579999954    46889999999999999999999999999999999


Q ss_pred             EEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 043707          187 IWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD  266 (347)
Q Consensus       187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~  266 (347)
                      |||++.......                                 +.|..+|+++..+|+...|++|..+|.|+|||+.+
T Consensus       109 IWdlR~~~~qR~---------------------------------~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~  155 (311)
T KOG0315|consen  109 IWDLRSLSCQRN---------------------------------YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGE  155 (311)
T ss_pred             EEeccCcccchh---------------------------------ccCCCCcceEEecCCcceEEeecCCCcEEEEEccC
Confidence            999998432211                                 13889999999999999999999999999999998


Q ss_pred             CEEEEEEe-cCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707          267 CKCLESIN-AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       267 ~~~~~~~~-~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      ..+...+- .....|.++...||| +++++...|..++|++-.........++..+..|..-++.+-++|++++||++|+
T Consensus       156 ~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss  235 (311)
T KOG0315|consen  156 NSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS  235 (311)
T ss_pred             CccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC
Confidence            87766653 345689999999998 8888889999999999876666677788999999999999999999999999999


Q ss_pred             CCC
Q 043707          345 DGL  347 (347)
Q Consensus       345 DG~  347 (347)
                      |.+
T Consensus       236 dkt  238 (311)
T KOG0315|consen  236 DKT  238 (311)
T ss_pred             Cce
Confidence            974

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=1.7e-26  Score=215.23  Aligned_cols=197  Identities=23%  Similarity=0.407  Sum_probs=164.7

Q ss_pred             eEeeeec-cccEEEEee--cCCEEEEecCCCcEEEEeCC--C--cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707          116 IGSIVRK-EGHIYSLAA--SGDLLYTGSDSKNIRVWKNL--K--EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW  188 (347)
Q Consensus       116 i~~l~~h-~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~--~--~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw  188 (347)
                      ...+..| ...|.++.+  +|++|++++.|+.|++|+..  +  ....+.+|...|.+++|+|+++++++|+.|++|+||
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw  230 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW  230 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence            4444444 556777664  68899999999999999852  3  455668899999999999999999999999999999


Q ss_pred             ecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCE
Q 043707          189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK  268 (347)
Q Consensus       189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~  268 (347)
                      |+........                               .+.+|...|++++|+|+++++++|+.|++|+|||+++++
T Consensus       231 d~~~~~~~~~-------------------------------~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~  279 (456)
T KOG0266|consen  231 DLKDDGRNLK-------------------------------TLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE  279 (456)
T ss_pred             eccCCCeEEE-------------------------------EecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe
Confidence            9944321111                               122599999999999999999999999999999999999


Q ss_pred             EEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCC--cEEEEEEccCCCEEEEecCC
Q 043707          269 CLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQEN--AITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       269 ~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~--~V~~l~~~p~~~~l~sgs~D  345 (347)
                      ++..+.+|.+.|++++|++++ +|++++.|+.|+|||+..+...    +...+..+..  +++.++|+|++.+|+++..|
T Consensus       280 ~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d  355 (456)
T KOG0266|consen  280 CVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL----CLKLLSGAENSAPVTSVQFSPNGKYLLSASLD  355 (456)
T ss_pred             EEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee----eeecccCCCCCCceeEEEECCCCcEEEEecCC
Confidence            999999999999999999998 8889999999999999865431    3455555544  59999999999999999998


Q ss_pred             CC
Q 043707          346 GL  347 (347)
Q Consensus       346 G~  347 (347)
                      ++
T Consensus       356 ~~  357 (456)
T KOG0266|consen  356 RT  357 (456)
T ss_pred             Ce
Confidence            64

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=1.8e-27  Score=216.90  Aligned_cols=194  Identities=22%  Similarity=0.357  Sum_probs=170.8

Q ss_pred             eeEeeeeccccEEEEeec---CCEEEEecCCCcEEEEeCCC-------cce----eeecCCCCeeEEEEeCCCCEEEEEe
Q 043707          115 LIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLK-------EFS----GFKSNSGLVKAIIITGDSNKIFTGH  180 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~~-------~~~----~~~~h~~~V~~l~~sp~~~~l~s~~  180 (347)
                      +++...+|++.|.+++.+   ..+|++++.|++|++|++.+       ...    ....|...|+|++++|+...|+||+
T Consensus       403 ~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~S  482 (775)
T KOG0319|consen  403 CVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGS  482 (775)
T ss_pred             hhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecc
Confidence            456667899999999875   45999999999999998665       111    3457999999999999999999999


Q ss_pred             CCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 043707          181 QDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLK  260 (347)
Q Consensus       181 ~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~  260 (347)
                      +|++.+||+++......                                .+.+|...|.|+.|++..++++++|.|++|+
T Consensus       483 qDktaKiW~le~~~l~~--------------------------------vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvK  530 (775)
T KOG0319|consen  483 QDKTAKIWDLEQLRLLG--------------------------------VLSGHTRGVWCVSFSKNDQLLATCSGDKTVK  530 (775)
T ss_pred             cccceeeecccCceEEE--------------------------------EeeCCccceEEEEeccccceeEeccCCceEE
Confidence            99999999998443211                                1236999999999999999999999999999


Q ss_pred             EEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEE
Q 043707          261 VWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVV  339 (347)
Q Consensus       261 vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l  339 (347)
                      ||.+.++.|+++|.+|...|..+.|-.++ .|++++.||.|++|++.+..      +...+.+|...|++++.++...++
T Consensus       531 IW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e------C~~tlD~H~DrvWaL~~~~~~~~~  604 (775)
T KOG0319|consen  531 IWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE------CEMTLDAHNDRVWALSVSPLLDMF  604 (775)
T ss_pred             EEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh------hhhhhhhccceeEEEeecCcccee
Confidence            99999999999999999999999997776 99999999999999998543      799999999999999999999999


Q ss_pred             EEecCCC
Q 043707          340 YCGSSDG  346 (347)
Q Consensus       340 ~sgs~DG  346 (347)
                      ++|+.||
T Consensus       605 ~tgg~Dg  611 (775)
T KOG0319|consen  605 VTGGGDG  611 (775)
T ss_pred             EecCCCe
Confidence            9999998

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.95  E-value=3e-28  Score=204.62  Aligned_cols=191  Identities=23%  Similarity=0.440  Sum_probs=156.7

Q ss_pred             eeEeeeeccccEEEEeecCCEEEEecCCCcEEEEeC--CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCC
Q 043707          115 LIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKN--LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSR  192 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~~~~~l~tg~~dg~I~vwd~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~  192 (347)
                      .+..+.+|+|.|.|+.++.+.+++|+.|.+|+|||.  .+.+.++.+|...|..+.|+..  ++++++.|.+++|||+..
T Consensus       229 c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng--~mvtcSkDrsiaVWdm~s  306 (499)
T KOG0281|consen  229 CLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNG--YMVTCSKDRSIAVWDMAS  306 (499)
T ss_pred             HHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCC--EEEEecCCceeEEEeccC
Confidence            455677888888888888888888888888888874  3567777788888888888654  888888888888888876


Q ss_pred             CCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEE
Q 043707          193 KNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES  272 (347)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~  272 (347)
                      ........                             .+.+|...|+.+.|+.  +++++++.|.+|++|++.+++++.+
T Consensus       307 ps~it~rr-----------------------------VLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~efvRt  355 (499)
T KOG0281|consen  307 PTDITLRR-----------------------------VLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTCEFVRT  355 (499)
T ss_pred             chHHHHHH-----------------------------HHhhhhhheeeecccc--ceEEEecCCceEEEEeccceeeehh
Confidence            54221111                             2336999999999964  5999999999999999999999999


Q ss_pred             EecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          273 INAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       273 ~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      +.+|+..|.|+.+. +.++++|+.|.+|++||+..+.      ++..+.+|+.-|.++.|.  .+.|++|+.||+
T Consensus       356 l~gHkRGIAClQYr-~rlvVSGSSDntIRlwdi~~G~------cLRvLeGHEeLvRciRFd--~krIVSGaYDGk  421 (499)
T KOG0281|consen  356 LNGHKRGIACLQYR-DRLVVSGSSDNTIRLWDIECGA------CLRVLEGHEELVRCIRFD--NKRIVSGAYDGK  421 (499)
T ss_pred             hhcccccceehhcc-CeEEEecCCCceEEEEeccccH------HHHHHhchHHhhhheeec--Cceeeeccccce
Confidence            99999999998874 5599999999999999998543      799999999999999995  688999999985

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.95  E-value=3.2e-26  Score=193.46  Aligned_cols=229  Identities=16%  Similarity=0.240  Sum_probs=184.3

Q ss_pred             cceeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707          113 NGLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW  188 (347)
Q Consensus       113 ~~~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw  188 (347)
                      ..-+.++..|++.|++++.  +.++++||+.|..-.||+..  .....+.+|+..|.++.|+-+|.+|+||..+|.|+||
T Consensus        54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~  133 (399)
T KOG0296|consen   54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF  133 (399)
T ss_pred             ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence            3446788999999999884  56799999999999999954  4466788999999999999999999999999999999


Q ss_pred             ecCCCCCceeee--------ecccccccceEEeccCCCeEEE-Eee-cceeeeeecCCCeeEEEEcCCCCEEEEEeCCCc
Q 043707          189 KVSRKNPSVHKR--------VGSLPTFKDYVKSSVNPKNYVE-VRR-NRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKT  258 (347)
Q Consensus       189 d~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~  258 (347)
                      ++.++.......        +...|....++....++..... +.. ....++.+|..+++|=.|.|+|+.++++..||+
T Consensus       134 ~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt  213 (399)
T KOG0296|consen  134 KVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT  213 (399)
T ss_pred             EcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence            999886543321        2233433333444444443332 222 345677789999999999999999999999999


Q ss_pred             EEEEeCCCCEEEEEEec---------------------------------------------------------------
Q 043707          259 LKVWRISDCKCLESINA---------------------------------------------------------------  275 (347)
Q Consensus       259 i~vwdl~~~~~~~~~~~---------------------------------------------------------------  275 (347)
                      |++|++.+++++..+..                                                               
T Consensus       214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~  293 (399)
T KOG0296|consen  214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIP  293 (399)
T ss_pred             EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcc
Confidence            99999988766554431                                                               


Q ss_pred             --------------------------------CCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhcc
Q 043707          276 --------------------------------HDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQ  323 (347)
Q Consensus       276 --------------------------------h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h  323 (347)
                                                      |...|..+.|-+..+|++++.||.|+.||.+++.      +...+.+|
T Consensus       294 ~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~------l~~~y~GH  367 (399)
T KOG0296|consen  294 SSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQ------LKFTYTGH  367 (399)
T ss_pred             cccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccc------eEEEEecC
Confidence                                            5667888888876689999999999999998664      68889999


Q ss_pred             CCcEEEEEEccCCCEEEEecCCCC
Q 043707          324 ENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       324 ~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      ...|.+++++|+.++++++|.|++
T Consensus       368 ~~~Il~f~ls~~~~~vvT~s~D~~  391 (399)
T KOG0296|consen  368 QMGILDFALSPQKRLVVTVSDDNT  391 (399)
T ss_pred             chheeEEEEcCCCcEEEEecCCCe
Confidence            999999999999999999999975

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.95  E-value=5.5e-27  Score=190.62  Aligned_cols=230  Identities=17%  Similarity=0.235  Sum_probs=178.1

Q ss_pred             eeeeccccEEEEeec--CCEEEEecCCCcEEEEe--CCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 043707          118 SIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRK  193 (347)
Q Consensus       118 ~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd--~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~  193 (347)
                      .+.+|+.+++.+.++  |++|.+++.|.++.||-  ..+.+-++.+|+++|+|+...-+.++++||+.|.++++||++++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            467899999999975  88999999999999995  55778899999999999999999999999999999999999999


Q ss_pred             CCceeeeecccccc------cceEEeccCC-------CeEEEEee-------cc-eeeeeecCCCeeEEEEcCCCCEEEE
Q 043707          194 NPSVHKRVGSLPTF------KDYVKSSVNP-------KNYVEVRR-------NR-NVLKIRHYDAVSCLSLNAEQGLLYS  252 (347)
Q Consensus       194 ~~~~~~~~~~~~~~------~~~~~~~~~~-------~~~~~~~~-------~~-~~~~~~h~~~V~~l~~~~~~~~l~s  252 (347)
                      ++......+..-..      ..++....+.       ..++++..       .. ......+...++.+-|.|-+..|++
T Consensus        85 k~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~  164 (327)
T KOG0643|consen   85 KQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIA  164 (327)
T ss_pred             cEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEE
Confidence            87554433321111      1111111111       12223331       11 1223346788999999999999999


Q ss_pred             EeCCCcEEEEeCCCC-EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCc--------------------
Q 043707          253 GSWDKTLKVWRISDC-KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGK--------------------  310 (347)
Q Consensus       253 ~s~dg~i~vwdl~~~-~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~--------------------  310 (347)
                      |..||.|.+||++++ +.+.+.+.|...|+.|.+++|. ++++++.|.+-++||.++...                    
T Consensus       165 Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d  244 (327)
T KOG0643|consen  165 GHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLD  244 (327)
T ss_pred             ecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccc
Confidence            999999999999998 4566678899999999999997 999999999999999874321                    


Q ss_pred             -------------------cce----------eeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          311 -------------------GTK----------HFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       311 -------------------~~~----------~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                                         ..+          ...+....+|-++|++|+|+|+|+..++|++||+
T Consensus       245 ~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~  310 (327)
T KOG0643|consen  245 HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGY  310 (327)
T ss_pred             eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCce
Confidence                               000          0112235689999999999999999999999995

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.3e-27  Score=191.53  Aligned_cols=198  Identities=19%  Similarity=0.310  Sum_probs=171.1

Q ss_pred             cceeEeeeeccccEEEEeec---CCEEEEecCCCcEEEEeC--CCcceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEE
Q 043707          113 NGLIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKN--LKEFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIR  186 (347)
Q Consensus       113 ~~~i~~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~--~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~  186 (347)
                      .++|+.++.|+.+|+++.++   +..+++++-|++|++|+.  .+.+++|.+|...|+..+|+| .++.+++++.|++++
T Consensus        94 s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~  173 (311)
T KOG0277|consen   94 SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLR  173 (311)
T ss_pred             CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEE
Confidence            45788999999999999986   568888999999999984  456889999999999999999 778999999999999


Q ss_pred             EEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCC
Q 043707          187 IWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRIS  265 (347)
Q Consensus       187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~vwdl~  265 (347)
                      +||++.......                                ...|...|.|+.|+. +...|++|+.|+.|++||++
T Consensus       174 lwdvr~~gk~~~--------------------------------i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir  221 (311)
T KOG0277|consen  174 LWDVRSPGKFMS--------------------------------IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIR  221 (311)
T ss_pred             EEEecCCCceeE--------------------------------EEeccceeEeecccccCCcEEEecCCCceEEEEehh
Confidence            999986532111                                124889999999998 67899999999999999999


Q ss_pred             CCE-EEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEcc-CCCEEEE
Q 043707          266 DCK-CLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQ-ESAVVYC  341 (347)
Q Consensus       266 ~~~-~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s  341 (347)
                      ..+ ++..+.+|.-+|..++|+|..  +|++++.|-+++|||...+..     +..+...|..-|..+.|++ +..++|+
T Consensus       222 ~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds-----~~e~~~~HtEFv~g~Dws~~~~~~vAs  296 (311)
T KOG0277|consen  222 NLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS-----AIETVDHHTEFVCGLDWSLFDPGQVAS  296 (311)
T ss_pred             hccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchh-----hhhhhhccceEEeccccccccCceeee
Confidence            764 788899999999999999975  999999999999999985443     6777778999999999998 5689999


Q ss_pred             ecCCCC
Q 043707          342 GSSDGL  347 (347)
Q Consensus       342 gs~DG~  347 (347)
                      ++-|++
T Consensus       297 ~gWDe~  302 (311)
T KOG0277|consen  297 TGWDEL  302 (311)
T ss_pred             cccccc
Confidence            998864

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.95  E-value=7.6e-28  Score=209.90  Aligned_cols=203  Identities=14%  Similarity=0.271  Sum_probs=173.3

Q ss_pred             ccceeEeeeeccccEEEEeec---CCEEEEecCCCcEEEEeC---CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcE
Q 043707          112 CNGLIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKN---LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKI  185 (347)
Q Consensus       112 ~~~~i~~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~---~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I  185 (347)
                      ...++.++.+|+..|.++.|.   +.+|++|+.|+.|+||+.   .+++++|.+|..+|.+++|+.+|..|++++.|+.|
T Consensus       203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l  282 (503)
T KOG0282|consen  203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL  282 (503)
T ss_pred             cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence            567899999999999999964   679999999999999983   57799999999999999999999999999999999


Q ss_pred             EEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCC-CEEEEEeCCCcEEEEeC
Q 043707          186 RIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ-GLLYSGSWDKTLKVWRI  264 (347)
Q Consensus       186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~dg~i~vwdl  264 (347)
                      ++||+++++......                                 -...++|+.|+|++ +.+++|..|+.|+.||+
T Consensus       283 KlwDtETG~~~~~f~---------------------------------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDi  329 (503)
T KOG0282|consen  283 KLWDTETGQVLSRFH---------------------------------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDI  329 (503)
T ss_pred             eeeccccceEEEEEe---------------------------------cCCCceeeecCCCCCcEEEEecCCCcEEEEec
Confidence            999999997554433                                 34567899999987 89999999999999999


Q ss_pred             CCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCc---------------------------------
Q 043707          265 SDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGK---------------------------------  310 (347)
Q Consensus       265 ~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~---------------------------------  310 (347)
                      |+++.++.+..|-++|..|.|-+++ .+++.+.|+.++||+.+..-.                                 
T Consensus       330 Rs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i  409 (503)
T KOG0282|consen  330 RSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYI  409 (503)
T ss_pred             cchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceE
Confidence            9999999999999999999999988 999999999999999874321                                 


Q ss_pred             -------cceeeehhhhhccC--CcEEEEEEccCCCEEEEecCCCC
Q 043707          311 -------GTKHFLAQVLLKQE--NAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       311 -------~~~~~~~~~~~~h~--~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                             ..+......+.+|.  +--..+.|+|||++|++|..||.
T Consensus       410 ~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~  455 (503)
T KOG0282|consen  410 AIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGK  455 (503)
T ss_pred             EEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCcc
Confidence                   00111223455663  34678999999999999999983

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.2e-26  Score=207.95  Aligned_cols=197  Identities=22%  Similarity=0.333  Sum_probs=173.4

Q ss_pred             ceeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeC--CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707          114 GLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKN--LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK  189 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd  189 (347)
                      .+++++.--+-+|.+-.+  ..+++++|++|..|+||+.  .+.+..|..|..-|.+|+.+|...+++|++.|-+|++||
T Consensus        46 tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~  125 (794)
T KOG0276|consen   46 TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWD  125 (794)
T ss_pred             eeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEee
Confidence            356666666666766554  4569999999999999984  467889999999999999999999999999999999999


Q ss_pred             cCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCE
Q 043707          190 VSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCK  268 (347)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~vwdl~~~~  268 (347)
                      .+.+-..                               ...+.+|...|.+++|+| |.+.+++++-|++|+||.+.+..
T Consensus       126 we~~wa~-------------------------------~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~  174 (794)
T KOG0276|consen  126 WENEWAC-------------------------------EQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH  174 (794)
T ss_pred             ccCceee-------------------------------eeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC
Confidence            9876321                               122336999999999999 67899999999999999999999


Q ss_pred             EEEEEecCCCcEEEEEeCCCC---EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707          269 CLESINAHDDAINSVVAGFDS---LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       269 ~~~~~~~h~~~v~~i~~~~~~---~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                      +..++++|+..|+|+.+-+.+   +|++|+.|.+|+|||.++.      .+++++.+|...|..+.|+|.-..+++||+|
T Consensus       175 ~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk------~CV~TLeGHt~Nvs~v~fhp~lpiiisgsED  248 (794)
T KOG0276|consen  175 PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK------SCVQTLEGHTNNVSFVFFHPELPIIISGSED  248 (794)
T ss_pred             CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH------HHHHHhhcccccceEEEecCCCcEEEEecCC
Confidence            999999999999999998876   9999999999999999843      3899999999999999999999999999999


Q ss_pred             CC
Q 043707          346 GL  347 (347)
Q Consensus       346 G~  347 (347)
                      ||
T Consensus       249 GT  250 (794)
T KOG0276|consen  249 GT  250 (794)
T ss_pred             cc
Confidence            96

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=3e-26  Score=209.45  Aligned_cols=197  Identities=21%  Similarity=0.385  Sum_probs=166.2

Q ss_pred             cceeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCC--cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707          113 NGLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW  188 (347)
Q Consensus       113 ~~~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw  188 (347)
                      ...|....+|-..+.++++  +|.+++||++||+|+|||...  ++.+|..|+..|+.++|+..++.+++.+.||+||.|
T Consensus       340 EsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAw  419 (893)
T KOG0291|consen  340 ESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAW  419 (893)
T ss_pred             cceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEee
Confidence            3456677789999999885  577999999999999999776  788999999999999999999999999999999999


Q ss_pred             ecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCC-cEEEEeCCCC
Q 043707          189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDK-TLKVWRISDC  267 (347)
Q Consensus       189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg-~i~vwdl~~~  267 (347)
                      |+...+.-.....                               ...-...|++..|.|.++..|+.|. .|.||++.+|
T Consensus       420 DlkRYrNfRTft~-------------------------------P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG  468 (893)
T KOG0291|consen  420 DLKRYRNFRTFTS-------------------------------PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG  468 (893)
T ss_pred             eecccceeeeecC-------------------------------CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC
Confidence            9976642211111                               1334567999999999999999875 4999999999


Q ss_pred             EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          268 KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       268 ~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      +.+..+.+|+++|.++.|+|++ .|++++.|.+|++||+-....      ...-..+...|++++|.|+|+.|+++..||
T Consensus       469 qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~------~vEtl~i~sdvl~vsfrPdG~elaVaTldg  542 (893)
T KOG0291|consen  469 QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG------TVETLEIRSDVLAVSFRPDGKELAVATLDG  542 (893)
T ss_pred             eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCc------eeeeEeeccceeEEEEcCCCCeEEEEEecc
Confidence            9999999999999999999998 999999999999999974322      111223566899999999999999999987

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=3.9e-26  Score=212.90  Aligned_cols=209  Identities=25%  Similarity=0.490  Sum_probs=173.8

Q ss_pred             CCCCCCccccccc-------------c--eeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeC---CCcceeeecC
Q 043707          101 PYSPNENLLSSCN-------------G--LIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKN---LKEFSGFKSN  160 (347)
Q Consensus       101 ~~~p~~~~~~~~~-------------~--~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~---~~~~~~~~~h  160 (347)
                      .|+++|..++...             .  +...+.+|...|.++.|  +++++++|+.|++|+|||.   ...++.+.+|
T Consensus       166 ~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH  245 (456)
T KOG0266|consen  166 DFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGH  245 (456)
T ss_pred             EEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCC
Confidence            5677777654431             1  45666789999988886  5789999999999999997   2457889999


Q ss_pred             CCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeE
Q 043707          161 SGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSC  240 (347)
Q Consensus       161 ~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  240 (347)
                      ...|++++|+|+++.+++|+.|++|||||+++++.....                                .+|.+.|++
T Consensus       246 ~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l--------------------------------~~hs~~is~  293 (456)
T KOG0266|consen  246 STYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKL--------------------------------KGHSDGISG  293 (456)
T ss_pred             CCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEee--------------------------------eccCCceEE
Confidence            999999999999999999999999999999986533222                                259999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCE--EEEEEecCCCc--EEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceee
Q 043707          241 LSLNAEQGLLYSGSWDKTLKVWRISDCK--CLESINAHDDA--INSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHF  315 (347)
Q Consensus       241 l~~~~~~~~l~s~s~dg~i~vwdl~~~~--~~~~~~~h~~~--v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~  315 (347)
                      ++|++++++|++++.|+.|+|||+.+++  ++..+..+...  ++++.|+|++ +++++..|+.+++||+....      
T Consensus       294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~------  367 (456)
T KOG0266|consen  294 LAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK------  367 (456)
T ss_pred             EEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCc------
Confidence            9999999999999999999999999999  67788777665  9999999998 99999999999999998443      


Q ss_pred             ehhhhhccCC---cEEEEEEccCCCEEEEecCCCC
Q 043707          316 LAQVLLKQEN---AITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       316 ~~~~~~~h~~---~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      .......|..   .+.+...++.+.++++|+.|+.
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~  402 (456)
T KOG0266|consen  368 SVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGS  402 (456)
T ss_pred             ceeeecccCCcceeEecccccCCCCeEEEEeCCce
Confidence            4555566654   4555566789999999999973

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.9e-26  Score=183.30  Aligned_cols=194  Identities=18%  Similarity=0.373  Sum_probs=168.7

Q ss_pred             cceeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707          113 NGLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW  188 (347)
Q Consensus       113 ~~~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw  188 (347)
                      .+....|..|+++|.++.++  |+|.++++.|.+|++|+..  ..++++.+|...|.+++.+.|...|++|+.|..|.+|
T Consensus         7 tkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw   86 (307)
T KOG0316|consen    7 TKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW   86 (307)
T ss_pred             chhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence            33467888999999999985  8899999999999999955  5588999999999999999999999999999999999


Q ss_pred             ecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC--
Q 043707          189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD--  266 (347)
Q Consensus       189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~--  266 (347)
                      |+.+++.....+                                +|...|+.+.|+.+...+++|+.|.++++||.+.  
T Consensus        87 DV~TGkv~Rr~r--------------------------------gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s  134 (307)
T KOG0316|consen   87 DVNTGKVDRRFR--------------------------------GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS  134 (307)
T ss_pred             EcccCeeeeecc--------------------------------cccceeeEEEecCcceEEEeccccceeEEEEcccCC
Confidence            999997544333                                6999999999999999999999999999999975  


Q ss_pred             CEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          267 CKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       267 ~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      .++++.+....+.|.+|... +..|++|+.||+++.||++.+.      +.....  ..+|++++|+++++++++++-|+
T Consensus       135 ~ePiQildea~D~V~Si~v~-~heIvaGS~DGtvRtydiR~G~------l~sDy~--g~pit~vs~s~d~nc~La~~l~s  205 (307)
T KOG0316|consen  135 FEPIQILDEAKDGVSSIDVA-EHEIVAGSVDGTVRTYDIRKGT------LSSDYF--GHPITSVSFSKDGNCSLASSLDS  205 (307)
T ss_pred             CCccchhhhhcCceeEEEec-ccEEEeeccCCcEEEEEeecce------eehhhc--CCcceeEEecCCCCEEEEeeccc
Confidence            47888888888899999875 5689999999999999999553      233333  44999999999999999999887


Q ss_pred             C
Q 043707          347 L  347 (347)
Q Consensus       347 ~  347 (347)
                      +
T Consensus       206 t  206 (307)
T KOG0316|consen  206 T  206 (307)
T ss_pred             e
Confidence            4

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.1e-25  Score=183.52  Aligned_cols=198  Identities=22%  Similarity=0.366  Sum_probs=162.8

Q ss_pred             eccccEEEEee--cCCEEEEecCCCcEEEEeCC----CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 043707          121 RKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL----KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKN  194 (347)
Q Consensus       121 ~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~----~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~  194 (347)
                      +|+..|..+++  .|++|++|+-|.++.||...    +++..+.+|...|.|++|+++|++||+|+.|+.|-||.+....
T Consensus        59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd  138 (312)
T KOG0645|consen   59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD  138 (312)
T ss_pred             cchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC
Confidence            58888988887  68999999999999999744    6688899999999999999999999999999999999998554


Q ss_pred             CceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC---CCEEEE
Q 043707          195 PSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS---DCKCLE  271 (347)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~---~~~~~~  271 (347)
                      .....                             ..+..|...|..+.|+|...+|++++.|.+|++|+-.   +..+++
T Consensus       139 Efec~-----------------------------aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~  189 (312)
T KOG0645|consen  139 EFECI-----------------------------AVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQ  189 (312)
T ss_pred             cEEEE-----------------------------eeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEE
Confidence            21111                             1122599999999999999999999999999999865   457999


Q ss_pred             EEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCc-----------------------------c-------ce-
Q 043707          272 SINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGK-----------------------------G-------TK-  313 (347)
Q Consensus       272 ~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~-----------------------------~-------~~-  313 (347)
                      ++.+|...|.+++|++.| .|++++.|++|+||.....-.                             .       .. 
T Consensus       190 tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~  269 (312)
T KOG0645|consen  190 TLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSW  269 (312)
T ss_pred             EecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchH
Confidence            999999999999999988 999999999999998431100                             0       00 


Q ss_pred             eeehhhhhccCCcEEEEEEccC-CCEEEEecCCCC
Q 043707          314 HFLAQVLLKQENAITALAVNQE-SAVVYCGSSDGL  347 (347)
Q Consensus       314 ~~~~~~~~~h~~~V~~l~~~p~-~~~l~sgs~DG~  347 (347)
                      ..+...-..|...|++|+|+|. ..+|++|+.||+
T Consensus       270 ~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~  304 (312)
T KOG0645|consen  270 NLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGI  304 (312)
T ss_pred             HHHHhhhcccccccceEEEcCCCCCceeecCCCce
Confidence            0011233468889999999995 689999999995

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=1.6e-25  Score=208.44  Aligned_cols=192  Identities=20%  Similarity=0.296  Sum_probs=153.7

Q ss_pred             eeeeccccEEEEeec---CCEEEEecCCCcEEEEeCCC---------cceeeecCCCCeeEEEEeCCC-CEEEEEeCCCc
Q 043707          118 SIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLK---------EFSGFKSNSGLVKAIIITGDS-NKIFTGHQDGK  184 (347)
Q Consensus       118 ~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~~---------~~~~~~~h~~~V~~l~~sp~~-~~l~s~~~Dg~  184 (347)
                      .+.+|.+.|++++|+   +++|++|+.|++|++||+..         .+..+.+|...|.+++|+|++ ++|++|+.|++
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            467899999999975   56999999999999999642         355788999999999999975 69999999999


Q ss_pred             EEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 043707          185 IRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI  264 (347)
Q Consensus       185 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl  264 (347)
                      |+|||+++++....                                ...|...|.+++|+|++.+|++++.|++|+|||+
T Consensus       150 VrIWDl~tg~~~~~--------------------------------l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~  197 (493)
T PTZ00421        150 VNVWDVERGKAVEV--------------------------------IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDP  197 (493)
T ss_pred             EEEEECCCCeEEEE--------------------------------EcCCCCceEEEEEECCCCEEEEecCCCEEEEEEC
Confidence            99999987642211                                1148899999999999999999999999999999


Q ss_pred             CCCEEEEEEecCCCc-EEEEEeCCCC-EEEEEe----CCCcEEEEEcccCCccceeeehhhhhcc-CCcEEEEEEccCCC
Q 043707          265 SDCKCLESINAHDDA-INSVVAGFDS-LVFTGS----ADGTVKVWRRELQGKGTKHFLAQVLLKQ-ENAITALAVNQESA  337 (347)
Q Consensus       265 ~~~~~~~~~~~h~~~-v~~i~~~~~~-~l~s~~----~dg~I~vwd~~~~~~~~~~~~~~~~~~h-~~~V~~l~~~p~~~  337 (347)
                      ++++.+..+.+|.+. +..+.|.+++ .+++++    .|+.|++||++....     +......+ ...+....|++++.
T Consensus       198 rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~-----p~~~~~~d~~~~~~~~~~d~d~~  272 (493)
T PTZ00421        198 RDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS-----PYSTVDLDQSSALFIPFFDEDTN  272 (493)
T ss_pred             CCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC-----ceeEeccCCCCceEEEEEcCCCC
Confidence            999999999999765 3466788775 665543    489999999985443     22222222 34566778999999


Q ss_pred             EEEEecC-CC
Q 043707          338 VVYCGSS-DG  346 (347)
Q Consensus       338 ~l~sgs~-DG  346 (347)
                      +|++|+. ||
T Consensus       273 ~L~lggkgDg  282 (493)
T PTZ00421        273 LLYIGSKGEG  282 (493)
T ss_pred             EEEEEEeCCC
Confidence            9998874 76

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.95  E-value=5.4e-25  Score=193.96  Aligned_cols=151  Identities=18%  Similarity=0.298  Sum_probs=112.4

Q ss_pred             eeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEe--CCCcceeee---cCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 043707          115 LIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWK--NLKEFSGFK---SNSGLVKAIIITGDSNKIFTGHQDGKIRI  187 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd--~~~~~~~~~---~h~~~V~~l~~sp~~~~l~s~~~Dg~I~v  187 (347)
                      .-.+++.|..-|.|+.+  +|+++++.+.||+|.+||  ..+.+..+.   +|++.|.+|.|+||+++|+|++.|.+++|
T Consensus       182 Fk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KI  261 (603)
T KOG0318|consen  182 FKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKI  261 (603)
T ss_pred             eeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEE
Confidence            44566778889999885  688999999999999999  444455555   89999999999999999999999999999


Q ss_pred             EecCCCCCceeeeecccccccceEEeccCCCeEEEE-----------eecc-eeeeeecCCCeeEEEEcCCCCEEEEEeC
Q 043707          188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEV-----------RRNR-NVLKIRHYDAVSCLSLNAEQGLLYSGSW  255 (347)
Q Consensus       188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~  255 (347)
                      ||+.+.+.......... .....+.+.+....++.+           .... .....+|...|+++..++++.+|++|+.
T Consensus       262 WdVs~~slv~t~~~~~~-v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgsy  340 (603)
T KOG0318|consen  262 WDVSTNSLVSTWPMGST-VEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSY  340 (603)
T ss_pred             EEeeccceEEEeecCCc-hhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeecc
Confidence            99999876544433322 111222222222222222           2222 2334589999999999999999999999


Q ss_pred             CCcEEEEeCCC
Q 043707          256 DKTLKVWRISD  266 (347)
Q Consensus       256 dg~i~vwdl~~  266 (347)
                      ||.|.-||..+
T Consensus       341 DG~I~~W~~~~  351 (603)
T KOG0318|consen  341 DGHINSWDSGS  351 (603)
T ss_pred             CceEEEEecCC
Confidence            99999998754

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=3.8e-26  Score=208.38  Aligned_cols=202  Identities=22%  Similarity=0.334  Sum_probs=170.4

Q ss_pred             EeeeeccccEEEEe-e-cCCEEEEecCCCcEEEEeCCC------cceeeecCCCCeeEEEEeCC-CCEEEEEeCCCcEEE
Q 043707          117 GSIVRKEGHIYSLA-A-SGDLLYTGSDSKNIRVWKNLK------EFSGFKSNSGLVKAIIITGD-SNKIFTGHQDGKIRI  187 (347)
Q Consensus       117 ~~l~~h~~~V~~l~-~-~~~~l~tg~~dg~I~vwd~~~------~~~~~~~h~~~V~~l~~sp~-~~~l~s~~~Dg~I~v  187 (347)
                      ..+.+|+..|.+++ + +|.+|+||+.|.++++|...+      ++....+|...|.+++++.. ...|++++.|++|++
T Consensus       359 ~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~  438 (775)
T KOG0319|consen  359 QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKL  438 (775)
T ss_pred             EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEE
Confidence            36789999999999 3 577999999999999997532      24566789999999999763 458999999999999


Q ss_pred             EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 043707          188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC  267 (347)
Q Consensus       188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~  267 (347)
                      |++...+........                       ..+.....|...|+|++.+|+..++++|+.|++.+||++++.
T Consensus       439 W~l~~s~~~~~~~~~-----------------------~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~  495 (775)
T KOG0319|consen  439 WDLPKSKETAFPIVL-----------------------TCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL  495 (775)
T ss_pred             ecCCCccccccccee-----------------------hhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc
Confidence            999873221110000                       001112249999999999999999999999999999999999


Q ss_pred             EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          268 KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       268 ~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      +.+..+.+|...|.++.|++.. .++|++.|++|+||.+.+.      .+.+++.+|...|..+.|-.++..|++|++||
T Consensus       496 ~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f------SClkT~eGH~~aVlra~F~~~~~qliS~~adG  569 (775)
T KOG0319|consen  496 RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF------SCLKTFEGHTSAVLRASFIRNGKQLISAGADG  569 (775)
T ss_pred             eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc------eeeeeecCccceeEeeeeeeCCcEEEeccCCC
Confidence            9999999999999999999965 9999999999999999843      48999999999999999999999999999999


Q ss_pred             C
Q 043707          347 L  347 (347)
Q Consensus       347 ~  347 (347)
                      .
T Consensus       570 l  570 (775)
T KOG0319|consen  570 L  570 (775)
T ss_pred             c
Confidence            4

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=8.1e-26  Score=196.06  Aligned_cols=201  Identities=20%  Similarity=0.311  Sum_probs=162.4

Q ss_pred             eEeeeeccccEEEEeecC---CEEEEecCCCcEEEEeCC---------CcceeeecCCCCeeEEEEeC-CCCEEEEEeCC
Q 043707          116 IGSIVRKEGHIYSLAASG---DLLYTGSDSKNIRVWKNL---------KEFSGFKSNSGLVKAIIITG-DSNKIFTGHQD  182 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~~~---~~l~tg~~dg~I~vwd~~---------~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~D  182 (347)
                      -..|.+|+++-+.+.|+.   ..|++|+.|++|++||+.         .....+.+|...|..++|++ +...|++++.|
T Consensus       170 dl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd  249 (422)
T KOG0264|consen  170 DLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDD  249 (422)
T ss_pred             ceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCC
Confidence            447789999888899873   489999999999999943         22456889999999999999 67789999999


Q ss_pred             CcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC-CCCEEEEEeCCCcEEE
Q 043707          183 GKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKV  261 (347)
Q Consensus       183 g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~v  261 (347)
                      +.+.|||+++........+                              .+|...|.|++|+| ++.+||+|+.|++|.+
T Consensus       250 ~~L~iwD~R~~~~~~~~~~------------------------------~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~L  299 (422)
T KOG0264|consen  250 GKLMIWDTRSNTSKPSHSV------------------------------KAHSAEVNCVAFNPFNEFILATGSADKTVAL  299 (422)
T ss_pred             CeEEEEEcCCCCCCCcccc------------------------------cccCCceeEEEeCCCCCceEEeccCCCcEEE
Confidence            9999999996321111111                              15999999999999 5778999999999999


Q ss_pred             EeCCCC-EEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCcc--------ceeeehhhhhccCCcEEEE
Q 043707          262 WRISDC-KCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKG--------TKHFLAQVLLKQENAITAL  330 (347)
Q Consensus       262 wdl~~~-~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~--------~~~~~~~~~~~h~~~V~~l  330 (347)
                      ||+|+. +++.++.+|...|.+|.|+|..  .||+++.|+.+.|||+..-+..        ....++..-.+|...|.++
T Consensus       300 wDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~Df  379 (422)
T KOG0264|consen  300 WDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDF  379 (422)
T ss_pred             eechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccc
Confidence            999986 4789999999999999999975  9999999999999999754331        1122334556788899999


Q ss_pred             EEccCCC-EEEEecCCC
Q 043707          331 AVNQESA-VVYCGSSDG  346 (347)
Q Consensus       331 ~~~p~~~-~l~sgs~DG  346 (347)
                      .|+|+.. .|++.+.|+
T Consensus       380 sWnp~ePW~I~SvaeDN  396 (422)
T KOG0264|consen  380 SWNPNEPWTIASVAEDN  396 (422)
T ss_pred             cCCCCCCeEEEEecCCc
Confidence            9999884 566677665

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.2e-25  Score=201.70  Aligned_cols=196  Identities=21%  Similarity=0.396  Sum_probs=171.5

Q ss_pred             ceeEeeeeccccEEEEeecCC--EEEEecCCCcEEEEeCCC---cceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEE
Q 043707          114 GLIGSIVRKEGHIYSLAASGD--LLYTGSDSKNIRVWKNLK---EFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRI  187 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~~~~--~l~tg~~dg~I~vwd~~~---~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~v  187 (347)
                      ..++.+.+|.+.|.|+...+.  +++|+++|-+|++||..+   +.+.|.+|..-|.+++|.| |.+.|++|+.|++|+|
T Consensus        88 ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKV  167 (794)
T KOG0276|consen   88 EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKV  167 (794)
T ss_pred             eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEE
Confidence            478999999999999986654  999999999999999764   4678999999999999999 7889999999999999


Q ss_pred             EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC--CCCEEEEEeCCCcEEEEeCC
Q 043707          188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA--EQGLLYSGSWDKTLKVWRIS  265 (347)
Q Consensus       188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~dg~i~vwdl~  265 (347)
                      |.+....+....                                .+|...|+|+.+-+  |..+|++|++|.+|+|||..
T Consensus       168 Wslgs~~~nfTl--------------------------------~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQ  215 (794)
T KOG0276|consen  168 WSLGSPHPNFTL--------------------------------EGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQ  215 (794)
T ss_pred             EEcCCCCCceee--------------------------------eccccCcceEEeccCCCcceEEecCCCceEEEeecc
Confidence            999876543332                                26999999999987  45699999999999999999


Q ss_pred             CCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707          266 DCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       266 ~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      +..|++++.+|...|..+.|+|.- ++++|++||+|+||+..+-      .+..++.-....|++|+-.+.++.++.|.+
T Consensus       216 tk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty------~lE~tLn~gleRvW~I~~~k~~~~i~vG~D  289 (794)
T KOG0276|consen  216 TKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY------KLEKTLNYGLERVWCIAAHKGDGKIAVGFD  289 (794)
T ss_pred             hHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcce------ehhhhhhcCCceEEEEeecCCCCeEEEecc
Confidence            999999999999999999999985 9999999999999998632      256666667789999999998898999887


Q ss_pred             CCC
Q 043707          345 DGL  347 (347)
Q Consensus       345 DG~  347 (347)
                      .|.
T Consensus       290 eg~  292 (794)
T KOG0276|consen  290 EGS  292 (794)
T ss_pred             CCc
Confidence            763

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=1.7e-24  Score=202.85  Aligned_cols=195  Identities=16%  Similarity=0.210  Sum_probs=151.3

Q ss_pred             eeEeeeeccccEEEEeec---CCEEEEecCCCcEEEEeCCC----------cceeeecCCCCeeEEEEeCCCCE-EEEEe
Q 043707          115 LIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLK----------EFSGFKSNSGLVKAIIITGDSNK-IFTGH  180 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~~----------~~~~~~~h~~~V~~l~~sp~~~~-l~s~~  180 (347)
                      .+..+.+|.+.|.+++|+   +++|++|+.||+|+|||+..          ....+.+|...|.+++|+|++.. |++++
T Consensus        66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS  145 (568)
T PTZ00420         66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG  145 (568)
T ss_pred             eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence            567889999999999986   46999999999999999643          12357789999999999998765 57999


Q ss_pred             CCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 043707          181 QDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLK  260 (347)
Q Consensus       181 ~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~  260 (347)
                      .|++|+|||+++++.....                                 .|...|.+++|+++|.+|++++.|+.|+
T Consensus       146 ~DgtIrIWDl~tg~~~~~i---------------------------------~~~~~V~SlswspdG~lLat~s~D~~Ir  192 (568)
T PTZ00420        146 FDSFVNIWDIENEKRAFQI---------------------------------NMPKKLSSLKWNIKGNLLSGTCVGKHMH  192 (568)
T ss_pred             CCCeEEEEECCCCcEEEEE---------------------------------ecCCcEEEEEECCCCCEEEEEecCCEEE
Confidence            9999999999877532111                                 2557899999999999999999999999


Q ss_pred             EEeCCCCEEEEEEecCCCcEEEE-----EeCCCC-EEEEEeCCC----cEEEEEcccCCccceeeehhh--hhccCCcEE
Q 043707          261 VWRISDCKCLESINAHDDAINSV-----VAGFDS-LVFTGSADG----TVKVWRRELQGKGTKHFLAQV--LLKQENAIT  328 (347)
Q Consensus       261 vwdl~~~~~~~~~~~h~~~v~~i-----~~~~~~-~l~s~~~dg----~I~vwd~~~~~~~~~~~~~~~--~~~h~~~V~  328 (347)
                      |||+++++.+.++.+|.+.+.+.     .|++++ +|++++.|+    +|+|||++....     ++..  +..+.+.+.
T Consensus       193 IwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~-----pl~~~~ld~~~~~L~  267 (568)
T PTZ00420        193 IIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS-----ALVTMSIDNASAPLI  267 (568)
T ss_pred             EEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC-----ceEEEEecCCccceE
Confidence            99999999999999998765433     234664 888877664    799999985443     2222  222333444


Q ss_pred             EEEEccCCCEEEEecCCCC
Q 043707          329 ALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       329 ~l~~~p~~~~l~sgs~DG~  347 (347)
                      .....+++.++++|+.|++
T Consensus       268 p~~D~~tg~l~lsGkGD~t  286 (568)
T PTZ00420        268 PHYDESTGLIYLIGKGDGN  286 (568)
T ss_pred             EeeeCCCCCEEEEEECCCe
Confidence            4444556889999988874

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.94  E-value=3.5e-25  Score=188.05  Aligned_cols=191  Identities=18%  Similarity=0.330  Sum_probs=163.7

Q ss_pred             EeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC---------------------------CcceeeecCCCCeeEE
Q 043707          117 GSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL---------------------------KEFSGFKSNSGLVKAI  167 (347)
Q Consensus       117 ~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~---------------------------~~~~~~~~h~~~V~~l  167 (347)
                      ..-.+|++.|-+++.  +|..+++|+.|..|.||+..                           ..+..+.+|+++|.++
T Consensus       187 ~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V  266 (423)
T KOG0313|consen  187 KVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSV  266 (423)
T ss_pred             hHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeE
Confidence            334489999999884  68899999999999999710                           1244578999999999


Q ss_pred             EEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCC
Q 043707          168 IITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ  247 (347)
Q Consensus       168 ~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~  247 (347)
                      .|++ ...+++++.|.+|+.||+.++.......                                 ....+.|++.+|..
T Consensus       267 ~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~---------------------------------~~ksl~~i~~~~~~  312 (423)
T KOG0313|consen  267 VWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT---------------------------------TNKSLNCISYSPLS  312 (423)
T ss_pred             EEcC-CCceEeecccceEEEEEeecccceeeee---------------------------------cCcceeEeeccccc
Confidence            9998 5599999999999999999986543332                                 55778999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCE---EEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhc
Q 043707          248 GLLYSGSWDKTLKVWRISDCK---CLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLK  322 (347)
Q Consensus       248 ~~l~s~s~dg~i~vwdl~~~~---~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~  322 (347)
                      ++|++|+.|..|++||.|++.   ...+|.+|.+.|.++.|+|..  +|++|+.|+++++||++....     ++..+.+
T Consensus       313 ~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~-----plydI~~  387 (423)
T KOG0313|consen  313 KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA-----PLYDIAG  387 (423)
T ss_pred             ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCC-----cceeecc
Confidence            999999999999999998763   467889999999999999986  899999999999999996543     7888999


Q ss_pred             cCCcEEEEEEccCCCEEEEecCCCC
Q 043707          323 QENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       323 h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      |...|.++.|. ++..|++||.|.+
T Consensus       388 h~DKvl~vdW~-~~~~IvSGGaD~~  411 (423)
T KOG0313|consen  388 HNDKVLSVDWN-EGGLIVSGGADNK  411 (423)
T ss_pred             CCceEEEEecc-CCceEEeccCcce
Confidence            99999999998 5689999999863

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=2.8e-25  Score=179.52  Aligned_cols=187  Identities=20%  Similarity=0.244  Sum_probs=158.2

Q ss_pred             cccEEEEeec---CCEEEEecCCCcEEEEeCC---CcceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCC
Q 043707          123 EGHIYSLAAS---GDLLYTGSDSKNIRVWKNL---KEFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNP  195 (347)
Q Consensus       123 ~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~---~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~  195 (347)
                      ++.++.++|+   .+.+++++.||+++|||..   .++..++.|...|.++.|++ ..+.+++++-|++|++|+..-++.
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S  139 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS  139 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence            3457777775   4589999999999999954   56888999999999999999 677899999999999999876653


Q ss_pred             ceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCEEEEEEe
Q 043707          196 SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESIN  274 (347)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~vwdl~~~~~~~~~~  274 (347)
                      ...                                ..+|...|....|+| ..+++++++.|+++++||++.......+.
T Consensus       140 v~T--------------------------------f~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~  187 (311)
T KOG0277|consen  140 VQT--------------------------------FNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE  187 (311)
T ss_pred             eEe--------------------------------ecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE
Confidence            222                                226999999999999 48899999999999999998765545599


Q ss_pred             cCCCcEEEEEeCCC--CEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCC-CEEEEecCCC
Q 043707          275 AHDDAINSVVAGFD--SLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQES-AVVYCGSSDG  346 (347)
Q Consensus       275 ~h~~~v~~i~~~~~--~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~-~~l~sgs~DG  346 (347)
                      +|...|.++.|+.-  .+|+||+.|+.|++||++...     .++..+.+|.-+|..|+|+|.. ..|++++.|=
T Consensus       188 ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r-----~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDm  257 (311)
T KOG0277|consen  188 AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR-----TPLFELNGHGLAVRKVKFSPHHASLLASASYDM  257 (311)
T ss_pred             eccceeEeecccccCCcEEEecCCCceEEEEehhhcc-----ccceeecCCceEEEEEecCcchhhHhhhccccc
Confidence            99999999999864  399999999999999999654     3788889999999999999975 7888888873

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.93  E-value=5.8e-24  Score=187.49  Aligned_cols=230  Identities=19%  Similarity=0.279  Sum_probs=168.9

Q ss_pred             eeeeccccE--EEEeecCCEEEEecCCCcEEEEeCCCc----ceeeecCCCCeeEEEEeCCCCEEEEEeCC----CcEEE
Q 043707          118 SIVRKEGHI--YSLAASGDLLYTGSDSKNIRVWKNLKE----FSGFKSNSGLVKAIIITGDSNKIFTGHQD----GKIRI  187 (347)
Q Consensus       118 ~l~~h~~~V--~~l~~~~~~l~tg~~dg~I~vwd~~~~----~~~~~~h~~~V~~l~~sp~~~~l~s~~~D----g~I~v  187 (347)
                      ...+|...+  -.++|+|.++|+|...|+|||||..+.    ...++.-.++|.+|+|++++++|+..++.    |.+.+
T Consensus        54 iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~  133 (603)
T KOG0318|consen   54 IYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFL  133 (603)
T ss_pred             eeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEE
Confidence            344554443  445578899999999999999996542    33566778999999999999998887743    45677


Q ss_pred             EecCCCCCc-----eeeeecccccccceEEeccCCCeEEEEeeccee----eeeecCCCeeEEEEcCCCCEEEEEeCCCc
Q 043707          188 WKVSRKNPS-----VHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNV----LKIRHYDAVSCLSLNAEQGLLYSGSWDKT  258 (347)
Q Consensus       188 wd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~h~~~V~~l~~~~~~~~l~s~s~dg~  258 (347)
                      ||--+..-.     ....-..+...+-+-.......+.+.+..+...    ....|..-|.|+.|+|||.++++.+.||+
T Consensus       134 ~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk  213 (603)
T KOG0318|consen  134 WDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK  213 (603)
T ss_pred             ecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCcc
Confidence            876543110     111111111222222222233333444333322    22358889999999999999999999999


Q ss_pred             EEEEeCCCCEEEEEEe---cCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCc------------------------
Q 043707          259 LKVWRISDCKCLESIN---AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGK------------------------  310 (347)
Q Consensus       259 i~vwdl~~~~~~~~~~---~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~------------------------  310 (347)
                      +.+||=.+++.+..+.   +|++.|.+|.|+||+ .|++++.|.+++|||+.+...                        
T Consensus       214 i~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~l  293 (603)
T KOG0318|consen  214 IYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHL  293 (603)
T ss_pred             EEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeE
Confidence            9999999999999997   999999999999998 999999999999999975422                        


Q ss_pred             -------------cceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          311 -------------GTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       311 -------------~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                                   .....+++.+.+|...|+++..+|++.+|++|+.||.
T Consensus       294 ItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~  343 (603)
T KOG0318|consen  294 ITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGH  343 (603)
T ss_pred             EEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCce
Confidence                         0111245677899999999999999999999999984

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=7.5e-25  Score=177.69  Aligned_cols=224  Identities=17%  Similarity=0.237  Sum_probs=180.1

Q ss_pred             EeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCCc----ceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEe
Q 043707          117 GSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKE----FSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWK  189 (347)
Q Consensus       117 ~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~~----~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd  189 (347)
                      +.+.+|.++|.+++|  +|..|++|+.|+++++|++...    -....+|.+.|..++|+| +...|++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            456678889999987  4889999999999999986543    234678999999999998 677999999999999999


Q ss_pred             cCCCCCceeeeec-------ccccccceEEecc-CCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 043707          190 VSRKNPSVHKRVG-------SLPTFKDYVKSSV-NPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKV  261 (347)
Q Consensus       190 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~v  261 (347)
                      ++.+++.......       ..|....+..... +...+++.+..+..........+..++|+.++.+++....-|+|.|
T Consensus        94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~I  173 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEI  173 (313)
T ss_pred             eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEE
Confidence            9998865443221       2233333332222 2223445555555555566777889999988888887777899999


Q ss_pred             EeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEE
Q 043707          262 WRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVY  340 (347)
Q Consensus       262 wdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~  340 (347)
                      ......+++.++++|.....||.|+|+| +||+|+.|-.+.+||++      ...+++.+..+.-+|..|.|+.+|++||
T Consensus       174 LsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~------ELiC~R~isRldwpVRTlSFS~dg~~lA  247 (313)
T KOG1407|consen  174 LSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVD------ELICERCISRLDWPVRTLSFSHDGRMLA  247 (313)
T ss_pred             EeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChh------HhhhheeeccccCceEEEEeccCcceee
Confidence            9999999999999999999999999999 99999999999999997      2346778888999999999999999999


Q ss_pred             EecCCC
Q 043707          341 CGSSDG  346 (347)
Q Consensus       341 sgs~DG  346 (347)
                      +||+|-
T Consensus       248 SaSEDh  253 (313)
T KOG1407|consen  248 SASEDH  253 (313)
T ss_pred             ccCccc
Confidence            999984

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=5.2e-25  Score=192.54  Aligned_cols=193  Identities=21%  Similarity=0.403  Sum_probs=161.2

Q ss_pred             eeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCC--cceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEe
Q 043707          115 LIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWK  189 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~--~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd  189 (347)
                      .++++...+..|+++++  +|++|++|+..|.|+|+|...  .++.+.+|+.+|..+.|+| ++..|++|+.|+.+++||
T Consensus        60 ~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d  139 (487)
T KOG0310|consen   60 VRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWD  139 (487)
T ss_pred             hhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEE
Confidence            34455566777888776  599999999999999999544  4778999999999999999 566788999999999999


Q ss_pred             cCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCC-
Q 043707          190 VSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDC-  267 (347)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwdl~~~-  267 (347)
                      +.+...  ...                              ..+|.+.|.|.+|+|. ++++++|+.||+|++||++.. 
T Consensus       140 ~s~a~v--~~~------------------------------l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~  187 (487)
T KOG0310|consen  140 LSTAYV--QAE------------------------------LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT  187 (487)
T ss_pred             cCCcEE--EEE------------------------------ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC
Confidence            988752  111                              1259999999999995 568999999999999999987 


Q ss_pred             EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          268 KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       268 ~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      ..+.++. |..+|..+.+-|.| .|+++ ....|+|||+-.+++     .+.....|...|||+++..++..|++||-||
T Consensus       188 ~~v~eln-hg~pVe~vl~lpsgs~iasA-gGn~vkVWDl~~G~q-----ll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~  260 (487)
T KOG0310|consen  188 SRVVELN-HGCPVESVLALPSGSLIASA-GGNSVKVWDLTTGGQ-----LLTSMFNHNKTVTCLRLASDSTRLLSGSLDR  260 (487)
T ss_pred             ceeEEec-CCCceeeEEEcCCCCEEEEc-CCCeEEEEEecCCce-----ehhhhhcccceEEEEEeecCCceEeeccccc
Confidence            6667775 99999999999987 55554 567999999986665     5666666999999999999999999999997

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=6.8e-25  Score=188.17  Aligned_cols=241  Identities=18%  Similarity=0.219  Sum_probs=179.3

Q ss_pred             CCCCCCcccccccc----------------eeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCCCc--ceeee-c
Q 043707          101 PYSPNENLLSSCNG----------------LIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE--FSGFK-S  159 (347)
Q Consensus       101 ~~~p~~~~~~~~~~----------------~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~~~--~~~~~-~  159 (347)
                      .|+++|+.+++..+                +.+++.+|..+|..+.|+  .++|++|+.|..+++||....  ...+. +
T Consensus       231 ~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~  310 (519)
T KOG0293|consen  231 QFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG  310 (519)
T ss_pred             EEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccC
Confidence            68899999877542                688999999999888875  569999999999999995532  33322 2


Q ss_pred             CCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeec--------ccccccceEEeccCCCeEEEEe-ecceee
Q 043707          160 NSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVG--------SLPTFKDYVKSSVNPKNYVEVR-RNRNVL  230 (347)
Q Consensus       160 h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  230 (347)
                      |...+.+++|.|||..+++|+.|++|..||++.........+.        -.+....++....+....+.-. .....-
T Consensus       311 ~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~  390 (519)
T KOG0293|consen  311 LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRG  390 (519)
T ss_pred             cCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhc
Confidence            4578999999999999999999999999999876432222111        1112222222222222211111 111111


Q ss_pred             eeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEE--EeC--CCCEEEEEeCCCcEEEEEcc
Q 043707          231 KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV--VAG--FDSLVFTGSADGTVKVWRRE  306 (347)
Q Consensus       231 ~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i--~~~--~~~~l~s~~~dg~I~vwd~~  306 (347)
                      .+.-..+|++++.+.+++++++.-.+..+++||+++.+.+..+.+|...-.-|  +|.  .+.++++|++|+.|+||+..
T Consensus       391 lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~  470 (519)
T KOG0293|consen  391 LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRI  470 (519)
T ss_pred             cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEcc
Confidence            34466789999999999999999999999999999999999999997653333  332  23499999999999999998


Q ss_pred             cCCccceeeehhhhhccCCcEEEEEEccCC-CEEEEecCCCC
Q 043707          307 LQGKGTKHFLAQVLLKQENAITALAVNQES-AVVYCGSSDGL  347 (347)
Q Consensus       307 ~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~-~~l~sgs~DG~  347 (347)
                      .+.      ++..+.+|...|++|+|+|.. .++|+||.|||
T Consensus       471 sgk------ll~~LsGHs~~vNcVswNP~~p~m~ASasDDgt  506 (519)
T KOG0293|consen  471 SGK------LLAVLSGHSKTVNCVSWNPADPEMFASASDDGT  506 (519)
T ss_pred             CCc------eeEeecCCcceeeEEecCCCCHHHhhccCCCCe
Confidence            543      789999999999999999966 88999999996

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.93  E-value=8.8e-25  Score=185.67  Aligned_cols=235  Identities=20%  Similarity=0.324  Sum_probs=179.5

Q ss_pred             CCCCCCcccccccceeEeeeeccccEEEEeec-----CCEEEEecCCCcEEEEeCC------CcceeeecCCCCeeEEEE
Q 043707          101 PYSPNENLLSSCNGLIGSIVRKEGHIYSLAAS-----GDLLYTGSDSKNIRVWKNL------KEFSGFKSNSGLVKAIII  169 (347)
Q Consensus       101 ~~~p~~~~~~~~~~~i~~l~~h~~~V~~l~~~-----~~~l~tg~~dg~I~vwd~~------~~~~~~~~h~~~V~~l~~  169 (347)
                      .|.-...++...++.+..+.+|.++|.++.+-     ...|++++.|.++++|...      +....-++|...|.++..
T Consensus       122 sYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv  201 (423)
T KOG0313|consen  122 SYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSV  201 (423)
T ss_pred             ecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEe
Confidence            45555666666777899999999999987752     3379999999999999743      224445599999999999


Q ss_pred             eCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCE
Q 043707          170 TGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGL  249 (347)
Q Consensus       170 sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~  249 (347)
                      .+++.++++|+.|..|+||+...............+.       ...........+.......+|.++|..+.|++ ...
T Consensus       202 ~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rr-------k~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v  273 (423)
T KOG0313|consen  202 DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRR-------KKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATV  273 (423)
T ss_pred             cCCCCeEEeecccceeeecccCCCccccccccchhhh-------hhhhhhhcccccCceEEecccccceeeEEEcC-CCc
Confidence            9999999999999999999943332111111000000       00000001112223445668999999999998 778


Q ss_pred             EEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEE
Q 043707          250 LYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAIT  328 (347)
Q Consensus       250 l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~  328 (347)
                      ++++++|.+|++||+.+++++.++.+. ..++++..+|.. +|++|+.|..|++||.+.+.   .....+.+.+|...|.
T Consensus       274 ~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~---gs~v~~s~~gH~nwVs  349 (423)
T KOG0313|consen  274 IYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD---GSVVSQSLIGHKNWVS  349 (423)
T ss_pred             eEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCCCceeecCCCCCC---CceeEEeeecchhhhh
Confidence            999999999999999999999888754 568999999976 99999999999999999764   3456788999999999


Q ss_pred             EEEEccCC-CEEEEecCCCC
Q 043707          329 ALAVNQES-AVVYCGSSDGL  347 (347)
Q Consensus       329 ~l~~~p~~-~~l~sgs~DG~  347 (347)
                      ++.|+|.. .+|++|+.||+
T Consensus       350 svkwsp~~~~~~~S~S~D~t  369 (423)
T KOG0313|consen  350 SVKWSPTNEFQLVSGSYDNT  369 (423)
T ss_pred             heecCCCCceEEEEEecCCe
Confidence            99999966 77999999985

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.93  E-value=3.6e-25  Score=202.35  Aligned_cols=234  Identities=22%  Similarity=0.322  Sum_probs=187.1

Q ss_pred             CCCCccccCCCCCCCCCCCCCC---CCCCCCCCCCccccc--c-----------cceeEeeeeccccEEEEe--ecCCEE
Q 043707           75 EASPYLMSPWNNQPVSPYTKSP---WLMPPYSPNENLLSS--C-----------NGLIGSIVRKEGHIYSLA--ASGDLL  136 (347)
Q Consensus        75 ~~s~~~~~~~~~~~~~~~~~~~---~~~~~~~p~~~~~~~--~-----------~~~i~~l~~h~~~V~~l~--~~~~~l  136 (347)
                      ++...+.+.|+.........-+   .+...|-|.+..+..  .           ..++.++++|++.|+.++  ++++.+
T Consensus       390 Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~  469 (888)
T KOG0306|consen  390 SGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGF  469 (888)
T ss_pred             ecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCce
Confidence            3334677888874343322222   122245565554322  1           236778889999999988  678899


Q ss_pred             EEecCCCcEEEEeCC-------Ccce-------eeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeec
Q 043707          137 YTGSDSKNIRVWKNL-------KEFS-------GFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVG  202 (347)
Q Consensus       137 ~tg~~dg~I~vwd~~-------~~~~-------~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~  202 (347)
                      +||+.|.+|++||..       ...+       ..-.-...|.|+.++|||++|+.+-.|.+|+||-+++-+.-      
T Consensus       470 vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFf------  543 (888)
T KOG0306|consen  470 VTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFF------  543 (888)
T ss_pred             EEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeee------
Confidence            999999999999832       1111       11123467999999999999999999999999998876421      


Q ss_pred             ccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEE
Q 043707          203 SLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINS  282 (347)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~  282 (347)
                                                ..+.+|.-+|.||..+||++++++|+.|+.|+||-+.-|.|-++|.+|++.|.+
T Consensus       544 --------------------------lsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~  597 (888)
T KOG0306|consen  544 --------------------------LSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMS  597 (888)
T ss_pred             --------------------------eeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeE
Confidence                                      223479999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          283 VVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       283 i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      +.|.|+. +++++|.|+.|+-||-.      +...++.+.+|...|++++..|+|.+++++|.|.
T Consensus       598 V~F~P~~~~FFt~gKD~kvKqWDg~------kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~  656 (888)
T KOG0306|consen  598 VQFLPKTHLFFTCGKDGKVKQWDGE------KFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDK  656 (888)
T ss_pred             EEEcccceeEEEecCcceEEeechh------hhhhheeeccchheeeeeEEcCCCCeEEeccCCc
Confidence            9999987 88999999999999987      4447899999999999999999999999999985

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=8.9e-25  Score=184.70  Aligned_cols=226  Identities=17%  Similarity=0.232  Sum_probs=183.2

Q ss_pred             eeEeeeeccccEEEEeecCC--EEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEec
Q 043707          115 LIGSIVRKEGHIYSLAASGD--LLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKV  190 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~~~~--~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~  190 (347)
                      +...+.+|...|+.+-+.+.  +++++++|++|++||..  +....+++|...|.+|.|+..|+++++|+.|=.+++||.
T Consensus       100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~  179 (406)
T KOG0295|consen  100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF  179 (406)
T ss_pred             chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence            45666778888988876554  78888899999999954  557889999999999999999999999999999999999


Q ss_pred             CCCC---------CceeeeecccccccceEEeccCCCeE--EEEeecc-eeeeeecCCCeeEEEEcCCCCEEEEEeCCCc
Q 043707          191 SRKN---------PSVHKRVGSLPTFKDYVKSSVNPKNY--VEVRRNR-NVLKIRHYDAVSCLSLNAEQGLLYSGSWDKT  258 (347)
Q Consensus       191 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~  258 (347)
                      .+..         ......+...|.. +++.++.....+  ++..... ...+.+|...|..++.+.||.++++++.|.+
T Consensus       180 ~~~~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqt  258 (406)
T KOG0295|consen  180 DTFFRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQT  258 (406)
T ss_pred             HHHHHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCce
Confidence            7631         1112223334443 444444443333  2333333 2345679999999999999999999999999


Q ss_pred             EEEEeCCCCEEEEEEecCCCcEEEEEeCCC----------C------EEEEEeCCCcEEEEEcccCCccceeeehhhhhc
Q 043707          259 LKVWRISDCKCLESINAHDDAINSVVAGFD----------S------LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLK  322 (347)
Q Consensus       259 i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~----------~------~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~  322 (347)
                      +++|-+.+++|...++.|+.+|.+++|.|.          +      ++++++.|++|++||+.++.      ++.++.+
T Consensus       259 l~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~------cL~tL~g  332 (406)
T KOG0295|consen  259 LRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM------CLFTLVG  332 (406)
T ss_pred             EEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe------EEEEEec
Confidence            999999999999999999999999999762          1      78899999999999998653      7889999


Q ss_pred             cCCcEEEEEEccCCCEEEEecCCCC
Q 043707          323 QENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       323 h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      |..+|..++|+|.|++|+++.+|++
T Consensus       333 hdnwVr~~af~p~Gkyi~ScaDDkt  357 (406)
T KOG0295|consen  333 HDNWVRGVAFSPGGKYILSCADDKT  357 (406)
T ss_pred             ccceeeeeEEcCCCeEEEEEecCCc
Confidence            9999999999999999999999985

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.93  E-value=4.5e-24  Score=195.31  Aligned_cols=195  Identities=22%  Similarity=0.395  Sum_probs=164.6

Q ss_pred             eeEeeeeccccEEEEeec--CCEEEEecCC-CcEEEEeCCCc--ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707          115 LIGSIVRKEGHIYSLAAS--GDLLYTGSDS-KNIRVWKNLKE--FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK  189 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~~--~~~l~tg~~d-g~I~vwd~~~~--~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd  189 (347)
                      +|+.+.--+..|..+.++  |++|+.|+.. |.+.||++..+  +...++|...+.+++++|||++|+||+.||+|+|||
T Consensus       299 lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn  378 (893)
T KOG0291|consen  299 LIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWN  378 (893)
T ss_pred             EEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEe
Confidence            566666566678888887  9999998764 79999996644  556788999999999999999999999999999999


Q ss_pred             cCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEE
Q 043707          190 VSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC  269 (347)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~  269 (347)
                      ...+-+....                                ..|...|+.+.|+..++.|++.+.||+++.||+...++
T Consensus       379 ~~SgfC~vTF--------------------------------teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN  426 (893)
T KOG0291|consen  379 TQSGFCFVTF--------------------------------TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN  426 (893)
T ss_pred             ccCceEEEEe--------------------------------ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce
Confidence            9887432221                                25999999999999999999999999999999999999


Q ss_pred             EEEEecCC-CcEEEEEeCCCC-EEEEEeCCC-cEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          270 LESINAHD-DAINSVVAGFDS-LVFTGSADG-TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       270 ~~~~~~h~-~~v~~i~~~~~~-~l~s~~~dg-~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      .++|.... -...|++..|.| ++.+|+.|. .|.||++++++      ++..+.+|+++|.+++|+|.+..|+++|.|.
T Consensus       427 fRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq------llDiLsGHEgPVs~l~f~~~~~~LaS~SWDk  500 (893)
T KOG0291|consen  427 FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ------LLDILSGHEGPVSGLSFSPDGSLLASGSWDK  500 (893)
T ss_pred             eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe------eeehhcCCCCcceeeEEccccCeEEeccccc
Confidence            99997543 356788888888 555566554 79999998664      7899999999999999999999999999997


Q ss_pred             C
Q 043707          347 L  347 (347)
Q Consensus       347 ~  347 (347)
                      |
T Consensus       501 T  501 (893)
T KOG0291|consen  501 T  501 (893)
T ss_pred             e
Confidence            5

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.93  E-value=6e-24  Score=211.89  Aligned_cols=192  Identities=15%  Similarity=0.251  Sum_probs=158.4

Q ss_pred             cccEEEEeec---CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCc
Q 043707          123 EGHIYSLAAS---GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPS  196 (347)
Q Consensus       123 ~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~  196 (347)
                      ...|.++.|+   +.+|++++.||+|+|||..  +.+..+.+|.+.|++++|+| ++.+|++|+.||+|++||++++...
T Consensus       532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~  611 (793)
T PLN00181        532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI  611 (793)
T ss_pred             cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE
Confidence            3456777764   5799999999999999965  45677889999999999997 7889999999999999999876432


Q ss_pred             eeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEc-CCCCEEEEEeCCCcEEEEeCCCCE-EEEEEe
Q 043707          197 VHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLN-AEQGLLYSGSWDKTLKVWRISDCK-CLESIN  274 (347)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~~~l~s~s~dg~i~vwdl~~~~-~~~~~~  274 (347)
                      ...                                 .+...|.++.|+ +++.+|++|+.||.|++||+++.+ ++..+.
T Consensus       612 ~~~---------------------------------~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~  658 (793)
T PLN00181        612 GTI---------------------------------KTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI  658 (793)
T ss_pred             EEE---------------------------------ecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec
Confidence            111                                 134578999995 468999999999999999998865 577888


Q ss_pred             cCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          275 AHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       275 ~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      +|...|.++.|.+..+|++++.|++|++||++.........++..+.+|...+..++|+|++.+|++|+.||.
T Consensus       659 ~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~  731 (793)
T PLN00181        659 GHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE  731 (793)
T ss_pred             CCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCE
Confidence            9999999999986669999999999999999743221122356677889999999999999999999999984

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.93  E-value=2.2e-23  Score=181.55  Aligned_cols=194  Identities=28%  Similarity=0.473  Sum_probs=164.5

Q ss_pred             eEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecC
Q 043707          116 IGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVS  191 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~  191 (347)
                      +.++.+|.+.|.++.++  +++|++++.||.|++|+..  +....+..|...+..+.|+|++++|++++.||.|++||+.
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~   81 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE   81 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence            45677899999999975  5799999999999999965  3456777898999999999999999999999999999998


Q ss_pred             CCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEE
Q 043707          192 RKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE  271 (347)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~  271 (347)
                      .++.....                                ..|...|.++.|++++.++++++.|+.+++||+++++.+.
T Consensus        82 ~~~~~~~~--------------------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  129 (289)
T cd00200          82 TGECVRTL--------------------------------TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT  129 (289)
T ss_pred             cccceEEE--------------------------------eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE
Confidence            75322211                                1377789999999998899988889999999999999999


Q ss_pred             EEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          272 SINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       272 ~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      .+..|...+.++.|+|++ ++++++.|+.|++||++...      ....+..|...|.+++|+|+++.|++++.||.
T Consensus       130 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~  200 (289)
T cd00200         130 TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK------CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT  200 (289)
T ss_pred             EeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc------cceeEecCccccceEEECCCcCEEEEecCCCc
Confidence            999999999999999977 66666669999999997433      45555678889999999999999999988763

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=6.6e-24  Score=169.90  Aligned_cols=225  Identities=17%  Similarity=0.218  Sum_probs=171.6

Q ss_pred             cceeEeeeeccccEEEEe--ecCCEEEEecCCCcEEEEeC--CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707          113 NGLIGSIVRKEGHIYSLA--ASGDLLYTGSDSKNIRVWKN--LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW  188 (347)
Q Consensus       113 ~~~i~~l~~h~~~V~~l~--~~~~~l~tg~~dg~I~vwd~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw  188 (347)
                      +.++++..+|..+|..++  ++...+++|+.|+.|.+||.  .+..+.|.+|.+.|+.++|+.+...+++|+.|.++|+|
T Consensus        49 g~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~w  128 (307)
T KOG0316|consen   49 GALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLW  128 (307)
T ss_pred             cceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEE
Confidence            346899999999999877  46779999999999999995  46688999999999999999999999999999999999


Q ss_pred             ecCCCCCceeeeecccccc--------cceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 043707          189 KVSRKNPSVHKRVGSLPTF--------KDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLK  260 (347)
Q Consensus       189 d~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~  260 (347)
                      |.++....+...+......        ..++..+.++..-...-+......--...+|+|++|+++++..+.++.|++++
T Consensus       129 DCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlr  208 (307)
T KOG0316|consen  129 DCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLR  208 (307)
T ss_pred             EcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceee
Confidence            9998876544433322111        12233333333222222222222223567899999999999999999999999


Q ss_pred             EEeCCCCEEEEEEecCCCcEEEEEeC--C-CCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCc-EEEEEEccCC
Q 043707          261 VWRISDCKCLESINAHDDAINSVVAG--F-DSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENA-ITALAVNQES  336 (347)
Q Consensus       261 vwdl~~~~~~~~~~~h~~~v~~i~~~--~-~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~-V~~l~~~p~~  336 (347)
                      +.|-.+|+.+..+++|...-..+.+.  . +..+++|++||.|.+||+....      .+..+..+... |++++++|.-
T Consensus       209 LlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~------~~sk~~~~~~v~v~dl~~hp~~  282 (307)
T KOG0316|consen  209 LLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET------QISKLSVVSTVIVTDLSCHPTM  282 (307)
T ss_pred             ecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccce------eeeeeccCCceeEEeeecccCc
Confidence            99999999999999998765555433  2 3489999999999999997443      45566667766 8999999987


Q ss_pred             CEEEEec
Q 043707          337 AVVYCGS  343 (347)
Q Consensus       337 ~~l~sgs  343 (347)
                      ..++++.
T Consensus       283 ~~f~~A~  289 (307)
T KOG0316|consen  283 DDFITAT  289 (307)
T ss_pred             cceeEec
Confidence            5555554

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1.8e-24  Score=200.93  Aligned_cols=191  Identities=20%  Similarity=0.342  Sum_probs=165.8

Q ss_pred             ccEEEEeec--CCEEEEecCCCcEEEEe--CCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceee
Q 043707          124 GHIYSLAAS--GDLLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHK  199 (347)
Q Consensus       124 ~~V~~l~~~--~~~l~tg~~dg~I~vwd--~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~  199 (347)
                      ..|-.++|.  .-+++++-.+|.|++||  ....+..|..|.++|..++|+|.+..|++|+.|-+|+||+.++.++....
T Consensus        10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL   89 (1202)
T KOG0292|consen   10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL   89 (1202)
T ss_pred             ccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhh
Confidence            345555554  55999999999999999  55778899999999999999999999999999999999999887654332


Q ss_pred             eecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCc
Q 043707          200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDA  279 (347)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~  279 (347)
                                                      .+|.+.|+.+.|++.-.+++++|+|-+|+||+..+.+|+..+.+|...
T Consensus        90 --------------------------------~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHY  137 (1202)
T KOG0292|consen   90 --------------------------------LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHY  137 (1202)
T ss_pred             --------------------------------ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceE
Confidence                                            269999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCC-CCEEEEEeCCCcEEEEEcccCCcc-----------------------ceeeehhhhhccCCcEEEEEEccC
Q 043707          280 INSVVAGF-DSLVFTGSADGTVKVWRRELQGKG-----------------------TKHFLAQVLLKQENAITALAVNQE  335 (347)
Q Consensus       280 v~~i~~~~-~~~l~s~~~dg~I~vwd~~~~~~~-----------------------~~~~~~~~~~~h~~~V~~l~~~p~  335 (347)
                      |.|..|+| +.++++++-|-+|+|||+....++                       ......+.+.+|...|+-++|+|.
T Consensus       138 VMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpT  217 (1202)
T KOG0292|consen  138 VMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPT  217 (1202)
T ss_pred             EEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCC
Confidence            99999999 459999999999999999632220                       122334567899999999999999


Q ss_pred             CCEEEEecCCC
Q 043707          336 SAVVYCGSSDG  346 (347)
Q Consensus       336 ~~~l~sgs~DG  346 (347)
                      -.+|++|++|.
T Consensus       218 lpliVSG~DDR  228 (1202)
T KOG0292|consen  218 LPLIVSGADDR  228 (1202)
T ss_pred             cceEEecCCcc
Confidence            99999999985

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.92  E-value=6.8e-24  Score=183.07  Aligned_cols=198  Identities=15%  Similarity=0.246  Sum_probs=166.9

Q ss_pred             ccceeEeeeeccccEEEEeecC--CEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 043707          112 CNGLIGSIVRKEGHIYSLAASG--DLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI  187 (347)
Q Consensus       112 ~~~~i~~l~~h~~~V~~l~~~~--~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~v  187 (347)
                      ++..+.++++|...|+.+.+++  ..+++++.|..|+||...  ........|.++|+.+..+|.|.||++++.||+...
T Consensus       250 s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~F  329 (506)
T KOG0289|consen  250 SNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAF  329 (506)
T ss_pred             hhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEE
Confidence            4567889999999999998764  588999999999999843  456677889999999999999999999999999999


Q ss_pred             EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 043707          188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC  267 (347)
Q Consensus       188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~  267 (347)
                      .|++++.........                              ...-.+++.+|||||.+|.+|..|+.++|||+..+
T Consensus       330 sd~~~g~~lt~vs~~------------------------------~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~  379 (506)
T KOG0289|consen  330 SDISSGSQLTVVSDE------------------------------TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ  379 (506)
T ss_pred             EEccCCcEEEEEeec------------------------------cccceeEEeeEcCCceEEeccCCCceEEEEEcCCc
Confidence            999988654332211                              02234899999999999999999999999999999


Q ss_pred             EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhcc-CCcEEEEEEccCCCEEEEecCC
Q 043707          268 KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQ-ENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       268 ~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h-~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                      ..+..|.+|.++|..|.|+.+| +|++++.|+.|++||++...      ..+++.-. ...|.++.|.+.|.+|+.+|.|
T Consensus       380 ~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~------n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~  453 (506)
T KOG0289|consen  380 TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK------NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD  453 (506)
T ss_pred             cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc------ccceeeccccccceeEEEcCCCCeEEeecce
Confidence            9999999999999999999999 89999999999999998443      23333222 2379999999999999999875

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=3e-24  Score=199.43  Aligned_cols=198  Identities=22%  Similarity=0.381  Sum_probs=172.4

Q ss_pred             ceeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEe--CCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707          114 GLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK  189 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd--~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd  189 (347)
                      -++..+..|+|+|..+.|.  +.++++|++|-+|+||+  ..+++.++.+|-.-|..+.|++.-.+|++++.|.+||||+
T Consensus        42 tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWN  121 (1202)
T KOG0292|consen   42 TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWN  121 (1202)
T ss_pred             hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEe
Confidence            3677888999999999875  55999999999999998  4567888999999999999999999999999999999999


Q ss_pred             cCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC--
Q 043707          190 VSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC--  267 (347)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~--  267 (347)
                      ..+++.+...                                .+|...|.|..|+|...+++++|-|-+|+|||+...  
T Consensus       122 wqsr~~iavl--------------------------------tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRk  169 (1202)
T KOG0292|consen  122 WQSRKCIAVL--------------------------------TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRK  169 (1202)
T ss_pred             ccCCceEEEE--------------------------------ecCceEEEeeccCCccceEEEecccceEEEEeecchhc
Confidence            9988754332                                379999999999999999999999999999998421  


Q ss_pred             -------------------------E--EEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhh
Q 043707          268 -------------------------K--CLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQV  319 (347)
Q Consensus       268 -------------------------~--~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~  319 (347)
                                               .  ....+.+|+..|+-++|+|.- +|++|+.|+.|++|....    ++.+.+.+
T Consensus       170 k~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne----tKaWEvDt  245 (1202)
T KOG0292|consen  170 KNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE----TKAWEVDT  245 (1202)
T ss_pred             cCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecc----ccceeehh
Confidence                                     0  123467899999999999975 999999999999999862    24566788


Q ss_pred             hhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          320 LLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       320 ~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      ..+|...|.++-|+|...+|++.|+|++
T Consensus       246 crgH~nnVssvlfhp~q~lIlSnsEDks  273 (1202)
T KOG0292|consen  246 CRGHYNNVSSVLFHPHQDLILSNSEDKS  273 (1202)
T ss_pred             hhcccCCcceEEecCccceeEecCCCcc
Confidence            9999999999999999999999999984

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.9e-23  Score=193.84  Aligned_cols=195  Identities=16%  Similarity=0.270  Sum_probs=160.6

Q ss_pred             ccceeEeeeeccccEEEEeec-CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEE
Q 043707          112 CNGLIGSIVRKEGHIYSLAAS-GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRI  187 (347)
Q Consensus       112 ~~~~i~~l~~h~~~V~~l~~~-~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~v  187 (347)
                      ...++..+++|.+.|+.+.|+ .++|++++.|++||||+..  +++..| .|..-|+||+|+| |.++|++|+.||+|||
T Consensus       358 ~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnPvDDryFiSGSLD~KvRi  436 (712)
T KOG0283|consen  358 SEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNPVDDRYFISGSLDGKVRL  436 (712)
T ss_pred             cccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEecccCCCcEeecccccceEE
Confidence            566788999999999999998 5599999999999999965  445555 5899999999999 8899999999999999


Q ss_pred             EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 043707          188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC  267 (347)
Q Consensus       188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~  267 (347)
                      |++...+......                                 -.+-|++++|.|+|+..+.|+.+|.+++|+....
T Consensus       437 WsI~d~~Vv~W~D---------------------------------l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~l  483 (712)
T KOG0283|consen  437 WSISDKKVVDWND---------------------------------LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGL  483 (712)
T ss_pred             eecCcCeeEeehh---------------------------------hhhhheeEEeccCCceEEEEEeccEEEEEEccCC
Confidence            9998775433222                                 3478999999999999999999999999999888


Q ss_pred             EEEEEEecC--------CCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCC--cEEEEEEccC
Q 043707          268 KCLESINAH--------DDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQEN--AITALAVNQE  335 (347)
Q Consensus       268 ~~~~~~~~h--------~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~--~V~~l~~~p~  335 (347)
                      +....+.-+        ...|+.+.|.|..  .|++.+.|..|+|+|.+...      ++..+.++..  .=....|+.|
T Consensus       484 k~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~------lv~KfKG~~n~~SQ~~Asfs~D  557 (712)
T KOG0283|consen  484 KLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD------LVHKFKGFRNTSSQISASFSSD  557 (712)
T ss_pred             eEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchh------hhhhhcccccCCcceeeeEccC
Confidence            766554321        2279999998865  68888999999999996332      6677776532  3457789999


Q ss_pred             CCEEEEecCCC
Q 043707          336 SAVVYCGSSDG  346 (347)
Q Consensus       336 ~~~l~sgs~DG  346 (347)
                      |++|+++++|.
T Consensus       558 gk~IVs~seDs  568 (712)
T KOG0283|consen  558 GKHIVSASEDS  568 (712)
T ss_pred             CCEEEEeecCc
Confidence            99999999874

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.92  E-value=8.3e-23  Score=177.94  Aligned_cols=195  Identities=27%  Similarity=0.475  Sum_probs=164.3

Q ss_pred             eeEeeeeccccEEEEeecC--CEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEec
Q 043707          115 LIGSIVRKEGHIYSLAASG--DLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKV  190 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~~~--~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~  190 (347)
                      .+..+..|...|.++.+..  +++++++.||.|++||..  +....+..|...|.+++|+|++.++++++.||.|++||+
T Consensus        85 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~  164 (289)
T cd00200          85 CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL  164 (289)
T ss_pred             ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEc
Confidence            5666778888999998764  688888889999999965  446667788899999999999888888888999999999


Q ss_pred             CCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEE
Q 043707          191 SRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL  270 (347)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~  270 (347)
                      +.++......                                .|...|.++.|++++..+++++.|+.|++||++.++.+
T Consensus       165 ~~~~~~~~~~--------------------------------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~  212 (289)
T cd00200         165 RTGKCVATLT--------------------------------GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL  212 (289)
T ss_pred             cccccceeEe--------------------------------cCccccceEEECCCcCEEEEecCCCcEEEEECCCCcee
Confidence            8654322211                                37778999999999999999999999999999999999


Q ss_pred             EEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          271 ESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       271 ~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      ..+..|...+.++.|++++ ++++++.||.|++||+....      ....+..|...|.+++|+|++.+|++++.||.
T Consensus       213 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  284 (289)
T cd00200         213 GTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE------CVQTLSGHTNSVTSLAWSPDGKRLASGSADGT  284 (289)
T ss_pred             cchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCce------eEEEccccCCcEEEEEECCCCCEEEEecCCCe
Confidence            9998899999999999987 66666669999999997432      44555688889999999999999999999974

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.92  E-value=7.4e-25  Score=184.29  Aligned_cols=195  Identities=19%  Similarity=0.364  Sum_probs=165.2

Q ss_pred             cceeEeeeeccccEEEEeecCCEEEEecCCCcEEEEeCCC-----cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 043707          113 NGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLK-----EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI  187 (347)
Q Consensus       113 ~~~i~~l~~h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~~-----~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~v  187 (347)
                      +.++.++.+|...|.-+.++..++++++.|.+|.|||+..     ..+.+.+|..+|+.+.|+.  ++|++++.|.+|++
T Consensus       267 ge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikv  344 (499)
T KOG0281|consen  267 GEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKV  344 (499)
T ss_pred             CchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEE
Confidence            4578889999999999999999999999999999999653     3556889999999999964  49999999999999


Q ss_pred             EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 043707          188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC  267 (347)
Q Consensus       188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~  267 (347)
                      |++.+.+......                                +|...|.|+.+.  ++++++|+.|.+|++||+..|
T Consensus       345 W~~st~efvRtl~--------------------------------gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G  390 (499)
T KOG0281|consen  345 WSTSTCEFVRTLN--------------------------------GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG  390 (499)
T ss_pred             Eeccceeeehhhh--------------------------------cccccceehhcc--CeEEEecCCCceEEEEecccc
Confidence            9999886433221                                588999998774  789999999999999999999


Q ss_pred             EEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCcc---ceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707          268 KCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKG---TKHFLAQVLLKQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       268 ~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~---~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      .++..+++|+.-|.||.|. +..+++|+.||+|+|||+......   ....++..+..|.+.|..+.|.  ...|++++.
T Consensus       391 ~cLRvLeGHEeLvRciRFd-~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssH  467 (499)
T KOG0281|consen  391 ACLRVLEGHEELVRCIRFD-NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSH  467 (499)
T ss_pred             HHHHHHhchHHhhhheeec-CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccC
Confidence            9999999999999999995 558999999999999999865431   1223466778899999999995  567777777


Q ss_pred             CC
Q 043707          345 DG  346 (347)
Q Consensus       345 DG  346 (347)
                      |.
T Consensus       468 dd  469 (499)
T KOG0281|consen  468 DD  469 (499)
T ss_pred             CC
Confidence            64

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.92  E-value=1.1e-24  Score=181.81  Aligned_cols=157  Identities=28%  Similarity=0.503  Sum_probs=136.0

Q ss_pred             eccccEEE--EeecCCEEEEecCCCcEEEEeCC--Cc--------ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707          121 RKEGHIYS--LAASGDLLYTGSDSKNIRVWKNL--KE--------FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW  188 (347)
Q Consensus       121 ~h~~~V~~--l~~~~~~l~tg~~dg~I~vwd~~--~~--------~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw  188 (347)
                      +.+.++.|  ++++|.+|++|+.||-|.+|+..  +.        ...|.-+..+|.|+.|+.|...+++|+.||+|+||
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            34455655  45678999999999999999832  11        22345578899999999999999999999999999


Q ss_pred             ecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCE
Q 043707          189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK  268 (347)
Q Consensus       189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~  268 (347)
                      .++++.+......                               .|...|+|+.|+.|+..+++++.|.+++|.-++.|+
T Consensus       291 ri~tG~ClRrFdr-------------------------------AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK  339 (508)
T KOG0275|consen  291 RIETGQCLRRFDR-------------------------------AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK  339 (508)
T ss_pred             EEecchHHHHhhh-------------------------------hhccCeeEEEEccCcchhhcccccceEEEeccccch
Confidence            9999976544332                               399999999999999999999999999999999999


Q ss_pred             EEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccC
Q 043707          269 CLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQ  308 (347)
Q Consensus       269 ~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~  308 (347)
                      +++.|++|...|+...|.+|| .+++++.||+|+||+..+.
T Consensus       340 ~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktt  380 (508)
T KOG0275|consen  340 CLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTT  380 (508)
T ss_pred             hHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcch
Confidence            999999999999999999998 9999999999999998753

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.92  E-value=1.1e-23  Score=177.83  Aligned_cols=194  Identities=19%  Similarity=0.365  Sum_probs=167.4

Q ss_pred             cceeEeeeeccccEEEEeecCC--EEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707          113 NGLIGSIVRKEGHIYSLAASGD--LLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW  188 (347)
Q Consensus       113 ~~~i~~l~~h~~~V~~l~~~~~--~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw  188 (347)
                      +.+..++.+|...|..++.+..  ||++++.|+.|+-||+.  +.++.+.+|-..|.|++.+|.-..|++|+.|.++|||
T Consensus       183 g~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvW  262 (460)
T KOG0285|consen  183 GQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVW  262 (460)
T ss_pred             CeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEe
Confidence            4577888899999999988754  99999999999999966  4578889999999999999988899999999999999


Q ss_pred             ecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCE
Q 043707          189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK  268 (347)
Q Consensus       189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~  268 (347)
                      |++++.....                                +.+|...|..+.+.|....+++|+.|++|++||++.++
T Consensus       263 DiRtr~~V~~--------------------------------l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk  310 (460)
T KOG0285|consen  263 DIRTRASVHV--------------------------------LSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK  310 (460)
T ss_pred             eecccceEEE--------------------------------ecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCc
Confidence            9998864332                                22699999999999988899999999999999999999


Q ss_pred             EEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          269 CLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       269 ~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      ...++..|...|.+++.+|.. .||+++.| .|+-|++..+.      ..+.+.+|..-|++++.+.| .++++|++.|
T Consensus       311 t~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~------f~~nlsgh~~iintl~~nsD-~v~~~G~dng  381 (460)
T KOG0285|consen  311 TMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGE------FLQNLSGHNAIINTLSVNSD-GVLVSGGDNG  381 (460)
T ss_pred             eeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccc------hhhccccccceeeeeeeccC-ceEEEcCCce
Confidence            999999999999999999997 55555555 68999997433      56668999999999999876 5677888766

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.92  E-value=1.5e-23  Score=195.76  Aligned_cols=190  Identities=28%  Similarity=0.488  Sum_probs=166.6

Q ss_pred             eeEe-eeeccccEEEEeec--CCEEEEecCCCcEEEEeC--CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707          115 LIGS-IVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKN--LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK  189 (347)
Q Consensus       115 ~i~~-l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd  189 (347)
                      .+.. +.+|.+.|.++.+.  +++|++|+.|.++++||.  ..+...+.+|.+.|.++...+.  ++++|+.|.+|++|+
T Consensus       240 ~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~--~~~sgs~D~tVkVW~  317 (537)
T KOG0274|consen  240 LILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPF--LLVSGSRDNTVKVWD  317 (537)
T ss_pred             EEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCc--eEeeccCCceEEEEe
Confidence            4555 89999999999987  889999999999999994  4678899999999999988665  889999999999999


Q ss_pred             cCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEE
Q 043707          190 VSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC  269 (347)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~  269 (347)
                      +.++......                                .+|.++|.++..+  +.++++|+.|++|+|||+.++++
T Consensus       318 v~n~~~l~l~--------------------------------~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~c  363 (537)
T KOG0274|consen  318 VTNGACLNLL--------------------------------RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKC  363 (537)
T ss_pred             ccCcceEEEe--------------------------------ccccccEEEEEec--CCEEEEEecCceEEEEEhhhcee
Confidence            9977533222                                1499999999998  78999999999999999999999


Q ss_pred             EEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          270 LESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       270 ~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      ++++.+|...|.++.+.....+++|+.|++|++||++...     .+...+.+|..-|..+.+  .+++|++++.||+
T Consensus       364 l~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~-----~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~  434 (537)
T KOG0274|consen  364 LKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKR-----KCIHTLQGHTSLVSSLLL--RDNFLVSSSADGT  434 (537)
T ss_pred             eeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchh-----hhhhhhcCCccccccccc--ccceeEecccccc
Confidence            9999999999999988766799999999999999998552     378999999999977766  4789999999984

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.4e-23  Score=194.72  Aligned_cols=195  Identities=24%  Similarity=0.382  Sum_probs=151.4

Q ss_pred             eEeee-eccccEEEEee--cCCEEEEecCCCcEEEEeCCC----------------------------------------
Q 043707          116 IGSIV-RKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK----------------------------------------  152 (347)
Q Consensus       116 i~~l~-~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~----------------------------------------  152 (347)
                      ...+. +|++.|+++.|  +|+|||+|+.|+.|+||.+.+                                        
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence            44555 89999999987  599999999999999996322                                        


Q ss_pred             ----------------------cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccce
Q 043707          153 ----------------------EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDY  210 (347)
Q Consensus       153 ----------------------~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~  210 (347)
                                            ++..|.+|.+.|.+|.|+.++ +|++++.|.+||+|++...+++...           
T Consensus       339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F-----------  406 (712)
T KOG0283|consen  339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF-----------  406 (712)
T ss_pred             cccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEE-----------
Confidence                                  123367899999999999876 9999999999999999877644333           


Q ss_pred             EEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC
Q 043707          211 VKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS  289 (347)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~  289 (347)
                                            .|.+-|+|++|+| |.+++++|+-||.|+||++.+.+.+.-...+ .-|++++|.|||
T Consensus       407 ----------------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdG  463 (712)
T KOG0283|consen  407 ----------------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDG  463 (712)
T ss_pred             ----------------------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCC
Confidence                                  4999999999999 7899999999999999999887776655544 679999999999


Q ss_pred             -EEEEEeCCCcEEEEEcccCCccceee-ehhh-hhccCCcEEEEEEccCC-CEEEEecCC
Q 043707          290 -LVFTGSADGTVKVWRRELQGKGTKHF-LAQV-LLKQENAITALAVNQES-AVVYCGSSD  345 (347)
Q Consensus       290 -~l~s~~~dg~I~vwd~~~~~~~~~~~-~~~~-~~~h~~~V~~l~~~p~~-~~l~sgs~D  345 (347)
                       ..++|+.+|.+++|+........... ..+. -......||.+.|.|.. ..|++.+.|
T Consensus       464 k~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnD  523 (712)
T KOG0283|consen  464 KGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSND  523 (712)
T ss_pred             ceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCC
Confidence             88899999999999997443211111 0110 01112279999999855 345555555

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.91  E-value=2e-22  Score=200.95  Aligned_cols=201  Identities=20%  Similarity=0.284  Sum_probs=159.5

Q ss_pred             ceeEeeeeccccEEEEeec---CCEEEEecCCCcEEEEeCCC--cceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEE
Q 043707          114 GLIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRI  187 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~~--~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~v  187 (347)
                      ..+..+.+|.+.|++++++   +.+|++|+.||+|++||...  .+..+..+ ..|.++.|.+ ++.+|++|+.||.|++
T Consensus       566 ~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~i  644 (793)
T PLN00181        566 QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYY  644 (793)
T ss_pred             eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEE
Confidence            4677788999999999985   56999999999999999653  34455543 6799999965 7899999999999999


Q ss_pred             EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC-
Q 043707          188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD-  266 (347)
Q Consensus       188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~-  266 (347)
                      ||++..+.....                               ..+|...|.++.|. ++.+|++++.|++|++||++. 
T Consensus       645 wD~~~~~~~~~~-------------------------------~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~  692 (793)
T PLN00181        645 YDLRNPKLPLCT-------------------------------MIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMS  692 (793)
T ss_pred             EECCCCCccceE-------------------------------ecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCC
Confidence            999865421111                               12488999999997 678999999999999999974 


Q ss_pred             -----CEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCcccee-------eehhhhhccCCcEEEEEEc
Q 043707          267 -----CKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKH-------FLAQVLLKQENAITALAVN  333 (347)
Q Consensus       267 -----~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~-------~~~~~~~~h~~~V~~l~~~  333 (347)
                           .+++..+.+|...+.++.|++++ +|++|+.|+.|++|+..........       ........|...|.+++|+
T Consensus       693 ~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws  772 (793)
T PLN00181        693 ISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWR  772 (793)
T ss_pred             ccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEc
Confidence                 36788999999999999999987 9999999999999997643210000       0011123456689999999


Q ss_pred             cCCCEEEEecCCCC
Q 043707          334 QESAVVYCGSSDGL  347 (347)
Q Consensus       334 p~~~~l~sgs~DG~  347 (347)
                      |++..|++|+.||.
T Consensus       773 ~~~~~lva~~~dG~  786 (793)
T PLN00181        773 GQSSTLVAANSTGN  786 (793)
T ss_pred             CCCCeEEEecCCCc
Confidence            99999999999984

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=5.1e-24  Score=171.35  Aligned_cols=193  Identities=20%  Similarity=0.236  Sum_probs=158.3

Q ss_pred             eccccEEEEe--ecCCEEEEecCCCcEEEEeCC-----CcceeeecCCCCeeEEEEeC--CCCEEEEEeCCCcEEEEecC
Q 043707          121 RKEGHIYSLA--ASGDLLYTGSDSKNIRVWKNL-----KEFSGFKSNSGLVKAIIITG--DSNKIFTGHQDGKIRIWKVS  191 (347)
Q Consensus       121 ~h~~~V~~l~--~~~~~l~tg~~dg~I~vwd~~-----~~~~~~~~h~~~V~~l~~sp--~~~~l~s~~~Dg~I~vwd~~  191 (347)
                      .|++.|....  +.|++|+|++.|++|+|+...     +.+..+.+|.++|+.++|..  .|..|++|+.||+|.||.-.
T Consensus         9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~   88 (299)
T KOG1332|consen    9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE   88 (299)
T ss_pred             hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecC
Confidence            5777776644  679999999999999999843     44678999999999999954  89999999999999999988


Q ss_pred             CCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC--CCEEEEEeCCCcEEEEeCCCC--
Q 043707          192 RKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE--QGLLYSGSWDKTLKVWRISDC--  267 (347)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~dg~i~vwdl~~~--  267 (347)
                      .++-.....                              ...|...|++++|.|.  |-.|++++.||.|.|.+.+..  
T Consensus        89 ~g~w~k~~e------------------------------~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~  138 (299)
T KOG1332|consen   89 NGRWTKAYE------------------------------HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG  138 (299)
T ss_pred             CCchhhhhh------------------------------hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC
Confidence            774221111                              1148999999999996  668999999999999998754  


Q ss_pred             -EEEEEEecCCCcEEEEEeCCC---C------------EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEE
Q 043707          268 -KCLESINAHDDAINSVVAGFD---S------------LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALA  331 (347)
Q Consensus       268 -~~~~~~~~h~~~v~~i~~~~~---~------------~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~  331 (347)
                       ...+...+|.-.|+++.|.|.   |            .|++|+.|+.|+||+....    ...+...|.+|...|.+++
T Consensus       139 w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~----~w~~e~~l~~H~dwVRDVA  214 (299)
T KOG1332|consen  139 WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD----SWKLERTLEGHKDWVRDVA  214 (299)
T ss_pred             ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc----chhhhhhhhhcchhhhhhh
Confidence             233445789999999999885   2            5999999999999998743    3446677999999999999


Q ss_pred             EccCC----CEEEEecCCCC
Q 043707          332 VNQES----AVVYCGSSDGL  347 (347)
Q Consensus       332 ~~p~~----~~l~sgs~DG~  347 (347)
                      |.|.-    .+||+||.||+
T Consensus       215 waP~~gl~~s~iAS~SqDg~  234 (299)
T KOG1332|consen  215 WAPSVGLPKSTIASCSQDGT  234 (299)
T ss_pred             hccccCCCceeeEEecCCCc
Confidence            99964    68999999985

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=5.4e-24  Score=195.27  Aligned_cols=198  Identities=23%  Similarity=0.391  Sum_probs=165.9

Q ss_pred             cceeEeeeeccccEEEEeec---CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEE
Q 043707          113 NGLIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIR  186 (347)
Q Consensus       113 ~~~i~~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~  186 (347)
                      ++++..+..|+..|.+++|+   ..+|++|+.||+|++||+.  +....+.+....|.+++|+| .+.+|+++...|.++
T Consensus       123 nk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lq  202 (839)
T KOG0269|consen  123 NKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQ  202 (839)
T ss_pred             chhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEE
Confidence            44667888999999999986   6799999999999999965  45677888889999999999 778999999999999


Q ss_pred             EEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 043707          187 IWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD  266 (347)
Q Consensus       187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~  266 (347)
                      +||++.......+..                               .|.++|.|+.|+|++.+||+|+.|+.|+|||+.+
T Consensus       203 lWDlRqp~r~~~k~~-------------------------------AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~  251 (839)
T KOG0269|consen  203 LWDLRQPDRCEKKLT-------------------------------AHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTD  251 (839)
T ss_pred             EeeccCchhHHHHhh-------------------------------cccCceEEEeecCCCceeeecCCCccEEEEeccC
Confidence            999997654333322                               4999999999999999999999999999999976


Q ss_pred             CEE--EEEEecCCCcEEEEEeCCCC--EEEEEe--CCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEcc-CCCEE
Q 043707          267 CKC--LESINAHDDAINSVVAGFDS--LVFTGS--ADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQ-ESAVV  339 (347)
Q Consensus       267 ~~~--~~~~~~h~~~v~~i~~~~~~--~l~s~~--~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l  339 (347)
                      .+.  +.++. -..+|.+|.|-|+.  .|++++  .|-.|+|||++-     ...+..++..|...++.++|.. |...|
T Consensus       252 ~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR-----PYIP~~t~~eH~~~vt~i~W~~~d~~~l  325 (839)
T KOG0269|consen  252 SRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR-----PYIPYATFLEHTDSVTGIAWDSGDRINL  325 (839)
T ss_pred             CCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecc-----ccccceeeeccCccccceeccCCCceee
Confidence            543  34443 34689999999986  777776  588999999983     3457888999999999999976 45789


Q ss_pred             EEecCCCC
Q 043707          340 YCGSSDGL  347 (347)
Q Consensus       340 ~sgs~DG~  347 (347)
                      .+++.||+
T Consensus       326 ~s~sKD~t  333 (839)
T KOG0269|consen  326 WSCSKDGT  333 (839)
T ss_pred             EeecCccH
Confidence            99999985

>PTZ00421 coronin; Provisional

Probab=99.91  E-value=1.3e-22  Score=189.03  Aligned_cols=158  Identities=20%  Similarity=0.278  Sum_probs=129.1

Q ss_pred             eeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeec
Q 043707          156 GFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRH  234 (347)
Q Consensus       156 ~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  234 (347)
                      .+.+|.+.|.+++|+| ++++|++|+.|++|++||+.........                         ......+.+|
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~-------------------------~~~l~~L~gH  124 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNI-------------------------SDPIVHLQGH  124 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccccc-------------------------CcceEEecCC
Confidence            4778999999999999 8889999999999999999765321000                         0011123369


Q ss_pred             CCCeeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccc
Q 043707          235 YDAVSCLSLNAEQ-GLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGT  312 (347)
Q Consensus       235 ~~~V~~l~~~~~~-~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~  312 (347)
                      ...|.+++|+|++ ++|++++.|++|+|||+++++.+..+..|...|.+++|+|++ +|++++.|++|+|||++.+.   
T Consensus       125 ~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~---  201 (493)
T PTZ00421        125 TKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT---  201 (493)
T ss_pred             CCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc---
Confidence            9999999999975 799999999999999999999999999999999999999998 89999999999999998543   


Q ss_pred             eeeehhhhhccCCc-EEEEEEccCCCEEEEecC
Q 043707          313 KHFLAQVLLKQENA-ITALAVNQESAVVYCGSS  344 (347)
Q Consensus       313 ~~~~~~~~~~h~~~-V~~l~~~p~~~~l~sgs~  344 (347)
                         ....+.+|... +..+.|.+++..|++++.
T Consensus       202 ---~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~  231 (493)
T PTZ00421        202 ---IVSSVEAHASAKSQRCLWAKRKDLIITLGC  231 (493)
T ss_pred             ---EEEEEecCCCCcceEEEEcCCCCeEEEEec
Confidence               34556677654 457889998888877653

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.4e-23  Score=189.22  Aligned_cols=206  Identities=21%  Similarity=0.421  Sum_probs=173.1

Q ss_pred             eeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCC----cceeeecCCCCeeEEEE-eCCCCEEEEEeCCCcEEE
Q 043707          115 LIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK----EFSGFKSNSGLVKAIII-TGDSNKIFTGHQDGKIRI  187 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~----~~~~~~~h~~~V~~l~~-sp~~~~l~s~~~Dg~I~v  187 (347)
                      .+.++..|.+.|..+..  +++.|++++.|-+|++|+...    +..++..|...|.|+++ .++...+++|+.|+.|.+
T Consensus        65 ~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~Ifl  144 (735)
T KOG0308|consen   65 YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFL  144 (735)
T ss_pred             hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEE
Confidence            36678889999988774  577999999999999998543    46678899999999999 778889999999999999


Q ss_pred             EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 043707          188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC  267 (347)
Q Consensus       188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~  267 (347)
                      ||++++...........+.                     ..+..++...|.+++.++.+..+++|+..+.|++||.++.
T Consensus       145 WDin~~~~~l~~s~n~~t~---------------------~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~  203 (735)
T KOG0308|consen  145 WDINTGTATLVASFNNVTV---------------------NSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC  203 (735)
T ss_pred             EEccCcchhhhhhcccccc---------------------ccCCCCCccceeeeecCCcceEEEecCcccceEEeccccc
Confidence            9999874311111000000                     0001158889999999999999999999999999999999


Q ss_pred             EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          268 KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       268 ~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      +.+..+++|...|.++..++|| .+++++.||+|++||+..+      .++.++..|...|+++..+|+-.++++|+.||
T Consensus       204 ~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ------rCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~  277 (735)
T KOG0308|consen  204 KKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ------RCLATYIVHKEGVWALQSSPSFTHVYSGGRDG  277 (735)
T ss_pred             cceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc------ceeeeEEeccCceEEEeeCCCcceEEecCCCC
Confidence            9999999999999999999998 9999999999999999733      37788999999999999999999999999998


Q ss_pred             C
Q 043707          347 L  347 (347)
Q Consensus       347 ~  347 (347)
                      .
T Consensus       278 ~  278 (735)
T KOG0308|consen  278 N  278 (735)
T ss_pred             c
Confidence            3

>PTZ00420 coronin; Provisional

Probab=99.91  E-value=3e-22  Score=187.78  Aligned_cols=177  Identities=15%  Similarity=0.230  Sum_probs=138.6

Q ss_pred             ecCCCcEEEEeCCC--cceeeecCCCCeeEEEEeCC-CCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEecc
Q 043707          139 GSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIITGD-SNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSV  215 (347)
Q Consensus       139 g~~dg~I~vwd~~~--~~~~~~~h~~~V~~l~~sp~-~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (347)
                      |+.++.|++|+..+  .+..+.+|.+.|.+++|+|+ +.+|++|+.||+|+|||+.+........ .             
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i-~-------------  115 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEI-K-------------  115 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccc-c-------------
Confidence            67789999998654  45678899999999999996 7899999999999999998653211000 0             


Q ss_pred             CCCeEEEEeecceeeeeecCCCeeEEEEcCCCCE-EEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEE
Q 043707          216 NPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGL-LYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFT  293 (347)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s  293 (347)
                                .......+|...|.+++|+|++.. |++++.|++|+|||+++++.+..+. |...|.+++|+++| +|++
T Consensus       116 ----------~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat  184 (568)
T PTZ00420        116 ----------DPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSG  184 (568)
T ss_pred             ----------cceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEE
Confidence                      001122358999999999998765 5789999999999999998887776 56789999999998 8888


Q ss_pred             EeCCCcEEEEEcccCCccceeeehhhhhccCCcEEE-----EEEccCCCEEEEecCCC
Q 043707          294 GSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITA-----LAVNQESAVVYCGSSDG  346 (347)
Q Consensus       294 ~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~-----l~~~p~~~~l~sgs~DG  346 (347)
                      ++.|+.|+|||++.+.      .+..+.+|.+.+..     ..|++++.+|+++|.|+
T Consensus       185 ~s~D~~IrIwD~Rsg~------~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~  236 (568)
T PTZ00420        185 TCVGKHMHIIDPRKQE------IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSK  236 (568)
T ss_pred             EecCCEEEEEECCCCc------EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCC
Confidence            8899999999998543      44567788765433     34568899999988774

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.91  E-value=7.5e-24  Score=170.97  Aligned_cols=201  Identities=19%  Similarity=0.300  Sum_probs=158.2

Q ss_pred             ceeEeeeeccccEEEEeecC--CEEEEecCCCcEEEEeC--CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707          114 GLIGSIVRKEGHIYSLAASG--DLLYTGSDSKNIRVWKN--LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK  189 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~~~--~~l~tg~~dg~I~vwd~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd  189 (347)
                      .-|+++.+|++.|+.-..+.  .+-++++.|-+-+|||.  ...+..| .|..-|.+++|+.|.++|++|+.+..+||+|
T Consensus        50 dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfd  128 (334)
T KOG0278|consen   50 DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFD  128 (334)
T ss_pred             CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhh
Confidence            36899999999999877654  47888999999999994  3455555 4778899999999999999999999999999


Q ss_pred             cCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEE
Q 043707          190 VSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC  269 (347)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~  269 (347)
                      ++..+......-                               +|.+.|..+.|....+.+++++.|++|++||.++++.
T Consensus       129 ln~p~App~E~~-------------------------------ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~  177 (334)
T KOG0278|consen  129 LNRPKAPPKEIS-------------------------------GHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE  177 (334)
T ss_pred             ccCCCCCchhhc-------------------------------CCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE
Confidence            987654333221                               5999999999999889999999999999999999999


Q ss_pred             EEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCcc-------------------------c----------ee
Q 043707          270 LESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKG-------------------------T----------KH  314 (347)
Q Consensus       270 ~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~-------------------------~----------~~  314 (347)
                      ++++.. ...|+++..+++|.+++-...+.|++||...-+.-                         .          ..
T Consensus       178 v~sL~~-~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tg  256 (334)
T KOG0278|consen  178 VQSLEF-NSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTG  256 (334)
T ss_pred             EEEEec-CCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCC
Confidence            988873 44577777777776666666667777766532210                         0          00


Q ss_pred             eehhh-hhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          315 FLAQV-LLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       315 ~~~~~-~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      ..+.. -.+|.++|.||.|+|+|..-++||.||+
T Consensus       257 eEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT  290 (334)
T KOG0278|consen  257 EEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT  290 (334)
T ss_pred             ceeeecccCCCCceEEEEECCCCceeeccCCCce
Confidence            01112 3688999999999999999999999996

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.91  E-value=4.4e-23  Score=179.15  Aligned_cols=202  Identities=18%  Similarity=0.255  Sum_probs=165.3

Q ss_pred             eEeeeeccccEEEEee---cCCEEEEecCCCcEEEEeCCCc------------ceeeecCCCCeeEEEEeC-CCCEEEEE
Q 043707          116 IGSIVRKEGHIYSLAA---SGDLLYTGSDSKNIRVWKNLKE------------FSGFKSNSGLVKAIIITG-DSNKIFTG  179 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~---~~~~l~tg~~dg~I~vwd~~~~------------~~~~~~h~~~V~~l~~sp-~~~~l~s~  179 (347)
                      +.....|.+.|..+..   +..++++++..+.|+|||..+.            -..+.+|...=++|.|++ ..-.|++|
T Consensus       117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~  196 (422)
T KOG0264|consen  117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG  196 (422)
T ss_pred             EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec
Confidence            3334469999988874   5779999999999999994321            126788998888999999 44589999


Q ss_pred             eCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCc
Q 043707          180 HQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKT  258 (347)
Q Consensus       180 ~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~  258 (347)
                      +.|++|++||+.........                         ........+|.+.|..++|++. ..++++++.|+.
T Consensus       197 ~~d~~i~lwdi~~~~~~~~~-------------------------~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~  251 (422)
T KOG0264|consen  197 SDDHTICLWDINAESKEDKV-------------------------VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGK  251 (422)
T ss_pred             cCCCcEEEEeccccccCCcc-------------------------ccceEEeecCCcceehhhccccchhhheeecCCCe
Confidence            99999999999876432000                         0122333469999999999994 678899999999


Q ss_pred             EEEEeCC--CCEEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEcc
Q 043707          259 LKVWRIS--DCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQ  334 (347)
Q Consensus       259 i~vwdl~--~~~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p  334 (347)
                      +.|||+|  +.++....++|.+.|+|++|+|-+  +||+|+.|++|++||+|...+     ++..+.+|...|..|.|+|
T Consensus       252 L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-----~lh~~e~H~dev~~V~WSP  326 (422)
T KOG0264|consen  252 LMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-----PLHTFEGHEDEVFQVEWSP  326 (422)
T ss_pred             EEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-----CceeccCCCcceEEEEeCC
Confidence            9999999  667778889999999999999965  899999999999999997665     7889999999999999999


Q ss_pred             CC-CEEEEecCCCC
Q 043707          335 ES-AVVYCGSSDGL  347 (347)
Q Consensus       335 ~~-~~l~sgs~DG~  347 (347)
                      .. ..||+++.||.
T Consensus       327 h~etvLASSg~D~r  340 (422)
T KOG0264|consen  327 HNETVLASSGTDRR  340 (422)
T ss_pred             CCCceeEecccCCc
Confidence            75 78999999974

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=9.4e-23  Score=184.38  Aligned_cols=210  Identities=20%  Similarity=0.319  Sum_probs=174.4

Q ss_pred             CCCCCCCCccccccc-------------ceeEeeee-ccccEEEEeecCCEEEEecCCCcEEEEeCCC--c-ceeeecCC
Q 043707           99 MPPYSPNENLLSSCN-------------GLIGSIVR-KEGHIYSLAASGDLLYTGSDSKNIRVWKNLK--E-FSGFKSNS  161 (347)
Q Consensus        99 ~~~~~p~~~~~~~~~-------------~~i~~l~~-h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~~--~-~~~~~~h~  161 (347)
                      ...|+++|..++...             ..+..+.+ |.+.|-+++|++..+.+|+.|+.|..+|+..  . ...+.+|.
T Consensus       222 Sv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~  301 (484)
T KOG0305|consen  222 SVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHR  301 (484)
T ss_pred             EEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhccc
Confidence            336888888775431             24566677 9999999999999999999999999999542  2 33488999


Q ss_pred             CCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEE
Q 043707          162 GLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCL  241 (347)
Q Consensus       162 ~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  241 (347)
                      ..|..++|++++.++++|+.|+.+.|||.....+....                                ..|..+|..+
T Consensus       302 qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~--------------------------------~~H~aAVKA~  349 (484)
T KOG0305|consen  302 QEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTF--------------------------------TEHTAAVKAL  349 (484)
T ss_pred             ceeeeeEECCCCCeeccCCCccceEeccCCCccccEEE--------------------------------eccceeeeEe
Confidence            99999999999999999999999999999554433222                                2599999999


Q ss_pred             EEcC-CCCEEEEEe--CCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC--EEEE-EeCCCcEEEEEcccCCccceee
Q 043707          242 SLNA-EQGLLYSGS--WDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFT-GSADGTVKVWRRELQGKGTKHF  315 (347)
Q Consensus       242 ~~~~-~~~~l~s~s--~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~--~l~s-~~~dg~I~vwd~~~~~~~~~~~  315 (347)
                      +|+| ...+||+|+  .|+.|++||..+++.+..+.. ...|..|.|++..  ++.+ |-.++.|.||+.....      
T Consensus       350 awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~------  422 (484)
T KOG0305|consen  350 AWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK------  422 (484)
T ss_pred             eeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc------
Confidence            9999 577899875  599999999999999988874 4679999999986  4444 4468899999997533      


Q ss_pred             ehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          316 LAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       316 ~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      +...+.+|...|..++++|||..|++|+.|.|
T Consensus       423 ~~~~l~gH~~RVl~la~SPdg~~i~t~a~DET  454 (484)
T KOG0305|consen  423 LVAELLGHTSRVLYLALSPDGETIVTGAADET  454 (484)
T ss_pred             eeeeecCCcceeEEEEECCCCCEEEEecccCc
Confidence            67889999999999999999999999999975

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.90  E-value=2.7e-23  Score=182.87  Aligned_cols=198  Identities=18%  Similarity=0.250  Sum_probs=150.0

Q ss_pred             eEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCCc----------------------------------------
Q 043707          116 IGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKE----------------------------------------  153 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~~----------------------------------------  153 (347)
                      -..+++|+..|.++..  +|-.|++|+.|-+|++||+...                                        
T Consensus       160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak  239 (641)
T KOG0772|consen  160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK  239 (641)
T ss_pred             eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence            4567788888888775  5789999999999999984110                                        


Q ss_pred             ---------------------ceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceE
Q 043707          154 ---------------------FSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYV  211 (347)
Q Consensus       154 ---------------------~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~  211 (347)
                                           +..-++|...++|.+|+| +...|+||+.||++|+||++..+...........      
T Consensus       240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~------  313 (641)
T KOG0772|consen  240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA------  313 (641)
T ss_pred             EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC------
Confidence                                 011247888899999999 5568999999999999999876532221111000      


Q ss_pred             EeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCE--E-EEEEecCCC--cEEEEEeC
Q 043707          212 KSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK--C-LESINAHDD--AINSVVAG  286 (347)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~--~-~~~~~~h~~--~v~~i~~~  286 (347)
                                          .+..-.++.++|++++.++++|+.||.|.+|+.+...  + ...-++|..  .|+||.|+
T Consensus       314 --------------------~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS  373 (641)
T KOG0772|consen  314 --------------------GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS  373 (641)
T ss_pred             --------------------CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEec
Confidence                                0244568899999999999999999999999986442  2 233357876  89999999


Q ss_pred             CCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhcc--CCcEEEEEEccCCCEEEEecC
Q 043707          287 FDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQ--ENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       287 ~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h--~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      +|| +|++-+.|++++|||++...+     ++....+-  ..+-+.++|+|+.++|++|.+
T Consensus       374 ~dg~~LlSRg~D~tLKvWDLrq~kk-----pL~~~tgL~t~~~~tdc~FSPd~kli~TGtS  429 (641)
T KOG0772|consen  374 YDGNYLLSRGFDDTLKVWDLRQFKK-----PLNVRTGLPTPFPGTDCCFSPDDKLILTGTS  429 (641)
T ss_pred             cccchhhhccCCCceeeeecccccc-----chhhhcCCCccCCCCccccCCCceEEEeccc
Confidence            998 999999999999999996654     44444332  335689999999999999875

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=1.5e-23  Score=177.30  Aligned_cols=226  Identities=16%  Similarity=0.235  Sum_probs=171.4

Q ss_pred             cceeEeeeeccccEEEEeecCC---EEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 043707          113 NGLIGSIVRKEGHIYSLAASGD---LLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI  187 (347)
Q Consensus       113 ~~~i~~l~~h~~~V~~l~~~~~---~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~v  187 (347)
                      ...++.|.+|.+.|.|++-+.+   .+++|+.||.|+|||+.  .+...+++|.+.|..|++..  ..+++++.|.+|+.
T Consensus        56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~  133 (433)
T KOG0268|consen   56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQ  133 (433)
T ss_pred             ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceee
Confidence            4468889999999999997755   68999999999999965  56889999999999999987  58999999999999


Q ss_pred             EecCCCCCceeeeecc-c---c--cccceEEeccCCCeEEEEeeccee-eeeecCCCeeEEEEcCC-CCEEEEEeCCCcE
Q 043707          188 WKVSRKNPSVHKRVGS-L---P--TFKDYVKSSVNPKNYVEVRRNRNV-LKIRHYDAVSCLSLNAE-QGLLYSGSWDKTL  259 (347)
Q Consensus       188 wd~~~~~~~~~~~~~~-~---~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i  259 (347)
                      |.++.. +........ +   .  .....+..+.....+++..+.... .+.-..+.|.++.|+|- ..+|+++..|+.|
T Consensus       134 wk~~~~-p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI  212 (433)
T KOG0268|consen  134 WKIDGP-PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI  212 (433)
T ss_pred             eeccCC-cceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence            998763 111111000 0   0  001112222222223333222222 22235677899999995 5678888899999


Q ss_pred             EEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCE
Q 043707          260 KVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAV  338 (347)
Q Consensus       260 ~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~  338 (347)
                      .+||++++.+++.+. -...-+.|+|+|+. .|++|.+|..++.||++....     ++....+|.++|.+|.|+|.|+-
T Consensus       213 vLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~-----p~~v~~dhvsAV~dVdfsptG~E  286 (433)
T KOG0268|consen  213 VLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSR-----PLNVHKDHVSAVMDVDFSPTGQE  286 (433)
T ss_pred             EEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcc-----cchhhcccceeEEEeccCCCcch
Confidence            999999999988775 34456889999976 777899999999999997655     88899999999999999999999


Q ss_pred             EEEecCCCC
Q 043707          339 VYCGSSDGL  347 (347)
Q Consensus       339 l~sgs~DG~  347 (347)
                      +++||.|.+
T Consensus       287 fvsgsyDks  295 (433)
T KOG0268|consen  287 FVSGSYDKS  295 (433)
T ss_pred             hccccccce
Confidence            999999964

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.3e-22  Score=177.63  Aligned_cols=209  Identities=22%  Similarity=0.376  Sum_probs=166.8

Q ss_pred             CCCCCCCCccccccc--ce-----------eEeeeeccccEEEEee---cCCEEEEecCCCcEEEEeCCCc--ceeeecC
Q 043707           99 MPPYSPNENLLSSCN--GL-----------IGSIVRKEGHIYSLAA---SGDLLYTGSDSKNIRVWKNLKE--FSGFKSN  160 (347)
Q Consensus        99 ~~~~~p~~~~~~~~~--~~-----------i~~l~~h~~~V~~l~~---~~~~l~tg~~dg~I~vwd~~~~--~~~~~~h  160 (347)
                      ...|..+|.+++.+.  |.           +..+.+|+.+|..+.|   ++..|++|++|+.+++||..+.  ...+.+|
T Consensus        73 s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~h  152 (487)
T KOG0310|consen   73 SVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGH  152 (487)
T ss_pred             EEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCC
Confidence            346778888886543  22           3446679998888775   4669999999999999996644  3367899


Q ss_pred             CCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCee
Q 043707          161 SGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVS  239 (347)
Q Consensus       161 ~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  239 (347)
                      +..|.|.+|+| ++..++||+.||+||+||.+.... .                               ...+.|..+|.
T Consensus       153 tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~-~-------------------------------v~elnhg~pVe  200 (487)
T KOG0310|consen  153 TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS-R-------------------------------VVELNHGCPVE  200 (487)
T ss_pred             cceeEeeccccCCCeEEEecCCCceEEEEEeccCCc-e-------------------------------eEEecCCCcee
Confidence            99999999999 566899999999999999987741 1                               11224999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCC-EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeeh
Q 043707          240 CLSLNAEQGLLYSGSWDKTLKVWRISDC-KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLA  317 (347)
Q Consensus       240 ~l~~~~~~~~l~s~s~dg~i~vwdl~~~-~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~  317 (347)
                      .+.+-|.|.++++++ ...++|||+-+| +.+..+..|...|+|+.+..++ .|++|+-|+.|++||+..-+      ..
T Consensus       201 ~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~K------vv  273 (487)
T KOG0310|consen  201 SVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYK------VV  273 (487)
T ss_pred             eEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceE------EE
Confidence            999999999999988 568999999855 5555566699999999998876 99999999999999965221      22


Q ss_pred             hhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          318 QVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       318 ~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      ..+ .-.++|.+++.+|+++.++.|-.||+
T Consensus       274 ~s~-~~~~pvLsiavs~dd~t~viGmsnGl  302 (487)
T KOG0310|consen  274 HSW-KYPGPVLSIAVSPDDQTVVIGMSNGL  302 (487)
T ss_pred             Eee-ecccceeeEEecCCCceEEEecccce
Confidence            222 34679999999999999999999985

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.90  E-value=2.9e-23  Score=181.47  Aligned_cols=229  Identities=15%  Similarity=0.203  Sum_probs=157.1

Q ss_pred             cceeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCCCcceeeecCC-CCeeEEEEeCCC-CEEEEEeCCCcEEEE
Q 043707          113 NGLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKEFSGFKSNS-GLVKAIIITGDS-NKIFTGHQDGKIRIW  188 (347)
Q Consensus       113 ~~~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~~~~~~~~~h~-~~V~~l~~sp~~-~~l~s~~~Dg~I~vw  188 (347)
                      .++++++.+|..+|.++.|+  |..+++++-|+.|++||+++.......|. ..+.|+.|.|++ +.|++|+.|+.|+.|
T Consensus       248 ~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~w  327 (503)
T KOG0282|consen  248 RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQW  327 (503)
T ss_pred             cceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEE
Confidence            56899999999999999885  78999999999999999887666555555 468899999977 889999999999999


Q ss_pred             ecCCCCCcee--------eeecccccccceEEeccCCCeEEEEeecceeeee-e--cCCCeeEEEEcCCCCEEEEEeCCC
Q 043707          189 KVSRKNPSVH--------KRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKI-R--HYDAVSCLSLNAEQGLLYSGSWDK  257 (347)
Q Consensus       189 d~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--h~~~V~~l~~~~~~~~l~s~s~dg  257 (347)
                      |+++++....        ..+..++....++.+..+....+.-.+....+.. .  +.....||..+|++.+++.-+.|+
T Consensus       328 DiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN  407 (503)
T KOG0282|consen  328 DIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDN  407 (503)
T ss_pred             eccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCc
Confidence            9999874322        1222223333333333333222211111111111 1  112234455555555555555555


Q ss_pred             cEEEEeCCCC---EEEEEEecCC--CcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEE
Q 043707          258 TLKVWRISDC---KCLESINAHD--DAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALA  331 (347)
Q Consensus       258 ~i~vwdl~~~---~~~~~~~~h~--~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~  331 (347)
                      .|.++.+...   ...+.|++|.  +.-..+.|+||| +|++|..||.+.+||.++..      ++..+.+|..++..+.
T Consensus       408 ~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k------l~~~lkah~~~ci~v~  481 (503)
T KOG0282|consen  408 YIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK------LVSKLKAHDQPCIGVD  481 (503)
T ss_pred             eEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh------hhhccccCCcceEEEE
Confidence            5555544221   1223455664  345667899998 99999999999999998543      6888999999999999


Q ss_pred             EccCC-CEEEEecCCCC
Q 043707          332 VNQES-AVVYCGSSDGL  347 (347)
Q Consensus       332 ~~p~~-~~l~sgs~DG~  347 (347)
                      |+|.. ..||+|+.||.
T Consensus       482 wHP~e~Skvat~~w~G~  498 (503)
T KOG0282|consen  482 WHPVEPSKVATCGWDGL  498 (503)
T ss_pred             ecCCCcceeEecccCce
Confidence            99966 88999999983

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=1.1e-22  Score=163.83  Aligned_cols=201  Identities=16%  Similarity=0.283  Sum_probs=160.9

Q ss_pred             ceeEeeeeccccEEEEeec----CCEEEEecCCCcEEEEeCCC----cceeeecCCCCeeEEEEeCC--CCEEEEEeCCC
Q 043707          114 GLIGSIVRKEGHIYSLAAS----GDLLYTGSDSKNIRVWKNLK----EFSGFKSNSGLVKAIIITGD--SNKIFTGHQDG  183 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~~----~~~l~tg~~dg~I~vwd~~~----~~~~~~~h~~~V~~l~~sp~--~~~l~s~~~Dg  183 (347)
                      .++.+|.+|.|+|+.+.|-    |.+||+++.||+|.||....    ....+..|...|++++|.|.  |-.|++++.||
T Consensus        47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG  126 (299)
T KOG1332|consen   47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDG  126 (299)
T ss_pred             eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCC
Confidence            5688999999999999973    78999999999999998543    35567789999999999994  56799999999


Q ss_pred             cEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC---C-----------CE
Q 043707          184 KIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE---Q-----------GL  249 (347)
Q Consensus       184 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~---~-----------~~  249 (347)
                      .|.|.+.+....-....                             +...|.-.|++++|.|.   |           +.
T Consensus       127 ~vsvl~~~~~g~w~t~k-----------------------------i~~aH~~GvnsVswapa~~~g~~~~~~~~~~~kr  177 (299)
T KOG1332|consen  127 KVSVLTYDSSGGWTTSK-----------------------------IVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKR  177 (299)
T ss_pred             cEEEEEEcCCCCccchh-----------------------------hhhccccccceeeecCcCCCccccccCcccccce
Confidence            99999988762111111                             11248899999999985   4           56


Q ss_pred             EEEEeCCCcEEEEeCCCCE--EEEEEecCCCcEEEEEeCCCC-----EEEEEeCCCcEEEEEcccCCccceeeehhhhhc
Q 043707          250 LYSGSWDKTLKVWRISDCK--CLESINAHDDAINSVVAGFDS-----LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLK  322 (347)
Q Consensus       250 l~s~s~dg~i~vwdl~~~~--~~~~~~~h~~~v~~i~~~~~~-----~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~  322 (347)
                      |++|+.|..|+||+...++  .-.+|.+|.+.|..++|.|.-     .||+++.||+|.||..+.+...   .....+..
T Consensus       178 lvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~---wk~tll~~  254 (299)
T KOG1332|consen  178 LVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP---WKKTLLEE  254 (299)
T ss_pred             eeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc---cccccccc
Confidence            9999999999999998753  345589999999999999862     8999999999999988733221   22233344


Q ss_pred             cCCcEEEEEEccCCCEEEEecCCC
Q 043707          323 QENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       323 h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      ....+..+.|+..|..|+.++.|.
T Consensus       255 f~~~~w~vSWS~sGn~LaVs~GdN  278 (299)
T KOG1332|consen  255 FPDVVWRVSWSLSGNILAVSGGDN  278 (299)
T ss_pred             CCcceEEEEEeccccEEEEecCCc
Confidence            567899999999999999988774

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.90  E-value=2.1e-22  Score=191.42  Aligned_cols=198  Identities=21%  Similarity=0.290  Sum_probs=159.2

Q ss_pred             cceeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC--------------------CcceeeecCCCCeeEEEEe
Q 043707          113 NGLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL--------------------KEFSGFKSNSGLVKAIIIT  170 (347)
Q Consensus       113 ~~~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~--------------------~~~~~~~~h~~~V~~l~~s  170 (347)
                      .+++.+...|.+.|.|+.|  +|++||+|++|+.|.||+..                    +.+..+.+|...|.+++|+
T Consensus        59 ~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws  138 (942)
T KOG0973|consen   59 PKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS  138 (942)
T ss_pred             chhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence            4567888899999999986  58899999999999999733                    1345678999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEE
Q 043707          171 GDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLL  250 (347)
Q Consensus       171 p~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l  250 (347)
                      |++.+|++++.|++|.||+..+.+.....                                .+|...|..+.|.|-|++|
T Consensus       139 p~~~~lvS~s~DnsViiwn~~tF~~~~vl--------------------------------~~H~s~VKGvs~DP~Gky~  186 (942)
T KOG0973|consen  139 PDDSLLVSVSLDNSVIIWNAKTFELLKVL--------------------------------RGHQSLVKGVSWDPIGKYF  186 (942)
T ss_pred             CCccEEEEecccceEEEEccccceeeeee--------------------------------ecccccccceEECCccCee
Confidence            99999999999999999999887432222                                2599999999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCE----------------------------------------------------EEEEEecCCC
Q 043707          251 YSGSWDKTLKVWRISDCK----------------------------------------------------CLESINAHDD  278 (347)
Q Consensus       251 ~s~s~dg~i~vwdl~~~~----------------------------------------------------~~~~~~~h~~  278 (347)
                      ++-+.|++|+||++.+..                                                    .-..|-+|.+
T Consensus       187 ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~  266 (942)
T KOG0973|consen  187 ASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSA  266 (942)
T ss_pred             eeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCC
Confidence            999999999999864321                                                    2223457999


Q ss_pred             cEEEEEeCCC------C------------EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEE
Q 043707          279 AINSVVAGFD------S------------LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVY  340 (347)
Q Consensus       279 ~v~~i~~~~~------~------------~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~  340 (347)
                      ++.++.|+|.      .            .+|+|+.|++|.||......   .  +.....-....|.+++|+|||..|+
T Consensus       267 p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R---P--l~vi~~lf~~SI~DmsWspdG~~Lf  341 (942)
T KOG0973|consen  267 PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR---P--LFVIHNLFNKSIVDMSWSPDGFSLF  341 (942)
T ss_pred             ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC---c--hhhhhhhhcCceeeeeEcCCCCeEE
Confidence            9999999871      1            46789999999999985322   1  2222222366899999999999999


Q ss_pred             EecCCCC
Q 043707          341 CGSSDGL  347 (347)
Q Consensus       341 sgs~DG~  347 (347)
                      +||.||+
T Consensus       342 acS~DGt  348 (942)
T KOG0973|consen  342 ACSLDGT  348 (942)
T ss_pred             EEecCCe
Confidence            9999995

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.90  E-value=6.9e-23  Score=170.14  Aligned_cols=202  Identities=19%  Similarity=0.318  Sum_probs=162.6

Q ss_pred             eeEeeeeccccEEEEeecC--CEEEEecCCCcEEEEeCCCc-----ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 043707          115 LIGSIVRKEGHIYSLAASG--DLLYTGSDSKNIRVWKNLKE-----FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI  187 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~~~--~~l~tg~~dg~I~vwd~~~~-----~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~v  187 (347)
                      +|+++-.|..+|.++.|.+  .+|++|+.|++|+++|..+.     .+.|+ ...+|.+|.|+|.|.+|+.|....++|+
T Consensus       164 vIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefllvgTdHp~~rl  242 (430)
T KOG0640|consen  164 VIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLLVGTDHPTLRL  242 (430)
T ss_pred             eEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEEEecCCCceeE
Confidence            7888999999999999864  59999999999999997644     23333 3468999999999999999999999999


Q ss_pred             EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 043707          188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC  267 (347)
Q Consensus       188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~  267 (347)
                      ||+++-+.-....    |.                         -+|.+.|+++.+++.+++.++++.||.|++||--.+
T Consensus       243 Ydv~T~Qcfvsan----Pd-------------------------~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~  293 (430)
T KOG0640|consen  243 YDVNTYQCFVSAN----PD-------------------------DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSN  293 (430)
T ss_pred             EeccceeEeeecC----cc-------------------------cccccceeEEEecCCccEEEEeccCCcEEeeccccH
Confidence            9999875322111    11                         149999999999999999999999999999999999


Q ss_pred             EEEEEEe-cCCC-cEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCc-----------------------cce--------
Q 043707          268 KCLESIN-AHDD-AINSVVAGFDS-LVFTGSADGTVKVWRRELQGK-----------------------GTK--------  313 (347)
Q Consensus       268 ~~~~~~~-~h~~-~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~-----------------------~~~--------  313 (347)
                      +|+.++. +|.+ .|.+..|..++ ++++.+.|..|++|.+.++.-                       .+.        
T Consensus       294 rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEa  373 (430)
T KOG0640|consen  294 RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEA  373 (430)
T ss_pred             HHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccc
Confidence            9999884 6754 58888999888 999999999999999875321                       000        


Q ss_pred             ------------eeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          314 ------------HFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       314 ------------~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                                  ........+|.+.+..+.-+|.+..+++||.|-
T Consensus       374 s~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~  418 (430)
T KOG0640|consen  374 SNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF  418 (430)
T ss_pred             cCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence                        001112347899999999999999999999873

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=4.9e-24  Score=194.26  Aligned_cols=192  Identities=24%  Similarity=0.351  Sum_probs=166.7

Q ss_pred             eEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecC
Q 043707          116 IGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVS  191 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~  191 (347)
                      +..+.+|+..|-++.++  ..+|++|+.+|+|++||+.  +.++++.+|...+..+.|+|-+.++++|+.|+.+++||.+
T Consensus        63 i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~R  142 (825)
T KOG0267|consen   63 ITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIR  142 (825)
T ss_pred             hheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhh
Confidence            44588999999999976  5699999999999999976  4578899999999999999999999999999999999998


Q ss_pred             CCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEE
Q 043707          192 RKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE  271 (347)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~  271 (347)
                      ...+.....                                +|...|.++.|+|+|.++++|+.|.+++|||+..|+.+.
T Consensus       143 k~Gc~~~~~--------------------------------s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~  190 (825)
T KOG0267|consen  143 KKGCSHTYK--------------------------------SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSK  190 (825)
T ss_pred             ccCceeeec--------------------------------CCcceeEEEeecCCCceeeccCCcceeeeeccccccccc
Confidence            654332221                                488889999999999999999999999999999999999


Q ss_pred             EEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707          272 SINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       272 ~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                      .|+.|.+.+..+.|+|.. ++++|+.|++|++||+++-      ..+.........|.+++|+|++..+++|..+
T Consensus       191 ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf------e~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  191 EFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF------EVISSGKPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             ccccccccccccccCchhhhhccCCCCceeeeecccee------EEeeccCCccCCceeeeecCCceeeecCchh
Confidence            999999999999999987 8889999999999999832      2344444446789999999999999988654

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.90  E-value=1.4e-22  Score=167.27  Aligned_cols=196  Identities=16%  Similarity=0.252  Sum_probs=156.6

Q ss_pred             eeeeccccEEEEeec---CCEEEEecCCCcEEEEeCCCc-----------------ceeeecCCCCeeEEEEeC-CCCEE
Q 043707          118 SIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLKE-----------------FSGFKSNSGLVKAIIITG-DSNKI  176 (347)
Q Consensus       118 ~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~~~-----------------~~~~~~h~~~V~~l~~sp-~~~~l  176 (347)
                      ....|.|.|.++..+   |+++++|+.||.|.|||+.+.                 ...-.+|.-.|..+.|-| |...|
T Consensus        38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF  117 (397)
T KOG4283|consen   38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF  117 (397)
T ss_pred             eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence            345688999988864   889999999999999995421                 111245788999999999 76799


Q ss_pred             EEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC---CCEEEEE
Q 043707          177 FTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE---QGLLYSG  253 (347)
Q Consensus       177 ~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~---~~~l~s~  253 (347)
                      .+++.|.+++|||..+-+.....                                 ...+.|..-+++|-   .-++++|
T Consensus       118 tssSFDhtlKVWDtnTlQ~a~~F---------------------------------~me~~VYshamSp~a~sHcLiA~g  164 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNTLQEAVDF---------------------------------KMEGKVYSHAMSPMAMSHCLIAAG  164 (397)
T ss_pred             ecccccceEEEeecccceeeEEe---------------------------------ecCceeehhhcChhhhcceEEEEe
Confidence            99999999999999887643322                                 24566777777773   4578888


Q ss_pred             eCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCc--------c-ceeeehhhhhc
Q 043707          254 SWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGK--------G-TKHFLAQVLLK  322 (347)
Q Consensus       254 s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~--------~-~~~~~~~~~~~  322 (347)
                      ..|-.|++.|+..|.+-+++.+|.+.|.++.|+|..  .|++|+.||.|++||++....        . ......+.-.+
T Consensus       165 tr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~a  244 (397)
T KOG4283|consen  165 TRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTA  244 (397)
T ss_pred             cCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccc
Confidence            899999999999999999999999999999999986  889999999999999984311        1 11122334567


Q ss_pred             cCCcEEEEEEccCCCEEEEecCCC
Q 043707          323 QENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       323 h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      |.+.|..++|..++.++++++.|.
T Consensus       245 h~gkvngla~tSd~~~l~~~gtd~  268 (397)
T KOG4283|consen  245 HYGKVNGLAWTSDARYLASCGTDD  268 (397)
T ss_pred             ccceeeeeeecccchhhhhccCcc
Confidence            899999999999999999998874

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.90  E-value=1.8e-22  Score=191.92  Aligned_cols=200  Identities=20%  Similarity=0.292  Sum_probs=154.1

Q ss_pred             ccEEEEe--ecCCEEEEec--CCCcEEEEeC--------------CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcE
Q 043707          124 GHIYSLA--ASGDLLYTGS--DSKNIRVWKN--------------LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKI  185 (347)
Q Consensus       124 ~~V~~l~--~~~~~l~tg~--~dg~I~vwd~--------------~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I  185 (347)
                      ..|++++  +++..++||+  .||.++||+.              .+.+.....|.+.|.|+.|+|||++||+|+.|+.|
T Consensus        14 ~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v   93 (942)
T KOG0973|consen   14 KSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLV   93 (942)
T ss_pred             eeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceE
Confidence            3566666  6788999999  9999999962              23355677899999999999999999999999999


Q ss_pred             EEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 043707          186 RIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS  265 (347)
Q Consensus       186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~  265 (347)
                      .||+......  ....           ....+...++-+ .....+.+|...|..++|+|++.+|++++.|++|.||+.+
T Consensus        94 ~iW~~~~~~~--~~~f-----------gs~g~~~~vE~w-k~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~  159 (942)
T KOG0973|consen   94 MIWERAEIGS--GTVF-----------GSTGGAKNVESW-KVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAK  159 (942)
T ss_pred             EEeeecccCC--cccc-----------ccccccccccee-eEEEEEecCCCccceeccCCCccEEEEecccceEEEEccc
Confidence            9999874100  0000           000001111111 1223445799999999999999999999999999999999


Q ss_pred             CCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhc------cCCcEEEEEEccCCCE
Q 043707          266 DCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLK------QENAITALAVNQESAV  338 (347)
Q Consensus       266 ~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~------h~~~V~~l~~~p~~~~  338 (347)
                      +++.+..+++|.+.|..+.|.|-| +||+-+.|++|+||++..-+      ..+.+.+      -..-+..+.|+|||.+
T Consensus       160 tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~------i~k~It~pf~~~~~~T~f~RlSWSPDG~~  233 (942)
T KOG0973|consen  160 TFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWG------IEKSITKPFEESPLTTFFLRLSWSPDGHH  233 (942)
T ss_pred             cceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccce------eeEeeccchhhCCCcceeeecccCCCcCe
Confidence            999999999999999999999988 99999999999999976422      2222222      2346889999999999


Q ss_pred             EEEec
Q 043707          339 VYCGS  343 (347)
Q Consensus       339 l~sgs  343 (347)
                      |++.-
T Consensus       234 las~n  238 (942)
T KOG0973|consen  234 LASPN  238 (942)
T ss_pred             ecchh
Confidence            99863

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.90  E-value=3e-23  Score=173.25  Aligned_cols=216  Identities=20%  Similarity=0.310  Sum_probs=171.8

Q ss_pred             CCCCCCCCCCCCCccccccc--ce-------------------eEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeC
Q 043707           94 KSPWLMPPYSPNENLLSSCN--GL-------------------IGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKN  150 (347)
Q Consensus        94 ~~~~~~~~~~p~~~~~~~~~--~~-------------------i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~  150 (347)
                      ++..-...|+|+|+++.+..  |.                   ...+..|+..|.|+.++  .+.|++|+.||.|+||.+
T Consensus       213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri  292 (508)
T KOG0275|consen  213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI  292 (508)
T ss_pred             ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence            33444557999998875432  21                   22355688899999986  459999999999999984


Q ss_pred             --CCcceeee-cCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecc
Q 043707          151 --LKEFSGFK-SNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNR  227 (347)
Q Consensus       151 --~~~~~~~~-~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (347)
                        ..+++.|. .|+..|+|+.|+.|+..+++++.|.++|+--+++++.....+                           
T Consensus       293 ~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr---------------------------  345 (508)
T KOG0275|consen  293 ETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR---------------------------  345 (508)
T ss_pred             ecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc---------------------------
Confidence              56677776 899999999999999999999999999999999987654443                           


Q ss_pred             eeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecC--CC---------------------------
Q 043707          228 NVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH--DD---------------------------  278 (347)
Q Consensus       228 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h--~~---------------------------  278 (347)
                           +|...|+...|.++|+.+++++.||+|+||+.++.+|+.+|+..  +-                           
T Consensus       346 -----GHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~im  420 (508)
T KOG0275|consen  346 -----GHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIM  420 (508)
T ss_pred             -----CccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEE
Confidence                 69999999999999999999999999999999988777665421  11                           


Q ss_pred             ------------------cEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEE
Q 043707          279 ------------------AINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVV  339 (347)
Q Consensus       279 ------------------~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l  339 (347)
                                        ...+...+|.| ++++.++|+.++.|....++      +..++..|+..|..++-+|..+.|
T Consensus       421 n~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~------LE~tl~VhEkdvIGl~HHPHqNll  494 (508)
T KOG0275|consen  421 NMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGK------LERTLPVHEKDVIGLTHHPHQNLL  494 (508)
T ss_pred             eccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCc------eeeeeecccccccccccCcccchh
Confidence                              22233456665 67777788888777776443      567788899999999999999999


Q ss_pred             EEecCCCC
Q 043707          340 YCGSSDGL  347 (347)
Q Consensus       340 ~sgs~DG~  347 (347)
                      ++-++||+
T Consensus       495 AsYsEDgl  502 (508)
T KOG0275|consen  495 ASYSEDGL  502 (508)
T ss_pred             hhhcccch
Confidence            99999985

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.8e-21  Score=155.19  Aligned_cols=201  Identities=17%  Similarity=0.214  Sum_probs=143.7

Q ss_pred             eeeccccEEEEeec------CCEEEEe-cCCCcEEEEe--CCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707          119 IVRKEGHIYSLAAS------GDLLYTG-SDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK  189 (347)
Q Consensus       119 l~~h~~~V~~l~~~------~~~l~tg-~~dg~I~vwd--~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd  189 (347)
                      +..|.+.|..+++-      +.+|+++ ..|.+|++-|  ..+.++.+.+|++.|.++- +=++-+|++|++|.+||+||
T Consensus       132 ~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwd  210 (350)
T KOG0641|consen  132 FNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWD  210 (350)
T ss_pred             eeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEe
Confidence            33455555555541      2244443 2344444444  2344566677887777662 22455899999999999999


Q ss_pred             cCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEE
Q 043707          190 VSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC  269 (347)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~  269 (347)
                      ++-..............                         --....|..++..|.|++|++|-.|....+||++.++.
T Consensus       211 lrv~~~v~~l~~~~~~~-------------------------glessavaav~vdpsgrll~sg~~dssc~lydirg~r~  265 (350)
T KOG0641|consen  211 LRVNSCVNTLDNDFHDG-------------------------GLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM  265 (350)
T ss_pred             eeccceeeeccCcccCC-------------------------CcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce
Confidence            97654322111100000                         00235799999999999999999999999999999999


Q ss_pred             EEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          270 LESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       270 ~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      ++.|..|...|.|+.|+|.. ++++++.|..|++-|++  +.-....+......|...+..+.|+|+.--+++.+.|.+
T Consensus       266 iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq--gdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt  342 (350)
T KOG0641|consen  266 IQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ--GDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKT  342 (350)
T ss_pred             eeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc--cchhhcCceEEEEeccCceEEEEecCccceeeeccCcce
Confidence            99999999999999999986 99999999999999997  322233344455678889999999999988899988864

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.90  E-value=2.7e-22  Score=166.62  Aligned_cols=196  Identities=16%  Similarity=0.310  Sum_probs=159.5

Q ss_pred             eEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCC--------------------cceeeecCCCCeeEEEEeCCC
Q 043707          116 IGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK--------------------EFSGFKSNSGLVKAIIITGDS  173 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~--------------------~~~~~~~h~~~V~~l~~sp~~  173 (347)
                      -..+..|++++.+-.+  +|.+++||+.|..|+|.|..+                    .++++..|...|.++.|+|..
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre  184 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE  184 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence            3456679988777654  688999999999999998531                    145677899999999999999


Q ss_pred             CEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEE
Q 043707          174 NKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSG  253 (347)
Q Consensus       174 ~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~  253 (347)
                      ..|++|+.|++|+++|+..........+                              +....+|.+++|+|.|.+|+.|
T Consensus       185 ~ILiS~srD~tvKlFDfsK~saKrA~K~------------------------------~qd~~~vrsiSfHPsGefllvg  234 (430)
T KOG0640|consen  185 TILISGSRDNTVKLFDFSKTSAKRAFKV------------------------------FQDTEPVRSISFHPSGEFLLVG  234 (430)
T ss_pred             heEEeccCCCeEEEEecccHHHHHHHHH------------------------------hhccceeeeEeecCCCceEEEe
Confidence            9999999999999999976532211111                              1255789999999999999999


Q ss_pred             eCCCcEEEEeCCCCEEEEEE---ecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhh-hcc-CCcE
Q 043707          254 SWDKTLKVWRISDCKCLESI---NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVL-LKQ-ENAI  327 (347)
Q Consensus       254 s~dg~i~vwdl~~~~~~~~~---~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~-~~h-~~~V  327 (347)
                      ..-.++++||+.+.+|...-   ..|.+.|+++.+++.+ +.++++.||.|++||--.. +     ++.++ .+| ...|
T Consensus       235 TdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~-r-----Cv~t~~~AH~gsev  308 (430)
T KOG0640|consen  235 TDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSN-R-----CVRTIGNAHGGSEV  308 (430)
T ss_pred             cCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccH-H-----HHHHHHhhcCCcee
Confidence            99999999999999987654   3688999999999988 8889999999999997432 2     45444 456 4479


Q ss_pred             EEEEEccCCCEEEEecCCCC
Q 043707          328 TALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       328 ~~l~~~p~~~~l~sgs~DG~  347 (347)
                      .+..|..++++|++.|.|.+
T Consensus       309 cSa~Ftkn~kyiLsSG~DS~  328 (430)
T KOG0640|consen  309 CSAVFTKNGKYILSSGKDST  328 (430)
T ss_pred             eeEEEccCCeEEeecCCcce
Confidence            99999999999999999863

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.90  E-value=1.6e-22  Score=183.64  Aligned_cols=189  Identities=22%  Similarity=0.341  Sum_probs=161.7

Q ss_pred             cceeEeeeeccccEEEEeec-CCEEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecC
Q 043707          113 NGLIGSIVRKEGHIYSLAAS-GDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVS  191 (347)
Q Consensus       113 ~~~i~~l~~h~~~V~~l~~~-~~~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~  191 (347)
                      ..++.+|++|+..|+|++.. ...+++|+.|.++++|...+....+++|+..|++++.-|++ .++||+.|.+|++|.-.
T Consensus        91 ~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~  169 (745)
T KOG0301|consen   91 AEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG  169 (745)
T ss_pred             CCchhhhhccccceeeeecCCcCceEecccccceEEecchhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCC
Confidence            34788999999999999964 33589999999999999998888899999999999999987 89999999999999874


Q ss_pred             CCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEE
Q 043707          192 RKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE  271 (347)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~  271 (347)
                      +..  .                                .+.+|.+.|+.+++-+++ .+++++.||.|+.|++ +++++.
T Consensus       170 ~~l--~--------------------------------tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~  213 (745)
T KOG0301|consen  170 TLL--K--------------------------------TFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLL  213 (745)
T ss_pred             chh--h--------------------------------hhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceee
Confidence            321  1                                112599999999998864 5789999999999999 899999


Q ss_pred             EEecCCCcEEEEE-eCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          272 SINAHDDAINSVV-AGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       272 ~~~~h~~~v~~i~-~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      .+.+|...|.++. ..+++.++++++|+++++|+..        .+.+.+.-....|+++++-++|. |++|++||.
T Consensus       214 ~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--------e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~  281 (745)
T KOG0301|consen  214 EMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--------ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGR  281 (745)
T ss_pred             eeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--------ceEEEEecCccceEEEEEeeCCC-EEEeccCce
Confidence            9999999999998 6667899999999999999986        25666666677899999999887 567777874

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.89  E-value=7.6e-22  Score=163.37  Aligned_cols=186  Identities=23%  Similarity=0.321  Sum_probs=135.7

Q ss_pred             cEEEEeec---CCEEEEecCCCcEEEEeCCCc----ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCce
Q 043707          125 HIYSLAAS---GDLLYTGSDSKNIRVWKNLKE----FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSV  197 (347)
Q Consensus       125 ~V~~l~~~---~~~l~tg~~dg~I~vwd~~~~----~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~  197 (347)
                      .|.+|+|+   ..++++|+.||+||+|++...    -+....|.++|.+++|+.+|..+++|+.|+.+++||+.+++...
T Consensus        29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~  108 (347)
T KOG0647|consen   29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQ  108 (347)
T ss_pred             chheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeee
Confidence            44456655   347789999999999996542    24456789999999999999999999999999999999986432


Q ss_pred             eeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCC--EEEEEeCCCcEEEEeCCCCEEEEEEec
Q 043707          198 HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQG--LLYSGSWDKTLKVWRISDCKCLESINA  275 (347)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~--~l~s~s~dg~i~vwdl~~~~~~~~~~~  275 (347)
                      ..                                 .|..+|.++.|-+...  +|++|++|++|+.||+|...++.++.-
T Consensus       109 v~---------------------------------~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L  155 (347)
T KOG0647|consen  109 VA---------------------------------AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL  155 (347)
T ss_pred             ee---------------------------------ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec
Confidence            22                                 3999999999988655  899999999999999998776655542


Q ss_pred             CC-----------------------------------------CcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccce
Q 043707          276 HD-----------------------------------------DAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTK  313 (347)
Q Consensus       276 h~-----------------------------------------~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~  313 (347)
                      .+                                         -.+.||++..|. ..+.|+-+|.+.|..+..... . 
T Consensus       156 PeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~-  233 (347)
T KOG0647|consen  156 PERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-K-  233 (347)
T ss_pred             cceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-c-
Confidence            11                                         124455554443 446666666666666653211 0 


Q ss_pred             eeehhhhhccC---------CcEEEEEEccCCCEEEEecCCCC
Q 043707          314 HFLAQVLLKQE---------NAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       314 ~~~~~~~~~h~---------~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                        .-..+..|.         .+|++|+|+|....|+++|.||+
T Consensus       234 --~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGt  274 (347)
T KOG0647|consen  234 --DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGT  274 (347)
T ss_pred             --CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCce
Confidence              011222232         36889999999999999999996

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=9.1e-22  Score=163.82  Aligned_cols=194  Identities=22%  Similarity=0.304  Sum_probs=158.0

Q ss_pred             eEeeeeccccEEEEeecCCEEEEecCCCcEEEEeCCC--cceeeecCCCCeeEEEEeCCCC--EEEEEeCCCcEEEEecC
Q 043707          116 IGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIITGDSN--KIFTGHQDGKIRIWKVS  191 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~~--~~~~~~~h~~~V~~l~~sp~~~--~l~s~~~Dg~I~vwd~~  191 (347)
                      +..+..|.+.|++++.++.++++|+.|-+|+|||..+  .+..+..|.+.|+++.|.+.-.  .|++|+.||.|.+|++.
T Consensus        36 lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~  115 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG  115 (362)
T ss_pred             cccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence            5566789999999999999999999999999999764  4667888999999999998654  89999999999999997


Q ss_pred             CCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEE
Q 043707          192 RKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE  271 (347)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~  271 (347)
                      .-......                                ..|...|+.++.+|.+++-++.+.|+.++.|++-+|+.-.
T Consensus       116 ~W~~~~sl--------------------------------K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~  163 (362)
T KOG0294|consen  116 SWELLKSL--------------------------------KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF  163 (362)
T ss_pred             CeEEeeee--------------------------------cccccccceeEecCCCceEEEEcCCceeeeehhhcCccce
Confidence            65322111                                1488899999999999999999999999999997664211


Q ss_pred             EEe-----------c----------------------------CCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccc
Q 043707          272 SIN-----------A----------------------------HDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGT  312 (347)
Q Consensus       272 ~~~-----------~----------------------------h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~  312 (347)
                      .++           .                            ....+.++.|...+.|++|+.|+.|++||...     
T Consensus       164 v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds-----  238 (362)
T KOG0294|consen  164 VLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDS-----  238 (362)
T ss_pred             eeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCC-----
Confidence            110           0                            11235666776667999999999999999974     


Q ss_pred             eeeehhhhhccCCcEEEEEE--ccCCCEEEEecCCCC
Q 043707          313 KHFLAQVLLKQENAITALAV--NQESAVVYCGSSDGL  347 (347)
Q Consensus       313 ~~~~~~~~~~h~~~V~~l~~--~p~~~~l~sgs~DG~  347 (347)
                       ..+...+.+|...|.++.+  .|++.+|+++|+||.
T Consensus       239 -~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~  274 (362)
T KOG0294|consen  239 -DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGF  274 (362)
T ss_pred             -CccceeeecchhheeeeEEEecCCceEEEEeccCce
Confidence             2378888999999999985  467799999999994

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.89  E-value=1.4e-21  Score=179.02  Aligned_cols=205  Identities=20%  Similarity=0.356  Sum_probs=166.3

Q ss_pred             eeEeeeeccccEEEE--eecCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEec
Q 043707          115 LIGSIVRKEGHIYSL--AASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKV  190 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l--~~~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~  190 (347)
                      .++++...  .+.|.  .+.++++++|...|.+.+||..  ..+...+.|.++|+.++.+||+..+++|+.|.+|++||.
T Consensus       406 ciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf  483 (888)
T KOG0306|consen  406 CIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDF  483 (888)
T ss_pred             eeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeE
Confidence            44444332  34443  3567799999999999999954  557778899999999999999999999999999999998


Q ss_pred             CCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEE
Q 043707          191 SRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL  270 (347)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~  270 (347)
                      .-...        .|....         .++.+   .....+.-.+.|.|++++||+++|+++--|.+++||-+.+.+..
T Consensus       484 ~l~~~--------~~gt~~---------k~lsl---~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFf  543 (888)
T KOG0306|consen  484 KLVVS--------VPGTQK---------KVLSL---KHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFF  543 (888)
T ss_pred             EEEec--------cCcccc---------eeeee---ccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeee
Confidence            53221        000000         00000   11112235688999999999999999999999999999999999


Q ss_pred             EEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          271 ESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       271 ~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      .++-+|.-+|.|+..+||+ +++||+.|..|++|-++.+.      +...+.+|+..|.++.|.|+...+.+||.||.
T Consensus       544 lsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD------CHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~k  615 (888)
T KOG0306|consen  544 LSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD------CHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGK  615 (888)
T ss_pred             eeecccccceeEEeccCCcCeEEeccCCCceEEeccccch------hhhhhhcccCceeEEEEcccceeEEEecCcce
Confidence            9999999999999999998 99999999999999998654      68889999999999999999999999999973

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.89  E-value=4.2e-22  Score=171.08  Aligned_cols=226  Identities=23%  Similarity=0.321  Sum_probs=173.8

Q ss_pred             eeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEec
Q 043707          115 LIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKV  190 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~  190 (347)
                      ++.+|.+-.+.|++++++  ++.+++++.|+.+++|+..  +...++.+|++.|+++.|.-....+++|+.|.+|++||+
T Consensus       211 ~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl  290 (459)
T KOG0288|consen  211 LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDL  290 (459)
T ss_pred             hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhh
Confidence            577777778889998875  7799999999999999865  567889999999999999887667999999999999999


Q ss_pred             CCCCCceeeeecccc-----cccceEEeccCCC-eEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 043707          191 SRKNPSVHKRVGSLP-----TFKDYVKSSVNPK-NYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI  264 (347)
Q Consensus       191 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl  264 (347)
                      ....+.....+....     ....++....+.+ .+++.+.......+.-.+.|+++..++++..|++++.|.++.+.|+
T Consensus       291 ~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDl  370 (459)
T KOG0288|consen  291 QKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDL  370 (459)
T ss_pred             hhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeec
Confidence            886543332222111     0122233333333 3344455555566666679999999999999999999999999999


Q ss_pred             CCCEEEEEEecC----CCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccC--CcEEEEEEccCCC
Q 043707          265 SDCKCLESINAH----DDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQE--NAITALAVNQESA  337 (347)
Q Consensus       265 ~~~~~~~~~~~h----~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~--~~V~~l~~~p~~~  337 (347)
                      ++.+....+.+.    ....+.+.|+|++ |+++|+.||.|+||++.+++      +...+....  ..|++++|+|.|.
T Consensus       371 Rt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgK------lE~~l~~s~s~~aI~s~~W~~sG~  444 (459)
T KOG0288|consen  371 RTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGK------LEKVLSLSTSNAAITSLSWNPSGS  444 (459)
T ss_pred             ccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCce------EEEEeccCCCCcceEEEEEcCCCc
Confidence            999888777542    2237889999998 99999999999999998554      333333332  2699999999999


Q ss_pred             EEEEecCCC
Q 043707          338 VVYCGSSDG  346 (347)
Q Consensus       338 ~l~sgs~DG  346 (347)
                      .|++++.++
T Consensus       445 ~Llsadk~~  453 (459)
T KOG0288|consen  445 GLLSADKQK  453 (459)
T ss_pred             hhhcccCCc
Confidence            999998875

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=1.5e-20  Score=156.91  Aligned_cols=207  Identities=17%  Similarity=0.207  Sum_probs=148.8

Q ss_pred             cCCEEEEecC--CCcEEEEeC--CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccc--
Q 043707          132 SGDLLYTGSD--SKNIRVWKN--LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLP--  205 (347)
Q Consensus       132 ~~~~l~tg~~--dg~I~vwd~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~--  205 (347)
                      ....++.++.  |.+||..++  .+.++-|.+|...|..|+.+|-+..+++++.|++||+||++..+..........|  
T Consensus        67 ~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~  146 (311)
T KOG1446|consen   67 HSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIA  146 (311)
T ss_pred             CCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcce
Confidence            3444444443  556666663  3457778999999999999998889999999999999999977765444433322  


Q ss_pred             ---cccceEEeccCCC--eEEEEeecce----eeee--ecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEe
Q 043707          206 ---TFKDYVKSSVNPK--NYVEVRRNRN----VLKI--RHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN  274 (347)
Q Consensus       206 ---~~~~~~~~~~~~~--~~~~~~~~~~----~~~~--~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~  274 (347)
                         ....+++......  .+++++.-..    ...+  .-....+.|.|+|+|++|+.+...+.+++.|.-+|..+.++.
T Consensus       147 AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs  226 (311)
T KOG1446|consen  147 AFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS  226 (311)
T ss_pred             eECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe
Confidence               1112222222222  2223322211    1111  235678899999999999999999999999999999999998


Q ss_pred             cCCCcE---EEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhc-cCCcEEEEEEccCCCEEEEecC
Q 043707          275 AHDDAI---NSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLK-QENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       275 ~h~~~v---~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~-h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      .+...-   -...|.||+ ++++|+.||+|.+|+++++.+      +..+.+ +..++.++.|+|...+++++++
T Consensus       227 ~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~------v~~~~~~~~~~~~~~~fnP~~~mf~sa~s  295 (311)
T KOG1446|consen  227 GYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKK------VAVLRGPNGGPVSCVRFNPRYAMFVSASS  295 (311)
T ss_pred             eccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcE------eeEecCCCCCCccccccCCceeeeeecCc
Confidence            775432   456789998 888888999999999986653      444444 6889999999999888888875

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.88  E-value=3.2e-21  Score=166.67  Aligned_cols=184  Identities=22%  Similarity=0.299  Sum_probs=159.6

Q ss_pred             cEEEEeecC--CEEEEecCCCcEEEEeC--CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeee
Q 043707          125 HIYSLAASG--DLLYTGSDSKNIRVWKN--LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKR  200 (347)
Q Consensus       125 ~V~~l~~~~--~~l~tg~~dg~I~vwd~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~  200 (347)
                      .|+++...+  ..++||+.|..+.++|.  .+.+..+++|...|..+.++|+...+++++.|..|+||.+........  
T Consensus       221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~--  298 (506)
T KOG0289|consen  221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS--  298 (506)
T ss_pred             CeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc--
Confidence            477777654  79999999999999994  466889999999999999999999999999999999999876542211  


Q ss_pred             ecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEec--CCC
Q 043707          201 VGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA--HDD  278 (347)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~--h~~  278 (347)
                                                    ...|..+|+.+..+|.|.||++++.|+++.+.|++++.++.....  .+-
T Consensus       299 ------------------------------~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v  348 (506)
T KOG0289|consen  299 ------------------------------SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDV  348 (506)
T ss_pred             ------------------------------cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccc
Confidence                                          124999999999999999999999999999999999998877653  234


Q ss_pred             cEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          279 AINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       279 ~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      .+++.+|+||| +|.+|..|+.|+|||+..+.      ....+.+|.++|+.|+|+.+|-+|++++.||
T Consensus       349 ~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~------~~a~Fpght~~vk~i~FsENGY~Lat~add~  411 (506)
T KOG0289|consen  349 EYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT------NVAKFPGHTGPVKAISFSENGYWLATAADDG  411 (506)
T ss_pred             eeEEeeEcCCceEEeccCCCceEEEEEcCCcc------ccccCCCCCCceeEEEeccCceEEEEEecCC
Confidence            58999999999 77789999999999998543      4777889999999999999999999999997

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=5.2e-22  Score=165.49  Aligned_cols=228  Identities=19%  Similarity=0.265  Sum_probs=173.9

Q ss_pred             ccceeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeC--CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 043707          112 CNGLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKN--LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI  187 (347)
Q Consensus       112 ~~~~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~v  187 (347)
                      ...+++.+.+|++.|+.++.+  ..++.+++.|.+.+||.+  ..++..+.+|.+.|++|+|++.+.++++++.|++-.|
T Consensus       137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI  216 (481)
T KOG0300|consen  137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI  216 (481)
T ss_pred             eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence            345788889999999999865  348999999999999974  5778999999999999999999999999999999999


Q ss_pred             EecCCCCCcee----------eeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCC
Q 043707          188 WKVSRKNPSVH----------KRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDK  257 (347)
Q Consensus       188 wd~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg  257 (347)
                      |...-.-..+.          ....................  -..-+-....+.+|...|.+..|-..+..++++++|.
T Consensus       217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD--~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDR  294 (481)
T KOG0300|consen  217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSD--GHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDR  294 (481)
T ss_pred             HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccC--CceeeeeeeeeeccccceEehhhhcCcceeeeeeccc
Confidence            98322111110          00000000000000000000  0001112233457999999999999999999999999


Q ss_pred             cEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCC
Q 043707          258 TLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQES  336 (347)
Q Consensus       258 ~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~  336 (347)
                      +..+||+++++.+..+.+|+...+.+.-+|.. ++++++.|.+.++||.+.     ....+..+.+|...|+++.|.-+ 
T Consensus       295 TAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe-----aI~sV~VFQGHtdtVTS~vF~~d-  368 (481)
T KOG0300|consen  295 TANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE-----AIQSVAVFQGHTDTVTSVVFNTD-  368 (481)
T ss_pred             cceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchh-----hcceeeeecccccceeEEEEecC-
Confidence            99999999999999999999999999999886 888999999999999983     22367788999999999999876 


Q ss_pred             CEEEEecCCCC
Q 043707          337 AVVYCGSSDGL  347 (347)
Q Consensus       337 ~~l~sgs~DG~  347 (347)
                      ..+++|+.|.+
T Consensus       369 d~vVSgSDDrT  379 (481)
T KOG0300|consen  369 DRVVSGSDDRT  379 (481)
T ss_pred             CceeecCCCce
Confidence            55788998864

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.88  E-value=3.8e-21  Score=179.78  Aligned_cols=184  Identities=27%  Similarity=0.468  Sum_probs=160.5

Q ss_pred             ccccEEEEeecCCEEEEecCCCcEEEEeCCCc--cee-eecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCcee
Q 043707          122 KEGHIYSLAASGDLLYTGSDSKNIRVWKNLKE--FSG-FKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVH  198 (347)
Q Consensus       122 h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~~~--~~~-~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~  198 (347)
                      |...+.+..+..+++++++.|.+|++||....  +.. +.+|.+.|+++++...+.++++|+.|.+++|||..++.....
T Consensus       207 ~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~  286 (537)
T KOG0274|consen  207 DDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHS  286 (537)
T ss_pred             CcchhhhheeecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEE
Confidence            45578888899999999999999999995533  444 889999999999987677999999999999999998875433


Q ss_pred             eeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCC
Q 043707          199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDD  278 (347)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~  278 (347)
                      ..                                +|...|.|+...+  .++++|+.|.+|++|++.++.++..+.+|.+
T Consensus       287 l~--------------------------------gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~  332 (537)
T KOG0274|consen  287 LQ--------------------------------GHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTG  332 (537)
T ss_pred             ec--------------------------------CCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccc
Confidence            22                                5999999987754  6788899999999999999999999999999


Q ss_pred             cEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          279 AINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       279 ~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      +|.++..+ ..++++|+.|++|+|||+...      .++..+.+|...|+++.+.+. ..+++|+.|++
T Consensus       333 ~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~------~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~  393 (537)
T KOG0274|consen  333 PVNCVQLD-EPLLVSGSYDGTVKVWDPRTG------KCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTT  393 (537)
T ss_pred             cEEEEEec-CCEEEEEecCceEEEEEhhhc------eeeeeecCCcceEEEEEecCc-ceEEeeeeccc
Confidence            99999998 679999999999999999843      378999999999999988766 89999999974

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=4.4e-21  Score=159.76  Aligned_cols=197  Identities=18%  Similarity=0.303  Sum_probs=151.6

Q ss_pred             cceeEeeeeccccEEEEeecCC----EEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEE
Q 043707          113 NGLIGSIVRKEGHIYSLAASGD----LLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIR  186 (347)
Q Consensus       113 ~~~i~~l~~h~~~V~~l~~~~~----~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~  186 (347)
                      ...++.+..|.+.|+++.+.+.    .|++|++||.|.+|+..  ..+..+++|.+.|+.|+++|.++.-++.+.|+.++
T Consensus        73 ~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr  152 (362)
T KOG0294|consen   73 RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLR  152 (362)
T ss_pred             hhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceee
Confidence            4467888899999999998643    69999999999999955  66889999999999999999999999999999999


Q ss_pred             EEecCCCCCceeeeecccc-------cccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcE
Q 043707          187 IWKVSRKNPSVHKRVGSLP-------TFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTL  259 (347)
Q Consensus       187 vwd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i  259 (347)
                      +||+-.++......+...+       ....|+....+...++.+........+.....+.|+.|- ++..|++|..|+.|
T Consensus       153 ~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i  231 (362)
T KOG0294|consen  153 TWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWI  231 (362)
T ss_pred             eehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceE
Confidence            9999988765554444333       222333333333333333222222222334457777776 46788999999999


Q ss_pred             EEEeCCCCEEEEEEecCCCcEEEEEe--CCCC-EEEEEeCCCcEEEEEcccCCc
Q 043707          260 KVWRISDCKCLESINAHDDAINSVVA--GFDS-LVFTGSADGTVKVWRRELQGK  310 (347)
Q Consensus       260 ~vwdl~~~~~~~~~~~h~~~v~~i~~--~~~~-~l~s~~~dg~I~vwd~~~~~~  310 (347)
                      .+||..+..++..+.+|...|..+.+  .|++ +|++++.||.|+|||++...+
T Consensus       232 ~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k  285 (362)
T KOG0294|consen  232 SLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETK  285 (362)
T ss_pred             EEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccccc
Confidence            99999999999999999999999985  3444 999999999999999986644

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.1e-20  Score=157.59  Aligned_cols=224  Identities=17%  Similarity=0.150  Sum_probs=159.1

Q ss_pred             eeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCC----c----------------------------------c
Q 043707          115 LIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK----E----------------------------------F  154 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~----~----------------------------------~  154 (347)
                      .+..|++|.+.|++++|  +|++|+|++.|+.|+||++..    .                                  +
T Consensus        78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l  157 (420)
T KOG2096|consen   78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL  157 (420)
T ss_pred             hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence            36788999999999987  588999999999999997310    0                                  0


Q ss_pred             ee-----------------------eecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeee--------cc
Q 043707          155 SG-----------------------FKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRV--------GS  203 (347)
Q Consensus       155 ~~-----------------------~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~--------~~  203 (347)
                      ..                       -+.|.-.|..+-...++.+|++++.|.+|.+|+++ ++.......        ..
T Consensus       158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav  236 (420)
T KOG2096|consen  158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV  236 (420)
T ss_pred             EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence            00                       01234455566666778899999999999999998 443322221        12


Q ss_pred             cccccceEEeccCCCeEE-EEee---------cceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC-------
Q 043707          204 LPTFKDYVKSSVNPKNYV-EVRR---------NRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD-------  266 (347)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~-~~~~---------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~-------  266 (347)
                      .|...-+..+.+.+...+ +.--         .+...+.+|...|..++|+++...+++.+.||+++|||..-       
T Consensus       237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD  316 (420)
T KOG2096|consen  237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD  316 (420)
T ss_pred             CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence            233344444445444332 2211         11223458999999999999999999999999999999742       


Q ss_pred             CEEEEEE----ecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEe
Q 043707          267 CKCLESI----NAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCG  342 (347)
Q Consensus       267 ~~~~~~~----~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sg  342 (347)
                      .+.++..    .+-.+.-..++.+|.+.+++.+....|+++..+.+..     ....-..|...|.+|+|+++|+++++|
T Consensus       317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~-----~~~~e~~h~~~Is~is~~~~g~~~atc  391 (420)
T KOG2096|consen  317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKD-----YPELEDIHSTTISSISYSSDGKYIATC  391 (420)
T ss_pred             chHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCcc-----chhHHHhhcCceeeEEecCCCcEEeee
Confidence            2233333    1223334488999999888888889999999987554     444556799999999999999999999


Q ss_pred             cC
Q 043707          343 SS  344 (347)
Q Consensus       343 s~  344 (347)
                      |+
T Consensus       392 Gd  393 (420)
T KOG2096|consen  392 GD  393 (420)
T ss_pred             cc
Confidence            85

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.87  E-value=3e-21  Score=164.20  Aligned_cols=194  Identities=19%  Similarity=0.308  Sum_probs=153.2

Q ss_pred             eeccccEEEEeec----CCEEEEecCCCcEEEEeCC------------------CcceeeecCCCCeeEEEEeC-CCCEE
Q 043707          120 VRKEGHIYSLAAS----GDLLYTGSDSKNIRVWKNL------------------KEFSGFKSNSGLVKAIIITG-DSNKI  176 (347)
Q Consensus       120 ~~h~~~V~~l~~~----~~~l~tg~~dg~I~vwd~~------------------~~~~~~~~h~~~V~~l~~sp-~~~~l  176 (347)
                      ..|.+.|..+...    ..+.++=++.|.|+||++.                  +++.++.+|.+.=++|+|+| ....|
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L  227 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL  227 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence            3566666666532    3477778999999999842                  34566788999999999999 33468


Q ss_pred             EEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeC
Q 043707          177 FTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSW  255 (347)
Q Consensus       177 ~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~  255 (347)
                      ++|..-+.|++|...++.-..                             ....+.+|...|-.|+|+|. ...|++|+.
T Consensus       228 lsGDc~~~I~lw~~~~g~W~v-----------------------------d~~Pf~gH~~SVEDLqWSptE~~vfaScS~  278 (440)
T KOG0302|consen  228 LSGDCVKGIHLWEPSTGSWKV-----------------------------DQRPFTGHTKSVEDLQWSPTEDGVFASCSC  278 (440)
T ss_pred             ccCccccceEeeeeccCceee-----------------------------cCccccccccchhhhccCCccCceEEeeec
Confidence            999888999999998764211                             11122359999999999995 678999999


Q ss_pred             CCcEEEEeCCCC---EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEE
Q 043707          256 DKTLKVWRISDC---KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALA  331 (347)
Q Consensus       256 dg~i~vwdl~~~---~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~  331 (347)
                      ||+|+|||+|.+   .++.. ++|.+.|+.|.|+..- +||+|+.||+++|||++.-+.   ..++..+..|..+|++|.
T Consensus       279 DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~---~~pVA~fk~Hk~pItsie  354 (440)
T KOG0302|consen  279 DGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKS---GQPVATFKYHKAPITSIE  354 (440)
T ss_pred             CceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccC---CCcceeEEeccCCeeEEE
Confidence            999999999988   34443 8999999999998764 899999999999999996543   257788899999999999


Q ss_pred             EccCC-CEEEEecCCC
Q 043707          332 VNQES-AVVYCGSSDG  346 (347)
Q Consensus       332 ~~p~~-~~l~sgs~DG  346 (347)
                      |+|.. ..|+++|.|.
T Consensus       355 W~p~e~s~iaasg~D~  370 (440)
T KOG0302|consen  355 WHPHEDSVIAASGEDN  370 (440)
T ss_pred             eccccCceEEeccCCC
Confidence            99965 6677777664

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.87  E-value=2.4e-20  Score=162.42  Aligned_cols=218  Identities=18%  Similarity=0.299  Sum_probs=166.0

Q ss_pred             eccccEEEEe--ecCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCc
Q 043707          121 RKEGHIYSLA--ASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPS  196 (347)
Q Consensus       121 ~h~~~V~~l~--~~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~  196 (347)
                      .|..+|.+++  ++|++|++|+.|..|.||+..  +.++.+.+|.+.|.+++|-.....+++++.|+.|++|+++.....
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~v  279 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYV  279 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHH
Confidence            7888888776  578999999999999999854  567889999999999999998889999999999999999865422


Q ss_pred             e--------eeeecccccccceEEecc-CCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 043707          197 V--------HKRVGSLPTFKDYVKSSV-NPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC  267 (347)
Q Consensus       197 ~--------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~  267 (347)
                      .        ...+..+........... ....++.+....+.++.++.+.+-|++|-.+ ..+++|+.+|.|.+|++.+.
T Consensus       280 etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KK  358 (479)
T KOG0299|consen  280 ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKK  358 (479)
T ss_pred             HHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeeccc
Confidence            1        111222222222222212 2234556666667778889999999999865 57899999999999999999


Q ss_pred             EEEEEEe-cCC-----------CcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEcc
Q 043707          268 KCLESIN-AHD-----------DAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQ  334 (347)
Q Consensus       268 ~~~~~~~-~h~-----------~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p  334 (347)
                      +++.+.+ +|.           .+|++++..|.. ++++|+.+|.|++|.+..+-+  ...++..+. -.+.|++|+|++
T Consensus       359 kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r--~i~~l~~ls-~~GfVNsl~f~~  435 (479)
T KOG0299|consen  359 KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR--AINLLYSLS-LVGFVNSLAFSN  435 (479)
T ss_pred             CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc--ccceeeecc-cccEEEEEEEcc
Confidence            9887764 331           278999998876 999999999999999986543  222344433 467899999999


Q ss_pred             CCCEEEEe
Q 043707          335 ESAVVYCG  342 (347)
Q Consensus       335 ~~~~l~sg  342 (347)
                      +|+.|++|
T Consensus       436 sgk~ivag  443 (479)
T KOG0299|consen  436 SGKRIVAG  443 (479)
T ss_pred             CCCEEEEe
Confidence            99977765

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.87  E-value=1e-20  Score=166.40  Aligned_cols=200  Identities=17%  Similarity=0.320  Sum_probs=156.5

Q ss_pred             eeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCCCc-----ceeeec--CCCCeeEEEEeCCCCEEEEEeCCCcE
Q 043707          115 LIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE-----FSGFKS--NSGLVKAIIITGDSNKIFTGHQDGKI  185 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~~~-----~~~~~~--h~~~V~~l~~sp~~~~l~s~~~Dg~I  185 (347)
                      .+.+| .|..-|.++..+  .+.++||+. |.|+|||+...     +..+..  ....|..+...|||+.|++|+.-.++
T Consensus       412 q~~tL-~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastl  489 (705)
T KOG0639|consen  412 QINTL-AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTL  489 (705)
T ss_pred             hhhhh-ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccccee
Confidence            34444 677777777764  458999986 78999996543     222222  24578999999999999999999999


Q ss_pred             EEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 043707          186 RIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS  265 (347)
Q Consensus       186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~  265 (347)
                      .|||+....+.....+..                              ..-....++.+||.++.++++.||.|.|||+.
T Consensus       490 siWDLAapTprikaelts------------------------------sapaCyALa~spDakvcFsccsdGnI~vwDLh  539 (705)
T KOG0639|consen  490 SIWDLAAPTPRIKAELTS------------------------------SAPACYALAISPDAKVCFSCCSDGNIAVWDLH  539 (705)
T ss_pred             eeeeccCCCcchhhhcCC------------------------------cchhhhhhhcCCccceeeeeccCCcEEEEEcc
Confidence            999998776443333221                              22345678999999999999999999999999


Q ss_pred             CCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCcc---------------------------ce----
Q 043707          266 DCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG---------------------------TK----  313 (347)
Q Consensus       266 ~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~---------------------------~~----  313 (347)
                      +...+..|++|.+.+.||.+++|| .|.+|+-|++||.||++...+.                           ..    
T Consensus       540 nq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevl  619 (705)
T KOG0639|consen  540 NQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVL  619 (705)
T ss_pred             cceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEE
Confidence            999999999999999999999999 8999999999999999854330                           00    


Q ss_pred             ---eeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          314 ---HFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       314 ---~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                         ......+.-|+..|.+|.|.+.|+++++.+.|.
T Consensus       620 h~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDn  655 (705)
T KOG0639|consen  620 HTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDN  655 (705)
T ss_pred             ecCCccceeecccccEEEEEEecccCceeeecCchh
Confidence               001223456788999999999999999999886

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=7.2e-22  Score=181.49  Aligned_cols=175  Identities=17%  Similarity=0.285  Sum_probs=142.7

Q ss_pred             cCCEEEEecCCCcEEEEeCCC-----cceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeecccc
Q 043707          132 SGDLLYTGSDSKNIRVWKNLK-----EFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLP  205 (347)
Q Consensus       132 ~~~~l~tg~~dg~I~vwd~~~-----~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~  205 (347)
                      ..++|||++..|.|.+||+.+     .+..|..|...|.++.|++ +..+|++|++||+|++||++..+......     
T Consensus        99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~-----  173 (839)
T KOG0269|consen   99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR-----  173 (839)
T ss_pred             hhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc-----
Confidence            366999999999999999765     3557889999999999998 67799999999999999999876432222     


Q ss_pred             cccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCC-EEEEEEecCCCcEEEE
Q 043707          206 TFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDC-KCLESINAHDDAINSV  283 (347)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~vwdl~~~-~~~~~~~~h~~~v~~i  283 (347)
                                                 +..+.|+.+.|+| .+..++++.+.|.+.+||+|.. ++...+.+|.++|.|+
T Consensus       174 ---------------------------~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~  226 (839)
T KOG0269|consen  174 ---------------------------SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCL  226 (839)
T ss_pred             ---------------------------ccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEE
Confidence                                       3567899999999 4789999999999999999976 5678889999999999


Q ss_pred             EeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCC-EEEEec
Q 043707          284 VAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESA-VVYCGS  343 (347)
Q Consensus       284 ~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~l~sgs  343 (347)
                      .|+|++ +|||||.|+.|+|||.........    .+ ..-..+|..|+|-|+.. +|++++
T Consensus       227 nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~----~t-InTiapv~rVkWRP~~~~hLAtcs  283 (839)
T KOG0269|consen  227 NWHPNREWLATGGRDKMVKIWDMTDSRAKPK----HT-INTIAPVGRVKWRPARSYHLATCS  283 (839)
T ss_pred             eecCCCceeeecCCCccEEEEeccCCCccce----eE-EeecceeeeeeeccCccchhhhhh
Confidence            999986 999999999999999975432111    11 11245899999999874 455554

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.87  E-value=2.1e-21  Score=171.10  Aligned_cols=195  Identities=19%  Similarity=0.261  Sum_probs=148.9

Q ss_pred             eeeeccccEEEEeec---CCEEEEecCCCcEEEEeCCCc---ceeee-----cCCCCeeEEEEeCCCCEEEEEeCCCcEE
Q 043707          118 SIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLKE---FSGFK-----SNSGLVKAIIITGDSNKIFTGHQDGKIR  186 (347)
Q Consensus       118 ~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~~~---~~~~~-----~h~~~V~~l~~sp~~~~l~s~~~Dg~I~  186 (347)
                      ..++|.+.++|-+|.   .+.++|++.||++||||..+.   .+.++     +-.-.++.++|++++..||+|+.||.|.
T Consensus       263 nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ  342 (641)
T KOG0772|consen  263 NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQ  342 (641)
T ss_pred             ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCcee
Confidence            345788888888876   348999999999999996543   22222     2334789999999999999999999999


Q ss_pred             EEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCC--CeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 043707          187 IWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYD--AVSCLSLNAEQGLLYSGSWDKTLKVWRI  264 (347)
Q Consensus       187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~l~~~~~~~~l~s~s~dg~i~vwdl  264 (347)
                      +|+...........+.                             -.|..  .|+||.|+++|++|++-+.|+++++|||
T Consensus       343 ~W~~~~~~v~p~~~vk-----------------------------~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDL  393 (641)
T KOG0772|consen  343 IWDKGSRTVRPVMKVK-----------------------------DAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDL  393 (641)
T ss_pred             eeecCCcccccceEee-----------------------------eccCCCCceeEEEeccccchhhhccCCCceeeeec
Confidence            9998655433222221                             14766  8999999999999999999999999999


Q ss_pred             CCCE-EEEEEecCC--CcEEEEEeCCCC-EEEEEeC------CCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEcc
Q 043707          265 SDCK-CLESINAHD--DAINSVVAGFDS-LVFTGSA------DGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQ  334 (347)
Q Consensus       265 ~~~~-~~~~~~~h~--~~v~~i~~~~~~-~l~s~~~------dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p  334 (347)
                      ++.+ ++....+-.  -+-+.++|+|+. +|++|..      -|.+.+||..+..      .++.+......|..+.|+|
T Consensus       394 rq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d------~v~ki~i~~aSvv~~~Whp  467 (641)
T KOG0772|consen  394 RQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD------TVYKIDISTASVVRCLWHP  467 (641)
T ss_pred             cccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee------eEEEecCCCceEEEEeecc
Confidence            9864 555544322  234667899987 7777643      4689999987443      4555555678899999999


Q ss_pred             CCCEEEEecCCCC
Q 043707          335 ESAVVYCGSSDGL  347 (347)
Q Consensus       335 ~~~~l~sgs~DG~  347 (347)
                      .-+.|.+|+.||+
T Consensus       468 kLNQi~~gsgdG~  480 (641)
T KOG0772|consen  468 KLNQIFAGSGDGT  480 (641)
T ss_pred             hhhheeeecCCCc
Confidence            9999999999985

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.87  E-value=4.4e-21  Score=155.06  Aligned_cols=192  Identities=17%  Similarity=0.242  Sum_probs=147.0

Q ss_pred             eEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCCCc---ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEec
Q 043707          116 IGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE---FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKV  190 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~~~---~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~  190 (347)
                      ++++ .|+-.|.+++++  .++|+||+.++.+||||..++   ...+.+|.+.|..+.|.-..+.|++...|++||+||.
T Consensus        94 lhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~  172 (334)
T KOG0278|consen   94 LHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDH  172 (334)
T ss_pred             hhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEe
Confidence            4444 577777787775  669999999999999997644   6678899999999999998889999999999999999


Q ss_pred             CCCCCceeeeeccccccc------ceEEe-ccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 043707          191 SRKNPSVHKRVGSLPTFK------DYVKS-SVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWR  263 (347)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwd  263 (347)
                      +++...............      +++.. ......+++...-.......-...|.+.+++|+...+++|+.|..++.||
T Consensus       173 rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfD  252 (334)
T KOG0278|consen  173 RTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFD  252 (334)
T ss_pred             ccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEe
Confidence            999765544433322211      11111 11112222222222222333456688899999999999999999999999


Q ss_pred             CCCCEEEEEE-ecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccC
Q 043707          264 ISDCKCLESI-NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQ  308 (347)
Q Consensus       264 l~~~~~~~~~-~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~  308 (347)
                      ..+++.+..+ ++|-++|.|+.|+|+| ..++|+.||+|++|.....
T Consensus       253 y~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~  299 (334)
T KOG0278|consen  253 YNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG  299 (334)
T ss_pred             ccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence            9999999986 8999999999999999 7788999999999998643

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.86  E-value=4.5e-20  Score=152.97  Aligned_cols=220  Identities=16%  Similarity=0.230  Sum_probs=162.6

Q ss_pred             EeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCC-CcceeeecCCCCeeEEEEeCCCC--EEEEEeCCCcEEEEecC
Q 043707          117 GSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL-KEFSGFKSNSGLVKAIIITGDSN--KIFTGHQDGKIRIWKVS  191 (347)
Q Consensus       117 ~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~-~~~~~~~~h~~~V~~l~~sp~~~--~l~s~~~Dg~I~vwd~~  191 (347)
                      +....|.++|+++.|+  |..+++|+.|+.+++||+. .....+..|.++|..+.|-+...  .|+||+.|++|+.||.+
T Consensus        66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R  145 (347)
T KOG0647|consen   66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR  145 (347)
T ss_pred             hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccC
Confidence            3455689999999984  7799999999999999976 45677888999999999988655  79999999999999999


Q ss_pred             CCCCceeeeeccc----ccccceEEeccCCCeEEEE-eecceeeeeec----CCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 043707          192 RKNPSVHKRVGSL----PTFKDYVKSSVNPKNYVEV-RRNRNVLKIRH----YDAVSCLSLNAEQGLLYSGSWDKTLKVW  262 (347)
Q Consensus       192 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h----~~~V~~l~~~~~~~~l~s~s~dg~i~vw  262 (347)
                      ...+.....+...    .....++........+... ..+.......+    .-.++||+...+....+.|+-+|.+-|.
T Consensus       146 ~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq  225 (347)
T KOG0647|consen  146 SSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQ  225 (347)
T ss_pred             CCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEE
Confidence            8776554443321    1111222222222222211 11222222222    3458999999998888999999999999


Q ss_pred             eCCCC--EEEEEEecCCC---------cEEEEEeCCC-CEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEE
Q 043707          263 RISDC--KCLESINAHDD---------AINSVVAGFD-SLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITAL  330 (347)
Q Consensus       263 dl~~~--~~~~~~~~h~~---------~v~~i~~~~~-~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l  330 (347)
                      .+..+  +.-.+|+.|..         +|++|+|+|. |.|+|+|.||++.+||-+...      .+.....|..+|++.
T Consensus       226 ~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~------kLk~s~~~~qpItcc  299 (347)
T KOG0647|consen  226 YIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDART------KLKTSETHPQPITCC  299 (347)
T ss_pred             ecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhh------hhhccCcCCCcccee
Confidence            99876  44556777763         5788999997 599999999999999987433      356667789999999


Q ss_pred             EEccCCCEEEEe
Q 043707          331 AVNQESAVVYCG  342 (347)
Q Consensus       331 ~~~p~~~~l~sg  342 (347)
                      +|+.+|.+++-+
T Consensus       300 ~fn~~G~ifaYA  311 (347)
T KOG0647|consen  300 SFNRNGSIFAYA  311 (347)
T ss_pred             EecCCCCEEEEE
Confidence            999999877654

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=1.2e-21  Score=176.93  Aligned_cols=181  Identities=23%  Similarity=0.480  Sum_probs=152.0

Q ss_pred             ecCCEEEEecCCCcEEEEeCCC--------cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeec
Q 043707          131 ASGDLLYTGSDSKNIRVWKNLK--------EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVG  202 (347)
Q Consensus       131 ~~~~~l~tg~~dg~I~vwd~~~--------~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~  202 (347)
                      +.+++|+||+.||.|++|+...        ....++.|...|.+++...+++.|++++.|-+|++|+...........+.
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir  114 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR  114 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence            3477899999999999998432        25668889999999999999999999999999999999876411111111


Q ss_pred             ccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEE-cCCCCEEEEEeCCCcEEEEeCCCC--EEEEE-------
Q 043707          203 SLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSL-NAEQGLLYSGSWDKTLKVWRISDC--KCLES-------  272 (347)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-~~~~~~l~s~s~dg~i~vwdl~~~--~~~~~-------  272 (347)
                                                    .|.+.|.|++. .++..++++|+-|+.|.+||+.++  +.+.+       
T Consensus       115 ------------------------------~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~  164 (735)
T KOG0308|consen  115 ------------------------------THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVN  164 (735)
T ss_pred             ------------------------------cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccc
Confidence                                          49999999999 778889999999999999999977  22322       


Q ss_pred             -Ee-cCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          273 -IN-AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       273 -~~-~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                       +. ++...|.+++-++.+ .|++|+..+.|++||.++..+      +-.+.+|...|.+|-.++||..++++|+||+
T Consensus       165 sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~k------imkLrGHTdNVr~ll~~dDGt~~ls~sSDgt  236 (735)
T KOG0308|consen  165 SLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKK------IMKLRGHTDNVRVLLVNDDGTRLLSASSDGT  236 (735)
T ss_pred             cCCCCCccceeeeecCCcceEEEecCcccceEEeccccccc------eeeeeccccceEEEEEcCCCCeEeecCCCce
Confidence             33 788899999999888 888999999999999997664      5566799999999999999999999999996

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.86  E-value=8.6e-21  Score=157.04  Aligned_cols=157  Identities=23%  Similarity=0.303  Sum_probs=131.1

Q ss_pred             CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeee
Q 043707          152 KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLK  231 (347)
Q Consensus       152 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (347)
                      .....+.+|.+.|+.+.|+|+|..|++|+.|..|.+|++.........                               .
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~-------------------------------l   86 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWV-------------------------------L   86 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceee-------------------------------e
Confidence            445667899999999999999999999999999999997654322211                               1


Q ss_pred             eecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCC
Q 043707          232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQG  309 (347)
Q Consensus       232 ~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~  309 (347)
                      .+|.++|..+.|.++++.+++++.|++++.||+++|++++.++.|...|+++.-..-|  ++.+++.|++++|||++..+
T Consensus        87 kgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~  166 (338)
T KOG0265|consen   87 KGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE  166 (338)
T ss_pred             ccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc
Confidence            1599999999999999999999999999999999999999999999999998743334  78899999999999998432


Q ss_pred             ccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          310 KGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       310 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                            ..+++ ....+++++.|..++..+++|+-|+
T Consensus       167 ------~~~t~-~~kyqltAv~f~d~s~qv~sggIdn  196 (338)
T KOG0265|consen  167 ------AIKTF-ENKYQLTAVGFKDTSDQVISGGIDN  196 (338)
T ss_pred             ------hhhcc-ccceeEEEEEecccccceeeccccC
Confidence                  23332 2355899999999999999998874

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=1.2e-19  Score=150.92  Aligned_cols=218  Identities=16%  Similarity=0.183  Sum_probs=161.2

Q ss_pred             eEeeeeccccEEEEeec-CCEEEEecCCCcEEEEeCCC-cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 043707          116 IGSIVRKEGHIYSLAAS-GDLLYTGSDSKNIRVWKNLK-EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRK  193 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~~-~~~l~tg~~dg~I~vwd~~~-~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~  193 (347)
                      +.....|++++++.++. ...+++|+.||.|+++|+.. ....+..|..+|.||.+.+....+++|+.|++|++||.+..
T Consensus        47 l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~  126 (323)
T KOG1036|consen   47 LKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK  126 (323)
T ss_pred             hhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc
Confidence            33444699999999985 56899999999999999664 35566779999999999998789999999999999999864


Q ss_pred             CCceeeeecccccccceEEeccCCCeEEE-----------Eeecceee---eeecCCCeeEEEEcCCCCEEEEEeCCCcE
Q 043707          194 NPSVHKRVGSLPTFKDYVKSSVNPKNYVE-----------VRRNRNVL---KIRHYDAVSCLSLNAEQGLLYSGSWDKTL  259 (347)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~---~~~h~~~V~~l~~~~~~~~l~s~s~dg~i  259 (347)
                      ...     ........+......+..++.           ++......   ...-...++|+++-|++.-++.++-||++
T Consensus       127 ~~~-----~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRV  201 (323)
T KOG1036|consen  127 VVV-----GTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRV  201 (323)
T ss_pred             ccc-----cccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceE
Confidence            321     111112223333333332222           22222111   11234568999999988889999999999


Q ss_pred             EEEeCCCC----EEEEEEecCCC---------cEEEEEeCCC-CEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCC
Q 043707          260 KVWRISDC----KCLESINAHDD---------AINSVVAGFD-SLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQEN  325 (347)
Q Consensus       260 ~vwdl~~~----~~~~~~~~h~~---------~v~~i~~~~~-~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~  325 (347)
                      .+=.++..    +....|+.|..         +|++|+|+|- +.|+||+.||.|.+||+...+      .+..+.....
T Consensus       202 avE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rK------rl~q~~~~~~  275 (323)
T KOG1036|consen  202 AVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRK------RLKQLAKYET  275 (323)
T ss_pred             EEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchh------hhhhccCCCC
Confidence            98777665    44566777743         7999999997 599999999999999998544      3556666677


Q ss_pred             cEEEEEEccCCCEEEEecC
Q 043707          326 AITALAVNQESAVVYCGSS  344 (347)
Q Consensus       326 ~V~~l~~~p~~~~l~sgs~  344 (347)
                      .|..++|+.+|..||.+++
T Consensus       276 SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  276 SISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             ceEEEEeccCCCeEEEEec
Confidence            8999999999999999875

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.86  E-value=1.6e-20  Score=153.15  Aligned_cols=163  Identities=20%  Similarity=0.337  Sum_probs=132.6

Q ss_pred             cceeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCCc-------------------------------------
Q 043707          113 NGLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKE-------------------------------------  153 (347)
Q Consensus       113 ~~~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~~-------------------------------------  153 (347)
                      +..+++..+|++.|+|++.  +.++|+||+.|.+++|||....                                     
T Consensus        42 GerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~  121 (327)
T KOG0643|consen   42 GERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCF  121 (327)
T ss_pred             CceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceE
Confidence            4578999999999999884  5789999999999999984211                                     


Q ss_pred             ------------------ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEecc
Q 043707          154 ------------------FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSV  215 (347)
Q Consensus       154 ------------------~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (347)
                                        +..+..+...++.+-|.|-++.|++|..||.|.+||+++++.......              
T Consensus       122 v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~--------------  187 (327)
T KOG0643|consen  122 VSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDE--------------  187 (327)
T ss_pred             EEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechh--------------
Confidence                              111233556788889999999999999999999999998753222111              


Q ss_pred             CCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEE-----------------------
Q 043707          216 NPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES-----------------------  272 (347)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~-----------------------  272 (347)
                                       .|...|+.|+++++..++++++.|.+-++||.++.+++++                       
T Consensus       188 -----------------~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgG  250 (327)
T KOG0643|consen  188 -----------------EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGG  250 (327)
T ss_pred             -----------------hhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecC
Confidence                             3888999999999999999999999999999986554433                       


Q ss_pred             --------------------------------EecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcc
Q 043707          273 --------------------------------INAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRE  306 (347)
Q Consensus       273 --------------------------------~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~  306 (347)
                                                      +++|-++|++++|+|+| ..++|++||.|++...+
T Consensus       251 GqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  251 GQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             CceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence                                            34588899999999999 77889999999998765

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=4.2e-20  Score=161.17  Aligned_cols=202  Identities=22%  Similarity=0.344  Sum_probs=159.2

Q ss_pred             ccccEEEEee--cCCEEEEecCCCcEEEEeC--CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCce
Q 043707          122 KEGHIYSLAA--SGDLLYTGSDSKNIRVWKN--LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSV  197 (347)
Q Consensus       122 h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~  197 (347)
                      -.+.|.|+..  +|.+|+.|+..|.|++|.+  +..+..+..|-..|+|+.|+.|+.+|+||+.||.|.+|.+..--...
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~  159 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD  159 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence            3467888874  5788988889999999984  46677889999999999999999999999999999999875421100


Q ss_pred             eeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC--CCEEEEEeCCCcEEEEeCCCCEEEEEEec
Q 043707          198 HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE--QGLLYSGSWDKTLKVWRISDCKCLESINA  275 (347)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~dg~i~vwdl~~~~~~~~~~~  275 (347)
                      ...                       .......+..|.-+|+.+...+.  ...|++++.|.++++||+..+..+.++. 
T Consensus       160 ~~~-----------------------~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-  215 (476)
T KOG0646|consen  160 NDH-----------------------SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-  215 (476)
T ss_pred             cCC-----------------------CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-
Confidence            000                       00011223358999999988765  4689999999999999999999998887 


Q ss_pred             CCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCc----------cceeeehhhhhccCC--cEEEEEEccCCCEEEEe
Q 043707          276 HDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGK----------GTKHFLAQVLLKQEN--AITALAVNQESAVVYCG  342 (347)
Q Consensus       276 h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~----------~~~~~~~~~~~~h~~--~V~~l~~~p~~~~l~sg  342 (347)
                      -...+.+++..|.+ .+++|+++|.|.+.++.....          .........+.+|..  +|+|++.+-||.+|++|
T Consensus       216 fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSG  295 (476)
T KOG0646|consen  216 FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSG  295 (476)
T ss_pred             cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEee
Confidence            45679999999976 899999999999998864331          012233456778877  99999999999999999


Q ss_pred             cCCCC
Q 043707          343 SSDGL  347 (347)
Q Consensus       343 s~DG~  347 (347)
                      +.||.
T Consensus       296 d~dg~  300 (476)
T KOG0646|consen  296 DEDGK  300 (476)
T ss_pred             CCCCC
Confidence            99984

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=3.8e-22  Score=182.03  Aligned_cols=191  Identities=20%  Similarity=0.374  Sum_probs=167.8

Q ss_pred             eeeccccEEEEe--ecCCEEEEecCCCcEEEEeCCCc--ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 043707          119 IVRKEGHIYSLA--ASGDLLYTGSDSKNIRVWKNLKE--FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKN  194 (347)
Q Consensus       119 l~~h~~~V~~l~--~~~~~l~tg~~dg~I~vwd~~~~--~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~  194 (347)
                      +..|...|.++.  .+++.+++|+.|..+-+|...+.  +..+.+|..+|.+|.|+++...|++|+.+|+|++||++..+
T Consensus        24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk  103 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK  103 (825)
T ss_pred             hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence            345777777766  56789999999999999986644  55688999999999999999999999999999999999765


Q ss_pred             CceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEe
Q 043707          195 PSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN  274 (347)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~  274 (347)
                      ...                                .+.+|...+..+.|+|-+.+.++|+.|+.+++||.+...|.+.++
T Consensus       104 ~vr--------------------------------tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~  151 (825)
T KOG0267|consen  104 IVR--------------------------------TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK  151 (825)
T ss_pred             hhh--------------------------------hhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec
Confidence            322                                122599999999999999999999999999999999999999999


Q ss_pred             cCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          275 AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       275 ~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      +|...|.++.|+|+| +++.|++|.+++|||+..+.      +...+..|++.|..+.|+|..-++++||.|++
T Consensus       152 s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk------~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t  219 (825)
T KOG0267|consen  152 SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK------LSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT  219 (825)
T ss_pred             CCcceeEEEeecCCCceeeccCCcceeeeecccccc------cccccccccccccccccCchhhhhccCCCCce
Confidence            999999999999999 99999999999999996332      67888899999999999999999999999975

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=4.9e-21  Score=159.72  Aligned_cols=202  Identities=21%  Similarity=0.300  Sum_probs=162.5

Q ss_pred             cceeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEe------CC---------------------------------
Q 043707          113 NGLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWK------NL---------------------------------  151 (347)
Q Consensus       113 ~~~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd------~~---------------------------------  151 (347)
                      +..+....+|.|.|.++.+.  +.++++++.|++..||.      ..                                 
T Consensus       180 g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~  259 (481)
T KOG0300|consen  180 GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGH  259 (481)
T ss_pred             ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCc
Confidence            34677888999999999974  77999999999999995      10                                 


Q ss_pred             ---CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecce
Q 043707          152 ---KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRN  228 (347)
Q Consensus       152 ---~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (347)
                         .++..+.+|.+.|.+..|...|+++++++.|.+..+||+++++.....                             
T Consensus       260 tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~L-----------------------------  310 (481)
T KOG0300|consen  260 TIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNIL-----------------------------  310 (481)
T ss_pred             eeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccc-----------------------------
Confidence               013347789999999999999999999999999999999998743222                             


Q ss_pred             eeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-EEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEccc
Q 043707          229 VLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC-KCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRREL  307 (347)
Q Consensus       229 ~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~-~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~  307 (347)
                         .+|....+.++-+|..+++++.+.|-+.++||++.. ..+..|++|.+.|+++.|.-+..+++|+.|.+|+|||++.
T Consensus       311 ---tGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrN  387 (481)
T KOG0300|consen  311 ---TGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRN  387 (481)
T ss_pred             ---cCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeecc
Confidence               269999999999999999999999999999999854 4678899999999999999999999999999999999985


Q ss_pred             CCcc----------------------------------------ceeeehhhhhccCCcEEEEEEccCC--CEEEEecCC
Q 043707          308 QGKG----------------------------------------TKHFLAQVLLKQENAITALAVNQES--AVVYCGSSD  345 (347)
Q Consensus       308 ~~~~----------------------------------------~~~~~~~~~~~h~~~V~~l~~~p~~--~~l~sgs~D  345 (347)
                      ....                                        ....+...-.+|...|+|++|..+.  .-|++||.|
T Consensus       388 MRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFD  467 (481)
T KOG0300|consen  388 MRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFD  467 (481)
T ss_pred             ccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCccccccccccc
Confidence            3220                                        0001111234677889999997654  446777776


Q ss_pred             C
Q 043707          346 G  346 (347)
Q Consensus       346 G  346 (347)
                      .
T Consensus       468 R  468 (481)
T KOG0300|consen  468 R  468 (481)
T ss_pred             c
Confidence            4

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=4.1e-20  Score=167.33  Aligned_cols=189  Identities=19%  Similarity=0.246  Sum_probs=156.5

Q ss_pred             eeEeeeec-cccEEEEeec--CCEEEEecCCCcEEEEeCC--Ccceeeec-CCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707          115 LIGSIVRK-EGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKS-NSGLVKAIIITGDSNKIFTGHQDGKIRIW  188 (347)
Q Consensus       115 ~i~~l~~h-~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~--~~~~~~~~-h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw  188 (347)
                      .+..+..- +..|+++.|+  |.+|++|..+|.|.|||..  +....+.+ |...|-+++|.  +..+.+|+.|+.|..+
T Consensus       208 ~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~  285 (484)
T KOG0305|consen  208 SVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNH  285 (484)
T ss_pred             ceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEE
Confidence            33444333 7789999975  8899999999999999944  55667777 99999999998  4599999999999999


Q ss_pred             ecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCE
Q 043707          189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK  268 (347)
Q Consensus       189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~  268 (347)
                      |++..+.....                               +.+|...|..+.|++|+.+|++|+.|+.+.|||....+
T Consensus       286 dvR~~~~~~~~-------------------------------~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~  334 (484)
T KOG0305|consen  286 DVRISQHVVST-------------------------------LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE  334 (484)
T ss_pred             EEecchhhhhh-------------------------------hhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc
Confidence            99987643331                               12599999999999999999999999999999998889


Q ss_pred             EEEEEecCCCcEEEEEeCCC--CEEEEEe--CCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          269 CLESINAHDDAINSVVAGFD--SLVFTGS--ADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       269 ~~~~~~~h~~~v~~i~~~~~--~~l~s~~--~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                      ++..+..|.++|.+++|+|-  ++||+|+  .|++|++||...+.      .+..+ .-...|..|.|++..+.|+++.
T Consensus       335 p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~------~i~~v-dtgsQVcsL~Wsk~~kEi~sth  406 (484)
T KOG0305|consen  335 PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA------RIDSV-DTGSQVCSLIWSKKYKELLSTH  406 (484)
T ss_pred             ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc------Eeccc-ccCCceeeEEEcCCCCEEEEec
Confidence            99999999999999999995  5999875  69999999998543      23332 2356899999999997777654

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=4.6e-19  Score=147.35  Aligned_cols=226  Identities=14%  Similarity=0.254  Sum_probs=160.4

Q ss_pred             eccccEEEEeec--CCEEEEecCCCcEEEEeCCC------cceeeecCCCCeeEEEEeC--CCCEEEEEeCCCcEEEEec
Q 043707          121 RKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLK------EFSGFKSNSGLVKAIIITG--DSNKIFTGHQDGKIRIWKV  190 (347)
Q Consensus       121 ~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~~------~~~~~~~h~~~V~~l~~sp--~~~~l~s~~~Dg~I~vwd~  190 (347)
                      +|++-|.|+.++  |+.+|||+.|++|+|||..+      .....+.|.+.|..|.|.+  -|+.+++|+.|++++||.-
T Consensus        11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE   90 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE   90 (361)
T ss_pred             CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence            577888888864  99999999999999999543      2445788999999999965  5889999999999999976


Q ss_pred             CCCCCce-----------------eeeecccccccceEEeccCCCeEEEEeecceee---------e--------eecCC
Q 043707          191 SRKNPSV-----------------HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVL---------K--------IRHYD  236 (347)
Q Consensus       191 ~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~--------~~h~~  236 (347)
                      .......                 ...+..-|....+.........++.+.......         .        -.+..
T Consensus        91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~  170 (361)
T KOG2445|consen   91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQ  170 (361)
T ss_pred             cccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccC
Confidence            3221110                 011222233333333333333333333221110         1        13666


Q ss_pred             CeeEEEEcCC---CCEEEEEeCC-----CcEEEEeCCCC----EEEEEEecCCCcEEEEEeCCC-C----EEEEEeCCCc
Q 043707          237 AVSCLSLNAE---QGLLYSGSWD-----KTLKVWRISDC----KCLESINAHDDAINSVVAGFD-S----LVFTGSADGT  299 (347)
Q Consensus       237 ~V~~l~~~~~---~~~l~s~s~d-----g~i~vwdl~~~----~~~~~~~~h~~~v~~i~~~~~-~----~l~s~~~dg~  299 (347)
                      ...|+.|++.   ..+|+.|+.+     +.++||.....    ..+.++..|..+|+.|+|.|. |    +||+++.|| 
T Consensus       171 ~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-  249 (361)
T KOG2445|consen  171 PCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-  249 (361)
T ss_pred             cceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-
Confidence            7889999984   5678888865     47889876443    356677899999999999997 3    899999999 


Q ss_pred             EEEEEcccCC-----------c---cceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          300 VKVWRRELQG-----------K---GTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       300 I~vwd~~~~~-----------~---~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      |+||.+....           .   ......+..+..|.+.|+.+.|+-.|..|++.|.||.
T Consensus       250 v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~  311 (361)
T KOG2445|consen  250 VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGC  311 (361)
T ss_pred             EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCce
Confidence            9999997311           0   1123345567889999999999999999999999995

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.85  E-value=1.2e-19  Score=147.62  Aligned_cols=220  Identities=16%  Similarity=0.195  Sum_probs=162.7

Q ss_pred             eeeccccEEEEeec---CCEEEEecCCCcEEEEeCCC--cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 043707          119 IVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRK  193 (347)
Q Consensus       119 l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~  193 (347)
                      ..+|.+.|-.+.++   .++|++++.|++|++||...  +...... ++.=.-+.|+|+|++++.+..|..|...|.++.
T Consensus        60 ~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~-~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~  138 (313)
T KOG1407|consen   60 YRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIET-KGENINITWSPDGEYIAVGNKDDRITFIDARTY  138 (313)
T ss_pred             ccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeec-cCcceEEEEcCCCCEEEEecCcccEEEEEeccc
Confidence            45688878777764   66999999999999999653  3433333 334446789999999999999999999999887


Q ss_pred             CCceeeeeccccc-----ccceEEeccCCCeEEEEeecc----eeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 043707          194 NPSVHKRVGSLPT-----FKDYVKSSVNPKNYVEVRRNR----NVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI  264 (347)
Q Consensus       194 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~----~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl  264 (347)
                      +............     ...-+....++...+++....    ......|.....||.|+|+|++|++|+.|..+-+||+
T Consensus       139 ~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~  218 (313)
T KOG1407|consen  139 KIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDV  218 (313)
T ss_pred             ceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccCh
Confidence            6543322211110     000011111111222222211    1223469999999999999999999999999999999


Q ss_pred             CCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          265 SDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       265 ~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                      ...-|++.+..++-+|..|.|+.+| +||+|++|..|-|=+++++.+     + .. ..+.++-..|+|+|...+||-++
T Consensus       219 ~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~-----~-~e-I~~~~~t~tVAWHPk~~LLAyA~  291 (313)
T KOG1407|consen  219 DELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDR-----V-WE-IPCEGPTFTVAWHPKRPLLAYAC  291 (313)
T ss_pred             hHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCe-----E-EE-eeccCCceeEEecCCCceeeEEe
Confidence            9999999999999999999999998 999999999999999887654     1 11 23577889999999999999988


Q ss_pred             CCC
Q 043707          344 SDG  346 (347)
Q Consensus       344 ~DG  346 (347)
                      +|.
T Consensus       292 ddk  294 (313)
T KOG1407|consen  292 DDK  294 (313)
T ss_pred             cCC
Confidence            774

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.85  E-value=5.3e-20  Score=167.48  Aligned_cols=225  Identities=20%  Similarity=0.303  Sum_probs=180.7

Q ss_pred             cceeEeeeeccccEEEEee-cCCEEEEecCCCcEEEEeC-CCc---ceeeecCCCCeeE-EEEeC-CCCEEEEEeCCCcE
Q 043707          113 NGLIGSIVRKEGHIYSLAA-SGDLLYTGSDSKNIRVWKN-LKE---FSGFKSNSGLVKA-IIITG-DSNKIFTGHQDGKI  185 (347)
Q Consensus       113 ~~~i~~l~~h~~~V~~l~~-~~~~l~tg~~dg~I~vwd~-~~~---~~~~~~h~~~V~~-l~~sp-~~~~l~s~~~Dg~I  185 (347)
                      .++-+.+.+|...|..+.. ++..+++++.||++++|+. .+.   ...+.+|.+.|.. +++.+ ++-.+++|+.|+.|
T Consensus         4 Y~ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i   83 (745)
T KOG0301|consen    4 YKLSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI   83 (745)
T ss_pred             ceeEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence            3456788999999988876 4557999999999999984 333   3457888888877 88886 55569999999999


Q ss_pred             EEEecCCCCCcee-----eeecccccc--cceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCc
Q 043707          186 RIWKVSRKNPSVH-----KRVGSLPTF--KDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKT  258 (347)
Q Consensus       186 ~vwd~~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~  258 (347)
                      .+|......+...     ..+..+...  ..++..+++....+.....-...+.+|...|+.+..-|++ .+++|+.|++
T Consensus        84 ~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKt  162 (745)
T KOG0301|consen   84 IVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPEN-TYVTGSADKT  162 (745)
T ss_pred             EEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchhhhcccCCcchheeeeeecCCC-cEEeccCcce
Confidence            9999988765322     222222211  1245556666655555555555678999999999999887 8999999999


Q ss_pred             EEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCE
Q 043707          259 LKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAV  338 (347)
Q Consensus       259 i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~  338 (347)
                      |++|.-  ++++++|.+|.+.|..+++-+++-|++++.||.|++|++. ++      .+..+.+|..-|.+++...+++.
T Consensus       163 IklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~-ge------~l~~~~ghtn~vYsis~~~~~~~  233 (745)
T KOG0301|consen  163 IKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLD-GE------VLLEMHGHTNFVYSISMALSDGL  233 (745)
T ss_pred             eeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEecc-Cc------eeeeeeccceEEEEEEecCCCCe
Confidence            999974  8899999999999999999999899999999999999994 22      67788999999999998888999


Q ss_pred             EEEecCCCC
Q 043707          339 VYCGSSDGL  347 (347)
Q Consensus       339 l~sgs~DG~  347 (347)
                      ++++|+|++
T Consensus       234 Ivs~gEDrt  242 (745)
T KOG0301|consen  234 IVSTGEDRT  242 (745)
T ss_pred             EEEecCCce
Confidence            999999986

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=2.6e-19  Score=149.34  Aligned_cols=230  Identities=13%  Similarity=0.192  Sum_probs=159.2

Q ss_pred             eeEeeeeccccEEEEeecCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCC
Q 043707          115 LIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSR  192 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~  192 (347)
                      +-++|..-......+...|.+||.|+.||.|.|||+.  ..-+.+.+|..+|.+++|+++|++|+|++.|..|.+||+..
T Consensus        17 l~~tld~~~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~   96 (405)
T KOG1273|consen   17 LTHTLDNPLAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK   96 (405)
T ss_pred             hceeccCCccceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccC
Confidence            3444433222333344459999999999999999954  45678899999999999999999999999999999999999


Q ss_pred             CCCceeeeecccccc--------cceEEeccCCCeEEEEeecce-eeeee-----cCCCeeEEEEcCCCCEEEEEeCCCc
Q 043707          193 KNPSVHKRVGSLPTF--------KDYVKSSVNPKNYVEVRRNRN-VLKIR-----HYDAVSCLSLNAEQGLLYSGSWDKT  258 (347)
Q Consensus       193 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~-----h~~~V~~l~~~~~~~~l~s~s~dg~  258 (347)
                      +.+....+....-..        ..++....+...++....... ..+..     -.....+..|.+.|+++++|...|.
T Consensus        97 gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGk  176 (405)
T KOG1273|consen   97 GSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGK  176 (405)
T ss_pred             CCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcce
Confidence            986555544332111        122233333322222222111 11111     1112334568889999999999999


Q ss_pred             EEEEeCCCCEEEEEEecCC-CcEEEEEeCCCC-EEEEEeCCCcEEEEEccc---CCccceeeehhhhhc--cCCcEEEEE
Q 043707          259 LKVWRISDCKCLESINAHD-DAINSVVAGFDS-LVFTGSADGTVKVWRREL---QGKGTKHFLAQVLLK--QENAITALA  331 (347)
Q Consensus       259 i~vwdl~~~~~~~~~~~h~-~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~---~~~~~~~~~~~~~~~--h~~~V~~l~  331 (347)
                      +.|+|..+.+++..++... ..|..|.++..| .|+.-+.|+.||.|+++.   .++.....+.+.++.  ...+-.+++
T Consensus       177 llv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~cc  256 (405)
T KOG1273|consen  177 LLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCC  256 (405)
T ss_pred             EEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhee
Confidence            9999999999999998666 789999998887 889999999999999872   111111222233322  233456889


Q ss_pred             EccCCCEEEEecC
Q 043707          332 VNQESAVVYCGSS  344 (347)
Q Consensus       332 ~~p~~~~l~sgs~  344 (347)
                      |+.+|.++++|+.
T Consensus       257 fs~dgeYv~a~s~  269 (405)
T KOG1273|consen  257 FSGDGEYVCAGSA  269 (405)
T ss_pred             ecCCccEEEeccc
Confidence            9999999998874

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.84  E-value=4.3e-20  Score=156.47  Aligned_cols=196  Identities=15%  Similarity=0.211  Sum_probs=154.6

Q ss_pred             cceeEeeeeccccEEEEeecCCEEEEecCCCcEEEEeCCC----------------------------------------
Q 043707          113 NGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLK----------------------------------------  152 (347)
Q Consensus       113 ~~~i~~l~~h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~~----------------------------------------  152 (347)
                      ..++.++.+|.|.|..|..+.+.+++++.|++|+.|....                                        
T Consensus        99 R~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~  178 (433)
T KOG0268|consen   99 RECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDN  178 (433)
T ss_pred             hhhhheeecccCceeeEEecccceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCC
Confidence            3468899999999999999889999999999999996210                                        


Q ss_pred             cceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeee
Q 043707          153 EFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLK  231 (347)
Q Consensus       153 ~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (347)
                      +++.+..-...|.++.|+| +...|++|+.|+.|.|||++...+......                              
T Consensus       179 Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~------------------------------  228 (433)
T KOG0268|consen  179 PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL------------------------------  228 (433)
T ss_pred             ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee------------------------------
Confidence            1111222234577888888 566788888999999999998876544332                              


Q ss_pred             eecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCC
Q 043707          232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC-KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQG  309 (347)
Q Consensus       232 ~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~-~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~  309 (347)
                         ...-+.|+|+|.+-.+++|+.|..++.||++.. +++...+.|.++|.++.|+|-| .|++|+.|.+|+||..+.+.
T Consensus       229 ---~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~  305 (433)
T KOG0268|consen  229 ---TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH  305 (433)
T ss_pred             ---eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCc
Confidence               233467999998888999999999999999876 4788889999999999999998 89999999999999997432


Q ss_pred             ccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          310 KGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       310 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      .     ...-....-..|.+|.|+.|.+++++||.||
T Consensus       306 S-----RdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~  337 (433)
T KOG0268|consen  306 S-----RDIYHTKRMQHVFCVKYSMDSKYIISGSDDG  337 (433)
T ss_pred             c-----hhhhhHhhhheeeEEEEeccccEEEecCCCc
Confidence            1     1111122245799999999999999999997

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=2.1e-18  Score=137.75  Aligned_cols=216  Identities=18%  Similarity=0.232  Sum_probs=153.3

Q ss_pred             ccEEEEe--ecCCEEEEecCCCcEEEEeC---CC--------------cceeeecCCCCeeEEEEeCCCCEEEEEeCCCc
Q 043707          124 GHIYSLA--ASGDLLYTGSDSKNIRVWKN---LK--------------EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGK  184 (347)
Q Consensus       124 ~~V~~l~--~~~~~l~tg~~dg~I~vwd~---~~--------------~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~  184 (347)
                      ..|.+++  +.|.+.+.|++.++.+|...   .+              ..+.-+.|.+.|+|.+|+|+|+.|++|+.|.+
T Consensus        33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~  112 (350)
T KOG0641|consen   33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKT  112 (350)
T ss_pred             hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCce
Confidence            3455555  56889999999999998741   11              12234568899999999999999999999999


Q ss_pred             EEEEecCCCCCcee-------eeecc---------cccccceEEeccCCCeEEEEee---c-ceeeeeecCCCeeEEEEc
Q 043707          185 IRIWKVSRKNPSVH-------KRVGS---------LPTFKDYVKSSVNPKNYVEVRR---N-RNVLKIRHYDAVSCLSLN  244 (347)
Q Consensus       185 I~vwd~~~~~~~~~-------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~h~~~V~~l~~~  244 (347)
                      |++..++.......       +..+.         ......++.+...+.-.+.+..   + ....+.+|.+.|..+ ++
T Consensus       113 ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-ys  191 (350)
T KOG0641|consen  113 IKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YS  191 (350)
T ss_pred             EEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EE
Confidence            99987665432110       00000         0111122222222222121111   1 123345788888776 34


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCEEEEEEe--cC-----CCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeee
Q 043707          245 AEQGLLYSGSWDKTLKVWRISDCKCLESIN--AH-----DDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFL  316 (347)
Q Consensus       245 ~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~--~h-----~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~  316 (347)
                      -++-.+++|+.|.+|++||++-..++.++.  .|     ...|.+++..|.| +|++|-.|....+||++.+ +     +
T Consensus       192 wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~-r-----~  265 (350)
T KOG0641|consen  192 WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG-R-----M  265 (350)
T ss_pred             ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC-c-----e
Confidence            457899999999999999999998888774  22     3578999999998 8889999999999999833 2     7


Q ss_pred             hhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          317 AQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       317 ~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      ++.+..|...|.++.|+|...+|++|+.|.
T Consensus       266 iq~f~phsadir~vrfsp~a~yllt~syd~  295 (350)
T KOG0641|consen  266 IQRFHPHSADIRCVRFSPGAHYLLTCSYDM  295 (350)
T ss_pred             eeeeCCCccceeEEEeCCCceEEEEecccc
Confidence            889999999999999999999999999874

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=9.4e-20  Score=156.78  Aligned_cols=190  Identities=16%  Similarity=0.259  Sum_probs=154.8

Q ss_pred             eeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC-----CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 043707          115 LIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL-----KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI  187 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~-----~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~v  187 (347)
                      ..+.+..|+++|+-+.+  +|++||+++.|.+..+|++.     +..+++.+|..+|..+.|+||.+++++|+.|..+++
T Consensus       216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l  295 (519)
T KOG0293|consen  216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL  295 (519)
T ss_pred             hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence            46678889999998886  58899999999999999733     336788899999999999999999999999999999


Q ss_pred             EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 043707          188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC  267 (347)
Q Consensus       188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~  267 (347)
                      ||+.++.......-                               ++...+.+++|.||+..+++|+.|++|..||+. |
T Consensus       296 wDv~tgd~~~~y~~-------------------------------~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-g  343 (519)
T KOG0293|consen  296 WDVDTGDLRHLYPS-------------------------------GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-G  343 (519)
T ss_pred             ccCCcchhhhhccc-------------------------------CcCCCcceeEEccCCceeEecCCCCcEEEecCC-c
Confidence            99999875333221                               256789999999999999999999999999985 4


Q ss_pred             EEEEEEecC-CCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          268 KCLESINAH-DDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       268 ~~~~~~~~h-~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                      ..+...++- ...|.+++..+|| ++++.+.|..|++++++....       ..+..-..+|++++.+.+++++++.=
T Consensus       344 n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d-------r~lise~~~its~~iS~d~k~~LvnL  414 (519)
T KOG0293|consen  344 NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD-------RGLISEEQPITSFSISKDGKLALVNL  414 (519)
T ss_pred             chhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh-------hccccccCceeEEEEcCCCcEEEEEc
Confidence            555555443 3468999999998 888888999999999974322       11333456899999999999877643

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.84  E-value=1.6e-19  Score=164.94  Aligned_cols=198  Identities=16%  Similarity=0.197  Sum_probs=149.5

Q ss_pred             eEeeeeccccEEEEeec-----CCEEEEecCCCcEEEEeCCCc---ceeeecCCCCeeEEEEeCCC--CEEEEEeCCCcE
Q 043707          116 IGSIVRKEGHIYSLAAS-----GDLLYTGSDSKNIRVWKNLKE---FSGFKSNSGLVKAIIITGDS--NKIFTGHQDGKI  185 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~~-----~~~l~tg~~dg~I~vwd~~~~---~~~~~~h~~~V~~l~~sp~~--~~l~s~~~Dg~I  185 (347)
                      ...+.+|+.+|.|+.++     .++||+++.|..|.|||..+.   ++++.+|...|+++.|..+|  .++++|+.|+.|
T Consensus       494 ~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksi  573 (1080)
T KOG1408|consen  494 TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSI  573 (1080)
T ss_pred             hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhh
Confidence            34456677778887765     347777888888888875543   55667777788888877765  567777777665


Q ss_pred             EEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 043707          186 RIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS  265 (347)
Q Consensus       186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~  265 (347)
                      . ++...+..........                         .. .-....+..|+..|..+++++++.|+.|+|||+.
T Consensus       574 m-Fr~~qk~~~g~~f~r~-------------------------t~-t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~  626 (1080)
T KOG1408|consen  574 M-FRVNQKASSGRLFPRH-------------------------TQ-TLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIE  626 (1080)
T ss_pred             h-eehhccccCceecccc-------------------------cc-ccccceEEEeeeCCCcceEEEEecccceEEEecc
Confidence            4 3433221100000000                         00 0023457889999999999999999999999999


Q ss_pred             CCEEEEEEec---CCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEE
Q 043707          266 DCKCLESINA---HDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYC  341 (347)
Q Consensus       266 ~~~~~~~~~~---h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s  341 (347)
                      .++..+.|++   |++....+...|.| ||++.+.|+++.++|.-.++      ++....+|...|+.+.|.+|.++|++
T Consensus       627 sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgE------cvA~m~GHsE~VTG~kF~nDCkHlIS  700 (1080)
T KOG1408|consen  627 SGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGE------CVAQMTGHSEAVTGVKFLNDCKHLIS  700 (1080)
T ss_pred             ccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccch------hhhhhcCcchheeeeeecccchhhee
Confidence            9999999974   66777788889988 99999999999999997543      78999999999999999999999999


Q ss_pred             ecCCC
Q 043707          342 GSSDG  346 (347)
Q Consensus       342 gs~DG  346 (347)
                      .+.||
T Consensus       701 vsgDg  705 (1080)
T KOG1408|consen  701 VSGDG  705 (1080)
T ss_pred             ecCCc
Confidence            99998

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=5.9e-20  Score=159.37  Aligned_cols=178  Identities=22%  Similarity=0.321  Sum_probs=145.4

Q ss_pred             CCEEEEecCCCcEEEEeCC--Cc---------------------ceeeecCCCCeeEEEEeCC-CCEEEEEeCCCcEEEE
Q 043707          133 GDLLYTGSDSKNIRVWKNL--KE---------------------FSGFKSNSGLVKAIIITGD-SNKIFTGHQDGKIRIW  188 (347)
Q Consensus       133 ~~~l~tg~~dg~I~vwd~~--~~---------------------~~~~~~h~~~V~~l~~sp~-~~~l~s~~~Dg~I~vw  188 (347)
                      |+++|.|..|..|.|||+.  ..                     -..-.+|+.+|.++.|+.+ .+.|++|+.|.+|++|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence            6799999999999999832  00                     0112368999999999873 4589999999999999


Q ss_pred             ecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCC
Q 043707          189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDC  267 (347)
Q Consensus       189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwdl~~~  267 (347)
                      |+.++++.....                                .|.+.|.++.|+|. ...|++|+.|+++.+.|+|..
T Consensus       272 D~~~g~p~~s~~--------------------------------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~  319 (463)
T KOG0270|consen  272 DVDTGKPKSSIT--------------------------------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP  319 (463)
T ss_pred             EcCCCCcceehh--------------------------------hcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence            999998644332                                38999999999995 789999999999999999964


Q ss_pred             EEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCC-CEEEEecC
Q 043707          268 KCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQES-AVVYCGSS  344 (347)
Q Consensus       268 ~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~-~~l~sgs~  344 (347)
                      .+....-.-.+.|-.++|.|..  .++++..||+|+-+|+|..++     ++.++.+|...|.+|++++.- .+|++++.
T Consensus       320 ~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~-----~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~  394 (463)
T KOG0270|consen  320 SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK-----PVWTLKAHDDEISGLSVNIQTPGLLSTAST  394 (463)
T ss_pred             cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCC-----ceeEEEeccCCcceEEecCCCCcceeeccc
Confidence            3332222246779999998875  788899999999999997765     888999999999999999866 78888988


Q ss_pred             CCC
Q 043707          345 DGL  347 (347)
Q Consensus       345 DG~  347 (347)
                      |++
T Consensus       395 d~~  397 (463)
T KOG0270|consen  395 DKV  397 (463)
T ss_pred             cce
Confidence            874

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=3e-19  Score=155.86  Aligned_cols=198  Identities=19%  Similarity=0.303  Sum_probs=160.2

Q ss_pred             CCCCCCCcccccc-------------cceeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeC-----------CCc
Q 043707          100 PPYSPNENLLSSC-------------NGLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKN-----------LKE  153 (347)
Q Consensus       100 ~~~~p~~~~~~~~-------------~~~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~-----------~~~  153 (347)
                      ..-+|.|.++...             +.++..+.+|--.|+|+.+.  |.+|+||+.||.|.+|.+           .+.
T Consensus        87 l~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p  166 (476)
T KOG0646|consen   87 LASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKP  166 (476)
T ss_pred             eecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccc
Confidence            3566777765433             34677788899999999984  679999999999999962           244


Q ss_pred             ceeeecCCCCeeEEEEeCC--CCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeee
Q 043707          154 FSGFKSNSGLVKAIIITGD--SNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLK  231 (347)
Q Consensus       154 ~~~~~~h~~~V~~l~~sp~--~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (347)
                      +..|..|+-+|+++...+.  ..+++|++.|.++++||+..+.......                               
T Consensus       167 ~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-------------------------------  215 (476)
T KOG0646|consen  167 LHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-------------------------------  215 (476)
T ss_pred             eeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-------------------------------
Confidence            6778899999999999774  3589999999999999999886443332                               


Q ss_pred             eecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC----------------EEEEEEecCCC--cEEEEEeCCCC-EEE
Q 043707          232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC----------------KCLESINAHDD--AINSVVAGFDS-LVF  292 (347)
Q Consensus       232 ~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~----------------~~~~~~~~h~~--~v~~i~~~~~~-~l~  292 (347)
                        ....+.+++++|.+..++.|+.+|.|.+.++...                ..+..+.+|.+  .|+|++.+-|| +|+
T Consensus       216 --fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl  293 (476)
T KOG0646|consen  216 --FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL  293 (476)
T ss_pred             --cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence              5678999999999999999999999999887432                24566778988  99999999998 999


Q ss_pred             EEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCC
Q 043707          293 TGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQES  336 (347)
Q Consensus       293 s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~  336 (347)
                      +|+.||.|+|||+...      ++++++....++|+.+.+.|-.
T Consensus       294 SGd~dg~VcvWdi~S~------Q~iRtl~~~kgpVtnL~i~~~~  331 (476)
T KOG0646|consen  294 SGDEDGKVCVWDIYSK------QCIRTLQTSKGPVTNLQINPLE  331 (476)
T ss_pred             eeCCCCCEEEEecchH------HHHHHHhhhccccceeEeeccc
Confidence            9999999999999733      3666666567899999986643

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=2.7e-19  Score=155.25  Aligned_cols=189  Identities=17%  Similarity=0.312  Sum_probs=147.3

Q ss_pred             eccccEEEEeec---CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCC
Q 043707          121 RKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKN  194 (347)
Q Consensus       121 ~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~  194 (347)
                      +|+..|.++.++   .+.||+|+.|.+|++||+.  ++...+..|.+.|.+++|+| ....|++|+.|++|++.|.+...
T Consensus       241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~  320 (463)
T KOG0270|consen  241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS  320 (463)
T ss_pred             cchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcc
Confidence            688889999987   4589999999999999954  66788888999999999999 67899999999999999998532


Q ss_pred             CceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCC-EEEEE
Q 043707          195 PSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDC-KCLES  272 (347)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwdl~~~-~~~~~  272 (347)
                      .....                                ....+.|-.++|++. ...++++..||+++-+|+|.. +++.+
T Consensus       321 ~s~~~--------------------------------wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt  368 (463)
T KOG0270|consen  321 NSGKE--------------------------------WKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWT  368 (463)
T ss_pred             ccCce--------------------------------EEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeE
Confidence            11111                                125678899999995 567788889999999999976 89999


Q ss_pred             EecCCCcEEEEEeCCC--CEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCC-CEEEEecCC
Q 043707          273 INAHDDAINSVVAGFD--SLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQES-AVVYCGSSD  345 (347)
Q Consensus       273 ~~~h~~~v~~i~~~~~--~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~-~~l~sgs~D  345 (347)
                      +++|.+.|.+|.++..  +++++++.|+.|++|++.....  +..-.+.+  .-+...|.++.|+- -.|+.||..
T Consensus       369 ~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~--~~v~~~~~--~~~rl~c~~~~~~~a~~la~GG~k  440 (463)
T KOG0270|consen  369 LKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP--KSVKEHSF--KLGRLHCFALDPDVAFTLAFGGEK  440 (463)
T ss_pred             EEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC--cccccccc--cccceeecccCCCcceEEEecCcc
Confidence            9999999999999875  4999999999999999974332  11111111  11235677777765 456666654

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.82  E-value=5.3e-19  Score=145.84  Aligned_cols=197  Identities=19%  Similarity=0.321  Sum_probs=151.7

Q ss_pred             EeeeeccccEEEEee---cCCEEEEecCC-------CcEEEEeCCCccee-----------ee-cCCCCeeEEEEeCCCC
Q 043707          117 GSIVRKEGHIYSLAA---SGDLLYTGSDS-------KNIRVWKNLKEFSG-----------FK-SNSGLVKAIIITGDSN  174 (347)
Q Consensus       117 ~~l~~h~~~V~~l~~---~~~~l~tg~~d-------g~I~vwd~~~~~~~-----------~~-~h~~~V~~l~~sp~~~  174 (347)
                      +.+..|.++|+.++.   +.++|+|+..+       ..+-||.+.+.+..           +. .+-+.|.|+.|.|++.
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~  136 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD  136 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence            456678889999985   45688887653       24778986544332           22 3557899999999998


Q ss_pred             EEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC--CCCEEEE
Q 043707          175 KIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA--EQGLLYS  252 (347)
Q Consensus       175 ~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s  252 (347)
                      .+++-. |..|.+|++..............                          ..++....++-+|+|  +++.+++
T Consensus       137 klasm~-dn~i~l~~l~ess~~vaev~ss~--------------------------s~e~~~~ftsg~WspHHdgnqv~t  189 (370)
T KOG1007|consen  137 KLASMD-DNNIVLWSLDESSKIVAEVLSSE--------------------------SAEMRHSFTSGAWSPHHDGNQVAT  189 (370)
T ss_pred             eeEEec-cCceEEEEcccCcchheeecccc--------------------------cccccceecccccCCCCccceEEE
Confidence            988877 88999999987764211111000                          012556677788998  5777777


Q ss_pred             EeCCCcEEEEeCCCCEEEEEE-ecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEE
Q 043707          253 GSWDKTLKVWRISDCKCLESI-NAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITA  329 (347)
Q Consensus       253 ~s~dg~i~vwdl~~~~~~~~~-~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~  329 (347)
                      .+ |+++..||+|+.++...+ .+|...|..+.|+|+.  +|++|+.||.|++||.+....     +++.+.+|..+|++
T Consensus       190 t~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~-----pv~el~~HsHWvW~  263 (370)
T KOG1007|consen  190 TS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF-----PVQELPGHSHWVWA  263 (370)
T ss_pred             eC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc-----cccccCCCceEEEE
Confidence            65 899999999999887776 4888999999999986  899999999999999996554     89999999999999


Q ss_pred             EEEccCC-CEEEEecCCC
Q 043707          330 LAVNQES-AVVYCGSSDG  346 (347)
Q Consensus       330 l~~~p~~-~~l~sgs~DG  346 (347)
                      |.|+|.- ++|++||+|.
T Consensus       264 VRfn~~hdqLiLs~~SDs  281 (370)
T KOG1007|consen  264 VRFNPEHDQLILSGGSDS  281 (370)
T ss_pred             EEecCccceEEEecCCCc
Confidence            9999965 7888888874

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.82  E-value=8.7e-19  Score=148.73  Aligned_cols=159  Identities=21%  Similarity=0.311  Sum_probs=140.9

Q ss_pred             CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceee
Q 043707          151 LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVL  230 (347)
Q Consensus       151 ~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (347)
                      ...+..|..|+..|.+++.+|+.++++||+.|..-.||++.++......                               
T Consensus        54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~el-------------------------------  102 (399)
T KOG0296|consen   54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGEL-------------------------------  102 (399)
T ss_pred             ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEe-------------------------------
Confidence            4457789999999999999999999999999999999999998732221                               


Q ss_pred             eeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCC
Q 043707          231 KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQG  309 (347)
Q Consensus       231 ~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~  309 (347)
                       .+|.+.|+|+.|+.++.+|++|..+|.|+||+..++.....+...-..+.=+.|+|.+ .|++|+.||.|.+|.+..++
T Consensus       103 -tgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~  181 (399)
T KOG0296|consen  103 -TGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA  181 (399)
T ss_pred             -cCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc
Confidence             2699999999999999999999999999999999998888886555667788999987 88999999999999997542


Q ss_pred             ccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          310 KGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       310 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                            ..+.+.+|..++++=.|.|+|+.++++..||+
T Consensus       182 ------~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt  213 (399)
T KOG0296|consen  182 ------LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT  213 (399)
T ss_pred             ------eeeEecCCCCCcccccccCCCceEEEEecCce
Confidence                  67888999999999999999999999999985

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=3.9e-18  Score=155.05  Aligned_cols=194  Identities=25%  Similarity=0.327  Sum_probs=159.8

Q ss_pred             eeeecc-ccEEEEeec-CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 043707          118 SIVRKE-GHIYSLAAS-GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRK  193 (347)
Q Consensus       118 ~l~~h~-~~V~~l~~~-~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~  193 (347)
                      .+.+++ ..|..++|. +..|.+.+.+|.|.-||+.  +....+....+.|++++.+|.+..++.|+.||.+...+...+
T Consensus        63 vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~  142 (691)
T KOG2048|consen   63 VIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPD  142 (691)
T ss_pred             EEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCc
Confidence            344444 478899987 7799999999999999965  456667778899999999999999999999998777777766


Q ss_pred             CCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEE
Q 043707          194 NPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI  273 (347)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~  273 (347)
                      +........                              ...+.|.+++|++++..|+.|+.||.|++||...+..+...
T Consensus       143 ~I~~~r~l~------------------------------rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~  192 (691)
T KOG2048|consen  143 KITYKRSLM------------------------------RQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHII  192 (691)
T ss_pred             eEEEEeecc------------------------------cccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEe
Confidence            533322221                              35688999999999999999999999999999998877632


Q ss_pred             e-----c---CCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707          274 N-----A---HDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       274 ~-----~---h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                      .     .   ...-|+++.+-.++.|++|..-|+|++||...+.      +.+....|.+.|.+|+..+++.++.++|.|
T Consensus       193 ~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gT------LiqS~~~h~adVl~Lav~~~~d~vfsaGvd  266 (691)
T KOG2048|consen  193 TMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGT------LIQSHSCHDADVLALAVADNEDRVFSAGVD  266 (691)
T ss_pred             eecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcc------hhhhhhhhhcceeEEEEcCCCCeEEEccCC
Confidence            2     1   2335788888888999999999999999998543      788889999999999999999999999999


Q ss_pred             CC
Q 043707          346 GL  347 (347)
Q Consensus       346 G~  347 (347)
                      +.
T Consensus       267 ~~  268 (691)
T KOG2048|consen  267 PK  268 (691)
T ss_pred             Cc
Confidence            73

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=1.4e-18  Score=145.26  Aligned_cols=193  Identities=21%  Similarity=0.274  Sum_probs=146.1

Q ss_pred             ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCcee------------eeecccccccceEEeccCCCeEE
Q 043707          154 FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVH------------KRVGSLPTFKDYVKSSVNPKNYV  221 (347)
Q Consensus       154 ~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~  221 (347)
                      +..+++|.+.|++++|+.||++|+|++.|+.||||+++.-....+            ..+...|....++.+..++..+.
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            346789999999999999999999999999999999986433221            22333455555555555555433


Q ss_pred             EEeeccee---------------eeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeC
Q 043707          222 EVRRNRNV---------------LKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAG  286 (347)
Q Consensus       222 ~~~~~~~~---------------~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~  286 (347)
                      ......+.               ....|.-.|..+-....+.+|++++.|..|.+|+++ |+.+..+...+..-...+.+
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS  237 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS  237 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence            22211110               112355556667777778999999999999999998 99999998888777888999


Q ss_pred             CCC-EEEEEeCCCcEEEEEcccCCccceee--ehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          287 FDS-LVFTGSADGTVKVWRRELQGKGTKHF--LAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       287 ~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~--~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      |+| +|++++----|+||.+-.+.+++-..  ....|.+|+..|+.++|+++.+.+++.|.||+
T Consensus       238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~  301 (420)
T KOG2096|consen  238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK  301 (420)
T ss_pred             CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCc
Confidence            999 78888888899999986655433222  34567899999999999999999999999995

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.81  E-value=5.2e-19  Score=154.16  Aligned_cols=192  Identities=22%  Similarity=0.356  Sum_probs=158.3

Q ss_pred             eEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCCc-------------------ceee-ecCCCCeeEEEEeCCC
Q 043707          116 IGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKE-------------------FSGF-KSNSGLVKAIIITGDS  173 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~~-------------------~~~~-~~h~~~V~~l~~sp~~  173 (347)
                      +..+..|.-.|+|+..  +.++.++++.||+|.-|+....                   .+.- +.|...|.+++.++|+
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            5677789989988875  5679999999999999973211                   1111 3788899999999999


Q ss_pred             CEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEE
Q 043707          174 NKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSG  253 (347)
Q Consensus       174 ~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~  253 (347)
                      ++|++|+.|..|.||+.++.+....                                +.+|.+.|.+++|-.....|+++
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~~--------------------------------~~ghr~~V~~L~fr~gt~~lys~  262 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVKV--------------------------------FKGHRGAVSSLAFRKGTSELYSA  262 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhhc--------------------------------ccccccceeeeeeecCccceeee
Confidence            9999999999999999998875433                                12599999999999988999999


Q ss_pred             eCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEEE-EEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEE
Q 043707          254 SWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVF-TGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAV  332 (347)
Q Consensus       254 s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l~-s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~  332 (347)
                      +.|+++++|++.....+.++.+|++.|..|.....+.++ +|+.|+++++|++...       ..-.+.+|.+.+-|++|
T Consensus       263 s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-------sqlifrg~~~sidcv~~  335 (479)
T KOG0299|consen  263 SADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-------SQLIFRGGEGSIDCVAF  335 (479)
T ss_pred             ecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc-------ceeeeeCCCCCeeeEEE
Confidence            999999999999999999999999999999776666555 5569999999999522       23345677889999999


Q ss_pred             ccCCCEEEEecCCCC
Q 043707          333 NQESAVVYCGSSDGL  347 (347)
Q Consensus       333 ~p~~~~l~sgs~DG~  347 (347)
                      -.+ ..+++||.||.
T Consensus       336 In~-~HfvsGSdnG~  349 (479)
T KOG0299|consen  336 IND-EHFVSGSDNGS  349 (479)
T ss_pred             ecc-cceeeccCCce
Confidence            854 77889999984

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=7.8e-20  Score=174.92  Aligned_cols=197  Identities=20%  Similarity=0.314  Sum_probs=156.4

Q ss_pred             ceeEeeeeccccEEEEeec---CCEEEEecCCCcEEEEeCCCcceeeec----CCCCeeEEEEeC-CCCEEEEEeCCCcE
Q 043707          114 GLIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLKEFSGFKS----NSGLVKAIIITG-DSNKIFTGHQDGKI  185 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~~~~~~~~~----h~~~V~~l~~sp-~~~~l~s~~~Dg~I  185 (347)
                      .++.+...|+|+|..++++   +++||+|+.||.|.|||+.+.-..+..    -.+.|.+++|+. ....|++++.+|++
T Consensus       107 ~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~  186 (1049)
T KOG0307|consen  107 EVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRA  186 (1049)
T ss_pred             HHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCc
Confidence            4678888999999999986   669999999999999997765433322    457899999987 45578999999999


Q ss_pred             EEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCC-CEEEEEeCCC---cEEE
Q 043707          186 RIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ-GLLYSGSWDK---TLKV  261 (347)
Q Consensus       186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~dg---~i~v  261 (347)
                      .|||++..+++......                              .....+..++|||+. ..|++++.|.   .|.+
T Consensus       187 ~iWDlr~~~pii~ls~~------------------------------~~~~~~S~l~WhP~~aTql~~As~dd~~Pviql  236 (1049)
T KOG0307|consen  187 VIWDLRKKKPIIKLSDT------------------------------PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQL  236 (1049)
T ss_pred             eeccccCCCcccccccC------------------------------CCccceeeeeeCCCCceeeeeecCCCCCceeEe
Confidence            99999988654433211                              122457889999974 4566666543   4999


Q ss_pred             EeCCCC-EEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCC-
Q 043707          262 WRISDC-KCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESA-  337 (347)
Q Consensus       262 wdl~~~-~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~-  337 (347)
                      ||+|.. .+++.++.|+..|.++.|++.+  ++++++.|++|.+|+.++++      .+..+.....++..+.|+|... 
T Consensus       237 WDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE------vl~~~p~~~nW~fdv~w~pr~P~  310 (1049)
T KOG0307|consen  237 WDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE------VLGELPAQGNWCFDVQWCPRNPS  310 (1049)
T ss_pred             ecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce------EeeecCCCCcceeeeeecCCCcc
Confidence            999864 5788889999999999999865  99999999999999998654      5666667788999999999774 


Q ss_pred             EEEEecCCC
Q 043707          338 VVYCGSSDG  346 (347)
Q Consensus       338 ~l~sgs~DG  346 (347)
                      .+++++-||
T Consensus       311 ~~A~asfdg  319 (1049)
T KOG0307|consen  311 VMAAASFDG  319 (1049)
T ss_pred             hhhhheecc
Confidence            777777776

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=5.5e-18  Score=141.04  Aligned_cols=182  Identities=18%  Similarity=0.260  Sum_probs=143.2

Q ss_pred             ccEEEEeec--CCEEEEecCCCcEEEEeCCC-cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeee
Q 043707          124 GHIYSLAAS--GDLLYTGSDSKNIRVWKNLK-EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKR  200 (347)
Q Consensus       124 ~~V~~l~~~--~~~l~tg~~dg~I~vwd~~~-~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~  200 (347)
                      ..|..+.++  +..|+.++.||.+++||... .+...-.|..++.+++|.++ ..+++|+.||.|+++|+.+++..... 
T Consensus        14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~ig-   91 (323)
T KOG1036|consen   14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQIG-   91 (323)
T ss_pred             hceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcceeec-
Confidence            456666664  55777778999999999653 34445568899999999985 48999999999999999988632221 


Q ss_pred             ecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcE
Q 043707          201 VGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAI  280 (347)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v  280 (347)
                                                      .|...|.||...+....+++|++|++|++||.+...+...+... ..|
T Consensus        92 --------------------------------th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkV  138 (323)
T KOG1036|consen   92 --------------------------------THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKV  138 (323)
T ss_pred             --------------------------------cCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC-ceE
Confidence                                            39999999999998899999999999999999986666666533 378


Q ss_pred             EEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhh-hhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          281 NSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQV-LLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       281 ~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~-~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      .++... +..|+.|+.|..|.+||++....     ..+. -..-.-.+.+|++.|++.-.++++-||
T Consensus       139 y~~~v~-g~~LvVg~~~r~v~iyDLRn~~~-----~~q~reS~lkyqtR~v~~~pn~eGy~~sSieG  199 (323)
T KOG1036|consen  139 YCMDVS-GNRLVVGTSDRKVLIYDLRNLDE-----PFQRRESSLKYQTRCVALVPNGEGYVVSSIEG  199 (323)
T ss_pred             EEEecc-CCEEEEeecCceEEEEEcccccc-----hhhhccccceeEEEEEEEecCCCceEEEeecc
Confidence            888765 45888899999999999996654     2221 122355799999999888888888887

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.80  E-value=1.1e-18  Score=152.09  Aligned_cols=199  Identities=18%  Similarity=0.210  Sum_probs=157.6

Q ss_pred             eEeeeeccccEEEEeec----CCEEEEecCCCcEEEEeCC------CcceeeecCCCCeeEEEEeC-CCCEEEEEeCCCc
Q 043707          116 IGSIVRKEGHIYSLAAS----GDLLYTGSDSKNIRVWKNL------KEFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGK  184 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~~----~~~l~tg~~dg~I~vwd~~------~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~  184 (347)
                      ...++.|.+.|++++|.    .+++++|+.-|.|-+||+.      ..+..+..|.++|.+|.|+| +..++++.+.||+
T Consensus       179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt  258 (498)
T KOG4328|consen  179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT  258 (498)
T ss_pred             cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence            44566688999999975    2589999999999999973      23556788999999999999 6679999999999


Q ss_pred             EEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 043707          185 IRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI  264 (347)
Q Consensus       185 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl  264 (347)
                      ||+-|++...........                              .....+..+.|+.+...++.+..=|.+.+||+
T Consensus       259 iR~~D~~~~i~e~v~s~~------------------------------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~  308 (498)
T KOG4328|consen  259 IRLQDFEGNISEEVLSLD------------------------------TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDL  308 (498)
T ss_pred             eeeeeecchhhHHHhhcC------------------------------ccceeeeeccccCCCccEEEeecccceEEEEe
Confidence            999999876432211110                              02334567788887777777777779999999


Q ss_pred             CCCEE-EEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEE
Q 043707          265 SDCKC-LESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYC  341 (347)
Q Consensus       265 ~~~~~-~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s  341 (347)
                      ++.+. ...+.-|+..|..|+++|..  +||+++.|++++|||++....+.  .+.-....|...|.+..|+|.+..|++
T Consensus       309 R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~--sp~lst~~HrrsV~sAyFSPs~gtl~T  386 (498)
T KOG4328|consen  309 RTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA--SPFLSTLPHRRSVNSAYFSPSGGTLLT  386 (498)
T ss_pred             ecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCC--CcceecccccceeeeeEEcCCCCceEe
Confidence            98765 67778899999999999975  99999999999999999654321  133445678999999999999988999


Q ss_pred             ecCCC
Q 043707          342 GSSDG  346 (347)
Q Consensus       342 gs~DG  346 (347)
                      .+.|.
T Consensus       387 T~~D~  391 (498)
T KOG4328|consen  387 TCQDN  391 (498)
T ss_pred             eccCC
Confidence            98875

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.80  E-value=1e-19  Score=156.47  Aligned_cols=226  Identities=17%  Similarity=0.239  Sum_probs=147.0

Q ss_pred             eEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCC----cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707          116 IGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK----EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK  189 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~----~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd  189 (347)
                      ...+..|.+.+..+.|  +.+.|++|+.|..|++|+...    ....+.+..+.|+.+.|.+++.++++++.|+.+++|+
T Consensus       168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn  247 (459)
T KOG0288|consen  168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN  247 (459)
T ss_pred             hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence            3456679999999987  347999999999999998542    3566777788999999999999999999999999999


Q ss_pred             cCCCCCceeeeecccccc-cceE-----EeccCCCeEEEEeecceeeeeecCC---CeeEEEEcCCCCEEEEEeCCCcEE
Q 043707          190 VSRKNPSVHKRVGSLPTF-KDYV-----KSSVNPKNYVEVRRNRNVLKIRHYD---AVSCLSLNAEQGLLYSGSWDKTLK  260 (347)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~~~~~~~l~s~s~dg~i~  260 (347)
                      +...+............. ..+.     .........+..+.-....-....-   .+..|..+  ...+++|..|++|+
T Consensus       248 vd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvR  325 (459)
T KOG0288|consen  248 VDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVR  325 (459)
T ss_pred             ccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceE
Confidence            988764322221000000 0000     0000000011111100000000000   11222222  45567777788888


Q ss_pred             EEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEE
Q 043707          261 VWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVV  339 (347)
Q Consensus       261 vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l  339 (347)
                      +||.+...++.....+. .|+++..++++ .|++++.|.++.+.|+++.+-..........  .....+.+.|+|++.|+
T Consensus       326 fwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k--~asDwtrvvfSpd~~Yv  402 (459)
T KOG0288|consen  326 FWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFK--CASDWTRVVFSPDGSYV  402 (459)
T ss_pred             EEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccc--cccccceeEECCCCcee
Confidence            88888888888887665 79999999888 7778899999999999865431111111122  23358999999999999


Q ss_pred             EEecCCC
Q 043707          340 YCGSSDG  346 (347)
Q Consensus       340 ~sgs~DG  346 (347)
                      ++||.||
T Consensus       403 aAGS~dg  409 (459)
T KOG0288|consen  403 AAGSADG  409 (459)
T ss_pred             eeccCCC
Confidence            9999998

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=5.1e-18  Score=148.09  Aligned_cols=221  Identities=14%  Similarity=0.225  Sum_probs=164.7

Q ss_pred             cccEEEEeec--CCEEEEecCCCcEEEEeCC----CcceeeecCCCCeeEEEEeCCCC-EEEEEeCCCcEEEEecCCCCC
Q 043707          123 EGHIYSLAAS--GDLLYTGSDSKNIRVWKNL----KEFSGFKSNSGLVKAIIITGDSN-KIFTGHQDGKIRIWKVSRKNP  195 (347)
Q Consensus       123 ~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~----~~~~~~~~h~~~V~~l~~sp~~~-~l~s~~~Dg~I~vwd~~~~~~  195 (347)
                      .+.|.++.+.  ..+|++|+.||+++||.+.    ..++.+.--..+|.+.+|.|+|. .+++++....++.||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            3568888876  4599999999999999754    33455555568999999999998 899999999999999998876


Q ss_pred             ceeeeecccc--cccce--------EEeccCCC--eEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 043707          196 SVHKRVGSLP--TFKDY--------VKSSVNPK--NYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWR  263 (347)
Q Consensus       196 ~~~~~~~~~~--~~~~~--------~~~~~~~~--~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwd  263 (347)
                      .....+...+  ....|        +....+..  .++...+..-+..+.-.+.|..++|+.+++.|++++.+|.|.+||
T Consensus       293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~n  372 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWN  372 (514)
T ss_pred             ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEe
Confidence            5544443333  11111        11111111  111222233333445678899999999999999999999999999


Q ss_pred             CCCCEEEEEEecCCCcE--EEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEE
Q 043707          264 ISDCKCLESINAHDDAI--NSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVY  340 (347)
Q Consensus       264 l~~~~~~~~~~~h~~~v--~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~  340 (347)
                      +++..+++.+.. ++.|  ++++.++++ +||+|+..|.|.|||.+..-......++..+..-...|++|.|+++.+.||
T Consensus       373 l~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLA  451 (514)
T KOG2055|consen  373 LRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILA  451 (514)
T ss_pred             cCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhh
Confidence            999999999873 3333  455666776 999999999999999876544445567888888888999999999999999


Q ss_pred             EecC
Q 043707          341 CGSS  344 (347)
Q Consensus       341 sgs~  344 (347)
                      .+|.
T Consensus       452 iaS~  455 (514)
T KOG2055|consen  452 IASR  455 (514)
T ss_pred             hhhh
Confidence            8875

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=5.3e-18  Score=159.01  Aligned_cols=187  Identities=16%  Similarity=0.191  Sum_probs=152.8

Q ss_pred             ccccEEEEeecCCEEEEecCCCcEEEEeCCCc--ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceee
Q 043707          122 KEGHIYSLAASGDLLYTGSDSKNIRVWKNLKE--FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHK  199 (347)
Q Consensus       122 h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~~~--~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~  199 (347)
                      +...|++++..+.+|++|+.+++|.+|.....  -..+.-.+-++.+++|+.+|++++.|+.|-.|++-++.+.......
T Consensus        55 ~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~l  134 (933)
T KOG1274|consen   55 SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVL  134 (933)
T ss_pred             cCceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheee
Confidence            66678899988889999999999999985432  2234445678999999999999999999999999999877543332


Q ss_pred             eecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecC---
Q 043707          200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH---  276 (347)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h---  276 (347)
                                                      .+|..+|.+|.|+|++++|++.+.||.++|||+.++.+..++..-   
T Consensus       135 --------------------------------rgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~  182 (933)
T KOG1274|consen  135 --------------------------------RGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKD  182 (933)
T ss_pred             --------------------------------cccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcc
Confidence                                            369999999999999999999999999999999998877666431   


Q ss_pred             -----CCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhh--ccCCcEEEEEEccCCCEEEEecCCC
Q 043707          277 -----DDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLL--KQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       277 -----~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~--~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                           ...+..++|+|++ .++..+.|+.|++|+......      ...+.  .+...+.++.|+|+|+|||+++.||
T Consensus       183 n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~------~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g  254 (933)
T KOG1274|consen  183 NEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL------QFKLRDKLSSSKFSDLQWSPNGKYIAASTLDG  254 (933)
T ss_pred             ccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCcee------heeecccccccceEEEEEcCCCcEEeeeccCC
Confidence                 3456778999995 899999999999999985432      22222  2344599999999999999999987

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.80  E-value=2.3e-18  Score=147.59  Aligned_cols=190  Identities=16%  Similarity=0.260  Sum_probs=149.4

Q ss_pred             eeeeccccEEEEeec---CCEEEEecCCCcEEEEeCC---------CcceeeecCCCCeeEEEEeC-CCCEEEEEeCCCc
Q 043707          118 SIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNL---------KEFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGK  184 (347)
Q Consensus       118 ~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~---------~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~  184 (347)
                      .+.+|++.|..++|+   ...+|+|++|.+|.||++.         +.+..+.+|...|--++|+| -.+.|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            466899999999975   5589999999999999743         34677899999999999999 5568999999999


Q ss_pred             EEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 043707          185 IRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI  264 (347)
Q Consensus       185 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl  264 (347)
                      |.+|++.+++....                                 +.|.+.|.+++|+.+|.+|++.+.|+.|+|||.
T Consensus       156 v~iWnv~tgeali~---------------------------------l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dp  202 (472)
T KOG0303|consen  156 VSIWNVGTGEALIT---------------------------------LDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDP  202 (472)
T ss_pred             EEEEeccCCceeee---------------------------------cCCCCeEEEEEeccCCceeeeecccceeEEEcC
Confidence            99999999864332                                 239999999999999999999999999999999


Q ss_pred             CCCEEEEEEecCCCc-EEEEEeCCCCEEEEEe----CCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEE
Q 043707          265 SDCKCLESINAHDDA-INSVVAGFDSLVFTGS----ADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVV  339 (347)
Q Consensus       265 ~~~~~~~~~~~h~~~-v~~i~~~~~~~l~s~~----~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l  339 (347)
                      ++++.+..-.+|.+. -..+.|-.++.+++.+    .+.++-+||.......   ...+.+. ....|.---|.++..+|
T Consensus       203 r~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP---~~~~elD-tSnGvl~PFyD~dt~iv  278 (472)
T KOG0303|consen  203 RRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP---IALQELD-TSNGVLLPFYDPDTSIV  278 (472)
T ss_pred             CCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCc---ceeEEec-cCCceEEeeecCCCCEE
Confidence            999999988888753 3344566666566544    5789999998755431   1122222 24456556677888888


Q ss_pred             EEecC
Q 043707          340 YCGSS  344 (347)
Q Consensus       340 ~sgs~  344 (347)
                      +.+|.
T Consensus       279 Yl~GK  283 (472)
T KOG0303|consen  279 YLCGK  283 (472)
T ss_pred             EEEec
Confidence            77664

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=2.1e-19  Score=171.96  Aligned_cols=178  Identities=18%  Similarity=0.311  Sum_probs=145.0

Q ss_pred             EEEEecCCCcEEEEeCCC--------cceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeecccc
Q 043707          135 LLYTGSDSKNIRVWKNLK--------EFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLP  205 (347)
Q Consensus       135 ~l~tg~~dg~I~vwd~~~--------~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~  205 (347)
                      +|+.|.+||.|.+||..+        .+..+..|.+.|..+.|++ .++.|++|+.||.|.|||+..-+......  .  
T Consensus        82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~--~--  157 (1049)
T KOG0307|consen   82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG--S--  157 (1049)
T ss_pred             eeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC--C--
Confidence            699999999999998443        2556788999999999999 55699999999999999998754322111  0  


Q ss_pred             cccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCEEEEEEecCCC--cEEE
Q 043707          206 TFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCKCLESINAHDD--AINS  282 (347)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~--~v~~  282 (347)
                                                ..-.+.|.|++|+.. .+.|++++.+|++.|||+|..+++-.+..+..  .+..
T Consensus       158 --------------------------~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~  211 (1049)
T KOG0307|consen  158 --------------------------QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSV  211 (1049)
T ss_pred             --------------------------CCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceee
Confidence                                      014578999999985 67899999999999999999988888876654  4778


Q ss_pred             EEeCCCC--EEEEEeCCC---cEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCC-CEEEEecCCCC
Q 043707          283 VVAGFDS--LVFTGSADG---TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQES-AVVYCGSSDGL  347 (347)
Q Consensus       283 i~~~~~~--~l~s~~~dg---~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~-~~l~sgs~DG~  347 (347)
                      |+|+|+.  .|++++.|.   .|.+||+|....     +++++.+|+..|.+|.|++.+ ++|++++.|+.
T Consensus       212 l~WhP~~aTql~~As~dd~~PviqlWDlR~ass-----P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~  277 (1049)
T KOG0307|consen  212 LAWHPDHATQLLVASGDDSAPVIQLWDLRFASS-----PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNR  277 (1049)
T ss_pred             eeeCCCCceeeeeecCCCCCceeEeecccccCC-----chhhhcccccceeeeccCCCCchhhhcccCCCC
Confidence            9999997  666665543   799999986544     788899999999999999977 99999999973

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.79  E-value=2.1e-17  Score=145.74  Aligned_cols=206  Identities=16%  Similarity=0.271  Sum_probs=156.3

Q ss_pred             CCCCCCCCccccccc------------ceeEeeeeccccEEEEeec-CCEEEEecCCCcEEEEeCC-Cc-----------
Q 043707           99 MPPYSPNENLLSSCN------------GLIGSIVRKEGHIYSLAAS-GDLLYTGSDSKNIRVWKNL-KE-----------  153 (347)
Q Consensus        99 ~~~~~p~~~~~~~~~------------~~i~~l~~h~~~V~~l~~~-~~~l~tg~~dg~I~vwd~~-~~-----------  153 (347)
                      ...|.++|..+.+..            ...+....|.+.|+++..- ...|++|+.|..|..||-. +.           
T Consensus       251 ~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G  330 (626)
T KOG2106|consen  251 CVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFG  330 (626)
T ss_pred             EEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcC
Confidence            335677776654432            2445566899999998853 2345569999999999711 00           


Q ss_pred             ------------------------------ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecc
Q 043707          154 ------------------------------FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGS  203 (347)
Q Consensus       154 ------------------------------~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~  203 (347)
                                                    ....++|....+.++.+|+..+++||++|+.+++|+  ..+....+.   
T Consensus       331 ~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~---  405 (626)
T KOG2106|consen  331 PIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI---  405 (626)
T ss_pred             CeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE---
Confidence                                          011346888899999999999999999999999999  333222222   


Q ss_pred             cccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEE
Q 043707          204 LPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV  283 (347)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i  283 (347)
                                                    ..+++.|+.|+|.| .++.|...|...|.|.++...+..-. ...+++++
T Consensus       406 ------------------------------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v  453 (626)
T KOG2106|consen  406 ------------------------------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVV  453 (626)
T ss_pred             ------------------------------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEE
Confidence                                          45788999999999 99999999999999999855554444 48899999


Q ss_pred             EeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707          284 VAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       284 ~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                      .|+|+| +||.|+.|+.|+||.+...+.  +.......  +..+|+.+.|++|+++|.+-+-|
T Consensus       454 ~ysp~G~~lAvgs~d~~iyiy~Vs~~g~--~y~r~~k~--~gs~ithLDwS~Ds~~~~~~S~d  512 (626)
T KOG2106|consen  454 RYSPDGAFLAVGSHDNHIYIYRVSANGR--KYSRVGKC--SGSPITHLDWSSDSQFLVSNSGD  512 (626)
T ss_pred             EEcCCCCEEEEecCCCeEEEEEECCCCc--EEEEeeee--cCceeEEeeecCCCceEEeccCc
Confidence            999999 999999999999999986655  22223333  34899999999999999987655

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.79  E-value=2.1e-17  Score=145.79  Aligned_cols=216  Identities=17%  Similarity=0.231  Sum_probs=156.0

Q ss_pred             eeeecc-ccEEEEeecC-CEEEEecCCCcEEEEeCCCc--ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 043707          118 SIVRKE-GHIYSLAASG-DLLYTGSDSKNIRVWKNLKE--FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRK  193 (347)
Q Consensus       118 ~l~~h~-~~V~~l~~~~-~~l~tg~~dg~I~vwd~~~~--~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~  193 (347)
                      .+..++ ..|.|+.|.+ .-++||+.+|.|.||+....  .+....|.+.|.+++...+| .|++|+.|..|..||-.-.
T Consensus       240 ~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~G-tllSGgKDRki~~Wd~~y~  318 (626)
T KOG2106|consen  240 IFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDG-TLLSGGKDRKIILWDDNYR  318 (626)
T ss_pred             ccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCc-cEeecCccceEEecccccc
Confidence            343443 4799999864 36889999999999986533  33444899999999999999 5566999999999993322


Q ss_pred             CCceeeeecccccc--------cceEEeccCCCeEE--EEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 043707          194 NPSVHKRVGSLPTF--------KDYVKSSVNPKNYV--EVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWR  263 (347)
Q Consensus       194 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwd  263 (347)
                      + .....++.....        .+++... ..+.++  .+.........+|.+....++.+|+.+.+++++.|+.+++|+
T Consensus       319 k-~r~~elPe~~G~iRtv~e~~~di~vGT-trN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~  396 (626)
T KOG2106|consen  319 K-LRETELPEQFGPIRTVAEGKGDILVGT-TRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN  396 (626)
T ss_pred             c-cccccCchhcCCeeEEecCCCcEEEee-ccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc
Confidence            2 222222111111        1111111 111111  333444566678999999999999999999999999999999


Q ss_pred             CCCCEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          264 ISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       264 l~~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                        ..+++-+.. -..++.|+.|+|.+.+|.|...|...|.|.++..      ++..-.. ..++++++|+|+|.+||.|+
T Consensus       397 --~~k~~wt~~-~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~------lv~~~~d-~~~ls~v~ysp~G~~lAvgs  466 (626)
T KOG2106|consen  397 --DHKLEWTKI-IEDPAECADFHPSGVVAVGTATGRWFVLDTETQD------LVTIHTD-NEQLSVVRYSPDGAFLAVGS  466 (626)
T ss_pred             --CCceeEEEE-ecCceeEeeccCcceEEEeeccceEEEEecccce------eEEEEec-CCceEEEEEcCCCCEEEEec
Confidence              445554443 3567889999999999999999999999998532      3333223 77999999999999999999


Q ss_pred             CCC
Q 043707          344 SDG  346 (347)
Q Consensus       344 ~DG  346 (347)
                      .|+
T Consensus       467 ~d~  469 (626)
T KOG2106|consen  467 HDN  469 (626)
T ss_pred             CCC
Confidence            997

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.79  E-value=1.4e-17  Score=151.89  Aligned_cols=231  Identities=16%  Similarity=0.241  Sum_probs=163.5

Q ss_pred             eeEeeeeccccEEEEee--cCC---EEEEecCCCcEEEEeCC----CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcE
Q 043707          115 LIGSIVRKEGHIYSLAA--SGD---LLYTGSDSKNIRVWKNL----KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKI  185 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~--~~~---~l~tg~~dg~I~vwd~~----~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I  185 (347)
                      .+.++.+|.+.|+|+.+  +.+   ++++|+.|+.|++|.+.    ..+..+++|...+.|  +......+.+.+.|+++
T Consensus        46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~c--v~a~~~~~~~~~ad~~v  123 (764)
T KOG1063|consen   46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVC--VVARSSVMTCKAADGTV  123 (764)
T ss_pred             eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEE--EEeeeeEEEeeccCceE
Confidence            47789999999999996  333   89999999999999865    234556666555544  44333233334789999


Q ss_pred             EEEecCCCCCcee------------eeecccccccceEEeccCCCeEEEEeecc------eeeeeecCCCeeEEEEcCCC
Q 043707          186 RIWKVSRKNPSVH------------KRVGSLPTFKDYVKSSVNPKNYVEVRRNR------NVLKIRHYDAVSCLSLNAEQ  247 (347)
Q Consensus       186 ~vwd~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~h~~~V~~l~~~~~~  247 (347)
                      .+||....+....            ..+..++....++......+..+.+....      ...+.+|.+.|..++|...+
T Consensus       124 ~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~  203 (764)
T KOG1063|consen  124 SVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLG  203 (764)
T ss_pred             EEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccC
Confidence            9999955441110            11122333445555555555555555433      23456899999999998754


Q ss_pred             C---EEEEEeCCCcEEEEeCCCCE---------------------EEEEE----------ecCCCcEEEEEeCCCC-EEE
Q 043707          248 G---LLYSGSWDKTLKVWRISDCK---------------------CLESI----------NAHDDAINSVVAGFDS-LVF  292 (347)
Q Consensus       248 ~---~l~s~s~dg~i~vwdl~~~~---------------------~~~~~----------~~h~~~v~~i~~~~~~-~l~  292 (347)
                      .   +|++++.|..|+||.+.-+.                     ++..+          .+|++.|.++.|+|.+ .|+
T Consensus       204 ~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LL  283 (764)
T KOG1063|consen  204 GDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLL  283 (764)
T ss_pred             CCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhhe
Confidence            4   88999999999999874211                     22222          3899999999999999 899


Q ss_pred             EEeCCCcEEEEEcccCCc----------------------------------------------cceeeehhhhhccCCc
Q 043707          293 TGSADGTVKVWRRELQGK----------------------------------------------GTKHFLAQVLLKQENA  326 (347)
Q Consensus       293 s~~~dg~I~vwd~~~~~~----------------------------------------------~~~~~~~~~~~~h~~~  326 (347)
                      +++.|.++.+|.......                                              .....+.....+|...
T Consensus       284 SASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~  363 (764)
T KOG1063|consen  284 SASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDG  363 (764)
T ss_pred             ecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccccc
Confidence            999999999998753210                                              1112334456789999


Q ss_pred             EEEEEEccCCCEEEEecCCCC
Q 043707          327 ITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       327 V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      |++|+|+|.|.+|++.|.|.|
T Consensus       364 V~dv~W~psGeflLsvs~DQT  384 (764)
T KOG1063|consen  364 VKDVDWDPSGEFLLSVSLDQT  384 (764)
T ss_pred             ceeeeecCCCCEEEEeccccc
Confidence            999999999999999999975

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.79  E-value=1.5e-18  Score=152.83  Aligned_cols=178  Identities=16%  Similarity=0.292  Sum_probs=150.2

Q ss_pred             EEeecCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccc
Q 043707          128 SLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLP  205 (347)
Q Consensus       128 ~l~~~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~  205 (347)
                      ++.++.++++++..||.|.|||+.  ..++.|++|+..+.||.++++|..|.||+.|.+||.||++.++......     
T Consensus       516 a~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-----  590 (705)
T KOG0639|consen  516 AISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-----  590 (705)
T ss_pred             hcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-----
Confidence            556788899999999999999965  4578899999999999999999999999999999999999886543322     


Q ss_pred             cccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEe
Q 043707          206 TFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVA  285 (347)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~  285 (347)
                                                  ....|.++..+|++.+|+.|-..+.+-|.... +.....+..|+..|.++.|
T Consensus       591 ----------------------------F~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKF  641 (705)
T KOG0639|consen  591 ----------------------------FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKF  641 (705)
T ss_pred             ----------------------------hhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEe
Confidence                                        45679999999999999999999988888764 4455677789999999999


Q ss_pred             CCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          286 GFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       286 ~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      .+.| ++++.+.|+-+..|....+..     +.+ . .-...|+++..+-|.++|++|+-|.
T Consensus       642 a~cGkwfvStGkDnlLnawrtPyGas-----iFq-s-kE~SsVlsCDIS~ddkyIVTGSGdk  696 (705)
T KOG0639|consen  642 AYCGKWFVSTGKDNLLNAWRTPYGAS-----IFQ-S-KESSSVLSCDISFDDKYIVTGSGDK  696 (705)
T ss_pred             cccCceeeecCchhhhhhccCccccc-----eee-c-cccCcceeeeeccCceEEEecCCCc
Confidence            9988 899999999999998875543     111 1 2256899999999999999999874

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.78  E-value=3.7e-18  Score=156.05  Aligned_cols=212  Identities=16%  Similarity=0.179  Sum_probs=152.3

Q ss_pred             EEeec--CCEEEEecCCCcEEEEeCCCc-----ceeeecCCCCeeEEEEeC-C----------CCEEEEEeCCCcEEEEe
Q 043707          128 SLAAS--GDLLYTGSDSKNIRVWKNLKE-----FSGFKSNSGLVKAIIITG-D----------SNKIFTGHQDGKIRIWK  189 (347)
Q Consensus       128 ~l~~~--~~~l~tg~~dg~I~vwd~~~~-----~~~~~~h~~~V~~l~~sp-~----------~~~l~s~~~Dg~I~vwd  189 (347)
                      ++.|+  .+.|.....|..++|||+...     ...+..|...|+++.--| +          ...|.||+.|++||+||
T Consensus       329 A~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~  408 (1080)
T KOG1408|consen  329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWD  408 (1080)
T ss_pred             EEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEee
Confidence            34454  558888999999999996533     345567888888887655 1          12599999999999999


Q ss_pred             cCCCCCcee--eeecccccccceEEeccCCCeEE-----EEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 043707          190 VSRKNPSVH--KRVGSLPTFKDYVKSSVNPKNYV-----EVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVW  262 (347)
Q Consensus       190 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vw  262 (347)
                      +........  ..+-. .....+.... ....++     .+..............+++++.+|++++|++|..-|+|+||
T Consensus       409 l~~ctnn~vyrRNils-~~l~ki~y~d-~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy  486 (1080)
T KOG1408|consen  409 LAFCTNNQVYRRNILS-ANLSKIPYED-STQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY  486 (1080)
T ss_pred             cccccccceeecccch-hhhhcCcccc-CchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence            986422111  11000 0000000000 000000     00011111122345679999999999999999999999999


Q ss_pred             eCCCCEEEEEEecCCCcEEEEEeCCCC----EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCC--
Q 043707          263 RISDCKCLESINAHDDAINSVVAGFDS----LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQES--  336 (347)
Q Consensus       263 dl~~~~~~~~~~~h~~~v~~i~~~~~~----~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~--  336 (347)
                      |+...+....+.+|+..|.|+.++...    +||+++.|+-|.|||+..+-     .+++++.+|...|++|+|..+|  
T Consensus       487 ~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny-----~l~qtld~HSssITsvKFa~~gln  561 (1080)
T KOG1408|consen  487 DLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY-----DLVQTLDGHSSSITSVKFACNGLN  561 (1080)
T ss_pred             EehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc-----chhhhhcccccceeEEEEeecCCc
Confidence            999999999999999999999998642    89999999999999997444     4899999999999999999888  


Q ss_pred             CEEEEecCCC
Q 043707          337 AVVYCGSSDG  346 (347)
Q Consensus       337 ~~l~sgs~DG  346 (347)
                      ..++++|.|.
T Consensus       562 ~~MiscGADk  571 (1080)
T KOG1408|consen  562 RKMISCGADK  571 (1080)
T ss_pred             eEEEeccCch
Confidence            7899999885

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=7.4e-17  Score=134.90  Aligned_cols=190  Identities=16%  Similarity=0.257  Sum_probs=135.1

Q ss_pred             ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeeccc-------c-cccceEEecc---CCCeEEE
Q 043707          154 FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSL-------P-TFKDYVKSSV---NPKNYVE  222 (347)
Q Consensus       154 ~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~-------~-~~~~~~~~~~---~~~~~~~  222 (347)
                      .+.|....+.|.++.|+++|..+++++.|.+|+|||..++++.........       . .....+.+..   +...++.
T Consensus         7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs   86 (311)
T KOG1446|consen    7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS   86 (311)
T ss_pred             ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence            344555678899999999999999999999999999998876443322211       0 1111111111   1234555


Q ss_pred             Eeeccee-eeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcE
Q 043707          223 VRRNRNV-LKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTV  300 (347)
Q Consensus       223 ~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I  300 (347)
                      +.+++.+ .+.+|...|..|+.+|-+..+++++.|++|++||++..+|...+.....++  ++|.|+| ++|++...+.|
T Consensus        87 l~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~I  164 (311)
T KOG1446|consen   87 LHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANGSELI  164 (311)
T ss_pred             eecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecCCCeE
Confidence            5555443 456899999999999999999999999999999999988887776544444  7899999 55555555599


Q ss_pred             EEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          301 KVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       301 ~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      ++||++.-+++..... ..........+.|.|+|||++|+.+...+
T Consensus       165 kLyD~Rs~dkgPF~tf-~i~~~~~~ew~~l~FS~dGK~iLlsT~~s  209 (311)
T KOG1446|consen  165 KLYDLRSFDKGPFTTF-SITDNDEAEWTDLEFSPDGKSILLSTNAS  209 (311)
T ss_pred             EEEEecccCCCCceeE-ccCCCCccceeeeEEcCCCCEEEEEeCCC
Confidence            9999997655321111 11114466899999999999988877654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.77  E-value=1.2e-17  Score=143.72  Aligned_cols=172  Identities=20%  Similarity=0.332  Sum_probs=125.6

Q ss_pred             eeecc-ccEEEEeec---CCEEEEecCCCcEEEEeCC-----C------cceeeecCCCCeeEEEEeCCCCEEEEEeCCC
Q 043707          119 IVRKE-GHIYSLAAS---GDLLYTGSDSKNIRVWKNL-----K------EFSGFKSNSGLVKAIIITGDSNKIFTGHQDG  183 (347)
Q Consensus       119 l~~h~-~~V~~l~~~---~~~l~tg~~dg~I~vwd~~-----~------~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg  183 (347)
                      +.-|. .+|+.+.+.   .+.|+||+.|..|++|...     +      -...+..|..+|+++.|+|+|..|++|+.+|
T Consensus         8 i~wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g   87 (434)
T KOG1009|consen    8 ISWHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGG   87 (434)
T ss_pred             EEecCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCc
Confidence            33343 367777763   3389999999999999632     1      1345677999999999999999999999999


Q ss_pred             cEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 043707          184 KIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWR  263 (347)
Q Consensus       184 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwd  263 (347)
                      .|.+|............           ....+....+     -.....+|...|..++|+|++.++++++.|..+++||
T Consensus        88 ~v~lWk~~~~~~~~~d~-----------e~~~~ke~w~-----v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~D  151 (434)
T KOG1009|consen   88 EVFLWKQGDVRIFDADT-----------EADLNKEKWV-----VKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWD  151 (434)
T ss_pred             eEEEEEecCcCCccccc-----------hhhhCccceE-----EEEEecccccchhhhhccCCCceeeeeeccceEEEEE
Confidence            99999876422110000           0000000000     1122335999999999999999999999999999999


Q ss_pred             CCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcc
Q 043707          264 ISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRE  306 (347)
Q Consensus       264 l~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~  306 (347)
                      +..|+.+..+..|...+..++|.|.+ ++++-+.|...+++.+.
T Consensus       152 v~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~  195 (434)
T KOG1009|consen  152 VHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK  195 (434)
T ss_pred             eccceeEeeccccccccceeecchhhhhhhhhccCcccceeeee
Confidence            99999999999999888888888865 67777777655555544

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.77  E-value=8.5e-18  Score=156.08  Aligned_cols=183  Identities=15%  Similarity=0.257  Sum_probs=153.0

Q ss_pred             ccEEEE--eecCCEEEEecCCCcEEEEeCCCcc--eee---ecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCc
Q 043707          124 GHIYSL--AASGDLLYTGSDSKNIRVWKNLKEF--SGF---KSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPS  196 (347)
Q Consensus       124 ~~V~~l--~~~~~~l~tg~~dg~I~vwd~~~~~--~~~---~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~  196 (347)
                      ..++|+  .++|++.+.|...|.|-+|+....+  ..|   ..|.++|.+++...-++.+++++.+|.+++||..++...
T Consensus       449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~  528 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK  528 (910)
T ss_pred             cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence            345444  4689999999999999999976443  233   579999999999998889999999999999999887533


Q ss_pred             eeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecC
Q 043707          197 VHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH  276 (347)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h  276 (347)
                      ....                                 -...+.++..+....+++.+..|-.|+++|..+.+.++.|.+|
T Consensus       529 ~~l~---------------------------------l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh  575 (910)
T KOG1539|consen  529 KSLR---------------------------------LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH  575 (910)
T ss_pred             eeec---------------------------------cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcc
Confidence            3222                                 3456788888888889999999999999999999999999999


Q ss_pred             CCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          277 DDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       277 ~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      .+.|+++.|+||| +|++++.|++|++||+.++..      +-.+ .-..+.+.+.|+|+|.+||+...|+
T Consensus       576 ~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~l------ID~~-~vd~~~~sls~SPngD~LAT~Hvd~  639 (910)
T KOG1539|consen  576 GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTL------IDGL-LVDSPCTSLSFSPNGDFLATVHVDQ  639 (910)
T ss_pred             ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcce------eeeE-ecCCcceeeEECCCCCEEEEEEecC
Confidence            9999999999999 999999999999999986542      2211 2256889999999999999998874

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=7.8e-17  Score=151.26  Aligned_cols=181  Identities=14%  Similarity=0.220  Sum_probs=141.3

Q ss_pred             EEEeecCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeeccc
Q 043707          127 YSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSL  204 (347)
Q Consensus       127 ~~l~~~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~  204 (347)
                      .++.-+|+++|.|++|-.|++.+..  .....+++|.++|.+|.|+|++++||+.+.||+|++||+.++.......  ..
T Consensus       102 ~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~--~v  179 (933)
T KOG1274|consen  102 LAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLT--GV  179 (933)
T ss_pred             EEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcc--cC
Confidence            3444567799999999999999854  4467889999999999999999999999999999999999875432211  11


Q ss_pred             ccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEe--cCCCcEEE
Q 043707          205 PTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN--AHDDAINS  282 (347)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~--~h~~~v~~  282 (347)
                      ....++                      .-...+..++|+|++..|+..+.|+.|++|+...++....+.  .+...+.+
T Consensus       180 ~k~n~~----------------------~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~  237 (933)
T KOG1274|consen  180 DKDNEF----------------------ILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSD  237 (933)
T ss_pred             Cccccc----------------------cccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEE
Confidence            100000                      024556789999998888888889999999999998887775  34455999


Q ss_pred             EEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEE
Q 043707          283 VVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYC  341 (347)
Q Consensus       283 i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s  341 (347)
                      +.|+|.| |||+++.||.|.|||.++...          ......|++++|.|++..|-.
T Consensus       238 ~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----------~~~~~~Vc~~aw~p~~n~it~  287 (933)
T KOG1274|consen  238 LQWSPNGKYIAASTLDGQILVWNVDTHER----------HEFKRAVCCEAWKPNANAITL  287 (933)
T ss_pred             EEEcCCCcEEeeeccCCcEEEEecccchh----------ccccceeEEEecCCCCCeeEE
Confidence            9999999 999999999999999984211          223558999999998865543

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.75  E-value=6.1e-18  Score=141.87  Aligned_cols=214  Identities=17%  Similarity=0.284  Sum_probs=153.8

Q ss_pred             ceeEeeeeccccEEEEeec---CCEEEEecCCCcEEEEeCCCc-----ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcE
Q 043707          114 GLIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLKE-----FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKI  185 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~~~-----~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I  185 (347)
                      ...+.+.+|.+.|..+.+.   .+++++|+.|..||+|++.+.     +....+|.+.|.++.|+++|.+|++|+.|..|
T Consensus       126 ~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhsl  205 (385)
T KOG1034|consen  126 QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSL  205 (385)
T ss_pred             hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceE
Confidence            3566788999999999864   569999999999999997754     33567899999999999999999999999999


Q ss_pred             EEEecCCCCCceeeeec----------ccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC
Q 043707          186 RIWKVSRKNPSVHKRVG----------SLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW  255 (347)
Q Consensus       186 ~vwd~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~  255 (347)
                      ++|++..++........          .+|.....          +....    ..--|...|-|+.|-  |+++++-+-
T Consensus       206 k~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~----------fp~fs----t~diHrnyVDCvrw~--gd~ilSksc  269 (385)
T KOG1034|consen  206 KLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTH----------FPDFS----TTDIHRNYVDCVRWF--GDFILSKSC  269 (385)
T ss_pred             EEEecChhHHhhhhhhhcccCCCCccCcCCccccc----------ccccc----ccccccchHHHHHHH--hhheeeccc
Confidence            99999865421111100          01110000          00000    111388899999886  578999999


Q ss_pred             CCcEEEEeCCC-C-------------EEEEEEecCCCcEEEEEeCCCC---EEEEEeCCCcEEEEEcccCCccceeeehh
Q 043707          256 DKTLKVWRISD-C-------------KCLESINAHDDAINSVVAGFDS---LVFTGSADGTVKVWRRELQGKGTKHFLAQ  318 (347)
Q Consensus       256 dg~i~vwdl~~-~-------------~~~~~~~~h~~~v~~i~~~~~~---~l~s~~~dg~I~vwd~~~~~~~~~~~~~~  318 (347)
                      ++.|..|.... .             ..+..++.....|+-|.|.-|-   +||.|...|.|.+||++.....    ...
T Consensus       270 enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~----~~t  345 (385)
T KOG1034|consen  270 ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP----KCT  345 (385)
T ss_pred             CceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc----cCc
Confidence            99999998721 1             1234455556667777776553   8999999999999999865431    111


Q ss_pred             hhh--ccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          319 VLL--KQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       319 ~~~--~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      ++.  .....|...+|+.|+..|+...+||+
T Consensus       346 tl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~  376 (385)
T KOG1034|consen  346 TLTHSKSGSTVRQTSFSRDGSILVLVCDDGT  376 (385)
T ss_pred             eEEeccccceeeeeeecccCcEEEEEeCCCc
Confidence            222  22457999999999999999999985

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.75  E-value=5.1e-17  Score=134.22  Aligned_cols=198  Identities=17%  Similarity=0.209  Sum_probs=148.9

Q ss_pred             eEeee-eccccEEEEee--cCCEEEEecCCCcEEEEeCCCcce---ee-----ecCCCCeeEEEEeC--CCCEEEEEeCC
Q 043707          116 IGSIV-RKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKEFS---GF-----KSNSGLVKAIIITG--DSNKIFTGHQD  182 (347)
Q Consensus       116 i~~l~-~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~~~~---~~-----~~h~~~V~~l~~sp--~~~~l~s~~~D  182 (347)
                      +..|. .+-+.|.|+.|  +++.|++-. |..|.+|+..+...   .+     ..+....++-+|+|  +++.+++.+ |
T Consensus       115 v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d  192 (370)
T KOG1007|consen  115 VASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-D  192 (370)
T ss_pred             hhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-C
Confidence            44454 45668888886  456777666 77899998653322   11     23556678889999  777777765 8


Q ss_pred             CcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEE
Q 043707          183 GKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKV  261 (347)
Q Consensus       183 g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~v  261 (347)
                      ++++.||+++.+.......                               .|...|..+.|+|+ ..+|++|+.||.|+|
T Consensus       193 ~tl~~~D~RT~~~~~sI~d-------------------------------AHgq~vrdlDfNpnkq~~lvt~gDdgyvri  241 (370)
T KOG1007|consen  193 STLQFWDLRTMKKNNSIED-------------------------------AHGQRVRDLDFNPNKQHILVTCGDDGYVRI  241 (370)
T ss_pred             CcEEEEEccchhhhcchhh-------------------------------hhcceeeeccCCCCceEEEEEcCCCccEEE
Confidence            8999999998765433332                               38889999999997 567899999999999


Q ss_pred             EeCCCC-EEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCc--------------------c---ceee
Q 043707          262 WRISDC-KCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGK--------------------G---TKHF  315 (347)
Q Consensus       262 wdl~~~-~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~--------------------~---~~~~  315 (347)
                      ||.|.. .++.++..|...|.++.|+|..  +|++|+.|..|.+|....-..                    +   ...-
T Consensus       242 WD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg  321 (370)
T KOG1007|consen  242 WDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDG  321 (370)
T ss_pred             EeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccc
Confidence            999865 5789999999999999999864  999999999999997642110                    0   1112


Q ss_pred             ehhhhhccCCcEEEEEEccCC-CEEEEecCCC
Q 043707          316 LAQVLLKQENAITALAVNQES-AVVYCGSSDG  346 (347)
Q Consensus       316 ~~~~~~~h~~~V~~l~~~p~~-~~l~sgs~DG  346 (347)
                      .++++..|+..|.+++|+.-. -.+|+-+.||
T Consensus       322 ~l~tydehEDSVY~~aWSsadPWiFASLSYDG  353 (370)
T KOG1007|consen  322 QLETYDEHEDSVYALAWSSADPWIFASLSYDG  353 (370)
T ss_pred             ccccccccccceEEEeeccCCCeeEEEeccCc
Confidence            344677899999999998744 5677778887

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=3e-17  Score=146.57  Aligned_cols=194  Identities=18%  Similarity=0.374  Sum_probs=145.9

Q ss_pred             cceeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC------------CcceeeecCCCCeeEEEEeCCCCEEEE
Q 043707          113 NGLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL------------KEFSGFKSNSGLVKAIIITGDSNKIFT  178 (347)
Q Consensus       113 ~~~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~------------~~~~~~~~h~~~V~~l~~sp~~~~l~s  178 (347)
                      ..++.++++|+++|.|+..  +++.+++|+.||+|+.|++.            .....+.+|.+.|+.+++++....|++
T Consensus       334 ~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Lls  413 (577)
T KOG0642|consen  334 VEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLS  413 (577)
T ss_pred             eeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceee
Confidence            3478999999999999885  68899999999999999421            234578899999999999998889999


Q ss_pred             EeCCCcEEEEecCCCCCce--eeeecccccccceEEec-------cCCC-e-EEEEeecceee--------eeecCCCee
Q 043707          179 GHQDGKIRIWKVSRKNPSV--HKRVGSLPTFKDYVKSS-------VNPK-N-YVEVRRNRNVL--------KIRHYDAVS  239 (347)
Q Consensus       179 ~~~Dg~I~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~-------~~~~-~-~~~~~~~~~~~--------~~~h~~~V~  239 (347)
                      |+.||++|+|+.....+..  ...-...|...++..+.       .... . +..........        .......+.
T Consensus       414 cs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in  493 (577)
T KOG0642|consen  414 CSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQIN  493 (577)
T ss_pred             ecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccc
Confidence            9999999999988776511  11111222222222111       0000 0 00000001111        112234577


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcc
Q 043707          240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRE  306 (347)
Q Consensus       240 ~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~  306 (347)
                      .+.++|...+.+++..|+.|+++|..+++.+....+|...++++++.|.| +|++++.||.|++|.+.
T Consensus       494 ~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld  561 (577)
T KOG0642|consen  494 KVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLD  561 (577)
T ss_pred             eEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhcc
Confidence            88899999999999999999999999999999999999999999999998 99999999999999986

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.75  E-value=2.3e-17  Score=149.24  Aligned_cols=224  Identities=16%  Similarity=0.200  Sum_probs=138.9

Q ss_pred             eEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCCCc----ceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEE
Q 043707          116 IGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE----FSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIW  188 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~~~----~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vw  188 (347)
                      +.....|.+.|+.+.|-  ...|++++.|.+|++||+...    ...+.+|.+.|.+++|.| +...|++|+.||.|.||
T Consensus        93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW  172 (720)
T KOG0321|consen   93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW  172 (720)
T ss_pred             hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence            45566899999999975  348999999999999996532    334789999999999999 66789999999999999


Q ss_pred             ecCCCCCceeeeecccccccceEEeccCC-CeEEEEeecceeeeeecCCCeeE---EEEcCCCCEEEEEeC-CCcEEEEe
Q 043707          189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNP-KNYVEVRRNRNVLKIRHYDAVSC---LSLNAEQGLLYSGSW-DKTLKVWR  263 (347)
Q Consensus       189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~V~~---l~~~~~~~~l~s~s~-dg~i~vwd  263 (347)
                      |++-..........      ..+....+. ..-......+......+...|..   +.+..|...|++++. |+.|+|||
T Consensus       173 D~R~n~~d~~e~~~------~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWD  246 (720)
T KOG0321|consen  173 DCRCNGVDALEEFD------NRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWD  246 (720)
T ss_pred             EEeccchhhHHHHh------hhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEe
Confidence            99865421111100      000000000 00000111111112234444433   444557788888887 99999999


Q ss_pred             CCCCEEEEE--------EecC---CCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCc---------------------
Q 043707          264 ISDCKCLES--------INAH---DDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGK---------------------  310 (347)
Q Consensus       264 l~~~~~~~~--------~~~h---~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~---------------------  310 (347)
                      ++...+...        +..|   .-.+.++.....| +|++.+.|+.|++|++.....                     
T Consensus       247 LRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lS  326 (720)
T KOG0321|consen  247 LRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELS  326 (720)
T ss_pred             ecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecC
Confidence            987543222        2223   2235555554444 777777799999998875432                     


Q ss_pred             --------------------cceeeehhhhhccCCcEEEEEEccCC-CEEEEecCC
Q 043707          311 --------------------GTKHFLAQVLLKQENAITALAVNQES-AVVYCGSSD  345 (347)
Q Consensus       311 --------------------~~~~~~~~~~~~h~~~V~~l~~~p~~-~~l~sgs~D  345 (347)
                                          .........+.+|.-.|++++|.|.. .-+++|++|
T Consensus       327 pd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD  382 (720)
T KOG0321|consen  327 PDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDD  382 (720)
T ss_pred             CCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccC
Confidence                                01122344566777778888887743 445666665

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=2.6e-17  Score=146.99  Aligned_cols=200  Identities=22%  Similarity=0.394  Sum_probs=154.0

Q ss_pred             eeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC----------CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcE
Q 043707          118 SIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL----------KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKI  185 (347)
Q Consensus       118 ~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~----------~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I  185 (347)
                      ++..|..-|.++.+  ....|++|+.||+|.+|++.          +.+.+|.+|.++|.|+++.+++.++++|+.||+|
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I  368 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI  368 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence            66667777777665  45689999999999999862          3467899999999999999999999999999999


Q ss_pred             EEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 043707          186 RIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS  265 (347)
Q Consensus       186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~  265 (347)
                      +.|++....-..-..                      ....-...+.+|.+.|+.+++++....|++++.||+++.|+..
T Consensus       369 ~~w~~p~n~dp~ds~----------------------dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~  426 (577)
T KOG0642|consen  369 RCWNLPPNQDPDDSY----------------------DPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT  426 (577)
T ss_pred             eeeccCCCCCccccc----------------------CcchhccceeccccceeeeeecccccceeeecCCceEEeeccC
Confidence            999886321100000                      0000112344799999999999999999999999999999875


Q ss_pred             CCEEEEEE---------------------------------------------ec-------CCCcEEEEEeCCCC-EEE
Q 043707          266 DCKCLESI---------------------------------------------NA-------HDDAINSVVAGFDS-LVF  292 (347)
Q Consensus       266 ~~~~~~~~---------------------------------------------~~-------h~~~v~~i~~~~~~-~l~  292 (347)
                      ...+ .+|                                             ..       -...++.+.++|.. +.+
T Consensus       427 ~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~  505 (577)
T KOG0642|consen  427 EESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITF  505 (577)
T ss_pred             CcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeE
Confidence            3322 000                                             00       01245667777775 889


Q ss_pred             EEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          293 TGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       293 s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      ++..|+.|+++|..++.      ++....+|...|+++++.|+|.+|++++.||
T Consensus       506 ~~hed~~Ir~~dn~~~~------~l~s~~a~~~svtslai~~ng~~l~s~s~d~  553 (577)
T KOG0642|consen  506 TAHEDRSIRFFDNKTGK------ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDG  553 (577)
T ss_pred             ecccCCceecccccccc------cchheeeccceecceeecCCCceEEeecCCc
Confidence            99999999999987543      6788889999999999999999999999997

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.75  E-value=2.2e-17  Score=149.26  Aligned_cols=185  Identities=15%  Similarity=0.215  Sum_probs=142.4

Q ss_pred             cCCEEEE--ecCCCcEEEEeCCCcce------eeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeec
Q 043707          132 SGDLLYT--GSDSKNIRVWKNLKEFS------GFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVG  202 (347)
Q Consensus       132 ~~~~l~t--g~~dg~I~vwd~~~~~~------~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~  202 (347)
                      +.++++.  .+..|.|-||++.+.-+      .-......|++++|.| |...|+.++.||.|++|.+..+.......  
T Consensus       590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~--  667 (1012)
T KOG1445|consen  590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEM--  667 (1012)
T ss_pred             ccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccC--
Confidence            3444443  35568999999664422      1122456899999999 88899999999999999998764321111  


Q ss_pred             ccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEE
Q 043707          203 SLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCKCLESINAHDDAIN  281 (347)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~  281 (347)
                                             .....+..|.+.|+.+.|+|- ...|++++.|-+|++||+++++....+.+|.+.|.
T Consensus       668 -----------------------tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf  724 (1012)
T KOG1445|consen  668 -----------------------TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIF  724 (1012)
T ss_pred             -----------------------CcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCcee
Confidence                                   112233369999999999994 67899999999999999999999999999999999


Q ss_pred             EEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhcc-CCcEEEEEEccCCCEEEEecCCC
Q 043707          282 SVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQ-ENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       282 ~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h-~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      .++|+|+| .+++.+.||+|+||..+....     +++.-.+. ...--.|.|.-+|++|++.|.|.
T Consensus       725 ~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~-----pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk  786 (1012)
T KOG1445|consen  725 GIAWSPDGRRIATVCKDGTLRVYEPRSREQ-----PVYEGKGPVGTRGARILWACDGRIVIVVGFDK  786 (1012)
T ss_pred             EEEECCCCcceeeeecCceEEEeCCCCCCC-----ccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence            99999999 999999999999999986543     33333222 23345688888999999988875

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.74  E-value=1.5e-16  Score=140.13  Aligned_cols=185  Identities=12%  Similarity=0.233  Sum_probs=151.2

Q ss_pred             eeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCCCc--ceeeecC-CCCeeEEEEeCCCC-EEEEEeCCCcEEEE
Q 043707          115 LIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE--FSGFKSN-SGLVKAIIITGDSN-KIFTGHQDGKIRIW  188 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~~~--~~~~~~h-~~~V~~l~~sp~~~-~l~s~~~Dg~I~vw  188 (347)
                      .++.+++|+..|+++.++  ..+||+++..|.|.|..+...  ...|..- ...|.-+.|+|..+ +|.+++.+|.|.+|
T Consensus       113 ~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtlw  192 (673)
T KOG4378|consen  113 IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLW  192 (673)
T ss_pred             HhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEE
Confidence            456788999999999975  569999999999999985533  3344433 34566899999655 57788999999999


Q ss_pred             ecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCC
Q 043707          189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDC  267 (347)
Q Consensus       189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwdl~~~  267 (347)
                      |+....+......                               .|..+...|+|+|. ..+|++.+.|+.|.+||.+..
T Consensus       193 Dv~g~sp~~~~~~-------------------------------~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~  241 (673)
T KOG4378|consen  193 DVQGMSPIFHASE-------------------------------AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ  241 (673)
T ss_pred             eccCCCcccchhh-------------------------------hccCCcCcceecCCccceEEEecccceEEEeecccc
Confidence            9988765443322                               38999999999995 668889999999999999987


Q ss_pred             EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCC
Q 043707          268 KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQES  336 (347)
Q Consensus       268 ~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~  336 (347)
                      +....+. .+.+...++|.++| +|++|...|.|..||++....     ++.++.+|...|++|+|-|.-
T Consensus       242 ~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~-----Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  242 ASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA-----PVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             cccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCC-----CceEeeecccceeEEEeeecc
Confidence            7776665 56789999999999 888999999999999996554     888999999999999998764

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=6.2e-17  Score=145.49  Aligned_cols=226  Identities=14%  Similarity=0.209  Sum_probs=158.4

Q ss_pred             eeEeeeeccccEEEEe--ecCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCC--EEEEEeC-------
Q 043707          115 LIGSIVRKEGHIYSLA--ASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSN--KIFTGHQ-------  181 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~--~~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~--~l~s~~~-------  181 (347)
                      +-..+++|++.|.|++  +.|.+|++|+.||+|+||.+.  +++..++ ..+.|.||+|+|.+.  .||++-.       
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn  470 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVN  470 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence            3445778999999987  568899999999999999954  4455544 346899999998653  2333222       


Q ss_pred             -------------------------CCcEEEEe------cCCCCCc------eeeeecccccccceEEeccC---CCeEE
Q 043707          182 -------------------------DGKIRIWK------VSRKNPS------VHKRVGSLPTFKDYVKSSVN---PKNYV  221 (347)
Q Consensus       182 -------------------------Dg~I~vwd------~~~~~~~------~~~~~~~~~~~~~~~~~~~~---~~~~~  221 (347)
                                               |+.+..|.      ...+-..      ....+........+......   ...++
T Consensus       471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli  550 (733)
T KOG0650|consen  471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI  550 (733)
T ss_pred             ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence                                     22334552      2322111      11111111122222222211   11222


Q ss_pred             -EEeecceee-eeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCC
Q 043707          222 -EVRRNRNVL-KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADG  298 (347)
Q Consensus       222 -~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg  298 (347)
                       ++.....+. +....+.|.++.|+|...+|++++. ..|+|||+...+.++.+......|..++.+|.| .|+.|+.|+
T Consensus       551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~  629 (733)
T KOG0650|consen  551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK  629 (733)
T ss_pred             EecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC
Confidence             222222222 2245677999999999999999884 689999999888787777777889999999987 899999999


Q ss_pred             cEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          299 TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       299 ~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      .+..||+....+     +.+.+.-|...|++|+|++.-.++++|+.||+
T Consensus       630 k~~WfDldlssk-----Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgt  673 (733)
T KOG0650|consen  630 KMCWFDLDLSSK-----PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGT  673 (733)
T ss_pred             eeEEEEcccCcc-----hhHHhhhhhhhhhhhhhccccceeeeecCCCc
Confidence            999999987666     88999999999999999999999999999985

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.73  E-value=1.4e-16  Score=136.77  Aligned_cols=160  Identities=16%  Similarity=0.225  Sum_probs=128.9

Q ss_pred             CcceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceee
Q 043707          152 KEFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVL  230 (347)
Q Consensus       152 ~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (347)
                      ...-.+.+|+++|.+++|+| +.+.||+|+.|.+|.||++-.+......                         ......
T Consensus        72 ~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l-------------------------tepvv~  126 (472)
T KOG0303|consen   72 ASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL-------------------------TEPVVE  126 (472)
T ss_pred             CCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc-------------------------ccceEE
Confidence            44556789999999999999 7789999999999999999765321111                         112344


Q ss_pred             eeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccC
Q 043707          231 KIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQ  308 (347)
Q Consensus       231 ~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~  308 (347)
                      +.+|...|--++|+|. .+.|++++.|.+|.+|++.+++.+.++. |.+-|.++.|+.|| +|++.+.|..|+|||.+.+
T Consensus       127 L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~  205 (472)
T KOG0303|consen  127 LYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG  205 (472)
T ss_pred             EeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCC
Confidence            5579999999999995 6789999999999999999999999988 99999999999998 9999999999999999865


Q ss_pred             CccceeeehhhhhccCC-cEEEEEEccCCCEEEEecC
Q 043707          309 GKGTKHFLAQVLLKQEN-AITALAVNQESAVVYCGSS  344 (347)
Q Consensus       309 ~~~~~~~~~~~~~~h~~-~V~~l~~~p~~~~l~sgs~  344 (347)
                      .      ++....+|.+ .-..+.|-.++. |++.|.
T Consensus       206 ~------~v~e~~~heG~k~~Raifl~~g~-i~tTGf  235 (472)
T KOG0303|consen  206 T------VVSEGVAHEGAKPARAIFLASGK-IFTTGF  235 (472)
T ss_pred             c------EeeecccccCCCcceeEEeccCc-eeeecc
Confidence            4      4555567754 355667777887 555543

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.73  E-value=8.2e-17  Score=146.89  Aligned_cols=203  Identities=19%  Similarity=0.280  Sum_probs=153.0

Q ss_pred             eEeeeeccccEEEEeec--CCEEEEecCCC-----cEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEE
Q 043707          116 IGSIVRKEGHIYSLAAS--GDLLYTGSDSK-----NIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIR  186 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~~--~~~l~tg~~dg-----~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~  186 (347)
                      ++.|-+|.-+|+|++.+  ++++|+++...     .|+||+..  .....+.+|+-.|+.|+|+||+++|++.+.|+++.
T Consensus       518 v~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~s  597 (764)
T KOG1063|consen  518 VHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVS  597 (764)
T ss_pred             hHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEE
Confidence            56777999999999865  88999997754     58999855  44557899999999999999999999999999999


Q ss_pred             EEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 043707          187 IWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD  266 (347)
Q Consensus       187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~  266 (347)
                      +|....... .......                           ...|..-|....|+|++.+++|+|.|++++||....
T Consensus       598 l~~~~~~~~-~e~~fa~---------------------------~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~  649 (764)
T KOG1063|consen  598 LYEVQEDIK-DEFRFAC---------------------------LKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPD  649 (764)
T ss_pred             eeeeecccc-hhhhhcc---------------------------ccccceEEEEcccCcccceeEEecCCceEEEEeccC
Confidence            998854321 1111110                           114899999999999999999999999999999987


Q ss_pred             C--EEEEEE--ecCCCcEEEEEeCCC-----C-EEEEEeCCCcEEEEEcccCCc---cceeee---hhhhhccCCcEEEE
Q 043707          267 C--KCLESI--NAHDDAINSVVAGFD-----S-LVFTGSADGTVKVWRRELQGK---GTKHFL---AQVLLKQENAITAL  330 (347)
Q Consensus       267 ~--~~~~~~--~~h~~~v~~i~~~~~-----~-~l~s~~~dg~I~vwd~~~~~~---~~~~~~---~~~~~~h~~~V~~l  330 (347)
                      .  +.+..+  ..+..+|+.+++.|-     + .++.|-..|.|.+|......+   ......   ......|...|+.+
T Consensus       650 ~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl  729 (764)
T KOG1063|consen  650 LRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRL  729 (764)
T ss_pred             chhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhhee
Confidence            7  544442  357889999998762     2 778888999999998652111   011112   22234567789999


Q ss_pred             EEccC----------CCEEEEecCCC
Q 043707          331 AVNQE----------SAVVYCGSSDG  346 (347)
Q Consensus       331 ~~~p~----------~~~l~sgs~DG  346 (347)
                      .|.|.          ...|++|++|-
T Consensus       730 ~w~p~~~~~~~~~~~~l~la~~g~D~  755 (764)
T KOG1063|consen  730 LWRPTCSDDWVEDKEWLNLAVGGDDE  755 (764)
T ss_pred             EeccccccccccccceeEEeeecccc
Confidence            99974          24568888874

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.73  E-value=8.4e-17  Score=145.61  Aligned_cols=184  Identities=13%  Similarity=0.200  Sum_probs=136.7

Q ss_pred             CCEEEEecCCCcEEEEeCCC--------cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeeccc
Q 043707          133 GDLLYTGSDSKNIRVWKNLK--------EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSL  204 (347)
Q Consensus       133 ~~~l~tg~~dg~I~vwd~~~--------~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~  204 (347)
                      ..+|+.+.+||.|.++|..+        .+..+..|..+|.++.|.|....|++++.|.++++||++..+....      
T Consensus        64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~------  137 (720)
T KOG0321|consen   64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGG------  137 (720)
T ss_pred             cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecc------
Confidence            34799999999999998432        2466788999999999999777899999999999999998753221      


Q ss_pred             ccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCE---------------
Q 043707          205 PTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCK---------------  268 (347)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwdl~~~~---------------  268 (347)
                                              .+.++|...|.+++|.+. ...+++|+.||.|.|||++-..               
T Consensus       138 ------------------------~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~  193 (720)
T KOG0321|consen  138 ------------------------RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRH  193 (720)
T ss_pred             ------------------------eeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccc
Confidence                                    123479999999999995 6789999999999999997321               


Q ss_pred             -----E-------EEEEecCCC----cEEEEEeCCCCEEEEEeC-CCcEEEEEcccCCccceeeehhhhhc--c---CCc
Q 043707          269 -----C-------LESINAHDD----AINSVVAGFDSLVFTGSA-DGTVKVWRRELQGKGTKHFLAQVLLK--Q---ENA  326 (347)
Q Consensus       269 -----~-------~~~~~~h~~----~v~~i~~~~~~~l~s~~~-dg~I~vwd~~~~~~~~~~~~~~~~~~--h---~~~  326 (347)
                           +       +..-+++..    .|+.+.|-.+..||+++. |+.|+|||++.........+.....-  |   .-.
T Consensus       194 n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G  273 (720)
T KOG0321|consen  194 NTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVG  273 (720)
T ss_pred             cCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceee
Confidence                 0       111123333    355566766668998887 99999999997655444344333322  3   336


Q ss_pred             EEEEEEccCCCEEEEecCCC
Q 043707          327 ITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       327 V~~l~~~p~~~~l~sgs~DG  346 (347)
                      ++++.....|.+|.+.+.|+
T Consensus       274 ~~nL~lDssGt~L~AsCtD~  293 (720)
T KOG0321|consen  274 QVNLILDSSGTYLFASCTDN  293 (720)
T ss_pred             eEEEEecCCCCeEEEEecCC
Confidence            78888888888887777786

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.72  E-value=4.6e-15  Score=138.21  Aligned_cols=236  Identities=16%  Similarity=0.239  Sum_probs=169.7

Q ss_pred             ccceeEeeeeccccEEEEeecC--CEEEEecCCCcEEEEeC--CCcceeeecCCCCeeEEEEeCCCCE-EEEEeCCCcEE
Q 043707          112 CNGLIGSIVRKEGHIYSLAASG--DLLYTGSDSKNIRVWKN--LKEFSGFKSNSGLVKAIIITGDSNK-IFTGHQDGKIR  186 (347)
Q Consensus       112 ~~~~i~~l~~h~~~V~~l~~~~--~~l~tg~~dg~I~vwd~--~~~~~~~~~h~~~V~~l~~sp~~~~-l~s~~~Dg~I~  186 (347)
                      .++++.+++++...|+++...+  +.++.|..+|+|.|+++  .+.+..|+...+.|+.+.|.-||+. +++|+..|.+.
T Consensus       191 t~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~  270 (910)
T KOG1539|consen  191 TGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMA  270 (910)
T ss_pred             cCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEE
Confidence            4568999999999999999775  58999999999999995  4667777766799999999998875 66677779999


Q ss_pred             EEecCCCCCceeeeecc---------cccccceEEeccC------------------------------------CCeEE
Q 043707          187 IWKVSRKNPSVHKRVGS---------LPTFKDYVKSSVN------------------------------------PKNYV  221 (347)
Q Consensus       187 vwd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~------------------------------------~~~~~  221 (347)
                      +||++.++.........         ++...-++....+                                    ....+
T Consensus       271 ~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~i  350 (910)
T KOG1539|consen  271 FWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFI  350 (910)
T ss_pred             EEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEE
Confidence            99999876432221100         0000000000000                                    00000


Q ss_pred             --------------------------------------------------------------------------EEeecc
Q 043707          222 --------------------------------------------------------------------------EVRRNR  227 (347)
Q Consensus       222 --------------------------------------------------------------------------~~~~~~  227 (347)
                                                                                                ..+..+
T Consensus       351 lsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~  430 (910)
T KOG1539|consen  351 LSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFR  430 (910)
T ss_pred             EecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEecc
Confidence                                                                                      000000


Q ss_pred             e----eeeeecC------CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEE---ecCCCcEEEEEeCCCC-EEEE
Q 043707          228 N----VLKIRHY------DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI---NAHDDAINSVVAGFDS-LVFT  293 (347)
Q Consensus       228 ~----~~~~~h~------~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~---~~h~~~v~~i~~~~~~-~l~s  293 (347)
                      .    .....+.      ..+++++.++-|++.+.|...|+|-+|++..|-...+|   .+|+.+|+.++...-+ .+++
T Consensus       431 n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vs  510 (910)
T KOG1539|consen  431 NKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVS  510 (910)
T ss_pred             CcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEE
Confidence            0    0001122      45788888999999999999999999999999998888   5899999999986544 8999


Q ss_pred             EeCCCcEEEEEcccCCc-----------------------------------cceeeehhhhhccCCcEEEEEEccCCCE
Q 043707          294 GSADGTVKVWRRELQGK-----------------------------------GTKHFLAQVLLKQENAITALAVNQESAV  338 (347)
Q Consensus       294 ~~~dg~I~vwd~~~~~~-----------------------------------~~~~~~~~~~~~h~~~V~~l~~~p~~~~  338 (347)
                      ++.+|.+++||......                                   ...+..++.+.+|...|++++|+|||++
T Consensus       511 a~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrW  590 (910)
T KOG1539|consen  511 AGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRW  590 (910)
T ss_pred             ccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcE
Confidence            99999999999874321                                   0112245667889999999999999999


Q ss_pred             EEEecCCCC
Q 043707          339 VYCGSSDGL  347 (347)
Q Consensus       339 l~sgs~DG~  347 (347)
                      |++++.|++
T Consensus       591 lisasmD~t  599 (910)
T KOG1539|consen  591 LISASMDST  599 (910)
T ss_pred             EEEeecCCc
Confidence            999999985

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.72  E-value=2.7e-16  Score=130.05  Aligned_cols=193  Identities=12%  Similarity=0.114  Sum_probs=147.0

Q ss_pred             ccccEEEEeec---CCEEEEecCCCcEEEEeCCCc-----ceeeecCCCCeeEEEEeCCC-CEEEEEeCCCcEEEEecCC
Q 043707          122 KEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLKE-----FSGFKSNSGLVKAIIITGDS-NKIFTGHQDGKIRIWKVSR  192 (347)
Q Consensus       122 h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~~~-----~~~~~~h~~~V~~l~~sp~~-~~l~s~~~Dg~I~vwd~~~  192 (347)
                      +.+++++++|+   .+++.+.+-|.+..|||+...     ...+..|...|.+|+|...+ +.|++.+.||.||++|++.
T Consensus       149 ~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~  228 (364)
T KOG0290|consen  149 FCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRS  228 (364)
T ss_pred             cCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecc
Confidence            45678889885   779999999999999997654     44677899999999999844 5799999999999999998


Q ss_pred             CCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCC-CcEEEEeCCCC-EE
Q 043707          193 KNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWD-KTLKVWRISDC-KC  269 (347)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~d-g~i~vwdl~~~-~~  269 (347)
                      .+......-.  |                           .-..+...++|+++ -+++++-..| ..|.|.|+|.. .+
T Consensus       229 leHSTIIYE~--p---------------------------~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tp  279 (364)
T KOG0290|consen  229 LEHSTIIYED--P---------------------------SPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTP  279 (364)
T ss_pred             cccceEEecC--C---------------------------CCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcc
Confidence            7532222111  0                           02456778899884 6777776554 56999999865 57


Q ss_pred             EEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEcc-CCCEEEEecC
Q 043707          270 LESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQ-ESAVVYCGSS  344 (347)
Q Consensus       270 ~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~sgs~  344 (347)
                      +..++.|++.|+.|+|.|..  .|.+++.|.++-+||+....+....-+.-... ..+.|+.|.|++ ....|+.+..
T Consensus       280 va~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  280 VARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG  356 (364)
T ss_pred             eehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEec
Confidence            89999999999999999975  99999999999999998654311111222222 467899999996 4578877754

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.72  E-value=9.2e-16  Score=139.68  Aligned_cols=238  Identities=16%  Similarity=0.242  Sum_probs=157.3

Q ss_pred             CCCCCCccccc------------ccceeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCCcceeeecCCCCeeE
Q 043707          101 PYSPNENLLSS------------CNGLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKA  166 (347)
Q Consensus       101 ~~~p~~~~~~~------------~~~~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~  166 (347)
                      .|.|+|..+..            .++++.++++|++.|+|+++  +|+++++|+.|+.|.+|...-+-..-..|...|.|
T Consensus        19 afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQC   98 (1081)
T KOG1538|consen   19 AFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQC   98 (1081)
T ss_pred             EECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeE
Confidence            67788764322            24588999999999999997  58999999999999999744322222346666666


Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeec------ccccccceEEeccCCCeEEEEeecceeeee----ecCC
Q 043707          167 IIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVG------SLPTFKDYVKSSVNPKNYVEVRRNRNVLKI----RHYD  236 (347)
Q Consensus       167 l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~h~~  236 (347)
                      +.|+|-...|++|+.. ..-+|....+.....+...      .......+.....++..-+.-...+....+    +.+.
T Consensus        99 MsFNP~~h~LasCsLs-dFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Ns  177 (1081)
T KOG1538|consen   99 MSFNPITHQLASCSLS-DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNS  177 (1081)
T ss_pred             eecCchHHHhhhcchh-hccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCC
Confidence            6666655566666543 3445555443322211111      011112222222222222222222222222    3678


Q ss_pred             CeeEEEEcCC-----CCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCc
Q 043707          237 AVSCLSLNAE-----QGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGK  310 (347)
Q Consensus       237 ~V~~l~~~~~-----~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~  310 (347)
                      +|.+++|+|.     ...+++..+..++.+|.+. |+.+..-+.-.-...|+.+.++| +++.|+.|+.+++|..+  + 
T Consensus       178 piwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~--G-  253 (1081)
T KOG1538|consen  178 PIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD--G-  253 (1081)
T ss_pred             CceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec--C-
Confidence            8999999996     2578999999999999884 56555433333345678888887 99999999999999775  2 


Q ss_pred             cceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          311 GTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       311 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                          ..+.++.....+|+.++..|+++.++.|+.|||
T Consensus       254 ----vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGT  286 (1081)
T KOG1538|consen  254 ----VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGT  286 (1081)
T ss_pred             ----eEEeeccccceeEEEEEEccCCceEEEEEccCe
Confidence                245566667889999999999999999999997

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=5.6e-16  Score=130.84  Aligned_cols=179  Identities=15%  Similarity=0.346  Sum_probs=139.1

Q ss_pred             CEEEEecCCCcEEEEeCCC--cceeeecCCCCeeEEEEeC--CCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccc
Q 043707          134 DLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIITG--DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKD  209 (347)
Q Consensus       134 ~~l~tg~~dg~I~vwd~~~--~~~~~~~h~~~V~~l~~sp--~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~  209 (347)
                      ..+|++...|.|++||..+  .+..|+++...+..++|..  ....+.+|+.||+||+||++...........       
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~-------  113 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT-------  113 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc-------
Confidence            5788999999999999654  7889999999999999977  4668999999999999999987654433322       


Q ss_pred             eEEeccCCCeEEEEeecceeeeeecC-CCeeEEEEcCCCCEEEEEeC----CCcEEEEeCCCCEE-EEEE-ecCCCcEEE
Q 043707          210 YVKSSVNPKNYVEVRRNRNVLKIRHY-DAVSCLSLNAEQGLLYSGSW----DKTLKVWRISDCKC-LESI-NAHDDAINS  282 (347)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~s~----dg~i~vwdl~~~~~-~~~~-~~h~~~v~~  282 (347)
                                             ++. .+..|++.+-.++++++|..    |-.+.+||+|..+. +..+ ..|.+.|++
T Consensus       114 -----------------------~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~  170 (376)
T KOG1188|consen  114 -----------------------QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQ  170 (376)
T ss_pred             -----------------------CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCccee
Confidence                                   233 45677777767788888764    67799999998776 5554 689999999


Q ss_pred             EEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCC-CEEEEecCC
Q 043707          283 VVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQES-AVVYCGSSD  345 (347)
Q Consensus       283 i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~-~~l~sgs~D  345 (347)
                      |.|+|..  +|++|+.||.|.|||+.....  .. .+.....|...|..+.|.-++ +.|.+-+.+
T Consensus       171 lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E--eD-aL~~viN~~sSI~~igw~~~~ykrI~clTH~  233 (376)
T KOG1188|consen  171 LRFHPSDPNLLLSGSVDGLVNLFDTKKDNE--ED-ALLHVINHGSSIHLIGWLSKKYKRIMCLTHM  233 (376)
T ss_pred             EEecCCCCCeEEeecccceEEeeecCCCcc--hh-hHHHhhcccceeeeeeeecCCcceEEEEEcc
Confidence            9999975  999999999999999974422  22 333445678889999999877 445554443

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=1.2e-15  Score=139.01  Aligned_cols=199  Identities=18%  Similarity=0.200  Sum_probs=151.3

Q ss_pred             eeccccEEEEee--cCCEEEEecCCCcEEEEeCCCc----ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 043707          120 VRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKE----FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRK  193 (347)
Q Consensus       120 ~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~~----~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~  193 (347)
                      ....+.|++++.  .++.++.|++||.++.++....    ...+.-.++.|.++.|+|++..|++|+.||.|++||+..+
T Consensus       107 d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~  186 (691)
T KOG2048|consen  107 DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSG  186 (691)
T ss_pred             cCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCC
Confidence            334456877774  5779999999997777775433    2334445789999999999999999999999999999988


Q ss_pred             CCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEE
Q 043707          194 NPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI  273 (347)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~  273 (347)
                      ........+...                        +..+...-|+++.|-.+ ..|++|..-|+|++||...+..++.+
T Consensus       187 ~t~~~~~~~~d~------------------------l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~  241 (691)
T KOG2048|consen  187 QTLHIITMQLDR------------------------LSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSH  241 (691)
T ss_pred             ceEEEeeecccc------------------------cccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhh
Confidence            644311111000                        00012234667776644 57999999999999999999999999


Q ss_pred             ecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          274 NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       274 ~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      ..|++.|.+++..+++ ++++++.|+.|.-|.....+.  .+........|...|.+++..++  .|++||.|++
T Consensus       242 ~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~--~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~  312 (691)
T KOG2048|consen  242 SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS--EWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFT  312 (691)
T ss_pred             hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc--ceeeeccccCCcccceeeeeecc--eEEecceeeE
Confidence            9999999999999885 999999999999998875543  24444555678889999999876  8999998864

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=2.4e-16  Score=136.50  Aligned_cols=186  Identities=19%  Similarity=0.213  Sum_probs=134.7

Q ss_pred             cEEEEeecCCEEEEecCCCcEEEEeCCC--cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeec
Q 043707          125 HIYSLAASGDLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVG  202 (347)
Q Consensus       125 ~V~~l~~~~~~l~tg~~dg~I~vwd~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~  202 (347)
                      .+.++..+|..|++|+.||++|||+...  .......|.+.|.++.|+|||+.|++-+.| ..+||+++++.........
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            5667777889999999999999999553  345567789999999999999999999999 9999999998543322211


Q ss_pred             ccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCC---CE--EEEEeCCCcEEEEeCCCCE-----EEEE
Q 043707          203 SLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ---GL--LYSGSWDKTLKVWRISDCK-----CLES  272 (347)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~---~~--l~s~s~dg~i~vwdl~~~~-----~~~~  272 (347)
                                                    ........+.|..++   .+  ++....-+.|+.||+...+     ...+
T Consensus       227 ------------------------------~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~  276 (398)
T KOG0771|consen  227 ------------------------------SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRK  276 (398)
T ss_pred             ------------------------------ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhh
Confidence                                          122334455666554   22  2222334556666654322     1122


Q ss_pred             EecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          273 INAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       273 ~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      .-.-...|.+++.+++| +++.|+.||.|-|++....+.     ....-..|...|+.|.|+|+.+++++-+.|.
T Consensus       277 ~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~-----~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~  346 (398)
T KOG0771|consen  277 KIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQR-----LQYVKEAHLGFVTGLTFSPDSRYLASVSSDN  346 (398)
T ss_pred             hhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeee-----eEeehhhheeeeeeEEEcCCcCcccccccCC
Confidence            22234469999999998 888999999999999975443     4445567999999999999999998877653

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=1.3e-15  Score=123.19  Aligned_cols=190  Identities=22%  Similarity=0.327  Sum_probs=134.5

Q ss_pred             EEeecCCEEEEecCCCcEEEEeCC------------CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCC
Q 043707          128 SLAASGDLLYTGSDSKNIRVWKNL------------KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNP  195 (347)
Q Consensus       128 ~l~~~~~~l~tg~~dg~I~vwd~~------------~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~  195 (347)
                      ++++.+++|+.|..+|.|-+..+.            ..+..+++|.++|+.++|..+  .|++|+ ||.|+-|..+....
T Consensus        17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~--~Lls~g-dG~V~gw~W~E~~e   93 (325)
T KOG0649|consen   17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD--FLLSGG-DGLVYGWEWNEEEE   93 (325)
T ss_pred             hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh--heeecc-CceEEEeeehhhhh
Confidence            567788999999999999999632            224456899999999999844  777777 59999998765432


Q ss_pred             c-eeeeecc--cccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEE
Q 043707          196 S-VHKRVGS--LPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES  272 (347)
Q Consensus       196 ~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~  272 (347)
                      . ..+..-.  .|...+                      .-.--.|+.|.+.|..+-++.++.|+.++.||+++|+....
T Consensus        94 s~~~K~lwe~~~P~~~~----------------------~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~  151 (325)
T KOG0649|consen   94 SLATKRLWEVKIPMQVD----------------------AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQRE  151 (325)
T ss_pred             hccchhhhhhcCccccC----------------------cccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEE
Confidence            1 1111000  000000                      00224588999999877777777899999999999999999


Q ss_pred             EecCCCcEEEEEe-CCCCEEEEEeCCCcEEEEEcccCCccceee---ehhhhhcc-CCcEEEEEEccCCCEEEEecC
Q 043707          273 INAHDDAINSVVA-GFDSLVFTGSADGTVKVWRRELQGKGTKHF---LAQVLLKQ-ENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       273 ~~~h~~~v~~i~~-~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~---~~~~~~~h-~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      +++|.+.|.+++- +..+.+++|++||++||||+++++......   -...+..| ..+|-+++.+  ..+|++|+-
T Consensus       152 ~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGgG  226 (325)
T KOG0649|consen  152 YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGGG  226 (325)
T ss_pred             EcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecCC
Confidence            9999999999987 445699999999999999999765411111   12233334 3467777764  567777653

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.70  E-value=4.3e-16  Score=137.34  Aligned_cols=176  Identities=15%  Similarity=0.205  Sum_probs=143.6

Q ss_pred             CCEEEEecCCCcEEEEeCCCc--ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccce
Q 043707          133 GDLLYTGSDSKNIRVWKNLKE--FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDY  210 (347)
Q Consensus       133 ~~~l~tg~~dg~I~vwd~~~~--~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~  210 (347)
                      ..++++|+..+.|+|||+...  .+.+++|+..|+++.++....+|++++..|.|.|-.+.++........         
T Consensus        91 S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~---------  161 (673)
T KOG4378|consen   91 SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI---------  161 (673)
T ss_pred             ceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec---------
Confidence            468999999999999997633  567789999999999999888999999999999999988764332221         


Q ss_pred             EEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCEEEEEE-ecCCCcEEEEEeCCC
Q 043707          211 VKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ-GLLYSGSWDKTLKVWRISDCKCLESI-NAHDDAINSVVAGFD  288 (347)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~dg~i~vwdl~~~~~~~~~-~~h~~~v~~i~~~~~  288 (347)
                                            .....|+-+.+++.. .+|.+++.+|.+.+||+....++..+ +.|..+...|+|+|.
T Consensus       162 ----------------------~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfsps  219 (673)
T KOG4378|consen  162 ----------------------DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPS  219 (673)
T ss_pred             ----------------------CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCC
Confidence                                  134556789999965 46777899999999999888777665 689999999999997


Q ss_pred             C--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          289 S--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       289 ~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      .  +|++.+.|..|.+||.+...      .... .....+...|+|.++|-+|++|...|
T Consensus       220 ne~l~vsVG~Dkki~~yD~~s~~------s~~~-l~y~~Plstvaf~~~G~~L~aG~s~G  272 (673)
T KOG4378|consen  220 NEALLVSVGYDKKINIYDIRSQA------STDR-LTYSHPLSTVAFSECGTYLCAGNSKG  272 (673)
T ss_pred             ccceEEEecccceEEEeeccccc------ccce-eeecCCcceeeecCCceEEEeecCCc
Confidence            6  89999999999999998432      1222 23456899999999999999998876

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=2.8e-15  Score=125.04  Aligned_cols=161  Identities=13%  Similarity=0.200  Sum_probs=123.0

Q ss_pred             ecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCC
Q 043707          158 KSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA  237 (347)
Q Consensus       158 ~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  237 (347)
                      .+|...|.++.|.+.|+.+++|+.|++|+|||.+........                            ...+..|.+.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~----------------------------Ts~Wrah~~S   61 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSC----------------------------TSSWRAHDGS   61 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEE----------------------------eeeEEecCCc
Confidence            468899999999999999999999999999998655322111                            1123359999


Q ss_pred             eeEEEEcC--CCCEEEEEeCCCcEEEEeCC---------CCEEEEEEecCCCcEEEEEeCCCC---EEEEEeCCCcEEEE
Q 043707          238 VSCLSLNA--EQGLLYSGSWDKTLKVWRIS---------DCKCLESINAHDDAINSVVAGFDS---LVFTGSADGTVKVW  303 (347)
Q Consensus       238 V~~l~~~~--~~~~l~s~s~dg~i~vwdl~---------~~~~~~~~~~h~~~v~~i~~~~~~---~l~s~~~dg~I~vw  303 (347)
                      |..+.|.+  -|+.+++++.|+++.||.-.         ......++......|+.|.|.|..   .+|+++.||.||||
T Consensus        62 i~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIY  141 (361)
T KOG2445|consen   62 IWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIY  141 (361)
T ss_pred             EEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEE
Confidence            99999976  38999999999999999852         223455666677889999999974   89999999999999


Q ss_pred             EcccCCc-------------------------------------------------------------cceeeehhhhhc
Q 043707          304 RRELQGK-------------------------------------------------------------GTKHFLAQVLLK  322 (347)
Q Consensus       304 d~~~~~~-------------------------------------------------------------~~~~~~~~~~~~  322 (347)
                      +......                                                             ..+...+..+.+
T Consensus       142 EA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d  221 (361)
T KOG2445|consen  142 EAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD  221 (361)
T ss_pred             ecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence            8752211                                                             112333445667


Q ss_pred             cCCcEEEEEEccCC----CEEEEecCCC
Q 043707          323 QENAITALAVNQES----AVVYCGSSDG  346 (347)
Q Consensus       323 h~~~V~~l~~~p~~----~~l~sgs~DG  346 (347)
                      |..+|++|+|.|+-    .+||+++.||
T Consensus       222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg  249 (361)
T KOG2445|consen  222 HTDPIRDISWAPNIGRSYHLLAVATKDG  249 (361)
T ss_pred             CCCcceeeeeccccCCceeeEEEeecCc
Confidence            88888999998863    5788888887

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.69  E-value=2.7e-14  Score=126.29  Aligned_cols=224  Identities=13%  Similarity=0.105  Sum_probs=136.2

Q ss_pred             eeEeeeecccc-EEEEeecCCEE-EEecCCCcEEEEeCCC--cceeeecCCCCeeEEEEeCCCCEEEEE-eCCCcEEEEe
Q 043707          115 LIGSIVRKEGH-IYSLAASGDLL-YTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIITGDSNKIFTG-HQDGKIRIWK  189 (347)
Q Consensus       115 ~i~~l~~h~~~-V~~l~~~~~~l-~tg~~dg~I~vwd~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~-~~Dg~I~vwd  189 (347)
                      .+..+..+... -.++.++++.+ ++++.++.|++||...  ....+..+. .+..++|+|+++.++++ ..|+.|++||
T Consensus        23 ~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d  101 (300)
T TIGR03866        23 VTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVID  101 (300)
T ss_pred             eEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEE
Confidence            34455444332 13444567765 6778899999999653  233344433 35688999999877654 5689999999


Q ss_pred             cCCCCCceeeeecc-------cccccceEEeccCCCeE--EEEeecceeeeeecCCCeeEEEEcCCCCEEEEE-eCCCcE
Q 043707          190 VSRKNPSVHKRVGS-------LPTFKDYVKSSVNPKNY--VEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSG-SWDKTL  259 (347)
Q Consensus       190 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~dg~i  259 (347)
                      +++.+.........       .+....++....+....  +................+.+++|++++.+|+.+ ..++.|
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v  181 (300)
T TIGR03866       102 IETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTV  181 (300)
T ss_pred             CCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEE
Confidence            98765332222111       11122222222222111  122111121122234456789999999988655 469999


Q ss_pred             EEEeCCCCEEEEEEecCCC-------cEEEEEeCCCC-E-EEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEE
Q 043707          260 KVWRISDCKCLESINAHDD-------AINSVVAGFDS-L-VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITAL  330 (347)
Q Consensus       260 ~vwdl~~~~~~~~~~~h~~-------~v~~i~~~~~~-~-l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l  330 (347)
                      ++||+++++.+..+..+..       ....+.|+|++ + +++.+.++.|.+||++....      ...+ .+...+.++
T Consensus       182 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~------~~~~-~~~~~~~~~  254 (300)
T TIGR03866       182 SVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEV------LDYL-LVGQRVWQL  254 (300)
T ss_pred             EEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcE------EEEE-EeCCCcceE
Confidence            9999999988777653321       23467899988 4 34455677899999974332      1111 234578999


Q ss_pred             EEccCCCEEEEec-CCC
Q 043707          331 AVNQESAVVYCGS-SDG  346 (347)
Q Consensus       331 ~~~p~~~~l~sgs-~DG  346 (347)
                      +|+|++++|++++ .+|
T Consensus       255 ~~~~~g~~l~~~~~~~~  271 (300)
T TIGR03866       255 AFTPDEKYLLTTNGVSN  271 (300)
T ss_pred             EECCCCCEEEEEcCCCC
Confidence            9999999998864 454

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.68  E-value=2.6e-15  Score=125.84  Aligned_cols=200  Identities=14%  Similarity=0.168  Sum_probs=154.1

Q ss_pred             eeeccccEEEEeec--CCEEEEecCCCcEEEEeC-----CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecC
Q 043707          119 IVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKN-----LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVS  191 (347)
Q Consensus       119 l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~-----~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~  191 (347)
                      +..-..+|+|.+|+  +..+|.+..+..|.||..     -+...++..|...|++|.|+|..+.|++|+.|..-+||...
T Consensus         6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~   85 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP   85 (361)
T ss_pred             eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence            33345689999985  558999999999999973     35577889999999999999999999999999999999985


Q ss_pred             CCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEE-
Q 043707          192 RKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL-  270 (347)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~-  270 (347)
                      .+..-                             .....+.+++..++|+.|+|.++.+++|+..+.|-||-++...-- 
T Consensus        86 ~~~~W-----------------------------kptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWW  136 (361)
T KOG1523|consen   86 SGGTW-----------------------------KPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWW  136 (361)
T ss_pred             CCCee-----------------------------ccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccccee
Confidence            43210                             011223468999999999999999999999999999988654321 


Q ss_pred             ---EEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccce------------eeehhhhhccCCcEEEEEEcc
Q 043707          271 ---ESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTK------------HFLAQVLLKQENAITALAVNQ  334 (347)
Q Consensus       271 ---~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~------------~~~~~~~~~h~~~V~~l~~~p  334 (347)
                         +.-+.+...|.++.|+|++ +|++|+.|+..+||..-..+..++            ..+...+....+.|..+.|+|
T Consensus       137 VsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~  216 (361)
T KOG1523|consen  137 VSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP  216 (361)
T ss_pred             hhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC
Confidence               2234567889999999999 888999999999997653221100            112223334567899999999


Q ss_pred             CCCEEEEecCCCC
Q 043707          335 ESAVVYCGSSDGL  347 (347)
Q Consensus       335 ~~~~l~sgs~DG~  347 (347)
                      +|..|+-.+.|++
T Consensus       217 sG~~lawv~Hds~  229 (361)
T KOG1523|consen  217 SGNRLAWVGHDST  229 (361)
T ss_pred             CCCEeeEecCCCc
Confidence            9999998888864

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.68  E-value=1.6e-15  Score=125.80  Aligned_cols=170  Identities=19%  Similarity=0.256  Sum_probs=131.1

Q ss_pred             ceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeee
Q 043707          154 FSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKI  232 (347)
Q Consensus       154 ~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (347)
                      ......|.+.|+.+.+.+ +|+++++|+.||.|.|||++..........-  .....               .-......
T Consensus        36 ~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li--~k~~c---------------~v~~~h~~   98 (397)
T KOG4283|consen   36 KDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLI--AKHKC---------------IVAKQHEN   98 (397)
T ss_pred             cceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccce--eheee---------------eccccCCc
Confidence            334467899999999998 8999999999999999999865411100000  00000               00111122


Q ss_pred             ecCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC----EEEEEeCCCcEEEEEccc
Q 043707          233 RHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS----LVFTGSADGTVKVWRREL  307 (347)
Q Consensus       233 ~h~~~V~~l~~~~-~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~----~l~s~~~dg~I~vwd~~~  307 (347)
                      +|...|..+.|-| |...+.+++.|.+++|||..+.+....|+ -++.|.+-+++|-.    ++|+|..|-+|++.|+..
T Consensus        99 ~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S  177 (397)
T KOG4283|consen   99 GHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS  177 (397)
T ss_pred             cceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccC
Confidence            5888999999999 67788889999999999999999888887 45678888888843    888999999999999985


Q ss_pred             CCccceeeehhhhhccCCcEEEEEEccCCC-EEEEecCCCC
Q 043707          308 QGKGTKHFLAQVLLKQENAITALAVNQESA-VVYCGSSDGL  347 (347)
Q Consensus       308 ~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~l~sgs~DG~  347 (347)
                      +.      ..+.+.+|...|.+|.|+|... .|++|+.||.
T Consensus       178 Gs------~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~  212 (397)
T KOG4283|consen  178 GS------FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA  212 (397)
T ss_pred             Cc------ceeeeccccCceEEEEeccCceeEEEecCCCce
Confidence            54      6889999999999999999775 5788999984

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=6.5e-16  Score=130.43  Aligned_cols=165  Identities=16%  Similarity=0.202  Sum_probs=124.1

Q ss_pred             cceeEeeeeccccEEEEee----cCCEEEEecCCCcEEEEeCCC----cceeeecCC-CCeeEEEEeCCCCEEEEEe---
Q 043707          113 NGLIGSIVRKEGHIYSLAA----SGDLLYTGSDSKNIRVWKNLK----EFSGFKSNS-GLVKAIIITGDSNKIFTGH---  180 (347)
Q Consensus       113 ~~~i~~l~~h~~~V~~l~~----~~~~l~tg~~dg~I~vwd~~~----~~~~~~~h~-~~V~~l~~sp~~~~l~s~~---  180 (347)
                      .+++..+++|.+.+..+.+    .+..+.+|+.||+|++||+..    ....+..|. .+-.|++....++.+++|.   
T Consensus        60 g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~  139 (376)
T KOG1188|consen   60 GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELT  139 (376)
T ss_pred             hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccc
Confidence            3467778888887777765    356999999999999999542    233445555 4667777776777888875   


Q ss_pred             -CCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCc
Q 043707          181 -QDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKT  258 (347)
Q Consensus       181 -~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~  258 (347)
                       .|-.|.+||++..++.......                              .|.+.|+++.|+|. .++|++|+.||.
T Consensus       140 ~s~A~v~lwDvR~~qq~l~~~~e------------------------------SH~DDVT~lrFHP~~pnlLlSGSvDGL  189 (376)
T KOG1188|consen  140 RSDASVVLWDVRSEQQLLRQLNE------------------------------SHNDDVTQLRFHPSDPNLLLSGSVDGL  189 (376)
T ss_pred             cCceEEEEEEeccccchhhhhhh------------------------------hccCcceeEEecCCCCCeEEeecccce
Confidence             4667999999988653221111                              49999999999994 789999999999


Q ss_pred             EEEEeCCCCE---EEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEccc
Q 043707          259 LKVWRISDCK---CLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRREL  307 (347)
Q Consensus       259 i~vwdl~~~~---~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~  307 (347)
                      +.|+|++...   .+...-.|...|.++.|..++  .|.+-+...+..+|+++.
T Consensus       190 vnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~  243 (376)
T KOG1188|consen  190 VNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELED  243 (376)
T ss_pred             EEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccC
Confidence            9999997542   233333467778899998877  788888899999998874

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.67  E-value=8.3e-15  Score=136.57  Aligned_cols=221  Identities=18%  Similarity=0.176  Sum_probs=156.2

Q ss_pred             cccEEEEee---cCCEEEEecCCCcEEEEeCCCcce--------eeecCCCCeeEEEEeCCC--CEEEEEeCCCcEEEEe
Q 043707          123 EGHIYSLAA---SGDLLYTGSDSKNIRVWKNLKEFS--------GFKSNSGLVKAIIITGDS--NKIFTGHQDGKIRIWK  189 (347)
Q Consensus       123 ~~~V~~l~~---~~~~l~tg~~dg~I~vwd~~~~~~--------~~~~h~~~V~~l~~sp~~--~~l~s~~~Dg~I~vwd  189 (347)
                      ...|+|+.+   ++.+|+.|..+|.|.+||+.....        ....|..+|..+.|..+.  ..|++++.||.|..|+
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~  321 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD  321 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence            346777775   578999999999999999654322        233588999999997744  4599999999999998


Q ss_pred             cCCCCCceee--------------------eecccccccceEEeccCCCeEEEEee-cc----------eeeeeecCCCe
Q 043707          190 VSRKNPSVHK--------------------RVGSLPTFKDYVKSSVNPKNYVEVRR-NR----------NVLKIRHYDAV  238 (347)
Q Consensus       190 ~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------~~~~~~h~~~V  238 (347)
                      ++.-......                    .+...+.....+..+...+.+....+ +.          ......|.+.|
T Consensus       322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v  401 (555)
T KOG1587|consen  322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV  401 (555)
T ss_pred             ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence            8764331110                    11111222222333333333333111 11          11234588999


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEeCC-CCEEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceee
Q 043707          239 SCLSLNAEQGLLYSGSWDKTLKVWRIS-DCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHF  315 (347)
Q Consensus       239 ~~l~~~~~~~~l~s~s~dg~i~vwdl~-~~~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~  315 (347)
                      +++.++|-+..++..+.|.+++||... ...++..+..+...|.+++|+|-.  .|+++..||.|.+||+.....    .
T Consensus       402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~----~  477 (555)
T KOG1587|consen  402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE----E  477 (555)
T ss_pred             EeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc----C
Confidence            999999976655555559999999988 778888888888889999999976  899999999999999985433    2


Q ss_pred             ehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          316 LAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       316 ~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      +......+....+.+.|+++|+.|++|...|.
T Consensus       478 Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~  509 (555)
T KOG1587|consen  478 PVLSQKVCSPALTRVRWSPNGKLLAVGDANGT  509 (555)
T ss_pred             CcccccccccccceeecCCCCcEEEEecCCCc
Confidence            34444444667788889999999999998873

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.67  E-value=2.2e-15  Score=134.15  Aligned_cols=194  Identities=19%  Similarity=0.196  Sum_probs=135.9

Q ss_pred             CEEEEecCCCcEEEEe-CCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCC-------ceeeeecccc
Q 043707          134 DLLYTGSDSKNIRVWK-NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNP-------SVHKRVGSLP  205 (347)
Q Consensus       134 ~~l~tg~~dg~I~vwd-~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~-------~~~~~~~~~~  205 (347)
                      +.|+.++.||.+.|.+ ..+.-+....|.++|.+-.|+|+|.-|+++++||.|++|.-...-.       .....+...|
T Consensus        76 d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p  155 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAP  155 (737)
T ss_pred             ceEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECC
Confidence            3677778888888886 3444556778888888889999988899999999999996543210       1111112222


Q ss_pred             cccceEEeccCCCeEEEEe-ecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEE
Q 043707          206 TFKDYVKSSVNPKNYVEVR-RNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV  284 (347)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~  284 (347)
                      ....++.+......+-.+. ......+..|.+-|.|+.|++..+++++|+.|-..+|||- .|..+..-..|+-+|++++
T Consensus       156 ~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva  234 (737)
T KOG1524|consen  156 NSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVA  234 (737)
T ss_pred             CCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeee
Confidence            2222222221111111111 1233456689999999999999999999999999999995 6788888889999999999


Q ss_pred             eCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          285 AGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       285 ~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      |.|+..++.++. +++++=                 ....+.|..++|++||..+++|...|
T Consensus       235 ~npd~~~~v~S~-nt~R~~-----------------~p~~GSifnlsWS~DGTQ~a~gt~~G  278 (737)
T KOG1524|consen  235 FNPEKDYLLWSY-NTARFS-----------------SPRVGSIFNLSWSADGTQATCGTSTG  278 (737)
T ss_pred             eccccceeeeee-eeeeec-----------------CCCccceEEEEEcCCCceeeccccCc
Confidence            999976665543 344411                 12356899999999999999998776

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.66  E-value=3.2e-15  Score=125.53  Aligned_cols=180  Identities=18%  Similarity=0.345  Sum_probs=139.9

Q ss_pred             EEEeecCCEEEEecCCCcEEEEeCCCc----------ceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCC
Q 043707          127 YSLAASGDLLYTGSDSKNIRVWKNLKE----------FSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNP  195 (347)
Q Consensus       127 ~~l~~~~~~l~tg~~dg~I~vwd~~~~----------~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~  195 (347)
                      .++.++|..|++|.. ..|+++|+.+.          .+.-.+..+.|.|++|+| +...++.|+....+-|+.-..+.+
T Consensus       164 L~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p  242 (406)
T KOG2919|consen  164 LQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP  242 (406)
T ss_pred             EEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc
Confidence            445567999988875 58999996432          111234467899999999 556899999999988888776654


Q ss_pred             ceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCCC-EEEEEE
Q 043707          196 SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRISDC-KCLESI  273 (347)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~vwdl~~~-~~~~~~  273 (347)
                      ....                                .+|.+.|+.++|.++|+.|++|+. |-.|.+||+|.. .++..+
T Consensus       243 l~ll--------------------------------ggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L  290 (406)
T KOG2919|consen  243 LQLL--------------------------------GGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYAL  290 (406)
T ss_pred             eeee--------------------------------cccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhh
Confidence            3222                                259999999999999999999987 778999999865 567777


Q ss_pred             ecCCC-cEEEEEeC--CCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707          274 NAHDD-AINSVVAG--FDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       274 ~~h~~-~v~~i~~~--~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      ..|.+ .-..|.|.  |++ +|++|+.||.|++||+...+.     .+..+..|...|+.++++|--.++++++-
T Consensus       291 ~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn-----~~sv~~~~sd~vNgvslnP~mpilatssG  360 (406)
T KOG2919|consen  291 ERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN-----EVSVTGNYSDTVNGVSLNPIMPILATSSG  360 (406)
T ss_pred             hhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC-----cccccccccccccceecCcccceeeeccC
Confidence            77765 45566664  455 888999999999999986554     56677788899999999999888888764

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.65  E-value=5e-15  Score=121.11  Aligned_cols=225  Identities=12%  Similarity=0.180  Sum_probs=150.2

Q ss_pred             eEeeeeccccEEEEeec-CCEEEEecCCCcEEEEeCC--Ccceeee-cCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecC
Q 043707          116 IGSIVRKEGHIYSLAAS-GDLLYTGSDSKNIRVWKNL--KEFSGFK-SNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVS  191 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~~-~~~l~tg~~dg~I~vwd~~--~~~~~~~-~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~  191 (347)
                      ...+++|.+.|+++.+. .++|++|...|.|++|+..  +....++ .+...|+.++..|+ ..+.+-+.|+.+.+|++.
T Consensus         7 ~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia   85 (323)
T KOG0322|consen    7 FFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIA   85 (323)
T ss_pred             eeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEcc
Confidence            45677899999999986 4589999999999999854  4455666 56778999999997 488999999999999998


Q ss_pred             CCCCceeeeecc-cccccceEEe------------ccCCCeEEEEeecc--eeee------eecCCCeeEEEEcCC-C--
Q 043707          192 RKNPSVHKRVGS-LPTFKDYVKS------------SVNPKNYVEVRRNR--NVLK------IRHYDAVSCLSLNAE-Q--  247 (347)
Q Consensus       192 ~~~~~~~~~~~~-~~~~~~~~~~------------~~~~~~~~~~~~~~--~~~~------~~h~~~V~~l~~~~~-~--  247 (347)
                      .........+.. .-.+..+...            ...+.......+..  ..+.      ....+.+.|..+..+ +  
T Consensus        86 ~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~  165 (323)
T KOG0322|consen   86 YSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGST  165 (323)
T ss_pred             CcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccce
Confidence            754332221111 0011111100            00000001111110  0011      123455777765442 2  


Q ss_pred             CEEEEEeCCCcEEEEeCCCCEEEEEE----------ecCCC---------------------------------------
Q 043707          248 GLLYSGSWDKTLKVWRISDCKCLESI----------NAHDD---------------------------------------  278 (347)
Q Consensus       248 ~~l~s~s~dg~i~vwdl~~~~~~~~~----------~~h~~---------------------------------------  278 (347)
                      -+|+.|-++|.+.+||+.++..+..|          ..|..                                       
T Consensus       166 ~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~  245 (323)
T KOG0322|consen  166 FLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRK  245 (323)
T ss_pred             EEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccc
Confidence            35677888999999999876322211          11222                                       


Q ss_pred             -------cEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          279 -------AINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       279 -------~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                             .|..+.+-||+ .+|+++.|++||||..++..      ++..+..|...|++++|+|+...+|++|.|+.
T Consensus       246 e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~------pLAVLkyHsagvn~vAfspd~~lmAaaskD~r  316 (323)
T KOG0322|consen  246 EITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN------PLAVLKYHSAGVNAVAFSPDCELMAAASKDAR  316 (323)
T ss_pred             eEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCC------chhhhhhhhcceeEEEeCCCCchhhhccCCce
Confidence                   24445566776 78999999999999998554      78899999999999999999999999999973

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.65  E-value=1.3e-15  Score=124.48  Aligned_cols=156  Identities=20%  Similarity=0.369  Sum_probs=124.5

Q ss_pred             ccccEEEEeec---CC--EEEEecCCCcEEEEeCCCc------------ceeeecCCCCeeEEEEeCCCCEEEEEeCCCc
Q 043707          122 KEGHIYSLAAS---GD--LLYTGSDSKNIRVWKNLKE------------FSGFKSNSGLVKAIIITGDSNKIFTGHQDGK  184 (347)
Q Consensus       122 h~~~V~~l~~~---~~--~l~tg~~dg~I~vwd~~~~------------~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~  184 (347)
                      ..+.++|..+.   +.  +|++|.++|.|.+||....            ......|..+|.++.+.+....=++|+.+.+
T Consensus       149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk  228 (323)
T KOG0322|consen  149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK  228 (323)
T ss_pred             ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence            45678888853   33  7889999999999995542            2334578999999999986666788888999


Q ss_pred             EEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 043707          185 IRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI  264 (347)
Q Consensus       185 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl  264 (347)
                      +..|.+...........                           ...+ ..-.|..+..-||++.++++++|++|+||..
T Consensus       229 l~~~Sl~~s~gslq~~~---------------------------e~~l-knpGv~gvrIRpD~KIlATAGWD~RiRVysw  280 (323)
T KOG0322|consen  229 LVMYSLNHSTGSLQIRK---------------------------EITL-KNPGVSGVRIRPDGKILATAGWDHRIRVYSW  280 (323)
T ss_pred             ceeeeeccccCcccccc---------------------------eEEe-cCCCccceEEccCCcEEeecccCCcEEEEEe
Confidence            99998875421111100                           0001 2335778899999999999999999999999


Q ss_pred             CCCEEEEEEecCCCcEEEEEeCCC-CEEEEEeCCCcEEEEEc
Q 043707          265 SDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVWRR  305 (347)
Q Consensus       265 ~~~~~~~~~~~h~~~v~~i~~~~~-~~l~s~~~dg~I~vwd~  305 (347)
                      ++..++..++.|.+.|++++|+|+ +++|+++.|++|.+|++
T Consensus       281 rtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  281 RTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            999999999999999999999999 69999999999999986

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.64  E-value=5.5e-15  Score=131.63  Aligned_cols=190  Identities=14%  Similarity=0.146  Sum_probs=133.9

Q ss_pred             EEEEecCCCcEEEEeCCC-ccee-----eecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeecccccc
Q 043707          135 LLYTGSDSKNIRVWKNLK-EFSG-----FKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTF  207 (347)
Q Consensus       135 ~l~tg~~dg~I~vwd~~~-~~~~-----~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~  207 (347)
                      -|+.|-..|.|.+.|... .+..     ..-.+..|+|+.|-| +...|+.+..+|.+.++|..............++..
T Consensus       187 dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~  266 (636)
T KOG2394|consen  187 DLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDG  266 (636)
T ss_pred             ceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCC
Confidence            567777788888887432 1111     112347899999999 556888899999999998743211111111111111


Q ss_pred             cceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCC
Q 043707          208 KDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGF  287 (347)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~  287 (347)
                      ..+.......    ...+.....+.--.+.|...+|+|||++|++.+.||.++|+|..+.+.+..++..-+...|++|+|
T Consensus       267 ~~f~i~t~ks----k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP  342 (636)
T KOG2394|consen  267 DQFAILTSKS----KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP  342 (636)
T ss_pred             CeeEEeeeec----cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC
Confidence            1111000000    000122223333556899999999999999999999999999999999888888889999999999


Q ss_pred             CC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEcc
Q 043707          288 DS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQ  334 (347)
Q Consensus       288 ~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p  334 (347)
                      || +|++|++|.-|.||.+...      ..+..-++|..+|..|+|.|
T Consensus       343 DGKyIvtGGEDDLVtVwSf~er------RVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  343 DGKYIVTGGEDDLVTVWSFEER------RVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             CccEEEecCCcceEEEEEeccc------eEEEeccccccceeeEeecc
Confidence            99 9999999999999999732      26777789999999999996

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.63  E-value=2e-15  Score=130.12  Aligned_cols=156  Identities=26%  Similarity=0.350  Sum_probs=127.4

Q ss_pred             CCCeeEEEEeCCCC-EEEEEeCCCcEEEEecCCCCCcee-eeecccccccceEEeccCCCeEEEEeecceeeeeecCCCe
Q 043707          161 SGLVKAIIITGDSN-KIFTGHQDGKIRIWKVSRKNPSVH-KRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAV  238 (347)
Q Consensus       161 ~~~V~~l~~sp~~~-~l~s~~~Dg~I~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  238 (347)
                      ..+|..+.|.++.. .|+||+.|..|++|.+........ ..+..                        ...+.+|...|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y------------------------~s~Ls~H~~aV   68 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEY------------------------LSSLSRHTRAV   68 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEE------------------------eecccCCccee
Confidence            36899999998665 999999999999999987653221 11110                        01122599999


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEeCC--------C--------CEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEE
Q 043707          239 SCLSLNAEQGLLYSGSWDKTLKVWRIS--------D--------CKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVK  301 (347)
Q Consensus       239 ~~l~~~~~~~~l~s~s~dg~i~vwdl~--------~--------~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~  301 (347)
                      +++.|+|+|.+|++|+.+|.+.+|-..        +        ....+.+.+|...|..++|+|++ ++++++.|+.++
T Consensus        69 N~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~  148 (434)
T KOG1009|consen   69 NVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVR  148 (434)
T ss_pred             EEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEE
Confidence            999999999999999999999999765        2        23456677899999999999998 888999999999


Q ss_pred             EEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          302 VWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       302 vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      +||+..+.      +...+..|..-|..++|.|.++++++=+.|.
T Consensus       149 l~Dv~~G~------l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr  187 (434)
T KOG1009|consen  149 LWDVHAGQ------LLAILDDHEHYVQGVAWDPLNQYVASKSSDR  187 (434)
T ss_pred             EEEeccce------eEeeccccccccceeecchhhhhhhhhccCc
Confidence            99998543      6888899999999999999999999877764

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=1.3e-14  Score=126.98  Aligned_cols=218  Identities=14%  Similarity=0.239  Sum_probs=155.3

Q ss_pred             CCCCCCCCCCCCCCCc-ccccc--cc-------------eeEeeeeccc---cEEEEeecCCEEEEecCCCcEEEEeCC-
Q 043707           92 YTKSPWLMPPYSPNEN-LLSSC--NG-------------LIGSIVRKEG---HIYSLAASGDLLYTGSDSKNIRVWKNL-  151 (347)
Q Consensus        92 ~~~~~~~~~~~~p~~~-~~~~~--~~-------------~i~~l~~h~~---~V~~l~~~~~~l~tg~~dg~I~vwd~~-  151 (347)
                      ..+.|.....|.|+|. .+...  .+             .++.+.+++.   +-+.+++++++|+..+..|.|.|.... 
T Consensus       255 l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT  334 (514)
T KOG2055|consen  255 LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKT  334 (514)
T ss_pred             eccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhh
Confidence            4467777778899887 32221  11             2333334442   234566789999999999999999733 


Q ss_pred             -CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceee
Q 043707          152 -KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVL  230 (347)
Q Consensus       152 -~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (347)
                       +.+..++ -.+.|.+++|+.+++.|+.++.+|.|.+||++.........                              
T Consensus       335 ~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~------------------------------  383 (514)
T KOG2055|consen  335 KELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFV------------------------------  383 (514)
T ss_pred             hhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEe------------------------------
Confidence             3344443 45789999999999999999999999999999874332221                              


Q ss_pred             eeecCCCe--eEEEEcCCCCEEEEEeCCCcEEEEeCCC------CEEEEEEecCCCcEEEEEeCCCC-EEEEEe--CCCc
Q 043707          231 KIRHYDAV--SCLSLNAEQGLLYSGSWDKTLKVWRISD------CKCLESINAHDDAINSVVAGFDS-LVFTGS--ADGT  299 (347)
Q Consensus       231 ~~~h~~~V--~~l~~~~~~~~l~s~s~dg~i~vwdl~~------~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~--~dg~  299 (347)
                         ..+.|  +.++.++++.+|++|+..|.|.|||..+      .+++..+..-...|+++.|++|. +||.++  .+..
T Consensus       384 ---D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~kna  460 (514)
T KOG2055|consen  384 ---DDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNA  460 (514)
T ss_pred             ---ecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccc
Confidence               12222  4567778899999999999999999753      46777777677889999999998 555554  5788


Q ss_pred             EEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          300 VKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       300 I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      +++-.+..... ...  .......-+.|+||+|+|.+.+||.|..+|
T Consensus       461 lrLVHvPS~TV-FsN--fP~~n~~vg~vtc~aFSP~sG~lAvGNe~g  504 (514)
T KOG2055|consen  461 LRLVHVPSCTV-FSN--FPTSNTKVGHVTCMAFSPNSGYLAVGNEAG  504 (514)
T ss_pred             eEEEeccceee-ecc--CCCCCCcccceEEEEecCCCceEEeecCCC
Confidence            99888863221 001  111123345799999999999999999887

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.62  E-value=1.1e-13  Score=122.50  Aligned_cols=172  Identities=12%  Similarity=0.108  Sum_probs=121.4

Q ss_pred             CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEE-EEEeCCCcEEEEecCCCCCceeeeecccccccc
Q 043707          133 GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKI-FTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKD  209 (347)
Q Consensus       133 ~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l-~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~  209 (347)
                      ++++++++.|+.|++||..  +....+..+ ..+.+++|+|+++.+ ++++.++.|++||..+++......         
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---------   70 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP---------   70 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc---------
Confidence            3578899999999999964  445566554 346789999999876 567788999999998765321110         


Q ss_pred             eEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEE-eCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCC
Q 043707          210 YVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSG-SWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD  288 (347)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~  288 (347)
                                              ....+..++|+|+++.++++ ..|+.|++||+++.+.+..+..+ ..+..++|+|+
T Consensus        71 ------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~d  125 (300)
T TIGR03866        71 ------------------------SGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPD  125 (300)
T ss_pred             ------------------------CCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCC
Confidence                                    11234678999999877655 56899999999998888877633 34678999999


Q ss_pred             C-EEEEEeCCC-cEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec-CCC
Q 043707          289 S-LVFTGSADG-TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS-SDG  346 (347)
Q Consensus       289 ~-~l~s~~~dg-~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs-~DG  346 (347)
                      + +++++..++ .+.+||.+....      .... .....+..++|+|++++|+.++ .||
T Consensus       126 g~~l~~~~~~~~~~~~~d~~~~~~------~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~  179 (300)
T TIGR03866       126 GKIVVNTSETTNMAHFIDTKTYEI------VDNV-LVDQRPRFAEFTADGKELWVSSEIGG  179 (300)
T ss_pred             CCEEEEEecCCCeEEEEeCCCCeE------EEEE-EcCCCccEEEECCCCCEEEEEcCCCC
Confidence            8 666666654 577788864321      1111 1223457899999999886554 354

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.62  E-value=1.3e-14  Score=120.32  Aligned_cols=190  Identities=15%  Similarity=0.138  Sum_probs=142.3

Q ss_pred             eccccEEEEeec-------CCEEEEecCCCcEEEEeCCCc---c--------eeeecCCCCeeEEEEeC-CCCEEEEEeC
Q 043707          121 RKEGHIYSLAAS-------GDLLYTGSDSKNIRVWKNLKE---F--------SGFKSNSGLVKAIIITG-DSNKIFTGHQ  181 (347)
Q Consensus       121 ~h~~~V~~l~~~-------~~~l~tg~~dg~I~vwd~~~~---~--------~~~~~h~~~V~~l~~sp-~~~~l~s~~~  181 (347)
                      .|.-+++.+.|.       .++|||.++  .+|+|....+   +        ..-..+..++++..|+. +.++|.+++-
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            466667777653       346777653  7999985421   0        01223567899999988 8889999999


Q ss_pred             CCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCC-CEEEEEeCCCcEE
Q 043707          182 DGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ-GLLYSGSWDKTLK  260 (347)
Q Consensus       182 Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~dg~i~  260 (347)
                      |-+..|||++++....                             -+..++.|...|..++|...+ ..+++.+.||.++
T Consensus       172 DTTCTiWdie~~~~~~-----------------------------vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvR  222 (364)
T KOG0290|consen  172 DTTCTIWDIETGVSGT-----------------------------VKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVR  222 (364)
T ss_pred             cCeEEEEEEeeccccc-----------------------------eeeEEEecCcceeEEEeccCccceEEEecCCCcEE
Confidence            9999999999873210                             112344699999999999854 5889999999999


Q ss_pred             EEeCCCCEEEEEE---ecCCCcEEEEEeCCCC--EEEEEeC-CCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEcc
Q 043707          261 VWRISDCKCLESI---NAHDDAINSVVAGFDS--LVFTGSA-DGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQ  334 (347)
Q Consensus       261 vwdl~~~~~~~~~---~~h~~~v~~i~~~~~~--~l~s~~~-dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p  334 (347)
                      ++|+|..+.-..+   .....+...++|++..  ++|+-.. ...|.|-|++....     ++..+.+|.+.|++|+|.|
T Consensus       223 mFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t-----pva~L~~H~a~VNgIaWaP  297 (364)
T KOG0290|consen  223 MFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT-----PVARLRNHQASVNGIAWAP  297 (364)
T ss_pred             EEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc-----ceehhhcCcccccceEecC
Confidence            9999986543332   2225678889998865  7776554 46899999996654     7889999999999999999


Q ss_pred             CC-CEEEEecCCC
Q 043707          335 ES-AVVYCGSSDG  346 (347)
Q Consensus       335 ~~-~~l~sgs~DG  346 (347)
                      .. ..|++||.|-
T Consensus       298 hS~~hictaGDD~  310 (364)
T KOG0290|consen  298 HSSSHICTAGDDC  310 (364)
T ss_pred             CCCceeeecCCcc
Confidence            65 7888888873

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=1.4e-14  Score=121.30  Aligned_cols=145  Identities=17%  Similarity=0.255  Sum_probs=112.6

Q ss_pred             eeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEE
Q 043707          164 VKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSL  243 (347)
Q Consensus       164 V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  243 (347)
                      -.|+.|++.|.+|+.|+.||.|.|||+.+.......                                .+|..+|++++|
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~l--------------------------------saH~~pi~sl~W   73 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARML--------------------------------SAHVRPITSLCW   73 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhh--------------------------------hccccceeEEEe
Confidence            789999999999999999999999999987632211                                159999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEE----------------------------------------
Q 043707          244 NAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV----------------------------------------  283 (347)
Q Consensus       244 ~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i----------------------------------------  283 (347)
                      +++|+.|++++.|..|++||+..|.+++.+.. ..+|+.+                                        
T Consensus        74 S~dgr~LltsS~D~si~lwDl~~gs~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dl  152 (405)
T KOG1273|consen   74 SRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDL  152 (405)
T ss_pred             cCCCCEeeeecCCceeEEEeccCCCceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccc
Confidence            99999999999999999999999887776542 1111111                                        


Q ss_pred             -------EeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccC-CcEEEEEEccCCCEEEEecCCCC
Q 043707          284 -------VAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQE-NAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       284 -------~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~-~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                             .|.+.| ++++|...|.+.|+|..+.+      ++..+.... ..|..+.|+..|++|+.-+.|.+
T Consensus       153 n~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e------~vas~rits~~~IK~I~~s~~g~~liiNtsDRv  219 (405)
T KOG1273|consen  153 NSSASHGVFDRRGKYIITGTSKGKLLVYDAETLE------CVASFRITSVQAIKQIIVSRKGRFLIINTSDRV  219 (405)
T ss_pred             ccccccccccCCCCEEEEecCcceEEEEecchhe------eeeeeeechheeeeEEEEeccCcEEEEecCCce
Confidence                   133333 78899999999999988553      333333333 68999999999999999888853

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.62  E-value=2.5e-14  Score=120.15  Aligned_cols=185  Identities=15%  Similarity=0.311  Sum_probs=138.4

Q ss_pred             cCCEEEEecCCCcEEEEeCC--Ccceeee--cCCC---CeeEEEEeCCCCEEEEEeCCCcEEEEec-CCCCCceeeeecc
Q 043707          132 SGDLLYTGSDSKNIRVWKNL--KEFSGFK--SNSG---LVKAIIITGDSNKIFTGHQDGKIRIWKV-SRKNPSVHKRVGS  203 (347)
Q Consensus       132 ~~~~l~tg~~dg~I~vwd~~--~~~~~~~--~h~~---~V~~l~~sp~~~~l~s~~~Dg~I~vwd~-~~~~~~~~~~~~~  203 (347)
                      +..++++.+.+.-|++||..  +....+.  .|..   +-.+++|+|||.+|+.|- ...|+++|+ +.+..........
T Consensus       122 ~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~  200 (406)
T KOG2919|consen  122 STNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVT  200 (406)
T ss_pred             ccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhh
Confidence            45699999999999999943  2222222  2332   456899999999998776 569999999 5554322111100


Q ss_pred             cccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEE
Q 043707          204 LPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINS  282 (347)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~  282 (347)
                                               .-+.+..+-|.|++|+|. ...++.|+...++-||.-..++++..+.+|.+.|+.
T Consensus       201 -------------------------~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvTh  255 (406)
T KOG2919|consen  201 -------------------------KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTH  255 (406)
T ss_pred             -------------------------cccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeee
Confidence                                     001235677999999995 569999999999999998899999999999999999


Q ss_pred             EEeCCCC-EEEEEe-CCCcEEEEEcccCCccceeeehhhhhccCC-cEEE--EEEccCCCEEEEecCCCC
Q 043707          283 VVAGFDS-LVFTGS-ADGTVKVWRRELQGKGTKHFLAQVLLKQEN-AITA--LAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       283 i~~~~~~-~l~s~~-~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~-~V~~--l~~~p~~~~l~sgs~DG~  347 (347)
                      +.|+++| .|++|. .|..|..||++....     ++..|..|.. .=..  ....|++++|++|+.||.
T Consensus       256 L~~~edGn~lfsGaRk~dkIl~WDiR~~~~-----pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~  320 (406)
T KOG2919|consen  256 LQWCEDGNKLFSGARKDDKILCWDIRYSRD-----PVYALERHVGDTNQRILFDLDPKGEILASGDTDGS  320 (406)
T ss_pred             EEeccCcCeecccccCCCeEEEEeehhccc-----hhhhhhhhccCccceEEEecCCCCceeeccCCCcc
Confidence            9999998 777776 488999999996544     6777777754 2233  445688999999999984

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.62  E-value=9.5e-15  Score=127.73  Aligned_cols=194  Identities=15%  Similarity=0.223  Sum_probs=142.1

Q ss_pred             eEeeeeccccEEEEeec---CCEEEEecCCCcEEEEeCCCcc----eeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707          116 IGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLKEF----SGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW  188 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~~~~----~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw  188 (347)
                      +..+..|.++|.++.++   ...+++.+.||+|++-|+.+.+    .....-...+..+.|+.+...++.+..=|...+|
T Consensus       227 v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~i  306 (498)
T KOG4328|consen  227 VYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVI  306 (498)
T ss_pred             eEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEE
Confidence            45566788999999975   4589999999999999976442    2233334567788898888888888888899999


Q ss_pred             ecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCC
Q 043707          189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDC  267 (347)
Q Consensus       189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwdl~~~  267 (347)
                      |.++.........                               -|...|+.|+++|- ..+|++++.|++.+|||+|..
T Consensus       307 D~R~~~s~~~~~~-------------------------------lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l  355 (498)
T KOG4328|consen  307 DLRTDGSEYENLR-------------------------------LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQL  355 (498)
T ss_pred             EeecCCccchhhh-------------------------------hhhcccceeecCCCCchheeecccCcceeeeehhhh
Confidence            9998764222111                               27889999999995 568999999999999999865


Q ss_pred             EE----EEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccC----C--cEEEEEEccCC
Q 043707          268 KC----LESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQE----N--AITALAVNQES  336 (347)
Q Consensus       268 ~~----~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~----~--~V~~l~~~p~~  336 (347)
                      ..    +...-.|...|.+..|+|.+ .|++.+.|..|+|||..--..  ...+... ..|.    .  .....+|.|+.
T Consensus       356 ~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa--~~~p~~~-I~Hn~~t~RwlT~fKA~W~P~~  432 (498)
T KOG4328|consen  356 RGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISA--KDEPLGT-IPHNNRTGRWLTPFKAAWDPDY  432 (498)
T ss_pred             cCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccc--cCCccce-eeccCcccccccchhheeCCCc
Confidence            32    23344699999999999986 899999999999999841110  1111111 1121    1  34456899999


Q ss_pred             CEEEEec
Q 043707          337 AVVYCGS  343 (347)
Q Consensus       337 ~~l~sgs  343 (347)
                      .++++|-
T Consensus       433 ~li~vg~  439 (498)
T KOG4328|consen  433 NLIVVGR  439 (498)
T ss_pred             cEEEEec
Confidence            9988875

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.61  E-value=1.2e-14  Score=129.48  Aligned_cols=131  Identities=15%  Similarity=0.296  Sum_probs=105.9

Q ss_pred             ccEEEEee---cCCEEEEecCCCcEEEEeCC-------------C-----------------cceeeecCCCCeeEEEEe
Q 043707          124 GHIYSLAA---SGDLLYTGSDSKNIRVWKNL-------------K-----------------EFSGFKSNSGLVKAIIIT  170 (347)
Q Consensus       124 ~~V~~l~~---~~~~l~tg~~dg~I~vwd~~-------------~-----------------~~~~~~~h~~~V~~l~~s  170 (347)
                      ..|+|+.|   +..+++.+-.+|.+++||..             +                 .+..+.--.+.|..++|+
T Consensus       220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS  299 (636)
T KOG2394|consen  220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS  299 (636)
T ss_pred             cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence            56889987   34577788889999999621             0                 011122234578899999


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEE
Q 043707          171 GDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLL  250 (347)
Q Consensus       171 p~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l  250 (347)
                      |||++||+.++||.+||+|..+.+....+.                                ...+...|++|+|||++|
T Consensus       300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk--------------------------------SYFGGLLCvcWSPDGKyI  347 (636)
T KOG2394|consen  300 PDGKYLATVSQDGFLRIFDFDTQELLGVMK--------------------------------SYFGGLLCVCWSPDGKYI  347 (636)
T ss_pred             CCCceEEEEecCceEEEeeccHHHHHHHHH--------------------------------hhccceEEEEEcCCccEE
Confidence            999999999999999999998875432221                                145678999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeC
Q 043707          251 YSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAG  286 (347)
Q Consensus       251 ~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~  286 (347)
                      ++|++|--|.||.+...+.+..=++|+.+|+.|+|.
T Consensus       348 vtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  348 VTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             EecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence            999999999999999999999999999999999997

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=4.9e-15  Score=132.29  Aligned_cols=171  Identities=16%  Similarity=0.242  Sum_probs=128.3

Q ss_pred             ceeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCC--Cc-ceeeecCCCCeeEEEEeC--CCCEEEEEeCCCcEE
Q 043707          114 GLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KE-FSGFKSNSGLVKAIIITG--DSNKIFTGHQDGKIR  186 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~--~~-~~~~~~h~~~V~~l~~sp--~~~~l~s~~~Dg~I~  186 (347)
                      ++-+.|.+|+|-|.|++|+  |.+|++|++|-.+.|||..  +. ...-.+|..-|.+++|-|  +.+.+++|..|..|+
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~  120 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK  120 (758)
T ss_pred             chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence            4566788999999999985  8899999999999999954  22 334568999999999999  567899999999999


Q ss_pred             EEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCC-CEEEEEeCCCcEEEEeCC
Q 043707          187 IWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ-GLLYSGSWDKTLKVWRIS  265 (347)
Q Consensus       187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~dg~i~vwdl~  265 (347)
                      ++|+...+....-.-..                      .....+..|...|..|+-.|++ +.+.+++.||+|+-+|++
T Consensus       121 lfdl~~~~~~~~d~~~~----------------------~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiR  178 (758)
T KOG1310|consen  121 LFDLDSSKEGGMDHGME----------------------ETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIR  178 (758)
T ss_pred             EEecccccccccccCcc----------------------chhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeeccc
Confidence            99998643211100000                      0011123488999999999987 889999999999999998


Q ss_pred             CCEE-EE---------EEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcc
Q 043707          266 DCKC-LE---------SINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRE  306 (347)
Q Consensus       266 ~~~~-~~---------~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~  306 (347)
                      .... -.         .+...--...|+..+|..  +|++|+.|--.++||++
T Consensus       179 Eph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  179 EPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             CCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence            7421 11         111112245688888875  99999999999999955

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=1.4e-13  Score=111.54  Aligned_cols=177  Identities=19%  Similarity=0.245  Sum_probs=127.9

Q ss_pred             eEeeeeccccEEEEeecCCEEEEecCCCcEEEEeCCCcce--------e--eecCC-----CCeeEEEEeCCCCEEEEEe
Q 043707          116 IGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFS--------G--FKSNS-----GLVKAIIITGDSNKIFTGH  180 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~~~~~--------~--~~~h~-----~~V~~l~~sp~~~~l~s~~  180 (347)
                      +-..++|+++|+.+.+..++|++|+. |.|+-|...+...        .  ..-|.     ..|+++...|..+-++.++
T Consensus        55 iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag  133 (325)
T KOG0649|consen   55 IVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG  133 (325)
T ss_pred             eeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec
Confidence            44558999999999999999999885 9999997432211        1  11122     3689999999777777778


Q ss_pred             CCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 043707          181 QDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLK  260 (347)
Q Consensus       181 ~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~  260 (347)
                      .|+.++-||+++++....                                ..+|.+.|.++..-.....+++|+.||+++
T Consensus       134 GD~~~y~~dlE~G~i~r~--------------------------------~rGHtDYvH~vv~R~~~~qilsG~EDGtvR  181 (325)
T KOG0649|consen  134 GDGVIYQVDLEDGRIQRE--------------------------------YRGHTDYVHSVVGRNANGQILSGAEDGTVR  181 (325)
T ss_pred             CCeEEEEEEecCCEEEEE--------------------------------EcCCcceeeeeeecccCcceeecCCCccEE
Confidence            999999999999863322                                236999999999866677899999999999


Q ss_pred             EEeCCCCEEEEEEecC----------CCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEE
Q 043707          261 VWRISDCKCLESINAH----------DDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITAL  330 (347)
Q Consensus       261 vwdl~~~~~~~~~~~h----------~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l  330 (347)
                      |||+++++++..+...          ...|-+++.+ ..++++ +....+.+|+++....      ... ..-...|..+
T Consensus       182 vWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~-edWlvC-GgGp~lslwhLrsse~------t~v-fpipa~v~~v  252 (325)
T KOG0649|consen  182 VWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN-EDWLVC-GGGPKLSLWHLRSSES------TCV-FPIPARVHLV  252 (325)
T ss_pred             EEeccccceeEEeccccChhhcCcccCceeEEEecc-CceEEe-cCCCceeEEeccCCCc------eEE-EecccceeEe
Confidence            9999999998887533          2346666654 235544 4566899999985432      111 1123456667


Q ss_pred             EEcc
Q 043707          331 AVNQ  334 (347)
Q Consensus       331 ~~~p  334 (347)
                      .|..
T Consensus       253 ~F~~  256 (325)
T KOG0649|consen  253 DFVD  256 (325)
T ss_pred             eeec
Confidence            7754

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.60  E-value=1.7e-14  Score=130.01  Aligned_cols=199  Identities=21%  Similarity=0.282  Sum_probs=160.2

Q ss_pred             eEeeeeccccEEEEeec--CCEEEEecC---CCcEEEEeCCCc--ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707          116 IGSIVRKEGHIYSLAAS--GDLLYTGSD---SKNIRVWKNLKE--FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW  188 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~~--~~~l~tg~~---dg~I~vwd~~~~--~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw  188 (347)
                      +.....|...|..+.|.  |+||++...   ...|.|.++.+.  ...|+...+.|.++.|+|...+|+.+++ ..||||
T Consensus       514 v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiY  592 (733)
T KOG0650|consen  514 VCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIY  592 (733)
T ss_pred             eEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEE
Confidence            56667899999999986  779998754   357888886543  3456666788999999998889988885 589999


Q ss_pred             ecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-
Q 043707          189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC-  267 (347)
Q Consensus       189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~-  267 (347)
                      |+..+.......                                .....|..++.+|.|..|+.|+.|+.+..+|+.-. 
T Consensus       593 dL~kqelvKkL~--------------------------------tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlss  640 (733)
T KOG0650|consen  593 DLSKQELVKKLL--------------------------------TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSS  640 (733)
T ss_pred             ehhHHHHHHHHh--------------------------------cCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCc
Confidence            998754322211                                14567889999999999999999999999999744 


Q ss_pred             EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCC---ccceeeehhhhhccCCc----EEEEEEccCCCEE
Q 043707          268 KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQG---KGTKHFLAQVLLKQENA----ITALAVNQESAVV  339 (347)
Q Consensus       268 ~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~---~~~~~~~~~~~~~h~~~----V~~l~~~p~~~~l  339 (347)
                      ++.++++.|...++.|+|++.- +|++|+.||++.||.-..-.   +.....++..+.+|...    |.++.|+|...+|
T Consensus       641 kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWL  720 (733)
T KOG0650|consen  641 KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWL  720 (733)
T ss_pred             chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceE
Confidence            6888999999999999999875 99999999999999654321   12345677888999665    9999999999999


Q ss_pred             EEecCCCC
Q 043707          340 YCGSSDGL  347 (347)
Q Consensus       340 ~sgs~DG~  347 (347)
                      ++++.||+
T Consensus       721 fsAGAd~t  728 (733)
T KOG0650|consen  721 FSAGADGT  728 (733)
T ss_pred             EecCCCce
Confidence            99999985

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.59  E-value=1.3e-12  Score=109.77  Aligned_cols=201  Identities=17%  Similarity=0.257  Sum_probs=133.1

Q ss_pred             CcEEEEeCCCc--ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCC-CCceeeeecccccc---------cce
Q 043707          143 KNIRVWKNLKE--FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRK-NPSVHKRVGSLPTF---------KDY  210 (347)
Q Consensus       143 g~I~vwd~~~~--~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~-~~~~~~~~~~~~~~---------~~~  210 (347)
                      .+|.|||..+.  +..+ ....+|.++.+.++  .|++.- .++|.||...+. +..........|..         ..+
T Consensus        75 NkviIWDD~k~~~i~el-~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~  150 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIEL-SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL  150 (346)
T ss_pred             ceEEEEecccCcEEEEE-EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence            47999995433  3333 35689999999887  666655 679999998743 32222222222222         112


Q ss_pred             EEeccCCC---eEEEEeecc---eeeeeecCCCeeEEEEcCCCCEEEEEeCCCc-EEEEeCCCCEEEEEEec--CCCcEE
Q 043707          211 VKSSVNPK---NYVEVRRNR---NVLKIRHYDAVSCLSLNAEQGLLYSGSWDKT-LKVWRISDCKCLESINA--HDDAIN  281 (347)
Q Consensus       211 ~~~~~~~~---~~~~~~~~~---~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~-i~vwdl~~~~~~~~~~~--h~~~v~  281 (347)
                      ++......   .++.+....   ......|...|.|++++-+|.++|+++..|+ |+|||..+++.+..++.  ....|.
T Consensus       151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy  230 (346)
T KOG2111|consen  151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY  230 (346)
T ss_pred             EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence            22221111   222222222   3566789999999999999999999999998 78999999999999973  245799


Q ss_pred             EEEeCCCC-EEEEEeCCCcEEEEEcccCCccce--------e-eehhh---------hhccCCcEEEEEEccCCCEEEEe
Q 043707          282 SVVAGFDS-LVFTGSADGTVKVWRRELQGKGTK--------H-FLAQV---------LLKQENAITALAVNQESAVVYCG  342 (347)
Q Consensus       282 ~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~--------~-~~~~~---------~~~h~~~V~~l~~~p~~~~l~sg  342 (347)
                      +|+|+|+. +|++++..|+|.||.++.......        . .+.+.         +.-.++...-++|-.+.+.++..
T Consensus       231 ~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i  310 (346)
T KOG2111|consen  231 CIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAI  310 (346)
T ss_pred             EEEeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEE
Confidence            99999997 999999999999999985432111        0 11111         11124466677887776666666


Q ss_pred             cCCCC
Q 043707          343 SSDGL  347 (347)
Q Consensus       343 s~DG~  347 (347)
                      +.||+
T Consensus       311 ~~Dgs  315 (346)
T KOG2111|consen  311 CADGS  315 (346)
T ss_pred             EeCCc
Confidence            77774

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.59  E-value=1e-15  Score=142.49  Aligned_cols=218  Identities=15%  Similarity=0.271  Sum_probs=139.0

Q ss_pred             cceeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707          113 NGLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW  188 (347)
Q Consensus       113 ~~~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw  188 (347)
                      .+.++.|.+|...|+|..++  |.++++|++|..|+||...  .++....+|.+.|+.++.+.+..++++++.|..|++|
T Consensus       180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW  259 (1113)
T KOG0644|consen  180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW  259 (1113)
T ss_pred             HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence            34678889999999999886  7899999999999999744  5678899999999999999998899999999999999


Q ss_pred             ecCCCCCceeeee--------cccccccceEEeccCCCeEEEEeecc--eeeee------ecCC----------------
Q 043707          189 KVSRKNPSVHKRV--------GSLPTFKDYVKSSVNPKNYVEVRRNR--NVLKI------RHYD----------------  236 (347)
Q Consensus       189 d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------~h~~----------------  236 (347)
                      .+..+.++....-        ...|..      .........++...  .....      ...+                
T Consensus       260 rl~~~~pvsvLrghtgavtaiafsP~~------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T  333 (1113)
T KOG0644|consen  260 RLPDGAPVSVLRGHTGAVTAIAFSPRA------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT  333 (1113)
T ss_pred             ecCCCchHHHHhccccceeeeccCccc------cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccc
Confidence            9998875432221        111110      01111111111111  00000      0000                


Q ss_pred             ----------CeeEEEEcCCC-----------CEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC--EEEE
Q 043707          237 ----------AVSCLSLNAEQ-----------GLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFT  293 (347)
Q Consensus       237 ----------~V~~l~~~~~~-----------~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~--~l~s  293 (347)
                                ...+++|....           .+.+++-.+..+.+|++-++..++.+.+|...+..+.++|-.  ...+
T Consensus       334 gs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ms  413 (1113)
T KOG0644|consen  334 GSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMS  413 (1113)
T ss_pred             ccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhh
Confidence                      01112222111           122222234445556665666666666778888888888865  5568


Q ss_pred             EeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEe
Q 043707          294 GSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCG  342 (347)
Q Consensus       294 ~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sg  342 (347)
                      ++.||...|||+-.+-      +.+........+.+-+|+++|..++..
T Consensus       414 ag~dgst~iwdi~eg~------pik~y~~gh~kl~d~kFSqdgts~~ls  456 (1113)
T KOG0644|consen  414 AGYDGSTIIWDIWEGI------PIKHYFIGHGKLVDGKFSQDGTSIALS  456 (1113)
T ss_pred             ccCCCceEeeecccCC------cceeeecccceeeccccCCCCceEecC
Confidence            9999999999997433      222222224567788999998776654

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=5.8e-14  Score=120.80  Aligned_cols=191  Identities=13%  Similarity=0.140  Sum_probs=141.2

Q ss_pred             eEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCC--------Ccceeee-cCCCCeeEEEEeCCCCEEEEEeCCCc
Q 043707          116 IGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--------KEFSGFK-SNSGLVKAIIITGDSNKIFTGHQDGK  184 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~--------~~~~~~~-~h~~~V~~l~~sp~~~~l~s~~~Dg~  184 (347)
                      .+.+.+|.|-|.++.++  +.+|++|+.|..++||...        +.+.... .|..-|.|++|....+++++|..+++
T Consensus        49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~  128 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT  128 (609)
T ss_pred             hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence            34677899999999985  7799999999999999843        2233222 35689999999999999999999999


Q ss_pred             EEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 043707          185 IRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI  264 (347)
Q Consensus       185 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl  264 (347)
                      |.+-|+++.+.+....-.                              ...+.|..+..+|..+.|++.+.++.+.+||.
T Consensus       129 VI~HDiEt~qsi~V~~~~------------------------------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~  178 (609)
T KOG4227|consen  129 VIKHDIETKQSIYVANEN------------------------------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDN  178 (609)
T ss_pred             eEeeecccceeeeeeccc------------------------------CcccceeecccCCCCceEEEEecCceEEEEec
Confidence            999999987633221100                              12348999999999999999999999999999


Q ss_pred             CCCE-EEEE--EecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhh------hccCCcEEEEEEc
Q 043707          265 SDCK-CLES--INAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVL------LKQENAITALAVN  333 (347)
Q Consensus       265 ~~~~-~~~~--~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~------~~h~~~V~~l~~~  333 (347)
                      +... ++..  +.........+.|+|..  +|++.+..+-+.|||++....     ++...      ......-..+-|+
T Consensus       179 Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~-----~~~~~~~~~~L~~~~~~~M~~~~~  253 (609)
T KOG4227|consen  179 RDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQAR-----PVYQRSMFKGLPQENTEWMGSLWS  253 (609)
T ss_pred             cCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccc-----hHHhhhccccCcccchhhhheeeC
Confidence            8765 2222  22344567888999986  899999999999999986543     11111      1111223567788


Q ss_pred             cCCCEEEE
Q 043707          334 QESAVVYC  341 (347)
Q Consensus       334 p~~~~l~s  341 (347)
                      |+|..+.+
T Consensus       254 ~~G~Q~ms  261 (609)
T KOG4227|consen  254 PSGNQFMS  261 (609)
T ss_pred             CCCCeehh
Confidence            88866543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.57  E-value=1e-12  Score=120.44  Aligned_cols=194  Identities=27%  Similarity=0.507  Sum_probs=147.6

Q ss_pred             eeEeeeeccc-cEEEEee---cCC-EEEEe-cCCCcEEEEeCC---CcceeeecCCCCeeEEEEeCCCCEEEEEeC-CCc
Q 043707          115 LIGSIVRKEG-HIYSLAA---SGD-LLYTG-SDSKNIRVWKNL---KEFSGFKSNSGLVKAIIITGDSNKIFTGHQ-DGK  184 (347)
Q Consensus       115 ~i~~l~~h~~-~V~~l~~---~~~-~l~tg-~~dg~I~vwd~~---~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~-Dg~  184 (347)
                      .+..+..+.. .+..+..   ++. +++.. ..|+.+++|+..   .....+..|...|.+++|+|++..+++++. |+.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  179 (466)
T COG2319         100 LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT  179 (466)
T ss_pred             eEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCc
Confidence            3445544332 4444433   455 44544 449999999965   456778899999999999999998888886 999


Q ss_pred             EEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCC-EEEEEeCCCcEEEEe
Q 043707          185 IRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQG-LLYSGSWDKTLKVWR  263 (347)
Q Consensus       185 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~dg~i~vwd  263 (347)
                      +++|++........                                ...|...|.+++|+|++. .+++++.|+.|++||
T Consensus       180 ~~~~~~~~~~~~~~--------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd  227 (466)
T COG2319         180 IKLWDLRTGKPLST--------------------------------LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWD  227 (466)
T ss_pred             eEEEEcCCCceEEe--------------------------------eccCCCceEEEEEcCCcceEEEEecCCCcEEEEE
Confidence            99999987332111                                113889999999999987 555558999999999


Q ss_pred             CCCCEEEE-EEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEE
Q 043707          264 ISDCKCLE-SINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYC  341 (347)
Q Consensus       264 l~~~~~~~-~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s  341 (347)
                      ...++.+. .+..|.... ...|++++ ++++++.|+.+++|++.....     ....+..|...|.++.|.|++..+++
T Consensus       228 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~  301 (466)
T COG2319         228 LSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS-----LLRTLSGHSSSVLSVAFSPDGKLLAS  301 (466)
T ss_pred             CCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc-----EEEEEecCCccEEEEEECCCCCEEEE
Confidence            99888887 688888775 44789987 888999999999999985543     12222677889999999998888888


Q ss_pred             ecCCC
Q 043707          342 GSSDG  346 (347)
Q Consensus       342 gs~DG  346 (347)
                      ++.|+
T Consensus       302 ~~~d~  306 (466)
T COG2319         302 GSSDG  306 (466)
T ss_pred             eeCCC
Confidence            88774

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.55  E-value=1.6e-13  Score=125.31  Aligned_cols=209  Identities=13%  Similarity=0.153  Sum_probs=143.2

Q ss_pred             EEeecCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCce------ee
Q 043707          128 SLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSV------HK  199 (347)
Q Consensus       128 ~l~~~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~------~~  199 (347)
                      |+.++|..|+.+..+ .+.+||..  ..++++++|...|+|++|+.+|+.|++|+.|..|.+|.-.-.....      ..
T Consensus        19 afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQ   97 (1081)
T KOG1538|consen   19 AFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQ   97 (1081)
T ss_pred             EECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeee
Confidence            666788877666644 79999955  5588999999999999999999999999999999999865332111      11


Q ss_pred             eecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEe---cC
Q 043707          200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN---AH  276 (347)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~---~h  276 (347)
                      .....|....+..+..+.-.++ ....+.+........|.+++|..||.+|+.|-.+|+|.|-+- ++++...+.   +.
T Consensus        98 CMsFNP~~h~LasCsLsdFglW-S~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~  175 (1081)
T KOG1538|consen   98 CMSFNPITHQLASCSLSDFGLW-SPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGS  175 (1081)
T ss_pred             EeecCchHHHhhhcchhhcccc-ChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCC
Confidence            1111122222222222221111 112222333334566888999999999999999999998864 444444443   45


Q ss_pred             CCcEEEEEeCCCC------EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          277 DDAINSVVAGFDS------LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       277 ~~~v~~i~~~~~~------~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      ..+|.+|+|+|..      .+++.....++.++.+...       .+..-..-.-...|+.+.++|.++..||.||
T Consensus       176 Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-------~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk  244 (1081)
T KOG1538|consen  176 NSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-------QIGKDRALNFDPCCISYFTNGEYILLGGSDK  244 (1081)
T ss_pred             CCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-------eecccccCCCCchhheeccCCcEEEEccCCC
Confidence            7789999999852      7888888999999988621       1222222233567999999999999999987

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.55  E-value=2.1e-12  Score=110.57  Aligned_cols=153  Identities=15%  Similarity=0.160  Sum_probs=120.5

Q ss_pred             cccEEEEeecCCEEEEecCCCcEEEEeCCC--ccee---eecCCCCeeEEEEeCCCCEEEEEe--CCCcEEEEecCCCCC
Q 043707          123 EGHIYSLAASGDLLYTGSDSKNIRVWKNLK--EFSG---FKSNSGLVKAIIITGDSNKIFTGH--QDGKIRIWKVSRKNP  195 (347)
Q Consensus       123 ~~~V~~l~~~~~~l~tg~~dg~I~vwd~~~--~~~~---~~~h~~~V~~l~~sp~~~~l~s~~--~Dg~I~vwd~~~~~~  195 (347)
                      ...|.++..+.++|+.+-++. |+|||+..  .+.+   ...+...+.++.+++++.+++-=+  ..|.|.|||+.+-+.
T Consensus        87 pt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~  165 (391)
T KOG2110|consen   87 PTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQP  165 (391)
T ss_pred             CCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccccee
Confidence            346888888999998888764 99999653  3333   334555677777777777877533  468999999987654


Q ss_pred             ceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCc-EEEEeCCCCEEEEEEe
Q 043707          196 SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKT-LKVWRISDCKCLESIN  274 (347)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~-i~vwdl~~~~~~~~~~  274 (347)
                      .....                                .|.+.+.|++|+++|.+|++++..|+ |+|+.+.+|+.+.+|+
T Consensus       166 v~~I~--------------------------------aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR  213 (391)
T KOG2110|consen  166 VNTIN--------------------------------AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR  213 (391)
T ss_pred             eeEEE--------------------------------ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee
Confidence            33322                                49999999999999999999999998 7899999999999997


Q ss_pred             cC--CCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccC
Q 043707          275 AH--DDAINSVVAGFDS-LVFTGSADGTVKVWRRELQ  308 (347)
Q Consensus       275 ~h--~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~  308 (347)
                      ..  -..|.+++|++++ +|++.+.-++|.||.++..
T Consensus       214 RG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  214 RGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             CCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence            43  3457899999998 8888888999999999753

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.54  E-value=5.5e-12  Score=115.57  Aligned_cols=197  Identities=29%  Similarity=0.493  Sum_probs=145.6

Q ss_pred             ceeEeeeeccccEEEEee--cCCEEEEecC-CCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCC-EEEEEeCCCcEEE
Q 043707          114 GLIGSIVRKEGHIYSLAA--SGDLLYTGSD-SKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSN-KIFTGHQDGKIRI  187 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~--~~~~l~tg~~-dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~-~l~s~~~Dg~I~v  187 (347)
                      ..+..+..|...|.++.+  ++.+++.++. |+.+++|+..  .....+.+|...|.+++|+|++. .+++++.|+.|++
T Consensus       146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~  225 (466)
T COG2319         146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL  225 (466)
T ss_pred             eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence            566778889999987775  4667888885 9999999976  46777888999999999999987 5666699999999


Q ss_pred             EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 043707          188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC  267 (347)
Q Consensus       188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~  267 (347)
                      ||...+.....                               ....|...+ ...|++++.++++++.|+.+++|+++..
T Consensus       226 wd~~~~~~~~~-------------------------------~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~  273 (466)
T COG2319         226 WDLSTGKLLRS-------------------------------TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSS  273 (466)
T ss_pred             EECCCCcEEee-------------------------------ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCC
Confidence            98774432211                               111355554 3389999889999999999999999876


Q ss_pred             EE-EEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEe-cC
Q 043707          268 KC-LESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCG-SS  344 (347)
Q Consensus       268 ~~-~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sg-s~  344 (347)
                      .. +..+..|...+.++.|.|++ .+++++.|+.+++|+........  ...  ...|...+..+.|.+++..++.+ ..
T Consensus       274 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (466)
T COG2319         274 SSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS--SLT--LKGHEGPVSSLSFSPDGSLLVSGGSD  349 (466)
T ss_pred             CcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEE--Eee--ecccCCceEEEEECCCCCEEEEeecC
Confidence            64 55556788999999999965 67778888999999887543211  111  34677789999994332455555 45


Q ss_pred             CC
Q 043707          345 DG  346 (347)
Q Consensus       345 DG  346 (347)
                      |+
T Consensus       350 d~  351 (466)
T COG2319         350 DG  351 (466)
T ss_pred             CC
Confidence            43

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=6e-14  Score=125.43  Aligned_cols=162  Identities=14%  Similarity=0.225  Sum_probs=125.9

Q ss_pred             ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeee
Q 043707          154 FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIR  233 (347)
Q Consensus       154 ~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (347)
                      .+.+.+|++.|.|+.|+.+|.+|++|+.|-.+.|||.-..+....+..                               +
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T-------------------------------g   91 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIST-------------------------------G   91 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeec-------------------------------c
Confidence            456789999999999999999999999999999999986654443332                               5


Q ss_pred             cCCCeeEEEEcCC--CCEEEEEeCCCcEEEEeCCCC----------EEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCc
Q 043707          234 HYDAVSCLSLNAE--QGLLYSGSWDKTLKVWRISDC----------KCLESINAHDDAINSVVAGFDS--LVFTGSADGT  299 (347)
Q Consensus       234 h~~~V~~l~~~~~--~~~l~s~s~dg~i~vwdl~~~----------~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~  299 (347)
                      |...|.++.|-|.  ..++++|..|..|+++|+...          +....+..|...|..|+-.|++  .+.++++||+
T Consensus        92 HtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGt  171 (758)
T KOG1310|consen   92 HTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGT  171 (758)
T ss_pred             cccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcc
Confidence            9999999999994  678999999999999999742          3455667899999999998887  8899999999


Q ss_pred             EEEEEcccCCccc----eeeehhhhhccCCcEEEEEEccCC-CEEEEecCCC
Q 043707          300 VKVWRRELQGKGT----KHFLAQVLLKQENAITALAVNQES-AVVYCGSSDG  346 (347)
Q Consensus       300 I~vwd~~~~~~~~----~~~~~~~~~~h~~~V~~l~~~p~~-~~l~sgs~DG  346 (347)
                      |+-+|++......    ....+..+...--...++..+|.. .+|++|+.|-
T Consensus       172 irQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdp  223 (758)
T KOG1310|consen  172 IRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDP  223 (758)
T ss_pred             eeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCc
Confidence            9999998422110    011111122223467889999966 7899998874

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.53  E-value=5.3e-13  Score=112.52  Aligned_cols=154  Identities=18%  Similarity=0.289  Sum_probs=121.9

Q ss_pred             eccccEEEEeec-------CCEEEEecCCCcEEEEeCCCc--ceeee-----cCCCCeeEEEEeCC----CCEEEEEeCC
Q 043707          121 RKEGHIYSLAAS-------GDLLYTGSDSKNIRVWKNLKE--FSGFK-----SNSGLVKAIIITGD----SNKIFTGHQD  182 (347)
Q Consensus       121 ~h~~~V~~l~~~-------~~~l~tg~~dg~I~vwd~~~~--~~~~~-----~h~~~V~~l~~sp~----~~~l~s~~~D  182 (347)
                      .|+.+|+.++++       ...++|.+.+ .+.+|+....  ++.++     .|......++|+-+    ..+++.|+.-
T Consensus        36 d~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~  114 (385)
T KOG1034|consen   36 DHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYL  114 (385)
T ss_pred             cCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecce
Confidence            466778888875       3467776654 6788863322  12222     36667788888763    3378889999


Q ss_pred             CcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEE
Q 043707          183 GKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKV  261 (347)
Q Consensus       183 g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~v  261 (347)
                      |.|||.|+.+++.....                                .+|...|+.+.++|+ .+++++++.|..|++
T Consensus       115 GvIrVid~~~~~~~~~~--------------------------------~ghG~sINeik~~p~~~qlvls~SkD~svRl  162 (385)
T KOG1034|consen  115 GVIRVIDVVSGQCSKNY--------------------------------RGHGGSINEIKFHPDRPQLVLSASKDHSVRL  162 (385)
T ss_pred             eEEEEEecchhhhccce--------------------------------eccCccchhhhcCCCCCcEEEEecCCceEEE
Confidence            99999999887643322                                269999999999996 579999999999999


Q ss_pred             EeCCCCEEEEEE---ecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEccc
Q 043707          262 WRISDCKCLESI---NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRREL  307 (347)
Q Consensus       262 wdl~~~~~~~~~---~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~  307 (347)
                      |++++..|+..|   .+|.+.|.++.|++++ +|++++.|.+|++|++..
T Consensus       163 wnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~  212 (385)
T KOG1034|consen  163 WNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV  212 (385)
T ss_pred             EeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence            999999999887   5799999999999998 999999999999999973

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.51  E-value=7.8e-12  Score=107.10  Aligned_cols=185  Identities=16%  Similarity=0.151  Sum_probs=134.2

Q ss_pred             cEEEEeecCCEEEEecCCC--cEEEEeCCCccee-eecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeee
Q 043707          125 HIYSLAASGDLLYTGSDSK--NIRVWKNLKEFSG-FKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRV  201 (347)
Q Consensus       125 ~V~~l~~~~~~l~tg~~dg--~I~vwd~~~~~~~-~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~  201 (347)
                      .|..+-++..++|..+.+.  .+++.+..+.... -......|.++.++.+  +|+++-++ .|.|||+++.+.......
T Consensus        48 ~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t  124 (391)
T KOG2110|consen   48 SIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIET  124 (391)
T ss_pred             EEEEeecccceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhc
Confidence            4556668888777766554  4777776544221 1123467999998655  77777765 499999998865433221


Q ss_pred             cccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEe--CCCcEEEEeCCCCEEEEEEecCCCc
Q 043707          202 GSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGS--WDKTLKVWRISDCKCLESINAHDDA  279 (347)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s--~dg~i~vwdl~~~~~~~~~~~h~~~  279 (347)
                      .  |                           .+...+..+++++.+.+|+--+  ..|.|.|||+.+.+++..+.+|++.
T Consensus       125 ~--~---------------------------~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~  175 (391)
T KOG2110|consen  125 T--P---------------------------PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGP  175 (391)
T ss_pred             c--C---------------------------CCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCc
Confidence            1  0                           1455576777777777777543  3688999999999999999999999


Q ss_pred             EEEEEeCCCC-EEEEEeCCCc-EEEEEcccCCccceeeehhhhhcc--CCcEEEEEEccCCCEEEEecCCCC
Q 043707          280 INSVVAGFDS-LVFTGSADGT-VKVWRRELQGKGTKHFLAQVLLKQ--ENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       280 v~~i~~~~~~-~l~s~~~dg~-I~vwd~~~~~~~~~~~~~~~~~~h--~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      +.+++|+++| +|||+++.|+ ||||.+..+++      +..+..-  -..|.+|+|+|++++|++.|..+|
T Consensus       176 lAalafs~~G~llATASeKGTVIRVf~v~~G~k------l~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT  241 (391)
T KOG2110|consen  176 LAALAFSPDGTLLATASEKGTVIRVFSVPEGQK------LYEFRRGTYPVSIYSLSFSPDSQFLAASSNTET  241 (391)
T ss_pred             eeEEEECCCCCEEEEeccCceEEEEEEcCCccE------eeeeeCCceeeEEEEEEECCCCCeEEEecCCCe
Confidence            9999999999 9999998885 69999975543      3333222  346899999999999999887664

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.51  E-value=6.7e-13  Score=111.56  Aligned_cols=156  Identities=14%  Similarity=0.148  Sum_probs=126.1

Q ss_pred             CCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCee
Q 043707          160 NSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVS  239 (347)
Q Consensus       160 h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  239 (347)
                      -..+|+|.+|++|.+.++.+.....|.||.....+.-....  .                           +..|...|+
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~h--t---------------------------ls~Hd~~vt   59 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAH--T---------------------------LSEHDKIVT   59 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceece--e---------------------------hhhhCccee
Confidence            34789999999999999999999999999988765211111  0                           114999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCC-C--EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceee
Q 043707          240 CLSLNAEQGLLYSGSWDKTLKVWRISD-C--KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHF  315 (347)
Q Consensus       240 ~l~~~~~~~~l~s~s~dg~i~vwdl~~-~--~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~  315 (347)
                      +|.|+|..+.|++++.|..-+||.... +  ++...+..+..+.++|.|+|.+ .||+|+....|.||-.+.+.   ...
T Consensus        60 gvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN---dWW  136 (361)
T KOG1523|consen   60 GVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN---DWW  136 (361)
T ss_pred             EEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccc---cee
Confidence            999999999999999999999999843 2  4555666788899999999986 99999999999999987443   222


Q ss_pred             e-hhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          316 L-AQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       316 ~-~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      . .+.-..+...|+++.|+|++-+|++||.|+.
T Consensus       137 VsKhikkPirStv~sldWhpnnVLlaaGs~D~k  169 (361)
T KOG1523|consen  137 VSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGK  169 (361)
T ss_pred             hhhhhCCccccceeeeeccCCcceecccccCcc
Confidence            2 2333456789999999999999999999973

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.50  E-value=4.8e-13  Score=127.85  Aligned_cols=241  Identities=20%  Similarity=0.270  Sum_probs=149.2

Q ss_pred             CCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcccccccceeEeeeeccccEEEEeecCCEEEEecCCCcEE
Q 043707           67 GTRTPTSGEASPYLMSPWNNQPVSPYTKSPWLMPPYSPNENLLSSCNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIR  146 (347)
Q Consensus        67 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~l~~h~~~V~~l~~~~~~l~tg~~dg~I~  146 (347)
                      +++.-+....+......|..  .....+.|-+...|.+-...+....        ..+.|+++.-...+|+++++-..|+
T Consensus      1121 ~D~aLlLtas~dGvIRIwk~--y~~~~~~~eLVTaw~~Ls~~~~~~r--------~~~~v~dWqQ~~G~Ll~tGd~r~IR 1190 (1387)
T KOG1517|consen 1121 QDDALLLTASSDGVIRIWKD--YADKWKKPELVTAWSSLSDQLPGAR--------GTGLVVDWQQQSGHLLVTGDVRSIR 1190 (1387)
T ss_pred             cchhheeeeccCceEEEecc--cccccCCceeEEeeccccccCccCC--------CCCeeeehhhhCCeEEecCCeeEEE
Confidence            33444445555566666654  3333244444444444333322111        1233444443333444444478999


Q ss_pred             EEeCCCcceeee---cCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEE
Q 043707          147 VWKNLKEFSGFK---SNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVE  222 (347)
Q Consensus       147 vwd~~~~~~~~~---~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (347)
                      |||..++.....   +-...|+++.-+- .|+.|+.|..||.||+||.+........                       
T Consensus      1191 IWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v----------------------- 1247 (1387)
T KOG1517|consen 1191 IWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLV----------------------- 1247 (1387)
T ss_pred             EEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccc-----------------------
Confidence            999776543322   2334567665543 5789999999999999999876432111                       


Q ss_pred             EeecceeeeeecCCC--eeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCEE--EEEEecCC---CcEEEEEeCCCC-EEEE
Q 043707          223 VRRNRNVLKIRHYDA--VSCLSLNAEQG-LLYSGSWDKTLKVWRISDCKC--LESINAHD---DAINSVVAGFDS-LVFT  293 (347)
Q Consensus       223 ~~~~~~~~~~~h~~~--V~~l~~~~~~~-~l~s~s~dg~i~vwdl~~~~~--~~~~~~h~---~~v~~i~~~~~~-~l~s  293 (347)
                            ..+..|.+.  |..+.+.+.|- .|++|+.||.|++||+|....  ..++..|-   +.++++..+++. .+|+
T Consensus      1248 ------~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAs 1321 (1387)
T KOG1517|consen 1248 ------CVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIAS 1321 (1387)
T ss_pred             ------eeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeee
Confidence                  112247766  99999998654 599999999999999997422  22233332   358999999886 7788


Q ss_pred             EeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          294 GSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       294 ~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      |+. +.|+||++..+....-..-...+....+.+.+++|+|-.-+||+|+.|.+
T Consensus      1322 Gs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~ 1374 (1387)
T KOG1517|consen 1322 GSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADST 1374 (1387)
T ss_pred             cCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCce
Confidence            877 99999999743221111111112223457899999999889999988753

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.48  E-value=3.5e-12  Score=123.76  Aligned_cols=204  Identities=15%  Similarity=0.226  Sum_probs=138.4

Q ss_pred             ccceeEeeeeccccEEEEee---cCCEEEEecCCCcEEEEeCCCcc---------eeeecCCCCeeEEEEeCCCCEEEEE
Q 043707          112 CNGLIGSIVRKEGHIYSLAA---SGDLLYTGSDSKNIRVWKNLKEF---------SGFKSNSGLVKAIIITGDSNKIFTG  179 (347)
Q Consensus       112 ~~~~i~~l~~h~~~V~~l~~---~~~~l~tg~~dg~I~vwd~~~~~---------~~~~~h~~~V~~l~~sp~~~~l~s~  179 (347)
                      .+.+|..|..|...|..++.   ++.++++|+.||+|++|+..+..         .++......+.++...+.++.+|.+
T Consensus      1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred             cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence            34468889999998877764   35799999999999999954332         2233346789999999999999999


Q ss_pred             eCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCC-eeEEEEcC-CC-CEEEEEeCC
Q 043707          180 HQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA-VSCLSLNA-EQ-GLLYSGSWD  256 (347)
Q Consensus       180 ~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~~~-~~-~~l~s~s~d  256 (347)
                      +.||.|++.+++..+.........                        +.......+. |.+.++.. .+ ..|+.+..-
T Consensus      1117 t~DG~v~~~~id~~~~~~~~~~~~------------------------ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~ 1172 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQV------------------------RIPNLKKDGVVVSMHAFTAIVQSHVLVYATDL 1172 (1431)
T ss_pred             cCCCeEEEEEccccccccceeeee------------------------ecccccCCCceEEeecccccccceeEEEEEec
Confidence            999999999998642111110000                        0000011222 23333332 23 377788888


Q ss_pred             CcEEEEeCCCCEEEEEEe--cCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEc
Q 043707          257 KTLKVWRISDCKCLESIN--AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVN  333 (347)
Q Consensus       257 g~i~vwdl~~~~~~~~~~--~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~  333 (347)
                      +.|..||++....+.+++  ...+.|++++.+|.+ +++.|...|.+.+||++....     ....-..+..+|+.|..+
T Consensus      1173 ~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~-----i~sw~~P~~~~i~~v~~~ 1247 (1431)
T KOG1240|consen 1173 SRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP-----ILSWEHPARAPIRHVWLC 1247 (1431)
T ss_pred             cceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCce-----eecccCcccCCcceEEee
Confidence            999999999876555443  345789999999987 999999999999999985432     122223445788888887


Q ss_pred             cCC---CEEEEecC
Q 043707          334 QES---AVVYCGSS  344 (347)
Q Consensus       334 p~~---~~l~sgs~  344 (347)
                      |-.   ..+++++.
T Consensus      1248 ~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1248 PTYPQESVSVSAGS 1261 (1431)
T ss_pred             ccCCCCceEEEecc
Confidence            733   45665554

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.46  E-value=6.3e-12  Score=118.35  Aligned_cols=210  Identities=20%  Similarity=0.343  Sum_probs=145.9

Q ss_pred             EeecCCEEEEecCCCcEEEEeC--CCcceeeecCCCCeeEEEEeCCC---CEEEEEeCCCcEEEEecCCCCCceeeeecc
Q 043707          129 LAASGDLLYTGSDSKNIRVWKN--LKEFSGFKSNSGLVKAIIITGDS---NKIFTGHQDGKIRIWKVSRKNPSVHKRVGS  203 (347)
Q Consensus       129 l~~~~~~l~tg~~dg~I~vwd~--~~~~~~~~~h~~~V~~l~~sp~~---~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~  203 (347)
                      ++.++++++.... ..|.||..  +.+...+..|..++..+.+.|..   .++++++.||+|++||...+..........
T Consensus        24 fSnD~k~l~~~~~-~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~  102 (792)
T KOG1963|consen   24 FSNDAKFLFLCTG-NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNL  102 (792)
T ss_pred             cccCCcEEEEeeC-CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCC
Confidence            4456676666654 48999974  45677889999999999998843   468899999999999998776432221110


Q ss_pred             c-------ccccc---eE-Eec--------------------------------------------cCCCeEEE------
Q 043707          204 L-------PTFKD---YV-KSS--------------------------------------------VNPKNYVE------  222 (347)
Q Consensus       204 ~-------~~~~~---~~-~~~--------------------------------------------~~~~~~~~------  222 (347)
                      .       +...+   .+ ...                                            .+...+..      
T Consensus       103 ~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~  182 (792)
T KOG1963|consen  103 PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCK  182 (792)
T ss_pred             ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeee
Confidence            0       00000   00 000                                            00000000      


Q ss_pred             -----Eeec-----ceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC----CEEEEEEecCCCcEEEEEeCCC
Q 043707          223 -----VRRN-----RNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD----CKCLESINAHDDAINSVVAGFD  288 (347)
Q Consensus       223 -----~~~~-----~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~----~~~~~~~~~h~~~v~~i~~~~~  288 (347)
                           +...     .......|...++|.+++|.++++++|..||+|.+|.--.    ......+..|...|+++.|+++
T Consensus       183 ~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~  262 (792)
T KOG1963|consen  183 IHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSD  262 (792)
T ss_pred             EEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecC
Confidence                 0000     0011124667789999999999999999999999996422    2345678899999999999999


Q ss_pred             C-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          289 S-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       289 ~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      | +|++||..|.+-+|.+.++++       +.|..-.++|..+.++||+.+.+....|.
T Consensus       263 G~~LlSGG~E~VLv~Wq~~T~~k-------qfLPRLgs~I~~i~vS~ds~~~sl~~~DN  314 (792)
T KOG1963|consen  263 GAYLLSGGREGVLVLWQLETGKK-------QFLPRLGSPILHIVVSPDSDLYSLVLEDN  314 (792)
T ss_pred             CceEeecccceEEEEEeecCCCc-------ccccccCCeeEEEEEcCCCCeEEEEecCc
Confidence            8 999999999999999986643       34445578999999999998877776664

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.46  E-value=2.2e-11  Score=114.69  Aligned_cols=218  Identities=17%  Similarity=0.254  Sum_probs=131.8

Q ss_pred             EEEeecCCEEEEecCCCcEEEEeCC------CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeee
Q 043707          127 YSLAASGDLLYTGSDSKNIRVWKNL------KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKR  200 (347)
Q Consensus       127 ~~l~~~~~~l~tg~~dg~I~vwd~~------~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~  200 (347)
                      .+++++++++++|..||.|.+|...      ...+.+..|...|.+++|+++|.+|++|+..|.+.+|.+.+++.....+
T Consensus       211 ~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPR  290 (792)
T KOG1963|consen  211 VALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPR  290 (792)
T ss_pred             EEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccc
Confidence            3455679999999999999999632      2366788899999999999999999999999999999999987544333


Q ss_pred             eccc-------ccccceEEeccCCCeEEEEee--cceee------------eeecCCCeeEEEEcCCCCEEEEEeCCCcE
Q 043707          201 VGSL-------PTFKDYVKSSVNPKNYVEVRR--NRNVL------------KIRHYDAVSCLSLNAEQGLLYSGSWDKTL  259 (347)
Q Consensus       201 ~~~~-------~~~~~~~~~~~~~~~~~~~~~--~~~~~------------~~~h~~~V~~l~~~~~~~~l~s~s~dg~i  259 (347)
                      ++..       +....+.....+.. +.-+..  .....            ..+..+-.+.++++|..+.++-.+..|.|
T Consensus       291 Lgs~I~~i~vS~ds~~~sl~~~DNq-I~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~v  369 (792)
T KOG1963|consen  291 LGSPILHIVVSPDSDLYSLVLEDNQ-IHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHV  369 (792)
T ss_pred             cCCeeEEEEEcCCCCeEEEEecCce-EEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceE
Confidence            3321       11111111111111 111110  00000            00112234455566644455555556666


Q ss_pred             EEEeCCCCEEEEE-------------------------------------------------------------------
Q 043707          260 KVWRISDCKCLES-------------------------------------------------------------------  272 (347)
Q Consensus       260 ~vwdl~~~~~~~~-------------------------------------------------------------------  272 (347)
                      .+||+-+.+.+..                                                                   
T Consensus       370 Q~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~  449 (792)
T KOG1963|consen  370 QFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTK  449 (792)
T ss_pred             EEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEE
Confidence            6665532211111                                                                   


Q ss_pred             -EecCCCcEEEEEeCC-C-C-EEEEEeCCCcEEEEEcccCCc----cceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707          273 -INAHDDAINSVVAGF-D-S-LVFTGSADGTVKVWRRELQGK----GTKHFLAQVLLKQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       273 -~~~h~~~v~~i~~~~-~-~-~l~s~~~dg~I~vwd~~~~~~----~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                       ...|...+...++.+ . . .+++++.||.++||-+.....    ...+.+...-.-|..++++++|+.||..|+++-+
T Consensus       450 I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~  529 (792)
T KOG1963|consen  450 INNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFD  529 (792)
T ss_pred             EecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecC
Confidence             123555554444433 2 2 788999999999998843222    2233333333347889999999999988877654


Q ss_pred             C
Q 043707          345 D  345 (347)
Q Consensus       345 D  345 (347)
                      |
T Consensus       530 ~  530 (792)
T KOG1963|consen  530 D  530 (792)
T ss_pred             C
Confidence            4

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.46  E-value=3.1e-14  Score=132.81  Aligned_cols=157  Identities=20%  Similarity=0.404  Sum_probs=126.9

Q ss_pred             CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeee
Q 043707          152 KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLK  231 (347)
Q Consensus       152 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (347)
                      +.++.+.+|..+|+|+.|...|.++++|+.|..|+||.+++........                               
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~r-------------------------------  229 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCR-------------------------------  229 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCC-------------------------------
Confidence            3456678999999999999999999999999999999988775432222                               


Q ss_pred             eecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCcc
Q 043707          232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKG  311 (347)
Q Consensus       232 ~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~  311 (347)
                       +|.+.|+.++.+....++++++.|..|++|.+.++.++..+.+|.++|++|+|+|-.   +.+.||++++||.+.....
T Consensus       230 -Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~  305 (1113)
T KOG0644|consen  230 -GHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRI  305 (1113)
T ss_pred             -CCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc---cCCCCCceEeccccccccc
Confidence             699999999999999999999999999999999999999999999999999999965   7889999999999833221


Q ss_pred             ceeeehhhhh-ccCCcEEEEEEccCCCEEEEecCCC
Q 043707          312 TKHFLAQVLL-KQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       312 ~~~~~~~~~~-~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      .   ...-+. .-..-+-.+-|..++...++++.|+
T Consensus       306 y---~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~  338 (1113)
T KOG0644|consen  306 Y---VPRPLKFTEKDLVDSILFENNGDRFLTGSRDG  338 (1113)
T ss_pred             c---CCCCCCcccccceeeeeccccccccccccCCc
Confidence            1   111111 1234566777777777788888776

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.46  E-value=7e-13  Score=120.56  Aligned_cols=162  Identities=13%  Similarity=0.132  Sum_probs=124.1

Q ss_pred             cceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeee
Q 043707          153 EFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLK  231 (347)
Q Consensus       153 ~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (347)
                      .+..+.+|...|.++.|+| +..+|++|+.|..|+||.+..+.......                          .....
T Consensus        71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSa--------------------------pe~~~  124 (1012)
T KOG1445|consen   71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSA--------------------------PEIDV  124 (1012)
T ss_pred             ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCC--------------------------cceee
Confidence            3556788999999999999 56699999999999999998442111100                          01111


Q ss_pred             eecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCc
Q 043707          232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGK  310 (347)
Q Consensus       232 ~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~  310 (347)
                      -+..-.|.|+.|+|...-|+..+..|+++|||+.+++.+..+.+|.+.|.+..|+.|| +|++++.|..|+|||.+....
T Consensus       125 g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~  204 (1012)
T KOG1445|consen  125 GGGNVIVECLRFHPTADGILASGAHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASME  204 (1012)
T ss_pred             cCCceEEEEeecccCcCceEEeccCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCC
Confidence            1234468899999975444444457899999999999999999999999999999998 889999999999999986655


Q ss_pred             cceeeehhhhhccCCc-EEEEEEccCCCEEEEecCC
Q 043707          311 GTKHFLAQVLLKQENA-ITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       311 ~~~~~~~~~~~~h~~~-V~~l~~~p~~~~l~sgs~D  345 (347)
                           +++...+|.+. =..+.|--+...|++.|.+
T Consensus       205 -----piQ~te~H~~~rdsRv~w~Gn~~rlisTGF~  235 (1012)
T KOG1445|consen  205 -----PIQTTEGHGGMRDSRVLWAGNWERLISTGFT  235 (1012)
T ss_pred             -----ccccccccccchhheeeeccchhhhhhcccc
Confidence                 77777888653 3457777666677776654

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=2.9e-11  Score=103.44  Aligned_cols=184  Identities=15%  Similarity=0.199  Sum_probs=125.6

Q ss_pred             ccEEEEee---cCCEEEEecCCCcEEEEeCC------Cc----------ceeeecCCCCeeEEEEeCCCCEEEEEeC-CC
Q 043707          124 GHIYSLAA---SGDLLYTGSDSKNIRVWKNL------KE----------FSGFKSNSGLVKAIIITGDSNKIFTGHQ-DG  183 (347)
Q Consensus       124 ~~V~~l~~---~~~~l~tg~~dg~I~vwd~~------~~----------~~~~~~h~~~V~~l~~sp~~~~l~s~~~-Dg  183 (347)
                      ..|.|++|   +++-|+.|+..| |.+|...      +.          +....+| ..|+.++|.+||..+++++. |.
T Consensus       141 rnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gss  218 (445)
T KOG2139|consen  141 RNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSS  218 (445)
T ss_pred             cceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcc
Confidence            46888887   466888888765 9999632      11          1112234 68999999999999999984 56


Q ss_pred             cEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 043707          184 KIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWR  263 (347)
Q Consensus       184 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwd  263 (347)
                      .|+|||.+++.......                                ...+.++-+.|+||+.+|+.+.-|+..++|.
T Consensus       219 si~iWdpdtg~~~pL~~--------------------------------~glgg~slLkwSPdgd~lfaAt~davfrlw~  266 (445)
T KOG2139|consen  219 SIMIWDPDTGQKIPLIP--------------------------------KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQ  266 (445)
T ss_pred             eEEEEcCCCCCcccccc--------------------------------cCCCceeeEEEcCCCCEEEEecccceeeeeh
Confidence            79999999987544332                                1456788899999999999999999999996


Q ss_pred             CCCCEEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccc---------eeeehhhh-----hcc----
Q 043707          264 ISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGT---------KHFLAQVL-----LKQ----  323 (347)
Q Consensus       264 l~~~~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~---------~~~~~~~~-----~~h----  323 (347)
                      ............-.+.|....|+|+|  +|++.+..-.  +|.+...++..         ...++..+     ...    
T Consensus       267 e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~--lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~  344 (445)
T KOG2139|consen  267 ENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPR--LYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLC  344 (445)
T ss_pred             hcccceecceeccCCceeeeeecCCCCEEEEEEcCCce--EEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccc
Confidence            55443333333345589999999998  5555554443  44443222210         11111111     111    


Q ss_pred             CCcEEEEEEccCCCEEEEec
Q 043707          324 ENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       324 ~~~V~~l~~~p~~~~l~sgs  343 (347)
                      .+.+.+++|.|.|.+||+.=
T Consensus       345 cgeaq~lawDpsGeyLav~f  364 (445)
T KOG2139|consen  345 CGEAQCLAWDPSGEYLAVIF  364 (445)
T ss_pred             cCccceeeECCCCCEEEEEE
Confidence            45788999999999998753

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.45  E-value=1.7e-11  Score=101.23  Aligned_cols=109  Identities=16%  Similarity=0.283  Sum_probs=85.2

Q ss_pred             CCCeeEEEEeCCCCEEEEE--eCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCe
Q 043707          161 SGLVKAIIITGDSNKIFTG--HQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAV  238 (347)
Q Consensus       161 ~~~V~~l~~sp~~~~l~s~--~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  238 (347)
                      .++|.+++|+|+++.|+.+  ..++.|.+||++... ..  .                                -+...+
T Consensus        59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~-i~--~--------------------------------~~~~~~  103 (194)
T PF08662_consen   59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKK-IF--S--------------------------------FGTQPR  103 (194)
T ss_pred             CCceEEEEECcCCCEEEEEEccCCcccEEEcCcccE-eE--e--------------------------------ecCCCc
Confidence            4579999999999987655  367799999996221 11  1                                134567


Q ss_pred             eEEEEcCCCCEEEEEeCC---CcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEe------CCCcEEEEEcc
Q 043707          239 SCLSLNAEQGLLYSGSWD---KTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGS------ADGTVKVWRRE  306 (347)
Q Consensus       239 ~~l~~~~~~~~l~s~s~d---g~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~------~dg~I~vwd~~  306 (347)
                      ..+.|+|+|++|++++.+   |.|.+||+++.+.+..++ |. .+..++|+|+| +|+++.      .|+.++||+..
T Consensus       104 n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  104 NTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             eEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence            889999999999998753   669999999999988876 33 36899999999 666665      38999999986

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.44  E-value=1.5e-12  Score=113.26  Aligned_cols=148  Identities=22%  Similarity=0.359  Sum_probs=112.3

Q ss_pred             eEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEc
Q 043707          165 KAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLN  244 (347)
Q Consensus       165 ~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~  244 (347)
                      .+++|+.+|..+++|+.||++|||+...........                                .|...|.+|.|+
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~--------------------------------~~~~eV~DL~FS  195 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEI--------------------------------AHHAEVKDLDFS  195 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhH--------------------------------hhcCccccceeC
Confidence            789999999999999999999999976654322221                                488999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCEEEEEEec--CCCcEEEEEeCCCC-----EEEE-EeCCCcEEEEEcccCCccceeee
Q 043707          245 AEQGLLYSGSWDKTLKVWRISDCKCLESINA--HDDAINSVVAGFDS-----LVFT-GSADGTVKVWRRELQGKGTKHFL  316 (347)
Q Consensus       245 ~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~--h~~~v~~i~~~~~~-----~l~s-~~~dg~I~vwd~~~~~~~~~~~~  316 (347)
                      ||+++|++-+.| ..+||+++++.++.....  .+.-...+.|+.|+     ++++ ....+.|+.||+...... ....
T Consensus       196 ~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~  273 (398)
T KOG0771|consen  196 PDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLR  273 (398)
T ss_pred             CCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccc
Confidence            999999999999 899999999977766642  23345666777665     4444 345678888888654432 2223


Q ss_pred             hhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          317 AQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       317 ~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      ..........|++++.+++|++++.|+.||
T Consensus       274 ~~~~~~~~~siSsl~VS~dGkf~AlGT~dG  303 (398)
T KOG0771|consen  274 LRKKIKRFKSISSLAVSDDGKFLALGTMDG  303 (398)
T ss_pred             hhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence            333334455899999999999999999998

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.43  E-value=4.1e-12  Score=121.62  Aligned_cols=176  Identities=20%  Similarity=0.336  Sum_probs=124.3

Q ss_pred             CEEEEecCCCcEEEEeCC----Cc---ceee---ecC----CCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceee
Q 043707          134 DLLYTGSDSKNIRVWKNL----KE---FSGF---KSN----SGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHK  199 (347)
Q Consensus       134 ~~l~tg~~dg~I~vwd~~----~~---~~~~---~~h----~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~  199 (347)
                      .+|++|+.||.||||+..    +.   +..+   .++    .+.=.-+.|..+..+|++++.-..|||||..........
T Consensus      1124 aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~di 1203 (1387)
T KOG1517|consen 1124 ALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADI 1203 (1387)
T ss_pred             hheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeec
Confidence            489999999999999722    11   1111   111    122234577776667888877889999999876533222


Q ss_pred             eecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCE---EEEEEec
Q 043707          200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCK---CLESINA  275 (347)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~vwdl~~~~---~~~~~~~  275 (347)
                      ..                               +....|+.++-+- .|+.++.|..||.+++||.|...   .+...+.
T Consensus      1204 P~-------------------------------~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~ 1252 (1387)
T KOG1517|consen 1204 PY-------------------------------GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYRE 1252 (1387)
T ss_pred             cc-------------------------------CCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecc
Confidence            21                               2445566665544 37999999999999999998653   4666778


Q ss_pred             CCCc--EEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhcc---CCcEEEEEEccCCCEEEEecC
Q 043707          276 HDDA--INSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQ---ENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       276 h~~~--v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h---~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      |...  |..+.+.+.|  .|++|+.||.|++||++...+   . .......|   .+.++++..+++...+|+|+.
T Consensus      1253 h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~---e-~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1253 HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK---E-TFLTIVAHWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred             cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc---c-ccceeeeccccCccceeeeeccCCCeeeecCc
Confidence            8877  9899888766  799999999999999996422   1 11122223   236999999999999999985

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.42  E-value=1.7e-11  Score=101.15  Aligned_cols=101  Identities=8%  Similarity=0.138  Sum_probs=76.8

Q ss_pred             cCCCeeEEEEcCCCCEEEEE--eCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeC---CCcEEEEEccc
Q 043707          234 HYDAVSCLSLNAEQGLLYSG--SWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSA---DGTVKVWRREL  307 (347)
Q Consensus       234 h~~~V~~l~~~~~~~~l~s~--s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~---dg~I~vwd~~~  307 (347)
                      ..++|..++|+|++..+++.  ..++.|.+||++ ++.+..+.  ...++.|.|+|+| +|++++.   .|.|.+||.+.
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~  134 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK  134 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence            45679999999999887554  457899999996 67777764  5678899999998 7777664   46799999983


Q ss_pred             CCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707          308 QGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       308 ~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                      ..      .+... .| ..++.++|+|+|++|+++...
T Consensus       135 ~~------~i~~~-~~-~~~t~~~WsPdGr~~~ta~t~  164 (194)
T PF08662_consen  135 KK------KISTF-EH-SDATDVEWSPDGRYLATATTS  164 (194)
T ss_pred             CE------Eeecc-cc-CcEEEEEEcCCCCEEEEEEec
Confidence            32      23222 22 357899999999999998753

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.42  E-value=1.1e-11  Score=106.93  Aligned_cols=201  Identities=12%  Similarity=0.163  Sum_probs=149.3

Q ss_pred             EeeeeccccEEEEeecCCEEEEecCCCcEEEEeCC------CcceeeecCCCCeeEEEEeCC-CCEEEEEeCC--CcEEE
Q 043707          117 GSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNL------KEFSGFKSNSGLVKAIIITGD-SNKIFTGHQD--GKIRI  187 (347)
Q Consensus       117 ~~l~~h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~------~~~~~~~~h~~~V~~l~~sp~-~~~l~s~~~D--g~I~v  187 (347)
                      .++...++.|..+......|++|-.+|.+.+|...      ..+..+..+ ..+..+.-++. ...+++|+..  ..+.+
T Consensus        99 ~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lki  177 (412)
T KOG3881|consen   99 KTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKI  177 (412)
T ss_pred             cccccccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceee
Confidence            34445566777777777788999999999999744      223333333 45666766663 3456679988  88999


Q ss_pred             EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC--CCEEEEEeCCCcEEEEeCC
Q 043707          188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE--QGLLYSGSWDKTLKVWRIS  265 (347)
Q Consensus       188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~dg~i~vwdl~  265 (347)
                      ||+...+++....  ..|.            .         .+-+.-.-.++.+.|-+.  ...|++++.-+.+++||.+
T Consensus       178 wdle~~~qiw~aK--Nvpn------------D---------~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~  234 (412)
T KOG3881|consen  178 WDLEQSKQIWSAK--NVPN------------D---------RLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTR  234 (412)
T ss_pred             eecccceeeeecc--CCCC------------c---------cccceeeeeeccceecCCCCCceEEEEecceeEEEecCc
Confidence            9998774322111  0100            0         001123345677888887  8899999999999999998


Q ss_pred             CC-EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          266 DC-KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       266 ~~-~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                      .+ +++.+|..-+.+++++...|++ +|++|..-+.+..||++....     +...+.+..+.|++|..+|..++|++||
T Consensus       235 ~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl-----~g~~~kg~tGsirsih~hp~~~~las~G  309 (412)
T KOG3881|consen  235 HQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL-----LGCGLKGITGSIRSIHCHPTHPVLASCG  309 (412)
T ss_pred             ccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCcee-----eccccCCccCCcceEEEcCCCceEEeec
Confidence            65 5889998889999999999988 899999999999999985432     4445778899999999999999999999


Q ss_pred             CCC
Q 043707          344 SDG  346 (347)
Q Consensus       344 ~DG  346 (347)
                      -|.
T Consensus       310 LDR  312 (412)
T KOG3881|consen  310 LDR  312 (412)
T ss_pred             cce
Confidence            986

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.42  E-value=5.9e-11  Score=106.92  Aligned_cols=187  Identities=12%  Similarity=0.212  Sum_probs=117.9

Q ss_pred             EEeecCCEEEEec-CCCcEEEEeCCCc------ceeeecCCCCeeEEEEeCCCCEEEEEe-CCCcEEEEecCCCCCceee
Q 043707          128 SLAASGDLLYTGS-DSKNIRVWKNLKE------FSGFKSNSGLVKAIIITGDSNKIFTGH-QDGKIRIWKVSRKNPSVHK  199 (347)
Q Consensus       128 ~l~~~~~~l~tg~-~dg~I~vwd~~~~------~~~~~~h~~~V~~l~~sp~~~~l~s~~-~Dg~I~vwd~~~~~~~~~~  199 (347)
                      ++.+++++|++++ .++.|.+|+..+.      ...+ .+.....+++++|+++++++++ .++.|.+||+++.......
T Consensus        86 ~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~  164 (330)
T PRK11028         86 STDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ  164 (330)
T ss_pred             EECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence            4456788777765 4889999986421      1112 1234567889999998886555 5699999999863221100


Q ss_pred             eecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCC--C--EEEEEEe
Q 043707          200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRISD--C--KCLESIN  274 (347)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~vwdl~~--~--~~~~~~~  274 (347)
                      ....                          ...........+.|+|++++++++.. +++|.+||+..  +  +.+..+.
T Consensus       165 ~~~~--------------------------~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~  218 (330)
T PRK11028        165 EPAE--------------------------VTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD  218 (330)
T ss_pred             CCCc--------------------------eecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe
Confidence            0000                          00001234567899999999988876 89999999973  2  3344443


Q ss_pred             cC------CCcEEEEEeCCCC-EEEEEe-CCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707          275 AH------DDAINSVVAGFDS-LVFTGS-ADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       275 ~h------~~~v~~i~~~~~~-~l~s~~-~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      .+      ......+.++|++ +++++. .++.|.+|++...+.  ...+...... ......++|+|+|++|+++..
T Consensus       219 ~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~--~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~  293 (330)
T PRK11028        219 MMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGS--VLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQ  293 (330)
T ss_pred             cCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCC--eEEEeEEEec-cccCCceEECCCCCEEEEEEc
Confidence            22      1123468899998 666664 578999999964332  1112222111 124568999999999998765

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=5.6e-12  Score=117.41  Aligned_cols=162  Identities=12%  Similarity=0.091  Sum_probs=107.2

Q ss_pred             CCcEEEEeCC-CcceeeecCCCCeeEEEEeCCCCEEEEEeCC---CcEEEEecCCCCCceeeeecccccccceEEeccCC
Q 043707          142 SKNIRVWKNL-KEFSGFKSNSGLVKAIIITGDSNKIFTGHQD---GKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNP  217 (347)
Q Consensus       142 dg~I~vwd~~-~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D---g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (347)
                      +..|++||.. ...+.+..|...+...+|+|+|++|+.++.+   ..|++||+.+++......                 
T Consensus       183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~-----------------  245 (429)
T PRK01742        183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS-----------------  245 (429)
T ss_pred             eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-----------------
Confidence            4689999854 3355667788889999999999999888754   369999998764321111                 


Q ss_pred             CeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEe-CCCcEEEE--eCCCCEEEEEEecCCCcEEEEEeCCCC-EEE-
Q 043707          218 KNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVW--RISDCKCLESINAHDDAINSVVAGFDS-LVF-  292 (347)
Q Consensus       218 ~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~vw--dl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~-  292 (347)
                                      .......++|+||++.|+.+. .+|.+.||  |+.+++ +..+..+...+....|+||+ .|+ 
T Consensus       246 ----------------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f  308 (429)
T PRK01742        246 ----------------FRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILF  308 (429)
T ss_pred             ----------------CCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEE
Confidence                            112234689999999887764 67876555  665554 44566677778889999998 444 


Q ss_pred             EEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707          293 TGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       293 s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                      ++..++...||++...+...  ..   + .+..  ..++|+|+|+.|+.++.+
T Consensus       309 ~s~~~g~~~I~~~~~~~~~~--~~---l-~~~~--~~~~~SpDG~~ia~~~~~  353 (429)
T PRK01742        309 TSDRSGSPQVYRMSASGGGA--SL---V-GGRG--YSAQISADGKTLVMINGD  353 (429)
T ss_pred             EECCCCCceEEEEECCCCCe--EE---e-cCCC--CCccCCCCCCEEEEEcCC
Confidence            55568889999876433211  11   1 1222  345667777766665543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.40  E-value=2.4e-11  Score=103.90  Aligned_cols=190  Identities=14%  Similarity=0.237  Sum_probs=126.9

Q ss_pred             EEEEeecCC--EEEEecCCCcEEEEeCC-Ccceeeec-CCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCcee-e
Q 043707          126 IYSLAASGD--LLYTGSDSKNIRVWKNL-KEFSGFKS-NSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVH-K  199 (347)
Q Consensus       126 V~~l~~~~~--~l~tg~~dg~I~vwd~~-~~~~~~~~-h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~-~  199 (347)
                      +..++|+..  .++.+..|-.|++||.. +....++. -...|+|++|-| .+..|+.|+..| |.+|.....-.... .
T Consensus       101 lr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~  179 (445)
T KOG2139|consen  101 LRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNI  179 (445)
T ss_pred             eeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccccccc
Confidence            444556544  57788999999999844 33333333 235799999999 455788888654 88998764321111 0


Q ss_pred             eecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCCCEEEEEEecCCC
Q 043707          200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRISDCKCLESINAHDD  278 (347)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~vwdl~~~~~~~~~~~h~~  278 (347)
                      ..... .                   ...+........|+.|.|++||..|++++. |..|.|||..++..+.-....-+
T Consensus       180 ~~~s~-~-------------------~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glg  239 (445)
T KOG2139|consen  180 RMMST-H-------------------HLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLG  239 (445)
T ss_pred             ccccc-c-------------------chhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCC
Confidence            00000 0                   000011112368999999999999999886 67899999998876655544556


Q ss_pred             cEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEe
Q 043707          279 AINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCG  342 (347)
Q Consensus       279 ~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sg  342 (347)
                      .+.-+.|+||+ +|+++.-|+..++|+....--     ...-.. -.+.|...+|+|+|++|+-.
T Consensus       240 g~slLkwSPdgd~lfaAt~davfrlw~e~q~wt-----~erw~l-gsgrvqtacWspcGsfLLf~  298 (445)
T KOG2139|consen  240 GFSLLKWSPDGDVLFAATCDAVFRLWQENQSWT-----KERWIL-GSGRVQTACWSPCGSFLLFA  298 (445)
T ss_pred             ceeeEEEcCCCCEEEEecccceeeeehhcccce-----ecceec-cCCceeeeeecCCCCEEEEE
Confidence            78889999998 999999999999996652211     111112 23489999999999776544

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.40  E-value=1.6e-11  Score=105.90  Aligned_cols=145  Identities=13%  Similarity=0.202  Sum_probs=121.9

Q ss_pred             CCEEEEecCC--CcEEEEeCCCcceeeecCC-----------CCeeEEEEeCC--CCEEEEEeCCCcEEEEecCCCCCce
Q 043707          133 GDLLYTGSDS--KNIRVWKNLKEFSGFKSNS-----------GLVKAIIITGD--SNKIFTGHQDGKIRIWKVSRKNPSV  197 (347)
Q Consensus       133 ~~~l~tg~~d--g~I~vwd~~~~~~~~~~h~-----------~~V~~l~~sp~--~~~l~s~~~Dg~I~vwd~~~~~~~~  197 (347)
                      ..++++|+..  ..+.|||+.+..+.+.+..           -.++++.|.+.  ...|+++..-+.||+||.+.++...
T Consensus       161 p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV  240 (412)
T KOG3881|consen  161 PYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPV  240 (412)
T ss_pred             CceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcce
Confidence            5588889998  8899999887766665532           24678899886  7899999999999999999765332


Q ss_pred             eeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEE-EecC
Q 043707          198 HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES-INAH  276 (347)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~-~~~h  276 (347)
                      ....                               --..+++++..-|+++.+++|..-|.+..+|++.++.+.. +++.
T Consensus       241 ~~fd-------------------------------~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~  289 (412)
T KOG3881|consen  241 AQFD-------------------------------FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI  289 (412)
T ss_pred             eEec-------------------------------cccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc
Confidence            2211                               1467899999999999999999999999999999998877 8889


Q ss_pred             CCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccC
Q 043707          277 DDAINSVVAGFDS-LVFTGSADGTVKVWRRELQ  308 (347)
Q Consensus       277 ~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~  308 (347)
                      .+.|.+|.++|.+ +++++|-|+.|||+|+.+.
T Consensus       290 tGsirsih~hp~~~~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  290 TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             cCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence            9999999999986 9999999999999999863

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=2.5e-11  Score=113.08  Aligned_cols=185  Identities=15%  Similarity=0.088  Sum_probs=115.5

Q ss_pred             EeeeeccccEEEEee--cCCEEEEecCC---CcEEEEeCCCc-ceeeecCCCCeeEEEEeCCCCEEEEEe-CCCcEEEE-
Q 043707          117 GSIVRKEGHIYSLAA--SGDLLYTGSDS---KNIRVWKNLKE-FSGFKSNSGLVKAIIITGDSNKIFTGH-QDGKIRIW-  188 (347)
Q Consensus       117 ~~l~~h~~~V~~l~~--~~~~l~tg~~d---g~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s~~-~Dg~I~vw-  188 (347)
                      ..+..|...+....|  +|+.|+..+.+   ..|++||.... ...+....+....++|+|||++|+.+. .+|.+.|| 
T Consensus       197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~  276 (429)
T PRK01742        197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYV  276 (429)
T ss_pred             eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEE
Confidence            445556666766554  57777776543   46999996533 122222233445789999999888765 68877666 


Q ss_pred             -ecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEe-CCCcEEEEeCCC
Q 043707          189 -KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISD  266 (347)
Q Consensus       189 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~vwdl~~  266 (347)
                       |+.+++..   .+                              ..+...+....|+|+++.|+..+ .++...||++..
T Consensus       277 ~d~~~~~~~---~l------------------------------t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~  323 (429)
T PRK01742        277 MGANGGTPS---QL------------------------------TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA  323 (429)
T ss_pred             EECCCCCeE---ee------------------------------ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence             44443211   11                              12455677899999999776554 578888887643


Q ss_pred             C-EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707          267 C-KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       267 ~-~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      . .....+ .+..  ....|+|++ .|+..+.++ +.+||+..+..   ..+..   .+  ....+.|+|+|++|+.++.
T Consensus       324 ~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~---~~lt~---~~--~~~~~~~sPdG~~i~~~s~  391 (429)
T PRK01742        324 SGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGST---EVLSS---TF--LDESPSISPNGIMIIYSST  391 (429)
T ss_pred             CCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCe---EEecC---CC--CCCCceECCCCCEEEEEEc
Confidence            2 222223 3433  457899998 666666654 55699875432   01111   11  2356789999999999988


Q ss_pred             CC
Q 043707          345 DG  346 (347)
Q Consensus       345 DG  346 (347)
                      +|
T Consensus       392 ~g  393 (429)
T PRK01742        392 QG  393 (429)
T ss_pred             CC
Confidence            76

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.39  E-value=9.8e-12  Score=107.26  Aligned_cols=161  Identities=15%  Similarity=0.195  Sum_probs=121.4

Q ss_pred             eeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCcee-eeecccccccceEEeccCCCeEEEEeecceeeeee
Q 043707          155 SGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVH-KRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIR  233 (347)
Q Consensus       155 ~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (347)
                      +.+.+|.+.|.+|.|+.++++|++|+.|..++||+++..-.... +.++                          +.-..
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~--------------------------~~~~~  103 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIG--------------------------VMEHP  103 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCce--------------------------eccCc
Confidence            45678999999999999999999999999999999875321111 0000                          00013


Q ss_pred             cCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEec--CCCcEEEEEeCCC-CEEEEEeCCCcEEEEEcccCCc
Q 043707          234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA--HDDAINSVVAGFD-SLVFTGSADGTVKVWRRELQGK  310 (347)
Q Consensus       234 h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~--h~~~v~~i~~~~~-~~l~s~~~dg~I~vwd~~~~~~  310 (347)
                      |...|.|++|......|++|..++++...|+.+.+.+..+..  ..+.|..+..+|- ..|++.+.++.|.+||.+....
T Consensus       104 H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~  183 (609)
T KOG4227|consen  104 HRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN  183 (609)
T ss_pred             cccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCC
Confidence            778999999999999999999999999999999998887752  2348999999885 5999999999999999985543


Q ss_pred             cceeeehhhhhccCCcEEEEEEccCC-CEEEEecC
Q 043707          311 GTKHFLAQVLLKQENAITALAVNQES-AVVYCGSS  344 (347)
Q Consensus       311 ~~~~~~~~~~~~h~~~V~~l~~~p~~-~~l~sgs~  344 (347)
                      ..   .+..+.........+.|+|.. .+|++.+.
T Consensus       184 ~~---~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~  215 (609)
T KOG4227|consen  184 PI---SLVLPANSGKNFYTAEFHPETPALILVNSE  215 (609)
T ss_pred             CC---ceeeecCCCccceeeeecCCCceeEEeccc
Confidence            11   122223345578899999977 55665554

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.39  E-value=5.3e-12  Score=112.85  Aligned_cols=104  Identities=25%  Similarity=0.271  Sum_probs=84.4

Q ss_pred             ecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC----------------------------------------CEEEEE
Q 043707          233 RHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD----------------------------------------CKCLES  272 (347)
Q Consensus       233 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~----------------------------------------~~~~~~  272 (347)
                      .|.+.|.|-.|+|+|.-|++++.||.|++|.-..                                        ...+-.
T Consensus       102 AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~  181 (737)
T KOG1524|consen  102 AHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIR  181 (737)
T ss_pred             hhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeE
Confidence            5888999999999999999999999999997421                                        001223


Q ss_pred             EecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707          273 INAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       273 ~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      .++|++-|.++.|++.. ++++|++|-..+|||..  +.     .+.....|+.+|++++|+|+ ..++.+|.
T Consensus       182 WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~--G~-----~Lf~S~~~ey~ITSva~npd-~~~~v~S~  246 (737)
T KOG1524|consen  182 WRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ--GA-----NLFTSAAEEYAITSVAFNPE-KDYLLWSY  246 (737)
T ss_pred             EeccCcEEEEeecCccccceeecCCceeEEeeccc--Cc-----ccccCChhccceeeeeeccc-cceeeeee
Confidence            56899999999999976 99999999999999986  22     56677789999999999999 66666653

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.37  E-value=4e-12  Score=111.76  Aligned_cols=176  Identities=17%  Similarity=0.317  Sum_probs=134.4

Q ss_pred             CEEEEecCCCcEEEEeC--CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceE
Q 043707          134 DLLYTGSDSKNIRVWKN--LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYV  211 (347)
Q Consensus       134 ~~l~tg~~dg~I~vwd~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~  211 (347)
                      -+|++++..|.++.-|+  ++.+..+..-.+.+..++-+|-...+-+|...|+|.+|.-...++.....           
T Consensus       222 fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL-----------  290 (545)
T KOG1272|consen  222 FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL-----------  290 (545)
T ss_pred             heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH-----------
Confidence            37888888998888884  45566777777889999999977799999999999999988776544332           


Q ss_pred             EeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEE
Q 043707          212 KSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLV  291 (347)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l  291 (347)
                                           .|.++|.+|++.++|.+++|.+.|..++|||++....+.++.. .-+...++++..|+|
T Consensus       291 ---------------------cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglL  348 (545)
T KOG1272|consen  291 ---------------------CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLL  348 (545)
T ss_pred             ---------------------hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccccccccce
Confidence                                 3999999999999999999999999999999999988777765 445677888877777


Q ss_pred             EEEeCCCcEEEEEcccCCccceeeehhhhhcc--CCcEEEEEEccCCCEEEEecCCC
Q 043707          292 FTGSADGTVKVWRRELQGKGTKHFLAQVLLKQ--ENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       292 ~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h--~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      |.+ ....|.||.-...+.+ .  ....+..|  ...|..|.|.|-...|-.|-.-|
T Consensus       349 A~~-~G~~v~iw~d~~~~s~-~--~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G  401 (545)
T KOG1272|consen  349 ALS-YGDHVQIWKDALKGSG-H--GETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG  401 (545)
T ss_pred             eee-cCCeeeeehhhhcCCC-C--CCcchhhhccCcccccceeccHHHeeeccccCC
Confidence            655 5568999965433211 1  11122223  45899999999777776665544

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.35  E-value=3.9e-11  Score=102.04  Aligned_cols=220  Identities=14%  Similarity=0.208  Sum_probs=139.7

Q ss_pred             cccEEEEee--cCCEEEEecCCCcEEEEeCCCc-------ceeeecCC------------CCeeEEEEeCCC--CEEEEE
Q 043707          123 EGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKE-------FSGFKSNS------------GLVKAIIITGDS--NKIFTG  179 (347)
Q Consensus       123 ~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~~-------~~~~~~h~------------~~V~~l~~sp~~--~~l~s~  179 (347)
                      ..-|.++.+  .|++|+||+.+|.|.++...+.       ...++.|.            ..|..+.|.+++  ..++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            345778876  4999999999999999963322       33455553            358889998855  468888


Q ss_pred             eCCCcEEEEecCCCCCceeee---ecccccccc-eEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC
Q 043707          180 HQDGKIRIWKVSRKNPSVHKR---VGSLPTFKD-YVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW  255 (347)
Q Consensus       180 ~~Dg~I~vwd~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~  255 (347)
                      ..|.+|++|.+..+.......   ....+.... +-................+...-.|...|++++++.|+..++++. 
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-  183 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-  183 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence            899999999998664322100   000000000 000001111111222233344456999999999999999888876 


Q ss_pred             CCcEEEEeCCCCE---EEEEEecC-----CCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCcccee----------e
Q 043707          256 DKTLKVWRISDCK---CLESINAH-----DDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKH----------F  315 (347)
Q Consensus       256 dg~i~vwdl~~~~---~~~~~~~h-----~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~----------~  315 (347)
                      |=.|.+|.+.-..   .+..++.+     ..-|++..|+|..  .++-.+..|+|++.|++.......+          .
T Consensus       184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~  263 (433)
T KOG1354|consen  184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS  263 (433)
T ss_pred             ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence            7889999986332   23333444     2457888999975  7888889999999999843221111          0


Q ss_pred             ehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          316 LAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       316 ~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                      ....+..--..|.++.|+++|++|++-.
T Consensus       264 ~rsffseiIsSISDvKFs~sGryilsRD  291 (433)
T KOG1354|consen  264 SRSFFSEIISSISDVKFSHSGRYILSRD  291 (433)
T ss_pred             chhhHHHHhhhhhceEEccCCcEEEEec
Confidence            1111222335789999999999998743

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.34  E-value=1.7e-11  Score=117.38  Aligned_cols=142  Identities=22%  Similarity=0.316  Sum_probs=119.4

Q ss_pred             CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccce
Q 043707          133 GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDY  210 (347)
Q Consensus       133 ~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~  210 (347)
                      .-++++|+.-+.|.+|+..  +....+.+|.+.|..+.|+-+|+++++++.|.++|+|++++.+......          
T Consensus       145 ~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~----------  214 (967)
T KOG0974|consen  145 ELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTG----------  214 (967)
T ss_pred             EEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccc----------
Confidence            4489999999999999844  2222578999999999999999999999999999999999987544221          


Q ss_pred             EEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCC-CcEEEEEeCCCC
Q 043707          211 VKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHD-DAINSVVAGFDS  289 (347)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~-~~v~~i~~~~~~  289 (347)
                                           .+|...|..+.|.|.  .+++++.|.+.++|+. .++.+..+..|. ..|..++..++.
T Consensus       215 ---------------------fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~  270 (967)
T KOG0974|consen  215 ---------------------FGHSARVWACCFLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGV  270 (967)
T ss_pred             ---------------------ccccceeEEEEeccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCc
Confidence                                 259999999999997  9999999999999976 456666888785 468899988876


Q ss_pred             -EEEEEeCCCcEEEEEcccC
Q 043707          290 -LVFTGSADGTVKVWRRELQ  308 (347)
Q Consensus       290 -~l~s~~~dg~I~vwd~~~~  308 (347)
                       .++|++.|+.+++||+...
T Consensus       271 ~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  271 IIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             eEEEeeccCcchhhhhhhcc
Confidence             8889999999999998743

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.32  E-value=3.2e-10  Score=102.15  Aligned_cols=175  Identities=11%  Similarity=0.204  Sum_probs=112.7

Q ss_pred             EEEecCCCcEEEEeCCC-----cceeeecCCCCeeEEEEeCCCCEEEEEe-CCCcEEEEecCC-CCCceeeeeccccccc
Q 043707          136 LYTGSDSKNIRVWKNLK-----EFSGFKSNSGLVKAIIITGDSNKIFTGH-QDGKIRIWKVSR-KNPSVHKRVGSLPTFK  208 (347)
Q Consensus       136 l~tg~~dg~I~vwd~~~-----~~~~~~~h~~~V~~l~~sp~~~~l~s~~-~Dg~I~vwd~~~-~~~~~~~~~~~~~~~~  208 (347)
                      +++...++.|++|+...     .+..+. +.+....++++|++++|++++ .++.|.+|+++. +........       
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-------   76 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-------   76 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-------
Confidence            44447789999999642     223332 345677899999999887765 578899999973 221111110       


Q ss_pred             ceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCC-C---EEEEEEecCCCcEEEE
Q 043707          209 DYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRISD-C---KCLESINAHDDAINSV  283 (347)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~vwdl~~-~---~~~~~~~~h~~~v~~i  283 (347)
                                              ........++++|++++|++++. ++.|.+|++.+ +   +.+..+. +......+
T Consensus        77 ------------------------~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~  131 (330)
T PRK11028         77 ------------------------PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSA  131 (330)
T ss_pred             ------------------------cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEe
Confidence                                    12234567999999999988875 88999999964 2   2333333 22345678


Q ss_pred             EeCCCC-EE-EEEeCCCcEEEEEcccCCccceee-ehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707          284 VAGFDS-LV-FTGSADGTVKVWRRELQGKGTKHF-LAQVLLKQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       284 ~~~~~~-~l-~s~~~dg~I~vwd~~~~~~~~~~~-~~~~~~~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      +++|++ ++ ++...++.|.+||+...+...... ..... ........++|+|++++|+++..
T Consensus       132 ~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~-~~g~~p~~~~~~pdg~~lyv~~~  194 (330)
T PRK11028        132 NIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTT-VEGAGPRHMVFHPNQQYAYCVNE  194 (330)
T ss_pred             EeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceec-CCCCCCceEEECCCCCEEEEEec
Confidence            899997 55 455567999999997533200000 00011 11334678999999999988765

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.32  E-value=3.8e-12  Score=111.95  Aligned_cols=158  Identities=16%  Similarity=0.187  Sum_probs=118.7

Q ss_pred             CCCcEEEEe-CCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCe
Q 043707          141 DSKNIRVWK-NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKN  219 (347)
Q Consensus       141 ~dg~I~vwd-~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (347)
                      ....++||| .+.++..++.| ..|..+.|-|..-+|++++..|.++.-|+..++.......                  
T Consensus       189 QK~y~yvYD~~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t------------------  249 (545)
T KOG1272|consen  189 QKKYVYVYDNNGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT------------------  249 (545)
T ss_pred             hhceEEEecCCCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHc------------------
Confidence            345566666 33455555554 4577778888766777778888888888887765433322                  


Q ss_pred             EEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCC
Q 043707          220 YVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADG  298 (347)
Q Consensus       220 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg  298 (347)
                                    ..+.+..|+-+|-...+-+|...|+|.+|.-...+++..+-.|.++|.+|++.++| +++|.+.|.
T Consensus       250 --------------~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr  315 (545)
T KOG1272|consen  250 --------------GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDR  315 (545)
T ss_pred             --------------cCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccccc
Confidence                          45667788889988899999999999999999999999999999999999999998 999999999


Q ss_pred             cEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCE
Q 043707          299 TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAV  338 (347)
Q Consensus       299 ~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~  338 (347)
                      .|+|||++...+      ++.+.. ..+...++++..|-+
T Consensus       316 ~~kIWDlR~~~q------l~t~~t-p~~a~~ls~SqkglL  348 (545)
T KOG1272|consen  316 KVKIWDLRNFYQ------LHTYRT-PHPASNLSLSQKGLL  348 (545)
T ss_pred             ceeEeeeccccc------cceeec-CCCccccccccccce
Confidence            999999985432      222222 236677888866543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.32  E-value=8.1e-11  Score=112.88  Aligned_cols=176  Identities=16%  Similarity=0.159  Sum_probs=137.1

Q ss_pred             cCCEEEEecCCCcEEEEeCCCcceeee-cCCCC-----eeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccc
Q 043707          132 SGDLLYTGSDSKNIRVWKNLKEFSGFK-SNSGL-----VKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLP  205 (347)
Q Consensus       132 ~~~~l~tg~~dg~I~vwd~~~~~~~~~-~h~~~-----V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~  205 (347)
                      ..+.++.+..+..+.+||.......++ .+...     ..-+.++++.-++++|+.-+.|.+|+....+...        
T Consensus        98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~--------  169 (967)
T KOG0974|consen   98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI--------  169 (967)
T ss_pred             hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc--------
Confidence            456788888888999998654322221 12221     2223346677789999999999999987332111        


Q ss_pred             cccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEE-EEecCCCcEEEEE
Q 043707          206 TFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE-SINAHDDAINSVV  284 (347)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~-~~~~h~~~v~~i~  284 (347)
                                              ...+|.+.|-.+.|+.+|+++++.++|+++++|++.+.+.+. ..-+|...|..+.
T Consensus       170 ------------------------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~  225 (967)
T KOG0974|consen  170 ------------------------RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACC  225 (967)
T ss_pred             ------------------------eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEE
Confidence                                    223699999999999999999999999999999999988766 6668999999999


Q ss_pred             eCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhcc-CCcEEEEEEccCCCEEEEecCCCC
Q 043707          285 AGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQ-ENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       285 ~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h-~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      +.|. .+++++.|.+.++|+....       .+..+..| ...|..++..++...+++++.||.
T Consensus       226 ~~~n-~i~t~gedctcrvW~~~~~-------~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~  281 (967)
T KOG0974|consen  226 FLPN-RIITVGEDCTCRVWGVNGT-------QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDST  281 (967)
T ss_pred             eccc-eeEEeccceEEEEEecccc-------eehhhhhhhhcceeEEEEcCCceEEEeeccCcc
Confidence            9988 9999999999999976522       34477777 456999999999999999999984

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.30  E-value=2.2e-10  Score=107.24  Aligned_cols=199  Identities=14%  Similarity=0.138  Sum_probs=124.9

Q ss_pred             CcEEEEeCCCcce--eeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeec----cc-----------
Q 043707          143 KNIRVWKNLKEFS--GFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVG----SL-----------  204 (347)
Q Consensus       143 g~I~vwd~~~~~~--~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~----~~-----------  204 (347)
                      +.+.||++.....  ....-...|.|++|+| +...++.|+.+|.|.+||++...........    ..           
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~  301 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ  301 (555)
T ss_pred             ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence            4799999664422  2223457899999999 7788999999999999999987642111100    00           


Q ss_pred             -ccccceEEeccCCCeEEEEeeccee----eee----------ecCCCeeEEEEcC-CCCEEEEEeCCCcEEEEe---CC
Q 043707          205 -PTFKDYVKSSVNPKNYVEVRRNRNV----LKI----------RHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWR---IS  265 (347)
Q Consensus       205 -~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----------~h~~~V~~l~~~~-~~~~l~s~s~dg~i~vwd---l~  265 (347)
                       ....+++..+.++.......+.-..    ...          .-...+++++|.+ +...++.|+.+|.|.-=.   .+
T Consensus       302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~  381 (555)
T KOG1587|consen  302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT  381 (555)
T ss_pred             cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence             0012344444433333221111100    000          1123477788877 456788888888776622   22


Q ss_pred             CC-----EEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCC-C
Q 043707          266 DC-----KCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQES-A  337 (347)
Q Consensus       266 ~~-----~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~-~  337 (347)
                      ..     +.+..+..|.++|.++.++|=+  .|++++ |-+|+||.......     ++..+..+...|++++|+|-. .
T Consensus       382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~-----Pl~~~~~~~~~v~~vaWSptrpa  455 (555)
T KOG1587|consen  382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIAS-----PLLSLDSSPDYVTDVAWSPTRPA  455 (555)
T ss_pred             ccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCC-----cchhhhhccceeeeeEEcCcCce
Confidence            11     2233556788999999999865  555555 99999998864333     666777777789999999976 5


Q ss_pred             EEEEecCCCC
Q 043707          338 VVYCGSSDGL  347 (347)
Q Consensus       338 ~l~sgs~DG~  347 (347)
                      .++++..||.
T Consensus       456 vF~~~d~~G~  465 (555)
T KOG1587|consen  456 VFATVDGDGN  465 (555)
T ss_pred             EEEEEcCCCc
Confidence            6667766773

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=3.4e-10  Score=105.74  Aligned_cols=161  Identities=7%  Similarity=-0.002  Sum_probs=110.4

Q ss_pred             cEEEEeCC-CcceeeecCCCCeeEEEEeCCCCEEEEEeC---CCcEEEEecCCCCCceeeeecccccccceEEeccCCCe
Q 043707          144 NIRVWKNL-KEFSGFKSNSGLVKAIIITGDSNKIFTGHQ---DGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKN  219 (347)
Q Consensus       144 ~I~vwd~~-~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~---Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (347)
                      .|.++|.. ...+.+..|...+...+|+|||+.|+..+.   +..|.+||+.+++.....                    
T Consensus       183 ~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~--------------------  242 (435)
T PRK05137        183 RLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVG--------------------  242 (435)
T ss_pred             EEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEee--------------------
Confidence            68888854 345567778889999999999999888763   468999999877532111                    


Q ss_pred             EEEEeecceeeeeecCCCeeEEEEcCCCCEEE-EEeCCCc--EEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEe
Q 043707          220 YVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLY-SGSWDKT--LKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGS  295 (347)
Q Consensus       220 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg~--i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~  295 (347)
                                   .+.+.+...+|+|||+.|+ +.+.++.  |++||+.+++. ..+..+........|+||+ .|+..+
T Consensus       243 -------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s  308 (435)
T PRK05137        243 -------------NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFES  308 (435)
T ss_pred             -------------cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEE
Confidence                         2445667889999998765 5555655  77779887654 4455566666778999998 555444


Q ss_pred             -CCC--cEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707          296 -ADG--TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       296 -~dg--~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                       .+|  .|++||+....       .+.+..+...+....|+|+|+.|+..+.+
T Consensus       309 ~~~g~~~Iy~~d~~g~~-------~~~lt~~~~~~~~~~~SpdG~~ia~~~~~  354 (435)
T PRK05137        309 DRSGSPQLYVMNADGSN-------PRRISFGGGRYSTPVWSPRGDLIAFTKQG  354 (435)
T ss_pred             CCCCCCeEEEEECCCCC-------eEEeecCCCcccCeEECCCCCEEEEEEcC
Confidence             444  57777765321       12222234456778999999999876543

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.29  E-value=1.9e-10  Score=104.28  Aligned_cols=172  Identities=16%  Similarity=0.220  Sum_probs=132.0

Q ss_pred             CCEEEEecCCCcEEEEeCCCc--ceeee---cCCCCeeEEEEe--------------------CCCCEEEEEeCCCcEEE
Q 043707          133 GDLLYTGSDSKNIRVWKNLKE--FSGFK---SNSGLVKAIIIT--------------------GDSNKIFTGHQDGKIRI  187 (347)
Q Consensus       133 ~~~l~tg~~dg~I~vwd~~~~--~~~~~---~h~~~V~~l~~s--------------------p~~~~l~s~~~Dg~I~v  187 (347)
                      ..++|....||.+++|+..+.  .+.|.   .-.+...+..|.                    .+...++-|...|.|.+
T Consensus         5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~   84 (541)
T KOG4547|consen    5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL   84 (541)
T ss_pred             hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence            568999999999999995432  22332   223444444442                    22345677777788888


Q ss_pred             EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 043707          188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC  267 (347)
Q Consensus       188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~  267 (347)
                      |++..++........                              .|.+.|.++.++.+-..|++++.|+.+..|+..+.
T Consensus        85 ys~~~g~it~~~st~------------------------------~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~  134 (541)
T KOG4547|consen   85 YSVAGGEITAKLSTD------------------------------KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK  134 (541)
T ss_pred             EEecCCeEEEEEecC------------------------------CCCCcceeeecccccCceEecCCceeEEEEecccc
Confidence            888776543322212                              49999999999999999999999999999999999


Q ss_pred             EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccC-----CCEEEE
Q 043707          268 KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQE-----SAVVYC  341 (347)
Q Consensus       268 ~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~-----~~~l~s  341 (347)
                      +.++.++.....+.+++.+||+ .+++++  ++|++||+++.+      .+..+.+|.++|.+++|.-+     |.++.+
T Consensus       135 ~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~ke------vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLs  206 (541)
T KOG4547|consen  135 VIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKE------VVITFTGHGSPVRTLSFTTLIDGIIGKYVLS  206 (541)
T ss_pred             eeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCce------EEEEecCCCcceEEEEEEEeccccccceeee
Confidence            9999999989999999999998 666665  689999998543      68899999999999999877     666655


Q ss_pred             e
Q 043707          342 G  342 (347)
Q Consensus       342 g  342 (347)
                      +
T Consensus       207 s  207 (541)
T KOG4547|consen  207 S  207 (541)
T ss_pred             c
Confidence            3

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.28  E-value=1.1e-09  Score=92.44  Aligned_cols=82  Identities=17%  Similarity=0.276  Sum_probs=71.1

Q ss_pred             eeeecCCCCeeEEEEeCCCCEEEEEeCCCc-EEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeee
Q 043707          155 SGFKSNSGLVKAIIITGDSNKIFTGHQDGK-IRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIR  233 (347)
Q Consensus       155 ~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~-I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (347)
                      ..+.+|...|.|++.+-+|..+||++..|+ |||||..++....+.+-+.                              
T Consensus       175 ~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~------------------------------  224 (346)
T KOG2111|consen  175 SIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV------------------------------  224 (346)
T ss_pred             eEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC------------------------------
Confidence            446789999999999999999999999998 8999999998665554332                              


Q ss_pred             cCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 043707          234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD  266 (347)
Q Consensus       234 h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~  266 (347)
                      ....|.||+|+|+..+|+++|+.|+++|+.++.
T Consensus       225 d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  225 DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             chheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            446799999999999999999999999999875

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=8.7e-10  Score=102.93  Aligned_cols=188  Identities=14%  Similarity=0.078  Sum_probs=116.9

Q ss_pred             eEeeeeccccEEEEe--ecCCEEEEecC---CCcEEEEeCCCc-ceeeecCCCCeeEEEEeCCCCEEE-EEeCCC--cEE
Q 043707          116 IGSIVRKEGHIYSLA--ASGDLLYTGSD---SKNIRVWKNLKE-FSGFKSNSGLVKAIIITGDSNKIF-TGHQDG--KIR  186 (347)
Q Consensus       116 i~~l~~h~~~V~~l~--~~~~~l~tg~~---dg~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~~~l~-s~~~Dg--~I~  186 (347)
                      ...+..|...+.+..  ++|+.|+..+.   +..|++||.... ...+..+.+...+.+|+|+|+.|+ +.+.+|  .|+
T Consensus       196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy  275 (433)
T PRK04922        196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIY  275 (433)
T ss_pred             ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEE
Confidence            344555555666555  46777776653   346999996533 233344455566889999998775 555565  588


Q ss_pred             EEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CCc--EEEEe
Q 043707          187 IWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKT--LKVWR  263 (347)
Q Consensus       187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~--i~vwd  263 (347)
                      +||+.+++.....                                 .+.......+|+|+++.|+..+. +|.  |+++|
T Consensus       276 ~~d~~~g~~~~lt---------------------------------~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~d  322 (433)
T PRK04922        276 VMDLGSRQLTRLT---------------------------------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVA  322 (433)
T ss_pred             EEECCCCCeEECc---------------------------------cCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence            9998876521110                                 13334456899999998877664 454  66677


Q ss_pred             CCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeC-CC--cEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEE
Q 043707          264 ISDCKCLESINAHDDAINSVVAGFDS-LVFTGSA-DG--TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVV  339 (347)
Q Consensus       264 l~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~-dg--~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l  339 (347)
                      +.+++.. .+..+........|+|++ +|+..+. ++  .|.+||+..+..       ..+. +........|+|||++|
T Consensus       323 l~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~-------~~Lt-~~~~~~~p~~spdG~~i  393 (433)
T PRK04922        323 ASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV-------RTLT-PGSLDESPSFAPNGSMV  393 (433)
T ss_pred             CCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe-------EECC-CCCCCCCceECCCCCEE
Confidence            7666532 333333445568999998 5554433 32  689999864331       1121 22234567999999988


Q ss_pred             EEecCC
Q 043707          340 YCGSSD  345 (347)
Q Consensus       340 ~sgs~D  345 (347)
                      +..+.+
T Consensus       394 ~~~s~~  399 (433)
T PRK04922        394 LYATRE  399 (433)
T ss_pred             EEEEec
Confidence            877654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=8e-10  Score=102.90  Aligned_cols=190  Identities=15%  Similarity=0.078  Sum_probs=114.9

Q ss_pred             EeeeeccccEEEEe--ecCCEEEEecCC---CcEEEEeCCCc-ceeeecCCCCeeEEEEeCCCCEEE-EEeCCCcEEEEe
Q 043707          117 GSIVRKEGHIYSLA--ASGDLLYTGSDS---KNIRVWKNLKE-FSGFKSNSGLVKAIIITGDSNKIF-TGHQDGKIRIWK  189 (347)
Q Consensus       117 ~~l~~h~~~V~~l~--~~~~~l~tg~~d---g~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~~~l~-s~~~Dg~I~vwd  189 (347)
                      ..+..+...+.+..  ++|+.|+..+.+   ..|++||.... ...+....+.+.+.+|+|||+.|+ +.+.+|...||.
T Consensus       189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~  268 (427)
T PRK02889        189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT  268 (427)
T ss_pred             eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEE
Confidence            33445556666555  467777765532   35999997533 233443445677899999998876 567788877776


Q ss_pred             cCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeC--CC
Q 043707          190 VSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRI--SD  266 (347)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~vwdl--~~  266 (347)
                      ++...... ..+.                              .+...+....|+|||+.|+..+. +|...||.+  ..
T Consensus       269 ~d~~~~~~-~~lt------------------------------~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~  317 (427)
T PRK02889        269 VNADGSGL-RRLT------------------------------QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG  317 (427)
T ss_pred             EECCCCCc-EECC------------------------------CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC
Confidence            54321111 1110                              13334556789999998776554 566666654  44


Q ss_pred             CEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCC---cEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEe
Q 043707          267 CKCLESINAHDDAINSVVAGFDS-LVFTGSADG---TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCG  342 (347)
Q Consensus       267 ~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg---~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sg  342 (347)
                      ++. ..+..+........|+|+| +|+..+.++   .|.+||+..+..       ..+.. ........|+|||+.|+.+
T Consensus       318 g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~-------~~lt~-~~~~~~p~~spdg~~l~~~  388 (427)
T PRK02889        318 GAA-QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV-------TALTD-TTRDESPSFAPNGRYILYA  388 (427)
T ss_pred             Cce-EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe-------EEccC-CCCccCceECCCCCEEEEE
Confidence            432 2222233334467899998 665554443   699999875432       11111 1234678999999998887


Q ss_pred             cCCC
Q 043707          343 SSDG  346 (347)
Q Consensus       343 s~DG  346 (347)
                      +.++
T Consensus       389 ~~~~  392 (427)
T PRK02889        389 TQQG  392 (427)
T ss_pred             EecC
Confidence            7654

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.25  E-value=3.4e-11  Score=106.61  Aligned_cols=200  Identities=18%  Similarity=0.237  Sum_probs=146.1

Q ss_pred             ceeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCCCc---ceeeecCCCCeeEEEEeC--CCCEEEEEeCCCcEE
Q 043707          114 GLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE---FSGFKSNSGLVKAIIITG--DSNKIFTGHQDGKIR  186 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~~~---~~~~~~h~~~V~~l~~sp--~~~~l~s~~~Dg~I~  186 (347)
                      .+...|..|.|-|..+.++  |+.|++|+.|..|.+||+...   +.-..+|...|..-.|-|  +.+-|++++.||.|+
T Consensus       133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr  212 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR  212 (559)
T ss_pred             hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence            3677888999999999986  889999999999999996544   334456888888888988  446799999999999


Q ss_pred             EEecCCCCCce-eeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeC
Q 043707          187 IWKVSRKNPSV-HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRI  264 (347)
Q Consensus       187 vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwdl  264 (347)
                      +=.+....... .+.+                              ..|.+.|..++.-|+ ...|++++.|+.+.-+|+
T Consensus       213 ~s~i~~t~~~e~t~rl------------------------------~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dl  262 (559)
T KOG1334|consen  213 VSEILETGYVENTKRL------------------------------APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDL  262 (559)
T ss_pred             eeeeccccceecceec------------------------------ccccCccceeeecCCCCCcccccccccceeeeee
Confidence            88765433221 2222                              249999999999996 567999999999999999


Q ss_pred             CCCEEEEEE---ecCCC---cEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCcccee-----eehhhhh-ccCCcEEEE
Q 043707          265 SDCKCLESI---NAHDD---AINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKH-----FLAQVLL-KQENAITAL  330 (347)
Q Consensus       265 ~~~~~~~~~---~~h~~---~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~-----~~~~~~~-~h~~~V~~l  330 (347)
                      +...+-..+   +.+..   ....|+..|..  .+++|+.|-.+++||.+.-.+....     .+...+. .....|+++
T Consensus       263 r~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl  342 (559)
T KOG1334|consen  263 RQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGL  342 (559)
T ss_pred             ccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeE
Confidence            987654333   33444   56788888865  8999999999999999854432111     1111221 223469999


Q ss_pred             EEccCC-CEEEEec
Q 043707          331 AVNQES-AVVYCGS  343 (347)
Q Consensus       331 ~~~p~~-~~l~sgs  343 (347)
                      +|+.++ .+|++-.
T Consensus       343 ~Ysh~~sElLaSYn  356 (559)
T KOG1334|consen  343 VYSHDGSELLASYN  356 (559)
T ss_pred             EecCCccceeeeec
Confidence            999766 5555543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=1.8e-09  Score=100.93  Aligned_cols=188  Identities=10%  Similarity=0.013  Sum_probs=120.9

Q ss_pred             eEeeeeccccEEEEee--cCCEEEEecC---CCcEEEEeCCCc-ceeeecCCCCeeEEEEeCCCCEEE-EEeCCCc--EE
Q 043707          116 IGSIVRKEGHIYSLAA--SGDLLYTGSD---SKNIRVWKNLKE-FSGFKSNSGLVKAIIITGDSNKIF-TGHQDGK--IR  186 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~--~~~~l~tg~~---dg~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~~~l~-s~~~Dg~--I~  186 (347)
                      ...+..|...+.+..|  +|+.|+..+.   +..|++||.... ...+..+.+.+...+|+|+|+.|+ +.+.++.  |.
T Consensus       194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy  273 (435)
T PRK05137        194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY  273 (435)
T ss_pred             cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence            4456667777777664  6777766542   468999997533 344555667788999999998765 5566665  66


Q ss_pred             EEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CC--cEEEEe
Q 043707          187 IWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DK--TLKVWR  263 (347)
Q Consensus       187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg--~i~vwd  263 (347)
                      +||+.++....   +.                              .+........|+||++.|+..+. +|  .|++||
T Consensus       274 ~~d~~~~~~~~---Lt------------------------------~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d  320 (435)
T PRK05137        274 TMDLRSGTTTR---LT------------------------------DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMN  320 (435)
T ss_pred             EEECCCCceEE---cc------------------------------CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEE
Confidence            67877654211   11                              13444567899999998887664 33  588888


Q ss_pred             CCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeC-C--CcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEE
Q 043707          264 ISDCKCLESINAHDDAINSVVAGFDS-LVFTGSA-D--GTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVV  339 (347)
Q Consensus       264 l~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~-d--g~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l  339 (347)
                      +..++. ..+..+...+....|+|++ .|+.... .  ..|.+||+.....       ..+. ....+..+.|+|||+.|
T Consensus       321 ~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-------~~lt-~~~~~~~p~~spDG~~i  391 (435)
T PRK05137        321 ADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-------RILT-SGFLVEGPTWAPNGRVI  391 (435)
T ss_pred             CCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-------Eecc-CCCCCCCCeECCCCCEE
Confidence            876544 3444345556778899998 5554433 2  3677788743221       1111 12246788999999988


Q ss_pred             EEecCC
Q 043707          340 YCGSSD  345 (347)
Q Consensus       340 ~sgs~D  345 (347)
                      +..+.+
T Consensus       392 ~~~~~~  397 (435)
T PRK05137        392 MFFRQT  397 (435)
T ss_pred             EEEEcc
Confidence            776543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.23  E-value=1.3e-09  Score=101.40  Aligned_cols=163  Identities=12%  Similarity=0.012  Sum_probs=106.1

Q ss_pred             cEEEEeCC-CcceeeecCCCCeeEEEEeCCCCEEEEEeC---CCcEEEEecCCCCCceeeeecccccccceEEeccCCCe
Q 043707          144 NIRVWKNL-KEFSGFKSNSGLVKAIIITGDSNKIFTGHQ---DGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKN  219 (347)
Q Consensus       144 ~I~vwd~~-~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~---Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (347)
                      .|.+||.. ...+.+..+...+...+|+|||+.|+..+.   +..|.+|++.+++......                   
T Consensus       180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~-------------------  240 (429)
T PRK03629        180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-------------------  240 (429)
T ss_pred             eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-------------------
Confidence            68888854 344555666778999999999999886542   3579999998765321111                   


Q ss_pred             EEEEeecceeeeeecCCCeeEEEEcCCCCEEEEE-eCCC--cEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEe
Q 043707          220 YVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSG-SWDK--TLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGS  295 (347)
Q Consensus       220 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~dg--~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~  295 (347)
                                    ....+..+.|+|||+.|+.. +.+|  .|++||+.+++... +..+...+....|+||+ .|+..+
T Consensus       241 --------------~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s  305 (429)
T PRK03629        241 --------------FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTS  305 (429)
T ss_pred             --------------CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEe
Confidence                          22234468999999987754 4455  48899998876543 44444567788999998 555444


Q ss_pred             -CCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707          296 -ADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       296 -~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                       .++...||.+...+.     ....+..+........|+|||++|+..+.+
T Consensus       306 ~~~g~~~Iy~~d~~~g-----~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~  351 (429)
T PRK03629        306 DQAGRPQVYKVNINGG-----APQRITWEGSQNQDADVSSDGKFMVMVSSN  351 (429)
T ss_pred             CCCCCceEEEEECCCC-----CeEEeecCCCCccCEEECCCCCEEEEEEcc
Confidence             455666665443222     111222233445678999999998876543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.23  E-value=5.9e-10  Score=103.79  Aligned_cols=174  Identities=10%  Similarity=0.074  Sum_probs=109.8

Q ss_pred             CCEEEEecCC--CcEEEEeCC-CcceeeecCCCCeeEEEEeCCCCEEEEEeCC---CcEEEEecCCCCCceeeeeccccc
Q 043707          133 GDLLYTGSDS--KNIRVWKNL-KEFSGFKSNSGLVKAIIITGDSNKIFTGHQD---GKIRIWKVSRKNPSVHKRVGSLPT  206 (347)
Q Consensus       133 ~~~l~tg~~d--g~I~vwd~~-~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D---g~I~vwd~~~~~~~~~~~~~~~~~  206 (347)
                      +++.+.....  ..|.++|.. ...+.+..+...+.+.+|+|+|+.|+..+.+   ..|.+||+.+++.....       
T Consensus       164 ~~iayv~~~~~~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~-------  236 (427)
T PRK02889        164 TRIAYVIKTGNRYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA-------  236 (427)
T ss_pred             cEEEEEEccCCccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee-------
Confidence            4444443332  356666753 3345556677889999999999998877643   35999999877532111       


Q ss_pred             ccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEE-EEeCCCcEEEEe--CCCCEEEEEEecCCCcEEEE
Q 043707          207 FKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLY-SGSWDKTLKVWR--ISDCKCLESINAHDDAINSV  283 (347)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg~i~vwd--l~~~~~~~~~~~h~~~v~~i  283 (347)
                                                .....+...+|+||++.|+ +.+.+|...||.  +..+ .+..+..+.......
T Consensus       237 --------------------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~-~~~~lt~~~~~~~~~  289 (427)
T PRK02889        237 --------------------------NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS-GLRRLTQSSGIDTEP  289 (427)
T ss_pred             --------------------------cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCC-CcEECCCCCCCCcCe
Confidence                                      1234456789999998776 567788766665  4443 345555555556678


Q ss_pred             EeCCCC-EEE-EEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707          284 VAGFDS-LVF-TGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       284 ~~~~~~-~l~-s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                      .|+||| .|+ ++..+|...||.+...+...     ..+..+.......+|+|+|++|+..+.+
T Consensus       290 ~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-----~~lt~~g~~~~~~~~SpDG~~Ia~~s~~  348 (427)
T PRK02889        290 FFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-----QRVTFTGSYNTSPRISPDGKLLAYISRV  348 (427)
T ss_pred             EEcCCCCEEEEEecCCCCcEEEEEECCCCce-----EEEecCCCCcCceEECCCCCEEEEEEcc
Confidence            899998 454 44456777888765332211     1111112234467899999999877654

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.23  E-value=4.9e-10  Score=93.53  Aligned_cols=168  Identities=20%  Similarity=0.213  Sum_probs=118.7

Q ss_pred             CC-EEEEecCCCcEEEEeCCCc-----ceeeecCC---CCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecc
Q 043707          133 GD-LLYTGSDSKNIRVWKNLKE-----FSGFKSNS---GLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGS  203 (347)
Q Consensus       133 ~~-~l~tg~~dg~I~vwd~~~~-----~~~~~~h~---~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~  203 (347)
                      |+ .|+-+..+|.|.++.....     +..+..-.   ....++.|++.+..++++-.+|.+.+-+........      
T Consensus        84 g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~------  157 (339)
T KOG0280|consen   84 GDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEK------  157 (339)
T ss_pred             ccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeee------
Confidence            55 6777788899999974322     11222211   124577899988899999999998855443332111      


Q ss_pred             cccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCC-CCEEEEE-EecCCCcE
Q 043707          204 LPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRIS-DCKCLES-INAHDDAI  280 (347)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~vwdl~-~~~~~~~-~~~h~~~v  280 (347)
                                              ...+..|..+++...|+. +.+++++|+.|+.+..||+| .++.+.. .+.|...|
T Consensus       158 ------------------------vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV  213 (339)
T KOG0280|consen  158 ------------------------VQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGV  213 (339)
T ss_pred             ------------------------cccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecce
Confidence                                    112235888888888886 45799999999999999999 3444544 56789999


Q ss_pred             EEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCC
Q 043707          281 NSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQES  336 (347)
Q Consensus       281 ~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~  336 (347)
                      .+|..+|..  +|++|+.|..|++||.+..++     ++.. ..-.+.|+.++++|.-
T Consensus       214 ~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k-----Pl~~-~~v~GGVWRi~~~p~~  265 (339)
T KOG0280|consen  214 VSIYSSPPKPTYIATGSYDECIRVLDTRNMGK-----PLFK-AKVGGGVWRIKHHPEI  265 (339)
T ss_pred             EEEecCCCCCceEEEeccccceeeeehhcccC-----cccc-CccccceEEEEecchh
Confidence            999988763  999999999999999997665     2221 1124789999998853

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.21  E-value=2.8e-09  Score=99.23  Aligned_cols=188  Identities=16%  Similarity=0.091  Sum_probs=118.1

Q ss_pred             EeeeeccccEEEEe--ecCCEEEEecCC---CcEEEEeCCCc-ceeeecCCCCeeEEEEeCCCCEEE-EEeCCC--cEEE
Q 043707          117 GSIVRKEGHIYSLA--ASGDLLYTGSDS---KNIRVWKNLKE-FSGFKSNSGLVKAIIITGDSNKIF-TGHQDG--KIRI  187 (347)
Q Consensus       117 ~~l~~h~~~V~~l~--~~~~~l~tg~~d---g~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~~~l~-s~~~Dg--~I~v  187 (347)
                      ..+..+...+....  ++|++|+.+..+   ..|++||.... ...+..+.+.+.+++|+|+++.|+ +...++  .|++
T Consensus       183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~  262 (417)
T TIGR02800       183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYV  262 (417)
T ss_pred             EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEE
Confidence            34444554555544  467777766543   47999997643 344455666777899999998776 444444  5888


Q ss_pred             EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CC--cEEEEeC
Q 043707          188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DK--TLKVWRI  264 (347)
Q Consensus       188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg--~i~vwdl  264 (347)
                      ||+.++......                                 .+........|+|+++.|+..+. ++  .|+++|+
T Consensus       263 ~d~~~~~~~~l~---------------------------------~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~  309 (417)
T TIGR02800       263 MDLDGKQLTRLT---------------------------------NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDA  309 (417)
T ss_pred             EECCCCCEEECC---------------------------------CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence            888765421110                                 13333446789999988876654 33  5788888


Q ss_pred             CCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCC---cEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEE
Q 043707          265 SDCKCLESINAHDDAINSVVAGFDS-LVFTGSADG---TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVY  340 (347)
Q Consensus       265 ~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg---~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~  340 (347)
                      .+++. ..+..+...+....|+|++ +|+.+..++   .|.+||+.....       ..+... .......|+|++++|+
T Consensus       310 ~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-------~~l~~~-~~~~~p~~spdg~~l~  380 (417)
T TIGR02800       310 DGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-------RVLTDT-GLDESPSFAPNGRMIL  380 (417)
T ss_pred             CCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-------EEccCC-CCCCCceECCCCCEEE
Confidence            77654 3444455667788999998 666666554   788888764221       111111 1234568999999888


Q ss_pred             EecCCC
Q 043707          341 CGSSDG  346 (347)
Q Consensus       341 sgs~DG  346 (347)
                      ..+.++
T Consensus       381 ~~~~~~  386 (417)
T TIGR02800       381 YATTRG  386 (417)
T ss_pred             EEEeCC
Confidence            877654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.21  E-value=4.1e-10  Score=101.78  Aligned_cols=186  Identities=13%  Similarity=0.167  Sum_probs=131.9

Q ss_pred             cCCEEEEecCCCcEEEEeCCC--cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccc
Q 043707          132 SGDLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKD  209 (347)
Q Consensus       132 ~~~~l~tg~~dg~I~vwd~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~  209 (347)
                      +.++++.|+. ..|+-+++.+  -+..+....+.+++|.+++...+|++|+.||.|..||.+.+...........-.   
T Consensus       145 scDly~~gsg-~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~---  220 (703)
T KOG2321|consen  145 SCDLYLVGSG-SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVN---  220 (703)
T ss_pred             CccEEEeecC-cceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccC---
Confidence            3455555554 4567676553  366777778999999999987899999999999999999886544333221100   


Q ss_pred             eEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEe-cCCCcEEEEEeCCC
Q 043707          210 YVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN-AHDDAINSVVAGFD  288 (347)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~-~h~~~v~~i~~~~~  288 (347)
                                        ..........|+.+.|+.+|-.+++|..+|.+.|||++..+++..-. ...-+|..+.|.+.
T Consensus       221 ------------------s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~  282 (703)
T KOG2321|consen  221 ------------------SHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT  282 (703)
T ss_pred             ------------------CCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccccc
Confidence                              00000123359999999999999999999999999999998876543 34567889999765


Q ss_pred             C--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          289 S--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       289 ~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      +  --+.......++|||-.++..      .. .......++.+|+-|++.++.++-.++
T Consensus       283 ~~q~~v~S~Dk~~~kiWd~~~Gk~------~a-siEpt~~lND~C~~p~sGm~f~Ane~~  335 (703)
T KOG2321|consen  283 DQQNKVVSMDKRILKIWDECTGKP------MA-SIEPTSDLNDFCFVPGSGMFFTANESS  335 (703)
T ss_pred             CCCceEEecchHHhhhcccccCCc------ee-eccccCCcCceeeecCCceEEEecCCC
Confidence            2  334444667899999876542      11 122344699999999999998886653

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.20  E-value=3.1e-10  Score=94.70  Aligned_cols=181  Identities=12%  Similarity=0.128  Sum_probs=129.2

Q ss_pred             ecCCEEEEecCCCcEEEEe----CCCcceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeecccc
Q 043707          131 ASGDLLYTGSDSKNIRVWK----NLKEFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLP  205 (347)
Q Consensus       131 ~~~~~l~tg~~dg~I~vwd----~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~  205 (347)
                      ..+..++++..+|.+.+-+    ..+..+.++.|.-+.+-..|+- +.+.+++|+.|+.+..||++..+.-.....    
T Consensus       131 ~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~----  206 (339)
T KOG0280|consen  131 TSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNS----  206 (339)
T ss_pred             ccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecc----
Confidence            3477899999999998443    2244667889999999999976 557999999999999999983321111000    


Q ss_pred             cccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCC-CCEEEEEEecCCCcEEEE
Q 043707          206 TFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRIS-DCKCLESINAHDDAINSV  283 (347)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~vwdl~-~~~~~~~~~~h~~~v~~i  283 (347)
                                                ..|...|.+|.-+| .+.++++|+.|-.|++||.| -++++..-+ -.+.|+.+
T Consensus       207 --------------------------kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi  259 (339)
T KOG0280|consen  207 --------------------------KVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRI  259 (339)
T ss_pred             --------------------------eeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEE
Confidence                                      13888899998877 57899999999999999999 567776554 34789999


Q ss_pred             EeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          284 VAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       284 ~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                      .++|.-  .++.++.-+-.+|-+....... -.........|.+-+..-.|.....+|++|+
T Consensus       260 ~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e-~~~~~~s~~~hdSl~YG~DWd~~~~~lATCs  320 (339)
T KOG0280|consen  260 KHHPEIFHRLLAACMHNGAKILDSSDKVLE-FQIVLPSDKIHDSLCYGGDWDSKDSFLATCS  320 (339)
T ss_pred             EecchhhhHHHHHHHhcCceEEEecccccc-hheeeeccccccceeeccccccccceeeeee
Confidence            999964  5555555566788877643321 1123344456776777777755556777765

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.19  E-value=1.9e-10  Score=115.66  Aligned_cols=211  Identities=17%  Similarity=0.270  Sum_probs=137.1

Q ss_pred             eeeccccEEEEeec--CCEEEEecCCCcEEEEeCCCc--ceeee-cCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 043707          119 IVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE--FSGFK-SNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRK  193 (347)
Q Consensus       119 l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~~~--~~~~~-~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~  193 (347)
                      ++.+-..|.++...  .-+.+||+.||.|++|.....  +..++ .-...|+.+.|+.+|+.+..+..||.+.+|.+..+
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk 2283 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK 2283 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCc
Confidence            34445567777643  458899999999999986533  33332 22378999999999999999999999999998733


Q ss_pred             CCceeeeecccccccceE-------Eec-cCCCeEEEEe-----ecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 043707          194 NPSVHKRVGSLPTFKDYV-------KSS-VNPKNYVEVR-----RNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLK  260 (347)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~-----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~  260 (347)
                      -....+.  ......++.       ... ...+.-+.++     .....+...|.+.++|+++.|...+|++|+.+|.|+
T Consensus      2284 ~~~s~qc--hnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~ 2361 (2439)
T KOG1064|consen 2284 PYTSWQC--HNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVC 2361 (2439)
T ss_pred             ceecccc--CCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEE
Confidence            2111000  000111111       011 1111111111     112223357999999999999999999999999999


Q ss_pred             EEeCCCCEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhh---ccCCc--E--EEEEEc
Q 043707          261 VWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLL---KQENA--I--TALAVN  333 (347)
Q Consensus       261 vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~---~h~~~--V--~~l~~~  333 (347)
                      +||++..+.++.++.         +....+|++|+..|.|+||++...+.      ++.+.   +|++-  +  ..+-. 
T Consensus      2362 l~D~rqrql~h~~~~---------~~~~~~f~~~ss~g~ikIw~~s~~~l------l~~~p~e~ak~gfFr~~g~Q~~v- 2425 (2439)
T KOG1064|consen 2362 LFDIRQRQLRHTFQA---------LDTREYFVTGSSEGNIKIWRLSEFGL------LHTFPSEHAKQGFFRNIGMQINV- 2425 (2439)
T ss_pred             EeehHHHHHHHHhhh---------hhhhheeeccCcccceEEEEccccch------hhcCchhhcccchhhhcCceeee-
Confidence            999999888877765         44456999999999999999974332      21111   12211  1  12222 


Q ss_pred             cCCCEEEEecCCCC
Q 043707          334 QESAVVYCGSSDGL  347 (347)
Q Consensus       334 p~~~~l~sgs~DG~  347 (347)
                      -.+..|.+|+.||+
T Consensus      2426 ~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2426 GQCNRIFSCGADGT 2439 (2439)
T ss_pred             ccCceEEEecCCCC
Confidence            23577889999985

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.19  E-value=4.2e-09  Score=98.10  Aligned_cols=186  Identities=13%  Similarity=0.031  Sum_probs=113.3

Q ss_pred             eeeccccEEEEe--ecCCEEEEec---CCCcEEEEeCCCc-ceeeecCCCCeeEEEEeCCCCEEEEE-eCCC--cEEEEe
Q 043707          119 IVRKEGHIYSLA--ASGDLLYTGS---DSKNIRVWKNLKE-FSGFKSNSGLVKAIIITGDSNKIFTG-HQDG--KIRIWK  189 (347)
Q Consensus       119 l~~h~~~V~~l~--~~~~~l~tg~---~dg~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s~-~~Dg--~I~vwd  189 (347)
                      +..+...+....  ++|+.|+..+   .+..|++|+.... ...+....+.+..++|+|||++|+.. ..+|  .|.+||
T Consensus       194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d  273 (429)
T PRK03629        194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMD  273 (429)
T ss_pred             eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEE
Confidence            333444555554  4677776543   3457888886532 22223333445678999999988754 4455  488889


Q ss_pred             cCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CCc--EEEEeCCC
Q 043707          190 VSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKT--LKVWRISD  266 (347)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~--i~vwdl~~  266 (347)
                      +.+++.....                                 .+...+....|+|+++.|+..+. ++.  |.++|+.+
T Consensus       274 ~~tg~~~~lt---------------------------------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~  320 (429)
T PRK03629        274 LASGQIRQVT---------------------------------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING  320 (429)
T ss_pred             CCCCCEEEcc---------------------------------CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC
Confidence            8776421111                                 13345678899999998876665 344  44456666


Q ss_pred             CEEEEEEecCCCcEEEEEeCCCC-EEEEEe-CC--CcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEe
Q 043707          267 CKCLESINAHDDAINSVVAGFDS-LVFTGS-AD--GTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCG  342 (347)
Q Consensus       267 ~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~-~d--g~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sg  342 (347)
                      ++. ..+..+........|+||| +|+..+ .+  ..|.+||+..+..       ..+... .......|+|||++|+.+
T Consensus       321 g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-------~~Lt~~-~~~~~p~~SpDG~~i~~~  391 (429)
T PRK03629        321 GAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-------QVLTDT-FLDETPSIAPNGTMVIYS  391 (429)
T ss_pred             CCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-------EEeCCC-CCCCCceECCCCCEEEEE
Confidence            543 3444444455678899998 555443 33  3588888864431       111111 123467899999999998


Q ss_pred             cCCC
Q 043707          343 SSDG  346 (347)
Q Consensus       343 s~DG  346 (347)
                      +.||
T Consensus       392 s~~~  395 (429)
T PRK03629        392 SSQG  395 (429)
T ss_pred             EcCC
Confidence            8876

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.18  E-value=1.1e-09  Score=102.32  Aligned_cols=162  Identities=11%  Similarity=0.010  Sum_probs=106.2

Q ss_pred             CcEEEEeCC-CcceeeecCCCCeeEEEEeCCCCEEEEEeCC---CcEEEEecCCCCCceeeeecccccccceEEeccCCC
Q 043707          143 KNIRVWKNL-KEFSGFKSNSGLVKAIIITGDSNKIFTGHQD---GKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPK  218 (347)
Q Consensus       143 g~I~vwd~~-~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D---g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (347)
                      ..|.+||.. ...+.+..+...+...+|+|+|+.|+..+.+   ..|.+||+.+++.....                   
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~-------------------  244 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA-------------------  244 (433)
T ss_pred             EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec-------------------
Confidence            358888854 3455666777889999999999999887743   46999999876532111                   


Q ss_pred             eEEEEeecceeeeeecCCCeeEEEEcCCCCEEE-EEeCCC--cEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEE
Q 043707          219 NYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLY-SGSWDK--TLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTG  294 (347)
Q Consensus       219 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg--~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~  294 (347)
                                    .......+++|+|+++.|+ +.+.+|  .|++||+.+++. ..+..+........|+||+ .|+..
T Consensus       245 --------------~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~  309 (433)
T PRK04922        245 --------------SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFT  309 (433)
T ss_pred             --------------cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEE
Confidence                          1233345789999998765 455555  599999988764 3455555555678999998 55544


Q ss_pred             e-CCCc--EEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707          295 S-ADGT--VKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       295 ~-~dg~--I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                      + .+|.  |.++++..+.       ...+..+......++|+|+|++|+..+.+
T Consensus       310 sd~~g~~~iy~~dl~~g~-------~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~  356 (433)
T PRK04922        310 SDRGGRPQIYRVAASGGS-------AERLTFQGNYNARASVSPDGKKIAMVHGS  356 (433)
T ss_pred             ECCCCCceEEEEECCCCC-------eEEeecCCCCccCEEECCCCCEEEEEECC
Confidence            4 4555  4445554221       11111222344578999999998876543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.17  E-value=2.2e-10  Score=97.02  Aligned_cols=199  Identities=14%  Similarity=0.184  Sum_probs=132.9

Q ss_pred             CCCCCCCcccccccceeEeeee------cc-----ccEEEEeec--C-CEEEEecCCCcEEEEeCCCc--ceeeecCCCC
Q 043707          100 PPYSPNENLLSSCNGLIGSIVR------KE-----GHIYSLAAS--G-DLLYTGSDSKNIRVWKNLKE--FSGFKSNSGL  163 (347)
Q Consensus       100 ~~~~p~~~~~~~~~~~i~~l~~------h~-----~~V~~l~~~--~-~~l~tg~~dg~I~vwd~~~~--~~~~~~h~~~  163 (347)
                      ..|+|+|+.++++...--.++.      |.     ..|.-+.|.  . ..|.....++.|.+|++.+.  ...++.-...
T Consensus        14 c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ag   93 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAG   93 (447)
T ss_pred             eeECCCCCeeeeeeeeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCc
Confidence            4789999999887764222221      11     223334443  2 25667788999999997654  3455566678


Q ss_pred             eeEEEEeCCCCE-EEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEE
Q 043707          164 VKAIIITGDSNK-IFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLS  242 (347)
Q Consensus       164 V~~l~~sp~~~~-l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  242 (347)
                      +..++|+|+|+. |.+...|-.|.||.+.+.+......                                 -...+..++
T Consensus        94 ls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~---------------------------------pK~~~kg~~  140 (447)
T KOG4497|consen   94 LSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH---------------------------------PKTNVKGYA  140 (447)
T ss_pred             ceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc---------------------------------cccCceeEE
Confidence            999999999965 5566678899999998875322211                                 223467899


Q ss_pred             EcCCCCEEEEEeCC-C--cEEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhh
Q 043707          243 LNAEQGLLYSGSWD-K--TLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQV  319 (347)
Q Consensus       243 ~~~~~~~l~s~s~d-g--~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~  319 (347)
                      |+++|++.+..++- .  .+.|........++.++...-..+.|.|+|||        +.+.|||--.+.+        .
T Consensus       141 f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg--------~~laVwd~~Leyk--------v  204 (447)
T KOG4497|consen  141 FHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDG--------NWLAVWDNVLEYK--------V  204 (447)
T ss_pred             ECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCC--------cEEEEecchhhhe--------e
Confidence            99999999888752 1  12233233344566666666678889999997        2345677642221        1


Q ss_pred             hhcc-CCcEEEEEEccCCCEEEEecCCCC
Q 043707          320 LLKQ-ENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       320 ~~~h-~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      +.-| .-.+..++|+|.+++|+.|+.||+
T Consensus       205 ~aYe~~lG~k~v~wsP~~qflavGsyD~~  233 (447)
T KOG4497|consen  205 YAYERGLGLKFVEWSPCNQFLAVGSYDQM  233 (447)
T ss_pred             eeeeeccceeEEEeccccceEEeeccchh
Confidence            1122 357899999999999999999974

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.16  E-value=9e-09  Score=93.40  Aligned_cols=170  Identities=10%  Similarity=0.121  Sum_probs=112.2

Q ss_pred             EEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEe
Q 043707          136 LYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKS  213 (347)
Q Consensus       136 l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~  213 (347)
                      +++-..++.|.|.|..  +.+..+......-..+.++|||+++++++.||.|.++|+.+.+......             
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~-------------   75 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIK-------------   75 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-------------
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEe-------------
Confidence            4566778999999965  4456666544444457899999999999999999999999987544433             


Q ss_pred             ccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEe-CCCcEEEEeCCCCEEEEEEecC-------CCcEEEEEe
Q 043707          214 SVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDCKCLESINAH-------DDAINSVVA  285 (347)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~vwdl~~~~~~~~~~~h-------~~~v~~i~~  285 (347)
                                          .......+++++||++++++. .++.+.|+|.++.+.++.+...       ...+..|..
T Consensus        76 --------------------~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~  135 (369)
T PF02239_consen   76 --------------------VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVA  135 (369)
T ss_dssp             ---------------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE
T ss_pred             --------------------cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEe
Confidence                                334567899999999999876 5899999999999999988643       245677877


Q ss_pred             CCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          286 GFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       286 ~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                      ++..  ++++.-.-+.|.+-|......     +............+..|+|++++++.+.
T Consensus       136 s~~~~~fVv~lkd~~~I~vVdy~d~~~-----~~~~~i~~g~~~~D~~~dpdgry~~va~  190 (369)
T PF02239_consen  136 SPGRPEFVVNLKDTGEIWVVDYSDPKN-----LKVTTIKVGRFPHDGGFDPDGRYFLVAA  190 (369)
T ss_dssp             -SSSSEEEEEETTTTEEEEEETTTSSC-----EEEEEEE--TTEEEEEE-TTSSEEEEEE
T ss_pred             cCCCCEEEEEEccCCeEEEEEeccccc-----cceeeecccccccccccCcccceeeecc
Confidence            7765  444455558887778764322     1112222344677899999999887753

...

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.15  E-value=8.7e-10  Score=92.83  Aligned_cols=221  Identities=18%  Similarity=0.284  Sum_probs=141.6

Q ss_pred             ccccEEEEeec--CCEEEEecCCCcEEEEeCCC-------cceeeecCC------------CCeeEEEEeCCC--CEEEE
Q 043707          122 KEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLK-------EFSGFKSNS------------GLVKAIIITGDS--NKIFT  178 (347)
Q Consensus       122 h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~~-------~~~~~~~h~------------~~V~~l~~sp~~--~~l~s  178 (347)
                      ....|+++.++  |.+|++|...|.|.+|...+       -+..|++|.            ..|..|.|..++  ..++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            34568888886  77999999999999997332       234566664            347888887644  36788


Q ss_pred             EeCCCcEEEEecCCCCCceeeee-----------cccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCC
Q 043707          179 GHQDGKIRIWKVSRKNPSVHKRV-----------GSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ  247 (347)
Q Consensus       179 ~~~Dg~I~vwd~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~  247 (347)
                      .+.|.+|++|.+..+........           +.+.....+..........+......++..-.|...|.+++|+.|.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            88899999999987643211110           0011111121112222222222333334445688999999999998


Q ss_pred             CEEEEEeCCCcEEEEeCCCCE---EEEEEecCC-----CcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccce----
Q 043707          248 GLLYSGSWDKTLKVWRISDCK---CLESINAHD-----DAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTK----  313 (347)
Q Consensus       248 ~~l~s~s~dg~i~vwdl~~~~---~~~~~~~h~-----~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~----  313 (347)
                      ..++++. |-.|.+|.+.-..   .+..++.|.     .-|++..|+|..  .+.-.+..|.|++-|++.......    
T Consensus       185 et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         185 ETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             heeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence            8888775 7889999986432   334445553     357888999975  677778899999999984321100    


Q ss_pred             ------eeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          314 ------HFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       314 ------~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                            ..-...+.+-...|.++.|+++|++|++-.
T Consensus       264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd  299 (460)
T COG5170         264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD  299 (460)
T ss_pred             hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec
Confidence                  000111223345789999999999998743

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.06  E-value=1.4e-08  Score=94.55  Aligned_cols=163  Identities=8%  Similarity=-0.016  Sum_probs=107.6

Q ss_pred             CcEEEEeCC-CcceeeecCCCCeeEEEEeCCCCEEEEEeCC---CcEEEEecCCCCCceeeeecccccccceEEeccCCC
Q 043707          143 KNIRVWKNL-KEFSGFKSNSGLVKAIIITGDSNKIFTGHQD---GKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPK  218 (347)
Q Consensus       143 g~I~vwd~~-~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D---g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (347)
                      ..|.++|.. ...+.+..+...+...+|+|+|++|+.+..+   ..|++||+.+++.....                   
T Consensus       170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~-------------------  230 (417)
T TIGR02800       170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA-------------------  230 (417)
T ss_pred             ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee-------------------
Confidence            357777754 4455566677789999999999999887654   47999999876422111                   


Q ss_pred             eEEEEeecceeeeeecCCCeeEEEEcCCCCEEE-EEeCCC--cEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEE
Q 043707          219 NYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLY-SGSWDK--TLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTG  294 (347)
Q Consensus       219 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg--~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~  294 (347)
                                    .+...+.+++|+|+++.|+ +.+.++  .|++||+.+++. ..+..+........|+|++ .|+..
T Consensus       231 --------------~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~  295 (417)
T TIGR02800       231 --------------SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFT  295 (417)
T ss_pred             --------------cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEE
Confidence                          1344566789999998765 444444  588899987654 3344454445567899987 55544


Q ss_pred             -eCCC--cEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          295 -SADG--TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       295 -~~dg--~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                       ..++  .|.++|+....       ...+..+...+..+.|+|++++|+.++.++
T Consensus       296 s~~~g~~~iy~~d~~~~~-------~~~l~~~~~~~~~~~~spdg~~i~~~~~~~  343 (417)
T TIGR02800       296 SDRGGSPQIYMMDADGGE-------VRRLTFRGGYNASPSWSPDGDLIAFVHREG  343 (417)
T ss_pred             ECCCCCceEEEEECCCCC-------EEEeecCCCCccCeEECCCCCEEEEEEccC
Confidence             3444  46666665321       122333445677889999999998877653

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.05  E-value=2.6e-08  Score=90.43  Aligned_cols=222  Identities=19%  Similarity=0.216  Sum_probs=137.9

Q ss_pred             eeEeeeeccccEEEE--eecCC-EEEEecCCCcEEEEeCCCcceeeecCCC--CeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707          115 LIGSIVRKEGHIYSL--AASGD-LLYTGSDSKNIRVWKNLKEFSGFKSNSG--LVKAIIITGDSNKIFTGHQDGKIRIWK  189 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l--~~~~~-~l~tg~~dg~I~vwd~~~~~~~~~~h~~--~V~~l~~sp~~~~l~s~~~Dg~I~vwd  189 (347)
                      +|..+ .|...-+.+  .++|+ ++++|..--.|++||+.+....|.-|..  .|.-.-.+.|-..++--..|.+|-+--
T Consensus        44 LiQdf-e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHa  122 (703)
T KOG2321|consen   44 LIQDF-EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA  122 (703)
T ss_pred             HHHhc-CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehh
Confidence            34443 344444444  46787 5778888889999998887766766643  344444455656666667777776532


Q ss_pred             cCCCC-----CceeeeecccccccceE-EeccCCCeEEEEeecceeeeee-cCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 043707          190 VSRKN-----PSVHKRVGSLPTFKDYV-KSSVNPKNYVEVRRNRNVLKIR-HYDAVSCLSLNAEQGLLYSGSWDKTLKVW  262 (347)
Q Consensus       190 ~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s~dg~i~vw  262 (347)
                      .-...     +.....+......++++ ........-+.+..+.-...+. ....++++..++-..+|++|+.+|.+-.|
T Consensus       123 k~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfw  202 (703)
T KOG2321|consen  123 KYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFW  202 (703)
T ss_pred             hcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEe
Confidence            21110     00001111111112222 2222222333444333333223 34789999999999999999999999999


Q ss_pred             eCCCCEEEEEEec------CCC-----cEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEE
Q 043707          263 RISDCKCLESINA------HDD-----AINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITAL  330 (347)
Q Consensus       263 dl~~~~~~~~~~~------h~~-----~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l  330 (347)
                      |.++...+.++..      |.+     .|+++.|..+| .+++|..+|.|.|||++....     +...-....-+|..+
T Consensus       203 DpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p-----l~~kdh~~e~pi~~l  277 (703)
T KOG2321|consen  203 DPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP-----LLVKDHGYELPIKKL  277 (703)
T ss_pred             cchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc-----eeecccCCccceeee
Confidence            9998766665542      222     49999999888 899999999999999995432     333333345689999


Q ss_pred             EEccC--CCEEEEe
Q 043707          331 AVNQE--SAVVYCG  342 (347)
Q Consensus       331 ~~~p~--~~~l~sg  342 (347)
                      .|.+.  +..|++.
T Consensus       278 ~~~~~~~q~~v~S~  291 (703)
T KOG2321|consen  278 DWQDTDQQNKVVSM  291 (703)
T ss_pred             cccccCCCceEEec
Confidence            99775  3556554

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.04  E-value=2e-07  Score=84.68  Aligned_cols=224  Identities=13%  Similarity=0.201  Sum_probs=125.1

Q ss_pred             ceeEeeeeccc-cE-EEEeecCCEEEEecCCCcEEEEeCCC--cceeeecCCCCeeEEEEeCCCCEEEEEe-CCCcEEEE
Q 043707          114 GLIGSIVRKEG-HI-YSLAASGDLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIITGDSNKIFTGH-QDGKIRIW  188 (347)
Q Consensus       114 ~~i~~l~~h~~-~V-~~l~~~~~~l~tg~~dg~I~vwd~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~~-~Dg~I~vw  188 (347)
                      +.+..+....+ ++ ..+.++|+++++++.||.|.++|+..  .+..++. .....+++++++|++++++. .++.+.++
T Consensus        27 ~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~  105 (369)
T PF02239_consen   27 KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVI  105 (369)
T ss_dssp             SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEE
T ss_pred             eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEe
Confidence            45666655433 22 33557789999999999999999653  3445443 34578899999999988775 68999999


Q ss_pred             ecCCCCCceeeeecccc---------------cccceEEeccCCCeEEEEeecc----eeeeeecCCCeeEEEEcCCCCE
Q 043707          189 KVSRKNPSVHKRVGSLP---------------TFKDYVKSSVNPKNYVEVRRNR----NVLKIRHYDAVSCLSLNAEQGL  249 (347)
Q Consensus       189 d~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~h~~~V~~l~~~~~~~~  249 (347)
                      |.++.+..........+               ....++....+...++.+....    ....+..........|.|++++
T Consensus       106 D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry  185 (369)
T PF02239_consen  106 DAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRY  185 (369)
T ss_dssp             ETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSE
T ss_pred             ccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccce
Confidence            99988765544333221               1122233333333333332111    1123334455677889999998


Q ss_pred             EEEE-eCCCcEEEEeCCCCEEEEEEe------------------------------------------------------
Q 043707          250 LYSG-SWDKTLKVWRISDCKCLESIN------------------------------------------------------  274 (347)
Q Consensus       250 l~s~-s~dg~i~vwdl~~~~~~~~~~------------------------------------------------------  274 (347)
                      ++.+ ..+..|-++|.++++.+..+.                                                      
T Consensus       186 ~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I  265 (369)
T PF02239_consen  186 FLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTI  265 (369)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEE
T ss_pred             eeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEE
Confidence            7775 446788889988776544321                                                      


Q ss_pred             -cCCCcEEEEEeCCCC-EEEEE----eCCCcEEEEEcccCCccceeeehhhhh-ccCCcEEEEEEccCCCEEEEecCC
Q 043707          275 -AHDDAINSVVAGFDS-LVFTG----SADGTVKVWRRELQGKGTKHFLAQVLL-KQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       275 -~h~~~v~~i~~~~~~-~l~s~----~~dg~I~vwd~~~~~~~~~~~~~~~~~-~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                       ..... .-+..+|++ ++.+.    ...++|.|+|.++.+      ....+. .....+..+.|+++|+.+..+..|
T Consensus       266 ~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~------~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~  336 (369)
T PF02239_consen  266 PTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK------VVKTITPGPGKRVVHMEFNPDGKEVWVSVWD  336 (369)
T ss_dssp             E-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE------EEE-HHHHHT--EEEEEE-TTSSEEEEEEE-
T ss_pred             ECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcc------eeEEEeccCCCcEeccEECCCCCEEEEEEec
Confidence             11111 234457776 66655    456899999998653      222332 223359999999999988776544

...

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.03  E-value=5.8e-08  Score=90.76  Aligned_cols=188  Identities=13%  Similarity=0.039  Sum_probs=110.2

Q ss_pred             eEeeeeccccEEEEe--ecCCEEEEecCC---CcEEEEeCCCc-ceeeecCCCCeeEEEEeCCCCEEE-EEeCCC--cEE
Q 043707          116 IGSIVRKEGHIYSLA--ASGDLLYTGSDS---KNIRVWKNLKE-FSGFKSNSGLVKAIIITGDSNKIF-TGHQDG--KIR  186 (347)
Q Consensus       116 i~~l~~h~~~V~~l~--~~~~~l~tg~~d---g~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~~~l~-s~~~Dg--~I~  186 (347)
                      ...+..+...+....  ++|+.|+..+.+   ..|++|+.... .+.+....+.+...+|+|+|++|+ +...+|  .|.
T Consensus       191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy  270 (430)
T PRK00178        191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY  270 (430)
T ss_pred             ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence            344445566666544  567777655432   36888886532 233333344566789999998876 455555  577


Q ss_pred             EEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CC--cEEEEe
Q 043707          187 IWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DK--TLKVWR  263 (347)
Q Consensus       187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg--~i~vwd  263 (347)
                      +||+.+++...   +.                              .+........|+|+++.|+..+. +|  .|+++|
T Consensus       271 ~~d~~~~~~~~---lt------------------------------~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d  317 (430)
T PRK00178        271 VMDLASRQLSR---VT------------------------------NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVN  317 (430)
T ss_pred             EEECCCCCeEE---cc------------------------------cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEE
Confidence            88887764211   10                              13334456789999987766553 33  577788


Q ss_pred             CCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEe-CCC--cEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEE
Q 043707          264 ISDCKCLESINAHDDAINSVVAGFDS-LVFTGS-ADG--TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVV  339 (347)
Q Consensus       264 l~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~-~dg--~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l  339 (347)
                      +.+++... +...........|+|++ .|+... .++  .|.+||+..+..    ..+..    ........|+|+|+.|
T Consensus       318 ~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~----~~lt~----~~~~~~p~~spdg~~i  388 (430)
T PRK00178        318 VNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV----RILTD----TSLDESPSVAPNGTML  388 (430)
T ss_pred             CCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE----EEccC----CCCCCCceECCCCCEE
Confidence            87776432 22222233456899998 554443 344  577788764321    11111    1122256899999988


Q ss_pred             EEecCC
Q 043707          340 YCGSSD  345 (347)
Q Consensus       340 ~sgs~D  345 (347)
                      +..+.+
T Consensus       389 ~~~~~~  394 (430)
T PRK00178        389 IYATRQ  394 (430)
T ss_pred             EEEEec
Confidence            876654

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.03  E-value=8.9e-10  Score=93.98  Aligned_cols=167  Identities=17%  Similarity=0.237  Sum_probs=120.7

Q ss_pred             CCEEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEE
Q 043707          133 GDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVK  212 (347)
Q Consensus       133 ~~~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~  212 (347)
                      +-. ++.+.+-.|-+-+..+.....-...+.|.+++|...++.++.|+..|.|.+.|++.+......             
T Consensus       225 gyh-fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~-------------  290 (425)
T KOG2695|consen  225 GYH-FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGW-------------  290 (425)
T ss_pred             eee-ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCc-------------
Confidence            334 444556678888877665554446788999999998889999999999999999987432111             


Q ss_pred             eccCCCeEEEEeecceeeeeecCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCEE---EEEEecCCCcEEEEEe--C
Q 043707          213 SSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKC---LESINAHDDAINSVVA--G  286 (347)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~vwdl~~~~~---~~~~~~h~~~v~~i~~--~  286 (347)
                                     ....+-|...|+++..-. ++.+|++.+.+|+|++||++.-++   +.++.+|...-.-+-+  .
T Consensus       291 ---------------~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~  355 (425)
T KOG2695|consen  291 ---------------CAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVK  355 (425)
T ss_pred             ---------------ceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccc
Confidence                           111223999999998766 788999999999999999998888   8888888654333333  2


Q ss_pred             C-CCEEEEEeCCCcEEEEEcccCCccceeeehhhh----hccCCcEEEEEEcc
Q 043707          287 F-DSLVFTGSADGTVKVWRRELQGKGTKHFLAQVL----LKQENAITALAVNQ  334 (347)
Q Consensus       287 ~-~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~----~~h~~~V~~l~~~p  334 (347)
                      + +|.+++++.|...+||.++.+.      +..++    ...+..+..++|..
T Consensus       356 ~eeg~I~s~GdDcytRiWsl~~gh------Ll~tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  356 EEEGSIFSVGDDCYTRIWSLDSGH------LLCTIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             cccceEEEccCeeEEEEEecccCc------eeeccCCCCccccccccceehhc
Confidence            3 3589999999999999998543      22222    22344566777754

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.98  E-value=5.2e-08  Score=91.22  Aligned_cols=161  Identities=9%  Similarity=-0.028  Sum_probs=99.3

Q ss_pred             cEEEEeCC-CcceeeecCCCCeeEEEEeCCCCEEEEEeCC-C--cEEEEecCCCCCceeeeecccccccceEEeccCCCe
Q 043707          144 NIRVWKNL-KEFSGFKSNSGLVKAIIITGDSNKIFTGHQD-G--KIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKN  219 (347)
Q Consensus       144 ~I~vwd~~-~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D-g--~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (347)
                      .|.++|.. ...+.+..+...+....|+|||++|+..+.+ +  .|.+||+.+++......                   
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~-------------------  259 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS-------------------  259 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC-------------------
Confidence            56666743 3345555667788999999999988876543 3  58888887764311110                   


Q ss_pred             EEEEeecceeeeeecCCCeeEEEEcCCCCEEEE-EeCCCc--EEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EE-EEE
Q 043707          220 YVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYS-GSWDKT--LKVWRISDCKCLESINAHDDAINSVVAGFDS-LV-FTG  294 (347)
Q Consensus       220 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~dg~--i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l-~s~  294 (347)
                                    ........+|+||++.|+. .+.++.  |+++|+.+++. ..+..+........|+||+ .| ++.
T Consensus       260 --------------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s  324 (448)
T PRK04792        260 --------------FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTS  324 (448)
T ss_pred             --------------CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEE
Confidence                          1122346799999997764 566665  77888877654 3444455556778999998 44 444


Q ss_pred             eCCCcEEEE--EcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707          295 SADGTVKVW--RRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       295 ~~dg~I~vw--d~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                      ..++...+|  |+..+..       ..+..........+|+|||++|+..+.+
T Consensus       325 ~~~g~~~Iy~~dl~~g~~-------~~Lt~~g~~~~~~~~SpDG~~l~~~~~~  370 (448)
T PRK04792        325 ERGGKPQIYRVNLASGKV-------SRLTFEGEQNLGGSITPDGRSMIMVNRT  370 (448)
T ss_pred             CCCCCceEEEEECCCCCE-------EEEecCCCCCcCeeECCCCCEEEEEEec
Confidence            445554554  5542211       1111122223457899999998876543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.97  E-value=6.6e-08  Score=90.39  Aligned_cols=160  Identities=9%  Similarity=-0.009  Sum_probs=101.0

Q ss_pred             cEEEEeCC-CcceeeecCCCCeeEEEEeCCCCEEEEEeCC---CcEEEEecCCCCCceeeeecccccccceEEeccCCCe
Q 043707          144 NIRVWKNL-KEFSGFKSNSGLVKAIIITGDSNKIFTGHQD---GKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKN  219 (347)
Q Consensus       144 ~I~vwd~~-~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D---g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (347)
                      .|.++|.. ...+.+..+...+...+|+|+|++|+..+.+   ..|.+||+.+++.....                    
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~--------------------  239 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT--------------------  239 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc--------------------
Confidence            36666754 3345566677789999999999998776644   35888999876532111                    


Q ss_pred             EEEEeecceeeeeecCCCeeEEEEcCCCCEEE-EEeCCC--cEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EE-EEE
Q 043707          220 YVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLY-SGSWDK--TLKVWRISDCKCLESINAHDDAINSVVAGFDS-LV-FTG  294 (347)
Q Consensus       220 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg--~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l-~s~  294 (347)
                                   ...+.+...+|+|+|+.|+ +.+.+|  .|++||+.+++.. .+..+........|+||+ .| ++.
T Consensus       240 -------------~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s  305 (430)
T PRK00178        240 -------------NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTS  305 (430)
T ss_pred             -------------CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEE
Confidence                         1223344689999998776 444455  5888899877643 454455556677899997 44 444


Q ss_pred             eCCC--cEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707          295 SADG--TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       295 ~~dg--~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      ..++  .|.++++..+..  . .+  ..  .........|+|+|+.|+..+.
T Consensus       306 ~~~g~~~iy~~d~~~g~~--~-~l--t~--~~~~~~~~~~Spdg~~i~~~~~  350 (430)
T PRK00178        306 DRGGKPQIYKVNVNGGRA--E-RV--TF--VGNYNARPRLSADGKTLVMVHR  350 (430)
T ss_pred             CCCCCceEEEEECCCCCE--E-Ee--ec--CCCCccceEECCCCCEEEEEEc
Confidence            4444  466666643221  1 11  11  1123345789999999887654

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.97  E-value=3.7e-08  Score=89.68  Aligned_cols=142  Identities=15%  Similarity=0.208  Sum_probs=114.7

Q ss_pred             CEEEEecCCCcEEEEeCCCc-c-eee--ecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccc
Q 043707          134 DLLYTGSDSKNIRVWKNLKE-F-SGF--KSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKD  209 (347)
Q Consensus       134 ~~l~tg~~dg~I~vwd~~~~-~-~~~--~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~  209 (347)
                      ..++-|...|.|.+|+.... + ..+  ..|.+.|.++.++.+-..|.+++.|+.+..|+....+......         
T Consensus        71 ~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~---------  141 (541)
T KOG4547|consen   71 SMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK---------  141 (541)
T ss_pred             eEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec---------
Confidence            37888999999999985533 2 222  4688999999999988899999999999999998775322221         


Q ss_pred             eEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCC-
Q 043707          210 YVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-  288 (347)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~-  288 (347)
                                             .....+..++.+||+..|++++  ++|++||+++.+.+..|.+|.++|+++.|... 
T Consensus       142 -----------------------~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~  196 (541)
T KOG4547|consen  142 -----------------------EQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLI  196 (541)
T ss_pred             -----------------------cCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEec
Confidence                                   3556788999999999999987  68999999999999999999999999998654 


Q ss_pred             ----C--EEEEEeCCCcEEEEEcccCC
Q 043707          289 ----S--LVFTGSADGTVKVWRRELQG  309 (347)
Q Consensus       289 ----~--~l~s~~~dg~I~vwd~~~~~  309 (347)
                          |  +|.+...+.-|.+|-++...
T Consensus       197 ~g~~G~~vLssa~~~r~i~~w~v~~~~  223 (541)
T KOG4547|consen  197 DGIIGKYVLSSAAAERGITVWVVEKED  223 (541)
T ss_pred             cccccceeeeccccccceeEEEEEccc
Confidence                3  44455678889999887543

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.94  E-value=6.8e-09  Score=85.44  Aligned_cols=194  Identities=19%  Similarity=0.258  Sum_probs=116.0

Q ss_pred             eeeeccc-cEEEEeec-CCEEEEecCCCcEEEEeCC--------------CcceeeecCCCCeeEEEEeCCCCEEEEEeC
Q 043707          118 SIVRKEG-HIYSLAAS-GDLLYTGSDSKNIRVWKNL--------------KEFSGFKSNSGLVKAIIITGDSNKIFTGHQ  181 (347)
Q Consensus       118 ~l~~h~~-~V~~l~~~-~~~l~tg~~dg~I~vwd~~--------------~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~  181 (347)
                      .+.+|.+ .|..+.+. ...|+++..++.+..+...              ..++.+..|+++-.+-+.+--++.++++..
T Consensus        30 ~i~~~~d~~~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~  109 (319)
T KOG4714|consen   30 EIMQHADVKLSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYA  109 (319)
T ss_pred             hcccccceEEEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCC
Confidence            3334443 24444443 3356676666665555321              223444445444333334444568999999


Q ss_pred             CCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEe-----CC
Q 043707          182 DGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGS-----WD  256 (347)
Q Consensus       182 Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-----~d  256 (347)
                      ||.+.+.+.+.... ...++..                             .|.+.. ..+....++.+.++.     .-
T Consensus       110 dg~~~v~s~~~~~~-~~~~i~~-----------------------------~~~~~a-s~~~~~~~~~i~s~~~g~~n~~  158 (319)
T KOG4714|consen  110 DGSLAVFSTDKDLA-LMSRIPS-----------------------------IHSGSA-SRKICRHGNSILSGGCGNWNAQ  158 (319)
T ss_pred             CceEEEEechHHHh-hhhhccc-----------------------------cccccc-ccceeecccEEecCCcceEeec
Confidence            99999999876221 1111110                             011111 111112233333322     12


Q ss_pred             CcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEcc
Q 043707          257 KTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQ  334 (347)
Q Consensus       257 g~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p  334 (347)
                      +..++|+++..+.+..-+.-...|.+++-+|..  ++++|+.||.+.+||.+....     +...+..|+.+++.+.|+|
T Consensus       159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~-----p~S~l~ahk~~i~eV~FHp  233 (319)
T KOG4714|consen  159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM-----PVSLLKAHKAEIWEVHFHP  233 (319)
T ss_pred             cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccc-----hHHHHHHhhhhhhheeccC
Confidence            346777776554333222223448888888864  888999999999999986543     7788999999999999999


Q ss_pred             C-CCEEEEecCCCC
Q 043707          335 E-SAVVYCGSSDGL  347 (347)
Q Consensus       335 ~-~~~l~sgs~DG~  347 (347)
                      . +..|.++++||.
T Consensus       234 k~p~~Lft~sedGs  247 (319)
T KOG4714|consen  234 KNPEHLFTCSEDGS  247 (319)
T ss_pred             CCchheeEecCCCc
Confidence            5 589999999983

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.94  E-value=1.6e-07  Score=88.00  Aligned_cols=176  Identities=15%  Similarity=0.075  Sum_probs=99.3

Q ss_pred             EEeecCCEEEEecC-CC--cEEEEeCCCc-ceeeecCCCCeeEEEEeCCCCEEEE-EeCCCc--EEEEecCCCCCceeee
Q 043707          128 SLAASGDLLYTGSD-SK--NIRVWKNLKE-FSGFKSNSGLVKAIIITGDSNKIFT-GHQDGK--IRIWKVSRKNPSVHKR  200 (347)
Q Consensus       128 ~l~~~~~~l~tg~~-dg--~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s-~~~Dg~--I~vwd~~~~~~~~~~~  200 (347)
                      .++++|+.|+..+. ++  .|++||.... ...+....+.....+|+|+|+.|+. ...+|.  |.+||+.+++..... 
T Consensus       224 ~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt-  302 (448)
T PRK04792        224 AWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRIT-  302 (448)
T ss_pred             eECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECc-
Confidence            34456777665533 33  5778886432 2223322344557899999997764 566675  667777665421110 


Q ss_pred             ecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCEEEEEEecCC
Q 043707          201 VGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DK--TLKVWRISDCKCLESINAHD  277 (347)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg--~i~vwdl~~~~~~~~~~~h~  277 (347)
                                                      .+.......+|+||++.|+..+. ++  .|.++|+.+++... +....
T Consensus       303 --------------------------------~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g  349 (448)
T PRK04792        303 --------------------------------RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEG  349 (448)
T ss_pred             --------------------------------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCC
Confidence                                            13344566899999988766553 34  46667887766433 22222


Q ss_pred             CcEEEEEeCCCC-EEE-EEeCCCcEEE--EEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707          278 DAINSVVAGFDS-LVF-TGSADGTVKV--WRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       278 ~~v~~i~~~~~~-~l~-s~~~dg~I~v--wd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                      .......|+||+ +|+ +...++...|  +|+..+..    ..   +... .......|+|+|+.|+..+.+
T Consensus       350 ~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~----~~---lt~~-~~d~~ps~spdG~~I~~~~~~  413 (448)
T PRK04792        350 EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM----QV---LTST-RLDESPSVAPNGTMVIYSTTY  413 (448)
T ss_pred             CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe----EE---ccCC-CCCCCceECCCCCEEEEEEec
Confidence            233456899998 444 4444554555  55543221    11   1111 112245799999888776544

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.94  E-value=1.7e-06  Score=78.36  Aligned_cols=216  Identities=12%  Similarity=0.189  Sum_probs=128.1

Q ss_pred             EEeecCCEEEEecC----CCcEEEEeCCCc------ceeeecCCCCeeEEEEeCCCCEEEEEe-CCCcEEEEecCCC-CC
Q 043707          128 SLAASGDLLYTGSD----SKNIRVWKNLKE------FSGFKSNSGLVKAIIITGDSNKIFTGH-QDGKIRIWKVSRK-NP  195 (347)
Q Consensus       128 ~l~~~~~~l~tg~~----dg~I~vwd~~~~------~~~~~~h~~~V~~l~~sp~~~~l~s~~-~Dg~I~vwd~~~~-~~  195 (347)
                      ++++++++|++..+    +|.|..|++...      +............++++|++++|+++. .+|.|.++++... ..
T Consensus        43 ~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l  122 (345)
T PF10282_consen   43 AVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSL  122 (345)
T ss_dssp             EE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEE
T ss_pred             EEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCccc
Confidence            45567888888766    578888874432      222222344566799999999988887 5899999999874 22


Q ss_pred             ceeee---------------------ecccccccceEEeccCCCeEEEEee--cc------eeeeeecCCCeeEEEEcCC
Q 043707          196 SVHKR---------------------VGSLPTFKDYVKSSVNPKNYVEVRR--NR------NVLKIRHYDAVSCLSLNAE  246 (347)
Q Consensus       196 ~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~h~~~V~~l~~~~~  246 (347)
                      .....                     +...|....++......+.+.....  ..      ...........+.+.|+|+
T Consensus       123 ~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pd  202 (345)
T PF10282_consen  123 GEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPD  202 (345)
T ss_dssp             EEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TT
T ss_pred             ceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCC
Confidence            11110                     1111222223333333333222222  11      1112334556788999999


Q ss_pred             CCEEEEEeC-CCcEEEEeCC--CCE--EEEEEecC------CCcEEEEEeCCCC-EEE-EEeCCCcEEEEEcccCCccce
Q 043707          247 QGLLYSGSW-DKTLKVWRIS--DCK--CLESINAH------DDAINSVVAGFDS-LVF-TGSADGTVKVWRRELQGKGTK  313 (347)
Q Consensus       247 ~~~l~s~s~-dg~i~vwdl~--~~~--~~~~~~~h------~~~v~~i~~~~~~-~l~-s~~~dg~I~vwd~~~~~~~~~  313 (347)
                      ++++++..+ +++|.++++.  +++  .+..+...      ......|.++||+ +|+ +...++.|.+|++.....  .
T Consensus       203 g~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g--~  280 (345)
T PF10282_consen  203 GKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG--T  280 (345)
T ss_dssp             SSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT--T
T ss_pred             cCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC--c
Confidence            998877665 7889999988  443  33333321      1257889999998 444 455688999999953221  1


Q ss_pred             eeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707          314 HFLAQVLLKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       314 ~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                      ................++++|+|++|+++..+
T Consensus       281 l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~  312 (345)
T PF10282_consen  281 LTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD  312 (345)
T ss_dssp             EEEEEEEEESSSSEEEEEE-TTSSEEEEEETT
T ss_pred             eEEEEEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence            12233333334558999999999999988754

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.93  E-value=7e-09  Score=92.24  Aligned_cols=202  Identities=16%  Similarity=0.225  Sum_probs=139.9

Q ss_pred             eEeeeeccccEEEEee---cCCEEEEecCCCcEEEEeCCCc-----ceeeecCCC---CeeEEEEeC-CCCEEEEEeCCC
Q 043707          116 IGSIVRKEGHIYSLAA---SGDLLYTGSDSKNIRVWKNLKE-----FSGFKSNSG---LVKAIIITG-DSNKIFTGHQDG  183 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~---~~~~l~tg~~dg~I~vwd~~~~-----~~~~~~h~~---~V~~l~~sp-~~~~l~s~~~Dg  183 (347)
                      .+.+-.|.++|..++.   +..-|++++.|+.+.-.|+...     +.....+..   ....|+..| +..++++|+.|.
T Consensus       225 t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dq  304 (559)
T KOG1334|consen  225 TKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQ  304 (559)
T ss_pred             ceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhh
Confidence            4456678998877764   4678999999999998885422     222233333   567889999 555899999999


Q ss_pred             cEEEEecCCCCCceeeee--cccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 043707          184 KIRIWKVSRKNPSVHKRV--GSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKV  261 (347)
Q Consensus       184 ~I~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~v  261 (347)
                      .+++||.+.-.......+  ...|.                      .+.....-.|+|++++.++.-|+++-.|-.|++
T Consensus       305 f~RvYD~R~~~~e~~n~~~~~f~p~----------------------hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYL  362 (559)
T KOG1334|consen  305 FARVYDQRRIDKEENNGVLDKFCPH----------------------HLVEDDPVNITGLVYSHDGSELLASYNDEDIYL  362 (559)
T ss_pred             hhhhhcccchhhccccchhhhcCCc----------------------cccccCcccceeEEecCCccceeeeecccceEE
Confidence            999999876543211110  00000                      000013456999999988777777777888999


Q ss_pred             EeCC--CC----------EEEEE-EecCCC--cEEEEE-eCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccC
Q 043707          262 WRIS--DC----------KCLES-INAHDD--AINSVV-AGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQE  324 (347)
Q Consensus       262 wdl~--~~----------~~~~~-~~~h~~--~v~~i~-~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~  324 (347)
                      +.-.  .|          ..+.. +++|..  .|..+- |.|.. ++++|+.-|.|.||+..+.+      +++.+.+-.
T Consensus       363 F~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e------ii~~MegDr  436 (559)
T KOG1334|consen  363 FNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE------IIRFMEGDR  436 (559)
T ss_pred             eccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhH------HHHHhhccc
Confidence            9532  22          22333 678854  466664 46654 99999999999999987543      677777766


Q ss_pred             CcEEEEEEccCCCEEEEecCC
Q 043707          325 NAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       325 ~~V~~l~~~p~~~~l~sgs~D  345 (347)
                      .-|+||.-+|--..||++|-|
T Consensus       437 ~VVNCLEpHP~~PvLAsSGid  457 (559)
T KOG1334|consen  437 HVVNCLEPHPHLPVLASSGID  457 (559)
T ss_pred             ceEeccCCCCCCchhhccCCc
Confidence            699999999999999998876

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.92  E-value=3.5e-08  Score=96.70  Aligned_cols=165  Identities=13%  Similarity=0.216  Sum_probs=114.4

Q ss_pred             CcceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceee
Q 043707          152 KEFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVL  230 (347)
Q Consensus       152 ~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (347)
                      ..+..+..|...|..++.++ ++.+|+||+.||+|++||.+.-.......                         .....
T Consensus      1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~-------------------------rS~lt 1093 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSA-------------------------RSELT 1093 (1431)
T ss_pred             eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCccee-------------------------eeeEE
Confidence            34566778999999999887 45899999999999999987543210000                         00111


Q ss_pred             eeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC--E-----EEEEEecC-CCcEEEE-EeCCC--C-EEEEEeCCC
Q 043707          231 KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC--K-----CLESINAH-DDAINSV-VAGFD--S-LVFTGSADG  298 (347)
Q Consensus       231 ~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~--~-----~~~~~~~h-~~~v~~i-~~~~~--~-~l~s~~~dg  298 (347)
                      +..-...+.++.+.+.+..++.++.||.|.+.++...  +     +......+ .+.+.++ ++...  . .|+.+..-+
T Consensus      1094 ys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~ 1173 (1431)
T KOG1240|consen 1094 YSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLS 1173 (1431)
T ss_pred             EeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEecc
Confidence            1124677899999999999999999999999998752  1     12222222 2334444 33322  3 778888899


Q ss_pred             cEEEEEcccCCccceeeehhhh--hccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          299 TVKVWRRELQGKGTKHFLAQVL--LKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       299 ~I~vwd~~~~~~~~~~~~~~~~--~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      .|..||++....      ...+  ....+.|++++.+|.+.+++.|..-|.
T Consensus      1174 ~iv~~D~r~~~~------~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~ 1218 (1431)
T KOG1240|consen 1174 RIVSWDTRMRHD------AWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQ 1218 (1431)
T ss_pred             ceEEecchhhhh------HHhhhcCccccceeEEEecCCceEEEEecCCce
Confidence            999999985432      2222  223568999999999999999998773

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.90  E-value=1.5e-07  Score=77.97  Aligned_cols=181  Identities=10%  Similarity=0.004  Sum_probs=129.8

Q ss_pred             EEEEecCCCcEEEEeCCCcceeeecCCCC--eeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceee-eecccccccceE
Q 043707          135 LLYTGSDSKNIRVWKNLKEFSGFKSNSGL--VKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHK-RVGSLPTFKDYV  211 (347)
Q Consensus       135 ~l~tg~~dg~I~vwd~~~~~~~~~~h~~~--V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~-~~~~~~~~~~~~  211 (347)
                      -+..++.|.++++.++......+..|...  +..++++++++++++.+....|..|.++........ ...         
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a---------  200 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEA---------  200 (344)
T ss_pred             ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEec---------
Confidence            56678888999998876555555556544  889999999999999999999999998765432221 111         


Q ss_pred             EeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEE-----EEecCCCcEEEEEeC
Q 043707          212 KSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE-----SINAHDDAINSVVAG  286 (347)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~-----~~~~h~~~v~~i~~~  286 (347)
                                           ...+.=-+.+|+.....+|++..||++.|||+|......     +-..|.+++..+.|+
T Consensus       201 ---------------------~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fs  259 (344)
T KOG4532|consen  201 ---------------------PTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFS  259 (344)
T ss_pred             ---------------------ccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEec
Confidence                                 133445678899999999999999999999998764332     223588999999999


Q ss_pred             CCC---EEEEEeCCCcEEEEEcccCCccceee-ehhhhhccCCc-EEEEEEccCCCEEEEecCC
Q 043707          287 FDS---LVFTGSADGTVKVWRRELQGKGTKHF-LAQVLLKQENA-ITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       287 ~~~---~l~s~~~dg~I~vwd~~~~~~~~~~~-~~~~~~~h~~~-V~~l~~~p~~~~l~sgs~D  345 (347)
                      +.|   +|+..-.-+.+.|.|++......... +......|... |..-.|+.++..+.+..++
T Consensus       260 l~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~  323 (344)
T KOG4532|consen  260 LYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL  323 (344)
T ss_pred             CCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch
Confidence            866   77777778899999999765411111 11233445444 8888888887766665543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.90  E-value=2.7e-07  Score=85.85  Aligned_cols=171  Identities=9%  Similarity=-0.041  Sum_probs=96.3

Q ss_pred             EecCCCc--EEEEeCCC-cceeeecCCCCeeEEEEeCCCCEEEEEeC-CC----cEEEEecCCCCCceeeeecccccccc
Q 043707          138 TGSDSKN--IRVWKNLK-EFSGFKSNSGLVKAIIITGDSNKIFTGHQ-DG----KIRIWKVSRKNPSVHKRVGSLPTFKD  209 (347)
Q Consensus       138 tg~~dg~--I~vwd~~~-~~~~~~~h~~~V~~l~~sp~~~~l~s~~~-Dg----~I~vwd~~~~~~~~~~~~~~~~~~~~  209 (347)
                      +...+|.  |++.+... ....+....+.....+|+|||++|+..+. +|    .+.+|++..+.......+        
T Consensus       204 ~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~l--------  275 (428)
T PRK01029        204 VSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRL--------  275 (428)
T ss_pred             EEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEe--------
Confidence            4444444  55556432 22333334455667899999988876553 22    344466654311000000        


Q ss_pred             eEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEe-CCCcEEEE--eCCC-CEEEEEEecCCCcEEEEEe
Q 043707          210 YVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVW--RISD-CKCLESINAHDDAINSVVA  285 (347)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~vw--dl~~-~~~~~~~~~h~~~v~~i~~  285 (347)
                                           ...........+|+|||+.|+..+ .+|...||  ++.. +.....+..+...+....|
T Consensus       276 ---------------------t~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~w  334 (428)
T PRK01029        276 ---------------------LNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAW  334 (428)
T ss_pred             ---------------------ecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeE
Confidence                                 001222345679999999777655 46755555  4432 2334445545556778899


Q ss_pred             CCCC-EEEEEe-CC--CcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707          286 GFDS-LVFTGS-AD--GTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       286 ~~~~-~l~s~~-~d--g~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      +||| .|+..+ .+  ..|.+||+..+..       ..+......+....|+|||+.|+..+.
T Consensus       335 SPDG~~Laf~~~~~g~~~I~v~dl~~g~~-------~~Lt~~~~~~~~p~wSpDG~~L~f~~~  390 (428)
T PRK01029        335 SPDGKKIAFCSVIKGVRQICVYDLATGRD-------YQLTTSPENKESPSWAIDSLHLVYSAG  390 (428)
T ss_pred             CCCCCEEEEEEcCCCCcEEEEEECCCCCe-------EEccCCCCCccceEECCCCCEEEEEEC
Confidence            9998 555443 33  4689999875432       122222335678999999998875443

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.89  E-value=2.5e-08  Score=86.85  Aligned_cols=79  Identities=16%  Similarity=0.342  Sum_probs=71.0

Q ss_pred             eecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEe-cCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCc
Q 043707          232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN-AHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGK  310 (347)
Q Consensus       232 ~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~-~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~  310 (347)
                      .+|-..++.++|+||+++++++..|..|+|-.....-.+..|. +|...|..++.-++..|++|+.|++|++||++.+..
T Consensus       148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~  227 (390)
T KOG3914|consen  148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKL  227 (390)
T ss_pred             hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCCc
Confidence            3699999999999999999999999999999888777777775 699999999999888999999999999999986543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.87  E-value=3.1e-07  Score=78.67  Aligned_cols=183  Identities=16%  Similarity=0.262  Sum_probs=125.3

Q ss_pred             cEEEEeec--CCEEEEecCCCcEEEEeCC------CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCc
Q 043707          125 HIYSLAAS--GDLLYTGSDSKNIRVWKNL------KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPS  196 (347)
Q Consensus       125 ~V~~l~~~--~~~l~tg~~dg~I~vwd~~------~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~  196 (347)
                      ++.++.+.  ...|+.|-..|++.-+...      ...+....|...|..+.|+....++++.+.|..+.---.+.+...
T Consensus        70 ~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~l  149 (404)
T KOG1409|consen   70 PCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRL  149 (404)
T ss_pred             CceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcc
Confidence            45566654  4589999999999888532      335667789999999999998889999999987764444444433


Q ss_pred             eeeeecccccccce----EEeccCCC--eEEEEeecc---eeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 043707          197 VHKRVGSLPTFKDY----VKSSVNPK--NYVEVRRNR---NVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC  267 (347)
Q Consensus       197 ~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~---~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~  267 (347)
                      -.......+....+    ...+....  ....+....   ...+.+|.+.+.+++|.+...+|++|..|..+.+||+.-.
T Consensus       150 g~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~  229 (404)
T KOG1409|consen  150 GGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR  229 (404)
T ss_pred             cceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC
Confidence            32222222221111    11111111  111221111   2234579999999999999999999999999999999654


Q ss_pred             E-EEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEccc
Q 043707          268 K-CLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRREL  307 (347)
Q Consensus       268 ~-~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~  307 (347)
                      + ....+.+|...|..+...+-- .+++++.||.|.+|+...
T Consensus       230 ~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  230 KGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             cceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            4 345667888888888765543 889999999999999873

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.82  E-value=6.7e-07  Score=83.20  Aligned_cols=170  Identities=11%  Similarity=0.107  Sum_probs=96.9

Q ss_pred             EEeecCCEEEEec-CCC--cE--EEEeCCC----cceeee-cCCCCeeEEEEeCCCCEEEEEe-CCCcEEEEecCC--CC
Q 043707          128 SLAASGDLLYTGS-DSK--NI--RVWKNLK----EFSGFK-SNSGLVKAIIITGDSNKIFTGH-QDGKIRIWKVSR--KN  194 (347)
Q Consensus       128 ~l~~~~~~l~tg~-~dg--~I--~vwd~~~----~~~~~~-~h~~~V~~l~~sp~~~~l~s~~-~Dg~I~vwd~~~--~~  194 (347)
                      .++++|+.|+..+ .+|  .+  .+|+...    ....+. .+.+.....+|+|||+.|+..+ .+|...+|.+..  ..
T Consensus       237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g  316 (428)
T PRK01029        237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG  316 (428)
T ss_pred             EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc
Confidence            3556787666543 233  33  3355332    222222 2223456789999999877665 567666665432  11


Q ss_pred             CceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCC---CcEEEEeCCCCEEEE
Q 043707          195 PSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWD---KTLKVWRISDCKCLE  271 (347)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d---g~i~vwdl~~~~~~~  271 (347)
                      .. ...+                              ..+...+....|+|||+.|+..+.+   ..|.+||+.+++...
T Consensus       317 ~~-~~~l------------------------------t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~  365 (428)
T PRK01029        317 QS-PRLL------------------------------TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ  365 (428)
T ss_pred             cc-eEEe------------------------------ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE
Confidence            00 0100                              0133456778999999988876543   369999998886543


Q ss_pred             EEecCCCcEEEEEeCCCC-EEE-EEeC--CCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCC
Q 043707          272 SINAHDDAINSVVAGFDS-LVF-TGSA--DGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQES  336 (347)
Q Consensus       272 ~~~~h~~~v~~i~~~~~~-~l~-s~~~--dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~  336 (347)
                       +......+....|+||+ .|+ ++..  ...|.+||+..+..       ..+....+.+...+|+|-.
T Consensus       366 -Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~-------~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        366 -LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT-------RKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             -ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-------EEeecCCCcccCceecCCC
Confidence             33233456778999998 443 4433  35677778763321       1222234456677887743

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=4.2e-08  Score=86.68  Aligned_cols=224  Identities=14%  Similarity=0.170  Sum_probs=160.0

Q ss_pred             eccccEEEEeec-CCEEEEecCCCcEEEEeCCC-----cceeeecCCCCeeEEEEeCCCCEEEEEeC-CCcEEEEecCCC
Q 043707          121 RKEGHIYSLAAS-GDLLYTGSDSKNIRVWKNLK-----EFSGFKSNSGLVKAIIITGDSNKIFTGHQ-DGKIRIWKVSRK  193 (347)
Q Consensus       121 ~h~~~V~~l~~~-~~~l~tg~~dg~I~vwd~~~-----~~~~~~~h~~~V~~l~~sp~~~~l~s~~~-Dg~I~vwd~~~~  193 (347)
                      .|.+.|+-+.+. .+++.+++.||.++.|....     -+..+..|-+.|.+++.+-++..+.|.+. |..++++|+++-
T Consensus         7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            377777766654 78999999999999997432     35567788899999999999999999777 999999999988


Q ss_pred             CCceeeeecccccccceEEeccCCCeEEEEeecc----------------eeeeeecCCCeeEEEEcCCCCEEEEEeCCC
Q 043707          194 NPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNR----------------NVLKIRHYDAVSCLSLNAEQGLLYSGSWDK  257 (347)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg  257 (347)
                      ..........+|...+++.+..+....+.+....                .....-|..+|.++.+++.+..+++....|
T Consensus        87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g  166 (558)
T KOG0882|consen   87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG  166 (558)
T ss_pred             chhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc
Confidence            7776677777777776666555443333222111                111224889999999999999999999999


Q ss_pred             cEEEEeCCC------CEE---------EEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCcc----------
Q 043707          258 TLKVWRISD------CKC---------LESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG----------  311 (347)
Q Consensus       258 ~i~vwdl~~------~~~---------~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~----------  311 (347)
                      -|.-|....      .+.         +..+........++.|+|++ .+.+-+.|..|++++..++...          
T Consensus       167 mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~  246 (558)
T KOG0882|consen  167 MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDA  246 (558)
T ss_pred             eeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhh
Confidence            999998762      111         11222335567899999998 8888889999999999764320          


Q ss_pred             ----------------ceeeehhhhhccCC-cEEEEEEccCCCEEEEecC
Q 043707          312 ----------------TKHFLAQVLLKQEN-AITALAVNQESAVVYCGSS  344 (347)
Q Consensus       312 ----------------~~~~~~~~~~~h~~-~V~~l~~~p~~~~l~sgs~  344 (347)
                                      ......+.+..|.. .-+.+.|...+++|+-|+-
T Consensus       247 ~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~  296 (558)
T KOG0882|consen  247 QYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTI  296 (558)
T ss_pred             hhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecc
Confidence                            00011123344543 3467888888888887653

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.80  E-value=1.3e-07  Score=80.85  Aligned_cols=224  Identities=15%  Similarity=0.263  Sum_probs=137.6

Q ss_pred             eeEeeeeccccEEEEe--ecCCEEEEecCCCcEEEEeCC---Ccce-eeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707          115 LIGSIVRKEGHIYSLA--ASGDLLYTGSDSKNIRVWKNL---KEFS-GFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW  188 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~--~~~~~l~tg~~dg~I~vwd~~---~~~~-~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw  188 (347)
                      ++..+.+|.+.|++..  +-..-+++.+.|.++|||-..   +... .......++.++.+.++...|+.|-..|++.-+
T Consensus        16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef   95 (404)
T KOG1409|consen   16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF   95 (404)
T ss_pred             hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence            4667778888887654  456678999999999999532   2211 122234689999999999999999999998877


Q ss_pred             ecCCCCC--ceee----------eecccccccceEEeccCCCeEEEEeecceeeeeec---CCCeeEEEEcCCCCEEEEE
Q 043707          189 KVSRKNP--SVHK----------RVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRH---YDAVSCLSLNAEQGLLYSG  253 (347)
Q Consensus       189 d~~~~~~--~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~V~~l~~~~~~~~l~s~  253 (347)
                      -+...-.  ....          .+.......-++....+....+...+....  ++|   ....+++.+.-  .+.+.|
T Consensus        96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~--lg~Y~~~~~~t~~~~d~--~~~fvG  171 (404)
T KOG1409|consen   96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNR--LGGYNFETPASALQFDA--LYAFVG  171 (404)
T ss_pred             EhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCc--ccceEeeccCCCCceee--EEEEec
Confidence            6543210  0000          000000000011111111111111110000  000   00111111111  155566


Q ss_pred             eCCCcEEEEeCC--CCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEE
Q 043707          254 SWDKTLKVWRIS--DCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITAL  330 (347)
Q Consensus       254 s~dg~i~vwdl~--~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l  330 (347)
                      ...|.|.+-.+.  .-.++.++++|.+.+.++.|.+.. .+++|..|..|.+||+-....     ....+.+|...|..+
T Consensus       172 d~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g-----~~~el~gh~~kV~~l  246 (404)
T KOG1409|consen  172 DHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG-----TAYELQGHNDKVQAL  246 (404)
T ss_pred             ccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcc-----eeeeeccchhhhhhh
Confidence            666666665543  345788899999999999998864 999999999999999964332     456678899999999


Q ss_pred             EEccCCCEEEEecCCCC
Q 043707          331 AVNQESAVVYCGSSDGL  347 (347)
Q Consensus       331 ~~~p~~~~l~sgs~DG~  347 (347)
                      ...+--+.|++++.||.
T Consensus       247 ~~~~~t~~l~S~~edg~  263 (404)
T KOG1409|consen  247 SYAQHTRQLISCGEDGG  263 (404)
T ss_pred             hhhhhheeeeeccCCCe
Confidence            98888899999999983

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.80  E-value=5.2e-08  Score=80.34  Aligned_cols=144  Identities=19%  Similarity=0.256  Sum_probs=94.7

Q ss_pred             ecCCEEEEecCCCcEEEEeCCCcceee---ecCCCCeeEEEEeCCCCEEEEEeC-----CCcEEEEecCCCCCceeeeec
Q 043707          131 ASGDLLYTGSDSKNIRVWKNLKEFSGF---KSNSGLVKAIIITGDSNKIFTGHQ-----DGKIRIWKVSRKNPSVHKRVG  202 (347)
Q Consensus       131 ~~~~~l~tg~~dg~I~vwd~~~~~~~~---~~h~~~V~~l~~sp~~~~l~s~~~-----Dg~I~vwd~~~~~~~~~~~~~  202 (347)
                      .-++.++++..||.+.+.+..+.++..   ..-...--+.++...++.+.++..     -+..+.|+++..+......  
T Consensus        99 ~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~--  176 (319)
T KOG4714|consen   99 MTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK--  176 (319)
T ss_pred             ccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccc--
Confidence            346789999999999999866532211   111111122233334444444331     1234455554332111000  


Q ss_pred             ccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCE-EEEEEecCCCcE
Q 043707          203 SLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCK-CLESINAHDDAI  280 (347)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwdl~~~~-~~~~~~~h~~~v  280 (347)
                                                    ...+.|.+++-+|. .+++++|+.||.+.+||.+... +...+++|+.++
T Consensus       177 ------------------------------~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i  226 (319)
T KOG4714|consen  177 ------------------------------KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEI  226 (319)
T ss_pred             ------------------------------cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhh
Confidence                                          13345899999995 6678888999999999999874 445568999999


Q ss_pred             EEEEeCCCC--EEEEEeCCCcEEEEEcc
Q 043707          281 NSVVAGFDS--LVFTGSADGTVKVWRRE  306 (347)
Q Consensus       281 ~~i~~~~~~--~l~s~~~dg~I~vwd~~  306 (347)
                      +.+-|+|..  .|+++++||.+..||..
T Consensus       227 ~eV~FHpk~p~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  227 WEVHFHPKNPEHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             hheeccCCCchheeEecCCCcEEEEcCC
Confidence            999999975  89999999999999987

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.77  E-value=4.2e-06  Score=72.52  Aligned_cols=188  Identities=10%  Similarity=0.168  Sum_probs=126.0

Q ss_pred             EEeecCCEEEEec-CCCcEEEEeCCC-----cceeeecCCCC----------eeEEEEeCCCCEEEEEeC-CCcEEEEec
Q 043707          128 SLAASGDLLYTGS-DSKNIRVWKNLK-----EFSGFKSNSGL----------VKAIIITGDSNKIFTGHQ-DGKIRIWKV  190 (347)
Q Consensus       128 ~l~~~~~~l~tg~-~dg~I~vwd~~~-----~~~~~~~h~~~----------V~~l~~sp~~~~l~s~~~-Dg~I~vwd~  190 (347)
                      +++.+|++|+++. ..|.|.++-+..     .......|.+.          +....+.|++++|+++.. -.+|.+|++
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence            5556687777774 457889986432     12223345444          889999999999988863 237999999


Q ss_pred             CCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCCC-E
Q 043707          191 SRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRISDC-K  268 (347)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~vwdl~~~-~  268 (347)
                      ..+..........                             .-...-+.|.|+|++++.+...+ +++|.+|..... .
T Consensus       175 ~dg~L~~~~~~~v-----------------------------~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g  225 (346)
T COG2706         175 DDGKLTPADPAEV-----------------------------KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVG  225 (346)
T ss_pred             ccCcccccccccc-----------------------------CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCc
Confidence            9776433322111                             13445678999999999888776 899999998763 2


Q ss_pred             EEEEEec---------CCCcEEEEEeCCCC-EEEEEe-CCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCC
Q 043707          269 CLESINA---------HDDAINSVVAGFDS-LVFTGS-ADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESA  337 (347)
Q Consensus       269 ~~~~~~~---------h~~~v~~i~~~~~~-~l~s~~-~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~  337 (347)
                      .+..++.         .......|..++|| +|+++. ....|.+|.+...+.  ..........+.....+..|++.++
T Consensus       226 ~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g--~L~~~~~~~teg~~PR~F~i~~~g~  303 (346)
T COG2706         226 KFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGG--KLELVGITPTEGQFPRDFNINPSGR  303 (346)
T ss_pred             eEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCC--EEEEEEEeccCCcCCccceeCCCCC
Confidence            2333322         13456788899999 555543 355888888864432  2333344444555678999999999


Q ss_pred             EEEEecCCC
Q 043707          338 VVYCGSSDG  346 (347)
Q Consensus       338 ~l~sgs~DG  346 (347)
                      +|+++..|+
T Consensus       304 ~Liaa~q~s  312 (346)
T COG2706         304 FLIAANQKS  312 (346)
T ss_pred             EEEEEccCC
Confidence            999998875

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=98.77  E-value=7.5e-08  Score=81.94  Aligned_cols=138  Identities=14%  Similarity=0.137  Sum_probs=103.6

Q ss_pred             EEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC
Q 043707          166 AIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA  245 (347)
Q Consensus       166 ~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~  245 (347)
                      -.+|+|+|+++++++.- .+.|-|..+-+......                                 --+.|.-+.|..
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~---------------------------------cldki~yieW~a   58 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL---------------------------------CLDKIVYIEWKA   58 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH---------------------------------HHHHhhheeeec
Confidence            35799999999999866 67777776654221111                                 124566788888


Q ss_pred             CCCEEEEE-eCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhc
Q 043707          246 EQGLLYSG-SWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLK  322 (347)
Q Consensus       246 ~~~~l~s~-s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~  322 (347)
                      |.-+++.+ ..|+.|.+|++.+.+-...+.....++..+.|+|||  +|.+..-|-+|.||.+.+...       ..+.-
T Consensus        59 ds~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~-------~~~~~  131 (447)
T KOG4497|consen   59 DSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG-------YLLPH  131 (447)
T ss_pred             cceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee-------EEecc
Confidence            87665554 568899999999998888888888899999999998  777888899999999975432       11222


Q ss_pred             cCCcEEEEEEccCCCEEEEecC
Q 043707          323 QENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       323 h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      ....+..++|+|+|++.+.++.
T Consensus       132 pK~~~kg~~f~~dg~f~ai~sR  153 (447)
T KOG4497|consen  132 PKTNVKGYAFHPDGQFCAILSR  153 (447)
T ss_pred             cccCceeEEECCCCceeeeeec
Confidence            2446789999999999887654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.76  E-value=3e-08  Score=84.79  Aligned_cols=165  Identities=17%  Similarity=0.280  Sum_probs=110.6

Q ss_pred             eccccEEEEeec--CCEEEEecCCCcEEEEeCCCc---ce--eeecC-----CCCeeEEEEeC-CCCEEEEEeCCCcEEE
Q 043707          121 RKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE---FS--GFKSN-----SGLVKAIIITG-DSNKIFTGHQDGKIRI  187 (347)
Q Consensus       121 ~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~~~---~~--~~~~h-----~~~V~~l~~sp-~~~~l~s~~~Dg~I~v  187 (347)
                      +|+-+|.+++.+  ...++++. |-.|.+|++...   +.  .++.+     +..|++..|+| ..+.|+-.+..|+||+
T Consensus       162 aHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL  240 (433)
T KOG1354|consen  162 AHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL  240 (433)
T ss_pred             cceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence            588899999975  44666654 778999985422   11  12222     35688999999 4567888888999999


Q ss_pred             EecCCCCCce-eeeecc---cccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 043707          188 WKVSRKNPSV-HKRVGS---LPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWR  263 (347)
Q Consensus       188 wd~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwd  263 (347)
                      -|++...... +.....   .|....+                    ..+--..|..+.|+.+|+++++-+. -++++||
T Consensus       241 cDmR~~aLCd~hsKlfEepedp~~rsf--------------------fseiIsSISDvKFs~sGryilsRDy-ltvk~wD  299 (433)
T KOG1354|consen  241 CDMRQSALCDAHSKLFEEPEDPSSRSF--------------------FSEIISSISDVKFSHSGRYILSRDY-LTVKLWD  299 (433)
T ss_pred             eechhhhhhcchhhhhccccCCcchhh--------------------HHHHhhhhhceEEccCCcEEEEecc-ceeEEEe
Confidence            9999654211 111111   1111110                    0012345888999999999998653 6899999


Q ss_pred             C-CCCEEEEEEecCCC------------cE---EEEEeCCCC-EEEEEeCCCcEEEEEccc
Q 043707          264 I-SDCKCLESINAHDD------------AI---NSVVAGFDS-LVFTGSADGTVKVWRREL  307 (347)
Q Consensus       264 l-~~~~~~~~~~~h~~------------~v---~~i~~~~~~-~l~s~~~dg~I~vwd~~~  307 (347)
                      + ...+++.+++.|..            .|   ..+.|+.++ .++||+..+.++++++..
T Consensus       300 ~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~  360 (433)
T KOG1354|consen  300 LNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLAR  360 (433)
T ss_pred             ccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCC
Confidence            9 56788888877642            22   345676655 999999999999999653

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.75  E-value=1.4e-07  Score=87.99  Aligned_cols=112  Identities=13%  Similarity=0.124  Sum_probs=85.9

Q ss_pred             ccEEEEeec--CCEEEEecCCCcEEEEeCCCc-----------------ceeeecCCCCeeEEEEeCCCCEEEEEeCCCc
Q 043707          124 GHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE-----------------FSGFKSNSGLVKAIIITGDSNKIFTGHQDGK  184 (347)
Q Consensus       124 ~~V~~l~~~--~~~l~tg~~dg~I~vwd~~~~-----------------~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~  184 (347)
                      ....|+.|+  ..+++.|+.||.++|..+.+.                 -+++.+|.+.|.-+.|+.+.+.|-|...+|.
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl   94 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL   94 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence            345688886  569999999999999963311                 3457899999999999999999999999999


Q ss_pred             EEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 043707          185 IRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI  264 (347)
Q Consensus       185 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl  264 (347)
                      |.||=+-.+.-...+...                              +...-|.+++|+.+|..+...-.||.|.|=.+
T Consensus        95 IiVWmlykgsW~EEMiNn------------------------------RnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv  144 (1189)
T KOG2041|consen   95 IIVWMLYKGSWCEEMINN------------------------------RNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV  144 (1189)
T ss_pred             EEEEeeecccHHHHHhhC------------------------------cCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence            999988766422211111                              24566889999999998888888888776665


Q ss_pred             C
Q 043707          265 S  265 (347)
Q Consensus       265 ~  265 (347)
                      +
T Consensus       145 d  145 (1189)
T KOG2041|consen  145 D  145 (1189)
T ss_pred             c
Confidence            4

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.75  E-value=3.1e-08  Score=58.79  Aligned_cols=37  Identities=30%  Similarity=0.595  Sum_probs=34.2

Q ss_pred             cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707          153 EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK  189 (347)
Q Consensus       153 ~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd  189 (347)
                      .+..+.+|.+.|.+|+|+|++++|++|+.|++|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4677899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.74  E-value=6.5e-08  Score=84.30  Aligned_cols=103  Identities=25%  Similarity=0.331  Sum_probs=80.1

Q ss_pred             cCCCcEEEEeCC-CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCC
Q 043707          140 SDSKNIRVWKNL-KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPK  218 (347)
Q Consensus       140 ~~dg~I~vwd~~-~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (347)
                      ++...+.+|... ......-+|-..+++++|+||++.|+++..|.+|||-.......+....                  
T Consensus       129 gD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc------------------  190 (390)
T KOG3914|consen  129 GDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC------------------  190 (390)
T ss_pred             CCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc------------------
Confidence            334445555443 4455677899999999999999999999999999998776543222222                  


Q ss_pred             eEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEe
Q 043707          219 NYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN  274 (347)
Q Consensus       219 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~  274 (347)
                                   .+|..-|..+++-++ ..|++++.|+++++||+++++++.++.
T Consensus       191 -------------lGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  191 -------------LGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             -------------cccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCcccccc
Confidence                         259999999998865 558999999999999999999887664

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.72  E-value=4.6e-08  Score=88.56  Aligned_cols=165  Identities=14%  Similarity=0.251  Sum_probs=118.9

Q ss_pred             eeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC---------CcceeeecCCCCeeEEEEeCCCCEEEEEeCCC
Q 043707          115 LIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL---------KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDG  183 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~---------~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg  183 (347)
                      .+..+.+|+..|.++..  +.+-+++++.|++|++|.+.         .+..+++.|+.+|.++-|-.+-++++++  ||
T Consensus       727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~  804 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG  804 (1034)
T ss_pred             eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence            35667789998888774  56689999999999999743         2345678899999999999987777766  88


Q ss_pred             cEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEE-eCCCcEEEE
Q 043707          184 KIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSG-SWDKTLKVW  262 (347)
Q Consensus       184 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~dg~i~vw  262 (347)
                      -|.+||---++.........  .                         .+..+.|.|+. +-+..++..| +...+++++
T Consensus       805 giHlWDPFigr~Laq~~dap--k-------------------------~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~  856 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQMEDAP--K-------------------------EGAGGNIKCLE-NVDRHILIAGCSAESTVKLF  856 (1034)
T ss_pred             cceeecccccchhHhhhcCc--c-------------------------cCCCceeEecc-cCcchheeeeccchhhheee
Confidence            99999976554432221110  0                         01223344443 2244455554 678999999


Q ss_pred             eCCCCEEEEEEe-----cCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCC
Q 043707          263 RISDCKCLESIN-----AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQG  309 (347)
Q Consensus       263 dl~~~~~~~~~~-----~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~  309 (347)
                      |.+..+-...++     +....+.+++..+.| .++++-..|.|.+.|.+++.
T Consensus       857 DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~  909 (1034)
T KOG4190|consen  857 DARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK  909 (1034)
T ss_pred             ecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc
Confidence            999887665554     334568899998887 89999999999999998765

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.71  E-value=2.6e-06  Score=85.96  Aligned_cols=217  Identities=13%  Similarity=0.061  Sum_probs=132.5

Q ss_pred             cccEEEEee--cCCEEEEecCCCcEEEE----eCCCc-ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCC
Q 043707          123 EGHIYSLAA--SGDLLYTGSDSKNIRVW----KNLKE-FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNP  195 (347)
Q Consensus       123 ~~~V~~l~~--~~~~l~tg~~dg~I~vw----d~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~  195 (347)
                      .+.|.++.+  +...++.+..+|.|.+.    +.... ....-.-...|.+++|+||+..|+....+++|.+-.- +-.+
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~  153 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDP  153 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceE
Confidence            356777775  45678888888999998    54433 3333345678999999999999999999999887642 2222


Q ss_pred             ceeeeeccc-ccccceEEeccCCC-eEEEEeecce---------------eeeeecCCCeeEEEEcCCCCEEEEEeC---
Q 043707          196 SVHKRVGSL-PTFKDYVKSSVNPK-NYVEVRRNRN---------------VLKIRHYDAVSCLSLNAEQGLLYSGSW---  255 (347)
Q Consensus       196 ~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~---------------~~~~~h~~~V~~l~~~~~~~~l~s~s~---  255 (347)
                      .....+... ......+..++..+ +.+.-..++.               .... +.+.-..|+|-.||.++++.+.   
T Consensus       154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~  232 (928)
T PF04762_consen  154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPE  232 (928)
T ss_pred             EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcC
Confidence            222222211 11223333333322 1111111110               0111 4456678999999999999875   


Q ss_pred             C---CcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeC---CCcEEEEEcccCCccceeeehhhhhccCCcEE
Q 043707          256 D---KTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSA---DGTVKVWRRELQGKGTKHFLAQVLLKQENAIT  328 (347)
Q Consensus       256 d---g~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~---dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~  328 (347)
                      +   +.|+||+- +|....+-..-.+--.+++|.|.| +||+.-.   ...|.+|..+....  ....+. +......|.
T Consensus       233 ~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrh--geF~l~-~~~~~~~v~  308 (928)
T PF04762_consen  233 TGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRH--GEFTLR-FDPEEEKVI  308 (928)
T ss_pred             CCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEe--eeEecC-CCCCCceee
Confidence            2   57999994 576555554444445678999999 5555443   35677776652221  111111 123466899


Q ss_pred             EEEEccCCCEEEEecCC
Q 043707          329 ALAVNQESAVVYCGSSD  345 (347)
Q Consensus       329 ~l~~~p~~~~l~sgs~D  345 (347)
                      .|+|++++..||.--.|
T Consensus       309 ~l~Wn~ds~iLAv~~~~  325 (928)
T PF04762_consen  309 ELAWNSDSEILAVWLED  325 (928)
T ss_pred             EEEECCCCCEEEEEecC
Confidence            99999999999986654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.70  E-value=3.5e-05  Score=68.94  Aligned_cols=219  Identities=11%  Similarity=0.060  Sum_probs=125.3

Q ss_pred             ceeEeeeeccccEEEEeecCCEEEEecC----------CCcEEEEeCCCc--ceeeec-------CCCCeeEEEEeCCCC
Q 043707          114 GLIGSIVRKEGHIYSLAASGDLLYTGSD----------SKNIRVWKNLKE--FSGFKS-------NSGLVKAIIITGDSN  174 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~~~~~l~tg~~----------dg~I~vwd~~~~--~~~~~~-------h~~~V~~l~~sp~~~  174 (347)
                      +.+.++..-..+-..++++++.|+.+..          +..|.+||....  ...+..       .......++++|+|+
T Consensus        38 ~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk  117 (352)
T TIGR02658        38 RVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNK  117 (352)
T ss_pred             EEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCC
Confidence            3455555433322238888887776654          789999996543  323321       122344789999999


Q ss_pred             EEEEEe-C-CCcEEEEecCCCCCceeeeecccccccceEEe--------ccCCCeEE-EEeecceee----eeecC--CC
Q 043707          175 KIFTGH-Q-DGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKS--------SVNPKNYV-EVRRNRNVL----KIRHY--DA  237 (347)
Q Consensus       175 ~l~s~~-~-Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~-~~~~~~~~~----~~~h~--~~  237 (347)
                      +|+... . +..|-+.|+.+++......+   |.+...+..        +.+..... .........    .+-+.  ..
T Consensus       118 ~l~V~n~~p~~~V~VvD~~~~kvv~ei~v---p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~  194 (352)
T TIGR02658       118 TLLFYQFSPSPAVGVVDLEGKAFVRMMDV---PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEY  194 (352)
T ss_pred             EEEEecCCCCCEEEEEECCCCcEEEEEeC---CCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccc
Confidence            998776 3 68999999999987665554   333333322        23332222 111111100    01011  00


Q ss_pred             e-eEEEEcC-CCCEEEEEeCCCcEEEEeCCC-----CEEEEEEec-------CCCcEEEEEeCCCC-EEEEEe-------
Q 043707          238 V-SCLSLNA-EQGLLYSGSWDKTLKVWRISD-----CKCLESINA-------HDDAINSVVAGFDS-LVFTGS-------  295 (347)
Q Consensus       238 V-~~l~~~~-~~~~l~s~s~dg~i~vwdl~~-----~~~~~~~~~-------h~~~v~~i~~~~~~-~l~s~~-------  295 (347)
                      + ..-.|.+ ++.+++.... |+|.+.|+..     .+.+..+..       ..+.+.-+++++++ .++...       
T Consensus       195 v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~t  273 (352)
T TIGR02658       195 LINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWT  273 (352)
T ss_pred             cccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCcccc
Confidence            0 0003344 7888888776 9999999643     233333321       22334458999987 444421       


Q ss_pred             ---CCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCC-EEEEec
Q 043707          296 ---ADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESA-VVYCGS  343 (347)
Q Consensus       296 ---~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~l~sgs  343 (347)
                         ..+.|.++|..+.+.      +..+.. ...+..|+++||++ +|++..
T Consensus       274 hk~~~~~V~ViD~~t~kv------i~~i~v-G~~~~~iavS~Dgkp~lyvtn  318 (352)
T TIGR02658       274 HKTASRFLFVVDAKTGKR------LRKIEL-GHEIDSINVSQDAKPLLYALS  318 (352)
T ss_pred             ccCCCCEEEEEECCCCeE------EEEEeC-CCceeeEEECCCCCeEEEEeC
Confidence               225899999875543      222221 34889999999999 887665

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.69  E-value=7.2e-08  Score=57.19  Aligned_cols=38  Identities=37%  Similarity=0.767  Sum_probs=35.7

Q ss_pred             CEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEE
Q 043707          267 CKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWR  304 (347)
Q Consensus       267 ~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd  304 (347)
                      ++++.++++|.+.|++|+|+|++ +|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            47889999999999999999996 999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.69  E-value=3.1e-06  Score=75.69  Aligned_cols=171  Identities=13%  Similarity=0.099  Sum_probs=128.2

Q ss_pred             cCCEEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCC-cEEEEecCCCCCceeeeecccccccce
Q 043707          132 SGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDG-KIRIWKVSRKNPSVHKRVGSLPTFKDY  210 (347)
Q Consensus       132 ~~~~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg-~I~vwd~~~~~~~~~~~~~~~~~~~~~  210 (347)
                      +|++++..+. |...|.+........-+|.+.|.-..+..+++-++.|..|| .+-|+|.++++.....           
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e-----------  398 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE-----------  398 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee-----------
Confidence            4778877775 67788776666555667888899888888888999999999 8999999987532211           


Q ss_pred             EEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-
Q 043707          211 VKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-  289 (347)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-  289 (347)
                                            +.-+.|..+..+++|+.++.+.....|.+.|+.+++....-+...+-|+.+.|+|++ 
T Consensus       399 ----------------------~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr  456 (668)
T COG4946         399 ----------------------KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSR  456 (668)
T ss_pred             ----------------------CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCce
Confidence                                  255778999999999999999988999999999998776666677889999999998 


Q ss_pred             EEEEEeCCC----cEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          290 LVFTGSADG----TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       290 ~l~s~~~dg----~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                      ++|-+--+|    .|+++|+...+    ..-+.+-.+|.   .+-+|.|++++|+--+
T Consensus       457 ~iAYafP~gy~tq~Iklydm~~~K----iy~vTT~ta~D---fsPaFD~d~ryLYfLs  507 (668)
T COG4946         457 WIAYAFPEGYYTQSIKLYDMDGGK----IYDVTTPTAYD---FSPAFDPDGRYLYFLS  507 (668)
T ss_pred             eEEEecCcceeeeeEEEEecCCCe----EEEecCCcccc---cCcccCCCCcEEEEEe
Confidence            666555454    78999997432    22222222332   3557888888876544

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.66  E-value=1.4e-07  Score=95.82  Aligned_cols=152  Identities=21%  Similarity=0.245  Sum_probs=122.9

Q ss_pred             eecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCC
Q 043707          157 FKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYD  236 (347)
Q Consensus       157 ~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  236 (347)
                      .+.+-..|.++.=+|...+.+||+.||.|++|....++.....+..                               ...
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-------------------------------g~s 2252 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-------------------------------GNS 2252 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-------------------------------Ccc
Confidence            3444566778888888889999999999999999887765544433                               337


Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEEEEEe---CCCcEEEEEcccCCccce
Q 043707          237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGS---ADGTVKVWRRELQGKGTK  313 (347)
Q Consensus       237 ~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~---~dg~I~vwd~~~~~~~~~  313 (347)
                      .|+.+.|+.+|+.+..+..||.+-+|... .++....+.|........|-. ..+++++   .++.+.+||......   
T Consensus      2253 ~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~~~~--- 2327 (2439)
T KOG1064|consen 2253 RVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG-SLLATAGRSSDNRNVCLWDTLLPPM--- 2327 (2439)
T ss_pred             hhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee-hhhhccccCCCCCcccchhcccCcc---
Confidence            78899999999999999999999999986 678888889998888888865 5566554   578999999875443   


Q ss_pred             eeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          314 HFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       314 ~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      ..++.  ..|.+.++++++.|..+.|++||.+|
T Consensus      2328 ~s~v~--~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2328 NSLVH--TCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred             cceee--eecCCCceEEEEcCcceEEEecCCcC
Confidence            22333  78999999999999999999999998

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.64  E-value=3e-06  Score=70.50  Aligned_cols=169  Identities=11%  Similarity=-0.002  Sum_probs=111.3

Q ss_pred             CCEEEEecCCCcEEEEeCCCc---ceeeecCCCCeeEEEE-eCCCCEEEEEeCCCcEEEEecCCCCCceeeeeccccccc
Q 043707          133 GDLLYTGSDSKNIRVWKNLKE---FSGFKSNSGLVKAIII-TGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFK  208 (347)
Q Consensus       133 ~~~l~tg~~dg~I~vwd~~~~---~~~~~~h~~~V~~l~~-sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~  208 (347)
                      -.+||.|+..|...+|.....   ......|...|+-+.= .-..-.+..++.|.++++.+++.+......         
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~---------  154 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV---------  154 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee---------
Confidence            348999999999999985422   2222233332222111 112235778889999999988766432211         


Q ss_pred             ceEEeccCCCeEEEEeecceeeeeecCCC--eeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-EEEEE--EecCCCcEEEE
Q 043707          209 DYVKSSVNPKNYVEVRRNRNVLKIRHYDA--VSCLSLNAEQGLLYSGSWDKTLKVWRISDC-KCLES--INAHDDAINSV  283 (347)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~-~~~~~--~~~h~~~v~~i  283 (347)
                                               |...  +..++++++++++++.+....|-.|.+... +-+..  .....+.-.+.
T Consensus       155 -------------------------h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~  209 (344)
T KOG4532|consen  155 -------------------------HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN  209 (344)
T ss_pred             -------------------------eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence                                     3333  778999999999999999999999998643 22222  22233344567


Q ss_pred             EeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCC
Q 043707          284 VAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQES  336 (347)
Q Consensus       284 ~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~  336 (347)
                      .|+... .+|++..||++.|||++....... .....-..|.+.|..+.|++-|
T Consensus       210 S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~-~~sstrp~hnGa~R~c~Fsl~g  262 (344)
T KOG4532|consen  210 SFSENDLQFAVVFQDGTCAIYDVRNMATPMA-EISSTRPHHNGAFRVCRFSLYG  262 (344)
T ss_pred             eeccCcceEEEEecCCcEEEEEecccccchh-hhcccCCCCCCceEEEEecCCC
Confidence            787655 899999999999999996553111 1122334589999999999865

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.54  E-value=1.5e-06  Score=82.24  Aligned_cols=174  Identities=14%  Similarity=0.100  Sum_probs=116.7

Q ss_pred             ccEEEEeecCCEEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecc
Q 043707          124 GHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGS  203 (347)
Q Consensus       124 ~~V~~l~~~~~~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~  203 (347)
                      ..+.|...++++|+-|..+|.|++++..........|+..      .-+|.+++||+.||+|.|--+-+.+.....    
T Consensus        40 D~is~~av~~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~----  109 (846)
T KOG2066|consen   40 DAISCCAVHDKFFALGTHRGAVYLTTCQGNPKTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY----  109 (846)
T ss_pred             hHHHHHHhhcceeeeccccceEEEEecCCccccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE----
Confidence            4567788889999999999999999966554555556544      558999999999999999888776543322    


Q ss_pred             cccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-----CCEEEEEeCCCcEEEEeCCCC---EEEEEEec
Q 043707          204 LPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-----QGLLYSGSWDKTLKVWRISDC---KCLESINA  275 (347)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-----~~~l~s~s~dg~i~vwdl~~~---~~~~~~~~  275 (347)
                                                   ....++..++++|+     .+.+++|+.-| +.++.-+=.   ..+ .+..
T Consensus       110 -----------------------------df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~  158 (846)
T KOG2066|consen  110 -----------------------------DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSE  158 (846)
T ss_pred             -----------------------------ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeec
Confidence                                         24567899999997     56899999888 777764311   222 3555


Q ss_pred             CCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEE
Q 043707          276 HDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVY  340 (347)
Q Consensus       276 h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~  340 (347)
                      -.++|.+|.|. ..++|=+. |--|+|||+.....-....+.......+.--..+.|.++.++++
T Consensus       159 ~eG~I~~i~W~-g~lIAWan-d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI  221 (846)
T KOG2066|consen  159 GEGPIHSIKWR-GNLIAWAN-DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI  221 (846)
T ss_pred             CccceEEEEec-CcEEEEec-CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE
Confidence            67899999995 23555554 55589999986543111111111111222344677776655443

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.54  E-value=6.4e-06  Score=75.04  Aligned_cols=126  Identities=13%  Similarity=0.215  Sum_probs=92.5

Q ss_pred             cEEEEeCCCcceeeec-CCCCeeEEEEeCCCCEEEEEe--CCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeE
Q 043707          144 NIRVWKNLKEFSGFKS-NSGLVKAIIITGDSNKIFTGH--QDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNY  220 (347)
Q Consensus       144 ~I~vwd~~~~~~~~~~-h~~~V~~l~~sp~~~~l~s~~--~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (347)
                      ++++.++......+.. -.++|.++.|+|+++.|+.+.  .--++.|+|++..-   ....                   
T Consensus       252 ~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~---v~df-------------------  309 (566)
T KOG2315|consen  252 TLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP---VFDF-------------------  309 (566)
T ss_pred             eEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE---eEeC-------------------
Confidence            4566655533223332 368999999999998877654  45678899987541   1111                   


Q ss_pred             EEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC---CCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEe-
Q 043707          221 VEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW---DKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGS-  295 (347)
Q Consensus       221 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~-  295 (347)
                                   -.++=+++-|+|.|++|+.++-   -|.|-|||+.+.+++..+.+-..  +-+.|+||| +|+|+. 
T Consensus       310 -------------~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATT  374 (566)
T KOG2315|consen  310 -------------PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATT  374 (566)
T ss_pred             -------------CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEec
Confidence                         3456678999999999998876   57899999999999999987655  447899999 666554 


Q ss_pred             -----CCCcEEEEEcc
Q 043707          296 -----ADGTVKVWRRE  306 (347)
Q Consensus       296 -----~dg~I~vwd~~  306 (347)
                           -|+.++||+..
T Consensus       375 aPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  375 APRLRVDNGIKIWHYT  390 (566)
T ss_pred             cccEEecCCeEEEEec
Confidence                 37899999986

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.54  E-value=1.3e-07  Score=85.62  Aligned_cols=165  Identities=15%  Similarity=0.213  Sum_probs=112.6

Q ss_pred             ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeee
Q 043707          154 FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIR  233 (347)
Q Consensus       154 ~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (347)
                      +..+.+|+..|..++--.+.+-+++++.|++|++|.++...-.....                         ..+.....
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~ts-------------------------aCQfTY~a  782 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTS-------------------------ACQFTYQA  782 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccc-------------------------eeeeEhhh
Confidence            55688999999998877778899999999999999997643111100                         01112235


Q ss_pred             cCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEe--cCCCcEEEEEeCCC---C-EEEEEeCCCcEEEEEccc
Q 043707          234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN--AHDDAINSVVAGFD---S-LVFTGSADGTVKVWRREL  307 (347)
Q Consensus       234 h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~--~h~~~v~~i~~~~~---~-~l~s~~~dg~I~vwd~~~  307 (347)
                      |..+|..+.|-.+.++++++  ||.|.+||.--++++..+.  ...+.+..+.+-+.   . +++.++...+|+++|.+.
T Consensus       783 Hkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRs  860 (1034)
T KOG4190|consen  783 HKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARS  860 (1034)
T ss_pred             ccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccc
Confidence            99999999999887777654  7899999988787776442  12233334444333   2 444457899999999986


Q ss_pred             CCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          308 QGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       308 ~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      .+- .....+....+....+.+++..+.|+.++++=+.|
T Consensus       861 ce~-~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnG  898 (1034)
T KOG4190|consen  861 CEW-TCELKVCNAPGPNALTRAIAVADKGNKLAAALSNG  898 (1034)
T ss_pred             ccc-eeeEEeccCCCCchheeEEEeccCcchhhHHhcCC
Confidence            542 11111222234566789999999999998876665

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.52  E-value=9.9e-06  Score=77.42  Aligned_cols=195  Identities=13%  Similarity=0.220  Sum_probs=129.5

Q ss_pred             cEEEEeecCCEEEEecCCCcEEEEeCCCc-ceeeecCCCC-eeEEEEeCCCCEEEEEeCCCc-----EEEEecCCCCCce
Q 043707          125 HIYSLAASGDLLYTGSDSKNIRVWKNLKE-FSGFKSNSGL-VKAIIITGDSNKIFTGHQDGK-----IRIWKVSRKNPSV  197 (347)
Q Consensus       125 ~V~~l~~~~~~l~tg~~dg~I~vwd~~~~-~~~~~~h~~~-V~~l~~sp~~~~l~s~~~Dg~-----I~vwd~~~~~~~~  197 (347)
                      .|.|+..++..++.|+.+|.|.+.+..-. ...|+.+... |.-+....+...|++-+.|+.     |+||+++..+...
T Consensus        27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~  106 (933)
T KOG2114|consen   27 AISCCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN  106 (933)
T ss_pred             ceeEEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence            78899999999999999999999986544 4888888777 555544445568888887765     8999998653211


Q ss_pred             -eeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC---C-CEEEEE
Q 043707          198 -HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS---D-CKCLES  272 (347)
Q Consensus       198 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~---~-~~~~~~  272 (347)
                       ...+...                 .+..   ........++.+++.+.+-..++.|-.+|.|..+.-.   + +....-
T Consensus       107 sP~c~~~~-----------------ri~~---~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~  166 (933)
T KOG2114|consen  107 SPQCLYEH-----------------RIFT---IKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDY  166 (933)
T ss_pred             Ccceeeee-----------------eeec---cCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceee
Confidence             0000000                 0000   0000145678999999999999999999999988532   1 111111


Q ss_pred             EecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707          273 INAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       273 ~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                      ...-..+|+.+++..++  .++++ .-..|.+|.+.  ++  . .....+..|...+.|..+++....+++|+..
T Consensus       167 ~~~~~~pITgL~~~~d~~s~lFv~-Tt~~V~~y~l~--gr--~-p~~~~ld~~G~~lnCss~~~~t~qfIca~~e  235 (933)
T KOG2114|consen  167 SHRGKEPITGLALRSDGKSVLFVA-TTEQVMLYSLS--GR--T-PSLKVLDNNGISLNCSSFSDGTYQFICAGSE  235 (933)
T ss_pred             eccCCCCceeeEEecCCceeEEEE-ecceeEEEEec--CC--C-cceeeeccCCccceeeecCCCCccEEEecCc
Confidence            12236789999998877  33333 34578999987  32  1 2345577888899999999876645555543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.50  E-value=0.0001  Score=64.12  Aligned_cols=202  Identities=11%  Similarity=0.137  Sum_probs=119.8

Q ss_pred             CCcEEEEeCCCc-----ceeeecCCCCeeEEEEeCCCCEEEEEeCC---CcEEEEecCC--CCCceeeeecccccccceE
Q 043707          142 SKNIRVWKNLKE-----FSGFKSNSGLVKAIIITGDSNKIFTGHQD---GKIRIWKVSR--KNPSVHKRVGSLPTFKDYV  211 (347)
Q Consensus       142 dg~I~vwd~~~~-----~~~~~~h~~~V~~l~~sp~~~~l~s~~~D---g~I~vwd~~~--~~~~~~~~~~~~~~~~~~~  211 (347)
                      +.-|++|++.+.     ....-.+.+.++-|+|+|+++.|+++..+   |.|..|.++.  ++.....+.........++
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            567999986522     12233456778899999999999988755   6788887775  3322211111111111222


Q ss_pred             Ee----------ccCCCeEE--EEeecc----eeeeeecCCC----------eeEEEEcCCCCEEEEEeC-CCcEEEEeC
Q 043707          212 KS----------SVNPKNYV--EVRRNR----NVLKIRHYDA----------VSCLSLNAEQGLLYSGSW-DKTLKVWRI  264 (347)
Q Consensus       212 ~~----------~~~~~~~~--~~~~~~----~~~~~~h~~~----------V~~l~~~~~~~~l~s~s~-dg~i~vwdl  264 (347)
                      ..          ......+.  .+....    ......|.+.          +....+.|++++|++.+. --.|.+|++
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence            22          22222211  111111    1123345555          888999999999998864 235999999


Q ss_pred             CCCEEEEEEe---cCCCcEEEEEeCCCC-EE-EEEeCCCcEEEEEcccCCc-cceeeehhhhhc---cCCcEEEEEEccC
Q 043707          265 SDCKCLESIN---AHDDAINSVVAGFDS-LV-FTGSADGTVKVWRRELQGK-GTKHFLAQVLLK---QENAITALAVNQE  335 (347)
Q Consensus       265 ~~~~~~~~~~---~h~~~v~~i~~~~~~-~l-~s~~~dg~I~vwd~~~~~~-~~~~~~~~~~~~---h~~~V~~l~~~p~  335 (347)
                      .+++....-.   .....-..|+|+|++ +. ++.--+++|.+|....... -...+.+..+..   ...+..+|..++|
T Consensus       175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d  254 (346)
T COG2706         175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD  254 (346)
T ss_pred             ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence            9876432211   234557899999998 33 2455699999999985421 111111122221   2446789999999


Q ss_pred             CCEEEEec
Q 043707          336 SAVVYCGS  343 (347)
Q Consensus       336 ~~~l~sgs  343 (347)
                      |++|+++-
T Consensus       255 GrFLYasN  262 (346)
T COG2706         255 GRFLYASN  262 (346)
T ss_pred             CCEEEEec
Confidence            99999864

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.47  E-value=6.8e-05  Score=71.14  Aligned_cols=209  Identities=11%  Similarity=0.106  Sum_probs=132.8

Q ss_pred             CCCCCCCCccccccc-----------ceeEeeeeccccEEEEeecC--------------CEEEEecCCCcEEEEeCCC-
Q 043707           99 MPPYSPNENLLSSCN-----------GLIGSIVRKEGHIYSLAASG--------------DLLYTGSDSKNIRVWKNLK-  152 (347)
Q Consensus        99 ~~~~~p~~~~~~~~~-----------~~i~~l~~h~~~V~~l~~~~--------------~~l~tg~~dg~I~vwd~~~-  152 (347)
                      ...|+|.|-+..++.           +++.++..|+..|+.+.|..              -+||+++..|.|.+||... 
T Consensus        20 A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~   99 (1062)
T KOG1912|consen   20 AADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA   99 (1062)
T ss_pred             ccccCccceEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh
Confidence            345667766544433           46788889999999998741              1788899999999999553 


Q ss_pred             -cceeeecCCCCeeEEEEeCC---C-CEEEEEeCCCcEEEEecCCCCCceeeeec--------ccccc-cceEEeccCC-
Q 043707          153 -EFSGFKSNSGLVKAIIITGD---S-NKIFTGHQDGKIRIWKVSRKNPSVHKRVG--------SLPTF-KDYVKSSVNP-  217 (347)
Q Consensus       153 -~~~~~~~h~~~V~~l~~sp~---~-~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~-  217 (347)
                       ...-+..|..+|.+++|-+.   . ..|+.-+...+|.+|+..+++........        ..|.. ..+......+ 
T Consensus       100 s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~  179 (1062)
T KOG1912|consen  100 SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGF  179 (1062)
T ss_pred             hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCce
Confidence             34456778889999999772   2 36777777889999999988753222111        11111 1111111111 


Q ss_pred             ---------------CeEEEEeeccee-------ee--eecCC---------CeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 043707          218 ---------------KNYVEVRRNRNV-------LK--IRHYD---------AVSCLSLNAEQGLLYSGSWDKTLKVWRI  264 (347)
Q Consensus       218 ---------------~~~~~~~~~~~~-------~~--~~h~~---------~V~~l~~~~~~~~l~s~s~dg~i~vwdl  264 (347)
                                     ...+++......       ..  ..+..         ....++|+|.-+.++-...-..+.|+|+
T Consensus       180 vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dl  259 (1062)
T KOG1912|consen  180 VLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDL  259 (1062)
T ss_pred             EEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcc
Confidence                           111122111000       00  00000         0123567886444444445678999999


Q ss_pred             CCCEEEEEEecCCCcEEEEEeCCCC---EEEEEeCCCcEEEEEccc
Q 043707          265 SDCKCLESINAHDDAINSVVAGFDS---LVFTGSADGTVKVWRREL  307 (347)
Q Consensus       265 ~~~~~~~~~~~h~~~v~~i~~~~~~---~l~s~~~dg~I~vwd~~~  307 (347)
                      +-..++....-..+.+.-+.+-|++   .|++.-.||.+.+|-.+.
T Consensus       260 e~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  260 EYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             hhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            9999998888777777778888875   899999999999998764

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.46  E-value=8e-07  Score=83.27  Aligned_cols=143  Identities=18%  Similarity=0.248  Sum_probs=105.2

Q ss_pred             EEEEecCCCcEEEEeCCCc-----ceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeeccccccc
Q 043707          135 LLYTGSDSKNIRVWKNLKE-----FSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFK  208 (347)
Q Consensus       135 ~l~tg~~dg~I~vwd~~~~-----~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~  208 (347)
                      +-++......-.+|++...     -..+.+|..+|+++-|.| ....+++++.|-.+..||+++.........       
T Consensus        83 ~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~-------  155 (1081)
T KOG0309|consen   83 YWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS-------  155 (1081)
T ss_pred             eeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee-------
Confidence            3334444455678874322     234568999999999998 445899999999999999987653221110       


Q ss_pred             ceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-EEEEEEecCCCcEEEEEeCC
Q 043707          209 DYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC-KCLESINAHDDAINSVVAGF  287 (347)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~-~~~~~~~~h~~~v~~i~~~~  287 (347)
                                              .-......+.|+-....+++.+..+.|.|||++.+ .++..+++|...|+.+.|..
T Consensus       156 ------------------------~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr  211 (1081)
T KOG0309|consen  156 ------------------------SWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNR  211 (1081)
T ss_pred             ------------------------cccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhh
Confidence                                    12334567889886555556666788999999876 57889999999999998865


Q ss_pred             C--CEEEEEeCCCcEEEEEcccC
Q 043707          288 D--SLVFTGSADGTVKVWRRELQ  308 (347)
Q Consensus       288 ~--~~l~s~~~dg~I~vwd~~~~  308 (347)
                      -  +.+.+++.|++|++||....
T Consensus       212 ~~~s~~~s~~~d~tvkfw~y~kS  234 (1081)
T KOG0309|consen  212 FKYSEIMSSSNDGTVKFWDYSKS  234 (1081)
T ss_pred             hhhhhhcccCCCCceeeeccccc
Confidence            3  48999999999999998744

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.44  E-value=6.8e-07  Score=83.71  Aligned_cols=193  Identities=13%  Similarity=0.115  Sum_probs=107.1

Q ss_pred             eeEeeeeccccEEEEeec---CCEEEEecCCCcEEEEeCCCcce---eeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707          115 LIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLKEFS---GFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW  188 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~~~~~---~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw  188 (347)
                      .-..+.+|...|+.+.++   .+.|++++.|..+..||+.....   .+..-...-..++|+--...++..+....|++|
T Consensus       106 Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vw  185 (1081)
T KOG0309|consen  106 IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVW  185 (1081)
T ss_pred             eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEE
Confidence            455677899999999986   45999999999999999765433   333344566788998743344555556789999


Q ss_pred             ecCCCCCceeeeecccc--------cccceEEeccCCCeEEEEeeccee-----eeeecCCCeeEEEEcCCCC--EEEEE
Q 043707          189 KVSRKNPSVHKRVGSLP--------TFKDYVKSSVNPKNYVEVRRNRNV-----LKIRHYDAVSCLSLNAEQG--LLYSG  253 (347)
Q Consensus       189 d~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~h~~~V~~l~~~~~~~--~l~s~  253 (347)
                      |++.+............        ....-..........+..+.....     ..+....+|..-.+-|-|.  ++.-.
T Consensus       186 d~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~  265 (1081)
T KOG0309|consen  186 DLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPM  265 (1081)
T ss_pred             eccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccc
Confidence            99988643322211000        000000111111222222221111     1111223343333333221  11111


Q ss_pred             eCCCcEEEEeCC---------C-CEEEEEEecCCCcEEEEEeCC--------CC---EEEEEeCCCcEEEEEccc
Q 043707          254 SWDKTLKVWRIS---------D-CKCLESINAHDDAINSVVAGF--------DS---LVFTGSADGTVKVWRREL  307 (347)
Q Consensus       254 s~dg~i~vwdl~---------~-~~~~~~~~~h~~~v~~i~~~~--------~~---~l~s~~~dg~I~vwd~~~  307 (347)
                      -.+..+.+++.+         + .++++.|.+|++.|....|-.        |.   .|+|=+.|..+++|-+..
T Consensus       266 ~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  266 VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             cCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            111122222221         1 257888999998886665532        11   799999999999998863

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.44  E-value=4.8e-05  Score=70.26  Aligned_cols=102  Identities=12%  Similarity=0.156  Sum_probs=75.3

Q ss_pred             eecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCc
Q 043707          232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGK  310 (347)
Q Consensus       232 ~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~  310 (347)
                      +.....|.|++++|+...|+.|+.||.|.+||...+...  +....-..+.++|+|+| +|++|+..|.|.+||+....-
T Consensus       256 ipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi  333 (545)
T PF11768_consen  256 IPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI  333 (545)
T ss_pred             EecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence            457889999999999999999999999999998765333  22344567889999998 888999999999999975432


Q ss_pred             c----------ceeeehhhhhccCCcEEEEEEccC
Q 043707          311 G----------TKHFLAQVLLKQENAITALAVNQE  335 (347)
Q Consensus       311 ~----------~~~~~~~~~~~h~~~V~~l~~~p~  335 (347)
                      .          ...........+...+..+.|.+.
T Consensus       334 ~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~  368 (545)
T PF11768_consen  334 KMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPA  368 (545)
T ss_pred             ceeeccccCCCccEEeeehhccCcchhheeEeccC
Confidence            1          011112233345667778888743

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.40  E-value=7.7e-05  Score=69.19  Aligned_cols=174  Identities=7%  Similarity=-0.005  Sum_probs=97.2

Q ss_pred             EeecCCE-EEEecC---CCcEEEEeCCCc-ceeeecCCCCeeEEEEeCCCCEEEE-EeCC--CcEEEEecCCCCCceeee
Q 043707          129 LAASGDL-LYTGSD---SKNIRVWKNLKE-FSGFKSNSGLVKAIIITGDSNKIFT-GHQD--GKIRIWKVSRKNPSVHKR  200 (347)
Q Consensus       129 l~~~~~~-l~tg~~---dg~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s-~~~D--g~I~vwd~~~~~~~~~~~  200 (347)
                      ++++|+. ++..+.   +..|+++|.... .+.+....+.+....|+|||+.|+. .+.+  ..|.++|+.+++..... 
T Consensus       195 wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT-  273 (419)
T PRK04043        195 WANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQIT-  273 (419)
T ss_pred             ECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcc-
Confidence            3345663 443322   346777786433 3333345566677889999987654 4334  45667777665421111 


Q ss_pred             ecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCEEEEEEecCC
Q 043707          201 VGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DK--TLKVWRISDCKCLESINAHD  277 (347)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg--~i~vwdl~~~~~~~~~~~h~  277 (347)
                                                      .+........|+|||+.|+-.+. .+  .|.++|+.+++...... ..
T Consensus       274 --------------------------------~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g  320 (419)
T PRK04043        274 --------------------------------NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HG  320 (419)
T ss_pred             --------------------------------cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CC
Confidence                                            12222234579999987666553 33  58888888776533222 11


Q ss_pred             CcEEEEEeCCCC-EEE-EEeCC--------CcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          278 DAINSVVAGFDS-LVF-TGSAD--------GTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       278 ~~v~~i~~~~~~-~l~-s~~~d--------g~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      ..  ...|+||| .|+ +...+        ..|.+.|+..+..       +.+... .......|+|||+.|+..+.+|
T Consensus       321 ~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-------~~LT~~-~~~~~p~~SPDG~~I~f~~~~~  389 (419)
T PRK04043        321 KN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-------RRLTAN-GVNQFPRFSSDGGSIMFIKYLG  389 (419)
T ss_pred             Cc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-------EECCCC-CCcCCeEECCCCCEEEEEEccC
Confidence            11  24899998 444 33332        3677777754321       112221 1223588999999887766543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.37  E-value=8.5e-07  Score=76.14  Aligned_cols=126  Identities=16%  Similarity=0.252  Sum_probs=91.7

Q ss_pred             cccEEEEeec--CCEEEEecCCCcEEEEeCCCc------ceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCC
Q 043707          123 EGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE------FSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRK  193 (347)
Q Consensus       123 ~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~~~------~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~  193 (347)
                      ++.|+++.+.  +.++..|+.+|.|.+.|+...      ....--|...|++++.-. ++++|++.+.+|+|++||++.-
T Consensus       252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~  331 (425)
T KOG2695|consen  252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT  331 (425)
T ss_pred             chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhh
Confidence            3457777664  679999999999999996533      223345889999998877 7889999999999999999866


Q ss_pred             CCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEE--EEcCCCCEEEEEeCCCcEEEEeCCCCEEEE
Q 043707          194 NPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCL--SLNAEQGLLYSGSWDKTLKVWRISDCKCLE  271 (347)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l--~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~  271 (347)
                      +.....                             ....+|...-.-+  -.++....++++++|...+||.++.+..+.
T Consensus       332 K~~~~V-----------------------------~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~  382 (425)
T KOG2695|consen  332 KCKKSV-----------------------------MQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC  382 (425)
T ss_pred             hcccce-----------------------------eeeecccccccccccccccccceEEEccCeeEEEEEecccCceee
Confidence            532111                             1112343332222  235567788899999999999999999998


Q ss_pred             EEecCC
Q 043707          272 SINAHD  277 (347)
Q Consensus       272 ~~~~h~  277 (347)
                      +++...
T Consensus       383 tipf~~  388 (425)
T KOG2695|consen  383 TIPFPY  388 (425)
T ss_pred             ccCCCC
Confidence            887543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.37  E-value=4.5e-05  Score=72.58  Aligned_cols=139  Identities=15%  Similarity=0.193  Sum_probs=97.6

Q ss_pred             cCCEEEEecCCCcEEEEeCCC--cceeeecCCCCeeEEEEeCC-----CCEEEEEeCCCcEEEEecCCCCCceeeeeccc
Q 043707          132 SGDLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIITGD-----SNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSL  204 (347)
Q Consensus       132 ~~~~l~tg~~dg~I~vwd~~~--~~~~~~~h~~~V~~l~~sp~-----~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~  204 (347)
                      .|+++++|+.||+|.|-.+..  ....+ ....++.+|+++|+     .+++++|+..| +.++.-+--...        
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk--------  151 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK--------  151 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCccceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc--------
Confidence            378999999999999987443  33333 34578999999998     46799999998 766643211000        


Q ss_pred             ccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCc-----
Q 043707          205 PTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDA-----  279 (347)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~-----  279 (347)
                                            .........++|.++.|.  |++++=++.+| |+|||+.+.+.+..++.....     
T Consensus       152 ----------------------~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~  206 (846)
T KOG2066|consen  152 ----------------------DSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPEL  206 (846)
T ss_pred             ----------------------cceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCccc
Confidence                                  000112367889999997  57788777666 899999998888777644333     


Q ss_pred             -EEEEEeCCCCEEEEEeCCCcEEEEEcc
Q 043707          280 -INSVVAGFDSLVFTGSADGTVKVWRRE  306 (347)
Q Consensus       280 -v~~i~~~~~~~l~s~~~dg~I~vwd~~  306 (347)
                       -..+.|.++..|+.|-.| +|+|..++
T Consensus       207 fpphl~W~~~~~LVIGW~d-~v~i~~I~  233 (846)
T KOG2066|consen  207 FPPHLHWQDEDRLVIGWGD-SVKICSIK  233 (846)
T ss_pred             CCCceEecCCCeEEEecCC-eEEEEEEe
Confidence             345678777777777554 78888887

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.36  E-value=4.1e-05  Score=78.81  Aligned_cols=170  Identities=10%  Similarity=0.114  Sum_probs=101.5

Q ss_pred             EEee-cCCEEEEecCCCcEEEEeCCCc-ceeeec---------C------CCCeeEEEEeCCCCEE-EEEeCCCcEEEEe
Q 043707          128 SLAA-SGDLLYTGSDSKNIRVWKNLKE-FSGFKS---------N------SGLVKAIIITGDSNKI-FTGHQDGKIRIWK  189 (347)
Q Consensus       128 ~l~~-~~~~l~tg~~dg~I~vwd~~~~-~~~~~~---------h------~~~V~~l~~sp~~~~l-~s~~~Dg~I~vwd  189 (347)
                      ++++ ++.++++...++.|++||.... ...+.+         +      -.....|+++|+++.| ++-..++.|++||
T Consensus       689 a~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D  768 (1057)
T PLN02919        689 CFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALD  768 (1057)
T ss_pred             EEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            4444 3557777788899999985432 212211         1      1235679999998854 4556678999999


Q ss_pred             cCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEE
Q 043707          190 VSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC  269 (347)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~  269 (347)
                      +.++.....  ....+.....         .....................++++++|.++++-..+++|++||..++..
T Consensus       769 ~~tg~~~~~--~gg~~~~~~~---------l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v  837 (1057)
T PLN02919        769 LKTGGSRLL--AGGDPTFSDN---------LFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRV  837 (1057)
T ss_pred             CCCCcEEEE--EecccccCcc---------cccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeE
Confidence            987642111  1000000000         00000000000000112345789999999888888899999999987765


Q ss_pred             EEEEe-------------cCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccC
Q 043707          270 LESIN-------------AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQ  308 (347)
Q Consensus       270 ~~~~~-------------~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~  308 (347)
                      .....             +.-.....|+++++| ++++-+.++.|++||+++.
T Consensus       838 ~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~  890 (1057)
T PLN02919        838 TTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG  890 (1057)
T ss_pred             EEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence            43321             111246788999888 6667778999999999754

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.35  E-value=0.00027  Score=64.08  Aligned_cols=158  Identities=10%  Similarity=0.229  Sum_probs=98.8

Q ss_pred             cEEEEe--ecCCEEEEe-cCCCcEEEEeCCCc---c---eeee-cCCCCeeEEEEeCCCCEEEEEe-CCCcEEEEecCC-
Q 043707          125 HIYSLA--ASGDLLYTG-SDSKNIRVWKNLKE---F---SGFK-SNSGLVKAIIITGDSNKIFTGH-QDGKIRIWKVSR-  192 (347)
Q Consensus       125 ~V~~l~--~~~~~l~tg-~~dg~I~vwd~~~~---~---~~~~-~h~~~V~~l~~sp~~~~l~s~~-~Dg~I~vwd~~~-  192 (347)
                      +..++.  ++++++++. -....|++|+....   +   ..+. .....-..++|+|++++++... .+++|.++++.. 
T Consensus       145 h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~  224 (345)
T PF10282_consen  145 HPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS  224 (345)
T ss_dssp             CEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred             cceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc
Confidence            455554  567766665 33347888885432   2   1222 2334678999999998876554 678899999983 


Q ss_pred             -CCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeCC--CC-
Q 043707          193 -KNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRIS--DC-  267 (347)
Q Consensus       193 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~vwdl~--~~-  267 (347)
                       +.......+...+..                        .........|.++|++++|+++.. +..|.+|++.  ++ 
T Consensus       225 ~g~~~~~~~~~~~~~~------------------------~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~  280 (345)
T PF10282_consen  225 DGSLTEIQTISTLPEG------------------------FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGT  280 (345)
T ss_dssp             TTEEEEEEEEESCETT------------------------SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTT
T ss_pred             CCceeEEEEeeecccc------------------------ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCc
Confidence             322222222222110                        012236788999999999888775 6789999993  23 


Q ss_pred             -EEEEEEecCCCcEEEEEeCCCC-EEEEE-eCCCcEEEEEcc
Q 043707          268 -KCLESINAHDDAINSVVAGFDS-LVFTG-SADGTVKVWRRE  306 (347)
Q Consensus       268 -~~~~~~~~h~~~v~~i~~~~~~-~l~s~-~~dg~I~vwd~~  306 (347)
                       +.+..+.........++++|++ +|+++ -.++.|.+|++.
T Consensus       281 l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  281 LTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             EEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             eEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence             4455555555568899999998 55554 478899999886

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.34  E-value=0.00015  Score=74.72  Aligned_cols=199  Identities=14%  Similarity=0.140  Sum_probs=112.5

Q ss_pred             EEeecCCEEEEe-cCCCcEEEEeCCCc-ceeeecC-----------------CCCeeEEEEeC-CCCEEEEEeCCCcEEE
Q 043707          128 SLAASGDLLYTG-SDSKNIRVWKNLKE-FSGFKSN-----------------SGLVKAIIITG-DSNKIFTGHQDGKIRI  187 (347)
Q Consensus       128 ~l~~~~~~l~tg-~~dg~I~vwd~~~~-~~~~~~h-----------------~~~V~~l~~sp-~~~~l~s~~~Dg~I~v  187 (347)
                      ++..+++.|+.+ ..++.|+++|.... +..+.+-                 -..-.+++++| ++..+++...++.|++
T Consensus       630 avd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v  709 (1057)
T PLN02919        630 AYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWE  709 (1057)
T ss_pred             EEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEE
Confidence            344456655444 44567888885432 3222110                 01246899999 5666777778899999


Q ss_pred             EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEE-EEeCCCcEEEEeCCC
Q 043707          188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLY-SGSWDKTLKVWRISD  266 (347)
Q Consensus       188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg~i~vwdl~~  266 (347)
                      ||..++........+...        ..+          ..............|+++|++..|+ +-..++.|++||+.+
T Consensus       710 ~d~~~g~v~~~~G~G~~~--------~~~----------g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t  771 (1057)
T PLN02919        710 YNISDGVTRVFSGDGYER--------NLN----------GSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKT  771 (1057)
T ss_pred             EECCCCeEEEEecCCccc--------cCC----------CCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence            998776421100000000        000          0000001223467799999988555 455578999999987


Q ss_pred             CEEEEEE-------------ecC--------CCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeeh-------
Q 043707          267 CKCLESI-------------NAH--------DDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLA-------  317 (347)
Q Consensus       267 ~~~~~~~-------------~~h--------~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~-------  317 (347)
                      +......             -.+        -.....+++.++| ++++-..+++|++||.......  ...-       
T Consensus       772 g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~--tiaG~G~~G~~  849 (1057)
T PLN02919        772 GGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT--TLAGTGKAGFK  849 (1057)
T ss_pred             CcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE--EEeccCCcCCC
Confidence            6532111             000        1123578888888 6667778999999998643210  0000       


Q ss_pred             --hhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          318 --QVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       318 --~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                        ....+.-.....|+++++|+++++-+.++
T Consensus       850 dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn  880 (1057)
T PLN02919        850 DGKALKAQLSEPAGLALGENGRLFVADTNNS  880 (1057)
T ss_pred             CCcccccccCCceEEEEeCCCCEEEEECCCC
Confidence              01122234678999999999777765543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.33  E-value=3.1e-06  Score=71.85  Aligned_cols=162  Identities=14%  Similarity=0.222  Sum_probs=96.2

Q ss_pred             cCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCe
Q 043707          159 SNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAV  238 (347)
Q Consensus       159 ~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  238 (347)
                      .|.-.|.++.|..+.+.++++. |=.|-+|+++-.......                     ++++-..   ...-..-|
T Consensus       170 aH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnI---------------------VDiKP~n---meeLteVI  224 (460)
T COG5170         170 AHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNI---------------------VDIKPHN---MEELTEVI  224 (460)
T ss_pred             cceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEE---------------------EeccCcc---HHHHHHHH
Confidence            4566688889988877777664 678999998754322111                     1111000   00122347


Q ss_pred             eEEEEcCC-CCEEEEEeCCCcEEEEeCCCCEE------EEE----------EecCCCcEEEEEeCCCCEEEEEeCCCcEE
Q 043707          239 SCLSLNAE-QGLLYSGSWDKTLKVWRISDCKC------LES----------INAHDDAINSVVAGFDSLVFTGSADGTVK  301 (347)
Q Consensus       239 ~~l~~~~~-~~~l~s~s~dg~i~vwdl~~~~~------~~~----------~~~h~~~v~~i~~~~~~~l~s~~~dg~I~  301 (347)
                      ++..|+|. ...+.-.+..|.|++-|+|+...      +..          |..-...|..+.|++.|.++.+-.--+|+
T Consensus       225 tSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvk  304 (460)
T COG5170         225 TSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVK  304 (460)
T ss_pred             hhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEE
Confidence            77889985 34555566689999999985321      111          11123467888999999555555667999


Q ss_pred             EEEcccCCccceeeehhh-----hhc--cCCcE---EEEEEccCCCEEEEecCC
Q 043707          302 VWRRELQGKGTKHFLAQV-----LLK--QENAI---TALAVNQESAVVYCGSSD  345 (347)
Q Consensus       302 vwd~~~~~~~~~~~~~~~-----~~~--h~~~V---~~l~~~p~~~~l~sgs~D  345 (347)
                      +||.+......+..+...     +..  -...|   ..+.|+-|.+.+.+|+..
T Consensus       305 iwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~  358 (460)
T COG5170         305 IWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYS  358 (460)
T ss_pred             EEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccc
Confidence            999987665322221111     110  11233   357788888888888754

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.33  E-value=7.9e-06  Score=78.50  Aligned_cols=175  Identities=13%  Similarity=0.139  Sum_probs=123.1

Q ss_pred             CCEEEEecCCCcEEEEeCCCcceeeecCCC--CeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccce
Q 043707          133 GDLLYTGSDSKNIRVWKNLKEFSGFKSNSG--LVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDY  210 (347)
Q Consensus       133 ~~~l~tg~~dg~I~vwd~~~~~~~~~~h~~--~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~  210 (347)
                      +..++-|+-...+..+|..+....-..+-+  .|.-+  ..+++.+++|...|+|.+-|.++-+......          
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~----------  214 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIM--RYNNRNLFCGDTRGTVFLRDPNSFETIHTFD----------  214 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEE--EecCcEEEeecccceEEeecCCcCceeeeee----------
Confidence            556777777777777886654433333333  34444  4477899999999999999998876433322          


Q ss_pred             EEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC---------CCcEEEEeCCCCEEEEEEecCCCcEE
Q 043707          211 VKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW---------DKTLKVWRISDCKCLESINAHDDAIN  281 (347)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---------dg~i~vwdl~~~~~~~~~~~h~~~v~  281 (347)
                                            .|.+.|..+.  -.|++|++++.         |.-|+|||+|..+.+..+..+.++ .
T Consensus       215 ----------------------aHs~siSDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~  269 (1118)
T KOG1275|consen  215 ----------------------AHSGSISDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-Q  269 (1118)
T ss_pred             ----------------------ccccceeeee--ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-h
Confidence                                  4888887654  46889999875         555899999999988888777665 5


Q ss_pred             EEEeCCC--CEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          282 SVVAGFD--SLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       282 ~i~~~~~--~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      -+.|+|.  ..+++++.-|+..+-|........  .-..........+.++++++++..|+.|-.+|
T Consensus       270 flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~--~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g  334 (1118)
T KOG1275|consen  270 FLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP--AGVKMVNPNGSGISAFDISSNGDALAFGDHEG  334 (1118)
T ss_pred             hhhhcccccceEEEEecccceeeccccccCCCc--cceeEEccCCCcceeEEecCCCceEEEecccC
Confidence            5678886  388899999999999954333210  01111222244599999999999999998877

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.32  E-value=1.4e-05  Score=76.97  Aligned_cols=147  Identities=13%  Similarity=0.204  Sum_probs=110.9

Q ss_pred             cEEEEeecCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeC---------CCcEEEEecCCC
Q 043707          125 HIYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQ---------DGKIRIWKVSRK  193 (347)
Q Consensus       125 ~V~~l~~~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~---------Dg~I~vwd~~~~  193 (347)
                      .|+-+..++++|.+|...|+|.+-|..  +....+..|++.|.++..  .|+.|++|+.         |..|+|||++..
T Consensus       179 ~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm  256 (1118)
T KOG1275|consen  179 GVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMM  256 (1118)
T ss_pred             ceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhh
Confidence            477778889999999999999999954  668899999999988766  5669999985         567899999987


Q ss_pred             CCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEEe---CCCC-E
Q 043707          194 NPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWR---ISDC-K  268 (347)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwd---l~~~-~  268 (347)
                      +......+...|                                 .-+.|+|. ...+++++..|...+-|   +.+. .
T Consensus       257 ral~PI~~~~~P---------------------------------~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~  303 (1118)
T KOG1275|consen  257 RALSPIQFPYGP---------------------------------QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPA  303 (1118)
T ss_pred             hccCCcccccCc---------------------------------hhhhhcccccceEEEEecccceeeccccccCCCcc
Confidence            655444433222                                 23567775 45778888899999999   3332 1


Q ss_pred             EEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcc
Q 043707          269 CLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRE  306 (347)
Q Consensus       269 ~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~  306 (347)
                      -+..+......+..+.+++.+ .++.|..+|.|.+|.-+
T Consensus       304 ~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  304 GVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR  342 (1118)
T ss_pred             ceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence            233344445668899999887 89999999999999743

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.30  E-value=0.00053  Score=58.05  Aligned_cols=192  Identities=17%  Similarity=0.227  Sum_probs=109.2

Q ss_pred             EEeecCCEEEEecCCCcEEEEeCCCcceee-------ecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeee
Q 043707          128 SLAASGDLLYTGSDSKNIRVWKNLKEFSGF-------KSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKR  200 (347)
Q Consensus       128 ~l~~~~~~l~tg~~dg~I~vwd~~~~~~~~-------~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~  200 (347)
                      ++..+|++||.-- |..|.|-.........       +.....=.-++|+||+..||.+...|+|+++|+.....- ...
T Consensus         4 ~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~   81 (282)
T PF15492_consen    4 ALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIP   81 (282)
T ss_pred             eecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcC
Confidence            3445666665543 4566666433222211       111223457999999999999999999999999864321 111


Q ss_pred             ecc-cccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC------CCEEEEEeCCCcEEEEeCC-----CCE
Q 043707          201 VGS-LPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE------QGLLYSGSWDKTLKVWRIS-----DCK  268 (347)
Q Consensus       201 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~------~~~l~s~s~dg~i~vwdl~-----~~~  268 (347)
                      ... .+.                          .-...|..|.|-+-      ...|++-..+|.++=|-+.     ..+
T Consensus        82 p~~~~~~--------------------------d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~  135 (282)
T PF15492_consen   82 PAMSFPG--------------------------DLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQ  135 (282)
T ss_pred             cccccCC--------------------------ccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcce
Confidence            100 000                          12344555555432      2346666677777766652     223


Q ss_pred             EEEEEe--c-CCCcEEEEEeCCCC-EEEEE-eCCC----------cEEEEEcccCCc----------cc-----eeeehh
Q 043707          269 CLESIN--A-HDDAINSVVAGFDS-LVFTG-SADG----------TVKVWRRELQGK----------GT-----KHFLAQ  318 (347)
Q Consensus       269 ~~~~~~--~-h~~~v~~i~~~~~~-~l~s~-~~dg----------~I~vwd~~~~~~----------~~-----~~~~~~  318 (347)
                      ...+|.  . +...|.++.++|.. +|+.| +...          -+..|.+-.+..          ..     ......
T Consensus       136 e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~  215 (282)
T PF15492_consen  136 ENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLR  215 (282)
T ss_pred             eeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceee
Confidence            444443  2 46789999999986 44444 3332          366776643211          00     000111


Q ss_pred             hh--------hccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          319 VL--------LKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       319 ~~--------~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      .+        ......|..|..+|||..||+...+|.
T Consensus       216 ~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~  252 (282)
T PF15492_consen  216 IPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGS  252 (282)
T ss_pred             ccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCe
Confidence            11        112567999999999999999988873

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.24  E-value=0.00027  Score=65.62  Aligned_cols=140  Identities=7%  Similarity=-0.010  Sum_probs=83.2

Q ss_pred             CCeeEEEEeCCCCE-EEEEeCC---CcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCC
Q 043707          162 GLVKAIIITGDSNK-IFTGHQD---GKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA  237 (347)
Q Consensus       162 ~~V~~l~~sp~~~~-l~s~~~D---g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  237 (347)
                      +.+..-.|+|+|+. ++..+.+   ..|.++|+.+++.....                                 ...+.
T Consensus       188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt---------------------------------~~~g~  234 (419)
T PRK04043        188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA---------------------------------SSQGM  234 (419)
T ss_pred             CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe---------------------------------cCCCc
Confidence            37788999999984 5544433   45888888776532211                                 13344


Q ss_pred             eeEEEEcCCCCEEEE-EeCC--CcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC--EEEEEeCCC--cEEEEEcccCCc
Q 043707          238 VSCLSLNAEQGLLYS-GSWD--KTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADG--TVKVWRRELQGK  310 (347)
Q Consensus       238 V~~l~~~~~~~~l~s-~s~d--g~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg--~I~vwd~~~~~~  310 (347)
                      .....|+|||+.|+. .+.+  ..|.++|+..++. ..+..+........|+|||  ++++....+  .|.+.|+..+..
T Consensus       235 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~  313 (419)
T PRK04043        235 LVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV  313 (419)
T ss_pred             EEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence            556789999976654 4333  4588888877753 3444344333445799998  444444444  566666653321


Q ss_pred             cceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707          311 GTKHFLAQVLLKQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       311 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                        . .+.  ..+.  .  ...|+|+|+.|+..+.
T Consensus       314 --~-rlt--~~g~--~--~~~~SPDG~~Ia~~~~  338 (419)
T PRK04043        314 --E-QVV--FHGK--N--NSSVSTYKNYIVYSSR  338 (419)
T ss_pred             --E-eCc--cCCC--c--CceECCCCCEEEEEEc
Confidence              1 111  1111  1  2489999998877654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.22  E-value=0.0019  Score=58.33  Aligned_cols=170  Identities=13%  Similarity=0.109  Sum_probs=111.3

Q ss_pred             EeCCCCEEEEEeCCCcEEEEecCCCCCceeeee-c-----cccc--------------ccceEEeccCCCeEEEEeecce
Q 043707          169 ITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRV-G-----SLPT--------------FKDYVKSSVNPKNYVEVRRNRN  228 (347)
Q Consensus       169 ~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~-~-----~~~~--------------~~~~~~~~~~~~~~~~~~~~~~  228 (347)
                      .+.||+.|+-. ..|.|.++|-.+.+......- .     ..+.              ..+++.....++.++.-.....
T Consensus       274 ~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~  352 (668)
T COG4946         274 ANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGY  352 (668)
T ss_pred             cCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCe
Confidence            34577665543 457899999887653221110 0     0000              0111222222223333333334


Q ss_pred             eeeeecCCCeeEEEEcCCCCEEEEEeCCC-cEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcc
Q 043707          229 VLKIRHYDAVSCLSLNAEQGLLYSGSWDK-TLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRE  306 (347)
Q Consensus       229 ~~~~~h~~~V~~l~~~~~~~~l~s~s~dg-~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~  306 (347)
                      .+.++|...|.-..+..+++-++.|..|| .+-|+|.++++. +.+...-+.|.++..+++| +++.+.....|.+.|+.
T Consensus       353 ~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid  431 (668)
T COG4946         353 SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID  431 (668)
T ss_pred             eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence            45667888899888988888999999999 899999987754 4455566789999999998 67788788888888998


Q ss_pred             cCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          307 LQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       307 ~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      ++..      ...-....+-|+.++|+|++++||-+--+|
T Consensus       432 ngnv------~~idkS~~~lItdf~~~~nsr~iAYafP~g  465 (668)
T COG4946         432 NGNV------RLIDKSEYGLITDFDWHPNSRWIAYAFPEG  465 (668)
T ss_pred             CCCe------eEecccccceeEEEEEcCCceeEEEecCcc
Confidence            6532      111122356799999999999999775544

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.21  E-value=2.6e-05  Score=71.22  Aligned_cols=128  Identities=13%  Similarity=0.207  Sum_probs=89.2

Q ss_pred             cccEEEEeec--CC--EEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEeCC---CcEEEEecCCCCC
Q 043707          123 EGHIYSLAAS--GD--LLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQD---GKIRIWKVSRKNP  195 (347)
Q Consensus       123 ~~~V~~l~~~--~~--~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D---g~I~vwd~~~~~~  195 (347)
                      +|+|+++.|+  ++  -++-|-.=-++-|+|..... .+.--.++=.++-|+|.|++|+.++.+   |.|-|||+.+.+.
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~-v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~  348 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP-VFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKL  348 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE-eEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhh
Confidence            6789999986  43  34456667788999865332 223335677889999999999998865   7899999998654


Q ss_pred             ceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC------CCcEEEEeCCCCEE
Q 043707          196 SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW------DKTLKVWRISDCKC  269 (347)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~------dg~i~vwdl~~~~~  269 (347)
                      +....                                  ...-+.+.|+|||.+++++..      |+.++||+. +|..
T Consensus       349 i~~~~----------------------------------a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~  393 (566)
T KOG2315|consen  349 IAKFK----------------------------------AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSL  393 (566)
T ss_pred             ccccc----------------------------------cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCce
Confidence            33322                                  223456899999999999875      788999998 4665


Q ss_pred             EEEEecCCCcEEEEEeCC
Q 043707          270 LESINAHDDAINSVVAGF  287 (347)
Q Consensus       270 ~~~~~~h~~~v~~i~~~~  287 (347)
                      +....... ....+.|-|
T Consensus       394 l~~~~f~s-EL~qv~W~P  410 (566)
T KOG2315|consen  394 LHEKMFKS-ELLQVEWRP  410 (566)
T ss_pred             eehhhhhH-hHhheeeee
Confidence            54332221 355666654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.19  E-value=0.0017  Score=55.75  Aligned_cols=179  Identities=11%  Similarity=0.076  Sum_probs=106.2

Q ss_pred             cCCEEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEe-CCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccce
Q 043707          132 SGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIIT-GDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDY  210 (347)
Q Consensus       132 ~~~~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~s-p~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~  210 (347)
                      .+.++++--..+.|+.|+............. ...+++. +++ .|+.+..++ +.++|..+++...........     
T Consensus        11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~-----   82 (246)
T PF08450_consen   11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPDGG-----   82 (246)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEEEEESSS-EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEETTC-----
T ss_pred             CCEEEEEEcCCCEEEEEECCCCeEEEEecCC-CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccCCC-----
Confidence            4557777777899999997655443322223 7788888 564 666666554 455588776432222210000     


Q ss_pred             EEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCC--------CcEEEEeCCCCEEEEEEecCCCcEEE
Q 043707          211 VKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWD--------KTLKVWRISDCKCLESINAHDDAINS  282 (347)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d--------g~i~vwdl~~~~~~~~~~~h~~~v~~  282 (347)
                                            ......+.+++.++|++.++....        |.|..++.. ++...... .-...+.
T Consensus        83 ----------------------~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNG  138 (246)
T PF08450_consen   83 ----------------------VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNG  138 (246)
T ss_dssp             ----------------------SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEE
T ss_pred             ----------------------cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-Ccccccc
Confidence                                  023457789999999977776643        557777776 55433333 3456789


Q ss_pred             EEeCCCC--EEEEEeCCCcEEEEEcccCCc-cceeeehhhhhccCCcEEEEEEccCCCEEEEe
Q 043707          283 VVAGFDS--LVFTGSADGTVKVWRRELQGK-GTKHFLAQVLLKQENAITALAVNQESAVVYCG  342 (347)
Q Consensus       283 i~~~~~~--~l~s~~~dg~I~vwd~~~~~~-~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sg  342 (347)
                      |+|+|++  ++++-+..+.|..+++..... .........+.......-.+++..+|++.++.
T Consensus       139 i~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~  201 (246)
T PF08450_consen  139 IAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVAD  201 (246)
T ss_dssp             EEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEE
T ss_pred             eEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEE
Confidence            9999998  445667888999999864332 11111122222222347788998888766653

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.18  E-value=0.00039  Score=58.80  Aligned_cols=157  Identities=18%  Similarity=0.218  Sum_probs=96.2

Q ss_pred             EEeecCCEEEEecCCCcEEEEeCC-Ccceeeec-------CCCCeeEEEEeCCC------CEEEEEeCCCcEEEEecCCC
Q 043707          128 SLAASGDLLYTGSDSKNIRVWKNL-KEFSGFKS-------NSGLVKAIIITGDS------NKIFTGHQDGKIRIWKVSRK  193 (347)
Q Consensus       128 ~l~~~~~~l~tg~~dg~I~vwd~~-~~~~~~~~-------h~~~V~~l~~sp~~------~~l~s~~~Dg~I~vwd~~~~  193 (347)
                      ++++++.+||.+...|+|+++|+. ..+..+..       -..+|-.+.|.+..      ..|+.-..+|.++-|-+..+
T Consensus        50 ~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~g  129 (282)
T PF15492_consen   50 AWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVG  129 (282)
T ss_pred             EECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcc
Confidence            445667789999999999999954 22222221       23467777775521      24666667777777765432


Q ss_pred             CCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC----CC-------cEEEE
Q 043707          194 NPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW----DK-------TLKVW  262 (347)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~----dg-------~i~vw  262 (347)
                      ..........                        -.....+...|.++.++|..++|++|+.    |+       -+..|
T Consensus       130 t~q~y~e~hs------------------------fsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaW  185 (282)
T PF15492_consen  130 TNQGYQENHS------------------------FSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAW  185 (282)
T ss_pred             cCCcceeeEE------------------------EEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEE
Confidence            1111110000                        0001125678999999998888887764    11       25667


Q ss_pred             eCCCCEE-----------------------EEEE------ecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccC
Q 043707          263 RISDCKC-----------------------LESI------NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQ  308 (347)
Q Consensus       263 dl~~~~~-----------------------~~~~------~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~  308 (347)
                      .+-++.+                       +..+      ...+..|..|..+||+ +||+...+|.|.+|++...
T Consensus       186 RiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL  261 (282)
T PF15492_consen  186 RILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL  261 (282)
T ss_pred             EEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence            6532210                       0011      1235678999999998 8999999999999999743

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.17  E-value=8.2e-06  Score=76.49  Aligned_cols=128  Identities=18%  Similarity=0.192  Sum_probs=89.2

Q ss_pred             CCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeE
Q 043707          161 SGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSC  240 (347)
Q Consensus       161 ~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  240 (347)
                      .....|+.|+.+..+|++|+.||.++|..+.+........-  +....               .-.-...+.+|...|..
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g--laa~s---------------nLsmNQtLeGH~~sV~v   76 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG--LAAAS---------------NLSMNQTLEGHNASVMV   76 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc--ccccc---------------ccchhhhhccCcceEEE
Confidence            45688999999888999999999999999887643221111  00000               00112234479999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEE--ecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEc
Q 043707          241 LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI--NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRR  305 (347)
Q Consensus       241 l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~--~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~  305 (347)
                      +.|+.+.+.|-+...+|.|.||-+-.+.-...+  ...++.|.++.|.-|| .+...-.||.|.|=.+
T Consensus        77 vTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv  144 (1189)
T KOG2041|consen   77 VTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV  144 (1189)
T ss_pred             EEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence            999999999999999999999998776533322  2245667888888777 6666666666654444

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.17  E-value=2.6e-05  Score=71.18  Aligned_cols=137  Identities=13%  Similarity=0.136  Sum_probs=94.9

Q ss_pred             eeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEE
Q 043707          164 VKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSL  243 (347)
Q Consensus       164 V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  243 (347)
                      -+-+.|+|-|.||+|-+..| |.+|--.+-......                                 .|. .|.-+.|
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF---------------------------------~Hp-~Vq~idf  257 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF---------------------------------YHP-GVQFIDF  257 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc---------------------------------cCC-Cceeeec
Confidence            45689999999999999876 678965443221111                                 143 4788999


Q ss_pred             cCCCCEEEEEeC-----------CCcEEEEeCCCCEEEEEEecCCC--cEEE-EEeCCCCEEEEEeCCCcEEEEEcccCC
Q 043707          244 NAEQGLLYSGSW-----------DKTLKVWRISDCKCLESINAHDD--AINS-VVAGFDSLVFTGSADGTVKVWRRELQG  309 (347)
Q Consensus       244 ~~~~~~l~s~s~-----------dg~i~vwdl~~~~~~~~~~~h~~--~v~~-i~~~~~~~l~s~~~dg~I~vwd~~~~~  309 (347)
                      +|..++|++-+.           ...+.|||+++|...+.|....+  .+.- ..|+.|+..++.-....|.||+...- 
T Consensus       258 SP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf-  336 (698)
T KOG2314|consen  258 SPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSF-  336 (698)
T ss_pred             CCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCce-
Confidence            999999998653           25699999999999988876332  3333 47888885444445578999988632 


Q ss_pred             ccceeeehhhhhccCCcEEEEEEccCCCEEEE
Q 043707          310 KGTKHFLAQVLLKQENAITALAVNQESAVVYC  341 (347)
Q Consensus       310 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s  341 (347)
                           .++..-.-.-..|....|+|.+.+||-
T Consensus       337 -----~lld~Kslki~gIr~FswsP~~~llAY  363 (698)
T KOG2314|consen  337 -----MLLDKKSLKISGIRDFSWSPTSNLLAY  363 (698)
T ss_pred             -----eeecccccCCccccCcccCCCcceEEE
Confidence                 222222223457889999999888874

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.09  E-value=3.3e-05  Score=72.47  Aligned_cols=116  Identities=14%  Similarity=0.240  Sum_probs=88.1

Q ss_pred             cEEEEeecCCEEEEecCCCcEEEEeCCCc-cee--eecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeee
Q 043707          125 HIYSLAASGDLLYTGSDSKNIRVWKNLKE-FSG--FKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRV  201 (347)
Q Consensus       125 ~V~~l~~~~~~l~tg~~dg~I~vwd~~~~-~~~--~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~  201 (347)
                      ..+|++..+++++.|+.-|.+++|+.... ...  ..+-.+.+..+.++++..++|.|+..|.|.|+.+....+.....+
T Consensus        37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~  116 (726)
T KOG3621|consen   37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYV  116 (726)
T ss_pred             EEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceee
Confidence            45789999999999999999999984422 222  222445667777888888899999999999998887543322222


Q ss_pred             cccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 043707          202 GSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD  266 (347)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~  266 (347)
                      ....                          ..|...|+|++|++++..+++|...|+|..-.+..
T Consensus       117 t~~d--------------------------~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  117 TPCD--------------------------KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cccc--------------------------ccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            1110                          02788999999999999999999999999988876

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.08  E-value=0.00036  Score=63.99  Aligned_cols=104  Identities=13%  Similarity=0.135  Sum_probs=69.4

Q ss_pred             cCCCeeEEEEcCCCCEEEEEeC---CCcEEEEeCCC----CEEEEEEecCCCcEEEEEeCCCC-EEEE---EeCCCcEEE
Q 043707          234 HYDAVSCLSLNAEQGLLYSGSW---DKTLKVWRISD----CKCLESINAHDDAINSVVAGFDS-LVFT---GSADGTVKV  302 (347)
Q Consensus       234 h~~~V~~l~~~~~~~~l~s~s~---dg~i~vwdl~~----~~~~~~~~~h~~~v~~i~~~~~~-~l~s---~~~dg~I~v  302 (347)
                      -.+.|...+|-|.|+.+++-+.   ..++.+|-+++    .+.+..+..  ...+.+.|+|.| +++.   ++..|.+.+
T Consensus       444 lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F  521 (698)
T KOG2314|consen  444 LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEF  521 (698)
T ss_pred             cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEE
Confidence            3456778899999887766543   46688888763    233444442  456889999998 3332   356899999


Q ss_pred             EEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707          303 WRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       303 wd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                      +|.....      +..+-..-....+.+.|.|.|++++++++-
T Consensus       522 ~D~~~a~------~k~~~~~eh~~at~veWDPtGRYvvT~ss~  558 (698)
T KOG2314|consen  522 YDTDYAD------LKDTASPEHFAATEVEWDPTGRYVVTSSSS  558 (698)
T ss_pred             Eecchhh------hhhccCccccccccceECCCCCEEEEeeeh
Confidence            9997421      111111112356899999999999999863

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.08  E-value=1.4e-06  Score=80.62  Aligned_cols=177  Identities=15%  Similarity=0.257  Sum_probs=114.2

Q ss_pred             CEEEEecCCCcEEEEeCCCc----ceeeecCCCCeeEEEEeC-CCCEEEEEe----CCCcEEEEecCCCCCceeeeeccc
Q 043707          134 DLLYTGSDSKNIRVWKNLKE----FSGFKSNSGLVKAIIITG-DSNKIFTGH----QDGKIRIWKVSRKNPSVHKRVGSL  204 (347)
Q Consensus       134 ~~l~tg~~dg~I~vwd~~~~----~~~~~~h~~~V~~l~~sp-~~~~l~s~~----~Dg~I~vwd~~~~~~~~~~~~~~~  204 (347)
                      -+++.|..+|.|-+-.....    .....+|....++++|++ |.+.||.|-    .|-.+.|||+.++-..+.......
T Consensus        71 cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs  150 (783)
T KOG1008|consen   71 CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFS  150 (783)
T ss_pred             hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccc
Confidence            47899999999999875433    334556778899999999 666777774    345699999988732111111100


Q ss_pred             ccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCE-EEEEEecCCCcEEEE
Q 043707          205 PTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK-CLESINAHDDAINSV  283 (347)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~-~~~~~~~h~~~v~~i  283 (347)
                      .                           +......+++|..+.+++++|...+.++++|+|... ....+  ....+..+
T Consensus       151 ~---------------------------~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~  201 (783)
T KOG1008|consen  151 S---------------------------STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGI  201 (783)
T ss_pred             c---------------------------ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccc
Confidence            0                           123344578888889999999999999999998432 12222  23345556


Q ss_pred             EeCC-CC-EEEEEeCCCcEEEEEc-ccCCccceeeehhhhhccCC----cEEEEEEccCC-CEEEEecCC
Q 043707          284 VAGF-DS-LVFTGSADGTVKVWRR-ELQGKGTKHFLAQVLLKQEN----AITALAVNQES-AVVYCGSSD  345 (347)
Q Consensus       284 ~~~~-~~-~l~s~~~dg~I~vwd~-~~~~~~~~~~~~~~~~~h~~----~V~~l~~~p~~-~~l~sgs~D  345 (347)
                      ...| .+ ++++ ..||.|.+||. +.-+.     +++.+.....    .+..++|+|-. ..|++...|
T Consensus       202 tVdp~~~nY~cs-~~dg~iAiwD~~rnien-----pl~~i~~~~N~~~~~l~~~aycPtrtglla~l~Rd  265 (783)
T KOG1008|consen  202 TVDPFSPNYFCS-NSDGDIAIWDTYRNIEN-----PLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRD  265 (783)
T ss_pred             eecCCCCCceec-cccCceeeccchhhhcc-----HHHHHhhCCCCcccceeeEEeccCCcchhhhhccC
Confidence            6666 33 5554 45999999994 32222     3444433333    49999999964 455555544

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.07  E-value=0.00017  Score=66.24  Aligned_cols=136  Identities=13%  Similarity=0.181  Sum_probs=83.3

Q ss_pred             CCEEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEE
Q 043707          133 GDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVK  212 (347)
Q Consensus       133 ~~~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~  212 (347)
                      ++.++.++.+|.++.||....................  .+..++.++.||.|..+|..+++........          
T Consensus       241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~----------  308 (377)
T TIGR03300       241 GGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDEL----------  308 (377)
T ss_pred             CCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccc----------
Confidence            4567777778888888854332222111111112222  3457788888899999988877532211000          


Q ss_pred             eccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEEE
Q 043707          213 SSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVF  292 (347)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l~  292 (347)
                                           ..........  .+..|++++.+|.++++|.++++.+.+++.+...+..--...++.|+
T Consensus       309 ---------------------~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~  365 (377)
T TIGR03300       309 ---------------------KYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLL  365 (377)
T ss_pred             ---------------------cCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEE
Confidence                                 0011111112  35689999999999999999999999988766543322222256788


Q ss_pred             EEeCCCcEEEE
Q 043707          293 TGSADGTVKVW  303 (347)
Q Consensus       293 s~~~dg~I~vw  303 (347)
                      .++.||.|..|
T Consensus       366 v~~~dG~l~~~  376 (377)
T TIGR03300       366 VQTRDGDLYAF  376 (377)
T ss_pred             EEeCCceEEEe
Confidence            99999999876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.06  E-value=0.00056  Score=62.80  Aligned_cols=202  Identities=13%  Similarity=0.134  Sum_probs=103.7

Q ss_pred             CCEEEEecCCCcEEEEeCCCc--ceeeecCCCCe-----eEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeeccc-
Q 043707          133 GDLLYTGSDSKNIRVWKNLKE--FSGFKSNSGLV-----KAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSL-  204 (347)
Q Consensus       133 ~~~l~tg~~dg~I~vwd~~~~--~~~~~~h~~~V-----~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~-  204 (347)
                      ++.++.+..+|.|+.||....  ...+......+     ...... + ..++.+..+|.+..+|.++++.......... 
T Consensus       145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~  222 (377)
T TIGR03300       145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPK  222 (377)
T ss_pred             CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeeeccccCC
Confidence            456777888899999985432  22222211111     011122 2 3778888899999999988865433221110 


Q ss_pred             --------------ccc-cceEEeccCCCeEEEEee-cceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCE
Q 043707          205 --------------PTF-KDYVKSSVNPKNYVEVRR-NRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK  268 (347)
Q Consensus       205 --------------~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~  268 (347)
                                    |.. ...+........+..+.. .....+...........  ..+..++.++.||.+..+|..+++
T Consensus       223 g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~  300 (377)
T TIGR03300       223 GRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPA--VDDNRLYVTDADGVVVALDRRSGS  300 (377)
T ss_pred             CCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCce--EeCCEEEEECCCCeEEEEECCCCc
Confidence                          000 011111111111111111 11122211111111111  246788888899999999999998


Q ss_pred             EEEEEecCCC-cEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEE-EEEEccCCCEEEEecCCC
Q 043707          269 CLESINAHDD-AINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAIT-ALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       269 ~~~~~~~h~~-~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~-~l~~~p~~~~l~sgs~DG  346 (347)
                      .+-....... ....... .++.|++++.+|.|.++|..+++.      ...+..+...+. ..++. + +.|+.++.||
T Consensus       301 ~~W~~~~~~~~~~ssp~i-~g~~l~~~~~~G~l~~~d~~tG~~------~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG  371 (377)
T TIGR03300       301 ELWKNDELKYRQLTAPAV-VGGYLVVGDFEGYLHWLSREDGSF------VARLKTDGSGIASPPVVV-G-DGLLVQTRDG  371 (377)
T ss_pred             EEEccccccCCccccCEE-ECCEEEEEeCCCEEEEEECCCCCE------EEEEEcCCCccccCCEEE-C-CEEEEEeCCc
Confidence            7765532111 1222222 246889999999999999876542      223333332222 22222 3 4577888887


Q ss_pred             C
Q 043707          347 L  347 (347)
Q Consensus       347 ~  347 (347)
                      .
T Consensus       372 ~  372 (377)
T TIGR03300       372 D  372 (377)
T ss_pred             e
Confidence            3

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.06  E-value=2e-05  Score=72.78  Aligned_cols=73  Identities=14%  Similarity=0.227  Sum_probs=61.2

Q ss_pred             cCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCe
Q 043707          159 SNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAV  238 (347)
Q Consensus       159 ~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  238 (347)
                      .....|.+++++|+...++.|+.||.|++||...+.....                                  ...-..
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~----------------------------------ka~~~P  302 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA----------------------------------KAEFIP  302 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee----------------------------------eecccc
Confidence            4567899999999999999999999999999976632111                                  134457


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 043707          239 SCLSLNAEQGLLYSGSWDKTLKVWRIS  265 (347)
Q Consensus       239 ~~l~~~~~~~~l~s~s~dg~i~vwdl~  265 (347)
                      +.++|||+|.++++|+.-|.+.+||+.
T Consensus       303 ~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  303 TLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             eEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            789999999999999999999999985

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.02  E-value=0.0062  Score=52.29  Aligned_cols=169  Identities=12%  Similarity=0.157  Sum_probs=98.0

Q ss_pred             CCEEEEecCCCcEEEEeCCCc-ceeeec------CCCCeeEEEEeCCCCEEEEEeCC--------CcEEEEecCCCCCce
Q 043707          133 GDLLYTGSDSKNIRVWKNLKE-FSGFKS------NSGLVKAIIITGDSNKIFTGHQD--------GKIRIWKVSRKNPSV  197 (347)
Q Consensus       133 ~~~l~tg~~dg~I~vwd~~~~-~~~~~~------h~~~V~~l~~sp~~~~l~s~~~D--------g~I~vwd~~~~~~~~  197 (347)
                      +..|+.+...+ +.++|.... +..+..      .....+++++.|+|+..++....        |.|..++.. ++...
T Consensus        51 ~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~  128 (246)
T PF08450_consen   51 DGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV  128 (246)
T ss_dssp             TSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE
T ss_pred             CCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE
Confidence            45555555544 555575432 222211      23468899999999877776544        335555544 22110


Q ss_pred             eeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEE-EEeCCCcEEEEeCCC--C-----EE
Q 043707          198 HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLY-SGSWDKTLKVWRISD--C-----KC  269 (347)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg~i~vwdl~~--~-----~~  269 (347)
                        .                               .......+.|+|+|+++.|+ +-+..+.|..+++..  .     +.
T Consensus       129 --~-------------------------------~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~  175 (246)
T PF08450_consen  129 --V-------------------------------ADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRV  175 (246)
T ss_dssp             --E-------------------------------EEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEE
T ss_pred             --E-------------------------------ecCcccccceEECCcchheeecccccceeEEEeccccccceeeeee
Confidence              0                               11334567899999998776 556678899998852  2     11


Q ss_pred             EEEEecCCCcEEEEEeCCCCEEE-EEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEc-cCCCEEEEec
Q 043707          270 LESINAHDDAINSVVAGFDSLVF-TGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVN-QESAVVYCGS  343 (347)
Q Consensus       270 ~~~~~~h~~~v~~i~~~~~~~l~-s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~-p~~~~l~sgs  343 (347)
                      ...+....+..-.+++..+|.|. +....+.|.+++.+  ++     +...+......+++++|. ++.+.|+..+
T Consensus       176 ~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~--G~-----~~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  176 FIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD--GK-----LLREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT--SC-----EEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             EEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC--cc-----EEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            22222222347788998888444 44578899999986  33     333333334489999994 6766666554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.98  E-value=0.0026  Score=57.14  Aligned_cols=108  Identities=8%  Similarity=0.011  Sum_probs=74.7

Q ss_pred             CcEEEEeCCC--cceeeecCCCCeeEEEEeCCCCEEEEEeC----------CCcEEEEecCCCCCceeeeecccccccce
Q 043707          143 KNIRVWKNLK--EFSGFKSNSGLVKAIIITGDSNKIFTGHQ----------DGKIRIWKVSRKNPSVHKRVGSLPTFKDY  210 (347)
Q Consensus       143 g~I~vwd~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~~~----------Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~  210 (347)
                      ++|.+.|...  .+..+..-..+ ..+ ++|+++.|+.+..          +..|.+||..+.+......++..|.+.  
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~--  102 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL--  102 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh--
Confidence            7899998543  23333322222 234 9999998888776          789999999998866555543222110  


Q ss_pred             EEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEe-C-CCcEEEEeCCCCEEEEEEecCC
Q 043707          211 VKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGS-W-DKTLKVWRISDCKCLESINAHD  277 (347)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~-dg~i~vwdl~~~~~~~~~~~h~  277 (347)
                                             .......++++|||++|+... . +..+.|.|+.+++.+.++....
T Consensus       103 -----------------------~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~  148 (352)
T TIGR02658       103 -----------------------VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD  148 (352)
T ss_pred             -----------------------ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC
Confidence                                   122334688999999999876 3 6889999999999999887533

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.96  E-value=0.00076  Score=68.48  Aligned_cols=192  Identities=14%  Similarity=0.135  Sum_probs=113.7

Q ss_pred             cEEEEee--cCCEEEEecC---C---CcEEEEeCCCcce-eeecCCCCeeEEEEeCCCCEEEEEeC---CCcEEEEecCC
Q 043707          125 HIYSLAA--SGDLLYTGSD---S---KNIRVWKNLKEFS-GFKSNSGLVKAIIITGDSNKIFTGHQ---DGKIRIWKVSR  192 (347)
Q Consensus       125 ~V~~l~~--~~~~l~tg~~---d---g~I~vwd~~~~~~-~~~~h~~~V~~l~~sp~~~~l~s~~~---Dg~I~vwd~~~  192 (347)
                      .-..++|  ||.++|+.+.   .   ..||||+-...+. .-..-.+--.+++|.|.|++||+...   ...|.+|.-+.
T Consensus       211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNG  290 (928)
T PF04762_consen  211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNG  290 (928)
T ss_pred             CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCC
Confidence            3345555  6778888764   2   5799998553322 22223344557899999999998864   23455554332


Q ss_pred             CCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEE--E
Q 043707          193 KNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC--L  270 (347)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~--~  270 (347)
                      -+. ....+..                            ......|..|.|++++..|+..-.|. |.+|-..+..-  .
T Consensus       291 Lrh-geF~l~~----------------------------~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLK  340 (928)
T PF04762_consen  291 LRH-GEFTLRF----------------------------DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLK  340 (928)
T ss_pred             cEe-eeEecCC----------------------------CCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEE
Confidence            211 0011000                            02455789999999999999988665 99999887652  2


Q ss_pred             EEEecC-CCcEEEEEeCCCC--EEEEEeCCCcEEEEEccc----CCc---------------cceee-------ehh---
Q 043707          271 ESINAH-DDAINSVVAGFDS--LVFTGSADGTVKVWRREL----QGK---------------GTKHF-------LAQ---  318 (347)
Q Consensus       271 ~~~~~h-~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~----~~~---------------~~~~~-------~~~---  318 (347)
                      +.+... ...+..+.|+|..  .|.....+|.+..++..-    ...               .....       +.-   
T Consensus       341 qei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~  420 (928)
T PF04762_consen  341 QEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSS  420 (928)
T ss_pred             EEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhc
Confidence            223322 2335558999975  566666667765555431    100               00000       000   


Q ss_pred             hhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          319 VLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       319 ~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      .-..-...|.+++|++++..+++-..||
T Consensus       421 ~~l~~~~~v~~vaf~~~~~~~avl~~d~  448 (928)
T PF04762_consen  421 YELELPSPVNDVAFSPSNSRFAVLTSDG  448 (928)
T ss_pred             eEEcCCCCcEEEEEeCCCCeEEEEECCC
Confidence            0012256899999999987787777776

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.86  E-value=2.1e-05  Score=75.52  Aligned_cols=156  Identities=14%  Similarity=0.206  Sum_probs=108.6

Q ss_pred             ceeEeeeeccccEEEEeecC--CEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCC--cEEE
Q 043707          114 GLIGSIVRKEGHIYSLAASG--DLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDG--KIRI  187 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~~~--~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg--~I~v  187 (347)
                      ..+++++.|+..-+|+++++  +.|+.|+..|.|++++..  .......+|..+|+-+.=+-+|..+++.+.-.  -..+
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence            36778888998899999864  599999999999999854  44567789999999999888988777665433  4678


Q ss_pred             EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 043707          188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC  267 (347)
Q Consensus       188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~  267 (347)
                      |++...-...+                                   ....-.++.|+.....-+.|+......|||+.++
T Consensus      1172 W~~~s~~~~~H-----------------------------------sf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~ 1216 (1516)
T KOG1832|consen 1172 WDASSTGGPRH-----------------------------------SFDEDKAVKFSNSLQFRALGTEADDALLYDVQTC 1216 (1516)
T ss_pred             hccccccCccc-----------------------------------cccccceeehhhhHHHHHhcccccceEEEecccC
Confidence            99875321111                                   1234567888876544455555567889999998


Q ss_pred             EEEEEE-ec---CCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccC
Q 043707          268 KCLESI-NA---HDDAINSVVAGFDSLVFTGSADGTVKVWRRELQ  308 (347)
Q Consensus       268 ~~~~~~-~~---h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~  308 (347)
                      .++.++ ..   ..-.-++..|+|+..|+-  .||.  +||++..
T Consensus      1217 ~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--ndGv--LWDvR~~ 1257 (1516)
T KOG1832|consen 1217 SPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--NDGV--LWDVRIP 1257 (1516)
T ss_pred             cHHHHhcCcchhhhhhccccccCCCcceEe--eCce--eeeeccH
Confidence            877663 21   111236778999873332  4553  6999843

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.86  E-value=8.9e-05  Score=69.68  Aligned_cols=114  Identities=17%  Similarity=0.166  Sum_probs=79.8

Q ss_pred             cCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEE-EecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCcc
Q 043707          234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES-INAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG  311 (347)
Q Consensus       234 h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~-~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~  311 (347)
                      +...|.--+++..+.+++.|+.-|.+++|.-..++.+.. ..+..+.+..+..+++. ++|+|+..|.|.|+.+......
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            444455556677789999999999999999655543322 22234445555667766 7788889999999988764432


Q ss_pred             ceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          312 TKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       312 ~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      ........-..|...|++++|++++..|++|...|.
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gk  147 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGK  147 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEeecCCCce
Confidence            222222222347889999999999999999988774

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.85  E-value=0.0017  Score=64.95  Aligned_cols=213  Identities=11%  Similarity=0.046  Sum_probs=121.5

Q ss_pred             ccEEEEee--cCCEEEEecCCCcEEEEeCCCcceeee-cCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeee
Q 043707          124 GHIYSLAA--SGDLLYTGSDSKNIRVWKNLKEFSGFK-SNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKR  200 (347)
Q Consensus       124 ~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~~~~~~~-~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~  200 (347)
                      +.|.++.+  +++-++.+..+|.|.+-|........- .-...|.+++|+||++.++-...++++.+-+-. -.+.....
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~-f~~i~E~~  147 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKD-FEPIAEKP  147 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEecc-ccchhccc
Confidence            46777776  566788888889999988665433333 345689999999999999999888888764321 11111111


Q ss_pred             e-cccccccceEEeccCC-CeEEEEeecceee--e---------eecCCCeeEEEEcCCCCEEEEEe----CC-CcEEEE
Q 043707          201 V-GSLPTFKDYVKSSVNP-KNYVEVRRNRNVL--K---------IRHYDAVSCLSLNAEQGLLYSGS----WD-KTLKVW  262 (347)
Q Consensus       201 ~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~---------~~h~~~V~~l~~~~~~~~l~s~s----~d-g~i~vw  262 (347)
                      . ........++..++.. .+.+....++...  .         +...+.=+.|+|--||.++++..    .+ +.|+||
T Consensus       148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~  227 (1265)
T KOG1920|consen  148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY  227 (1265)
T ss_pred             cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence            1 0011111122222111 1111111111000  0         01122234689999999998832    23 789999


Q ss_pred             eCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEE---eCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCE
Q 043707          263 RISDCKCLESINAHDDAINSVVAGFDS-LVFTG---SADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAV  338 (347)
Q Consensus       263 dl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~---~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~  338 (347)
                      |-+ +..-..-.....--.+++|-|.| ++++-   ..|+.|.+|..+....  . ...-.+......|..++|+.++..
T Consensus       228 drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~h--g-~f~l~~p~de~~ve~L~Wns~sdi  303 (1265)
T KOG1920|consen  228 DRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRH--G-EFVLPFPLDEKEVEELAWNSNSDI  303 (1265)
T ss_pred             ccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccc--c-ccccCCcccccchheeeecCCCCc
Confidence            965 43322222233334678999988 55543   4567899998763222  1 111122233445999999999999


Q ss_pred             EEE
Q 043707          339 VYC  341 (347)
Q Consensus       339 l~s  341 (347)
                      |+.
T Consensus       304 LAv  306 (1265)
T KOG1920|consen  304 LAV  306 (1265)
T ss_pred             eee
Confidence            887

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.84  E-value=0.0011  Score=60.17  Aligned_cols=208  Identities=13%  Similarity=0.080  Sum_probs=115.7

Q ss_pred             EEeecCCEEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCc---------------EEEEecCC
Q 043707          128 SLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGK---------------IRIWKVSR  192 (347)
Q Consensus       128 ~l~~~~~~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~---------------I~vwd~~~  192 (347)
                      ++++.|.+|++.... .|.+|.-...-...+--...|..+.|+|++.+|.+=+..+.               +.+||+.+
T Consensus        39 ~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~s  117 (561)
T COG5354          39 SESPLGTYLFSEHAA-GVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIAS  117 (561)
T ss_pred             eecCcchheehhhcc-ceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccC
Confidence            445566677666654 47788632211222222356889999999999988765544               89999999


Q ss_pred             CCCceeeeeccccccc-ceEEeccCCC----------eEEEEeecceeeee--ecCCCeeEEEEcCCC--CEEEE-----
Q 043707          193 KNPSVHKRVGSLPTFK-DYVKSSVNPK----------NYVEVRRNRNVLKI--RHYDAVSCLSLNAEQ--GLLYS-----  252 (347)
Q Consensus       193 ~~~~~~~~~~~~~~~~-~~~~~~~~~~----------~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~--~~l~s-----  252 (347)
                      +...........+... .++....+..          .+.++...-.....  -....|...+|+|.+  ..|+.     
T Consensus       118 g~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk  197 (561)
T COG5354         118 GMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEK  197 (561)
T ss_pred             ceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEcccc
Confidence            8765444333333111 1222222222          11221110000000  012457788888863  33443     


Q ss_pred             EeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEE----EEe-------CCCcEEEEEcccCCccceeeehhhh
Q 043707          253 GSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF----TGS-------ADGTVKVWRRELQGKGTKHFLAQVL  320 (347)
Q Consensus       253 ~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~----s~~-------~dg~I~vwd~~~~~~~~~~~~~~~~  320 (347)
                      ...++.++||.+..++.+.+....+..-..+.|.+.| +|+    +-.       ....+++++++  ++     -....
T Consensus       198 ~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~--e~-----~i~V~  270 (561)
T COG5354         198 LNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT--ER-----SIPVE  270 (561)
T ss_pred             CCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec--cc-----cccee
Confidence            3558889999998777665543333333567888776 221    111       12467777776  22     12222


Q ss_pred             hccCCcEEEEEEccCCCEEEEec
Q 043707          321 LKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       321 ~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                      ..-.++|.+.+|.|.++.+++.+
T Consensus       271 ~~~~~pVhdf~W~p~S~~F~vi~  293 (561)
T COG5354         271 KDLKDPVHDFTWEPLSSRFAVIS  293 (561)
T ss_pred             ccccccceeeeecccCCceeEEe
Confidence            24577999999999987766654

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=8.4e-05  Score=65.40  Aligned_cols=78  Identities=18%  Similarity=0.184  Sum_probs=68.8

Q ss_pred             eeecCCCeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEccc
Q 043707          231 KIRHYDAVSCLSLNAEQG-LLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRREL  307 (347)
Q Consensus       231 ~~~h~~~V~~l~~~~~~~-~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~  307 (347)
                      ..++...|..++|+|..+ ++..++.+.+|+|.|+++..++..+.++ ..+++++|.-+.  +|++|-..|.|.|||++.
T Consensus       189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~  267 (463)
T KOG1645|consen  189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ  267 (463)
T ss_pred             ccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence            345788899999999765 7889999999999999999999999988 779999998765  999999999999999986


Q ss_pred             CC
Q 043707          308 QG  309 (347)
Q Consensus       308 ~~  309 (347)
                      ..
T Consensus       268 ~~  269 (463)
T KOG1645|consen  268 PE  269 (463)
T ss_pred             CC
Confidence            54

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.80  E-value=0.0018  Score=47.27  Aligned_cols=97  Identities=25%  Similarity=0.332  Sum_probs=67.5

Q ss_pred             eeEEEEcC---C-CCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccce
Q 043707          238 VSCLSLNA---E-QGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTK  313 (347)
Q Consensus       238 V~~l~~~~---~-~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~  313 (347)
                      |++|++..   + .+.|++|+.|..|+||+  ..+.+..+.. .+.|.++.-...+.|+.+-.+|+|-+|+...  +   
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~--R---   73 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRSQ--R---   73 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCcc--e---
Confidence            55666654   3 36899999999999998  3467777764 4567888877778999999999999998741  1   


Q ss_pred             eeehhhhhccCCcEEEEEEcc-C--C-CEEEEecCCC
Q 043707          314 HFLAQVLLKQENAITALAVNQ-E--S-AVVYCGSSDG  346 (347)
Q Consensus       314 ~~~~~~~~~h~~~V~~l~~~p-~--~-~~l~sgs~DG  346 (347)
                        +.+.-.  ...++++++.. +  | ..|++|=.+|
T Consensus        74 --lWRiKS--K~~~~~~~~~D~~gdG~~eLI~GwsnG  106 (111)
T PF14783_consen   74 --LWRIKS--KNQVTSMAFYDINGDGVPELIVGWSNG  106 (111)
T ss_pred             --eeeecc--CCCeEEEEEEcCCCCCceEEEEEecCC
Confidence              122212  23466666554 2  2 4788887776

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=0.00015  Score=67.35  Aligned_cols=94  Identities=20%  Similarity=0.254  Sum_probs=78.6

Q ss_pred             CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEE-EEEeCCCC-EEEEEeCCCcEEEEEcccCCccc
Q 043707          235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAIN-SVVAGFDS-LVFTGSADGTVKVWRRELQGKGT  312 (347)
Q Consensus       235 ~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~-~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~  312 (347)
                      ...|.-+.|+|.-.++|.+..+|.+.+..+. .+.+-++..|...++ +++|.||| +||.|-.||+|++-|.+.+..  
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~--   96 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR--   96 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc--
Confidence            4457789999999999999999999999998 888889987877777 99999999 888999999999999986654  


Q ss_pred             eeeehhhhhccCCcEEEEEEcc
Q 043707          313 KHFLAQVLLKQENAITALAVNQ  334 (347)
Q Consensus       313 ~~~~~~~~~~h~~~V~~l~~~p  334 (347)
                         +..........|.++.|.+
T Consensus        97 ---l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   97 ---LVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             ---eeccccccccchheeeccc
Confidence               3343444567888888864

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.71  E-value=0.0061  Score=51.80  Aligned_cols=147  Identities=20%  Similarity=0.205  Sum_probs=89.3

Q ss_pred             ecCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeeccccccc
Q 043707          131 ASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFK  208 (347)
Q Consensus       131 ~~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~  208 (347)
                      ..++.+++++.++.|+.||..  +.+..+.. .+.+.... ...+..++.+..|+.|+.+|..+++..........+.  
T Consensus        34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~--  109 (238)
T PF13360_consen   34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPP--  109 (238)
T ss_dssp             EETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCT--
T ss_pred             EeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeeccccccc--
Confidence            367778888889999999953  33333333 22222111 2234477777788999999999887544321110000  


Q ss_pred             ceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCc---------
Q 043707          209 DYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDA---------  279 (347)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~---------  279 (347)
                                               .. ....+.....+..++.+..++.|..+|+++|+.+-........         
T Consensus       110 -------------------------~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~  163 (238)
T PF13360_consen  110 -------------------------AG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFS  163 (238)
T ss_dssp             -------------------------CS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEET
T ss_pred             -------------------------cc-cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeec
Confidence                                     00 1111222223778888888999999999999998888764422         


Q ss_pred             --EEEEEeCCCCEEEEEeCCCc-EEEEEcccCC
Q 043707          280 --INSVVAGFDSLVFTGSADGT-VKVWRRELQG  309 (347)
Q Consensus       280 --v~~i~~~~~~~l~s~~~dg~-I~vwd~~~~~  309 (347)
                        ...+.+. ++.++.+..++. +.+ |+.++.
T Consensus       164 ~~~~~~~~~-~~~v~~~~~~g~~~~~-d~~tg~  194 (238)
T PF13360_consen  164 DINGSPVIS-DGRVYVSSGDGRVVAV-DLATGE  194 (238)
T ss_dssp             TEEEEEECC-TTEEEEECCTSSEEEE-ETTTTE
T ss_pred             ccccceEEE-CCEEEEEcCCCeEEEE-ECCCCC
Confidence              1233333 457778887885 555 887654

...

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.66  E-value=0.0019  Score=62.31  Aligned_cols=67  Identities=15%  Similarity=0.215  Sum_probs=55.0

Q ss_pred             EEEEeecCC--EEEEecCCCcEEEEeCCC--cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCC
Q 043707          126 IYSLAASGD--LLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSR  192 (347)
Q Consensus       126 V~~l~~~~~--~l~tg~~dg~I~vwd~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~  192 (347)
                      +++++|...  .|+.|-.-|.+.+|....  .......|..+|..+.|+++|..++|+..-|.|.+|..+.
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence            445666644  788999999999998542  2444567999999999999999999999999999998873

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.64  E-value=0.0027  Score=57.84  Aligned_cols=152  Identities=11%  Similarity=0.084  Sum_probs=100.2

Q ss_pred             cEEEEeCCCc-ceeeecCCCCeeEEEEeCCCCEEEEEe--CCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeE
Q 043707          144 NIRVWKNLKE-FSGFKSNSGLVKAIIITGDSNKIFTGH--QDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNY  220 (347)
Q Consensus       144 ~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s~~--~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (347)
                      +++|+++.+. +.....-.++|...+|.|.++.|++++  .+-.+.++|++..-  ...                     
T Consensus       256 nLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl--~~~---------------------  312 (561)
T COG5354         256 NLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL--RFY---------------------  312 (561)
T ss_pred             eEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccce--EEe---------------------
Confidence            5667775432 333335578999999999888766655  77889999998651  111                     


Q ss_pred             EEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCC---CcEEEEeCCCC-EEEEEEecCCCcEEEEEeCCCC-EEEEE-
Q 043707          221 VEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWD---KTLKVWRISDC-KCLESINAHDDAINSVVAGFDS-LVFTG-  294 (347)
Q Consensus       221 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d---g~i~vwdl~~~-~~~~~~~~h~~~v~~i~~~~~~-~l~s~-  294 (347)
                                  .-...=+.+.|+|.+++++.++-|   |.|-+||.... +++..+.+-..  .-+.|+||+ ++.+. 
T Consensus       313 ------------~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~--s~~~wspd~qF~~~~~  378 (561)
T COG5354         313 ------------FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNT--SYCDWSPDGQFYDTDT  378 (561)
T ss_pred             ------------cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCc--eEeeccCCceEEEecC
Confidence                        122333567899999999987765   66999998654 34446665443  446899998 33332 


Q ss_pred             -e----CCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          295 -S----ADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       295 -~----~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                       +    .|..|+|||+....       ..       ..+.+.|.|.+++..+.+.++
T Consensus       379 ts~k~~~Dn~i~l~~v~g~~-------~f-------el~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         379 TSEKLRVDNSIKLWDVYGAK-------VF-------ELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             CCcccccCcceEEEEecCch-------hh-------hhhhccccCCcccceeeccCC
Confidence             2    47899999996221       11       456777888777766666543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.61  E-value=0.018  Score=50.18  Aligned_cols=184  Identities=16%  Similarity=0.287  Sum_probs=107.9

Q ss_pred             EEeecCCEEEEe-----cCCCcEEEEeCCCc---ceeeecCCCCeeEEEEeCCCCEEEEEeC-------CCcEEEEecCC
Q 043707          128 SLAASGDLLYTG-----SDSKNIRVWKNLKE---FSGFKSNSGLVKAIIITGDSNKIFTGHQ-------DGKIRIWKVSR  192 (347)
Q Consensus       128 ~l~~~~~~l~tg-----~~dg~I~vwd~~~~---~~~~~~h~~~V~~l~~sp~~~~l~s~~~-------Dg~I~vwd~~~  192 (347)
                      +++.+|++|++.     ...|.|-|||....   +..+..|.-.-..+.+.|||+.|+.+-.       .|..++ ++.+
T Consensus        57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL-Nl~t  135 (305)
T PF07433_consen   57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL-NLDT  135 (305)
T ss_pred             EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-Chhh
Confidence            567789988886     34588999997633   4556666666778899999977776631       122222 2222


Q ss_pred             CCCceeeeecccccccceEEeccCCCeEEEEeecceee---e--eecCCCeeEEEEcCCCCEEEEEeCCCc-------EE
Q 043707          193 KNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVL---K--IRHYDAVSCLSLNAEQGLLYSGSWDKT-------LK  260 (347)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~h~~~V~~l~~~~~~~~l~s~s~dg~-------i~  260 (347)
                      .++...                     +++..+.....   +  ..|...|..|++.++|..++..-+.|.       +-
T Consensus       136 M~psL~---------------------~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva  194 (305)
T PF07433_consen  136 MQPSLV---------------------YLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVA  194 (305)
T ss_pred             cCCceE---------------------EEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEE
Confidence            221111                     11111111110   1  126677999999999887776655443       33


Q ss_pred             EEeCCCCEEEEEEe-------cCCCcEEEEEeCCCC-EE-EEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEE
Q 043707          261 VWRISDCKCLESIN-------AHDDAINSVVAGFDS-LV-FTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALA  331 (347)
Q Consensus       261 vwdl~~~~~~~~~~-------~h~~~v~~i~~~~~~-~l-~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~  331 (347)
                      +++  .++.+..+.       .-.+.+-+|+++.++ ++ +|+-..+.+.+||..++.-      +...  .-..+..|+
T Consensus       195 ~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~------~~~~--~l~D~cGva  264 (305)
T PF07433_consen  195 LHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRL------LGSV--PLPDACGVA  264 (305)
T ss_pred             EEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCE------eecc--ccCceeeee
Confidence            333  333333332       234678999999987 44 5566899999999985532      2211  123566677


Q ss_pred             EccCCCEEEEecC
Q 043707          332 VNQESAVVYCGSS  344 (347)
Q Consensus       332 ~~p~~~~l~sgs~  344 (347)
                      -.+++ ++++.+.
T Consensus       265 ~~~~~-f~~ssG~  276 (305)
T PF07433_consen  265 PTDDG-FLVSSGQ  276 (305)
T ss_pred             ecCCc-eEEeCCC
Confidence            66665 6665543

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.60  E-value=0.012  Score=43.10  Aligned_cols=100  Identities=23%  Similarity=0.321  Sum_probs=66.4

Q ss_pred             eeEEEEeC-CC---CEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCee
Q 043707          164 VKAIIITG-DS---NKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVS  239 (347)
Q Consensus       164 V~~l~~sp-~~---~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  239 (347)
                      |.+|++.. ++   +.|+.|+.|..||+|+-+.-  ...                                 +.-.+.|.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~--~~E---------------------------------i~e~~~v~   46 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI--VAE---------------------------------ITETDKVT   46 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE--EEE---------------------------------EecccceE
Confidence            56777655 32   57999999999999986422  111                                 12456677


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeC-CC--C--EEEEEeCCCcEEE
Q 043707          240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAG-FD--S--LVFTGSADGTVKV  302 (347)
Q Consensus       240 ~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~-~~--~--~l~s~~~dg~I~v  302 (347)
                      +|+-... ..++.+-.+|+|-+|+-  .+.+-..+.... +.++.+. .+  |  .|++|-.+|.|-+
T Consensus        47 ~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   47 SLCSLGG-GRFAYALANGTVGVYDR--SQRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             EEEEcCC-CEEEEEecCCEEEEEeC--cceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            7776655 66888889999999985  333334443333 5666543 33  3  7999999998753

>smart00320 WD40 WD40 repeats

Probab=97.60  E-value=0.00014  Score=41.51  Aligned_cols=36  Identities=22%  Similarity=0.593  Sum_probs=28.9

Q ss_pred             ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707          154 FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK  189 (347)
Q Consensus       154 ~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd  189 (347)
                      ...+..|...|.+++|.+++..+++++.|+.+++|+
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345566778888888888878888888888888885

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.59  E-value=0.042  Score=47.99  Aligned_cols=167  Identities=16%  Similarity=0.174  Sum_probs=95.9

Q ss_pred             cCCCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEeC-----CCcEEEEecCCCCCceeeeecccccccceEEec
Q 043707          140 SDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQ-----DGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSS  214 (347)
Q Consensus       140 ~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~-----Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  214 (347)
                      ..+|.+..+-....-+.|.+|      -+|++||++|++.-.     .|.|-|||....-    ..+...+.        
T Consensus        35 ~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~----~ri~E~~s--------   96 (305)
T PF07433_consen   35 CRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGY----RRIGEFPS--------   96 (305)
T ss_pred             cCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCc----EEEeEecC--------
Confidence            344444444333444556666      379999999998754     4789999998332    11111111        


Q ss_pred             cCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEE------------------eCCCcEEEEeCCCCEEEEEEe--
Q 043707          215 VNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSG------------------SWDKTLKVWRISDCKCLESIN--  274 (347)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~------------------s~dg~i~vwdl~~~~~~~~~~--  274 (347)
                                         |.-.-..+.+.||+..|+++                  ..+-.+...|..+|+.+.+..  
T Consensus        97 -------------------~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp  157 (305)
T PF07433_consen   97 -------------------HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP  157 (305)
T ss_pred             -------------------CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC
Confidence                               22223345566666555544                  234446666777888777743  


Q ss_pred             --cCCCcEEEEEeCCCCEEEEEeC-CC-------cEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707          275 --AHDDAINSVVAGFDSLVFTGSA-DG-------TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       275 --~h~~~v~~i~~~~~~~l~s~~~-dg-------~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                        -|+..|..+++.++|.++.+.. .|       -|-+++....-. ...........-..-|-+|++++++.++++.+-
T Consensus       158 ~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~-~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP  236 (305)
T PF07433_consen  158 PDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALR-LLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP  236 (305)
T ss_pred             ccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcce-eccCChHHHHhhCCceEEEEEeCCCCEEEEECC
Confidence              3777899999999986665542 22       233333321100 000111222334567889999999998887764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.58  E-value=0.0041  Score=57.51  Aligned_cols=137  Identities=18%  Similarity=0.176  Sum_probs=77.9

Q ss_pred             CCEEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEE
Q 043707          133 GDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVK  212 (347)
Q Consensus       133 ~~~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~  212 (347)
                      ++.++.++.+|.+..+|........+...+....+..  .+..++.++.+|.|..+|..+++..-.....          
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~----------  323 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQIVWKREYGSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDL----------  323 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCCEEEeecCCCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEccccc----------
Confidence            3445555666666666644322222111111111222  3446777777888888887776532111000          


Q ss_pred             eccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEE-EEeCCCCEE
Q 043707          213 SSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINS-VVAGFDSLV  291 (347)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~-i~~~~~~~l  291 (347)
                                          .+ ........  .+..|+.++.||.+.+.|..+++.+...+.....+.+ ..+ .++.|
T Consensus       324 --------------------~~-~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~~~~l  379 (394)
T PRK11138        324 --------------------LH-RLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-ADDKL  379 (394)
T ss_pred             --------------------CC-CcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-ECCEE
Confidence                                00 01111111  2567888999999999999999998887654333332 122 25689


Q ss_pred             EEEeCCCcEEEEEc
Q 043707          292 FTGSADGTVKVWRR  305 (347)
Q Consensus       292 ~s~~~dg~I~vwd~  305 (347)
                      +.++.||.|..+++
T Consensus       380 ~v~t~~G~l~~~~~  393 (394)
T PRK11138        380 LIQARDGTVYAITR  393 (394)
T ss_pred             EEEeCCceEEEEeC
Confidence            99999999988764

>smart00320 WD40 WD40 repeats

Probab=97.58  E-value=0.00031  Score=39.99  Aligned_cols=38  Identities=29%  Similarity=0.552  Sum_probs=33.2

Q ss_pred             CEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEE
Q 043707          267 CKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWR  304 (347)
Q Consensus       267 ~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd  304 (347)
                      ++++..+..|...|.++.|.+++ ++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45677788899999999999875 899999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.55  E-value=0.0028  Score=60.67  Aligned_cols=145  Identities=12%  Similarity=0.071  Sum_probs=102.6

Q ss_pred             EEeec-CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCC------------CEEEEEeCCCcEEEEecCC
Q 043707          128 SLAAS-GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDS------------NKIFTGHQDGKIRIWKVSR  192 (347)
Q Consensus       128 ~l~~~-~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~------------~~l~s~~~Dg~I~vwd~~~  192 (347)
                      +++|+ +.++|-|+. ..|.+-|..  +.++.+..|...|+.+.|.|..            -.|+++...|.|.+||...
T Consensus        20 A~Dw~~~GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~   98 (1062)
T KOG1912|consen   20 AADWSPSGLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL   98 (1062)
T ss_pred             ccccCccceEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh
Confidence            55665 346666664 478888843  6688888999999999997742            2577788889999999987


Q ss_pred             CCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC---C-CEEEEEeCCCcEEEEeCCCCE
Q 043707          193 KNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE---Q-GLLYSGSWDKTLKVWRISDCK  268 (347)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~---~-~~l~s~s~dg~i~vwdl~~~~  268 (347)
                      +.......                                .|.+++..++|-+.   . ..|+.-....++.+|+..+|+
T Consensus        99 ~s~~~~l~--------------------------------~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~  146 (1062)
T KOG1912|consen   99 ASVINWLS--------------------------------HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE  146 (1062)
T ss_pred             hhhhhhhc--------------------------------CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCc
Confidence            75433222                                37778888888762   3 567777778899999999999


Q ss_pred             EEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEc
Q 043707          269 CLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRR  305 (347)
Q Consensus       269 ~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~  305 (347)
                      ..-....-.....|+.+.|=.  .+..-+..|.|-+-+.
T Consensus       147 k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~  185 (1062)
T KOG1912|consen  147 KFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKD  185 (1062)
T ss_pred             eeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEec
Confidence            887777666677778777632  4444445555555543

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=0.00038  Score=64.83  Aligned_cols=93  Identities=18%  Similarity=0.173  Sum_probs=72.0

Q ss_pred             CCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCee-E
Q 043707          162 GLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVS-C  240 (347)
Q Consensus       162 ~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~  240 (347)
                      ..|.-+.|+|.-..||.+..+|.|.+..+.-.+ ..     ..|                           -+...++ +
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qR-lw-----tip---------------------------~p~~~v~~s   67 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQR-LW-----TIP---------------------------IPGENVTAS   67 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEeccce-eE-----ecc---------------------------CCCCcccee
Confidence            457889999988899999999999988876222 11     111                           1555566 9


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEe-cCCCcEEEEEeCC
Q 043707          241 LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN-AHDDAINSVVAGF  287 (347)
Q Consensus       241 l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~-~h~~~v~~i~~~~  287 (347)
                      ++|.|||++|+.|-.||+|++.|..++..+..+. .....|.++.|.+
T Consensus        68 L~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   68 LCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence            9999999999999999999999999998877732 2456677787753

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=0.00073  Score=59.68  Aligned_cols=154  Identities=8%  Similarity=0.112  Sum_probs=94.4

Q ss_pred             EEEEeC--CCcceeeecCCCCeeEEEEeCCCC-EEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEE
Q 043707          145 IRVWKN--LKEFSGFKSNSGLVKAIIITGDSN-KIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYV  221 (347)
Q Consensus       145 I~vwd~--~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (347)
                      |++.+.  .+....+..|...|.+++|+|..+ .+..++.+.+|+|.|+++........                     
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~---------------------  233 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI---------------------  233 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee---------------------
Confidence            555542  233445667788999999999655 78999999999999999875432222                     


Q ss_pred             EEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCEE-EEEEec--CCCcEEEEEeC------C-CCE
Q 043707          222 EVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCKC-LESINA--HDDAINSVVAG------F-DSL  290 (347)
Q Consensus       222 ~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwdl~~~~~-~~~~~~--h~~~v~~i~~~------~-~~~  290 (347)
                                 .+ ..+++++|.-+ .++|+.|...|.|.|||++..+- +..+.+  ...+|..|+.-      + .|+
T Consensus       234 -----------a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~ggl  301 (463)
T KOG1645|consen  234 -----------AY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGL  301 (463)
T ss_pred             -----------cc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccce
Confidence                       13 78899999886 57889999999999999987542 222222  12334443321      1 235


Q ss_pred             EEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCC
Q 043707          291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQES  336 (347)
Q Consensus       291 l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~  336 (347)
                      ++....+  +..|.+.....   ..+...-.+..+...++..++-.
T Consensus       302 Lv~~lt~--l~f~ei~~s~~---~~p~vlele~pG~cismqy~~~s  342 (463)
T KOG1645|consen  302 LVFALTV--LQFYEIVFSAE---CLPCVLELEPPGICISMQYHGVS  342 (463)
T ss_pred             EEeeehh--hhhhhhhcccc---CCCcccccCCCcceeeeeecCcc
Confidence            5554444  45676653221   11111112234456666666643

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.49  E-value=0.003  Score=62.17  Aligned_cols=91  Identities=14%  Similarity=0.197  Sum_probs=66.8

Q ss_pred             CEEEEEeCCCcEEEEeCCCC--EEEEE-Ee--cCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhc
Q 043707          248 GLLYSGSWDKTLKVWRISDC--KCLES-IN--AHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLK  322 (347)
Q Consensus       248 ~~l~s~s~dg~i~vwdl~~~--~~~~~-~~--~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~  322 (347)
                      .--+.|-.+..+..||.|-.  +++.. .+  .......|++-..+|+||+|+.+|.||+||.- +.+     ....+.+
T Consensus       543 e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~-----AKT~lp~  616 (794)
T PF08553_consen  543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKR-----AKTALPG  616 (794)
T ss_pred             CceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeeccc-chh-----hhhcCCC
Confidence            34566777889999999853  23311 11  23456788888889999999999999999953 222     3344556


Q ss_pred             cCCcEEEEEEccCCCEEEEecC
Q 043707          323 QENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       323 h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      -..+|.+|..+.||++|++.+.
T Consensus       617 lG~pI~~iDvt~DGkwilaTc~  638 (794)
T PF08553_consen  617 LGDPIIGIDVTADGKWILATCK  638 (794)
T ss_pred             CCCCeeEEEecCCCcEEEEeec
Confidence            6889999999999999887764

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.48  E-value=0.01  Score=54.45  Aligned_cols=168  Identities=13%  Similarity=0.149  Sum_probs=88.1

Q ss_pred             CeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCce-eeeecccccccceEEeccCCCeEEEEeec----------ceeee
Q 043707          163 LVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSV-HKRVGSLPTFKDYVKSSVNPKNYVEVRRN----------RNVLK  231 (347)
Q Consensus       163 ~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~  231 (347)
                      .|..+.|.++...|+.|...|.|.||.....+... ............-+........++++...          ...+.
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            58889999998899999999999999887654322 11000000000001111112223332221          11122


Q ss_pred             eecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEe--c------CCCcEEEEEeC-----CCC----EEEEE
Q 043707          232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN--A------HDDAINSVVAG-----FDS----LVFTG  294 (347)
Q Consensus       232 ~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~--~------h~~~v~~i~~~-----~~~----~l~s~  294 (347)
                      ....++|++++.+ +=.+++.|..+|.+.|.|+|....+..-.  .      ....|+++.|.     .|+    .+++|
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            2347899999987 55699999999999999999888776632  1      23467788775     233    78899


Q ss_pred             eCCCcEEEEEcccCCc-cceeeehhhhhccCCcEEEEE
Q 043707          295 SADGTVKVWRRELQGK-GTKHFLAQVLLKQENAITALA  331 (347)
Q Consensus       295 ~~dg~I~vwd~~~~~~-~~~~~~~~~~~~h~~~V~~l~  331 (347)
                      ...|.+.+|.+..... ............+.+.|..|.
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~  199 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSII  199 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEE
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEE
Confidence            9999999999863221 111112222234556666655

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.45  E-value=0.022  Score=48.36  Aligned_cols=151  Identities=14%  Similarity=0.160  Sum_probs=85.9

Q ss_pred             CCEEEEecCCCcEEEEeCCCc--ceee-ecCC---CCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeeccccc
Q 043707          133 GDLLYTGSDSKNIRVWKNLKE--FSGF-KSNS---GLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPT  206 (347)
Q Consensus       133 ~~~l~tg~~dg~I~vwd~~~~--~~~~-~~h~---~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~  206 (347)
                      +..++.+..++.|+.+|....  .... ....   ...........+..++.+..++.|..+|.++++..........+.
T Consensus        76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~  155 (238)
T PF13360_consen   76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG  155 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred             ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence            556677777888999984433  3331 2111   111222222236688889889999999999997654444321110


Q ss_pred             ccceEEeccCCCeEEEEeecceeeeeecCCCe-eEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEe
Q 043707          207 FKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAV-SCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVA  285 (347)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V-~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~  285 (347)
                      ...+                      .....+ ..+.+. ++ .++.+..++.+..+|+.+++.+-...  ...+..+..
T Consensus       156 ~~~~----------------------~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~~~  209 (238)
T PF13360_consen  156 SSPI----------------------SSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSLPS  209 (238)
T ss_dssp             S--E----------------------EEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECECEE
T ss_pred             Ccce----------------------eeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCCce
Confidence            0000                      000111 222222 34 77777778864444999999764333  333444334


Q ss_pred             CCCCEEEEEeCCCcEEEEEcccCC
Q 043707          286 GFDSLVFTGSADGTVKVWRRELQG  309 (347)
Q Consensus       286 ~~~~~l~s~~~dg~I~vwd~~~~~  309 (347)
                      ..++.|+.++.++.|..||+++++
T Consensus       210 ~~~~~l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  210 VDGGTLYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             CCCTEEEEEETTTEEEEEETTTTE
T ss_pred             eeCCEEEEEeCCCEEEEEECCCCC
Confidence            445677777799999999998654

...

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.38  E-value=0.00019  Score=69.34  Aligned_cols=149  Identities=15%  Similarity=0.217  Sum_probs=102.1

Q ss_pred             CCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeeccee
Q 043707          150 NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNV  229 (347)
Q Consensus       150 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (347)
                      -.+..+.|..|...-+|++|+.+.+.|+.|+..|.|+++++.++.......                             
T Consensus      1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~n----------------------------- 1140 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVN----------------------------- 1140 (1516)
T ss_pred             hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccc-----------------------------
Confidence            345567788899999999999999999999999999999999986433322                             


Q ss_pred             eeeecCCCeeEEEEcCCCCEEEEEeCCC--cEEEEeCCC-CEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEc
Q 043707          230 LKIRHYDAVSCLSLNAEQGLLYSGSWDK--TLKVWRISD-CKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRR  305 (347)
Q Consensus       230 ~~~~h~~~V~~l~~~~~~~~l~s~s~dg--~i~vwdl~~-~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~  305 (347)
                         .|..+|+-+.=+.+|..+++.+.-.  -..+|++.. +...++|..    -.++.|+... .-+.|.......+||+
T Consensus      1141 ---cH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDv 1213 (1516)
T KOG1832|consen 1141 ---CHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDV 1213 (1516)
T ss_pred             ---ccccccccccccCCcceeeeeccccCchHHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEec
Confidence               4999999998888988777765433  467899864 455555542    3456776543 2234444567889999


Q ss_pred             ccCCccceeeehhh-hhc---cCCcEEEEEEccCCCEEE
Q 043707          306 ELQGKGTKHFLAQV-LLK---QENAITALAVNQESAVVY  340 (347)
Q Consensus       306 ~~~~~~~~~~~~~~-~~~---h~~~V~~l~~~p~~~~l~  340 (347)
                      ++...      +++ +..   .+..=+...|+|+..+|.
T Consensus      1214 qT~~~------l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1214 QTCSP------LQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred             ccCcH------HHHhcCcchhhhhhccccccCCCcceEe
Confidence            86543      222 111   112225667777666554

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.34  E-value=0.12  Score=47.98  Aligned_cols=49  Identities=20%  Similarity=0.375  Sum_probs=36.9

Q ss_pred             cEEEEeC-CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 043707          144 NIRVWKN-LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRK  193 (347)
Q Consensus       144 ~I~vwd~-~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~  193 (347)
                      .|+||+. ++.+..+.-..+.|.++.|+.+. .|+.-..||.++++|+...
T Consensus        62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~  111 (410)
T PF04841_consen   62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGE  111 (410)
T ss_pred             EEEEECCCCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCc
Confidence            4888883 45555555445899999998864 6677778999999998643

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.30  E-value=0.061  Score=49.72  Aligned_cols=63  Identities=14%  Similarity=0.148  Sum_probs=43.8

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCC-cEEEEEeCCCCEEEEEeCCCcEEEEEcccCC
Q 043707          246 EQGLLYSGSWDKTLKVWRISDCKCLESINAHDD-AINSVVAGFDSLVFTGSADGTVKVWRRELQG  309 (347)
Q Consensus       246 ~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~-~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~  309 (347)
                      .+..++.++.+|.+..+|..+++.+-....-.. ...+... -++.|+.++.||.|.+.|..+++
T Consensus       293 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v-~~g~l~v~~~~G~l~~ld~~tG~  356 (394)
T PRK11138        293 DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL-YNGYLVVGDSEGYLHWINREDGR  356 (394)
T ss_pred             ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE-ECCEEEEEeCCCEEEEEECCCCC
Confidence            356788888899999999999987644322111 1111222 26788899999999999987654

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.23  E-value=0.11  Score=48.17  Aligned_cols=175  Identities=13%  Similarity=0.092  Sum_probs=91.7

Q ss_pred             ccceeEeeeeccccEEEEeec-CCEEEEecCCCcEEEEeCCCcc--------eeeecCCCCeeEEEEeCCCCEEEEEeCC
Q 043707          112 CNGLIGSIVRKEGHIYSLAAS-GDLLYTGSDSKNIRVWKNLKEF--------SGFKSNSGLVKAIIITGDSNKIFTGHQD  182 (347)
Q Consensus       112 ~~~~i~~l~~h~~~V~~l~~~-~~~l~tg~~dg~I~vwd~~~~~--------~~~~~h~~~V~~l~~sp~~~~l~s~~~D  182 (347)
                      .+.++.++.--.+.|.++.|. .+.|+.-..||.++++|.....        .........+....+..+|-.+++.  +
T Consensus        69 sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~--~  146 (410)
T PF04841_consen   69 SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTG--N  146 (410)
T ss_pred             CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCEEEECC--C
Confidence            334455655555899999985 4577788899999999964333        1111111222233333355333433  3


Q ss_pred             CcEEEEecCCCCCceeeeecccccccc----------eEEeccCCCeEEEEeecceeeeee--------cCCCeeEEEEc
Q 043707          183 GKIRIWKVSRKNPSVHKRVGSLPTFKD----------YVKSSVNPKNYVEVRRNRNVLKIR--------HYDAVSCLSLN  244 (347)
Q Consensus       183 g~I~vwd~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~--------h~~~V~~l~~~  244 (347)
                      +.+.+-+--... .........|....          ......+....+....+.....+.        ..+++..|+++
T Consensus       147 ~~~~~v~n~~~~-~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~i~~~~~i~~iavS  225 (410)
T PF04841_consen  147 NRFYVVNNIDEP-VKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQIDSDGPIIKIAVS  225 (410)
T ss_pred             CeEEEEeCcccc-chhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccccccCCCCeEEEEEC
Confidence            444333221111 01111111111110          011111222222222222222111        23579999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCEEEEEEecC-CCcEEEEEeCCCC
Q 043707          245 AEQGLLYSGSWDKTLKVWRISDCKCLESINAH-DDAINSVVAGFDS  289 (347)
Q Consensus       245 ~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h-~~~v~~i~~~~~~  289 (347)
                      |++++++.-..+|.+.|....-.+.+..+... ......+.|.-+.
T Consensus       226 png~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  226 PNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             CCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence            99999999999999999987666666666544 3455677776554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.21  E-value=0.0016  Score=62.87  Aligned_cols=73  Identities=19%  Similarity=0.287  Sum_probs=63.0

Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCC
Q 043707          237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQG  309 (347)
Q Consensus       237 ~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~  309 (347)
                      .+++++|+|..-.|+.|=.-|.+.+|...+.+.-.....|..+|..+.|+++| .++++..-|.|.+|.....+
T Consensus        61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g  134 (1416)
T KOG3617|consen   61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIG  134 (1416)
T ss_pred             ehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecc
Confidence            45679999998888888888999999988777666667899999999999998 89999999999999887443

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.16  E-value=0.0093  Score=54.92  Aligned_cols=102  Identities=12%  Similarity=0.193  Sum_probs=71.2

Q ss_pred             CeeEEEEcCCCC-------EEEEEeCCCcEEEEeCCCC-E-EEEEEecC----CCcEEEEEeCCCCEEEEEeCCCcEEEE
Q 043707          237 AVSCLSLNAEQG-------LLYSGSWDKTLKVWRISDC-K-CLESINAH----DDAINSVVAGFDSLVFTGSADGTVKVW  303 (347)
Q Consensus       237 ~V~~l~~~~~~~-------~l~s~s~dg~i~vwdl~~~-~-~~~~~~~h----~~~v~~i~~~~~~~l~s~~~dg~I~vw  303 (347)
                      .|+-+.+.|+..       .-+.|-.|..|.-||.|-. + .+...+.|    .....|.+-..+|+|++|+.+|.|++|
T Consensus       377 di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLY  456 (644)
T KOG2395|consen  377 DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLY  456 (644)
T ss_pred             CcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEee
Confidence            366666666532       2244556888999998732 2 22222333    234677777788999999999999999


Q ss_pred             EcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707          304 RRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       304 d~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      |. .+..     ....+.+-..+|+.|..+.+|++|++.+.
T Consensus       457 dr-i~~~-----AKTAlPgLG~~I~hVdvtadGKwil~Tc~  491 (644)
T KOG2395|consen  457 DR-IGRR-----AKTALPGLGDAIKHVDVTADGKWILATCK  491 (644)
T ss_pred             hh-hhhh-----hhhcccccCCceeeEEeeccCcEEEEecc
Confidence            98 3322     34456677889999999999998887664

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.16  E-value=0.016  Score=58.42  Aligned_cols=143  Identities=15%  Similarity=0.102  Sum_probs=94.1

Q ss_pred             CCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEE
Q 043707          162 GLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCL  241 (347)
Q Consensus       162 ~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  241 (347)
                      +.|.++.|..++..++.+..+|.|.+-|..+.......                                 .-...|.++
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg---------------------------------~vd~GI~aa  115 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVG---------------------------------NVDNGISAA  115 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeee---------------------------------eccCceEEE
Confidence            68999999999999999999999999987765422211                                 145789999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCC----C-------------------CEEEEEEecC---------------------C
Q 043707          242 SLNAEQGLLYSGSWDKTLKVWRIS----D-------------------CKCLESINAH---------------------D  277 (347)
Q Consensus       242 ~~~~~~~~l~s~s~dg~i~vwdl~----~-------------------~~~~~~~~~h---------------------~  277 (347)
                      +|+||+.+++..+.++++.+-+-.    .                   |+.-..|++.                     .
T Consensus       116 swS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~  195 (1265)
T KOG1920|consen  116 SWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQD  195 (1265)
T ss_pred             eecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhc
Confidence            999999999999888877665421    0                   1111122211                     1


Q ss_pred             CcEEEEEeCCCC-EEEEE----eCC-CcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707          278 DAINSVVAGFDS-LVFTG----SAD-GTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       278 ~~v~~i~~~~~~-~l~s~----~~d-g~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      +.-++|.|--|| ++|+.    ..+ +.|+|||.+ +.      +-..-......=.+++|-|.|..+++-..
T Consensus       196 ~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~------Lns~se~~~~l~~~LsWkPsgs~iA~iq~  261 (1265)
T KOG1920|consen  196 DHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GA------LNSTSEPVEGLQHSLSWKPSGSLIAAIQC  261 (1265)
T ss_pred             cCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-ch------hhcccCcccccccceeecCCCCeEeeeee
Confidence            122458898888 66652    234 899999997 21      11111112233457899998888887544

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.15  E-value=0.07  Score=51.78  Aligned_cols=186  Identities=14%  Similarity=0.102  Sum_probs=100.7

Q ss_pred             EEeecCCEEEEec------CCC--cEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEeCC-CcEEEEecCCCCCcee
Q 043707          128 SLAASGDLLYTGS------DSK--NIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQD-GKIRIWKVSRKNPSVH  198 (347)
Q Consensus       128 ~l~~~~~~l~tg~------~dg--~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D-g~I~vwd~~~~~~~~~  198 (347)
                      +++++|+.++...      .|.  .|.+++.......+.. ......-.|+|+|..|++.... ..+++.+-........
T Consensus       356 aiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~  434 (591)
T PRK13616        356 ALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLAR  434 (591)
T ss_pred             eECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CCCCCCceECCCCCceEEEecCcceEEEeccCCCceEEE
Confidence            3556777554443      243  4444454433333322 2247888999998888877643 2233333221111110


Q ss_pred             eeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEE---EeCCCCE-EE---E
Q 043707          199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKV---WRISDCK-CL---E  271 (347)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~v---wdl~~~~-~~---~  271 (347)
                      ..+                      .......  .....|..+.|+|||..++... ++.|+|   -....++ .+   .
T Consensus       435 ~~v----------------------d~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~  489 (591)
T PRK13616        435 TPV----------------------DASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPR  489 (591)
T ss_pred             Eec----------------------cCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccE
Confidence            000                      0000000  2356799999999999888766 577777   4444453 11   1


Q ss_pred             EEe-cCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhc--cCCcEEEEEEccCCCEEEEecCCC
Q 043707          272 SIN-AHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLK--QENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       272 ~~~-~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~--h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      .+. .-...+..+.|..++.|+++..++...+|.+...+...     ..+..  ....+.+|+-.+.  .|+.+..+|
T Consensus       490 ~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~-----~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g  560 (591)
T PRK13616        490 EVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNS-----DALPSRNLSAPVVAVAASPS--TVYVTDARA  560 (591)
T ss_pred             EeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccc-----cccCCCCccCceEEEecCCc--eEEEEcCCc
Confidence            122 22334678999999866677666667778776555411     11122  2557788887763  455555554

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.11  E-value=0.059  Score=52.57  Aligned_cols=163  Identities=13%  Similarity=0.225  Sum_probs=103.8

Q ss_pred             eeEeeeecccc-EEEEeec-C-CEEEEecCCC-----cEEEEeCCCc--------c---eeee----cCCCCeeEEEEeC
Q 043707          115 LIGSIVRKEGH-IYSLAAS-G-DLLYTGSDSK-----NIRVWKNLKE--------F---SGFK----SNSGLVKAIIITG  171 (347)
Q Consensus       115 ~i~~l~~h~~~-V~~l~~~-~-~~l~tg~~dg-----~I~vwd~~~~--------~---~~~~----~h~~~V~~l~~sp  171 (347)
                      ++..+..++.. |.-+... + .+|++-++|+     .|+||+..+.        +   +.+.    ....++.+++++.
T Consensus        56 ~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~  135 (933)
T KOG2114|consen   56 LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE  135 (933)
T ss_pred             eeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc
Confidence            33555555555 3333332 2 4787777665     4899984422        1   1111    1345788999999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCE-E
Q 043707          172 DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGL-L  250 (347)
Q Consensus       172 ~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l  250 (347)
                      +-+.++.|-.+|.|..+.-+--+...                            .+........++|+.+++..++.. +
T Consensus       136 ~l~~Iv~Gf~nG~V~~~~GDi~RDrg----------------------------sr~~~~~~~~~pITgL~~~~d~~s~l  187 (933)
T KOG2114|consen  136 DLKTIVCGFTNGLVICYKGDILRDRG----------------------------SRQDYSHRGKEPITGLALRSDGKSVL  187 (933)
T ss_pred             cccEEEEEecCcEEEEEcCcchhccc----------------------------cceeeeccCCCCceeeEEecCCceeE
Confidence            88899999999999988644221100                            011111235678999999988776 4


Q ss_pred             EEEeCCCcEEEEeCCCCEE-EEEEecCCCcEEEEEeCCCCE-EEEEeCCCcEEEEEccc
Q 043707          251 YSGSWDKTLKVWRISDCKC-LESINAHDDAINSVVAGFDSL-VFTGSADGTVKVWRREL  307 (347)
Q Consensus       251 ~s~s~dg~i~vwdl~~~~~-~~~~~~h~~~v~~i~~~~~~~-l~s~~~dg~I~vwd~~~  307 (347)
                      +++. -..|.+|.+....+ +..+..|...++|..+++... ++++ .+.-|.+|+...
T Consensus       188 Fv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca-~~e~l~fY~sd~  244 (933)
T KOG2114|consen  188 FVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA-GSEFLYFYDSDG  244 (933)
T ss_pred             EEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe-cCceEEEEcCCC
Confidence            4444 45799999973332 455778888999999987654 5444 345789998873

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.10  E-value=0.016  Score=53.71  Aligned_cols=150  Identities=13%  Similarity=0.112  Sum_probs=88.6

Q ss_pred             eeecCCCCeeEEEEeCCCCEEEEEe---CC-CcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeee
Q 043707          156 GFKSNSGLVKAIIITGDSNKIFTGH---QD-GKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLK  231 (347)
Q Consensus       156 ~~~~h~~~V~~l~~sp~~~~l~s~~---~D-g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (347)
                      .+..-...+..-+|+|++..++-..   .. ..+.++|+.+++......                               
T Consensus       187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-------------------------------  235 (425)
T COG0823         187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-------------------------------  235 (425)
T ss_pred             EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-------------------------------
Confidence            3333445677778999887655442   22 358888888876433222                               


Q ss_pred             eecCCCeeEEEEcCCCCEEEE-EeCCCc--EEEEeCCCCEEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcc
Q 043707          232 IRHYDAVSCLSLNAEQGLLYS-GSWDKT--LKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRE  306 (347)
Q Consensus       232 ~~h~~~V~~l~~~~~~~~l~s-~s~dg~--i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~  306 (347)
                        ....-..-+|+|||+.|+- ...||.  |.+.|+.... +..+..-.+.-..=.|+|||  ++++.+..|.-.||-..
T Consensus       236 --~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~  312 (425)
T COG0823         236 --FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYD  312 (425)
T ss_pred             --cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEEC
Confidence              2223334689999876655 445666  6666776655 33343222222244689998  66677788877777665


Q ss_pred             cCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707          307 LQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       307 ~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      ..+..     .+.+......-..-.|+|||++|+..+.
T Consensus       313 ~~g~~-----~~riT~~~~~~~~p~~SpdG~~i~~~~~  345 (425)
T COG0823         313 LEGSQ-----VTRLTFSGGGNSNPVWSPDGDKIVFESS  345 (425)
T ss_pred             CCCCc-----eeEeeccCCCCcCccCCCCCCEEEEEec
Confidence            44431     1222222222227789999999887764

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.07  E-value=0.02  Score=53.35  Aligned_cols=167  Identities=13%  Similarity=0.131  Sum_probs=85.4

Q ss_pred             EEeecCCEEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEE-ecCCCCCceeeeeccccc
Q 043707          128 SLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW-KVSRKNPSVHKRVGSLPT  206 (347)
Q Consensus       128 ~l~~~~~~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw-d~~~~~~~~~~~~~~~~~  206 (347)
                      ...++|++++.++ ||...|+........   ..+.-...+|.+.+ .+|+-...++|.|+ +++... .....      
T Consensus        39 s~npngr~v~V~g-~geY~iyt~~~~r~k---~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~-~k~i~------  106 (443)
T PF04053_consen   39 SHNPNGRFVLVCG-DGEYEIYTALAWRNK---AFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEV-VKSIK------  106 (443)
T ss_dssp             EE-TTSSEEEEEE-TTEEEEEETTTTEEE---EEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-T-T----------
T ss_pred             EECCCCCEEEEEc-CCEEEEEEccCCccc---ccCceeEEEEecCc-cEEEEECCCeEEEEEcCcccc-ceEEc------
Confidence            4556788887744 677888873322211   12445577888844 67777778889996 332221 11111      


Q ss_pred             ccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeC
Q 043707          207 FKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAG  286 (347)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~  286 (347)
                                                 -...+..|-.   |.+|...+.+ .|.+||+.+++.+..+...  +|..+.|+
T Consensus       107 ---------------------------~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws  153 (443)
T PF04053_consen  107 ---------------------------LPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWS  153 (443)
T ss_dssp             ----------------------------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-
T ss_pred             ---------------------------CCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEE
Confidence                                       1112333332   7777777644 8999999999999999743  48999999


Q ss_pred             CCC-EEEEEeCCCcEEEEEcccC------CccceeeehhhhhccCCcEEEEEEccCCCEEEEe
Q 043707          287 FDS-LVFTGSADGTVKVWRRELQ------GKGTKHFLAQVLLKQENAITALAVNQESAVVYCG  342 (347)
Q Consensus       287 ~~~-~l~s~~~dg~I~vwd~~~~------~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sg  342 (347)
                      +++ +++..+ +..+.|++....      ..+.. .....+..-...|.+.+|..+ -+|++.
T Consensus       154 ~~g~~val~t-~~~i~il~~~~~~~~~~~~~g~e-~~f~~~~E~~~~IkSg~W~~d-~fiYtT  213 (443)
T PF04053_consen  154 DDGELVALVT-KDSIYILKYNLEAVAAIPEEGVE-DAFELIHEISERIKSGCWVED-CFIYTT  213 (443)
T ss_dssp             TTSSEEEEE--S-SEEEEEE-HHHHHHBTTTB-G-GGEEEEEEE-S--SEEEEETT-EEEEE-
T ss_pred             CCCCEEEEEe-CCeEEEEEecchhcccccccCch-hceEEEEEecceeEEEEEEcC-EEEEEc
Confidence            998 555554 557888877633      00000 011111122457888888766 444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.04  E-value=0.00019  Score=66.83  Aligned_cols=157  Identities=15%  Similarity=0.211  Sum_probs=101.7

Q ss_pred             eeeeccccEEEEeec---CCEEEEe----cCCCcEEEEeCCCcce------eeec-CCCCeeEEEEeCCCCEEEEEeCCC
Q 043707          118 SIVRKEGHIYSLAAS---GDLLYTG----SDSKNIRVWKNLKEFS------GFKS-NSGLVKAIIITGDSNKIFTGHQDG  183 (347)
Q Consensus       118 ~l~~h~~~V~~l~~~---~~~l~tg----~~dg~I~vwd~~~~~~------~~~~-h~~~V~~l~~sp~~~~l~s~~~Dg  183 (347)
                      ...+|....++++|+   .+.||.|    -.|..+.|||....+.      .|.+ -......++|..+.+.+++|....
T Consensus        97 ~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr  176 (783)
T KOG1008|consen   97 VTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSR  176 (783)
T ss_pred             ecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccc
Confidence            344555667778875   3577777    3456799999553321      2222 223456888888888899999999


Q ss_pred             cEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC-CCCEEEEEeCCCcEEEE
Q 043707          184 KIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVW  262 (347)
Q Consensus       184 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~vw  262 (347)
                      .++++|++....... .+                                ....+..+...| .++++++-. ||.|.+|
T Consensus       177 ~~~ifdlRqs~~~~~-sv--------------------------------nTk~vqG~tVdp~~~nY~cs~~-dg~iAiw  222 (783)
T KOG1008|consen  177 SVHIFDLRQSLDSVS-SV--------------------------------NTKYVQGITVDPFSPNYFCSNS-DGDIAIW  222 (783)
T ss_pred             hhhhhhhhhhhhhhh-hh--------------------------------hhhhcccceecCCCCCceeccc-cCceeec
Confidence            999999984321110 00                                233456677788 566776655 9999999


Q ss_pred             e-CCCCE-EEEEEecC----CCcEEEEEeCCC--CEEEEEeC-CCcEEEEEcccC
Q 043707          263 R-ISDCK-CLESINAH----DDAINSVVAGFD--SLVFTGSA-DGTVKVWRRELQ  308 (347)
Q Consensus       263 d-l~~~~-~~~~~~~h----~~~v~~i~~~~~--~~l~s~~~-dg~I~vwd~~~~  308 (347)
                      | .+.-+ ++..+...    ...+..++|.|-  |++++... .++|+++|+...
T Consensus       223 D~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v  277 (783)
T KOG1008|consen  223 DTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVV  277 (783)
T ss_pred             cchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccccc
Confidence            9 44333 22222211    224889999996  57877775 478999998743

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.98  E-value=0.082  Score=47.38  Aligned_cols=177  Identities=15%  Similarity=0.191  Sum_probs=100.5

Q ss_pred             CEEEEecC----------CCcEEEEeCCC------cceee--ecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCC-
Q 043707          134 DLLYTGSD----------SKNIRVWKNLK------EFSGF--KSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKN-  194 (347)
Q Consensus       134 ~~l~tg~~----------dg~I~vwd~~~------~~~~~--~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~-  194 (347)
                      .+|+.|..          .|.|.+++..+      .++..  ....++|.+|+-. ++ +|+.+. .+.|.+|++...+ 
T Consensus        43 ~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~  119 (321)
T PF03178_consen   43 EYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKT  119 (321)
T ss_dssp             EEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSS
T ss_pred             CEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCccc
Confidence            47776633          28899998665      22222  3356889999877 33 555444 5799999998876 


Q ss_pred             CceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC-CEEEEEE
Q 043707          195 PSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD-CKCLESI  273 (347)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~-~~~~~~~  273 (347)
                      .......                               .....+.++...  +++++.|+....+.++..+. .+.+..+
T Consensus       120 l~~~~~~-------------------------------~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~v  166 (321)
T PF03178_consen  120 LLKKAFY-------------------------------DSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILV  166 (321)
T ss_dssp             EEEEEEE--------------------------------BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEE
T ss_pred             chhhhee-------------------------------cceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEE
Confidence            2111110                               122345555544  56999999888888875543 3333333


Q ss_pred             e--cCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCcc--cee-eehhhhhcc-CCcEEEE---EEcc--CCC----
Q 043707          274 N--AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG--TKH-FLAQVLLKQ-ENAITAL---AVNQ--ESA----  337 (347)
Q Consensus       274 ~--~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~--~~~-~~~~~~~~h-~~~V~~l---~~~p--~~~----  337 (347)
                      .  .....+.++.+-.++ .++++..+|.|.++........  ... .+.....-| ...|+++   ++.|  .+.    
T Consensus       167 a~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~  246 (321)
T PF03178_consen  167 ARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPN  246 (321)
T ss_dssp             EEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTE
T ss_pred             EecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccc
Confidence            2  234567888776444 9999999999999988632110  011 122222223 4567877   5555  222    


Q ss_pred             --EEEEecCCC
Q 043707          338 --VVYCGSSDG  346 (347)
Q Consensus       338 --~l~sgs~DG  346 (347)
                        .++.++.+|
T Consensus       247 ~~~i~~~T~~G  257 (321)
T PF03178_consen  247 RPQILYGTVDG  257 (321)
T ss_dssp             EEEEEEEETTS
T ss_pred             cceEEEEecCC
Confidence              366666666

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.97  E-value=0.0084  Score=59.57  Aligned_cols=78  Identities=14%  Similarity=0.218  Sum_probs=59.4

Q ss_pred             cEEEEeecCCEEEEecCCCcEEEEeCCCcceee---ecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeee
Q 043707          125 HIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGF---KSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRV  201 (347)
Q Consensus       125 ~V~~l~~~~~~l~tg~~dg~I~vwd~~~~~~~~---~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~  201 (347)
                      .+.+.+.-+..++.|+..|.|-..|....+..+   ..-.++|++++|+.+|..++.|-.+|.|.+||+..++.......
T Consensus        91 ~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e  170 (1206)
T KOG2079|consen   91 GVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITE  170 (1206)
T ss_pred             ceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeee
Confidence            344555556789999999999998865543321   22357999999999999999999999999999998876554444


Q ss_pred             c
Q 043707          202 G  202 (347)
Q Consensus       202 ~  202 (347)
                      .
T Consensus       171 ~  171 (1206)
T KOG2079|consen  171 H  171 (1206)
T ss_pred             c
Confidence            3

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.91  E-value=0.18  Score=43.55  Aligned_cols=149  Identities=15%  Similarity=0.100  Sum_probs=88.6

Q ss_pred             CeeEEEEeCCCCEEEEEe---CCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCee
Q 043707          163 LVKAIIITGDSNKIFTGH---QDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVS  239 (347)
Q Consensus       163 ~V~~l~~sp~~~~l~s~~---~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  239 (347)
                      .+...+++++++.++...   ....++++......  ....                                 ....+.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~--~~~~---------------------------------~g~~l~   69 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV--RPVL---------------------------------TGGSLT   69 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc--eeec---------------------------------cCCccc
Confidence            688999999998776655   22345555433221  1110                                 123567


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEe-CCCCEE-EEEEecC--CCcEEEEEeCCCC----EEEEEeCCCcEEEEEcccCCcc
Q 043707          240 CLSLNAEQGLLYSGSWDKTLKVWR-ISDCKC-LESINAH--DDAINSVVAGFDS----LVFTGSADGTVKVWRRELQGKG  311 (347)
Q Consensus       240 ~l~~~~~~~~l~s~s~dg~i~vwd-l~~~~~-~~~~~~h--~~~v~~i~~~~~~----~l~s~~~dg~I~vwd~~~~~~~  311 (347)
                      .-+|++++...+....+...+++. ..+++. ...+...  ...|..+.++|||    +++....++.|.|=-+.....+
T Consensus        70 ~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g  149 (253)
T PF10647_consen   70 RPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG  149 (253)
T ss_pred             cccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC
Confidence            778999977776666666666664 333322 1122211  1279999999999    3334455688888776544332


Q ss_pred             ceeee---hhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          312 TKHFL---AQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       312 ~~~~~---~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      ....+   ..........+++++|.+++.+++.+...+
T Consensus       150 ~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~  187 (253)
T PF10647_consen  150 VPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAG  187 (253)
T ss_pred             CcceeccceEecccccCcceeeeecCCCEEEEEeCCCC
Confidence            11111   122223356899999999998888776543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.89  E-value=0.0036  Score=51.51  Aligned_cols=140  Identities=19%  Similarity=0.251  Sum_probs=82.5

Q ss_pred             EEEecCCCcEEEEeCCCcceeeecCCCCeeEE-EEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEec
Q 043707          136 LYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAI-IITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSS  214 (347)
Q Consensus       136 l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l-~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  214 (347)
                      |..-+.||.|+-++..+.....+.- ..+.+. ....-+..++.|+.+|.|.+|.............             
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse-~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~-------------   98 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSE-RFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVC-------------   98 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhh-hhhhcceeecccCceEEeecccceEEEecCCccchHHHhhh-------------
Confidence            4445667888777754332111110 111122 1122345899999999999998863211100000             


Q ss_pred             cCCCeEEEEeecceeeeeecCCCeeEE-EEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCC-CcEE-EEEeCCCCEE
Q 043707          215 VNPKNYVEVRRNRNVLKIRHYDAVSCL-SLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHD-DAIN-SVVAGFDSLV  291 (347)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~h~~~V~~l-~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~-~~v~-~i~~~~~~~l  291 (347)
                                        .-...|.++ .--.++.+..++++||.|+.|.+.-.+.+.....|. ..+. .+..+.+..+
T Consensus        99 ------------------s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i  160 (238)
T KOG2444|consen   99 ------------------SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFL  160 (238)
T ss_pred             ------------------cccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceE
Confidence                              011223332 222245688999999999999998888887777676 3333 3344445577


Q ss_pred             EEE--eCCCcEEEEEccc
Q 043707          292 FTG--SADGTVKVWRREL  307 (347)
Q Consensus       292 ~s~--~~dg~I~vwd~~~  307 (347)
                      +.+  +.|..++.|++..
T Consensus       161 ~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  161 KIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             Eeeccccchhhhhcchhh
Confidence            777  8888889998863

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.87  E-value=0.095  Score=44.25  Aligned_cols=134  Identities=16%  Similarity=0.168  Sum_probs=81.6

Q ss_pred             CCEEEEecCCCcEEEEeCCCcceeeec-CCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceE
Q 043707          133 GDLLYTGSDSKNIRVWKNLKEFSGFKS-NSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYV  211 (347)
Q Consensus       133 ~~~l~tg~~dg~I~vwd~~~~~~~~~~-h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~  211 (347)
                      ..+++.|+..+.+.--|.......++. -...|.+-+.- -|++++.|+..|.+++.+++++.+......          
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~----------   91 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI----------   91 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeee----------
Confidence            346666666666666554322222211 12344443333 355899999999999999999864433221          


Q ss_pred             EeccCCCeEEEEeecceeeeeecCCCeeE-EEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCC-CC
Q 043707          212 KSSVNPKNYVEVRRNRNVLKIRHYDAVSC-LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGF-DS  289 (347)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~-~~  289 (347)
                                             .+.|.+ -...+++.+++.|+.|++.+..|.++..++.+.+...+...+=+..+ ++
T Consensus        92 -----------------------~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~  148 (354)
T KOG4649|consen   92 -----------------------LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDG  148 (354)
T ss_pred             -----------------------hhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCc
Confidence                                   122221 23467899999999999999999999999988775444333334444 34


Q ss_pred             EEEEEeCCCcE
Q 043707          290 LVFTGSADGTV  300 (347)
Q Consensus       290 ~l~s~~~dg~I  300 (347)
                      -|+.+...|.|
T Consensus       149 sly~a~t~G~v  159 (354)
T KOG4649|consen  149 SLYAAITAGAV  159 (354)
T ss_pred             eEEEEeccceE
Confidence            44444444443

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.83  E-value=0.0067  Score=60.26  Aligned_cols=101  Identities=22%  Similarity=0.410  Sum_probs=75.4

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEE
Q 043707          173 SNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYS  252 (347)
Q Consensus       173 ~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s  252 (347)
                      +..++.|+..|.|...|+...-.......                               ....+|++++|+.+|..++.
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne-------------------------------~v~~~Vtsvafn~dg~~l~~  147 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNE-------------------------------RVQGPVTSVAFNQDGSLLLA  147 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccchhhcCC-------------------------------ccCCcceeeEecCCCceecc
Confidence            34788888889998888876411111100                               25678999999999999999


Q ss_pred             EeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEe---CCC-CEEEEEeCCCcEEEEEcc
Q 043707          253 GSWDKTLKVWRISDCKCLESINAHDDAINSVVA---GFD-SLVFTGSADGTVKVWRRE  306 (347)
Q Consensus       253 ~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~---~~~-~~l~s~~~dg~I~vwd~~  306 (347)
                      |-.+|.|.+||+..++.++.+..|..+.+.+.+   ..+ ..++++...|.  +|.+-
T Consensus       148 G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  148 GLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             ccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            999999999999999999998877766655543   233 37888888886  67664

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.72  E-value=0.0054  Score=37.52  Aligned_cols=35  Identities=26%  Similarity=0.371  Sum_probs=30.4

Q ss_pred             cCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEE
Q 043707          234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC  269 (347)
Q Consensus       234 h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~  269 (347)
                      ....|.+++|+|...+|+.+..||.|.++++ +++.
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            3456999999999999999999999999998 5543

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.70  E-value=0.0073  Score=54.35  Aligned_cols=153  Identities=16%  Similarity=0.115  Sum_probs=100.8

Q ss_pred             cCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCe
Q 043707          159 SNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAV  238 (347)
Q Consensus       159 ~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  238 (347)
                      -|...|+.+.... .+++.+++.||.++.|.-..-.-  ...+.                           ....|...|
T Consensus         7 mhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isG--vEfVK---------------------------hFraHL~~I   56 (558)
T KOG0882|consen    7 MHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISG--VEFVK---------------------------HFRAHLGVI   56 (558)
T ss_pred             cccceeeeEeeeh-hheEEeeecchhhhhcCCCCccc--eeehh---------------------------hhHHHHHHH
Confidence            3677777766554 34999999999999996543110  00000                           011377788


Q ss_pred             eEEEEcCCCCEEEEEeC-CCcEEEEeCCCCEEEEEEecC--CCcEEEEEeCCCC---EEEEEe-CCCcEEEEEcccCCcc
Q 043707          239 SCLSLNAEQGLLYSGSW-DKTLKVWRISDCKCLESINAH--DDAINSVVAGFDS---LVFTGS-ADGTVKVWRRELQGKG  311 (347)
Q Consensus       239 ~~l~~~~~~~~l~s~s~-dg~i~vwdl~~~~~~~~~~~h--~~~v~~i~~~~~~---~l~s~~-~dg~I~vwd~~~~~~~  311 (347)
                      ..++.+-++.++.+.+. |..++++|+.+...+..++..  .+.+..+ .++..   .|+++. .++.|.|+|-..... 
T Consensus        57 ~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~-  134 (558)
T KOG0882|consen   57 LSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFC-  134 (558)
T ss_pred             HhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcC-
Confidence            88999999999999777 999999999877655444322  2222222 23332   555443 678999999874321 


Q ss_pred             ceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          312 TKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       312 ~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                         .....-.-|..+|..+.+.|-+..+++....|
T Consensus       135 ---q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g  166 (558)
T KOG0882|consen  135 ---QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG  166 (558)
T ss_pred             ---ccceecccccCceEEEEeeccccceeeccccc
Confidence               23334456889999999999988888766544

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.67  E-value=0.072  Score=51.05  Aligned_cols=113  Identities=9%  Similarity=-0.033  Sum_probs=71.0

Q ss_pred             eeeeecCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCCCEE------------EEEEecCCCcEEEEEeCCCC-EEEEE
Q 043707          229 VLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRISDCKC------------LESINAHDDAINSVVAGFDS-LVFTG  294 (347)
Q Consensus       229 ~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~vwdl~~~~~------------~~~~~~h~~~v~~i~~~~~~-~l~s~  294 (347)
                      ...+.-......+.++|||+++++++. +.++.|.|+.+.+.            +.+.+.-.+ -...+|.++| ...+.
T Consensus       314 ~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG-PLHTaFDg~G~aytsl  392 (635)
T PRK02888        314 TRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTL  392 (635)
T ss_pred             EEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC-cceEEECCCCCEEEeE
Confidence            444556677888999999998887765 89999999987553            333333233 3456788887 45566


Q ss_pred             eCCCcEEEEEcccC-----Cccceeeehhhhhcc-----CCcEEEEEEccCCCEEEEec
Q 043707          295 SADGTVKVWRRELQ-----GKGTKHFLAQVLLKQ-----ENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       295 ~~dg~I~vwd~~~~-----~~~~~~~~~~~~~~h-----~~~V~~l~~~p~~~~l~sgs  343 (347)
                      .-|.+|..|++...     ++. ....+..+..|     ......=.-.|+|++|++..
T Consensus       393 f~dsqv~kwn~~~a~~~~~g~~-~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        393 FLDSQIVKWNIEAAIRAYKGEK-VDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN  450 (635)
T ss_pred             eecceeEEEehHHHHHHhcccc-CCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence            78999999999752     110 11123333333     22222223367888888754

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.66  E-value=0.015  Score=54.20  Aligned_cols=135  Identities=10%  Similarity=0.101  Sum_probs=71.1

Q ss_pred             CCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCee
Q 043707          160 NSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVS  239 (347)
Q Consensus       160 h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  239 (347)
                      ..-....+.++|+|+.++.++ ||...|+.....+.                                     ...+.-.
T Consensus        31 ~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~-------------------------------------k~~G~g~   72 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRN-------------------------------------KAFGSGL   72 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEE-------------------------------------EEEEE-S
T ss_pred             CCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcc-------------------------------------cccCcee
Confidence            344578999999998888855 77777777322210                                     0223345


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehh
Q 043707          240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQ  318 (347)
Q Consensus       240 ~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~  318 (347)
                      ...|.+. +.+++-...++|.|+.--+.+....++.. ..+..|..   | +|+.. .++.|.+||..+..      .+.
T Consensus        73 ~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~---G~LL~~~-~~~~i~~yDw~~~~------~i~  140 (443)
T PF04053_consen   73 SFVWSSR-NRYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG---GNLLGVK-SSDFICFYDWETGK------LIR  140 (443)
T ss_dssp             EEEE-TS-SEEEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE----SSSEEEE-ETTEEEEE-TTT--------EEE
T ss_pred             EEEEecC-ccEEEEECCCeEEEEEcCccccceEEcCC-cccceEEc---CcEEEEE-CCCCEEEEEhhHcc------eee
Confidence            6788884 45666666888999732222222344422 23455543   5 44444 44489999998543      333


Q ss_pred             hhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          319 VLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       319 ~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      .+.  -.+|..|.|++++.+++..+.|.
T Consensus       141 ~i~--v~~vk~V~Ws~~g~~val~t~~~  166 (443)
T PF04053_consen  141 RID--VSAVKYVIWSDDGELVALVTKDS  166 (443)
T ss_dssp             EES--S-E-EEEEE-TTSSEEEEE-S-S
T ss_pred             EEe--cCCCcEEEEECCCCEEEEEeCCe
Confidence            332  22489999999999999988775

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.59  E-value=0.097  Score=50.80  Aligned_cols=142  Identities=10%  Similarity=0.027  Sum_probs=76.3

Q ss_pred             CCeeEEEEeCCCCEEEEEe------CCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecC
Q 043707          162 GLVKAIIITGDSNKIFTGH------QDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHY  235 (347)
Q Consensus       162 ~~V~~l~~sp~~~~l~s~~------~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  235 (347)
                      ..+...+++|+|+.++..-      .|+.-.||-...+.......                                 ..
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt---------------------------------~g  396 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVL---------------------------------EG  396 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeee---------------------------------cC
Confidence            4678899999998877665      24444444333221111000                                 11


Q ss_pred             CCeeEEEEcCCCCEEEEEeCC------------CcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEE
Q 043707          236 DAVSCLSLNAEQGLLYSGSWD------------KTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKV  302 (347)
Q Consensus       236 ~~V~~l~~~~~~~~l~s~s~d------------g~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~v  302 (347)
                      ...+.-.|+|+|..|++....            +.+.+.+++.++...   .....|..+.|+||| .++... +++|.+
T Consensus       397 ~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V  472 (591)
T PRK13616        397 HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL  472 (591)
T ss_pred             CCCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence            236778899998777666432            233333444333222   235579999999999 444333 577777


Q ss_pred             EEcccCCccc-eeeehhhhhc-cCCcEEEEEEccCCCEEE
Q 043707          303 WRRELQGKGT-KHFLAQVLLK-QENAITALAVNQESAVVY  340 (347)
Q Consensus       303 wd~~~~~~~~-~~~~~~~~~~-h~~~V~~l~~~p~~~~l~  340 (347)
                      =-+.....+. .......+.. -...+.++.|..++.+++
T Consensus       473 a~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V  512 (591)
T PRK13616        473 AVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVV  512 (591)
T ss_pred             EEEEeCCCCceeecccEEeecccCCccccceEecCCEEEE
Confidence            4333211111 1111111222 233468899999988553

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.57  E-value=0.41  Score=40.97  Aligned_cols=201  Identities=11%  Similarity=0.130  Sum_probs=104.5

Q ss_pred             eeeeccccEEEEeec---CCEEEEecCCCcEEEEeCC-CcceeeecC-CCCeeEEEEeCCCCEEEEEeCCCcEEEEecCC
Q 043707          118 SIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNL-KEFSGFKSN-SGLVKAIIITGDSNKIFTGHQDGKIRIWKVSR  192 (347)
Q Consensus       118 ~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~-~~~~~~~~h-~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~  192 (347)
                      .+.+-...+..+.++   +.++++....+.|..++.. +.++.+.-. -+-..+|++..++.++++--.++.+.+.++..
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~   95 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD   95 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence            344445568888875   3478888888888888865 333333322 25688999998887777666789999999855


Q ss_pred             CCCceee-eecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC---CE
Q 043707          193 KNPSVHK-RVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD---CK  268 (347)
Q Consensus       193 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~---~~  268 (347)
                      ....... ......                      ......++..+-.|+|++.++.|+.+-...-..||.++.   ..
T Consensus        96 ~~~~~~~~~~~~~~----------------------l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~  153 (248)
T PF06977_consen   96 DTTSLDRADVQKIS----------------------LGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGF  153 (248)
T ss_dssp             --TT--EEEEEEEE-------------------------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS
T ss_pred             cccccchhhceEEe----------------------cccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcc
Confidence            4321111 000000                      000012556688999999888777777766666776643   21


Q ss_pred             EEEE--Ee------cCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccce-eeehhhhh---ccCCcEEEEEEcc
Q 043707          269 CLES--IN------AHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTK-HFLAQVLL---KQENAITALAVNQ  334 (347)
Q Consensus       269 ~~~~--~~------~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~-~~~~~~~~---~h~~~V~~l~~~p  334 (347)
                      .+..  ..      .....+..+.++|..  +++.+.....|..+|..  ++... ..+.....   ..-.....|+|.+
T Consensus       154 ~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~--G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~  231 (248)
T PF06977_consen  154 DLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ--GRVVSSLSLDRGFHGLSKDIPQPEGIAFDP  231 (248)
T ss_dssp             --EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-T
T ss_pred             ceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC--CCEEEEEEeCCcccCcccccCCccEEEECC
Confidence            2111  11      123457888998874  67777788899888864  22111 11111111   1123578999999


Q ss_pred             CCCEEEEe
Q 043707          335 ESAVVYCG  342 (347)
Q Consensus       335 ~~~~l~sg  342 (347)
                      +|++.++.
T Consensus       232 ~G~LYIvs  239 (248)
T PF06977_consen  232 DGNLYIVS  239 (248)
T ss_dssp             T--EEEEE
T ss_pred             CCCEEEEc
Confidence            99766554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.53  E-value=0.24  Score=43.15  Aligned_cols=158  Identities=14%  Similarity=0.149  Sum_probs=88.8

Q ss_pred             EEeecCCEEEEecCCCcEEEEeCC-CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeeccccc
Q 043707          128 SLAASGDLLYTGSDSKNIRVWKNL-KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPT  206 (347)
Q Consensus       128 ~l~~~~~~l~tg~~dg~I~vwd~~-~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~  206 (347)
                      |....++.|+.|.++| +++++.. ........+...|..+...++-+.++.-+ |+.++++++..-...........+.
T Consensus         2 c~~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~   79 (275)
T PF00780_consen    2 CADSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK   79 (275)
T ss_pred             CcccCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence            3445678999999998 8999872 11111222334499999999877777665 5999999998654332111000000


Q ss_pred             ccceEEeccCCCeEEEEeecceeeeeecCCCeeEEE--EcCCCCEEEEEeCCCcEEEEeCCCC-----EEEEEEecCCCc
Q 043707          207 FKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLS--LNAEQGLLYSGSWDKTLKVWRISDC-----KCLESINAHDDA  279 (347)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~--~~~~~~~l~s~s~dg~i~vwdl~~~-----~~~~~~~~h~~~  279 (347)
                      ..                  ...........+...+  -...+...+.....++|.+|.....     +.++.+.. ...
T Consensus        80 ~~------------------~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~  140 (275)
T PF00780_consen   80 SR------------------SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDP  140 (275)
T ss_pred             cc------------------cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCC
Confidence            00                  0000111223333333  1123333333444568999887642     45566654 366


Q ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEEcccC
Q 043707          280 INSVVAGFDSLVFTGSADGTVKVWRRELQ  308 (347)
Q Consensus       280 v~~i~~~~~~~l~s~~~dg~I~vwd~~~~  308 (347)
                      +..+.|. +..|+.|.. +...+.|+.+.
T Consensus       141 ~~~i~~~-~~~i~v~~~-~~f~~idl~~~  167 (275)
T PF00780_consen  141 PSSIAFL-GNKICVGTS-KGFYLIDLNTG  167 (275)
T ss_pred             cEEEEEe-CCEEEEEeC-CceEEEecCCC
Confidence            8888888 445555554 44778888743

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.52  E-value=0.14  Score=43.34  Aligned_cols=103  Identities=15%  Similarity=0.213  Sum_probs=70.0

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEE
Q 043707          173 SNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYS  252 (347)
Q Consensus       173 ~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s  252 (347)
                      ..+++.|+..+.+.--|..+++.......+                                 ..+.+-+.- -|++++.
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg---------------------------------~RiE~sa~v-vgdfVV~   68 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG---------------------------------VRIECSAIV-VGDFVVL   68 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhC---------------------------------ceeeeeeEE-ECCEEEE
Confidence            457788888888888888877643332221                                 112221111 2677999


Q ss_pred             EeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCC
Q 043707          253 GSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQG  309 (347)
Q Consensus       253 ~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~  309 (347)
                      |+..|.+++.+.++|..+..+..-+.--..-...+++ ++..|+.|+..+.-|.++.+
T Consensus        69 GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~  126 (354)
T KOG4649|consen   69 GCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG  126 (354)
T ss_pred             EEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccc
Confidence            9999999999999998777776543322222345554 99999999999999987543

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.49  E-value=0.012  Score=48.47  Aligned_cols=63  Identities=22%  Similarity=0.223  Sum_probs=41.8

Q ss_pred             cCCEEEEecCCCcEEEEeCCCc---ceeeecCCCCeeEEEEe-CCCCEEEEEeCCCcEEEEecCCCC
Q 043707          132 SGDLLYTGSDSKNIRVWKNLKE---FSGFKSNSGLVKAIIIT-GDSNKIFTGHQDGKIRIWKVSRKN  194 (347)
Q Consensus       132 ~~~~l~tg~~dg~I~vwd~~~~---~~~~~~h~~~V~~l~~s-p~~~~l~s~~~Dg~I~vwd~~~~~  194 (347)
                      -+.-|+.|+.+|.|++|.....   ...+..-...|.++.-. .++.+.++++.||.||.|++.-.+
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k  135 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK  135 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCc
Confidence            4667899999999999986521   11222222334333322 245688999999999999987664

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.48  E-value=0.29  Score=43.88  Aligned_cols=151  Identities=16%  Similarity=0.169  Sum_probs=88.0

Q ss_pred             eccccEEEEeecCCEEEEecCCCcEEEEeCCCc--ceeeecC--CCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCc
Q 043707          121 RKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKE--FSGFKSN--SGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPS  196 (347)
Q Consensus       121 ~h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~~~--~~~~~~h--~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~  196 (347)
                      ..++.|+++..-+++|+.+.. +.|++|++...  +.....+  ...+.++....  ++|+.|.....|.++..+.....
T Consensus        86 ~~~g~V~ai~~~~~~lv~~~g-~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~--~~I~vgD~~~sv~~~~~~~~~~~  162 (321)
T PF03178_consen   86 EVKGPVTAICSFNGRLVVAVG-NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFK--NYILVGDAMKSVSLLRYDEENNK  162 (321)
T ss_dssp             EESS-EEEEEEETTEEEEEET-TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEET--TEEEEEESSSSEEEEEEETTTE-
T ss_pred             eecCcceEhhhhCCEEEEeec-CEEEEEEccCcccchhhheecceEEEEEEeccc--cEEEEEEcccCEEEEEEEccCCE
Confidence            457889999976666555553 68999984422  2222222  23566666654  49999998888888866542210


Q ss_pred             eeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC-------C--
Q 043707          197 VHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD-------C--  267 (347)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~-------~--  267 (347)
                      . ..+..                            -.....++++.+-++++.++.+..+|.+.++....       +  
T Consensus       163 l-~~va~----------------------------d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~  213 (321)
T PF03178_consen  163 L-ILVAR----------------------------DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDP  213 (321)
T ss_dssp             E-EEEEE----------------------------ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTT
T ss_pred             E-EEEEe----------------------------cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccc
Confidence            1 11100                            01344577888876667999999999999998752       1  


Q ss_pred             E--EEEEEecCCCcEEEE---EeCCC--C-------EEEEEeCCCcEEEEE
Q 043707          268 K--CLESINAHDDAINSV---VAGFD--S-------LVFTGSADGTVKVWR  304 (347)
Q Consensus       268 ~--~~~~~~~h~~~v~~i---~~~~~--~-------~l~s~~~dg~I~vwd  304 (347)
                      +  .+..+.. ...|+++   .+.|.  +       .++.++.+|.|-+.-
T Consensus       214 ~L~~~~~f~l-g~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~  263 (321)
T PF03178_consen  214 KLERISSFHL-GDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLI  263 (321)
T ss_dssp             BEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEE
T ss_pred             cceeEEEEEC-CCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEEE
Confidence            2  3334432 3557777   44441  1       378888999988543

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.44  E-value=0.15  Score=42.44  Aligned_cols=123  Identities=13%  Similarity=0.152  Sum_probs=77.2

Q ss_pred             CcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEE-EEEeCCCcEEEEe--cCCCCCceeeeecccccccceEEeccCCCe
Q 043707          143 KNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKI-FTGHQDGKIRIWK--VSRKNPSVHKRVGSLPTFKDYVKSSVNPKN  219 (347)
Q Consensus       143 g~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~~~Dg~I~vwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (347)
                      |.++.|-....+..+...-+--+.++|+.+.+.+ ++-+.+-+|.-||  ..++......                   .
T Consensus       139 g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~-------------------~  199 (310)
T KOG4499|consen  139 GELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRK-------------------V  199 (310)
T ss_pred             cEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcc-------------------e
Confidence            4455555544444444444555678898765544 4556777887788  4444322111                   1


Q ss_pred             EEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCC
Q 043707          220 YVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD  288 (347)
Q Consensus       220 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~  288 (347)
                      ++.++..+..   ++ -.--.++...+|.+.++.-..++|...|..+|+.+.+++.....|++++|.-.
T Consensus       200 i~dlrk~~~~---e~-~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  200 IFDLRKSQPF---ES-LEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             eEEeccCCCc---CC-CCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence            1222221110   11 11123455667888888888899999999999999999999999999999654

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.43  E-value=0.059  Score=49.57  Aligned_cols=110  Identities=14%  Similarity=0.174  Sum_probs=66.4

Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCE-------------------------------------------EEEEE
Q 043707          237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK-------------------------------------------CLESI  273 (347)
Q Consensus       237 ~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~-------------------------------------------~~~~~  273 (347)
                      .|+.++|.++...|++|...|.+.||.....+                                           +..-+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            47889999988889999999999988653211                                           22223


Q ss_pred             ecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhh-hh-ccCCcEEEEEEcc-----CC---CEEEEec
Q 043707          274 NAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQV-LL-KQENAITALAVNQ-----ES---AVVYCGS  343 (347)
Q Consensus       274 ~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~-~~-~h~~~V~~l~~~p-----~~---~~l~sgs  343 (347)
                      +...++|++++.+.-|++|.|..+|.+.|.|+|...-......... +. .....|+++.|.-     |+   -+|++|.
T Consensus        83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT  162 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT  162 (395)
T ss_dssp             ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred             eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence            3456889999998779999999999999999984322111111110 11 2345688888873     22   3566666


Q ss_pred             CCC
Q 043707          344 SDG  346 (347)
Q Consensus       344 ~DG  346 (347)
                      ..|
T Consensus       163 n~G  165 (395)
T PF08596_consen  163 NSG  165 (395)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            554

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.38  E-value=0.54  Score=40.25  Aligned_cols=153  Identities=10%  Similarity=0.100  Sum_probs=82.6

Q ss_pred             EEEEeec--CCEEEEecCCCcEEEEeCC---Cc-----ceee-----ecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEec
Q 043707          126 IYSLAAS--GDLLYTGSDSKNIRVWKNL---KE-----FSGF-----KSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKV  190 (347)
Q Consensus       126 V~~l~~~--~~~l~tg~~dg~I~vwd~~---~~-----~~~~-----~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~  190 (347)
                      .-.+.+-  +.++++--.++.+.+++..   +.     ...+     ..+...+..|+|.+.++.|+.+-+....+++.+
T Consensus        67 ~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~  146 (248)
T PF06977_consen   67 YEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEV  146 (248)
T ss_dssp             EEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEE
T ss_pred             ceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEE
Confidence            3444442  3345544458888888742   11     1111     124456999999998888888887777778877


Q ss_pred             CCCC---CceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCC
Q 043707          191 SRKN---PSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISD  266 (347)
Q Consensus       191 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwdl~~  266 (347)
                      ....   ............                        .......+..++++|. +++++....+..|.++| .+
T Consensus       147 ~~~~~~~~~~~~~~~~~~~------------------------~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~  201 (248)
T PF06977_consen  147 NGFPGGFDLFVSDDQDLDD------------------------DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQ  201 (248)
T ss_dssp             ESTT-SS--EEEE-HHHH-------------------------HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT
T ss_pred             ccccCccceeecccccccc------------------------ccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CC
Confidence            6521   100000000000                        0013455789999996 56677777788899999 67


Q ss_pred             CEEEEEEecCC---------CcEEEEEeCCCCEEEEEeCCCcEEEE
Q 043707          267 CKCLESINAHD---------DAINSVVAGFDSLVFTGSADGTVKVW  303 (347)
Q Consensus       267 ~~~~~~~~~h~---------~~v~~i~~~~~~~l~s~~~dg~I~vw  303 (347)
                      |+.+..+.-..         ...-.|++.++|.|+..++-+..++|
T Consensus       202 G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f  247 (248)
T PF06977_consen  202 GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF  247 (248)
T ss_dssp             --EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred             CCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence            88776664322         24678899999988877787766655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.25  E-value=0.19  Score=43.85  Aligned_cols=137  Identities=15%  Similarity=0.255  Sum_probs=79.2

Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEE
Q 043707          171 GDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLL  250 (347)
Q Consensus       171 p~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l  250 (347)
                      ..++.|+.|..+| |.++++.......  .+                               .+...|..+...++-+.|
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~--~i-------------------------------~~~~~I~ql~vl~~~~~l   50 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPT--RI-------------------------------LKLSSITQLSVLPELNLL   50 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccce--eE-------------------------------eecceEEEEEEecccCEE
Confidence            3567899999999 8889882221111  10                               133448899999987777


Q ss_pred             EEEeCCCcEEEEeCCCCEEEEEE--------------ecCCCcEEEEE--eCCCC-EEEEEeCCCcEEEEEcccCCccce
Q 043707          251 YSGSWDKTLKVWRISDCKCLESI--------------NAHDDAINSVV--AGFDS-LVFTGSADGTVKVWRRELQGKGTK  313 (347)
Q Consensus       251 ~s~s~dg~i~vwdl~~~~~~~~~--------------~~h~~~v~~i~--~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~  313 (347)
                      ++-+ |+.+.++++.........              ......+...+  -...+ ..++.....+|.+|..........
T Consensus        51 lvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~  129 (275)
T PF00780_consen   51 LVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS  129 (275)
T ss_pred             EEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc
Confidence            7766 599999999765443311              01122343333  11222 444444555999998874322110


Q ss_pred             eeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          314 HFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       314 ~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                       ...+.+ .-...+.+++|.  ++.|+.|..++
T Consensus       130 -~~~ke~-~lp~~~~~i~~~--~~~i~v~~~~~  158 (275)
T PF00780_consen  130 -KLLKEI-SLPDPPSSIAFL--GNKICVGTSKG  158 (275)
T ss_pred             -ceeEEE-EcCCCcEEEEEe--CCEEEEEeCCc
Confidence             122222 123678899998  56677765554

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.16  E-value=0.02  Score=34.99  Aligned_cols=31  Identities=16%  Similarity=0.351  Sum_probs=28.2

Q ss_pred             CCCeeEEEEeCCCCEEEEEeCCCcEEEEecC
Q 043707          161 SGLVKAIIITGDSNKIFTGHQDGKIRIWKVS  191 (347)
Q Consensus       161 ~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~  191 (347)
                      ...|.+++|+|....||.+..||.|.+++++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            3569999999999999999999999999994

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.13  E-value=0.24  Score=49.23  Aligned_cols=139  Identities=10%  Similarity=0.113  Sum_probs=87.3

Q ss_pred             cCCCcEEEEeCC--CcceeeecCCCC-eeEEEEeC-----CCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceE
Q 043707          140 SDSKNIRVWKNL--KEFSGFKSNSGL-VKAIIITG-----DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYV  211 (347)
Q Consensus       140 ~~dg~I~vwd~~--~~~~~~~~h~~~-V~~l~~sp-----~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~  211 (347)
                      .....|+-.|+.  +.+..+..|... |..++=..     .....+.|-.+..|..||.+-........ .         
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~-~---------  570 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS-Q---------  570 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeec-c---------
Confidence            444566666654  446666666543 55443211     13356778888899999988542110000 0         


Q ss_pred             EeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEE
Q 043707          212 KSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLV  291 (347)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l  291 (347)
                                       ..........+|++-..+| +||+|+.+|.|++||--..+....|.+-..+|..|..+.||..
T Consensus       571 -----------------~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkw  632 (794)
T PF08553_consen  571 -----------------SKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKW  632 (794)
T ss_pred             -----------------ccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcE
Confidence                             0001244567788776654 7899999999999994322333445666889999999999954


Q ss_pred             EEEeCCCcEEEEEcc
Q 043707          292 FTGSADGTVKVWRRE  306 (347)
Q Consensus       292 ~s~~~dg~I~vwd~~  306 (347)
                      +.|..+..|.+++..
T Consensus       633 ilaTc~tyLlLi~t~  647 (794)
T PF08553_consen  633 ILATCKTYLLLIDTL  647 (794)
T ss_pred             EEEeecceEEEEEEe
Confidence            455557788888864

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.99  E-value=0.12  Score=52.27  Aligned_cols=162  Identities=10%  Similarity=-0.012  Sum_probs=95.7

Q ss_pred             eeecCC-CCeeEEEEeCCCCEEEEE--eCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeee
Q 043707          156 GFKSNS-GLVKAIIITGDSNKIFTG--HQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKI  232 (347)
Q Consensus       156 ~~~~h~-~~V~~l~~sp~~~~l~s~--~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (347)
                      .+..|. -+|..+...+|+...++.  +.+-.|..+|++.-..........+..                     .....
T Consensus        94 t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~---------------------s~ts~  152 (1405)
T KOG3630|consen   94 TFKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKN---------------------SATSF  152 (1405)
T ss_pred             ceeeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhcccccc---------------------ccchh
Confidence            344443 356667777776554433  344478899997653222111000000                     00001


Q ss_pred             ecCCCeeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCEE-EEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCC
Q 043707          233 RHYDAVSCLSLNAEQ-GLLYSGSWDKTLKVWRISDCKC-LESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQG  309 (347)
Q Consensus       233 ~h~~~V~~l~~~~~~-~~l~s~s~dg~i~vwdl~~~~~-~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~  309 (347)
                      .......++.|+|.- ...+....|+.|+|..+..... +.++. -....++++|+|.| .++.|-..|++.-|....+.
T Consensus       153 ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~lei  231 (1405)
T KOG3630|consen  153 EKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEI  231 (1405)
T ss_pred             ccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccce
Confidence            133446788899863 3455666799999888764432 33333 34568999999998 89999999999999876443


Q ss_pred             ccceeeehhhhhccCCcEEEEEEccCCCEEEEe
Q 043707          310 KGTKHFLAQVLLKQENAITALAVNQESAVVYCG  342 (347)
Q Consensus       310 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sg  342 (347)
                      +.....+...   -...|.+|+|-....+|++=
T Consensus       232 k~~ip~Pp~~---e~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  232 KSEIPEPPVE---ENYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             eecccCCCcC---CCcceeEEEEecceeEEEEe
Confidence            2111111111   14689999999887777653

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=95.81  E-value=0.94  Score=41.69  Aligned_cols=144  Identities=17%  Similarity=0.192  Sum_probs=94.5

Q ss_pred             eeEEEEeCCCCE-EEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEE
Q 043707          164 VKAIIITGDSNK-IFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLS  242 (347)
Q Consensus       164 V~~l~~sp~~~~-l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  242 (347)
                      -..+++++.+.. +++...++.|.+.|....+......++                                 .....++
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG---------------------------------~~P~~~~  122 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG---------------------------------LGPVGLA  122 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec---------------------------------cCCceEE
Confidence            456788887774 444455689999996665433333222                                 1456789


Q ss_pred             EcCCCCEEEEEeC---CCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEE-EEeCCCcEEEEEcccCCccceeeeh
Q 043707          243 LNAEQGLLYSGSW---DKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF-TGSADGTVKVWRRELQGKGTKHFLA  317 (347)
Q Consensus       243 ~~~~~~~l~s~s~---dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~-s~~~dg~I~vwd~~~~~~~~~~~~~  317 (347)
                      +.++++.++.+..   ++++.+.|-.+.+.+.....-..+ ..+++.|++ .++ +-..++.|.+.|........ . ..
T Consensus       123 ~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~-~~  199 (381)
T COG3391         123 VDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-G-SV  199 (381)
T ss_pred             ECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-c-cc
Confidence            9999987777765   688999999999888886654445 788999998 344 44579999999976432100 0 00


Q ss_pred             hhhhccCCcEEEEEEccCCCEEEEec
Q 043707          318 QVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       318 ~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                      .....-......+++.|++..++..-
T Consensus       200 ~~~~~~~~~P~~i~v~~~g~~~yV~~  225 (381)
T COG3391         200 GSLVGVGTGPAGIAVDPDGNRVYVAN  225 (381)
T ss_pred             ccccccCCCCceEEECCCCCEEEEEe
Confidence            01122233456888999998766543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.76  E-value=1.2  Score=39.74  Aligned_cols=140  Identities=14%  Similarity=0.227  Sum_probs=83.4

Q ss_pred             CcEEEEeCCCc-ceeeecCCCCeeEEEEeCCCCEEEEEe----------CCCcEEEEecCCCCCceeeeecccccccceE
Q 043707          143 KNIRVWKNLKE-FSGFKSNSGLVKAIIITGDSNKIFTGH----------QDGKIRIWKVSRKNPSVHKRVGSLPTFKDYV  211 (347)
Q Consensus       143 g~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s~~----------~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~  211 (347)
                      +.|+|+|..+. +.... ..+..-.+..+|+++.++++.          ..-.|.+||..+-.......+..-+...   
T Consensus        17 ~rv~viD~d~~k~lGmi-~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~---   92 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMI-DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ---   92 (342)
T ss_dssp             EEEEEEETTTTEEEEEE-EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-----
T ss_pred             ceEEEEECCCCcEEEEe-ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe---
Confidence            36778874432 21111 123344567899999888754          2346889999887655444443211100   


Q ss_pred             EeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEe--CCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC
Q 043707          212 KSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGS--WDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS  289 (347)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s--~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~  289 (347)
                                            .......++++.++++++...  -.-.|.|-|+...+.+..+.....  ..+.=..+.
T Consensus        93 ----------------------~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC--~~iyP~~~~  148 (342)
T PF06433_consen   93 ----------------------VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC--WLIYPSGNR  148 (342)
T ss_dssp             ----------------------BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE--EEEEEEETT
T ss_pred             ----------------------ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE--EEEEecCCC
Confidence                                  111233467888998888754  356699999999999888874322  222212233


Q ss_pred             EEEEEeCCCcEEEEEcccCCc
Q 043707          290 LVFTGSADGTVKVWRRELQGK  310 (347)
Q Consensus       290 ~l~s~~~dg~I~vwd~~~~~~  310 (347)
                      -|.+-|.||.+.-..+...++
T Consensus       149 ~F~~lC~DGsl~~v~Ld~~Gk  169 (342)
T PF06433_consen  149 GFSMLCGDGSLLTVTLDADGK  169 (342)
T ss_dssp             EEEEEETTSCEEEEEETSTSS
T ss_pred             ceEEEecCCceEEEEECCCCC
Confidence            677888899998888876555

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=95.69  E-value=0.29  Score=45.51  Aligned_cols=111  Identities=14%  Similarity=0.142  Sum_probs=59.8

Q ss_pred             CCeeEEEEeCCCCEEEE-EeCCCc--EEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCe
Q 043707          162 GLVKAIIITGDSNKIFT-GHQDGK--IRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAV  238 (347)
Q Consensus       162 ~~V~~l~~sp~~~~l~s-~~~Dg~--I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  238 (347)
                      +.-..-+|+|||++|+- ...||.  |.+.|+..++...   +.                              ...+.-
T Consensus       238 g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~---Lt------------------------------~~~gi~  284 (425)
T COG0823         238 GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR---LT------------------------------NGFGIN  284 (425)
T ss_pred             CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee---cc------------------------------cCCccc
Confidence            34445689999987654 456666  4555666554211   11                              011112


Q ss_pred             eEEEEcCCCCEEEEEe-CCCc--EEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEE-EeCCCc--EEEEEcc
Q 043707          239 SCLSLNAEQGLLYSGS-WDKT--LKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFT-GSADGT--VKVWRRE  306 (347)
Q Consensus       239 ~~l~~~~~~~~l~s~s-~dg~--i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s-~~~dg~--I~vwd~~  306 (347)
                      ..=.|+|+|+.++-.+ ..|.  |.++++..... ..+......-..-.|+||| +|+. ...+|.  |.+.|+.
T Consensus       285 ~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~  358 (425)
T COG0823         285 TSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLA  358 (425)
T ss_pred             cCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccC
Confidence            2457899998776655 4555  45555544433 3443333322356789998 4443 333555  4455544

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.60  E-value=1.5  Score=38.75  Aligned_cols=170  Identities=14%  Similarity=0.149  Sum_probs=82.3

Q ss_pred             ecCCCcEEEEeC-CCccee-eecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccC
Q 043707          139 GSDSKNIRVWKN-LKEFSG-FKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVN  216 (347)
Q Consensus       139 g~~dg~I~vwd~-~~~~~~-~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (347)
                      .+..|.|+.-.. .+..+. ...-.+.+..+.-+++|++++++..-..+.-||--...-..+.+                
T Consensus       120 ~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r----------------  183 (302)
T PF14870_consen  120 AGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNR----------------  183 (302)
T ss_dssp             EETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE-----------------
T ss_pred             EcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEcc----------------
Confidence            344455555432 222222 23334678889889999988888766666677654322111111                


Q ss_pred             CCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC-CCCEEEEE----EecCCCcEEEEEeCCCCEE
Q 043707          217 PKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI-SDCKCLES----INAHDDAINSVVAGFDSLV  291 (347)
Q Consensus       217 ~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl-~~~~~~~~----~~~h~~~v~~i~~~~~~~l  291 (347)
                                      .....|..|.|.|++.+.+.+ ..|.|++=+. ...+....    +....-.+..++|.+++.+
T Consensus       184 ----------------~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~  246 (302)
T PF14870_consen  184 ----------------NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEI  246 (302)
T ss_dssp             -----------------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-E
T ss_pred             ----------------CccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCE
Confidence                            145679999999998776655 7888888872 22222222    1112234788999988866


Q ss_pred             EEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          292 FTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       292 ~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      .+++..|.+.+  -..+++  ..........-...+..|.|..+.+-++.| .||
T Consensus       247 wa~gg~G~l~~--S~DgGk--tW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G  296 (302)
T PF14870_consen  247 WAVGGSGTLLV--STDGGK--TWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDG  296 (302)
T ss_dssp             EEEESTT-EEE--ESSTTS--S-EE-GGGTTSSS---EEEEEETTEEEEE--STT
T ss_pred             EEEeCCccEEE--eCCCCc--cceECccccCCCCceEEEEEcCCCceEEEC-CCc
Confidence            66666665532  223333  333333333335568899998765555554 344

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.43  E-value=0.34  Score=45.74  Aligned_cols=105  Identities=13%  Similarity=0.120  Sum_probs=62.6

Q ss_pred             ecCCCeeEEEEcCC----CCEEEEEeCCCcEEEEeCC-----CCEEEEEEecC-CC----cEEEEEeCCCC-EEEEEeCC
Q 043707          233 RHYDAVSCLSLNAE----QGLLYSGSWDKTLKVWRIS-----DCKCLESINAH-DD----AINSVVAGFDS-LVFTGSAD  297 (347)
Q Consensus       233 ~h~~~V~~l~~~~~----~~~l~s~s~dg~i~vwdl~-----~~~~~~~~~~h-~~----~v~~i~~~~~~-~l~s~~~d  297 (347)
                      +....|..++|.|-    ..-|++......|.||.+.     ..+.+..-..+ ..    --..+.|+|.. .|+.-...
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~  133 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR  133 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence            46677899999984    3244555567889999985     22333222211 11    12346799987 55444444


Q ss_pred             CcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEe
Q 043707          298 GTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCG  342 (347)
Q Consensus       298 g~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sg  342 (347)
                      ..=.+++++....     .+..-....+-|.|.+|.+||+.|+.+
T Consensus       134 dvSV~~sV~~d~s-----rVkaDi~~~G~IhCACWT~DG~RLVVA  173 (671)
T PF15390_consen  134 DVSVLPSVHCDSS-----RVKADIKTSGLIHCACWTKDGQRLVVA  173 (671)
T ss_pred             ceeEeeeeeeCCc-----eEEEeccCCceEEEEEecCcCCEEEEE
Confidence            4434566654332     222222456789999999999877665

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.24  E-value=1.2  Score=39.51  Aligned_cols=126  Identities=11%  Similarity=0.110  Sum_probs=75.5

Q ss_pred             EEEEe-CCCcceeeecCCCCeeEEEEeCCCCEEEEEeC-CCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEE
Q 043707          145 IRVWK-NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQ-DGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVE  222 (347)
Q Consensus       145 I~vwd-~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~-Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (347)
                      |+..+ .....+.+..+-..-+.|+|+||++.|+.+-. .+.|.-|++...........                     
T Consensus       145 lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~---------------------  203 (307)
T COG3386         145 LYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRR---------------------  203 (307)
T ss_pred             EEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcc---------------------
Confidence            44444 22333334444455678999999987777754 47787777763110000000                     


Q ss_pred             EeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCC-cEEEEeCCCCEEEEEEecCCCcEEEEEeCC-CC--EEEEEeC
Q 043707          223 VRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDK-TLKVWRISDCKCLESINAHDDAINSVVAGF-DS--LVFTGSA  296 (347)
Q Consensus       223 ~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg-~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~-~~--~l~s~~~  296 (347)
                          .........+..-.++...+|.+-+++-++| .|.+|+.. ++.+..++.....+++++|-- +.  +++++..
T Consensus       204 ----~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~  276 (307)
T COG3386         204 ----GFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSAR  276 (307)
T ss_pred             ----eEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence                0000001334555677888888776665554 89999987 999999988877788888854 32  4444443

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.11  E-value=0.74  Score=42.82  Aligned_cols=105  Identities=16%  Similarity=0.125  Sum_probs=62.5

Q ss_pred             eeEEEEcCCCCEEEEE-eCCC----cEEEEeCCCCEEEEEE-ecCCCcEEEEEeCCCC--EEEEEeCC----------Cc
Q 043707          238 VSCLSLNAEQGLLYSG-SWDK----TLKVWRISDCKCLESI-NAHDDAINSVVAGFDS--LVFTGSAD----------GT  299 (347)
Q Consensus       238 V~~l~~~~~~~~l~s~-s~dg----~i~vwdl~~~~~~~~~-~~h~~~v~~i~~~~~~--~l~s~~~d----------g~  299 (347)
                      +..+.++|++++++.+ +..|    +|+++|+++++.+... ...  ....+.|.+++  ++++...+          ..
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            3457889999988765 3334    4999999999876543 321  12338999986  55554333          23


Q ss_pred             EEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          300 VKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       300 I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      |+.|++.+...  ...++............+..++++++|+..+..+
T Consensus       204 v~~~~~gt~~~--~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~  248 (414)
T PF02897_consen  204 VYRHKLGTPQS--EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSG  248 (414)
T ss_dssp             EEEEETTS-GG--G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESS
T ss_pred             EEEEECCCChH--hCeeEEeecCCCcEEEEEEecCcccEEEEEEEcc
Confidence            67777754332  1112222222222367899999999988765544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=94.99  E-value=1.9  Score=41.19  Aligned_cols=55  Identities=18%  Similarity=0.156  Sum_probs=34.9

Q ss_pred             CCCcEEEEeCCCCEEEEEEecCC--------CcE--EEEEeCCCCEEEEEeCCCcEEEEEcccCCc
Q 043707          255 WDKTLKVWRISDCKCLESINAHD--------DAI--NSVVAGFDSLVFTGSADGTVKVWRRELQGK  310 (347)
Q Consensus       255 ~dg~i~vwdl~~~~~~~~~~~h~--------~~v--~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~  310 (347)
                      .+|.+.-.|+.+++.+-+.....        ...  ..+.. .++.|++++.||.|+.+|.++++.
T Consensus       364 ~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~-~g~~v~~g~~dG~l~ald~~tG~~  428 (488)
T cd00216         364 GKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT-AGNLVFAGAADGYFRAFDATTGKE  428 (488)
T ss_pred             CceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe-cCCeEEEECCCCeEEEEECCCCce
Confidence            35677777777777665554320        111  11222 245888899999999999987654

The alignment model contains an 8-bladed beta-propeller.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.96  E-value=0.97  Score=43.92  Aligned_cols=106  Identities=13%  Similarity=0.094  Sum_probs=65.9

Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEe-cCCCcEEEEEeC--CCC-EEEEEeCCCcEEEEEccc---CCcc
Q 043707          239 SCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN-AHDDAINSVVAG--FDS-LVFTGSADGTVKVWRREL---QGKG  311 (347)
Q Consensus       239 ~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~-~h~~~v~~i~~~--~~~-~l~s~~~dg~I~vwd~~~---~~~~  311 (347)
                      .-+.-+.-++..++-+...++.|||.+.+.....-. ...+.|..+.|.  |++ .+++.|..+.|.++.-..   ....
T Consensus        33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~  112 (631)
T PF12234_consen   33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKG  112 (631)
T ss_pred             ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCC
Confidence            334444444444444445679999999887543332 346789999885  455 777778888998885421   1111


Q ss_pred             ceeeehhhh--hccC-CcEEEEEEccCCCEEEEecC
Q 043707          312 TKHFLAQVL--LKQE-NAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       312 ~~~~~~~~~--~~h~-~~V~~l~~~p~~~~l~sgs~  344 (347)
                      ....++..+  ..|. .+|.+..|.++|.+++.+|.
T Consensus       113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN  148 (631)
T PF12234_consen  113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN  148 (631)
T ss_pred             cccceeEEEEeecCCCCCccceeEecCCeEEEEeCC
Confidence            222222222  2333 57999999999988877653

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.95  E-value=2.5  Score=37.43  Aligned_cols=107  Identities=11%  Similarity=0.095  Sum_probs=59.8

Q ss_pred             CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC--CEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccc
Q 043707          235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD--CKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGT  312 (347)
Q Consensus       235 ~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~--~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~  312 (347)
                      ...+..+.-.+++.+++++.....+.-||--.  .++..  +.-...|..|.|.|++.|......|.|++=+......  
T Consensus       144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~--r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~--  219 (302)
T PF14870_consen  144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHN--RNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGE--  219 (302)
T ss_dssp             ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE----SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEE--
T ss_pred             cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEc--cCccceehhceecCCCCEEEEeCCcEEEEccCCCCcc--
Confidence            35677888899999998887666666787543  23322  2345789999999998665566999998887221111  


Q ss_pred             eeee-hhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707          313 KHFL-AQVLLKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       313 ~~~~-~~~~~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                      .... ...+....-.+.+++|.++....++|+..
T Consensus       220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G  253 (302)
T PF14870_consen  220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG  253 (302)
T ss_dssp             EE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred             ccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence            1111 11122234458999999998888877753

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=94.95  E-value=3  Score=38.40  Aligned_cols=172  Identities=13%  Similarity=0.194  Sum_probs=103.4

Q ss_pred             ecCC-EEEEecCCCcEEEEeCCCc-ceeeecCCCCeeEEEEeCCCCEEEEEeC---CCcEEEEecCCCCCceeeeecccc
Q 043707          131 ASGD-LLYTGSDSKNIRVWKNLKE-FSGFKSNSGLVKAIIITGDSNKIFTGHQ---DGKIRIWKVSRKNPSVHKRVGSLP  205 (347)
Q Consensus       131 ~~~~-~l~tg~~dg~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s~~~---Dg~I~vwd~~~~~~~~~~~~~~~~  205 (347)
                      ..+. .+++...+..|.+.|.... ......-......+++++++..+..+..   ++++.+.|-.+.+.......+   
T Consensus        83 ~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG---  159 (381)
T COG3391          83 PAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG---  159 (381)
T ss_pred             CCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC---
Confidence            3444 4555555688999884322 1111112226778999999887777765   577777777766543332221   


Q ss_pred             cccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEe-CCCcEEEEeCCCCEEEE-E----EecCCCc
Q 043707          206 TFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDCKCLE-S----INAHDDA  279 (347)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~vwdl~~~~~~~-~----~~~h~~~  279 (347)
                                                   ..+ ..+++.|++..++... .+++|.+.|........ .    ... ...
T Consensus       160 -----------------------------~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~-~~~  208 (381)
T COG3391         160 -----------------------------NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV-GTG  208 (381)
T ss_pred             -----------------------------CCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccccc-CCC
Confidence                                         122 7799999999766665 68899999977665553 1    221 223


Q ss_pred             EEEEEeCCCC-EEEEEe-C--CCcEEEEEcccCCccceeeehh-hhhccCCcEEEEEEccCCCEEEEe
Q 043707          280 INSVVAGFDS-LVFTGS-A--DGTVKVWRRELQGKGTKHFLAQ-VLLKQENAITALAVNQESAVVYCG  342 (347)
Q Consensus       280 v~~i~~~~~~-~l~s~~-~--dg~I~vwd~~~~~~~~~~~~~~-~~~~h~~~V~~l~~~p~~~~l~sg  342 (347)
                      ...+.+.+++ ++.... .  ++.+...|......     ... ...+.. ....+.++|+|..+++.
T Consensus       209 P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v-----~~~~~~~~~~-~~~~v~~~p~g~~~yv~  270 (381)
T COG3391         209 PAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV-----TATDLPVGSG-APRGVAVDPAGKAAYVA  270 (381)
T ss_pred             CceEEECCCCCEEEEEeccCCCceEEEEeCCCceE-----EEeccccccC-CCCceeECCCCCEEEEE
Confidence            4567888888 333332 2  25888888874432     111 111112 45678888888887776

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=94.94  E-value=2.5  Score=37.52  Aligned_cols=141  Identities=8%  Similarity=0.098  Sum_probs=74.1

Q ss_pred             EEEEecCCCcEEEEeCCCc-ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCc-eeeeecccccccceEE
Q 043707          135 LLYTGSDSKNIRVWKNLKE-FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPS-VHKRVGSLPTFKDYVK  212 (347)
Q Consensus       135 ~l~tg~~dg~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~-~~~~~~~~~~~~~~~~  212 (347)
                      ++.+--..+.|.-|+.... ...+. +.+.+.++.....+..|+++..  -+++++.+.+... .......  .      
T Consensus        39 L~w~DI~~~~i~r~~~~~g~~~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~--~------  107 (307)
T COG3386          39 LLWVDILGGRIHRLDPETGKKRVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED--G------  107 (307)
T ss_pred             EEEEeCCCCeEEEecCCcCceEEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC--C------
Confidence            4555555667777776533 33333 3334455544444446665543  3556676544321 1111000  0      


Q ss_pred             eccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC---------CCcEEEEeCC-CCEEEEEEecCCCcEEE
Q 043707          213 SSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW---------DKTLKVWRIS-DCKCLESINAHDDAINS  282 (347)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---------dg~i~vwdl~-~~~~~~~~~~h~~~v~~  282 (347)
                                          .-....+.+...|+|.+.++...         -..-.||.+. .+..++.+..+-..-+.
T Consensus       108 --------------------~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NG  167 (307)
T COG3386         108 --------------------LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNG  167 (307)
T ss_pred             --------------------CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCc
Confidence                                01123345566677665554332         0111355544 56666666665566788


Q ss_pred             EEeCCCC-EEE-EEeCCCcEEEEEcc
Q 043707          283 VVAGFDS-LVF-TGSADGTVKVWRRE  306 (347)
Q Consensus       283 i~~~~~~-~l~-s~~~dg~I~vwd~~  306 (347)
                      |+|+||+ .|+ +=+..+.|.-|++.
T Consensus       168 la~SpDg~tly~aDT~~~~i~r~~~d  193 (307)
T COG3386         168 LAFSPDGKTLYVADTPANRIHRYDLD  193 (307)
T ss_pred             eEECCCCCEEEEEeCCCCeEEEEecC
Confidence            9999998 444 44556888888876

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.91  E-value=0.9  Score=44.11  Aligned_cols=74  Identities=14%  Similarity=0.192  Sum_probs=52.1

Q ss_pred             cCCCeeEEEEc--CCCCEEEEEeCCCcEEEEeCC---------CCEEEEEE--ecCC-CcEEEEEeCCCCEEEEEeCCCc
Q 043707          234 HYDAVSCLSLN--AEQGLLYSGSWDKTLKVWRIS---------DCKCLESI--NAHD-DAINSVVAGFDSLVFTGSADGT  299 (347)
Q Consensus       234 h~~~V~~l~~~--~~~~~l~s~s~dg~i~vwdl~---------~~~~~~~~--~~h~-~~v~~i~~~~~~~l~s~~~dg~  299 (347)
                      ..+.|..+.|.  |+++.+++-+..+.|.+|--.         ...++..+  ..|. .+|.+..|.++|.+++|+ +++
T Consensus        71 ~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNq  149 (631)
T PF12234_consen   71 EDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQ  149 (631)
T ss_pred             CCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCE
Confidence            56788889886  478888888888899988531         12234433  2333 578899999999777765 568


Q ss_pred             EEEEEcccC
Q 043707          300 VKVWRRELQ  308 (347)
Q Consensus       300 I~vwd~~~~  308 (347)
                      +.|+|-...
T Consensus       150 lfv~dk~~~  158 (631)
T PF12234_consen  150 LFVFDKWLD  158 (631)
T ss_pred             EEEECCCcC
Confidence            888877543

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PRK02888 nitrous-oxide reductase; Validated

Probab=94.90  E-value=1.1  Score=43.32  Aligned_cols=112  Identities=11%  Similarity=0.125  Sum_probs=71.6

Q ss_pred             cCCEEEEecCCCcEEEEeCCC------cceeeecCCCCeeEEEEeCCCCEEEEEe-CCCcEEEEecCCCCCceeeeeccc
Q 043707          132 SGDLLYTGSDSKNIRVWKNLK------EFSGFKSNSGLVKAIIITGDSNKIFTGH-QDGKIRIWKVSRKNPSVHKRVGSL  204 (347)
Q Consensus       132 ~~~~l~tg~~dg~I~vwd~~~------~~~~~~~h~~~V~~l~~sp~~~~l~s~~-~Dg~I~vwd~~~~~~~~~~~~~~~  204 (347)
                      +|++...+  +++|.+.|..+      .+..+-.-......+.++|||+++++++ .+.+|.|.|+.+.+......+.  
T Consensus       287 dGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~--  362 (635)
T PRK02888        287 AGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK--  362 (635)
T ss_pred             CCCEEEEC--CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC--
Confidence            46655553  56899999665      2333333456788999999999877665 5899999999876532211110  


Q ss_pred             ccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 043707          205 PTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD  266 (347)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~  266 (347)
                        ..+.+                 .....-...-...+|.++|+.+.+-.-|..|..|++.+
T Consensus       363 --~~~~v-----------------vaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        363 --PRDAV-----------------VAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             --ccceE-----------------EEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence              00000                 00001122334578899988888888899999999875

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.78  E-value=0.0034  Score=57.20  Aligned_cols=142  Identities=11%  Similarity=0.166  Sum_probs=99.6

Q ss_pred             eecCCEEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEE-EEeCCCcEEEEecCCCCCceeeeeccccccc
Q 043707          130 AASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIF-TGHQDGKIRIWKVSRKNPSVHKRVGSLPTFK  208 (347)
Q Consensus       130 ~~~~~~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~  208 (347)
                      .+.+.-++.++.+..+..||.......-..-.+...+++|..++..++ .+...+.+.+||+.+........-+      
T Consensus        43 ~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg------  116 (615)
T KOG2247|consen   43 RPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG------  116 (615)
T ss_pred             ecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC------
Confidence            345555777788888889986554433333456677889988777644 4567789999999876422111111      


Q ss_pred             ceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCC
Q 043707          209 DYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD  288 (347)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~  288 (347)
                                              .|....  +.|++....++.+-..|.+.|+...+.+.+-..-.|...+.++++.++
T Consensus       117 ------------------------~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lE  170 (615)
T KOG2247|consen  117 ------------------------TSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLE  170 (615)
T ss_pred             ------------------------cchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEeccc
Confidence                                    122222  678888888888888999999998877766666558889999999999


Q ss_pred             CEEEEEeCCCcEEEE
Q 043707          289 SLVFTGSADGTVKVW  303 (347)
Q Consensus       289 ~~l~s~~~dg~I~vw  303 (347)
                      ++.+.++.|..+.+-
T Consensus       171 d~vil~dcd~~L~v~  185 (615)
T KOG2247|consen  171 DYVILCDCDNTLSVT  185 (615)
T ss_pred             ceeeecCcHHHHHHh
Confidence            988888777655433

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.72  E-value=1.4  Score=40.41  Aligned_cols=55  Identities=18%  Similarity=0.281  Sum_probs=29.5

Q ss_pred             CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC-------CEEE-EEEec----CCCcEEEEEeCCCCEEE
Q 043707          236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISD-------CKCL-ESINA----HDDAINSVVAGFDSLVF  292 (347)
Q Consensus       236 ~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~-------~~~~-~~~~~----h~~~v~~i~~~~~~~l~  292 (347)
                      .....|++.+++  |++++....+++.|...       .+.+ ..+..    +......+.|.|||.|+
T Consensus        72 ~~p~Gi~~~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LY  138 (367)
T TIGR02604        72 SMVTGLAVAVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLY  138 (367)
T ss_pred             CCccceeEecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEE
Confidence            345778888887  44445444333434421       1122 22322    23457789999998443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.58  E-value=1.8  Score=40.20  Aligned_cols=112  Identities=11%  Similarity=0.149  Sum_probs=64.0

Q ss_pred             CeeEEEEeCCCCEEEEE-eCCC----cEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCC
Q 043707          163 LVKAIIITGDSNKIFTG-HQDG----KIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA  237 (347)
Q Consensus       163 ~V~~l~~sp~~~~l~s~-~~Dg----~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  237 (347)
                      .+..+.++|++++++-+ +..|    .|++.|+.+++.......                                . ..
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~--------------------------------~-~~  171 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE--------------------------------N-PK  171 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE--------------------------------E-EE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc--------------------------------c-cc
Confidence            34467889999987755 3444    499999998853221110                                0 11


Q ss_pred             eeEEEEcCCCCEEEEEeCCC-----------cEEEEeCCCCEE--EEEEecCCCc--EEEEEeCCCC-E-EEEEeCC---
Q 043707          238 VSCLSLNAEQGLLYSGSWDK-----------TLKVWRISDCKC--LESINAHDDA--INSVVAGFDS-L-VFTGSAD---  297 (347)
Q Consensus       238 V~~l~~~~~~~~l~s~s~dg-----------~i~vwdl~~~~~--~~~~~~h~~~--v~~i~~~~~~-~-l~s~~~d---  297 (347)
                      ...+.|.+++..|+....+.           .|+.|++.+...  ...+......  ...+..++|+ + ++.....   
T Consensus       172 ~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~  251 (414)
T PF02897_consen  172 FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSE  251 (414)
T ss_dssp             SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSE
T ss_pred             cceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccC
Confidence            12389999977766554433           277888766532  2334433332  5677888887 3 3333333   


Q ss_pred             CcEEEEEccc
Q 043707          298 GTVKVWRREL  307 (347)
Q Consensus       298 g~I~vwd~~~  307 (347)
                      ..|.+.++..
T Consensus       252 s~v~~~d~~~  261 (414)
T PF02897_consen  252 SEVYLLDLDD  261 (414)
T ss_dssp             EEEEEEECCC
T ss_pred             CeEEEEeccc
Confidence            3567777764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.44  E-value=1.2  Score=41.63  Aligned_cols=144  Identities=14%  Similarity=0.165  Sum_probs=86.9

Q ss_pred             EEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCC-------EEEEEeCCCcEEEEecCCCCCceeeeeccccc
Q 043707          136 LYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSN-------KIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPT  206 (347)
Q Consensus       136 l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~-------~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~  206 (347)
                      |.++..-..++-.|+.  +.+..+.-+.. |.-+.+.|+..       .-+.|-.|..|.-||.+-.......... .  
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q-~--  424 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ-S--  424 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee-c--
Confidence            3444444445555543  33555555554 66677777542       2345666788888988743221000000 0  


Q ss_pred             ccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeC
Q 043707          207 FKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAG  286 (347)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~  286 (347)
                                             ..........|.+--.+ .++++|+.+|.|++||--..+....|.+-..+|..|..+
T Consensus       425 -----------------------kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvt  480 (644)
T KOG2395|consen  425 -----------------------KQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVT  480 (644)
T ss_pred             -----------------------cccccccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEee
Confidence                                   00012234455554444 589999999999999963323344567788899999999


Q ss_pred             CCCEEEEEeCCCcEEEEEccc
Q 043707          287 FDSLVFTGSADGTVKVWRREL  307 (347)
Q Consensus       287 ~~~~l~s~~~dg~I~vwd~~~  307 (347)
                      .+|..+.|..+..+.+-++..
T Consensus       481 adGKwil~Tc~tyLlLi~t~~  501 (644)
T KOG2395|consen  481 ADGKWILATCKTYLLLIDTLI  501 (644)
T ss_pred             ccCcEEEEecccEEEEEEEec
Confidence            999666666788888888764

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.29  E-value=0.014  Score=57.05  Aligned_cols=59  Identities=19%  Similarity=0.241  Sum_probs=42.8

Q ss_pred             CCEEEEecCCCcEEEEeCCCc-ceeeecCCCCeeEEE-----------EeCCCCEEEEEeCCCcEEEEecC
Q 043707          133 GDLLYTGSDSKNIRVWKNLKE-FSGFKSNSGLVKAII-----------ITGDSNKIFTGHQDGKIRIWKVS  191 (347)
Q Consensus       133 ~~~l~tg~~dg~I~vwd~~~~-~~~~~~h~~~V~~l~-----------~sp~~~~l~s~~~Dg~I~vwd~~  191 (347)
                      .-++..+..+++|++....+. ...+.+|...+..++           .+|||+.|+.++.||.++.|.+-
T Consensus       195 ~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  195 KVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             cceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence            447777888889988775433 345566877666554           47888888888889888888763

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.28  E-value=2.8  Score=36.37  Aligned_cols=152  Identities=7%  Similarity=0.103  Sum_probs=89.8

Q ss_pred             ecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCC
Q 043707          158 KSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA  237 (347)
Q Consensus       158 ~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  237 (347)
                      .+-...|.++.|+|+.+.|++......-.||=-..++.........                               -..
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-------------------------------~~D  130 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-------------------------------FSD  130 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc-------------------------------cCC
Confidence            4444559999999999998888877777777665665444333321                               122


Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEE----------EEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcc
Q 043707          238 VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE----------SINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRE  306 (347)
Q Consensus       238 V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~----------~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~  306 (347)
                      .-.+.+..++.+.++--.++++.++.+.....+.          .........-.++|.|.. .|+.+-+-+-+.||...
T Consensus       131 pE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~  210 (316)
T COG3204         131 PETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT  210 (316)
T ss_pred             hhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence            3345666666666666667777777665432111          111114557789999875 77778788888888776


Q ss_pred             cCCccceeeehhhhhcc-------CCcEEEEEEccCCC-EEEEec
Q 043707          307 LQGKGTKHFLAQVLLKQ-------ENAITALAVNQESA-VVYCGS  343 (347)
Q Consensus       307 ~~~~~~~~~~~~~~~~h-------~~~V~~l~~~p~~~-~l~sgs  343 (347)
                      .....   ........+       -..|.++.|++... +|+-+-
T Consensus       211 ~~~~~---l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~  252 (316)
T COG3204         211 QSPSS---LSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSD  252 (316)
T ss_pred             cCCcc---cccccccCcccccceEeeccccceecCCCCcEEEEec
Confidence            33211   011111111       23577788887544 444333

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.05  E-value=1.5  Score=43.04  Aligned_cols=170  Identities=12%  Similarity=0.134  Sum_probs=96.1

Q ss_pred             ccccEEEEeecCCEEEEecCCCcEEEEeCCCcce--------eee----------------cCCCCeeEEEEeC--CCCE
Q 043707          122 KEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFS--------GFK----------------SNSGLVKAIIITG--DSNK  175 (347)
Q Consensus       122 h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~~~~~--------~~~----------------~h~~~V~~l~~sp--~~~~  175 (347)
                      -++-.+++.- .++|+++. .+.|+||+......        .+.                .....|+-|...-  +...
T Consensus        39 fKNNLtalsq-~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EV  116 (717)
T PF08728_consen   39 FKNNLTALSQ-RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEV  116 (717)
T ss_pred             cccceeEEec-CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeE
Confidence            3344555555 67777766 56899997321111        000                0112355555433  4568


Q ss_pred             EEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEc--CCCCEEEEE
Q 043707          176 IFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLN--AEQGLLYSG  253 (347)
Q Consensus       176 l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~~~l~s~  253 (347)
                      |+.|..||.|.+|.++.--............             ......-...........++.++++  ...++||++
T Consensus       117 Ll~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~-------------~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVS  183 (717)
T PF08728_consen  117 LLLCTDDGDVLAYYTETIIEAIERFSEDNDS-------------GFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVS  183 (717)
T ss_pred             EEEEecCCeEEEEEHHHHHHHHHhhcccccc-------------ccccccCCCCeEeecCCceeEEEEEecCcceEEEEe
Confidence            9999999999999874321000000000000             0000000111222355678999998  788899999


Q ss_pred             eCCCcEEEEeCCCC--EE-EEEEecCCCcEEEEEeCCC-----C--EEEEEeCCCcEEEEEcc
Q 043707          254 SWDKTLKVWRISDC--KC-LESINAHDDAINSVVAGFD-----S--LVFTGSADGTVKVWRRE  306 (347)
Q Consensus       254 s~dg~i~vwdl~~~--~~-~~~~~~h~~~v~~i~~~~~-----~--~l~s~~~dg~I~vwd~~  306 (347)
                      +....|.||-....  +. ...-..|..-|.+|.|-++     |  .|++++-.|.+.+|++.
T Consensus       184 sNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  184 SNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             cCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            98888888865432  11 1111125566888888654     2  67788899999999883

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.98  E-value=0.41  Score=40.26  Aligned_cols=65  Identities=17%  Similarity=0.233  Sum_probs=48.3

Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCEEEEEE-------e-------cCCCcEEEEEeCCCCEEEEEeCCCcEEEEEccc
Q 043707          243 LNAEQGLLYSGSWDKTLKVWRISDCKCLESI-------N-------AHDDAINSVVAGFDSLVFTGSADGTVKVWRREL  307 (347)
Q Consensus       243 ~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~-------~-------~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~  307 (347)
                      +...+++|++-+.+|.+++||+.+++++..-       .       .....|..+....+|..+..-.+|..+.|+...
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc
Confidence            4456788999999999999999998765332       1       244668888888888544555678889998863

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.88  E-value=0.34  Score=49.07  Aligned_cols=107  Identities=8%  Similarity=-0.049  Sum_probs=67.6

Q ss_pred             CCCeeEEEEcCCCCEEEEE--eCCCcEEEEeCCCCEEE-----EEEecC------CCcEEEEEeCCCC--EEEEEeCCCc
Q 043707          235 YDAVSCLSLNAEQGLLYSG--SWDKTLKVWRISDCKCL-----ESINAH------DDAINSVVAGFDS--LVFTGSADGT  299 (347)
Q Consensus       235 ~~~V~~l~~~~~~~~l~s~--s~dg~i~vwdl~~~~~~-----~~~~~h------~~~v~~i~~~~~~--~l~s~~~dg~  299 (347)
                      .-.+..+...+|+...++.  +.+-.|..||+++...-     .-|+.|      .....++.|.|.-  ..+....|+.
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            3445556666665544443  33447889999754221     112222      2335577888864  7778889999


Q ss_pred             EEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          300 VKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       300 I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      |+|..+.....     .... ..-...+++++|+|.|+.++.|-..|+
T Consensus       180 l~V~~~~~~~~-----~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt  221 (1405)
T KOG3630|consen  180 LRVKSTKQLAQ-----NVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGT  221 (1405)
T ss_pred             hhhhhhhhhhh-----hhcc-cCcccceeeEEeccccceeeEecCCCe
Confidence            99998863322     1111 223557899999999999999987774

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=93.86  E-value=3.9  Score=35.22  Aligned_cols=105  Identities=10%  Similarity=0.042  Sum_probs=51.0

Q ss_pred             CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCC-----CcEEEEEeCCCCEEEE-EeCCCcEEEEEcccCC
Q 043707          236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHD-----DAINSVVAGFDSLVFT-GSADGTVKVWRRELQG  309 (347)
Q Consensus       236 ~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~-----~~v~~i~~~~~~~l~s-~~~dg~I~vwd~~~~~  309 (347)
                      ..=+.|+  .++..|+.......|+++|..+.+.+..+....     ..++-+.|. +|.|.+ .=....|...|..++.
T Consensus       130 ~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~  206 (264)
T PF05096_consen  130 GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGK  206 (264)
T ss_dssp             SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-B
T ss_pred             CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCe
Confidence            3444555  345667766667789999998887776665332     235556665 443332 3334455555555433


Q ss_pred             ccceee---ehhhhh------ccCCcEEEEEEccCCCEEEEec
Q 043707          310 KGTKHF---LAQVLL------KQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       310 ~~~~~~---~~~~~~------~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                      .....-   +.....      ....-.+.||++|+.+.|...|
T Consensus       207 V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  207 VVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            210000   111110      1134679999999876655554

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.84  E-value=0.36  Score=28.70  Aligned_cols=31  Identities=19%  Similarity=0.290  Sum_probs=25.7

Q ss_pred             CCeeEEEEcCCC---CEEEEEeCCCcEEEEeCCC
Q 043707          236 DAVSCLSLNAEQ---GLLYSGSWDKTLKVWRISD  266 (347)
Q Consensus       236 ~~V~~l~~~~~~---~~l~s~s~dg~i~vwdl~~  266 (347)
                      +.|+++.|+|+.   .+|+-+-.-|.+.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468999999854   4888887789999999995

It contains a characteristic DLL sequence motif.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.59  E-value=0.12  Score=50.98  Aligned_cols=153  Identities=16%  Similarity=0.169  Sum_probs=87.5

Q ss_pred             eeeccccEEEEeec-CC--EEEEecCCCcEEEEeCCC---c------ceeeecCCCCeeEEEEeC---CCCEEEEEeCCC
Q 043707          119 IVRKEGHIYSLAAS-GD--LLYTGSDSKNIRVWKNLK---E------FSGFKSNSGLVKAIIITG---DSNKIFTGHQDG  183 (347)
Q Consensus       119 l~~h~~~V~~l~~~-~~--~l~tg~~dg~I~vwd~~~---~------~~~~~~h~~~V~~l~~sp---~~~~l~s~~~Dg  183 (347)
                      +++..|.|-.+.+- .+  .++  ..-|...||++..   .      ++....-...+.-+.|.|   +.-++..+-.++
T Consensus       128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~  205 (1283)
T KOG1916|consen  128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG  205 (1283)
T ss_pred             HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence            34555666666652 11  111  3347788998431   1      122222233445555554   666777778889


Q ss_pred             cEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCe-----------eEEEEcCCCCEEEE
Q 043707          184 KIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAV-----------SCLSLNAEQGLLYS  252 (347)
Q Consensus       184 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V-----------~~l~~~~~~~~l~s  252 (347)
                      .|++...+........                                 .|...+           .--.++|||..++.
T Consensus       206 ~i~lL~~~ra~~~l~r---------------------------------sHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~  252 (1283)
T KOG1916|consen  206 EIRLLNINRALRSLFR---------------------------------SHSQRVTDMAFFAEGVLKLASLSPDGTVFAW  252 (1283)
T ss_pred             ceeEeeechHHHHHHH---------------------------------hcCCCcccHHHHhhchhhheeeCCCCcEEEE
Confidence            9998877654321000                                 122221           11237999999999


Q ss_pred             EeCCCcEEEEeC-----CCCEEEEEEecCC-CcEEEEEeCCC-------C---EEEEE-eCCCcEEEEEcc
Q 043707          253 GSWDKTLKVWRI-----SDCKCLESINAHD-DAINSVVAGFD-------S---LVFTG-SADGTVKVWRRE  306 (347)
Q Consensus       253 ~s~dg~i~vwdl-----~~~~~~~~~~~h~-~~v~~i~~~~~-------~---~l~s~-~~dg~I~vwd~~  306 (347)
                      ++.||.++.|.+     +.-+|+...+.|+ .+-.|..|+..       +   +++++ ..+..+++|...
T Consensus       253 a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a  323 (1283)
T KOG1916|consen  253 AISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEA  323 (1283)
T ss_pred             eecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeecc
Confidence            999999888865     3345677777777 34334444432       1   34444 456788999765

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.49  E-value=0.85  Score=38.35  Aligned_cols=68  Identities=19%  Similarity=0.184  Sum_probs=51.0

Q ss_pred             cEEEEeecCCEEEEecCCCcEEEEeCCCcceee---------e-------cCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707          125 HIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGF---------K-------SNSGLVKAIIITGDSNKIFTGHQDGKIRIW  188 (347)
Q Consensus       125 ~V~~l~~~~~~l~tg~~dg~I~vwd~~~~~~~~---------~-------~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw  188 (347)
                      .+..+...+++|++-..+|.+++||+.+....+         .       .....|..+.++.+|.-|++-+ +|....|
T Consensus        14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y   92 (219)
T PF07569_consen   14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSY   92 (219)
T ss_pred             ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEe
Confidence            556688899999999999999999965432221         1       2456788899998887777665 5788999


Q ss_pred             ecCCC
Q 043707          189 KVSRK  193 (347)
Q Consensus       189 d~~~~  193 (347)
                      +.+-+
T Consensus        93 ~~~L~   97 (219)
T PF07569_consen   93 SPDLG   97 (219)
T ss_pred             ccccc
Confidence            87654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.45  E-value=4  Score=40.00  Aligned_cols=161  Identities=16%  Similarity=0.112  Sum_probs=86.0

Q ss_pred             ccceeEeeeeccccEEEEeecC-CEEEEecCCCcEEEEeCCCccee-----eecCCCCeeEEEEeCCCCEEEEEeCCCcE
Q 043707          112 CNGLIGSIVRKEGHIYSLAASG-DLLYTGSDSKNIRVWKNLKEFSG-----FKSNSGLVKAIIITGDSNKIFTGHQDGKI  185 (347)
Q Consensus       112 ~~~~i~~l~~h~~~V~~l~~~~-~~l~tg~~dg~I~vwd~~~~~~~-----~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I  185 (347)
                      .+.+++.+.-..+.+..+.|+. .-|+.-..+|+++||+.......     +......|..+.+..+|-.+++.  +|.+
T Consensus        72 sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~--~g~v  149 (829)
T KOG2280|consen   72 SGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLTV--SGQV  149 (829)
T ss_pred             cccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEec--CCcE
Confidence            3444555555556888899874 47888899999999995533222     23344456666666666444433  3444


Q ss_pred             E-EEecCCCCCceeeeecccccccceEEeccC---CCeEEEEe-----------ec--ceeeeeecCCCeeEEEEcCCCC
Q 043707          186 R-IWKVSRKNPSVHKRVGSLPTFKDYVKSSVN---PKNYVEVR-----------RN--RNVLKIRHYDAVSCLSLNAEQG  248 (347)
Q Consensus       186 ~-vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-----------~~--~~~~~~~h~~~V~~l~~~~~~~  248 (347)
                      . +-++..........++.............+   ...+..+.           ..  .......-...+..+..+|+.+
T Consensus       150 ~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~  229 (829)
T KOG2280|consen  150 ILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRR  229 (829)
T ss_pred             EEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcc
Confidence            3 333332221111111111111111111111   11111111           11  1111111235577889999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCEEEEEEe
Q 043707          249 LLYSGSWDKTLKVWRISDCKCLESIN  274 (347)
Q Consensus       249 ~l~s~s~dg~i~vwdl~~~~~~~~~~  274 (347)
                      +|+--..+|.|.+-+....+++..+.
T Consensus       230 ~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  230 FLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             eEEEEecCCcEEEEecchhhhhhccC
Confidence            99999999999999888777776665

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=93.35  E-value=5.7  Score=35.54  Aligned_cols=71  Identities=23%  Similarity=0.349  Sum_probs=48.7

Q ss_pred             eeEEEEcCCCCEEEEEeC--------CC--cEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC--EEEEE-eCCCcEEEEE
Q 043707          238 VSCLSLNAEQGLLYSGSW--------DK--TLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTG-SADGTVKVWR  304 (347)
Q Consensus       238 V~~l~~~~~~~~l~s~s~--------dg--~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~--~l~s~-~~dg~I~vwd  304 (347)
                      -.-+++++..+.|++--.        |+  .|-++|+.+++.+..+.. ...+.+|..+.+.  +|++. ..++.|.+||
T Consensus       240 ~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D  318 (342)
T PF06433_consen  240 WQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYD  318 (342)
T ss_dssp             SS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred             eeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence            345778876666665322        21  277889999999999874 3457788888775  66554 5689999999


Q ss_pred             cccCC
Q 043707          305 RELQG  309 (347)
Q Consensus       305 ~~~~~  309 (347)
                      ..+++
T Consensus       319 ~~tGk  323 (342)
T PF06433_consen  319 AATGK  323 (342)
T ss_dssp             TTT--
T ss_pred             CcCCc
Confidence            98754

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=93.14  E-value=5.9  Score=38.59  Aligned_cols=95  Identities=15%  Similarity=0.231  Sum_probs=49.5

Q ss_pred             CCCEEEEEeCCCc------EEEEeCCCCE--EEEEEecCCCcEEEEEeCCCCEEEEEeCCC-----cEEEEEcccCCccc
Q 043707          246 EQGLLYSGSWDKT------LKVWRISDCK--CLESINAHDDAINSVVAGFDSLVFTGSADG-----TVKVWRRELQGKGT  312 (347)
Q Consensus       246 ~~~~l~s~s~dg~------i~vwdl~~~~--~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg-----~I~vwd~~~~~~~~  312 (347)
                      ++.+.++|+.++.      +..||..+.+  .+..+..-..... ++.-.+.+.+.||.|+     +|..||.++.    
T Consensus       427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~----  501 (571)
T KOG4441|consen  427 GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVLNGKIYVVGGFDGTSALSSVERYDPETN----  501 (571)
T ss_pred             CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEECCEEEEECCccCCCccceEEEEcCCCC----
Confidence            5677777775544      5677766543  2223322222222 3333344777787776     3677877643    


Q ss_pred             eeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          313 KHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       313 ~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      .+..+..+......+-.+.+  +++..+.|+.||.
T Consensus       502 ~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~  534 (571)
T KOG4441|consen  502 QWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGN  534 (571)
T ss_pred             ceeEcccCccccccccEEEE--CCEEEEEecccCc
Confidence            22333323333333333333  4677788888773

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.04  E-value=0.47  Score=43.12  Aligned_cols=70  Identities=10%  Similarity=-0.024  Sum_probs=40.8

Q ss_pred             CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEE-ecC----------------CCcEEEEEeCCCC-EEEE-Ee
Q 043707          235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI-NAH----------------DDAINSVVAGFDS-LVFT-GS  295 (347)
Q Consensus       235 ~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~-~~h----------------~~~v~~i~~~~~~-~l~s-~~  295 (347)
                      ...+....|+|+|+.++-.. ++.|.++++.+++..+-- .+-                -+.-..+.|+||+ +|+. --
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            35677899999999988886 678999998877443221 110                0122567799998 4443 33


Q ss_pred             CCCcEEEEEc
Q 043707          296 ADGTVKVWRR  305 (347)
Q Consensus       296 ~dg~I~vwd~  305 (347)
                      .+..|+.+.+
T Consensus       121 d~~~v~~~~~  130 (353)
T PF00930_consen  121 DEREVPEYPL  130 (353)
T ss_dssp             E-TTS-EEEE
T ss_pred             CCcCCceEEe
Confidence            4444444433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.97  E-value=0.4  Score=28.50  Aligned_cols=32  Identities=13%  Similarity=0.295  Sum_probs=26.3

Q ss_pred             CCeeEEEEeCCC---CEEEEEeCCCcEEEEecCCC
Q 043707          162 GLVKAIIITGDS---NKIFTGHQDGKIRIWKVSRK  193 (347)
Q Consensus       162 ~~V~~l~~sp~~---~~l~s~~~Dg~I~vwd~~~~  193 (347)
                      ++|.+++|+|+.   ..|+.+-.-|.|.|+|+++.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            578999999844   47888888899999999853

It contains a characteristic DLL sequence motif.

>PHA02713 hypothetical protein; Provisional

Probab=92.97  E-value=6.6  Score=38.18  Aligned_cols=83  Identities=7%  Similarity=0.021  Sum_probs=40.1

Q ss_pred             cEEEEeCCCCE--EEEEEecCCCcEEEEEeCCCCEEEEEeCC------CcEEEEEcccCCccceeeehhhhhccCCcEEE
Q 043707          258 TLKVWRISDCK--CLESINAHDDAINSVVAGFDSLVFTGSAD------GTVKVWRRELQGKGTKHFLAQVLLKQENAITA  329 (347)
Q Consensus       258 ~i~vwdl~~~~--~~~~~~~h~~~v~~i~~~~~~~l~s~~~d------g~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~  329 (347)
                      .+..||..+.+  .+..+....... +++...+.+.+.||.+      ..|..||.++..   .+.....+.........
T Consensus       433 ~ve~YDP~td~W~~v~~m~~~r~~~-~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~---~W~~~~~m~~~r~~~~~  508 (557)
T PHA02713        433 KVIRYDTVNNIWETLPNFWTGTIRP-GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYN---GWELITTTESRLSALHT  508 (557)
T ss_pred             eEEEECCCCCeEeecCCCCcccccC-cEEEECCEEEEEeCCCCCCccceeEEEecCCCCC---CeeEccccCccccccee
Confidence            46778876543  222222111111 2222223355556654      246778877411   23333444333333333


Q ss_pred             EEEccCCCEEEEecCCC
Q 043707          330 LAVNQESAVVYCGSSDG  346 (347)
Q Consensus       330 l~~~p~~~~l~sgs~DG  346 (347)
                      +++  +++..++||.||
T Consensus       509 ~~~--~~~iyv~Gg~~~  523 (557)
T PHA02713        509 ILH--DNTIMMLHCYES  523 (557)
T ss_pred             EEE--CCEEEEEeeecc
Confidence            333  578888888776

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=92.97  E-value=7.8  Score=37.09  Aligned_cols=111  Identities=13%  Similarity=0.125  Sum_probs=65.6

Q ss_pred             ccEEEEeecCC------EEEEecCCCcEEEEeCC-------CcceeeecCC-----CCeeEEEEeCCCCEEEEEeCCCcE
Q 043707          124 GHIYSLAASGD------LLYTGSDSKNIRVWKNL-------KEFSGFKSNS-----GLVKAIIITGDSNKIFTGHQDGKI  185 (347)
Q Consensus       124 ~~V~~l~~~~~------~l~tg~~dg~I~vwd~~-------~~~~~~~~h~-----~~V~~l~~sp~~~~l~s~~~Dg~I  185 (347)
                      .+|+.+.|..-      .|++.-..+.|.||.+.       +.+.....+-     ---..+.|+|....|+.-.....-
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS  136 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence            46788887521      34444556789999732       1111111111     123467899987777766655444


Q ss_pred             EEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeC
Q 043707          186 RIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRI  264 (347)
Q Consensus       186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~vwdl  264 (347)
                      .+.++..........                               +...+.|.|.+|-.||+.|+++-. .=.-+|||-
T Consensus       137 V~~sV~~d~srVkaD-------------------------------i~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  137 VLPSVHCDSSRVKAD-------------------------------IKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             EeeeeeeCCceEEEe-------------------------------ccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence            455655443222222                               236788999999999988777643 334678985


Q ss_pred             C
Q 043707          265 S  265 (347)
Q Consensus       265 ~  265 (347)
                      .
T Consensus       186 ~  186 (671)
T PF15390_consen  186 A  186 (671)
T ss_pred             c
Confidence            4

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.96  E-value=4.7  Score=37.27  Aligned_cols=104  Identities=7%  Similarity=0.054  Sum_probs=71.9

Q ss_pred             cCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEE----EEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCC
Q 043707          234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL----ESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQG  309 (347)
Q Consensus       234 h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~----~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~  309 (347)
                      ..++|.++.|++|.+.|++--.|++|.+++....+..    .+-+.....|....|....-+|.-.. .-+.+|......
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~-~G~e~y~v~pek  143 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITD-QGIEFYQVLPEK  143 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEec-CCeEEEEEchhh
Confidence            4568999999999999999999999999987432222    12233344577888876655554443 346777765443


Q ss_pred             ccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          310 KGTKHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       310 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                      +     .++....|...|+--.|.++.+.+.-++
T Consensus       144 r-----slRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  144 R-----SLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             h-----hhhhhhhcccCccEEEEccccceEeeec
Confidence            3     4555666788888899999887655443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.96  E-value=2.8  Score=41.79  Aligned_cols=92  Identities=15%  Similarity=0.092  Sum_probs=52.9

Q ss_pred             CCeeEEEEeCCCCEEEEEeCCCcEEEEecCCC--CCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCee
Q 043707          162 GLVKAIIITGDSNKIFTGHQDGKIRIWKVSRK--NPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVS  239 (347)
Q Consensus       162 ~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  239 (347)
                      -.|..|.++|+|.+++-.|..|. .|-.+-..  .... ..     ....-+       ....+.-........+...|.
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~-~~-----~g~~~i-------~Crt~~v~~~~~~~~~~~~i~  150 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGE-FE-----DGKKEI-------NCRTVPVDERFFTSNSSLEIK  150 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCcccc-cc-----CCCcce-------eEEEEEechhhccCCCCceEE
Confidence            35888999999999998887654 44444221  0000 00     000000       000000011111113556789


Q ss_pred             EEEEcCC---CCEEEEEeCCCcEEEEeCCCC
Q 043707          240 CLSLNAE---QGLLYSGSWDKTLKVWRISDC  267 (347)
Q Consensus       240 ~l~~~~~---~~~l~s~s~dg~i~vwdl~~~  267 (347)
                      .+.|+|.   +..|+.-..|+++++||+...
T Consensus       151 qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  151 QVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence            9999996   578888888999999999753

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.81  E-value=6  Score=34.33  Aligned_cols=173  Identities=13%  Similarity=0.089  Sum_probs=95.4

Q ss_pred             ecCC-EEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEeC-CCCEEEEEeCCCc-EEEEecCCCCCceeeeecccccc
Q 043707          131 ASGD-LLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGK-IRIWKVSRKNPSVHKRVGSLPTF  207 (347)
Q Consensus       131 ~~~~-~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~-I~vwd~~~~~~~~~~~~~~~~~~  207 (347)
                      .+|. ..++-+++|+|.-=-    .     -...-..|+++| ...-++.+-.-|+ ..++|....+.......      
T Consensus        45 ~dgs~g~a~~~eaGk~v~~~----~-----lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s------  109 (366)
T COG3490          45 RDGSFGAATLSEAGKIVFAT----A-----LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVS------  109 (366)
T ss_pred             cCCceeEEEEccCCceeeee----e-----cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEec------
Confidence            3555 455667777653211    0     111223456666 3334555555554 45788877764332211      


Q ss_pred             cceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-----CCcEEEEeCCCC-EEEEEEecCCCcEE
Q 043707          208 KDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-----DKTLKVWRISDC-KCLESINAHDDAIN  281 (347)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-----dg~i~vwdl~~~-~~~~~~~~h~~~v~  281 (347)
                                        .+...+.+|.      .|++||.+|+..-.     -|.|-|||.+.+ +.+..+..|.-...
T Consensus       110 ------------------~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpH  165 (366)
T COG3490         110 ------------------QEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPH  165 (366)
T ss_pred             ------------------ccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcc
Confidence                              1112223443      58999999988644     367999999754 56777888887788


Q ss_pred             EEEeCCCCEEEEEeCCC-------------------cEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEe
Q 043707          282 SVVAGFDSLVFTGSADG-------------------TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCG  342 (347)
Q Consensus       282 ~i~~~~~~~l~s~~~dg-------------------~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sg  342 (347)
                      .+.+.+||.+++....|                   .+.+.|..++...+++.+...  .+.-.|..++..+||..++.|
T Consensus       166 ev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~--l~~lSiRHld~g~dgtvwfgc  243 (366)
T COG3490         166 EVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPAS--LRQLSIRHLDIGRDGTVWFGC  243 (366)
T ss_pred             eeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchh--hhhcceeeeeeCCCCcEEEEE
Confidence            88999998333222111                   122333222221111111111  245578899999998877665


Q ss_pred             cC
Q 043707          343 SS  344 (347)
Q Consensus       343 s~  344 (347)
                      -.
T Consensus       244 Qy  245 (366)
T COG3490         244 QY  245 (366)
T ss_pred             Ee
Confidence            43

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=92.60  E-value=3  Score=37.60  Aligned_cols=107  Identities=10%  Similarity=0.083  Sum_probs=57.3

Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEE---EEEEe----cCCCcEEEEEeCCC----CEEEEEeC-------CC
Q 043707          237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC---LESIN----AHDDAINSVVAGFD----SLVFTGSA-------DG  298 (347)
Q Consensus       237 ~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~---~~~~~----~h~~~v~~i~~~~~----~~l~s~~~-------dg  298 (347)
                      ..+.|+|.|++.+|++ ...|.|++++ .++..   +..+.    ........++++|+    ++|+....       +.
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            3578999999877665 5599999999 44543   33331    23456789999995    44433322       12


Q ss_pred             --cEEEEEcccCCc--cceeeehhhhhc---cCCcEEEEEEccCCCEEEEecCC
Q 043707          299 --TVKVWRRELQGK--GTKHFLAQVLLK---QENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       299 --~I~vwd~~~~~~--~~~~~~~~~~~~---h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                        .|.-|.......  .....++..+..   ....-..|+|.|||.+.++.+..
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~  134 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG  134 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence              344344432211  111222222222   23355679999999777666654

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.13  E-value=5.8  Score=34.55  Aligned_cols=110  Identities=11%  Similarity=0.073  Sum_probs=74.0

Q ss_pred             cCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecC-CCcEEEEEeCCCCE-EEEEeCCCcEEEEEcccCCcc
Q 043707          234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH-DDAINSVVAGFDSL-VFTGSADGTVKVWRRELQGKG  311 (347)
Q Consensus       234 h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h-~~~v~~i~~~~~~~-l~s~~~dg~I~vwd~~~~~~~  311 (347)
                      -...|..+.|+|+.+.|++......-.||=..+|+.+.++.-. -...-.|.+..++. +++--.++.+.++.+......
T Consensus        84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~  163 (316)
T COG3204          84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV  163 (316)
T ss_pred             ccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence            3445999999999999999888888888877889998887521 12234567766664 444456888888887644220


Q ss_pred             ----ceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          312 ----TKHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       312 ----~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                          .....+............++|.|..+.|..+-
T Consensus       164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK  199 (316)
T COG3204         164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK  199 (316)
T ss_pred             EeccceEEeccccCCCCcCceeeecCCCCceEEEEE
Confidence                11122233333366788999999887776553

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.10  E-value=6.1  Score=32.79  Aligned_cols=129  Identities=16%  Similarity=0.317  Sum_probs=71.2

Q ss_pred             EEeecC-CEEEEecCCCcEEEEeCCCc----ceeeecCCCCeeEEEEeCCCCEEEEEeCCC------cEEEE---ecCC-
Q 043707          128 SLAASG-DLLYTGSDSKNIRVWKNLKE----FSGFKSNSGLVKAIIITGDSNKIFTGHQDG------KIRIW---KVSR-  192 (347)
Q Consensus       128 ~l~~~~-~~l~tg~~dg~I~vwd~~~~----~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg------~I~vw---d~~~-  192 (347)
                      ++...| +.|+.+...+.|.+|++.+.    ...|.. -+.|..++++..|++|+|--.+.      .+|+|   +... 
T Consensus        22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~  100 (215)
T PF14761_consen   22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE  100 (215)
T ss_pred             eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence            344445 65555566678999996622    333433 37899999999999999875432      45654   3321 


Q ss_pred             CCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 043707          193 KNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC  267 (347)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~  267 (347)
                      .+.....++...+...     ...    -.....-..+.+.-...+.|++..|-..-|+.|+ ++++.+|.+...
T Consensus       101 ~~~~v~vRiaG~~v~~-----~~~----~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~  165 (215)
T PF14761_consen  101 ENSPVRVRIAGHRVTP-----SFN----ESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ  165 (215)
T ss_pred             cCCcEEEEEccccccc-----CCC----CccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence            1111111111100000     000    0001112233344567888999999655566666 568999988643

>PRK13684 Ycf48-like protein; Provisional

Probab=92.06  E-value=8.9  Score=34.57  Aligned_cols=104  Identities=10%  Similarity=0.058  Sum_probs=58.9

Q ss_pred             CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecC----CCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCc
Q 043707          235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH----DDAINSVVAGFDSLVFTGSADGTVKVWRRELQGK  310 (347)
Q Consensus       235 ~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h----~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~  310 (347)
                      ...++.+.+.+++..++++. .|.+++=....++.-.....+    ...+..+.+.+++.++.++.+|.|.. .. ..++
T Consensus       214 ~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~-d~G~  290 (334)
T PRK13684        214 SRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLV-SK-DGGK  290 (334)
T ss_pred             cccceeeeEcCCCCEEEEec-CCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCCeEEE-eC-CCCC
Confidence            45678889999888777654 576643233444433322221    23477888888876667777886653 22 2222


Q ss_pred             cceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          311 GTKHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       311 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                        ..........-......+.|..+++.+++|.
T Consensus       291 --tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  321 (334)
T PRK13684        291 --TWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ  321 (334)
T ss_pred             --CCeECCcCCCCCcceEEEEEeCCCceEEECC
Confidence              1112111111224678888887777666554

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=91.82  E-value=2.7  Score=38.86  Aligned_cols=75  Identities=13%  Similarity=0.079  Sum_probs=53.0

Q ss_pred             CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEE----EEEeCCC--------------C--EEEEE
Q 043707          235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAIN----SVVAGFD--------------S--LVFTG  294 (347)
Q Consensus       235 ~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~----~i~~~~~--------------~--~l~s~  294 (347)
                      ...+.+++.+|.+.+.++...-|+|.++|+.++..++.+++..++-.    ...-...              .  +++-+
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya  386 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA  386 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence            34578899999999998888889999999999988888776654321    1111111              1  33446


Q ss_pred             eCCCcEEEEEcccCC
Q 043707          295 SADGTVKVWRRELQG  309 (347)
Q Consensus       295 ~~dg~I~vwd~~~~~  309 (347)
                      -.-|.|.||.++.+.
T Consensus       387 prRg~lEvW~~~~g~  401 (415)
T PF14655_consen  387 PRRGILEVWSMRQGP  401 (415)
T ss_pred             ccCCeEEEEecCCCC
Confidence            678999999998543

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=91.73  E-value=7.9  Score=33.32  Aligned_cols=145  Identities=12%  Similarity=0.018  Sum_probs=78.4

Q ss_pred             EEeecCCEEEEec---CCCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe-cCCCCCceeeeecc
Q 043707          128 SLAASGDLLYTGS---DSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK-VSRKNPSVHKRVGS  203 (347)
Q Consensus       128 ~l~~~~~~l~tg~---~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd-~~~~~~~~~~~~~~  203 (347)
                      ++..+++.++.-.   ....++++.......... -...+..-.|.+++...+....+...+++. ...+... ...+..
T Consensus        30 AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~-~~~v~~  107 (253)
T PF10647_consen   30 AVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE-PVEVDW  107 (253)
T ss_pred             EECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce-eEEecc
Confidence            4555565444333   334455555444333322 223677788999987666666677777774 2222211 111110


Q ss_pred             cccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEe---CCCcEEEEeCC---CC------EEEE
Q 043707          204 LPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGS---WDKTLKVWRIS---DC------KCLE  271 (347)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s---~dg~i~vwdl~---~~------~~~~  271 (347)
                                                  ..-...|..+.++|||..++.-.   .++.|.|=-+.   .+      .++.
T Consensus       108 ----------------------------~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~  159 (253)
T PF10647_consen  108 ----------------------------PGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRR  159 (253)
T ss_pred             ----------------------------cccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceE
Confidence                                        00112899999999998877665   35667666442   23      1122


Q ss_pred             EEecCCCcEEEEEeCCCCEEE--EEeCCCcEEE
Q 043707          272 SINAHDDAINSVVAGFDSLVF--TGSADGTVKV  302 (347)
Q Consensus       272 ~~~~h~~~v~~i~~~~~~~l~--s~~~dg~I~v  302 (347)
                      ........+..+.|.+++.|+  +...++.+..
T Consensus       160 ~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~  192 (253)
T PF10647_consen  160 VAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR  192 (253)
T ss_pred             ecccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence            222334678999999988333  3334443433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=91.72  E-value=12  Score=35.26  Aligned_cols=32  Identities=19%  Similarity=0.061  Sum_probs=24.0

Q ss_pred             CCeeEEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 043707          162 GLVKAIIITGDSNKIFTGHQDGKIRIWKVSRK  193 (347)
Q Consensus       162 ~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~  193 (347)
                      ..-+.|+|.|++++|++--..|.|++++-.++
T Consensus        30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~   61 (454)
T TIGR03606        30 NKPWALLWGPDNQLWVTERATGKILRVNPETG   61 (454)
T ss_pred             CCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence            45778999999977666655699998876544

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=91.45  E-value=13  Score=35.41  Aligned_cols=66  Identities=12%  Similarity=0.154  Sum_probs=38.2

Q ss_pred             CCEEEEecCCCcEEEEeCCC--cceeeecCCC------Ce--eEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceee
Q 043707          133 GDLLYTGSDSKNIRVWKNLK--EFSGFKSNSG------LV--KAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHK  199 (347)
Q Consensus       133 ~~~l~tg~~dg~I~vwd~~~--~~~~~~~h~~------~V--~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~  199 (347)
                      +..++.++.++.|+-.|...  .+..+.....      .+  ..+... ++..++.++.+|.|+.+|.++++..-..
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~  136 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKF  136 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeee
Confidence            55666677778888887432  2222211111      11  011121 2258888889999999999998754443

The alignment model contains an 8-bladed beta-propeller.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=90.85  E-value=1.5  Score=43.19  Aligned_cols=104  Identities=10%  Similarity=0.131  Sum_probs=69.0

Q ss_pred             cCCEEEEecCCCcEEEEeCCCc------c-------------ee-e-ecCCCCeeEEEEe--CCCCEEEEEeCCCcEEEE
Q 043707          132 SGDLLYTGSDSKNIRVWKNLKE------F-------------SG-F-KSNSGLVKAIIIT--GDSNKIFTGHQDGKIRIW  188 (347)
Q Consensus       132 ~~~~l~tg~~dg~I~vwd~~~~------~-------------~~-~-~~h~~~V~~l~~s--p~~~~l~s~~~Dg~I~vw  188 (347)
                      +.+.|+.|.+||.|.+|.+...      .             +. + ..-...+++++++  ...++||.++....|.||
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF  192 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF  192 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence            3558999999999999952100      0             00 1 1123478999998  778889999988888888


Q ss_pred             ecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCC---C---EEEEEeCCCcEEEE
Q 043707          189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ---G---LLYSGSWDKTLKVW  262 (347)
Q Consensus       189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~---~---~l~s~s~dg~i~vw  262 (347)
                      -............                             ...|...|.+|+|-++.   .   .|++++-.|.+.+|
T Consensus       193 af~l~~~r~~~~~-----------------------------s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~  243 (717)
T PF08728_consen  193 AFALVDERFYHVP-----------------------------SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTF  243 (717)
T ss_pred             EEecccccccccc-----------------------------ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEE
Confidence            6554211100000                             01266789999997742   2   77788889999998


Q ss_pred             eC
Q 043707          263 RI  264 (347)
Q Consensus       263 dl  264 (347)
                      ++
T Consensus       244 ~I  245 (717)
T PF08728_consen  244 KI  245 (717)
T ss_pred             EE
Confidence            87

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=90.82  E-value=4.4  Score=37.97  Aligned_cols=60  Identities=13%  Similarity=0.199  Sum_probs=45.0

Q ss_pred             cEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707          279 AINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       279 ~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      ...+..-...|++|+++..|-|++||.- +.+     ....+.+-...|..|....+|++|++.+.
T Consensus       564 ~Fss~~tTesGyIa~as~kGDirLyDRi-g~r-----AKtalP~lG~aIk~idvta~Gk~ilaTCk  623 (776)
T COG5167         564 KFSSGMTTESGYIAAASRKGDIRLYDRI-GKR-----AKTALPGLGDAIKHIDVTANGKHILATCK  623 (776)
T ss_pred             cccccccccCceEEEecCCCceeeehhh-cch-----hhhcCcccccceeeeEeecCCcEEEEeec
Confidence            3445555556899999999999999975 222     33445566779999999999988877664

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=90.81  E-value=1.1  Score=43.43  Aligned_cols=38  Identities=26%  Similarity=0.692  Sum_probs=28.8

Q ss_pred             CeeEEEEcC----CCCEEEEEeCCCcEEEEeCCCCEEEEEEe
Q 043707          237 AVSCLSLNA----EQGLLYSGSWDKTLKVWRISDCKCLESIN  274 (347)
Q Consensus       237 ~V~~l~~~~----~~~~l~s~s~dg~i~vwdl~~~~~~~~~~  274 (347)
                      .+..++++.    +..+|++-+.|+++|+||+.+++++.+..
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence            344555555    67899999999999999999999977653

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PHA03098 kelch-like protein; Provisional

Probab=90.80  E-value=15  Score=35.55  Aligned_cols=64  Identities=9%  Similarity=0.159  Sum_probs=30.5

Q ss_pred             EEeecCCEEEEecCCC------cEEEEeCCCc-ceee---ecCCCCeeEEEEeCCCCEEEEEeCCC-----cEEEEecCC
Q 043707          128 SLAASGDLLYTGSDSK------NIRVWKNLKE-FSGF---KSNSGLVKAIIITGDSNKIFTGHQDG-----KIRIWKVSR  192 (347)
Q Consensus       128 ~l~~~~~~l~tg~~dg------~I~vwd~~~~-~~~~---~~h~~~V~~l~~sp~~~~l~s~~~Dg-----~I~vwd~~~  192 (347)
                      ++..++.+++.|+.++      .+..||.... ....   .........+.  -++..++.||.++     .+..||..+
T Consensus       290 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~  367 (534)
T PHA03098        290 SVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGE  367 (534)
T ss_pred             EEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCC
Confidence            3445666777776543      4666664322 1111   11111111222  2555777777652     355666654


Q ss_pred             C
Q 043707          193 K  193 (347)
Q Consensus       193 ~  193 (347)
                      .
T Consensus       368 ~  368 (534)
T PHA03098        368 S  368 (534)
T ss_pred             C
Confidence            4

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=90.51  E-value=4.4  Score=37.04  Aligned_cols=107  Identities=7%  Similarity=0.086  Sum_probs=61.4

Q ss_pred             CCeeEEEEcCCCCEEEEEe-----------CCC-cEEEEeCCC--CE--EEEEEecCCCcEEEEEeCCCCEEEEEeCCCc
Q 043707          236 DAVSCLSLNAEQGLLYSGS-----------WDK-TLKVWRISD--CK--CLESINAHDDAINSVVAGFDSLVFTGSADGT  299 (347)
Q Consensus       236 ~~V~~l~~~~~~~~l~s~s-----------~dg-~i~vwdl~~--~~--~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~  299 (347)
                      .....|+|.++|+++++-.           ..+ .|.+++-.+  ++  ....|...-.....|++.+++ |+++.....
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i   92 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDI   92 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeE
Confidence            4456799999999877753           223 677776543  33  233443333456788888889 555555543


Q ss_pred             EEEEEcccCCccc--eeeehhhhhc----cCCcEEEEEEccCCCEEEEec
Q 043707          300 VKVWRRELQGKGT--KHFLAQVLLK----QENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       300 I~vwd~~~~~~~~--~~~~~~~~~~----h~~~V~~l~~~p~~~~l~sgs  343 (347)
                      +++.|....++..  ...+...+..    +......++|.|||.+.++-+
T Consensus        93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            3444554222211  1222222322    234578999999998766554

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.33  E-value=5.5  Score=39.79  Aligned_cols=72  Identities=18%  Similarity=0.058  Sum_probs=51.3

Q ss_pred             CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC----------CEE---EEEE--------ecCCCcEEEEEeCCCC----E
Q 043707          236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISD----------CKC---LESI--------NAHDDAINSVVAGFDS----L  290 (347)
Q Consensus       236 ~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~----------~~~---~~~~--------~~h~~~v~~i~~~~~~----~  290 (347)
                      ..|..|.++++|.+|+..+..| |.|-.+..          ++.   .+++        ..+...|..+.|+|.+    .
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            4688899999999999888755 55555521          111   1111        1234578899999964    8


Q ss_pred             EEEEeCCCcEEEEEcccC
Q 043707          291 VFTGSADGTVKVWRRELQ  308 (347)
Q Consensus       291 l~s~~~dg~I~vwd~~~~  308 (347)
                      |+.-..|+++|+||+...
T Consensus       164 l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEEEecCCEEEEEecCCC
Confidence            888999999999999743

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.12  E-value=8.3  Score=33.50  Aligned_cols=101  Identities=7%  Similarity=0.050  Sum_probs=67.5

Q ss_pred             eeEEEEcCC-CCEEEEEeCCCc-EEEEeCCCCEEEEEEecCCCc--EEEEEeCCCC-EEEEEeC-----CCcEEEEEccc
Q 043707          238 VSCLSLNAE-QGLLYSGSWDKT-LKVWRISDCKCLESINAHDDA--INSVVAGFDS-LVFTGSA-----DGTVKVWRREL  307 (347)
Q Consensus       238 V~~l~~~~~-~~~l~s~s~dg~-i~vwdl~~~~~~~~~~~h~~~--v~~i~~~~~~-~l~s~~~-----dg~I~vwd~~~  307 (347)
                      -..|+++|. ..-++.+-.-|+ ..++|....+....+...++.  .-.=.|++|| +|++.-.     -|.|-|||.+.
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~  149 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE  149 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence            345778885 445555666666 568999888766665433321  1122589999 5554433     27899999973


Q ss_pred             CCccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          308 QGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       308 ~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                      .     ...+..+..|.-....+.|.+||+.|+.+.
T Consensus       150 ~-----fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         150 G-----FQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             c-----cceecccccCCcCcceeEEecCCcEEEEeC
Confidence            2     235666777877888999999999888764

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=89.96  E-value=2.4  Score=34.17  Aligned_cols=29  Identities=10%  Similarity=0.098  Sum_probs=25.2

Q ss_pred             cEEEEEeCCCC-------EEEEEeCCCcEEEEEccc
Q 043707          279 AINSVVAGFDS-------LVFTGSADGTVKVWRREL  307 (347)
Q Consensus       279 ~v~~i~~~~~~-------~l~s~~~dg~I~vwd~~~  307 (347)
                      .+..++|+|.|       +|++...++.|.||....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            68899999965       899999999999998763

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PHA02713 hypothetical protein; Provisional

Probab=89.81  E-value=4.7  Score=39.22  Aligned_cols=61  Identities=2%  Similarity=0.081  Sum_probs=35.7

Q ss_pred             CCCEEEEEeCC------CcEEEEeCCC---CEEEEEEecCCCcEEEEEeCCCCEEEEEeCCC--cEEEEEccc
Q 043707          246 EQGLLYSGSWD------KTLKVWRISD---CKCLESINAHDDAINSVVAGFDSLVFTGSADG--TVKVWRREL  307 (347)
Q Consensus       246 ~~~~l~s~s~d------g~i~vwdl~~---~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg--~I~vwd~~~  307 (347)
                      ++.+.+.|+.+      ..+..||..+   ...+..+.........+.. .+.+.++||.|+  .+..||..+
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~-~~~iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH-DNTIMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE-CCEEEEEeeecceeehhhcCccc
Confidence            35666667654      2367888876   3444555443333333333 334777888888  777777764

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=89.68  E-value=17  Score=33.67  Aligned_cols=105  Identities=12%  Similarity=0.042  Sum_probs=63.0

Q ss_pred             CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCE-----EEEEEecC--CCcEEEEEeCCCCEEEEEeCCCcEEEEEccc
Q 043707          235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK-----CLESINAH--DDAINSVVAGFDSLVFTGSADGTVKVWRREL  307 (347)
Q Consensus       235 ~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~-----~~~~~~~h--~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~  307 (347)
                      ...+..+.+.+++.+++++ .+|.+ +|....++     ........  ...+..+.+.+++.+++++.+|.+....-  
T Consensus       280 ~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D--  355 (398)
T PLN00033        280 ARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTD--  355 (398)
T ss_pred             ccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCC--
Confidence            4557888999888887766 45654 34444443     22322221  23488899998887888888887766532  


Q ss_pred             CCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          308 QGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       308 ~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      .++  .......-..-......+.|.++++-+++| .+|
T Consensus       356 ~G~--tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G  391 (398)
T PLN00033        356 GGK--SWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDG  391 (398)
T ss_pred             CCc--ceeEccccCCCCcceeEEEEcCCCceEEEe-CCc
Confidence            233  222222112234568899998776666555 344

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=89.22  E-value=8.2  Score=29.43  Aligned_cols=113  Identities=13%  Similarity=0.197  Sum_probs=69.6

Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC-
Q 043707          167 IIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA-  245 (347)
Q Consensus       167 l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-  245 (347)
                      -+|......|+.+..-|+|.|.+..........                         .......+.-...|++|+-.+ 
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~-------------------------~~~~i~~LNin~~italaaG~l   58 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGR-------------------------QDSDISFLNINQEITALAAGRL   58 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCcccccccc-------------------------ccCceeEEECCCceEEEEEEec
Confidence            355555567888888899999987654321111                         011122233566788876544 


Q ss_pred             ----CCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCC----CCEEEEEeCCCcEEEEEcc
Q 043707          246 ----EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGF----DSLVFTGSADGTVKVWRRE  306 (347)
Q Consensus       246 ----~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~----~~~l~s~~~dg~I~vwd~~  306 (347)
                          +...|+.|+ ...+..||+....-+.....+ +.|+++.+..    +.-++..+.+..|.-||.+
T Consensus        59 ~~~~~~D~LliGt-~t~llaYDV~~N~d~Fyke~~-DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~  125 (136)
T PF14781_consen   59 KPDDGRDCLLIGT-QTSLLAYDVENNSDLFYKEVP-DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYE  125 (136)
T ss_pred             CCCCCcCEEEEec-cceEEEEEcccCchhhhhhCc-cceeEEEEEecCCCCCcEEEECceEEEEEeCCC
Confidence                356788887 457999999877665444433 5678887632    2245555566777777765

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=88.71  E-value=3.2  Score=24.03  Aligned_cols=32  Identities=19%  Similarity=0.214  Sum_probs=24.8

Q ss_pred             CCCCEEEEEe-CCCcEEEEeCCCCEEEEEEecC
Q 043707          245 AEQGLLYSGS-WDKTLKVWRISDCKCLESINAH  276 (347)
Q Consensus       245 ~~~~~l~s~s-~dg~i~vwdl~~~~~~~~~~~h  276 (347)
                      |+++.|+++. .+++|.++|..+++.+..+...
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg   33 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG   33 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence            4667666665 4789999999999888887753

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=88.38  E-value=14  Score=33.31  Aligned_cols=26  Identities=12%  Similarity=0.266  Sum_probs=21.1

Q ss_pred             CeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707          163 LVKAIIITGDSNKIFTGHQDGKIRIWK  189 (347)
Q Consensus       163 ~V~~l~~sp~~~~l~s~~~Dg~I~vwd  189 (347)
                      ..+.|+|.|+++.|+ +-..|.|++++
T Consensus         3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~   28 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLV-AERSGRIWVVD   28 (331)
T ss_dssp             SEEEEEEETTSCEEE-EETTTEEEEEE
T ss_pred             CceEEEEeCCCcEEE-EeCCceEEEEe
Confidence            357899999986655 56699999999

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=88.16  E-value=26  Score=33.87  Aligned_cols=54  Identities=20%  Similarity=0.238  Sum_probs=36.7

Q ss_pred             CcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCc
Q 043707          257 KTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGK  310 (347)
Q Consensus       257 g~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~  310 (347)
                      |.|.-+|+.+++.+-..+..............++++.+..||.++.+|.++++.
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~  494 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEE  494 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCE
Confidence            568888999998776665322212222222345778888899999999998764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=87.49  E-value=24  Score=32.78  Aligned_cols=88  Identities=16%  Similarity=0.215  Sum_probs=40.0

Q ss_pred             CCcEEEEeCCCCEEEEEEecCCC--cEEEEEeCC--CC--EEEEEeCCCcEEEEEcccCCccc-e------------eee
Q 043707          256 DKTLKVWRISDCKCLESINAHDD--AINSVVAGF--DS--LVFTGSADGTVKVWRRELQGKGT-K------------HFL  316 (347)
Q Consensus       256 dg~i~vwdl~~~~~~~~~~~h~~--~v~~i~~~~--~~--~l~s~~~dg~I~vwd~~~~~~~~-~------------~~~  316 (347)
                      ..++.+||+.+.+.++++.--..  ....|.|..  +.  -++.+.-..+|..|-....+.=. +            ..+
T Consensus       221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l  300 (461)
T PF05694_consen  221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL  300 (461)
T ss_dssp             --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred             cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence            56799999999999999975433  344566643  33  23333344455555442222100 0            000


Q ss_pred             ---hhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          317 ---AQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       317 ---~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                         ++.+.+-..-|++|..+.|.++|+.+.
T Consensus       301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~  330 (461)
T PF05694_consen  301 PEMLKPFGAVPPLITDILISLDDRFLYVSN  330 (461)
T ss_dssp             -GGGGGG-EE------EEE-TTS-EEEEEE
T ss_pred             cccccccccCCCceEeEEEccCCCEEEEEc
Confidence               011111134589999999999998765

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=86.90  E-value=18  Score=30.61  Aligned_cols=98  Identities=10%  Similarity=0.148  Sum_probs=57.5

Q ss_pred             eeEEEEcCCCCEEE-EEeCCCcEEEEe--CCCCE-----EEEEEecC---CC-cEEEEEeCCCC-EEEEEeCCCcEEEEE
Q 043707          238 VSCLSLNAEQGLLY-SGSWDKTLKVWR--ISDCK-----CLESINAH---DD-AINSVVAGFDS-LVFTGSADGTVKVWR  304 (347)
Q Consensus       238 V~~l~~~~~~~~l~-s~s~dg~i~vwd--l~~~~-----~~~~~~~h---~~-~v~~i~~~~~~-~l~s~~~dg~I~vwd  304 (347)
                      -+.++|+.+.+.++ +-+.+-+|.-||  +.+|.     .+..++..   +. ..-.++...+| +.++.-..++|...|
T Consensus       160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d  239 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD  239 (310)
T ss_pred             CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence            35688888766554 455677787788  55543     33333321   11 11122334455 555666788999999


Q ss_pred             cccCCccceeeehhhhhccCCcEEEEEEccC-CCEEEE
Q 043707          305 RELQGKGTKHFLAQVLLKQENAITALAVNQE-SAVVYC  341 (347)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~-~~~l~s  341 (347)
                      ..+++      ++..+.-....|+++||--. -..|++
T Consensus       240 p~tGK------~L~eiklPt~qitsccFgGkn~d~~yv  271 (310)
T KOG4499|consen  240 PTTGK------ILLEIKLPTPQITSCCFGGKNLDILYV  271 (310)
T ss_pred             CCCCc------EEEEEEcCCCceEEEEecCCCccEEEE
Confidence            87654      44555555778999999643 244443

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=86.48  E-value=4  Score=39.55  Aligned_cols=38  Identities=18%  Similarity=0.393  Sum_probs=27.6

Q ss_pred             CCeeEEEEeC----CCCEEEEEeCCCcEEEEecCCCCCceee
Q 043707          162 GLVKAIIITG----DSNKIFTGHQDGKIRIWKVSRKNPSVHK  199 (347)
Q Consensus       162 ~~V~~l~~sp----~~~~l~s~~~Dg~I~vwd~~~~~~~~~~  199 (347)
                      ..+..++++.    +..++++.+.|+++|+||+.+++.....
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            3455666666    6679999999999999999999874433

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=86.41  E-value=25  Score=31.87  Aligned_cols=98  Identities=14%  Similarity=0.198  Sum_probs=50.3

Q ss_pred             EEEEc-CC-CCEEEEEeCCCcEE--EEeCCCCEEEEEEecCCCcEEE-EEeCCCC--EEEEEeCC--CcEEEEEcccC-C
Q 043707          240 CLSLN-AE-QGLLYSGSWDKTLK--VWRISDCKCLESINAHDDAINS-VVAGFDS--LVFTGSAD--GTVKVWRRELQ-G  309 (347)
Q Consensus       240 ~l~~~-~~-~~~l~s~s~dg~i~--vwdl~~~~~~~~~~~h~~~v~~-i~~~~~~--~l~s~~~d--g~I~vwd~~~~-~  309 (347)
                      ...+. ++ ..+|.....||.-+  +++...+. ...+....-.|.. +.+.+++  +++++..+  ..-.||.+... +
T Consensus       239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~  317 (353)
T PF00930_consen  239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG  317 (353)
T ss_dssp             EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET
T ss_pred             ccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC
Confidence            34443 54 44555555777644  45555554 4455545555655 4666665  45556553  35556655543 2


Q ss_pred             ccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          310 KGTKHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       310 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                      .  .   ...+......-..+.|+|++++++-..
T Consensus       318 ~--~---~~~LT~~~~~~~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  318 G--E---PKCLTCEDGDHYSASFSPDGKYYVDTY  346 (353)
T ss_dssp             T--E---EEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred             C--C---eEeccCCCCCceEEEECCCCCEEEEEE
Confidence            2  1   222222222227999999998876543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=85.91  E-value=8.3  Score=31.00  Aligned_cols=31  Identities=13%  Similarity=0.075  Sum_probs=25.0

Q ss_pred             CCeeEEEEcCCC------CEEEEEeCCCcEEEEeCCC
Q 043707          236 DAVSCLSLNAEQ------GLLYSGSWDKTLKVWRISD  266 (347)
Q Consensus       236 ~~V~~l~~~~~~------~~l~s~s~dg~i~vwdl~~  266 (347)
                      ..|..++|+|.|      -+|++...++.+.||.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            378999999953      3688888899999998653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=85.76  E-value=32  Score=32.44  Aligned_cols=110  Identities=8%  Similarity=0.025  Sum_probs=62.1

Q ss_pred             cCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCE--EEEEEe-----cCCCcEEEEEeCCCC-------EEEEEe----
Q 043707          234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK--CLESIN-----AHDDAINSVVAGFDS-------LVFTGS----  295 (347)
Q Consensus       234 h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~--~~~~~~-----~h~~~v~~i~~~~~~-------~l~s~~----  295 (347)
                      .-...+.|+|.|++++|++--..|+|++++..++.  .+..+.     ..+.....|+++|+-       +|+..-    
T Consensus        28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~  107 (454)
T TIGR03606        28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN  107 (454)
T ss_pred             CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence            45667889999999877776556999999865543  222221     135678899999873       344331    


Q ss_pred             ------CCCcEEEEEcccCCc--cceeeehhhh---hccCCcEEEEEEccCCCEEEEecCC
Q 043707          296 ------ADGTVKVWRRELQGK--GTKHFLAQVL---LKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       296 ------~dg~I~vwd~~~~~~--~~~~~~~~~~---~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                            ....|.-|.+.....  .....++..+   ..|.  -..|+|.|||.+.++.++.
T Consensus       108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECCC
Confidence                  122343344431110  0011122222   1232  3478899999877766654

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=85.20  E-value=39  Score=33.01  Aligned_cols=93  Identities=18%  Similarity=0.286  Sum_probs=45.5

Q ss_pred             CCCEEEEEeCCCc-----EEEEeCCCCE--EEEEEecCCCcEEEEEeCCCC-EEEEEeCCC------cEEEEEcccCCcc
Q 043707          246 EQGLLYSGSWDKT-----LKVWRISDCK--CLESINAHDDAINSVVAGFDS-LVFTGSADG------TVKVWRRELQGKG  311 (347)
Q Consensus       246 ~~~~l~s~s~dg~-----i~vwdl~~~~--~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg------~I~vwd~~~~~~~  311 (347)
                      +|.+.++|+.||.     +-.||.++.+  .+..+.......-.+.+  ++ +.++||.++      ++..||..+.   
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~---  454 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETN---  454 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCC---
Confidence            5678888888865     6667765443  22222211112222222  45 555666443      5677777643   


Q ss_pred             ceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          312 TKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       312 ~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                       .+.....+........ ++. -++...+.||.||
T Consensus       455 -~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~  486 (571)
T KOG4441|consen  455 -TWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDG  486 (571)
T ss_pred             -ceeecCCcccccccce-EEE-ECCEEEEECCccC
Confidence             2222222222222222 222 2567777788776

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.19  E-value=16  Score=34.52  Aligned_cols=91  Identities=10%  Similarity=0.075  Sum_probs=49.8

Q ss_pred             CeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEee---cceeeeeecCCCee
Q 043707          163 LVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRR---NRNVLKIRHYDAVS  239 (347)
Q Consensus       163 ~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~V~  239 (347)
                      .|..+..++.|..++-.+.+|.+.++=-+.-.......               +++..+..+.   ..+.......-.+.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~e---------------Dgk~~v~CRt~~i~~~~ftss~~ltl~  169 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFE---------------DGKSTVNCRTTPVAERFFTSSTSLTLK  169 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceec---------------CCCceEEEEeecccceeeccCCceeee
Confidence            57788889999999999999976654211100000000               0000000000   00111111222356


Q ss_pred             EEEEcCCC---CEEEEEeCCCcEEEEeCCCCE
Q 043707          240 CLSLNAEQ---GLLYSGSWDKTLKVWRISDCK  268 (347)
Q Consensus       240 ~l~~~~~~---~~l~s~s~dg~i~vwdl~~~~  268 (347)
                      ..+|+|+.   ..|+.-+.|.+|++||+....
T Consensus       170 Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  170 QAAWHPSSILDPHLVLLTSDNVIRIYSLSEPT  201 (741)
T ss_pred             eccccCCccCCceEEEEecCcEEEEEecCCcc
Confidence            78899964   567777789999999997544

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=84.50  E-value=22  Score=29.56  Aligned_cols=64  Identities=13%  Similarity=0.121  Sum_probs=34.8

Q ss_pred             CcEEEEEeCCC-CEEEEEeCCCcEEEEEcccCCc-cce----eeehhhhhccCC-cEEEEEEccCCCEEEEecC
Q 043707          278 DAINSVVAGFD-SLVFTGSADGTVKVWRRELQGK-GTK----HFLAQVLLKQEN-AITALAVNQESAVVYCGSS  344 (347)
Q Consensus       278 ~~v~~i~~~~~-~~l~s~~~dg~I~vwd~~~~~~-~~~----~~~~~~~~~h~~-~V~~l~~~p~~~~l~sgs~  344 (347)
                      ..+.+++..|- |.|+.|+ ++++.+|.+..... ..+    ......+.-|.+ .+..+++.  +.++|..+.
T Consensus       135 ~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic--~~yiA~~s~  205 (215)
T PF14761_consen  135 EPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAIC--EGYIAVMSD  205 (215)
T ss_pred             CCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheecCceEEEEEEE--eeEEEEecC
Confidence            45678887775 5666665 56889998864322 000    011111122222 36677776  567776654

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=84.37  E-value=0.16  Score=46.75  Aligned_cols=135  Identities=11%  Similarity=0.114  Sum_probs=86.4

Q ss_pred             eeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEE
Q 043707          164 VKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSL  243 (347)
Q Consensus       164 V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  243 (347)
                      -....|-+++.-++.++.+..|..||-........                                  .-......++|
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~----------------------------------n~tg~aldm~w   82 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVILEL----------------------------------NPTGKALDMAW   82 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhhcceeccc----------------------------------CCchhHhhhhh
Confidence            34567888777788888888888888654321100                                  12334455777


Q ss_pred             cCCCCEEE-EEeCCCcEEEEeCCCCEE--EEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhh
Q 043707          244 NAEQGLLY-SGSWDKTLKVWRISDCKC--LESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQV  319 (347)
Q Consensus       244 ~~~~~~l~-s~s~dg~i~vwdl~~~~~--~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~  319 (347)
                      .-++..++ .+-..+.+.+||+.+...  +..--.|....  +.|++.. .++.+-..|.+.|++-.+...      ...
T Consensus        83 DkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~------iiv  154 (615)
T KOG2247|consen   83 DKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRR------IIV  154 (615)
T ss_pred             ccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH--HhhccCCccccccccccceEEEeccchhh------hhh
Confidence            77665544 455578999999975321  11111222222  6788766 777788899999998874332      334


Q ss_pred             hhccCCcEEEEEEccCCCEEE
Q 043707          320 LLKQENAITALAVNQESAVVY  340 (347)
Q Consensus       320 ~~~h~~~V~~l~~~p~~~~l~  340 (347)
                      ...|...+++++|.+++..+.
T Consensus       155 ~Gkh~RRgtq~av~lEd~vil  175 (615)
T KOG2247|consen  155 MGKHQRRGTQIAVTLEDYVIL  175 (615)
T ss_pred             hcccccceeEEEecccceeee
Confidence            445888999999999865544

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=84.23  E-value=19  Score=33.67  Aligned_cols=30  Identities=27%  Similarity=0.469  Sum_probs=22.7

Q ss_pred             CcEEEEEeCCCC-EEEEEeCCCcEEEEEccc
Q 043707          278 DAINSVVAGFDS-LVFTGSADGTVKVWRREL  307 (347)
Q Consensus       278 ~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~  307 (347)
                      ..|.+++..+.. .+++...+|.|.+|++..
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            348888887654 999999999999999975

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=83.41  E-value=19  Score=33.46  Aligned_cols=37  Identities=11%  Similarity=0.083  Sum_probs=30.6

Q ss_pred             cCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCC
Q 043707          159 SNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNP  195 (347)
Q Consensus       159 ~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~  195 (347)
                      .....+.+|+.+|.+++.++...=|.|.++|+..+..
T Consensus       305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v  341 (415)
T PF14655_consen  305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV  341 (415)
T ss_pred             cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh
Confidence            3445688999999998888887779999999988753

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.08  E-value=33  Score=32.05  Aligned_cols=117  Identities=9%  Similarity=0.099  Sum_probs=71.5

Q ss_pred             CCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCee
Q 043707          160 NSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVS  239 (347)
Q Consensus       160 h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  239 (347)
                      ..++|.+|.|++|.+.|+.--.|.+|.+++....+........+-                            .....|.
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck----------------------------~k~~~Il  116 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECK----------------------------TKNANIL  116 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhc----------------------------cCcceeE
Confidence            457999999999999999999999999998854432211110000                            1234477


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCC-CEEEEEEecCCCcEEEEEeCCCC---EEEEEeCCCcEEEEEcc
Q 043707          240 CLSLNAEQGLLYSGSWDKTLKVWRISD-CKCLESINAHDDAINSVVAGFDS---LVFTGSADGTVKVWRRE  306 (347)
Q Consensus       240 ~l~~~~~~~~l~s~s~dg~i~vwdl~~-~~~~~~~~~h~~~v~~i~~~~~~---~l~s~~~dg~I~vwd~~  306 (347)
                      ...|... .-++.-...| +-+|-+.. .+.++..+.|...|+--.|.++.   +|+++-..+++.=+.++
T Consensus       117 GF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~  185 (657)
T KOG2377|consen  117 GFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFR  185 (657)
T ss_pred             EEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEe
Confidence            7778765 3444444333 66665533 23455556677778777888876   33344345554444443

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.48  E-value=17  Score=34.47  Aligned_cols=72  Identities=8%  Similarity=-0.034  Sum_probs=48.5

Q ss_pred             CCeeEEEEcCCCCEEEEEeCCCcEEEEe---------CCCCEEEEE---Ee--------cCCCcEEEEEeCCCC----EE
Q 043707          236 DAVSCLSLNAEQGLLYSGSWDKTLKVWR---------ISDCKCLES---IN--------AHDDAINSVVAGFDS----LV  291 (347)
Q Consensus       236 ~~V~~l~~~~~~~~l~s~s~dg~i~vwd---------l~~~~~~~~---~~--------~h~~~v~~i~~~~~~----~l  291 (347)
                      -.|..+..++.|..++..+.+|.+.++=         ++++++.-.   +.        ...-.+..+.|+|+.    .|
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence            4577888899999988888888655443         123432211   10        111235677899975    77


Q ss_pred             EEEeCCCcEEEEEccc
Q 043707          292 FTGSADGTVKVWRREL  307 (347)
Q Consensus       292 ~s~~~dg~I~vwd~~~  307 (347)
                      ..-..|..|++||+..
T Consensus       184 ~iL~sdnviRiy~lS~  199 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSLSE  199 (741)
T ss_pred             EEEecCcEEEEEecCC
Confidence            8888999999999863

>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=81.85  E-value=9.8  Score=37.91  Aligned_cols=142  Identities=11%  Similarity=0.117  Sum_probs=83.3

Q ss_pred             EEEEecCCCcEEEEeCC-Cc-----ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeeccccccc
Q 043707          135 LLYTGSDSKNIRVWKNL-KE-----FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFK  208 (347)
Q Consensus       135 ~l~tg~~dg~I~vwd~~-~~-----~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~  208 (347)
                      .+..|+.++.|.++... ..     ...+......+.++.+++.  -+..|..||++-.+--..... ....    |.  
T Consensus       549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~--Slgagl~dgt~a~y~rap~gS-wd~e----p~--  619 (925)
T KOG3522|consen  549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG--SLGAGLIDGTLAVYGRAPSGS-WDGE----PN--  619 (925)
T ss_pred             cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc--ccccCccCCccccccCCCCCC-CCCC----Cc--
Confidence            56778888888888633 11     1122233456777777665  566666777766542211100 0000    00  


Q ss_pred             ceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecC---CCcEEEEEe
Q 043707          209 DYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH---DDAINSVVA  285 (347)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h---~~~v~~i~~  285 (347)
                                          ........+|..+++..|   ++-++.+|.+.|+...+......+..|   ...|+++..
T Consensus       620 --------------------~~~~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~  676 (925)
T KOG3522|consen  620 --------------------ISIPTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLY  676 (925)
T ss_pred             --------------------cccccCCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEe
Confidence                                000013456777777654   566777999999998876655555444   457899998


Q ss_pred             CCCCEEEEEeCCCcEEEEEcccC
Q 043707          286 GFDSLVFTGSADGTVKVWRRELQ  308 (347)
Q Consensus       286 ~~~~~l~s~~~dg~I~vwd~~~~  308 (347)
                      ...+..++-.....+++++.++.
T Consensus       677 ~~~gVwvafasG~~~rlfhtetl  699 (925)
T KOG3522|consen  677 LDNGVWVAFASGDEERLFHTETL  699 (925)
T ss_pred             eCCceEEEEcCCCEEEEeccccc
Confidence            87785555555556777766543

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=81.25  E-value=70  Score=32.94  Aligned_cols=211  Identities=11%  Similarity=0.079  Sum_probs=104.8

Q ss_pred             cccEEEEeecCCEEEEecCCCcEEEEeCCCc--------ceeee--cCCCCeeEEEEeCC--CCEEEEEeCC---CcEEE
Q 043707          123 EGHIYSLAASGDLLYTGSDSKNIRVWKNLKE--------FSGFK--SNSGLVKAIIITGD--SNKIFTGHQD---GKIRI  187 (347)
Q Consensus       123 ~~~V~~l~~~~~~l~tg~~dg~I~vwd~~~~--------~~~~~--~h~~~V~~l~~sp~--~~~l~s~~~D---g~I~v  187 (347)
                      .+.+..+++.++.+...-.+|.+++....+.        ...|.  -..--|.+++|.-+  ...+++...|   ..++-
T Consensus       115 ~g~~~~VDp~~R~Igl~~yqgl~~vIp~d~~~sht~~s~l~~fn~rfdel~v~Di~fly~~s~pt~~vly~Ds~~~Hv~~  194 (1096)
T KOG1897|consen  115 NGQILLVDPKGRVIGLHLYQGLFKVIPIDSDESHTGGSLLKAFNVRFDELNVYDIKFLYGCSDPTLAVLYKDSDGRHVKT  194 (1096)
T ss_pred             CceEEEECCCCcEEEEEeecCeEEEEEecccccccCcccccccccccCcceEEEEEEEcCCCCCceEEEEEcCCCcEEEE
Confidence            3456667788888888888888887653321        11111  11224778887542  2345555444   45777


Q ss_pred             EecCCCCCceeeeec--ccccccceEEeccCC-CeEEEE--------eecceeeee---ecCCC-eeEEEEcCCCCEEEE
Q 043707          188 WKVSRKNPSVHKRVG--SLPTFKDYVKSSVNP-KNYVEV--------RRNRNVLKI---RHYDA-VSCLSLNAEQGLLYS  252 (347)
Q Consensus       188 wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~---~h~~~-V~~l~~~~~~~~l~s  252 (347)
                      ++++-+.....+...  ........+..-..+ ..++..        .........   ..... +..-..+.++..++.
T Consensus       195 yelnl~~ke~~~~~w~~~v~~~a~~li~VP~~~gGvlV~ge~~I~Y~~~~~~~ai~p~~~~~~t~~~~~~v~~~~~~yLl  274 (1096)
T KOG1897|consen  195 YELNLRDKEFVKGPWSNNVDNGASMLIPVPSPIGGVLVIGEEFIVYMSGDNFVAIAPLTAEQSTIVCYGRVDLQGSRYLL  274 (1096)
T ss_pred             EEeccchhhccccccccccccCCceeeecCCCCceEEEEeeeEEEEeeCCceeEecccccCCceEEEcccccCCccEEEE
Confidence            776655322221110  011111111110011 111111        000000000   11111 111234557888899


Q ss_pred             EeCCCcEEEEeCC-CCEEEEE--E----ecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccce-eeehhhhhccC
Q 043707          253 GSWDKTLKVWRIS-DCKCLES--I----NAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTK-HFLAQVLLKQE  324 (347)
Q Consensus       253 ~s~dg~i~vwdl~-~~~~~~~--~----~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~-~~~~~~~~~h~  324 (347)
                      +..+|.+...-+. +++....  +    -+...-..|+..-++|.+++|+.-|.=.+-.+.+..+... ..+... ...-
T Consensus       275 ~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet-~~NL  353 (1096)
T KOG1897|consen  275 GDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNGVLFVGSRFGDSQLIKLNTEPDVGSYVVILET-FVNL  353 (1096)
T ss_pred             ecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCceEEEeccCCceeeEEccccCCCCchhhhhhh-cccc
Confidence            9999998776655 4443322  1    1334455677777889999999888778887776544211 112222 2234


Q ss_pred             CcEEEEEEcc
Q 043707          325 NAITALAVNQ  334 (347)
Q Consensus       325 ~~V~~l~~~p  334 (347)
                      ++|.+++...
T Consensus       354 gPI~Dm~Vvd  363 (1096)
T KOG1897|consen  354 GPIVDMCVVD  363 (1096)
T ss_pred             cceeeEEEEe
Confidence            5888877654

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=80.48  E-value=31  Score=32.11  Aligned_cols=65  Identities=8%  Similarity=0.137  Sum_probs=30.4

Q ss_pred             cEEEEEeCCCC-EE-EEEeCCCcEEEEEcccCCcccee--eeh-hh--------hh--ccCCcEEEEEEccCCCEEEEec
Q 043707          279 AINSVVAGFDS-LV-FTGSADGTVKVWRRELQGKGTKH--FLA-QV--------LL--KQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       279 ~v~~i~~~~~~-~l-~s~~~dg~I~vwd~~~~~~~~~~--~~~-~~--------~~--~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                      -|+.|..+.|. +| +++-.+|.|+.||+....+....  ..+ ..        ..  .-.+...-|..+-||+.|+...
T Consensus       313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            46888888876 44 45567999999999754331000  000 00        00  1123456788889998888765

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=80.43  E-value=25  Score=33.99  Aligned_cols=115  Identities=12%  Similarity=0.057  Sum_probs=61.7

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEE
Q 043707          173 SNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYS  252 (347)
Q Consensus       173 ~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s  252 (347)
                      +..++.++.++.|.-.|..+++..-.............                     ......-..+++.  +..++.
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~---------------------~~~~~~~rg~av~--~~~v~v  125 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPV---------------------MCCDVVNRGVALY--DGKVFF  125 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccc---------------------cccccccccceEE--CCEEEE
Confidence            34777777788888889888875443332110000000                     0000000112222  346777


Q ss_pred             EeCCCcEEEEeCCCCEEEEEEecCCCc-EEEEEeCC---CCEEEEEeC------CCcEEEEEcccCCc
Q 043707          253 GSWDKTLKVWRISDCKCLESINAHDDA-INSVVAGF---DSLVFTGSA------DGTVKVWRRELQGK  310 (347)
Q Consensus       253 ~s~dg~i~vwdl~~~~~~~~~~~h~~~-v~~i~~~~---~~~l~s~~~------dg~I~vwd~~~~~~  310 (347)
                      ++.|+.+.-.|.++++.+-.+...... -..+.-.|   ++.++.+..      +|.|.-+|.++++.
T Consensus       126 ~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~  193 (527)
T TIGR03075       126 GTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKL  193 (527)
T ss_pred             EcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCce
Confidence            888999999999999988665421110 00111122   455555432      67888888876543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	347
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		3e-12
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		6e-09
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-06
2gnq_A	336	Structure Of Wdr5 Length = 336		6e-09
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-06
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		6e-09
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		9e-09
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-06
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		9e-09
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-06
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-08
2h9l_A	329	Wdr5delta23 Length = 329		1e-08
2h9l_A	329	Wdr5delta23 Length = 329		1e-06
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-08
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-06
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-08
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-06
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-08
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-06
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-08
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-06
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-08
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-06
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-08
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-06
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-08
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-06
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-08
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-06
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-08
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-06
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		2e-08
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-08
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-06
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-08
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-06
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-08
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-06
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		3e-08
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-06
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-04
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		4e-06
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		8e-06
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-05
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		5e-05
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		4e-04
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		7e-05
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		9e-05
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		9e-05
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		9e-05
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		9e-05
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-04
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		2e-04
4g56_B	357	Crystal Structure Of Full Length Prmt5/mep50 Comple		2e-04
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		2e-04
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		5e-04

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 92/198 (46%), Gaps = 31/198 (15%)
Query: 133 GDLLYTGSDSKNIRVWKNLKEFSGF-------KSNSGLVKAIIITGDSNKIFTGHQDGKI 185
            D++ + S  K+I +WK  K+   +         +S  V+ ++++ D     +G  DG++
Sbjct: 395 ADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL 454
Query: 186 RIWKVSRKNPSVHKRVGSLPTFKDY--VKSSVNPKNYVEVRRNRNVLKIR---------- 233
           R+W ++    S  + VG     KD   V  S++ +  V   R+R +              
Sbjct: 455 RLWDLA-AGVSTRRFVGHT---KDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTIS 510
Query: 234 -----HYDAVSCL--SLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAG 286
                H D VSC+  S N  Q  + S SWDKT+KVW +S+CK   ++  H   +++V   
Sbjct: 511 EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVS 570
Query: 287 FD-SLVFTGSADGTVKVW 303
            D SL  +G  DG V +W
Sbjct: 571 PDGSLCASGGKDGVVLLW 588

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 98/256 (38%), Gaps = 54/256 (21%)
Query: 124 GH---IYSLAASGD--LLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKI 176
           GH   I  +A S D  LL + SD K +++W   + K     K +S  V        SN I
Sbjct: 85  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 144
Query: 177 FTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYD 236
            +G  D  +RIW V        K + +LP   D       P + V   R+ +++    YD
Sbjct: 145 VSGSFDESVRIWDVK-----TGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYD 192
Query: 237 A-----------------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI 273
                                   VS +  +     + + + D TLK+W  S  KCL++ 
Sbjct: 193 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 252
Query: 274 NAHDDAINSVVAGFD----SLVFTGSADGTVKVWR-------RELQGKGTKHFLAQVLLK 322
             H +    + A F       + +GS D  V +W        ++LQG  T   ++     
Sbjct: 253 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHP 311
Query: 323 QENAITALAVNQESAV 338
            EN I + A+  +  +
Sbjct: 312 TENIIASAALENDKTI 327

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
           H   +S ++ +++  LL S S DKTLK+W +S  KCL+++  H + +      F+   +L
Sbjct: 86  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 143
Query: 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
           + +GS D +V++W  +  GK  K      L    + ++A+  N++ +++   S DGL
Sbjct: 144 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGL 194

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 98/256 (38%), Gaps = 54/256 (21%)
Query: 124 GH---IYSLAASGD--LLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKI 176
           GH   I  +A S D  LL + SD K +++W   + K     K +S  V        SN I
Sbjct: 87  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 146
Query: 177 FTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYD 236
            +G  D  +RIW V        K + +LP   D       P + V   R+ +++    YD
Sbjct: 147 VSGSFDESVRIWDVK-----TGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYD 194
Query: 237 A-----------------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI 273
                                   VS +  +     + + + D TLK+W  S  KCL++ 
Sbjct: 195 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 254
Query: 274 NAHDDAINSVVAGFD----SLVFTGSADGTVKVWR-------RELQGKGTKHFLAQVLLK 322
             H +    + A F       + +GS D  V +W        ++LQG  T   ++     
Sbjct: 255 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHP 313
Query: 323 QENAITALAVNQESAV 338
            EN I + A+  +  +
Sbjct: 314 TENIIASAALENDKTI 329

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
           H   +S ++ +++  LL S S DKTLK+W +S  KCL+++  H + +      F+   +L
Sbjct: 88  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 145
Query: 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
           + +GS D +V++W  +  GK  K      L    + ++A+  N++ +++   S DGL
Sbjct: 146 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGL 196

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 100/224 (44%), Gaps = 28/224 (12%)
Query: 106 ENLLSSCNGLIGSIVRKEGHIYSLAASG---DLLYTGSDSKNIRVWKNLKEFSGF----- 157
           +++++    L G++    G +  +A +    D++ + S  K I +WK  ++ + +     
Sbjct: 21  QSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQR 80
Query: 158 --KSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSV 215
             + +S  V  ++I+ D     +G  DG +R+W ++    +  + VG          SS 
Sbjct: 81  ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT-TGTTTRRFVGHTKDVLSVAFSSD 139
Query: 216 NPKNYVEVRRNR-----NVLKI--------RHYDAVSCLSL--NAEQGLLYSGSWDKTLK 260
           N +  V   R++     N L +         H + VSC+    N+   ++ S  WDK +K
Sbjct: 140 N-RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 198
Query: 261 VWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVW 303
           VW +++CK   +   H   +N+V    D SL  +G  DG   +W
Sbjct: 199 VWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 96/251 (38%), Gaps = 51/251 (20%)
Query: 126 IYSLAASGD--LLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQ 181
           I  +A S D  LL + SD K +++W   + K     K +S  V        SN I +G  
Sbjct: 74  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 182 DGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA---- 237
           D  +RIW V        K + +LP   D       P + V   R+ +++    YD     
Sbjct: 134 DESVRIWDVK-----TGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 238 -------------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDD 278
                              VS +  +     + + + D TLK+W  S  KCL++   H +
Sbjct: 182 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 241
Query: 279 AINSVVAGFD----SLVFTGSADGTVKVWR-------RELQGKGTKHFLAQVLLKQENAI 327
               + A F       + +GS D  V +W        ++LQG  T   ++      EN I
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHPTENII 300
Query: 328 TALAVNQESAV 338
            + A+  +  +
Sbjct: 301 ASAALENDKTI 311

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
           H   +S ++ +++  LL S S DKTLK+W +S  KCL+++  H + +      F+   +L
Sbjct: 70  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 127
Query: 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
           + +GS D +V++W  +  GK  K      L    + ++A+  N++ +++   S DGL
Sbjct: 128 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGL 178

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 94/245 (38%), Gaps = 49/245 (20%)
Query: 130 AASGDLLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI 187
           ++  +LL + SD K +++W   + K     K +S  V        SN I +G  D  +RI
Sbjct: 80  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA---------- 237
           W V        K + +LP   D       P + V   R+ +++    YD           
Sbjct: 140 WDVK-----TGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 238 -------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284
                        VS +  +     + + + D TLK+W  S  KCL++   H +    + 
Sbjct: 188 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 247
Query: 285 AGFD----SLVFTGSADGTVKVWR-------RELQGKGTKHFLAQVLLKQENAITALAVN 333
           A F       + +GS D  V +W        ++LQG  T   ++      EN I + A+ 
Sbjct: 248 ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHPTENIIASAALE 306
Query: 334 QESAV 338
            +  +
Sbjct: 307 NDKTI 311

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
           H   +S ++ +++  LL S S DKTLK+W +S  KCL+++  H + +      F+   +L
Sbjct: 70  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 127
Query: 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
           + +GS D +V++W  +  GK  K   A       + ++A+  N++ +++   S DGL
Sbjct: 128 IVSGSFDESVRIWDVK-TGKCLKTLPA-----HSDPVSAVHFNRDGSLIVSSSYDGL 178

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 86/193 (44%), Gaps = 25/193 (12%)
Query: 134 DLLYTGSDSKNIRVWKNLKEFSGF-------KSNSGLVKAIIITGDSNKIFTGHQDGKIR 186
           D++ + S  K I +WK  ++ + +       + +S  V  ++I+ D     +G  DG +R
Sbjct: 29  DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 88
Query: 187 IWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNR-----NVLKI--------R 233
           +W ++    +  + VG          SS N +  V   R++     N L +         
Sbjct: 89  LWDLT-TGTTTRRFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKYTVQDES 146
Query: 234 HYDAVSCLSL--NAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SL 290
           H + VSC+    N+   ++ S  WDK +KVW +++CK   +   H   +N+V    D SL
Sbjct: 147 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSL 206
Query: 291 VFTGSADGTVKVW 303
             +G  DG   +W
Sbjct: 207 CASGGKDGQAMLW 219

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 94/245 (38%), Gaps = 49/245 (20%)
Query: 130 AASGDLLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI 187
           ++  +LL + SD K +++W   + K     K +S  V        SN I +G  D  +RI
Sbjct: 91  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 150
Query: 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA---------- 237
           W V        K + +LP   D       P + V   R+ +++    YD           
Sbjct: 151 WDVK-----TGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 198
Query: 238 -------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284
                        VS +  +     + + + D TLK+W  S  KCL++   H +    + 
Sbjct: 199 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 258
Query: 285 AGFD----SLVFTGSADGTVKVWR-------RELQGKGTKHFLAQVLLKQENAITALAVN 333
           A F       + +GS D  V +W        ++LQG  T   ++      EN I + A+ 
Sbjct: 259 ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHPTENIIASAALE 317
Query: 334 QESAV 338
            +  +
Sbjct: 318 NDKTI 322

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
           H   +S ++ +++  LL S S DKTLK+W +S  KCL+++  H + +      F+   +L
Sbjct: 81  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 138
Query: 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
           + +GS D +V++W  +  GK  K      L    + ++A+  N++ +++   S DGL
Sbjct: 139 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGL 189

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 96/251 (38%), Gaps = 51/251 (20%)
Query: 126 IYSLAASGD--LLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQ 181
           I  +A S D  LL + SD K +++W   + K     K +S  V        SN I +G  
Sbjct: 68  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127
Query: 182 DGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA---- 237
           D  +RIW V        K + +LP   D       P + V   R+ +++    YD     
Sbjct: 128 DESVRIWDVK-----TGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRI 175
Query: 238 -------------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDD 278
                              VS +  +     + + + D TLK+W  S  KCL++   H +
Sbjct: 176 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 235
Query: 279 AINSVVAGFD----SLVFTGSADGTVKVWR-------RELQGKGTKHFLAQVLLKQENAI 327
               + A F       + +GS D  V +W        ++LQG  T   ++      EN I
Sbjct: 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHPTENII 294
Query: 328 TALAVNQESAV 338
            + A+  +  +
Sbjct: 295 ASAALENDKTI 305

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
           H   +S ++ +++  LL S S DKTLK+W +S  KCL+++  H + +      F+   +L
Sbjct: 64  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 121
Query: 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
           + +GS D +V++W  +  GK  K      L    + ++A+  N++ +++   S DGL
Sbjct: 122 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGL 172

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 96/251 (38%), Gaps = 51/251 (20%)
Query: 126 IYSLAASGD--LLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQ 181
           I  +A S D  LL + SD K +++W   + K     K +S  V        SN I +G  
Sbjct: 74  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 182 DGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA---- 237
           D  +RIW V        K + +LP   D       P + V   R+ +++    YD     
Sbjct: 134 DESVRIWDVK-----TGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 238 -------------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDD 278
                              VS +  +     + + + D TLK+W  S  KCL++   H +
Sbjct: 182 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 241
Query: 279 AINSVVAGFD----SLVFTGSADGTVKVWR-------RELQGKGTKHFLAQVLLKQENAI 327
               + A F       + +GS D  V +W        ++LQG  T   ++      EN I
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHPTENII 300
Query: 328 TALAVNQESAV 338
            + A+  +  +
Sbjct: 301 ASAALENDKTI 311

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
           H   +S ++ +++  LL S S DKTLK+W +S  KCL+++  H + +      F+   +L
Sbjct: 70  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 127
Query: 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
           + +GS D +V++W  +  GK  K      L    + ++A+  N++ +++   S DGL
Sbjct: 128 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGL 178

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 96/251 (38%), Gaps = 51/251 (20%)
Query: 126 IYSLAASGD--LLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQ 181
           I  +A S D  LL + SD K +++W   + K     K +S  V        SN I +G  
Sbjct: 73  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 132
Query: 182 DGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA---- 237
           D  +RIW V        K + +LP   D       P + V   R+ +++    YD     
Sbjct: 133 DESVRIWDVK-----TGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRI 180
Query: 238 -------------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDD 278
                              VS +  +     + + + D TLK+W  S  KCL++   H +
Sbjct: 181 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 240
Query: 279 AINSVVAGFD----SLVFTGSADGTVKVWR-------RELQGKGTKHFLAQVLLKQENAI 327
               + A F       + +GS D  V +W        ++LQG  T   ++      EN I
Sbjct: 241 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHPTENII 299
Query: 328 TALAVNQESAV 338
            + A+  +  +
Sbjct: 300 ASAALENDKTI 310

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
           H   +S ++ +++  LL S S DKTLK+W +S  KCL+++  H + +      F+   +L
Sbjct: 69  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 126
Query: 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
           + +GS D +V++W  +  GK  K      L    + ++A+  N++ +++   S DGL
Sbjct: 127 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGL 177

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 94/245 (38%), Gaps = 49/245 (20%)
Query: 130 AASGDLLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI 187
           ++  +LL + SD K +++W   + K     K +S  V        SN I +G  D  +RI
Sbjct: 74  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA---------- 237
           W V        K + +LP   D       P + V   R+ +++    YD           
Sbjct: 134 WDVK-----TGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Query: 238 -------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284
                        VS +  +     + + + D TLK+W  S  KCL++   H +    + 
Sbjct: 182 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 241
Query: 285 AGFD----SLVFTGSADGTVKVWR-------RELQGKGTKHFLAQVLLKQENAITALAVN 333
           A F       + +GS D  V +W        ++LQG  T   ++      EN I + A+ 
Sbjct: 242 ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHPTENIIASAALE 300
Query: 334 QESAV 338
            +  +
Sbjct: 301 NDKTI 305

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
           H   +S ++ +++  LL S S DKTLK+W +S  KCL+++  H + +      F+   +L
Sbjct: 64  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 121
Query: 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
           + +GS D +V++W  +  GK  K      L    + ++A+  N++ +++   S DGL
Sbjct: 122 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGL 172

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 96/251 (38%), Gaps = 51/251 (20%)
Query: 126 IYSLAASGD--LLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQ 181
           I  +A S D  LL + SD K +++W   + K     K +S  V        SN I +G  
Sbjct: 69  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 128
Query: 182 DGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA---- 237
           D  +RIW V        K + +LP   D       P + V   R+ +++    YD     
Sbjct: 129 DESVRIWDVK-----TGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRI 176
Query: 238 -------------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDD 278
                              VS +  +     + + + D TLK+W  S  KCL++   H +
Sbjct: 177 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 236
Query: 279 AINSVVAGFD----SLVFTGSADGTVKVWR-------RELQGKGTKHFLAQVLLKQENAI 327
               + A F       + +GS D  V +W        ++LQG  T   ++      EN I
Sbjct: 237 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHPTENII 295
Query: 328 TALAVNQESAV 338
            + A+  +  +
Sbjct: 296 ASAALENDKTI 306

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
           H   +S ++ +++  LL S S DKTLK+W +S  KCL+++  H + +      F+   +L
Sbjct: 65  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 122
Query: 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
           + +GS D +V++W  +  GK  K      L    + ++A+  N++ +++   S DGL
Sbjct: 123 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGL 173

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 94/245 (38%), Gaps = 49/245 (20%)
Query: 130 AASGDLLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI 187
           ++  +LL + SD K +++W   + K     K +S  V        SN I +G  D  +RI
Sbjct: 73  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 132
Query: 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA---------- 237
           W V        K + +LP   D       P + V   R+ +++    YD           
Sbjct: 133 WDVK-----TGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 180
Query: 238 -------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284
                        VS +  +     + + + D TLK+W  S  KCL++   H +    + 
Sbjct: 181 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 240
Query: 285 AGFD----SLVFTGSADGTVKVWR-------RELQGKGTKHFLAQVLLKQENAITALAVN 333
           A F       + +GS D  V +W        ++LQG  T   ++      EN I + A+ 
Sbjct: 241 ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHPTENIIASAALE 299
Query: 334 QESAV 338
            +  +
Sbjct: 300 NDKTI 304

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
           H   +S ++ +++  LL S S DKTLK+W +S  KCL+++  H + +      F+   +L
Sbjct: 63  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 120
Query: 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
           + +GS D +V++W  +  GK  K      L    + ++A+  N++ +++   S DGL
Sbjct: 121 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGL 171

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 96/251 (38%), Gaps = 51/251 (20%)
Query: 126 IYSLAASGD--LLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQ 181
           I  +A S D  LL + SD K +++W   + K     K +S  V        SN I +G  
Sbjct: 64  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 123
Query: 182 DGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA---- 237
           D  +RIW V        K + +LP   D       P + V   R+ +++    YD     
Sbjct: 124 DESVRIWDVK-----TGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRI 171
Query: 238 -------------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDD 278
                              VS +  +     + + + D TLK+W  S  KCL++   H +
Sbjct: 172 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 231
Query: 279 AINSVVAGFD----SLVFTGSADGTVKVWR-------RELQGKGTKHFLAQVLLKQENAI 327
               + A F       + +GS D  V +W        ++LQG  T   ++      EN I
Sbjct: 232 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHPTENII 290
Query: 328 TALAVNQESAV 338
            + A+  +  +
Sbjct: 291 ASAALENDKTI 301

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
           H   +S ++ +++  LL S S DKTLK+W +S  KCL+++  H + +      F+   +L
Sbjct: 60  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 117
Query: 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
           + +GS D +V++W  +  GK  K      L    + ++A+  N++ +++   S DGL
Sbjct: 118 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGL 168

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 94/245 (38%), Gaps = 49/245 (20%)
Query: 130 AASGDLLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI 187
           ++  +LL + SD K +++W   + K     K +S  V        SN I +G  D  +RI
Sbjct: 77  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA---------- 237
           W V        K + +LP   D       P + V   R+ +++    YD           
Sbjct: 137 WDVK-----TGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 238 -------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284
                        VS +  +     + + + D TLK+W  S  KCL++   H +    + 
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 244
Query: 285 AGFD----SLVFTGSADGTVKVWR-------RELQGKGTKHFLAQVLLKQENAITALAVN 333
           A F       + +GS D  V +W        ++LQG  T   ++      EN I + A+ 
Sbjct: 245 ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHPTENIIASAALE 303
Query: 334 QESAV 338
            +  +
Sbjct: 304 NDKTI 308

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
           H   +S ++ +++  LL S S DKTLK+W +S  KCL+++  H + +      F+   +L
Sbjct: 67  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 124
Query: 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
           + +GS D +V++W  +  GK  K      L    + ++A+  N++ +++   S DGL
Sbjct: 125 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGL 175

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 94/245 (38%), Gaps = 49/245 (20%)
Query: 130 AASGDLLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI 187
           ++  +LL + SD K +++W   + K     K +S  V        SN I +G  D  +RI
Sbjct: 77  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA---------- 237
           W V        K + +LP   D       P + V   R+ +++    YD           
Sbjct: 137 WDVK-----TGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 238 -------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284
                        VS +  +     + + + D TLK+W  S  KCL++   H +    + 
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 244
Query: 285 AGFD----SLVFTGSADGTVKVWR-------RELQGKGTKHFLAQVLLKQENAITALAVN 333
           A F       + +GS D  V +W        ++LQG  T   ++      EN I + A+ 
Sbjct: 245 ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHPTENIIASAALE 303
Query: 334 QESAV 338
            +  +
Sbjct: 304 NDKTI 308

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
           H   +S ++ +++  LL S S DKTLK+W +S  KCL+++  H + +      F+   +L
Sbjct: 67  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 124
Query: 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
           + +GS D +V++W  +  GK  K      L    + ++A+  N++ +++   S DGL
Sbjct: 125 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGL 175

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 89/190 (46%), Gaps = 17/190 (8%)
Query: 123 EGHIYSLA-ASGDLLYTGSDSKNIRVWKNLKEFSG--FKSNSGLVKAIIITGDSN--KIF 177
           +G +++L  A G +L +GS  + +RVW   K      F+ ++  V+ + I    N   I 
Sbjct: 162 DGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIV 221
Query: 178 TGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA 237
           TG +D  + +WK+ +++        S+P   D+ +    P  +     N   + +     
Sbjct: 222 TGSRDNTLHVWKLPKES--------SVP---DHGEEHDYPLVFHTPEENPYFVGVLRGHM 270
Query: 238 VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSA 296
            S  +++    ++ SGS+D TL VW ++  KCL  ++ H D I S +   +     + S 
Sbjct: 271 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM 330
Query: 297 DGTVKVWRRE 306
           D T+++W  E
Sbjct: 331 DTTIRIWDLE 340

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 96/251 (38%), Gaps = 51/251 (20%)
Query: 126 IYSLAASGD--LLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQ 181
           I  +A S D  LL + SD K +++W   + K     K +S  V        SN I +G  
Sbjct: 71  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 182 DGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA---- 237
           D  +RIW V        K + +LP   D       P + V   R+ +++    YD     
Sbjct: 131 DESVRIWDVK-----TGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 238 -------------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDD 278
                              VS +  +     + + + D TLK+W  S  KCL++   H +
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238
Query: 279 AINSVVAGFD----SLVFTGSADGTVKVWR-------RELQGKGTKHFLAQVLLKQENAI 327
               + A F       + +GS D  V +W        ++LQG  T   ++      EN I
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHPTENII 297
Query: 328 TALAVNQESAV 338
            + A+  +  +
Sbjct: 298 ASAALENDKTI 308

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
           H   +S ++ +++  LL S S DKTLK+W +S  KCL+++  H + +      F+   +L
Sbjct: 67  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 124
Query: 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
           + +GS D +V++W  +  GK  K      L    + ++A+  N++ +++   S DGL
Sbjct: 125 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGL 175

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 89/209 (42%), Gaps = 46/209 (22%)
Query: 101 PYSPNENLLSSCNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVW-----KNLKEFS 155
           P  PN  L+ +  G   ++   +      + +G+ L + S  K I++W     K  K  S
Sbjct: 11  PVKPNYALMFTLAGHTKAVSSVK-----FSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 65
Query: 156 GFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSV 215
           G K     +  +  + DSN + +   D  ++IW VS            L T K       
Sbjct: 66  GHKLG---ISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--------CLKTLKG------ 108
Query: 216 NPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA 275
                             H + V C + N +  L+ SGS+D+++++W +    CL+++ A
Sbjct: 109 ------------------HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPA 150
Query: 276 HDDAINSVVAGFD-SLVFTGSADGTVKVW 303
           H D +++V    D SL+ + S DG  ++W
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 62/117 (52%), Gaps = 11/117 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
           H   +S ++ +++  LL S S DKTLK+W +S  KCL+++  H + +      F+   +L
Sbjct: 67  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 124
Query: 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
           + +GS D +V++W  +           + L    + ++A+  N++ +++   S DGL
Sbjct: 125 IVSGSFDESVRIWDVKTG------MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 175

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 89/209 (42%), Gaps = 46/209 (22%)
Query: 101 PYSPNENLLSSCNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVW-----KNLKEFS 155
           P  PN  L+ +  G   ++   +      + +G+ L + S  K I++W     K  K  S
Sbjct: 11  PVKPNYALMFTLAGHTKAVSSVK-----FSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 65
Query: 156 GFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSV 215
           G K     +  +  + DSN + +   D  ++IW VS            L T K       
Sbjct: 66  GHKLG---ISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--------CLKTLKG------ 108
Query: 216 NPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA 275
                             H + V C + N +  L+ SGS+D+++++W +    CL+++ A
Sbjct: 109 ------------------HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPA 150
Query: 276 HDDAINSVVAGFD-SLVFTGSADGTVKVW 303
           H D +++V    D SL+ + S DG  ++W
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 62/117 (52%), Gaps = 11/117 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
           H   +S ++ +++  LL S S DKTLK+W +S  KCL+++  H + +      F+   +L
Sbjct: 67  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 124
Query: 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
           + +GS D +V++W  +           + L    + ++A+  N++ +++   S DGL
Sbjct: 125 IVSGSFDESVRIWDVKTG------MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 175

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 89/190 (46%), Gaps = 17/190 (8%)
Query: 123 EGHIYSLA-ASGDLLYTGSDSKNIRVWKNLKEFSG--FKSNSGLVKAIIITGDSN--KIF 177
           +G +++L  A G +L +GS  + +RVW   K      F+ ++  V+ + I    N   I 
Sbjct: 162 DGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIV 221
Query: 178 TGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA 237
           TG +D  + +WK+ +++        S+P   D+ +    P  +     N   + +     
Sbjct: 222 TGSRDNTLHVWKLPKES--------SVP---DHGEEHDYPLVFHTPEENPYFVGVLRGHX 270
Query: 238 VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSA 296
            S  +++    ++ SGS+D TL VW ++  KCL  ++ H D I S +   +     + S 
Sbjct: 271 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASX 330
Query: 297 DGTVKVWRRE 306
           D T+++W  E
Sbjct: 331 DTTIRIWDLE 340

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 100/238 (42%), Gaps = 55/238 (23%)
Query: 128 SLAASGDLLYTGSDSKNIRVWK-----NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQD 182
           S+  +GD + + S  K I++W+      +K F+G +     V+ +    D   I +   D
Sbjct: 199 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE---WVRMVRPNQDGTLIASCSND 255
Query: 183 GKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLS 242
             +R+W V+ K                            E+R +R+V++   +   S  S
Sbjct: 256 QTVRVWVVATKECKA------------------------ELREHRHVVECISWAPESSYS 291
Query: 243 LNAEQG------------LLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS- 289
             +E               L SGS DKT+K+W +S   CL ++  HD+ +  V+  F S 
Sbjct: 292 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL--FHSG 349
Query: 290 --LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345
              + + + D T++VW  + + K       + L   E+ +T+L  ++ +  V  GS D
Sbjct: 350 GKFILSCADDKTLRVW--DYKNKR----CMKTLNAHEHFVTSLDFHKTAPYVVTGSVD 401

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 12/116 (10%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV--VAGFDSLV 291
           H D+V  +S +    LL S S D T+K+W     +C+ +++ HD  ++SV  +   D +V
Sbjct: 149 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV 208
Query: 292 FTGSADGTVKVWRRELQG-------KGTKHFLAQVLLKQENAITALAVNQESAVVY 340
            + S D T+K+W  E+Q         G + ++  V   Q+  + A   N ++  V+
Sbjct: 209 -SASRDKTIKMW--EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 86/192 (44%), Gaps = 20/192 (10%)
Query: 126 IYSLAASGDLLYTGSDSKNIRVW-KNLKEFSGFKS-NSGLVKAIIITGDSNKIFTGHQDG 183
           +Y L      + +G     I++W KN  E     + ++G V  + +  D   I TG  D 
Sbjct: 136 VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERVIITGSSDS 193
Query: 184 KIRIWKV---SRKNPSVHKRVGSLPT-FKDYVKSSVNPKNYVEVRRN--------RNVLK 231
            +R+W V      N  +H     L   F + +  + +    + V           R VL 
Sbjct: 194 TVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVL- 252
Query: 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLV 291
           + H  AV+ +  + +   + S S D+T+KVW  S C+ + ++N H   I + +   D LV
Sbjct: 253 VGHRAAVNVVDFDDK--YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI-ACLQYRDRLV 309
Query: 292 FTGSADGTVKVW 303
            +GS+D T+++W
Sbjct: 310 VSGSSDNTIRLW 321

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 96/225 (42%), Gaps = 22/225 (9%)
Query: 133 GDLLYTGSDSKNIRVW-KNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVS 191
           G  + + SD K +++W +N +       +S  V+ +  + D   I +   D  +++W   
Sbjct: 356 GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-- 413
Query: 192 RKNPSVHKRVGSLPTF-------KDYVKSSVNPKNYVEV-RRNRNVLKIR--HYDAVSCL 241
           R    +    G   +         D   +S +    V++  RN  +L+    H  +V  +
Sbjct: 414 RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGV 473
Query: 242 SLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTV 300
           + + +   + S S DKT+K+W   + + L+++  H  ++  V    D   + + S D TV
Sbjct: 474 AFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 532
Query: 301 KVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345
           K+W R  Q       L Q L    +++  +A + +   +   SSD
Sbjct: 533 KLWNRNGQ-------LLQTLTGHSSSVWGVAFSPDGQTIASASSD 570

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 83/193 (43%), Gaps = 41/193 (21%)
Query: 121 RKEGHI-----YSLAASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIITGDS 173
           R EGH       +L+ +G+   + S   ++R+W  +N +    F  ++  V ++  + D+
Sbjct: 62  RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN 121
Query: 174 NKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIR 233
            +I +G +D  +R+W V  K   +H                              + +  
Sbjct: 122 RQIVSGGRDNALRVWNV--KGECMH-----------------------------TLSRGA 150
Query: 234 HYDAVSCL--SLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SL 290
           H D VSC+  S + +  ++ SG WD  +KVW ++  + +  +  H + + SV    D SL
Sbjct: 151 HTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSL 210
Query: 291 VFTGSADGTVKVW 303
             +   DG  ++W
Sbjct: 211 CASSDKDGVARLW 223

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/251 (20%), Positives = 108/251 (43%), Gaps = 44/251 (17%)
Query: 118 SIVRKEGHIYSLAASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIITGDSNK 175
           ++V   G ++S     +++ +GS  + ++VW  +  +       ++  V+ + +     +
Sbjct: 154 TLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL--HEKR 211
Query: 176 IFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFK--DYVKSSVNPKNYVEVRRNRNVLKIR 233
           + +G +D  +R+W +      +H  +G +   +   Y    V    Y        ++K+ 
Sbjct: 212 VVSGSRDATLRVWDIE-TGQCLHVLMGHVAAVRCVQYDGRRVVSGAY------DFMVKVW 264
Query: 234 HYDAVSCL-----------SLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINS 282
             +  +CL           SL  +   + SGS D +++VW +    C+ ++  H  ++ S
Sbjct: 265 DPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH-QSLTS 323
Query: 283 VVAGFDSLVFTGSADGTVKVW-------RRELQGKGTKHFLAQVLLKQENAITALAVNQE 335
            +   D+++ +G+AD TVK+W        + LQG            K ++A+T L  N+ 
Sbjct: 324 GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPN----------KHQSAVTCLQFNKN 373
Query: 336 SAVVYCGSSDG 346
              V   S DG
Sbjct: 374 --FVITSSDDG 382

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 229 VLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD 288
           VLK      ++CL     +  + SGS D TLKVW     KCL ++  H   + S     D
Sbjct: 113 VLKGHDDHVITCLQFCGNR--IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR-D 169
Query: 289 SLVFTGSADGTVKVWRRE 306
           +++ +GS D T+KVW  E
Sbjct: 170 NIIISGSTDRTLKVWNAE 187

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 12/108 (11%)
Query: 242 SLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAI--NSVVAGFDSLVFTGSADGT 299
           SL+ + G++ SGSWDKT KVW+  +   + ++ AH+ ++    VV+  ++   T SAD T
Sbjct: 109 SLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKT 166
Query: 300 VKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347
           +K+W+ +   K  K F         + +  LAV  +   + C S+DGL
Sbjct: 167 IKLWQND---KVIKTFSG----IHNDVVRHLAVVDDGHFISC-SNDGL 206

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 86/206 (41%), Gaps = 50/206 (24%)
Query: 115 LIGSIVRKEGHIYSLAASG---DLLYTGSDSKNIRVWK---NLKEFS----GFKSNSGLV 164
           L G++    G + SLA S    +LL + S  K +  WK   + ++F      FK +S +V
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 165 KAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVR 224
           +   +T D     +   D  +R+W V+              T++ +V             
Sbjct: 69  QDCTLTADGAYALSASWDKTLRLWDVATGE-----------TYQRFVG------------ 105
Query: 225 RNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV- 283
                    H   V  + ++ +  ++ SGS DKT+KVW I   +CL ++  H+D ++ V 
Sbjct: 106 ---------HKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVR 155
Query: 284 -----VAGFDSL-VFTGSADGTVKVW 303
                 A  DS+ + +   D  VK W
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAW 181

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 86/206 (41%), Gaps = 50/206 (24%)
Query: 115 LIGSIVRKEGHIYSLAASG---DLLYTGSDSKNIRVWK---NLKEFS----GFKSNSGLV 164
           L G++    G + SLA S    +LL + S  K +  WK   + ++F      FK +S +V
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 165 KAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVR 224
           +   +T D     +   D  +R+W V+              T++ +V             
Sbjct: 69  QDCTLTADGAYALSASWDKTLRLWDVATGE-----------TYQRFVG------------ 105
Query: 225 RNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV- 283
                    H   V  + ++ +  ++ SGS DKT+KVW I   +CL ++  H+D ++ V 
Sbjct: 106 ---------HKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVR 155
Query: 284 -----VAGFDSL-VFTGSADGTVKVW 303
                 A  DS+ + +   D  VK W
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAW 181

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 86/206 (41%), Gaps = 50/206 (24%)
Query: 115 LIGSIVRKEGHIYSLAASG---DLLYTGSDSKNIRVWK---NLKEFS----GFKSNSGLV 164
           L G++    G + SLA S    +LL + S  K +  WK   + ++F      FK +S +V
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 165 KAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVR 224
           +   +T D     +   D  +R+W V+              T++ +V             
Sbjct: 69  QDCTLTADGAYALSASWDKTLRLWDVATGE-----------TYQRFVG------------ 105
Query: 225 RNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV- 283
                    H   V  + ++ +  ++ SGS DKT+KVW I   +CL ++  H+D ++ V 
Sbjct: 106 ---------HKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVR 155
Query: 284 -----VAGFDSL-VFTGSADGTVKVW 303
                 A  DS+ + +   D  VK W
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAW 181

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 86/206 (41%), Gaps = 50/206 (24%)
Query: 115 LIGSIVRKEGHIYSLAASG---DLLYTGSDSKNIRVWK---NLKEFS----GFKSNSGLV 164
           L G++    G + SLA S    +LL + S  K +  WK   + ++F      FK +S +V
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 165 KAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVR 224
           +   +T D     +   D  +R+W V+              T++ +V             
Sbjct: 69  QDCTLTADGAYALSASWDKTLRLWDVATGE-----------TYQRFVG------------ 105
Query: 225 RNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV- 283
                    H   V  + ++ +  ++ SGS DKT+KVW I   +CL ++  H+D ++ V 
Sbjct: 106 ---------HKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVR 155
Query: 284 -----VAGFDSL-VFTGSADGTVKVW 303
                 A  DS+ + +   D  VK W
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAW 181

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 86/206 (41%), Gaps = 50/206 (24%)
Query: 115 LIGSIVRKEGHIYSLAASG---DLLYTGSDSKNIRVWK---NLKEFS----GFKSNSGLV 164
           L G++    G + SLA S    +LL + S  K +  WK   + ++F      FK +S +V
Sbjct: 3   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 62
Query: 165 KAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVR 224
           +   +T D     +   D  +R+W V+              T++ +V             
Sbjct: 63  QDCTLTADGAYALSASWDKTLRLWDVATGE-----------TYQRFVG------------ 99
Query: 225 RNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV- 283
                    H   V  + ++ +  ++ SGS DKT+KVW I   +CL ++  H+D ++ V 
Sbjct: 100 ---------HKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVR 149
Query: 284 -----VAGFDSL-VFTGSADGTVKVW 303
                 A  DS+ + +   D  VK W
Sbjct: 150 VVPNEKADDDSVTIISAGNDKMVKAW 175

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 63/161 (39%), Gaps = 32/161 (19%)
Query: 133 GDLLYTGSDSKNIRVWK---NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW- 188
            ++  +GS    +R+W      +    +  + G + ++    D  +  TG  DG  R++ 
Sbjct: 218 ANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFD 277
Query: 189 -------KVSRKNP-----------SVHKRVGSLPTFKDYVKSSVNPKNYV------EVR 224
                  +V  + P           SV   +     F  Y     N   YV      E+ 
Sbjct: 278 MRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS----NGDCYVWDTLLAEMV 333
Query: 225 RNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS 265
            N   L+  H   +SCL L+++   L +GSWDK LK+W  S
Sbjct: 334 LNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374

>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 231 KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVA--GFD 288
           K  H D V  LS+ ++     SG  D ++KVW +S    L+S NAH   +N V A  G D
Sbjct: 135 KYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD 194
Query: 289 SLVFTGSADGTVKVW 303
           ++  +   DG + +W
Sbjct: 195 TIFLSCGEDGRILLW 209

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 85/206 (41%), Gaps = 50/206 (24%)
Query: 115 LIGSIVRKEGHIYSLAASG---DLLYTGSDSKNIRVWK---NLKEFS----GFKSNSGLV 164
           L G++    G + SLA S    +LL + S  K +  WK   + ++F      FK +S +V
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 165 KAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVR 224
           +   +T D     +   D  +R+W V+              T++ +V             
Sbjct: 69  QDCTLTADGAYALSASWDKTLRLWDVATGE-----------TYQRFVG------------ 105
Query: 225 RNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV- 283
                    H   V  + ++ +   + SGS DKT+KVW I   +CL ++  H+D ++ V 
Sbjct: 106 ---------HKSDVXSVDIDKKASXIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVR 155
Query: 284 -----VAGFDSL-VFTGSADGTVKVW 303
                 A  DS+ + +   D  VK W
Sbjct: 156 VVPNEKADDDSVTIISAGNDKXVKAW 181

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 100/249 (40%), Gaps = 60/249 (24%)
Query: 88  PVSPYTKSPWLMPPYSPNENLLSSCNG-------------LIGSIVRKEGHIYSL----- 129
           P  P ++  W +  ++P   LL+SC G              I   V  EGH  ++     
Sbjct: 12  PAHPDSRC-WFLA-WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAW 69
Query: 130 AASGDLLYTGSDSKNIRVWK-NLKEFSGFKSNSG---LVKAIIITGDSNKIFTGHQDGKI 185
           +  G+ L + S      +WK N  +F    +  G    VK++      N + T  +D  +
Sbjct: 70  SPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSV 129
Query: 186 RIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA 245
            +W+V  ++              +Y   SV          N +   ++H      +  + 
Sbjct: 130 WVWEVDEED--------------EYECVSV---------LNSHTQDVKH------VVWHP 160
Query: 246 EQGLLYSGSWDKTLKVWRIS--DCKCLESINAHDDAINSVVAGFD---SLVFTGSADGTV 300
            Q LL S S+D T+K++R    D  C  ++  H+  + S+   FD     + + S D TV
Sbjct: 161 SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSL--AFDPSGQRLASCSDDRTV 218
Query: 301 KVWRRELQG 309
           ++WR+ L G
Sbjct: 219 RIWRQYLPG 227

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	347
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.98
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.98
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.98
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.98
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.98
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.97
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.97
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.97
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.97
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.97
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.97
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.97
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.96
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.96
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.96
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.96
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.96
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.96
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.96
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.96
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.96
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.96
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.96
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.96
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.96
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.96
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.96
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.96
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.96
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.95
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.95
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.95
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.95
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.95
3jro_A	753	Fusion protein of protein transport protein SEC13	99.95
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.95
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.95
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.95
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.95
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.95
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.95
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.95
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.95
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.95
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.95
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.95
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.95
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.94
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.94
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.94
2pm7_B	297	Protein transport protein SEC13, protein transport	99.94
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.94
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.94
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.94
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.94
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.94
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.94
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.94
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.94
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.94
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.94
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.94
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.94
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.94
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.94
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.94
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.94
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.94
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.93
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.93
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.93
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.93
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.93
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.93
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.93
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.93
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.93
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.93
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.93
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.93
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.92
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.92
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.91
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.91
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.91
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.91
3jro_A	753	Fusion protein of protein transport protein SEC13	99.9
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.89
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.89
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.89
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.89
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.88
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.87
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.87
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.86
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.84
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.84
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.83
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.83
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.83
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.82
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.78
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.77
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.74
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.74
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.7
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.69
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.69
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.69
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.68
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.68
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.68
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.67
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.67
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.67
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.66
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.66
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.64
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.63
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.63
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.63
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.62
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.62
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.61
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.61
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.6
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.59
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.57
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.54
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.52
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.51
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.51
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.51
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.5
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.49
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.48
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.47
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.47
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.46
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.42
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.41
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.38
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.38
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.37
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.37
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.26
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.25
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.24
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.23
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.22
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.22
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.2
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.19
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.19
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.17
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.17
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.17
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.14
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.14
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.13
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.13
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.13
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.13
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.13
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.12
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.1
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.09
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.06
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.04
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.03
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.03
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.0
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.93
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.9
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.9
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.85
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.83
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.82
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.76
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.72
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.69
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.66
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.64
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.59
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.56
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.54
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.54
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.52
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.51
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.5
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.48
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.45
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.45
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.44
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.38
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.38
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.36
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.35
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.35
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.34
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.25
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.25
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.23
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.23
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.18
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.15
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.13
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.12
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.07
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.06
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.02
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.02
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.0
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.99
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.91
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.83
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.78
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.77
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.75
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.74
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.7
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.61
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.61
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.6
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.52
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.52
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.5
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.47
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.45
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.41
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.39
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.39
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.38
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.38
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.37
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.33
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.31
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.28
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.27
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.27
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.22
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.22
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.19
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.18
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.18
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.14
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.1
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.07
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.07
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.02
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.02
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.01
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.98
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.97
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.95
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.82
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.81
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.79
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.62
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.62
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.6
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.6
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.57
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.55
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.39
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	95.97
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.87
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.86
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	95.83
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.83
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.77
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.74
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.59
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.58
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.51
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.47
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	95.36
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.32
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	95.29
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.29
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.73
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	94.6
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	94.46
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.43
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	94.41
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	94.23
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	93.89
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	93.28
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	92.97
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	92.95
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	92.6
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	92.01
3ott_A	758	Two-component system sensor histidine kinase; beta	91.86
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	90.18
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	89.94
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	89.63
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	89.45
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	88.59
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	88.58
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	87.93
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	87.76
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	87.3
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	86.12
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	85.83
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	85.49
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	84.66
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	84.57
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	83.16
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	82.28
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	81.86
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	81.25

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.3e-32  Score=246.27  Aligned_cols=192  Identities=14%  Similarity=0.201  Sum_probs=161.8

Q ss_pred             eeeccccEEEEee--cCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCC-CEEEEEeCCCcEEEEecCCC
Q 043707          119 IVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDS-NKIFTGHQDGKIRIWKVSRK  193 (347)
Q Consensus       119 l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~-~~l~s~~~Dg~I~vwd~~~~  193 (347)
                      +.+|++.|+++++  ++++|++|+.||+|++||..  +.+..+.+|.+.|.+++|+|++ .+|++|+.||+|++||++++
T Consensus       123 ~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~  202 (344)
T 4gqb_B          123 KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP  202 (344)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSS
T ss_pred             ccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeecccccccccccccc
Confidence            4479999999987  57899999999999999965  4577889999999999999987 47899999999999999987


Q ss_pred             CCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCEEEEE
Q 043707          194 NPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCKCLES  272 (347)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwdl~~~~~~~~  272 (347)
                      +........                              .|...+.+++|+|+ +.+|++|+.||+|+|||+++++++..
T Consensus       203 ~~~~~~~~~------------------------------~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~  252 (344)
T 4gqb_B          203 KPASQIGCS------------------------------APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS  252 (344)
T ss_dssp             SCEEECC----------------------------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEE
T ss_pred             ceeeeeecc------------------------------eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEE
Confidence            643322211                              26667999999995 67899999999999999999999999


Q ss_pred             EecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCC-EEEEecCCCC
Q 043707          273 INAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESA-VVYCGSSDGL  347 (347)
Q Consensus       273 ~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~l~sgs~DG~  347 (347)
                      +.+|...|++++|+|++  +|++|+.|++|+|||++...       +..+.+|...|++|+|+|+++ +|++||.||+
T Consensus       253 ~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~-------~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~  323 (344)
T 4gqb_B          253 SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE-------LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQ  323 (344)
T ss_dssp             EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE-------EEEECCCSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred             EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc-------EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCe
Confidence            99999999999999986  78999999999999997432       234678999999999999985 6779999985

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.7e-32  Score=241.94  Aligned_cols=227  Identities=20%  Similarity=0.237  Sum_probs=180.5

Q ss_pred             eeEeeeeccccEEEEeec------CCEEEEecCCCcEEEEeCCCc----ceeeecCCCCeeEEEEeCCCCEEEEEeCCCc
Q 043707          115 LIGSIVRKEGHIYSLAAS------GDLLYTGSDSKNIRVWKNLKE----FSGFKSNSGLVKAIIITGDSNKIFTGHQDGK  184 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~~------~~~l~tg~~dg~I~vwd~~~~----~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~  184 (347)
                      +++.+.+|++.|++++|+      +++|++|+.|++|+||+....    ...+.+|...|.+++|++++.++++++.|++
T Consensus        24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~  103 (321)
T 3ow8_A           24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH  103 (321)
T ss_dssp             EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred             eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence            456778999999999984      458999999999999995432    3457899999999999999999999999999


Q ss_pred             EEEEecCCCCCceeeeec--------ccccccceEEeccCCCeE-EEEeecce-eeeeecCCCeeEEEEcCCCCEEEEEe
Q 043707          185 IRIWKVSRKNPSVHKRVG--------SLPTFKDYVKSSVNPKNY-VEVRRNRN-VLKIRHYDAVSCLSLNAEQGLLYSGS  254 (347)
Q Consensus       185 I~vwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s  254 (347)
                      |++||+.+++........        ..|....++....+.... +.+..... .....|...|.+++|+|++++|++|+
T Consensus       104 i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~  183 (321)
T 3ow8_A          104 IRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGA  183 (321)
T ss_dssp             EEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEc
Confidence            999999887643322211        112222222222222211 11112222 23345788899999999999999999


Q ss_pred             CCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEc
Q 043707          255 WDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVN  333 (347)
Q Consensus       255 ~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~  333 (347)
                      .||.|++||+++++++..+.+|...|.+++|+|++ +|++|+.|+.|++||++...      +...+.+|...|++++|+
T Consensus       184 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~------~~~~~~~h~~~v~~~~~s  257 (321)
T 3ow8_A          184 IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN------LAGTLSGHASWVLNVAFC  257 (321)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC------EEEEECCCSSCEEEEEEC
T ss_pred             CCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc------eeEEEcCCCCceEEEEEC
Confidence            99999999999999999999999999999999998 89999999999999997543      456778899999999999


Q ss_pred             cCCCEEEEecCCCC
Q 043707          334 QESAVVYCGSSDGL  347 (347)
Q Consensus       334 p~~~~l~sgs~DG~  347 (347)
                      |++++|++|+.||+
T Consensus       258 p~~~~l~s~s~D~~  271 (321)
T 3ow8_A          258 PDDTHFVSSSSDKS  271 (321)
T ss_dssp             TTSSEEEEEETTSC
T ss_pred             CCCCEEEEEeCCCc
Confidence            99999999999985

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=6.3e-32  Score=249.22  Aligned_cols=241  Identities=21%  Similarity=0.321  Sum_probs=191.4

Q ss_pred             CCCCCCcccccc-------------cceeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCC--CcceeeecCCCC
Q 043707          101 PYSPNENLLSSC-------------NGLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGL  163 (347)
Q Consensus       101 ~~~p~~~~~~~~-------------~~~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~  163 (347)
                      .|+|++..+++.             ..++.++.+|.+.|.+++++  +++|++|+.||+|+|||..  +.+..+.+|...
T Consensus       115 ~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~  194 (410)
T 1vyh_C          115 IFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN  194 (410)
T ss_dssp             EECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSC
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCC
Confidence            577777665442             23677889999999999874  7799999999999999965  456778899999


Q ss_pred             eeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeee--------cccccccceEEeccCCCeEE-EEeecc-eeeeee
Q 043707          164 VKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRV--------GSLPTFKDYVKSSVNPKNYV-EVRRNR-NVLKIR  233 (347)
Q Consensus       164 V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~  233 (347)
                      |.+++|+|++++|++|+.|++|++||++++........        ...+....++....+....+ ++.... .....+
T Consensus       195 V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~  274 (410)
T 1vyh_C          195 VSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE  274 (410)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             EEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecC
Confidence            99999999999999999999999999998764332211        11122222333333332222 222222 223457


Q ss_pred             cCCCeeEEEEcCC--------------------CCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEE
Q 043707          234 HYDAVSCLSLNAE--------------------QGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF  292 (347)
Q Consensus       234 h~~~V~~l~~~~~--------------------~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~  292 (347)
                      |...|.+++|+|+                    +.+|++|+.|++|++||+++++++..+.+|...|.+++|+|++ +|+
T Consensus       275 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~  354 (410)
T 1vyh_C          275 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL  354 (410)
T ss_dssp             CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEE
T ss_pred             CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEE
Confidence            9999999999996                    6789999999999999999999999999999999999999997 899


Q ss_pred             EEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          293 TGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       293 s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      +|+.||.|++||+....      +...+.+|...|++++|+|++.+|++|+.||+
T Consensus       355 s~s~D~~i~vwd~~~~~------~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~  403 (410)
T 1vyh_C          355 SCADDKTLRVWDYKNKR------CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT  403 (410)
T ss_dssp             EEETTTEEEEECCTTSC------CCEEEECCSSCEEEEEECSSSSCEEEEETTSE
T ss_pred             EEeCCCeEEEEECCCCc------eEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCc
Confidence            99999999999997443      46677889999999999999999999999984

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.4e-32  Score=246.18  Aligned_cols=190  Identities=17%  Similarity=0.233  Sum_probs=158.4

Q ss_pred             eeccccEEEEeecC-CEEEEecCCCcEEEEeCCC--cce----eeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCC
Q 043707          120 VRKEGHIYSLAASG-DLLYTGSDSKNIRVWKNLK--EFS----GFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSR  192 (347)
Q Consensus       120 ~~h~~~V~~l~~~~-~~l~tg~~dg~I~vwd~~~--~~~----~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~  192 (347)
                      ..|+..|.+++|.+ +.|++|+.||+|+|||..+  ...    ...+|.+.|.+++|+|++++|++|+.||+|++||+++
T Consensus        79 ~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~  158 (344)
T 4gqb_B           79 VQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ  158 (344)
T ss_dssp             EEESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             eccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            34567799999864 5899999999999999543  222    3458999999999999999999999999999999988


Q ss_pred             CCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCEEEE
Q 043707          193 KNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ-GLLYSGSWDKTLKVWRISDCKCLE  271 (347)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~dg~i~vwdl~~~~~~~  271 (347)
                      ++....                                +.+|...|.+++|++++ .+|++++.|++|++||+++++++.
T Consensus       159 ~~~~~~--------------------------------~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~  206 (344)
T 4gqb_B          159 QVVLSS--------------------------------YRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPAS  206 (344)
T ss_dssp             TEEEEE--------------------------------ECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEE
T ss_pred             CcEEEE--------------------------------EcCcCCceEEEEecCCCCCceeeeccccccccccccccceee
Confidence            753221                                12599999999999987 588999999999999999999888


Q ss_pred             EEe--cCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCC-CEEEEecCCC
Q 043707          272 SIN--AHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQES-AVVYCGSSDG  346 (347)
Q Consensus       272 ~~~--~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~-~~l~sgs~DG  346 (347)
                      .+.  .|...+.+++|+|++  +|++|+.||.|++||++...      ++..+.+|...|++|+|+|++ ++|++|+.||
T Consensus       207 ~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~------~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~  280 (344)
T 4gqb_B          207 QIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS------CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDC  280 (344)
T ss_dssp             ECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--------CCEEEECCSSCEEEEEECSSSSCCEEEEETTS
T ss_pred             eeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc------EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCC
Confidence            774  456679999999864  88999999999999998543      567788999999999999998 6899999998


Q ss_pred             C
Q 043707          347 L  347 (347)
Q Consensus       347 ~  347 (347)
                      +
T Consensus       281 ~  281 (344)
T 4gqb_B          281 S  281 (344)
T ss_dssp             C
T ss_pred             e
Confidence            5

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4.1e-31  Score=233.16  Aligned_cols=231  Identities=18%  Similarity=0.159  Sum_probs=172.9

Q ss_pred             eEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC----CcceeeecCCCCeeEEEEeC--CCCEEEEEeCCCcEEE
Q 043707          116 IGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL----KEFSGFKSNSGLVKAIIITG--DSNKIFTGHQDGKIRI  187 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~----~~~~~~~~h~~~V~~l~~sp--~~~~l~s~~~Dg~I~v  187 (347)
                      +..+.+|.+.|.++++  +|++|++|+.|++|+|||..    +.+..+.+|.+.|.+++|++  ++++|++|+.||+|++
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i   81 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI   81 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred             ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence            4567789999999886  58899999999999999964    34678899999999999986  3889999999999999


Q ss_pred             EecCCCCCceeee----------eccccc--ccceEEeccCCCe-EEEEeecc---eeeeeecCCCeeEEEEcCC-----
Q 043707          188 WKVSRKNPSVHKR----------VGSLPT--FKDYVKSSVNPKN-YVEVRRNR---NVLKIRHYDAVSCLSLNAE-----  246 (347)
Q Consensus       188 wd~~~~~~~~~~~----------~~~~~~--~~~~~~~~~~~~~-~~~~~~~~---~~~~~~h~~~V~~l~~~~~-----  246 (347)
                      ||+++++......          +...|.  ...++....+... ++++....   .....+|...|.+++|+|+     
T Consensus        82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~  161 (297)
T 2pm7_B           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  161 (297)
T ss_dssp             EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred             EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence            9998764211111          111121  1122223333222 22222221   2345579999999999996     


Q ss_pred             --------CCEEEEEeCCCcEEEEeCCCCE----EEEEEecCCCcEEEEEeCCCC----EEEEEeCCCcEEEEEcccCCc
Q 043707          247 --------QGLLYSGSWDKTLKVWRISDCK----CLESINAHDDAINSVVAGFDS----LVFTGSADGTVKVWRRELQGK  310 (347)
Q Consensus       247 --------~~~l~s~s~dg~i~vwdl~~~~----~~~~~~~h~~~v~~i~~~~~~----~l~s~~~dg~I~vwd~~~~~~  310 (347)
                              +.+|++|+.|++|++||+++++    .+..+.+|...|.+++|+|++    +|++++.|++|+|||++....
T Consensus       162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~  241 (297)
T 2pm7_B          162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG  241 (297)
T ss_dssp             --------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred             ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCC
Confidence                    4799999999999999998765    677889999999999999973    899999999999999975321


Q ss_pred             cceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          311 GTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       311 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      ...... .....|...|.+++|+|++++|++++.||+
T Consensus       242 ~~~~~~-~~~~~~~~~v~~~~~s~~g~~las~~~D~~  277 (297)
T 2pm7_B          242 PWKKTL-LKEEKFPDVLWRASWSLSGNVLALSGGDNK  277 (297)
T ss_dssp             CCEEEE-SSSSCCSSCEEEEEECSSSCCEEEEETTSC
T ss_pred             ccceee-eecccCCCcEEEEEECCCCCEEEEEcCCCc
Confidence            111111 112467889999999999999999999985

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=8.3e-32  Score=242.69  Aligned_cols=200  Identities=22%  Similarity=0.315  Sum_probs=169.4

Q ss_pred             ceeEeeeeccc-cEEEEee--cCCEEEEecCCCcEEEEeCCCc-----ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcE
Q 043707          114 GLIGSIVRKEG-HIYSLAA--SGDLLYTGSDSKNIRVWKNLKE-----FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKI  185 (347)
Q Consensus       114 ~~i~~l~~h~~-~V~~l~~--~~~~l~tg~~dg~I~vwd~~~~-----~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I  185 (347)
                      .++.++.+|.+ .|+++++  +|++|++|+.|++|+|||....     .....+|...|.+++|+|++++|++|+.|++|
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v   85 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT   85 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence            46788999988 8888876  5789999999999999996532     12236899999999999999999999999999


Q ss_pred             EEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 043707          186 RIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS  265 (347)
Q Consensus       186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~  265 (347)
                      ++||+..+......                              .+.+|...|.+++|+|++++|++|+.|++|++||++
T Consensus        86 ~iw~~~~~~~~~~~------------------------------~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~  135 (345)
T 3fm0_A           86 CIWKKNQDDFECVT------------------------------TLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD  135 (345)
T ss_dssp             EEEEECCC-EEEEE------------------------------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred             EEEEccCCCeEEEE------------------------------EccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECC
Confidence            99998765421111                              122599999999999999999999999999999998


Q ss_pred             CC---EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEE
Q 043707          266 DC---KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYC  341 (347)
Q Consensus       266 ~~---~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s  341 (347)
                      ++   +++..+..|...|.+++|+|++ +|++++.|+.|++||.+...    ......+.+|...|++|+|+|++++|++
T Consensus       136 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~----~~~~~~~~~h~~~v~~l~~sp~g~~l~s  211 (345)
T 3fm0_A          136 EEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDD----WVCCATLEGHESTVWSLAFDPSGQRLAS  211 (345)
T ss_dssp             TTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTE----EEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             CCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCC----EEEEEEecCCCCceEEEEECCCCCEEEE
Confidence            65   4677888999999999999997 99999999999999987432    2345677889999999999999999999


Q ss_pred             ecCCCC
Q 043707          342 GSSDGL  347 (347)
Q Consensus       342 gs~DG~  347 (347)
                      |+.||+
T Consensus       212 ~s~D~~  217 (345)
T 3fm0_A          212 CSDDRT  217 (345)
T ss_dssp             EETTSC
T ss_pred             EeCCCe
Confidence            999985

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6.4e-31  Score=232.70  Aligned_cols=227  Identities=17%  Similarity=0.293  Sum_probs=177.8

Q ss_pred             eeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEec
Q 043707          115 LIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKV  190 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~  190 (347)
                      .+..+..|...|.++.+  ++++|++|+.|++|++||..  +.+..+.+|.+.|.+++|+|++++|++|+.||+|++||+
T Consensus        47 ~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~  126 (304)
T 2ynn_A           47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW  126 (304)
T ss_dssp             EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEG
T ss_pred             eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEEC
Confidence            57788889999988875  68899999999999999965  557788999999999999999999999999999999999


Q ss_pred             CCCCCceeee---------ecccccccc-eEEeccCCCeEE-EEeecc--eeeeeecCCCeeEEEEcC--CCCEEEEEeC
Q 043707          191 SRKNPSVHKR---------VGSLPTFKD-YVKSSVNPKNYV-EVRRNR--NVLKIRHYDAVSCLSLNA--EQGLLYSGSW  255 (347)
Q Consensus       191 ~~~~~~~~~~---------~~~~~~~~~-~~~~~~~~~~~~-~~~~~~--~~~~~~h~~~V~~l~~~~--~~~~l~s~s~  255 (347)
                      +++.......         +...|.... ++..+.+....+ ++....  .....+|...|.++.|+|  ++.+|++|+.
T Consensus       127 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~  206 (304)
T 2ynn_A          127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD  206 (304)
T ss_dssp             GGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET
T ss_pred             CCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC
Confidence            8764322111         111221122 222222222111 111111  122335678899999987  6789999999


Q ss_pred             CCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEcc
Q 043707          256 DKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQ  334 (347)
Q Consensus       256 dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p  334 (347)
                      |++|++||+++++++..+.+|...|.+++|+|++ +|++|+.||+|++||+++..      +.+.+..|...+.+++|+|
T Consensus       207 D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~------~~~~~~~~~~~~~~~~~~~  280 (304)
T 2ynn_A          207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK------VEKTLNVGLERSWCIATHP  280 (304)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC------EEEEECCSSSSEEEEEECT
T ss_pred             CCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCc------eeeeccCCCccEEEEEECC
Confidence            9999999999999999999999999999999997 99999999999999997543      5667778889999999999


Q ss_pred             CCC--EEEEecCCCC
Q 043707          335 ESA--VVYCGSSDGL  347 (347)
Q Consensus       335 ~~~--~l~sgs~DG~  347 (347)
                      ++.  +|++|+.||+
T Consensus       281 ~~~~~~~asg~~~g~  295 (304)
T 2ynn_A          281 TGRKNYIASGFDNGF  295 (304)
T ss_dssp             TCGGGCEEEEETTEE
T ss_pred             CCCceEEEEecCCce
Confidence            874  6899988873

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.4e-31  Score=235.64  Aligned_cols=226  Identities=16%  Similarity=0.212  Sum_probs=183.5

Q ss_pred             eEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecC
Q 043707          116 IGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVS  191 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~  191 (347)
                      ...+.+|...|.+++++  +.++++|+.|++|++||..  +.+..+..|...+.+++|+|++++|++|+.||.|++||++
T Consensus        73 ~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~  152 (321)
T 3ow8_A           73 QWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVE  152 (321)
T ss_dssp             EEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETT
T ss_pred             eeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcC
Confidence            45688999999999875  6799999999999999965  4466778888999999999999999999999999999998


Q ss_pred             CCCCceeee--------ecccccccceEEeccCCCeEE-EEeeccee-eeeecCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 043707          192 RKNPSVHKR--------VGSLPTFKDYVKSSVNPKNYV-EVRRNRNV-LKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKV  261 (347)
Q Consensus       192 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~v  261 (347)
                      +++......        +...|....++....+....+ ++...... .+.+|...|.+++|+|++.+|++|+.|++|++
T Consensus       153 ~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~i  232 (321)
T 3ow8_A          153 SGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKI  232 (321)
T ss_dssp             TCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred             CCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEE
Confidence            876433221        112233333333333333222 22222222 23468999999999999999999999999999


Q ss_pred             EeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEE
Q 043707          262 WRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVY  340 (347)
Q Consensus       262 wdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~  340 (347)
                      ||+++++++..+.+|...|.+++|+|++ +|++++.|++|++||++...      ++..+.+|...|++++|+|++++|+
T Consensus       233 wd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~------~~~~~~~h~~~v~~v~~s~~g~~l~  306 (321)
T 3ow8_A          233 YDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT------CVHTFFDHQDQVWGVKYNGNGSKIV  306 (321)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE------EEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             EECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE------EEEEEcCCCCcEEEEEECCCCCEEE
Confidence            9999999999999999999999999997 99999999999999997443      5667788999999999999999999


Q ss_pred             EecCCCC
Q 043707          341 CGSSDGL  347 (347)
Q Consensus       341 sgs~DG~  347 (347)
                      +++.||+
T Consensus       307 s~~~d~~  313 (321)
T 3ow8_A          307 SVGDDQE  313 (321)
T ss_dssp             EEETTCC
T ss_pred             EEeCCCe
Confidence            9999985

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-31  Score=237.37  Aligned_cols=205  Identities=18%  Similarity=0.288  Sum_probs=165.0

Q ss_pred             ceeEeeeeccccEEEEeecCCEEEEecCCCcEEEEeCCC----cceee-ec-CCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 043707          114 GLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLK----EFSGF-KS-NSGLVKAIIITGDSNKIFTGHQDGKIRI  187 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~~----~~~~~-~~-h~~~V~~l~~sp~~~~l~s~~~Dg~I~v  187 (347)
                      .++.++.+|++.|+++++++++|++|+.|++|++||...    ....+ .. |...|.+++|+|++++|++|+.|++|+|
T Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~i   84 (330)
T 2hes_X            5 NLIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSI   84 (330)
T ss_dssp             EEEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             ccceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence            457889999999999999999999999999999999753    23334 34 9999999999999999999999999999


Q ss_pred             EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC-
Q 043707          188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD-  266 (347)
Q Consensus       188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~-  266 (347)
                      ||++........                         ......+.+|...|.+++|+|++++|++|+.|++|++||++. 
T Consensus        85 w~~~~~~~~~~~-------------------------~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~  139 (330)
T 2hes_X           85 WAKEESADRTFE-------------------------MDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDES  139 (330)
T ss_dssp             EEC-------CC-------------------------CEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTT
T ss_pred             EEcccCcCcccc-------------------------ceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCC
Confidence            998643210000                         000112236999999999999999999999999999999943 


Q ss_pred             ---CEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccC--CCEEE
Q 043707          267 ---CKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQE--SAVVY  340 (347)
Q Consensus       267 ---~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~--~~~l~  340 (347)
                         .+++..+.+|...|.+++|+|++ +|++|+.|++|++||.....    ..+...+.+|...|.+++|+|+  +.+|+
T Consensus       140 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~  215 (330)
T 2hes_X          140 GEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD----WECVAVLNGHEGTVWSSDFDKTEGVFRLC  215 (330)
T ss_dssp             CCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE----EEEEEEECCCSSCEEEEEECCSSSSCEEE
T ss_pred             CCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC----eeEEEEccCCCCcEEEEEecCCCCeeEEE
Confidence               36788899999999999999987 99999999999999986432    2356678899999999999998  67999


Q ss_pred             EecCCCC
Q 043707          341 CGSSDGL  347 (347)
Q Consensus       341 sgs~DG~  347 (347)
                      +|+.||+
T Consensus       216 s~s~D~~  222 (330)
T 2hes_X          216 SGSDDST  222 (330)
T ss_dssp             EEETTSC
T ss_pred             EEeCCCe
Confidence            9999985

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=9.9e-31  Score=231.46  Aligned_cols=228  Identities=18%  Similarity=0.251  Sum_probs=181.3

Q ss_pred             ceeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707          114 GLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK  189 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd  189 (347)
                      .+.+++.+|.+.|.++++  ++++|++|+.||+|++||..  +....+..|...|.+++|+|++++|++|+.|++|++||
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd   83 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence            356789999999999986  57799999999999999965  44677889999999999999999999999999999999


Q ss_pred             cCCCCCceeee--------ecccccccceEEeccCCCeEEE-Eeecce--eeeeecCCCeeEEEEcC-CCCEEEEEeCCC
Q 043707          190 VSRKNPSVHKR--------VGSLPTFKDYVKSSVNPKNYVE-VRRNRN--VLKIRHYDAVSCLSLNA-EQGLLYSGSWDK  257 (347)
Q Consensus       190 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg  257 (347)
                      +.+++......        +...|....++..+.+....+. +.....  ....+|...|.+++|+| ++.+|++|+.|+
T Consensus        84 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~  163 (304)
T 2ynn_A           84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR  163 (304)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTS
T ss_pred             CCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCC
Confidence            99886533221        1222333333444444333222 222212  33457999999999999 678999999999


Q ss_pred             cEEEEeCCCCEEEEEEe-cCCCcEEEEEeCC--CC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEc
Q 043707          258 TLKVWRISDCKCLESIN-AHDDAINSVVAGF--DS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVN  333 (347)
Q Consensus       258 ~i~vwdl~~~~~~~~~~-~h~~~v~~i~~~~--~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~  333 (347)
                      +|++||+++.++...+. .|...+..+.|.|  ++ +|++|+.|++|++||++...      +...+.+|...|++++|+
T Consensus       164 ~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~------~~~~~~~h~~~v~~~~~~  237 (304)
T 2ynn_A          164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS------CVATLEGHMSNVSFAVFH  237 (304)
T ss_dssp             EEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE------EEEEEECCSSCEEEEEEC
T ss_pred             eEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc------cceeeCCCCCCEEEEEEC
Confidence            99999999887766664 5567899999987  44 89999999999999998543      567788999999999999


Q ss_pred             cCCCEEEEecCCCC
Q 043707          334 QESAVVYCGSSDGL  347 (347)
Q Consensus       334 p~~~~l~sgs~DG~  347 (347)
                      |++.+|++|+.||+
T Consensus       238 p~~~~l~s~s~Dg~  251 (304)
T 2ynn_A          238 PTLPIIISGSEDGT  251 (304)
T ss_dssp             SSSSEEEEEETTSC
T ss_pred             CCCCEEEEEcCCCe
Confidence            99999999999985

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.8e-31  Score=236.68  Aligned_cols=194  Identities=25%  Similarity=0.451  Sum_probs=169.5

Q ss_pred             eeEeeeeccccEEEEeec---CCEEEEecCCCcEEEEeCC-------CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCc
Q 043707          115 LIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNL-------KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGK  184 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~-------~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~  184 (347)
                      +..++.+|++.|.+++++   +++|++|+.|++|++|+..       ..+..+.+|...|.+++|+|++++|++|+.|++
T Consensus         9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~   88 (319)
T 3frx_A            9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKT   88 (319)
T ss_dssp             EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCE
Confidence            577899999999999975   3699999999999999853       235678899999999999999999999999999


Q ss_pred             EEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 043707          185 IRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI  264 (347)
Q Consensus       185 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl  264 (347)
                      |++||+.+++....                                +.+|...|.+++|+|++.+|++|+.|++|++||+
T Consensus        89 v~~wd~~~~~~~~~--------------------------------~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~  136 (319)
T 3frx_A           89 LRLWDVATGETYQR--------------------------------FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI  136 (319)
T ss_dssp             EEEEETTTTEEEEE--------------------------------EECCSSCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred             EEEEECCCCCeeEE--------------------------------EccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            99999988753211                                2259999999999999999999999999999999


Q ss_pred             CCCEEEEEEecCCCcEEEEEeCCCC-------EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCC
Q 043707          265 SDCKCLESINAHDDAINSVVAGFDS-------LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESA  337 (347)
Q Consensus       265 ~~~~~~~~~~~h~~~v~~i~~~~~~-------~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~  337 (347)
                      + ++++..+.+|...|.++.+.|..       .|++++.|+.|++||++...      ....+.+|...|++++|+|+++
T Consensus       137 ~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~------~~~~~~~h~~~v~~~~~sp~g~  209 (319)
T 3frx_A          137 K-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ------IEADFIGHNSNINTLTASPDGT  209 (319)
T ss_dssp             T-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE------EEEEECCCCSCEEEEEECTTSS
T ss_pred             C-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch------hheeecCCCCcEEEEEEcCCCC
Confidence            6 56788899999999999998842       79999999999999997432      4556778999999999999999


Q ss_pred             EEEEecCCCC
Q 043707          338 VVYCGSSDGL  347 (347)
Q Consensus       338 ~l~sgs~DG~  347 (347)
                      +|++|+.||+
T Consensus       210 ~l~s~~~dg~  219 (319)
T 3frx_A          210 LIASAGKDGE  219 (319)
T ss_dssp             EEEEEETTCE
T ss_pred             EEEEEeCCCe
Confidence            9999999984

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.7e-31  Score=237.23  Aligned_cols=209  Identities=19%  Similarity=0.282  Sum_probs=177.1

Q ss_pred             CCCCCCccccccc-----------------ceeEeeeeccccEEEEeec-CCEEEEecCCCcEEEEeCC--CcceeeecC
Q 043707          101 PYSPNENLLSSCN-----------------GLIGSIVRKEGHIYSLAAS-GDLLYTGSDSKNIRVWKNL--KEFSGFKSN  160 (347)
Q Consensus       101 ~~~p~~~~~~~~~-----------------~~i~~l~~h~~~V~~l~~~-~~~l~tg~~dg~I~vwd~~--~~~~~~~~h  160 (347)
                      .|+|++..++...                 .....+.+|.+.|.++.+. +..+++|+.|++|++||..  +....+.+|
T Consensus       104 ~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h  183 (340)
T 1got_B          104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGH  183 (340)
T ss_dssp             EECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             EECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCC
Confidence            5778877654321                 2456678899999999874 5579999999999999965  446778899


Q ss_pred             CCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeE
Q 043707          161 SGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSC  240 (347)
Q Consensus       161 ~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  240 (347)
                      .+.|.+++|+|++++|++|+.||+|++||++++.....                                +.+|...|.+
T Consensus       184 ~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~--------------------------------~~~h~~~v~~  231 (340)
T 1got_B          184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT--------------------------------FTGHESDINA  231 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE--------------------------------ECCCSSCEEE
T ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEE--------------------------------EcCCcCCEEE
Confidence            99999999999999999999999999999987653211                                1248899999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEec--CCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeeh
Q 043707          241 LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA--HDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLA  317 (347)
Q Consensus       241 l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~--h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~  317 (347)
                      ++|+|++.+|++|+.||+|++||+++++.+..+..  +...|.+++|+|++ +|++|+.|+.|++||+....      ..
T Consensus       232 v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~------~~  305 (340)
T 1got_B          232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD------RA  305 (340)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC------EE
T ss_pred             EEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCc------Ee
Confidence            99999999999999999999999999998887753  23479999999998 99999999999999997543      45


Q ss_pred             hhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          318 QVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       318 ~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      ..+.+|...|++++|+|++.+|++|+.||+
T Consensus       306 ~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~  335 (340)
T 1got_B          306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSF  335 (340)
T ss_dssp             EEEECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred             eEeecCCCcEEEEEEcCCCCEEEEEcCCcc
Confidence            667899999999999999999999999985

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=8e-31  Score=237.44  Aligned_cols=241  Identities=15%  Similarity=0.216  Sum_probs=176.3

Q ss_pred             CCCCCCCcccccccc-----------------------eeEeeeeccccEEEEeecC-CEEEEecCCCcEEEEeCCCc--
Q 043707          100 PPYSPNENLLSSCNG-----------------------LIGSIVRKEGHIYSLAASG-DLLYTGSDSKNIRVWKNLKE--  153 (347)
Q Consensus       100 ~~~~p~~~~~~~~~~-----------------------~i~~l~~h~~~V~~l~~~~-~~l~tg~~dg~I~vwd~~~~--  153 (347)
                      ..|+|+|.++++...                       +.....+|++.|++++|.+ ..+++++.||+|+|||....  
T Consensus        48 v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~  127 (357)
T 4g56_B           48 VRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKES  127 (357)
T ss_dssp             EEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC-------
T ss_pred             EEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccce
Confidence            368899988765421                       2234456888899999863 46778889999999995432  


Q ss_pred             ----ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeee--------cccccccceE-EeccCCCeE
Q 043707          154 ----FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRV--------GSLPTFKDYV-KSSVNPKNY  220 (347)
Q Consensus       154 ----~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~  220 (347)
                          .....+|.+.|.+++|+|++++|++|+.||+|++||+++++.......        ...+....++ ....+....
T Consensus       128 ~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~  207 (357)
T 4g56_B          128 LLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRIL  207 (357)
T ss_dssp             -CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEE
T ss_pred             eEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceE
Confidence                123447999999999999999999999999999999998764332211        1112222222 222222211


Q ss_pred             E-EEeecceee---eeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC--EEEE
Q 043707          221 V-EVRRNRNVL---KIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFT  293 (347)
Q Consensus       221 ~-~~~~~~~~~---~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~--~l~s  293 (347)
                      + ++.......   ...|...+.+++|+|+ +.+|++|+.|+.|++||+++++++..+.+|...|++++|+|++  +|++
T Consensus       208 ~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~las  287 (357)
T 4g56_B          208 LWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLAS  287 (357)
T ss_dssp             ECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEE
T ss_pred             EEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEE
Confidence            1 111222111   2246678999999997 5789999999999999999999999999999999999999986  7899


Q ss_pred             EeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEcc-CCCEEEEecCCCC
Q 043707          294 GSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQ-ESAVVYCGSSDGL  347 (347)
Q Consensus       294 ~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~sgs~DG~  347 (347)
                      |+.|++|+|||++...      +.. ..+|...|++|+|+| ++.+|++||.||+
T Consensus       288 gs~D~~i~iwd~~~~~------~~~-~~~H~~~V~~vafsP~d~~~l~s~s~Dg~  335 (357)
T 4g56_B          288 ISEDCTVAVLDADFSE------VFR-DLSHRDFVTGVAWSPLDHSKFTTVGWDHK  335 (357)
T ss_dssp             EETTSCEEEECTTSCE------EEE-ECCCSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred             EeCCCEEEEEECCCCc------EeE-ECCCCCCEEEEEEeCCCCCEEEEEcCCCe
Confidence            9999999999997542      222 347999999999998 7899999999985

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.9e-30  Score=232.12  Aligned_cols=230  Identities=17%  Similarity=0.276  Sum_probs=177.7

Q ss_pred             ceeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707          114 GLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK  189 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd  189 (347)
                      ....++.+|.+.|+++.++  +++|++|+.||+|+|||..  +....+..|...|.+++|+|++++|++|+.|+.|++||
T Consensus        46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~  125 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN  125 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred             hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            3467899999999999974  7799999999999999954  45677888999999999999999999999999999999


Q ss_pred             cCCCCCce--eeeecccc---------cccceEEeccCCCeEE-EEeecce-eeeeecCCCeeEEEEcCCCCEEEEEeCC
Q 043707          190 VSRKNPSV--HKRVGSLP---------TFKDYVKSSVNPKNYV-EVRRNRN-VLKIRHYDAVSCLSLNAEQGLLYSGSWD  256 (347)
Q Consensus       190 ~~~~~~~~--~~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s~d  256 (347)
                      +.+.....  ........         ....++....+....+ ++..... ..+.+|...|.+++|+|++.+|++|+.|
T Consensus       126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d  205 (340)
T 1got_B          126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD  205 (340)
T ss_dssp             TTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCC
Confidence            98764211  11111110         0111233333332222 2222222 2344699999999999999999999999


Q ss_pred             CcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccC
Q 043707          257 KTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQE  335 (347)
Q Consensus       257 g~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~  335 (347)
                      ++|++||+++++++..+.+|...|.+++|+|++ +|++|+.||+|++||++....    ........+...|++++|+|+
T Consensus       206 ~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~----~~~~~~~~~~~~v~~~~~s~~  281 (340)
T 1got_B          206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE----LMTYSHDNIICGITSVSFSKS  281 (340)
T ss_dssp             SCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE----EEEECCTTCCSCEEEEEECTT
T ss_pred             CcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE----EEEEccCCcccceEEEEECCC
Confidence            999999999999999999999999999999997 999999999999999985432    111112234457999999999


Q ss_pred             CCEEEEecCCCC
Q 043707          336 SAVVYCGSSDGL  347 (347)
Q Consensus       336 ~~~l~sgs~DG~  347 (347)
                      +++|++|+.||.
T Consensus       282 g~~l~~g~~d~~  293 (340)
T 1got_B          282 GRLLLAGYDDFN  293 (340)
T ss_dssp             SSEEEEEETTSE
T ss_pred             CCEEEEECCCCe
Confidence            999999999973

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.98  E-value=1.2e-30  Score=234.83  Aligned_cols=195  Identities=17%  Similarity=0.315  Sum_probs=166.0

Q ss_pred             cceeEeeeeccccEEEEee--------cCCEEEEecCCCcEEEEeCCC---------cceeeecCCCCeeEEEEeCCCCE
Q 043707          113 NGLIGSIVRKEGHIYSLAA--------SGDLLYTGSDSKNIRVWKNLK---------EFSGFKSNSGLVKAIIITGDSNK  175 (347)
Q Consensus       113 ~~~i~~l~~h~~~V~~l~~--------~~~~l~tg~~dg~I~vwd~~~---------~~~~~~~h~~~V~~l~~sp~~~~  175 (347)
                      ..+...+.+|.+.|+++.+        ++++|++|+.|++|++||...         ....+.+|...|.+++|+|++.+
T Consensus        11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~   90 (343)
T 2xzm_R           11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF   90 (343)
T ss_dssp             EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred             eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence            3457789999999999987        577999999999999999542         24567899999999999999999


Q ss_pred             EEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC
Q 043707          176 IFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW  255 (347)
Q Consensus       176 l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~  255 (347)
                      +++|+.|++|++||+++++....                                +.+|...|.+++|+|++.+|++++.
T Consensus        91 l~s~s~D~~v~lwd~~~~~~~~~--------------------------------~~~h~~~v~~v~~sp~~~~l~s~~~  138 (343)
T 2xzm_R           91 AISSSWDKTLRLWDLRTGTTYKR--------------------------------FVGHQSEVYSVAFSPDNRQILSAGA  138 (343)
T ss_dssp             EEEEETTSEEEEEETTSSCEEEE--------------------------------EECCCSCEEEEEECSSTTEEEEEET
T ss_pred             EEEEcCCCcEEEEECCCCcEEEE--------------------------------EcCCCCcEEEEEECCCCCEEEEEcC
Confidence            99999999999999988753211                                1259999999999999999999999


Q ss_pred             CCcEEEEeCCCCEEEEEEe---cCCCcEEEEEeCCCC-----------EEEEEeCCCcEEEEEcccCCccceeeehhhhh
Q 043707          256 DKTLKVWRISDCKCLESIN---AHDDAINSVVAGFDS-----------LVFTGSADGTVKVWRRELQGKGTKHFLAQVLL  321 (347)
Q Consensus       256 dg~i~vwdl~~~~~~~~~~---~h~~~v~~i~~~~~~-----------~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~  321 (347)
                      |++|++||+.. +....+.   .|...|.++.|+|++           +|++++.|+.|++||..  ..     ....+.
T Consensus       139 d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~-----~~~~~~  210 (343)
T 2xzm_R          139 EREIKLWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQ-----IRYTFK  210 (343)
T ss_dssp             TSCEEEEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TE-----EEEEEE
T ss_pred             CCEEEEEeccC-CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--Cc-----eeEEEc
Confidence            99999999984 3443433   788999999999874           79999999999999953  21     445677


Q ss_pred             ccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          322 KQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       322 ~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      +|...|++++|+|++++|++|+.||+
T Consensus       211 ~h~~~v~~~~~s~~g~~l~sgs~dg~  236 (343)
T 2xzm_R          211 AHESNVNHLSISPNGKYIATGGKDKK  236 (343)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTCE
T ss_pred             CccccceEEEECCCCCEEEEEcCCCe
Confidence            89999999999999999999999984

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.98  E-value=8e-31  Score=241.81  Aligned_cols=194  Identities=19%  Similarity=0.293  Sum_probs=172.0

Q ss_pred             eEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecC
Q 043707          116 IGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVS  191 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~  191 (347)
                      ...+.+|.+.|+++.++  +.+|++|+.||+|+|||..  +....+.+|.+.|.+++|+|++++|++|+.||+|++||+.
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~  180 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ  180 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence            45678999999999875  6799999999999999954  4577889999999999999999999999999999999998


Q ss_pred             CCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEE
Q 043707          192 RKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE  271 (347)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~  271 (347)
                      +.+....                                ..+|...|.+++|+|++.+|++|+.|++|++||+++++++.
T Consensus       181 ~~~~~~~--------------------------------~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~  228 (410)
T 1vyh_C          181 GFECIRT--------------------------------MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK  228 (410)
T ss_dssp             SSCEEEC--------------------------------CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCceeEE--------------------------------EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            7642211                                11489999999999999999999999999999999999999


Q ss_pred             EEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccC---------------
Q 043707          272 SINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQE---------------  335 (347)
Q Consensus       272 ~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~---------------  335 (347)
                      .+.+|...|.++.+++++ +|++|+.|+.|++||++...      ....+..|...|.+++|+|+               
T Consensus       229 ~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~  302 (410)
T 1vyh_C          229 TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE------CKAELREHRHVVECISWAPESSYSSISEATGSETK  302 (410)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC------EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC--
T ss_pred             EEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc------eeeEecCCCceEEEEEEcCcccccchhhhcccccc
Confidence            999999999999999998 89999999999999997543      45567789999999999996               


Q ss_pred             -----CCEEEEecCCCC
Q 043707          336 -----SAVVYCGSSDGL  347 (347)
Q Consensus       336 -----~~~l~sgs~DG~  347 (347)
                           +.+|++|+.||+
T Consensus       303 ~~~~~g~~l~sgs~D~~  319 (410)
T 1vyh_C          303 KSGKPGPFLLSGSRDKT  319 (410)
T ss_dssp             -----CCEEEEEETTSE
T ss_pred             ccCCCCCEEEEEeCCCe
Confidence                 678999999974

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.98  E-value=2e-30  Score=234.56  Aligned_cols=195  Identities=18%  Similarity=0.231  Sum_probs=168.3

Q ss_pred             eeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeC--CCCEEEEEeCCCcEEEE
Q 043707          115 LIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITG--DSNKIFTGHQDGKIRIW  188 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp--~~~~l~s~~~Dg~I~vw  188 (347)
                      ....+.+|.+.|.++.+.  +..|++|+.|++|++||..  +.+..+.+|...|.+++|+|  ++++|++|+.||+|++|
T Consensus       146 ~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~w  225 (354)
T 2pbi_B          146 KKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW  225 (354)
T ss_dssp             GCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEE
T ss_pred             cceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEE
Confidence            356677899999998874  6699999999999999965  45678899999999999988  56899999999999999


Q ss_pred             ecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCE
Q 043707          189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK  268 (347)
Q Consensus       189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~  268 (347)
                      |+++++.....                                ..|...|.+++|+|++.+|++++.|++|++||++..+
T Consensus       226 d~~~~~~~~~~--------------------------------~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~  273 (354)
T 2pbi_B          226 DMRSGQCVQAF--------------------------------ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR  273 (354)
T ss_dssp             ETTTCCEEEEE--------------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             ECCCCcEEEEe--------------------------------cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence            99887532211                                2489999999999999999999999999999999998


Q ss_pred             EEEEEecC--CCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707          269 CLESINAH--DDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       269 ~~~~~~~h--~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                      .+..+..+  ...+.+++|+|++ +|++|+.|+.|++||+..+.      ....+.+|...|++++|+|++++|++|+.|
T Consensus       274 ~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~------~~~~l~~h~~~v~~l~~spdg~~l~sgs~D  347 (354)
T 2pbi_B          274 EVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS------RVSILFGHENRVSTLRVSPDGTAFCSGSWD  347 (354)
T ss_dssp             EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS------EEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             EEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc------eEEEEECCCCcEEEEEECCCCCEEEEEcCC
Confidence            88777644  3478999999998 89999999999999997543      456678899999999999999999999999


Q ss_pred             CC
Q 043707          346 GL  347 (347)
Q Consensus       346 G~  347 (347)
                      |+
T Consensus       348 ~~  349 (354)
T 2pbi_B          348 HT  349 (354)
T ss_dssp             SE
T ss_pred             CC
Confidence            84

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.98  E-value=9.9e-30  Score=229.11  Aligned_cols=228  Identities=17%  Similarity=0.238  Sum_probs=172.7

Q ss_pred             eeccccEEEEee--cCCEEEEecCCCcEEEEeCCC----cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 043707          120 VRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK----EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRK  193 (347)
Q Consensus       120 ~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~----~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~  193 (347)
                      .+|.+.|.++++  ++++|++|+.|++|+||+...    ....+.+|...|.+++|+|++++|++|+.|++|++||++..
T Consensus        58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~  137 (345)
T 3fm0_A           58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE  137 (345)
T ss_dssp             SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTT
T ss_pred             cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCC
Confidence            579999999987  477999999999999998543    35678899999999999999999999999999999999876


Q ss_pred             CCceee-----------eecccccccceEEeccCCCeEE-EEeecc---eeeeeecCCCeeEEEEcCCCCEEEEEeCCCc
Q 043707          194 NPSVHK-----------RVGSLPTFKDYVKSSVNPKNYV-EVRRNR---NVLKIRHYDAVSCLSLNAEQGLLYSGSWDKT  258 (347)
Q Consensus       194 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~  258 (347)
                      ......           .+...|....++....+....+ +.....   .....+|...|.+++|+|++.+|++++.|++
T Consensus       138 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~  217 (345)
T 3fm0_A          138 DEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT  217 (345)
T ss_dssp             SCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe
Confidence            432111           1112233333444444443332 222222   1234579999999999999999999999999


Q ss_pred             EEEEeCCC---------------CEEEEEEec-CCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccc---eeeehh
Q 043707          259 LKVWRISD---------------CKCLESINA-HDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGT---KHFLAQ  318 (347)
Q Consensus       259 i~vwdl~~---------------~~~~~~~~~-h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~---~~~~~~  318 (347)
                      |+|||+..               .+++..+.+ |...|.+++|++++ .|++++.|+.|++|+........   ......
T Consensus       218 v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~  297 (345)
T 3fm0_A          218 VRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAH  297 (345)
T ss_dssp             EEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEE
T ss_pred             EEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEee
Confidence            99999632               245556655 88899999999987 99999999999999987543211   111223


Q ss_pred             hhhccCCcEEEEEEccCC-CEEEEecCCCC
Q 043707          319 VLLKQENAITALAVNQES-AVVYCGSSDGL  347 (347)
Q Consensus       319 ~~~~h~~~V~~l~~~p~~-~~l~sgs~DG~  347 (347)
                      ...+|...|++|+|+|++ .+|++|+.||+
T Consensus       298 ~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~  327 (345)
T 3fm0_A          298 LHQAHSQDVNCVAWNPKEPGLLASCSDDGE  327 (345)
T ss_dssp             ETTSSSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred             ecccccCcEeEeEEeCCCceEEEEcCCCCc
Confidence            456899999999999998 59999999985

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.98  E-value=4.7e-30  Score=227.53  Aligned_cols=197  Identities=22%  Similarity=0.403  Sum_probs=171.2

Q ss_pred             ceeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707          114 GLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK  189 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd  189 (347)
                      .+..++.+|.+.|.+++++  +++|++|+.||.|++|+..  +....+.+|...|.+++|+|++++|++|+.||.|++||
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd   93 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD   93 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence            4467888999999999874  7799999999999999964  44667889999999999999999999999999999999


Q ss_pred             cCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEE
Q 043707          190 VSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC  269 (347)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~  269 (347)
                      +++++....                                ..+|...|.+++|+|++.+|++|+.|++|++||++++++
T Consensus        94 ~~~~~~~~~--------------------------------~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  141 (312)
T 4ery_A           94 VSSGKCLKT--------------------------------LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC  141 (312)
T ss_dssp             TTTCCEEEE--------------------------------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred             CCCCcEEEE--------------------------------EcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE
Confidence            987753221                                124889999999999999999999999999999999999


Q ss_pred             EEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          270 LESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       270 ~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      +..+..|...|.++.|+|++ +|++++.||.|++||++....     .......+...+..++|+|++++|++++.||.
T Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  215 (312)
T 4ery_A          142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-----LKTLIDDDNPPVSFVKFSPNGKYILAATLDNT  215 (312)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----EEEECCSSCCCEEEEEECTTSSEEEEEETTTE
T ss_pred             EEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-----eeEEeccCCCceEEEEECCCCCEEEEEcCCCe
Confidence            99999999999999999987 899999999999999985432     22223456678999999999999999999873

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=1.2e-30  Score=232.13  Aligned_cols=228  Identities=15%  Similarity=0.177  Sum_probs=166.6

Q ss_pred             eeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCC----cceeeecCCCCeeEEEEeC--CCCEEEEEeCCCcEEEEe
Q 043707          118 SIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK----EFSGFKSNSGLVKAIIITG--DSNKIFTGHQDGKIRIWK  189 (347)
Q Consensus       118 ~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~----~~~~~~~h~~~V~~l~~sp--~~~~l~s~~~Dg~I~vwd  189 (347)
                      .+.+|++.|+++++  +|++|++|+.|++|+|||...    .+..+.+|.+.|.+++|++  ++++|++|+.|++|++||
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            45689999999886  588999999999999999643    3567889999999999986  488999999999999999


Q ss_pred             cCCCCCceeeeec----------cccc--ccceEEeccCCCeEE-EEeecc----eeeeeecCCCeeEEEEcCC------
Q 043707          190 VSRKNPSVHKRVG----------SLPT--FKDYVKSSVNPKNYV-EVRRNR----NVLKIRHYDAVSCLSLNAE------  246 (347)
Q Consensus       190 ~~~~~~~~~~~~~----------~~~~--~~~~~~~~~~~~~~~-~~~~~~----~~~~~~h~~~V~~l~~~~~------  246 (347)
                      +++++........          ..|.  ...++....+....+ +.....    .....+|...|.+++|+|+      
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  167 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL  167 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence            9876432211111          1122  112223333333222 222211    1223468889999999997      


Q ss_pred             -----------CCEEEEEeCCCcEEEEeCCCC---EEEEEEecCCCcEEEEEeCCCC-----EEEEEeCCCcEEEEEccc
Q 043707          247 -----------QGLLYSGSWDKTLKVWRISDC---KCLESINAHDDAINSVVAGFDS-----LVFTGSADGTVKVWRREL  307 (347)
Q Consensus       247 -----------~~~l~s~s~dg~i~vwdl~~~---~~~~~~~~h~~~v~~i~~~~~~-----~l~s~~~dg~I~vwd~~~  307 (347)
                                 +.+|++|+.|++|++||++..   +++..+.+|...|.+++|+|++     +|++++.|++|++|+++.
T Consensus       168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred             cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence                       468999999999999999765   5778889999999999999973     899999999999999975


Q ss_pred             CCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          308 QGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       308 ~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      ...  .......+..|...|.+++|+|++++|++|+.||+
T Consensus       248 ~~~--~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~  285 (316)
T 3bg1_A          248 ASS--NTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNK  285 (316)
T ss_dssp             TTC--CCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSC
T ss_pred             ccc--cchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCe
Confidence            211  00122344678899999999999999999999985

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=2.3e-29  Score=224.92  Aligned_cols=234  Identities=21%  Similarity=0.384  Sum_probs=175.2

Q ss_pred             ceeEeeeeccccEEEEeec---CCEEEEecCCCcEEEEeCCC-------cceeeecCCCCeeEEEEeCCCCEEEEEeCCC
Q 043707          114 GLIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLK-------EFSGFKSNSGLVKAIIITGDSNKIFTGHQDG  183 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~~-------~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg  183 (347)
                      .+..+|++|++.|++++++   +++|+||+.||+|+|||+.+       ....+.+|...|.+++|+|++++|++|+.|+
T Consensus        29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~  108 (340)
T 4aow_A           29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG  108 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence            4567899999999999985   56999999999999999542       2456788999999999999999999999999


Q ss_pred             cEEEEecCCCCCceeeeec--------ccccccceEEeccCCCeEEEEeecc---eeeeeecCCCeeEEEEcCC--CCEE
Q 043707          184 KIRIWKVSRKNPSVHKRVG--------SLPTFKDYVKSSVNPKNYVEVRRNR---NVLKIRHYDAVSCLSLNAE--QGLL  250 (347)
Q Consensus       184 ~I~vwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~h~~~V~~l~~~~~--~~~l  250 (347)
                      .|++|+.............        ..+....++....+....+......   .....+|...+.+++|+++  ..++
T Consensus       109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  188 (340)
T 4aow_A          109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII  188 (340)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEE
T ss_pred             cceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEE
Confidence            9999999876543222111        1112222222333222222111111   1223468899999999886  4678


Q ss_pred             EEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccc-----------------
Q 043707          251 YSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGT-----------------  312 (347)
Q Consensus       251 ~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~-----------------  312 (347)
                      ++++.|+.|++||+++++++..+.+|...|.+++|+|++ +|++|+.||.|++||++......                 
T Consensus       189 ~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  268 (340)
T 4aow_A          189 VSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNR  268 (340)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSS
T ss_pred             EEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCC
Confidence            999999999999999999999999999999999999997 99999999999999987532200                 


Q ss_pred             --------------------------eeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          313 --------------------------KHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       313 --------------------------~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                                                ..........|...|++|+|+|++++|++|+.||+
T Consensus       269 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~  329 (340)
T 4aow_A          269 YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNL  329 (340)
T ss_dssp             SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSC
T ss_pred             ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence                                      00001123467889999999999999999999985

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.97  E-value=1.1e-29  Score=229.66  Aligned_cols=202  Identities=14%  Similarity=0.192  Sum_probs=173.7

Q ss_pred             ceeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707          114 GLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK  189 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd  189 (347)
                      ....++.+|.+.|++++++  +++|++|+.||+|+|||..  +....+..|...|.+++|+|++.+|++|+.|+.+++|+
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP  134 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence            4578899999999999974  7799999999999999954  44566778889999999999999999999999999999


Q ss_pred             cCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEE
Q 043707          190 VSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC  269 (347)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~  269 (347)
                      +..........                          .......|...|.+++|+|++..|++++.|++|++||++++++
T Consensus       135 ~~~~~~~~~~~--------------------------~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~  188 (354)
T 2pbi_B          135 LTFDKNENMAA--------------------------KKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL  188 (354)
T ss_dssp             CCCCTTCCSGG--------------------------GCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE
T ss_pred             Eeccccccccc--------------------------cceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE
Confidence            87543211000                          0111235999999999999999999999999999999999999


Q ss_pred             EEEEecCCCcEEEEEeCCC--C-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          270 LESINAHDDAINSVVAGFD--S-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       270 ~~~~~~h~~~v~~i~~~~~--~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      +..+.+|...|.++.++|+  + +|++|+.||.|++||++...      +...+..|...|++++|+|++.+|++|+.||
T Consensus       189 ~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~  262 (354)
T 2pbi_B          189 LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ------CVQAFETHESDVNSVRYYPSGDAFASGSDDA  262 (354)
T ss_dssp             EEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC------EEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc------EEEEecCCCCCeEEEEEeCCCCEEEEEeCCC
Confidence            9999999999999999874  3 99999999999999998543      4566788999999999999999999999998


Q ss_pred             C
Q 043707          347 L  347 (347)
Q Consensus       347 ~  347 (347)
                      +
T Consensus       263 ~  263 (354)
T 2pbi_B          263 T  263 (354)
T ss_dssp             C
T ss_pred             e
Confidence            5

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.97  E-value=1.9e-29  Score=231.31  Aligned_cols=217  Identities=23%  Similarity=0.350  Sum_probs=166.2

Q ss_pred             cEEEEee--cCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeee
Q 043707          125 HIYSLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKR  200 (347)
Q Consensus       125 ~V~~l~~--~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~  200 (347)
                      .|.++++  ++++|++|+.|+.|+|||..  +....+.+|...|.+++|+|++++|++|+.|++|++||+++++......
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~  204 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS  204 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE
Confidence            3778776  57899999999999999965  3466788999999999999999999999999999999998876432221


Q ss_pred             e-------cccc-cccceEEeccCCCeEE-EEeecceee--------eeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 043707          201 V-------GSLP-TFKDYVKSSVNPKNYV-EVRRNRNVL--------KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWR  263 (347)
Q Consensus       201 ~-------~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~--------~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwd  263 (347)
                      .       ...+ ....++....+....+ +........        ..+|...|.+++|+|++.+|++|+.|++|++||
T Consensus       205 ~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd  284 (393)
T 1erj_A          205 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN  284 (393)
T ss_dssp             CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            1       1112 1122222222222211 111111111        146889999999999999999999999999999


Q ss_pred             CCCC------------EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEE
Q 043707          264 ISDC------------KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITAL  330 (347)
Q Consensus       264 l~~~------------~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l  330 (347)
                      +++.            .+...+.+|...|.+++|++++ +|++|+.|+.|++||++.+.      +...+.+|...|.++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~------~~~~l~~h~~~v~~v  358 (393)
T 1erj_A          285 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN------PLLMLQGHRNSVISV  358 (393)
T ss_dssp             C---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC------EEEEEECCSSCEEEE
T ss_pred             CCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCe------EEEEECCCCCCEEEE
Confidence            9753            4566788999999999999987 99999999999999997543      456778999999999


Q ss_pred             EEcc------CCCEEEEecCCCC
Q 043707          331 AVNQ------ESAVVYCGSSDGL  347 (347)
Q Consensus       331 ~~~p------~~~~l~sgs~DG~  347 (347)
                      +|++      ++.+|++|+.||+
T Consensus       359 ~~~~~~~~~p~~~~l~sgs~Dg~  381 (393)
T 1erj_A          359 AVANGSSLGPEYNVFATGSGDCK  381 (393)
T ss_dssp             EECSSCTTCTTCEEEEEEETTSE
T ss_pred             EecCCcCcCCCCCEEEEECCCCc
Confidence            9986      6889999999984

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.97  E-value=3.6e-29  Score=242.24  Aligned_cols=249  Identities=18%  Similarity=0.203  Sum_probs=183.9

Q ss_pred             CCCCCCCCcccccc------------cceeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCC----cceeeecC
Q 043707           99 MPPYSPNENLLSSC------------NGLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK----EFSGFKSN  160 (347)
Q Consensus        99 ~~~~~p~~~~~~~~------------~~~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~----~~~~~~~h  160 (347)
                      ...|+|+|+.++..            ...+..+.+|.+.|+++++  +|++|++|+.||+|+|||...    ....+.+|
T Consensus        23 ~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~  102 (611)
T 1nr0_A           23 VLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVF  102 (611)
T ss_dssp             CCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECS
T ss_pred             EEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeeccc
Confidence            34577887655432            2356778899999998886  578999999999999999642    23467889


Q ss_pred             CCCeeEEEEeCCCCEEEEEeCC----CcEEEEecCCCCC------ceeeeecccccccc-eEEeccCCCeEEEEeec-c-
Q 043707          161 SGLVKAIIITGDSNKIFTGHQD----GKIRIWKVSRKNP------SVHKRVGSLPTFKD-YVKSSVNPKNYVEVRRN-R-  227 (347)
Q Consensus       161 ~~~V~~l~~sp~~~~l~s~~~D----g~I~vwd~~~~~~------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~-  227 (347)
                      .+.|.+++|+|++++|++++.+    +.|++||......      .....+...|.... ++....+....+..... . 
T Consensus       103 ~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~  182 (611)
T 1nr0_A          103 SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF  182 (611)
T ss_dssp             SSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE
T ss_pred             CCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeE
Confidence            9999999999999999999875    4788888532211      01112222233222 33333333222221111 1 


Q ss_pred             eeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEe-------cCCCcEEEEEeCCCC-EEEEEeCCCc
Q 043707          228 NVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN-------AHDDAINSVVAGFDS-LVFTGSADGT  299 (347)
Q Consensus       228 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~-------~h~~~v~~i~~~~~~-~l~s~~~dg~  299 (347)
                      ...+.+|...|.+++|+|++.+|++++.|++|++||+.+++++..+.       +|.+.|.+++|+|++ +|++++.|++
T Consensus       183 ~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~  262 (611)
T 1nr0_A          183 KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT  262 (611)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             eeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCe
Confidence            12345799999999999999999999999999999999999998884       799999999999998 8999999999


Q ss_pred             EEEEEcccCCcccee-------------------------------------eehhhhhccCCcEEEEEEccCCCEEEEe
Q 043707          300 VKVWRRELQGKGTKH-------------------------------------FLAQVLLKQENAITALAVNQESAVVYCG  342 (347)
Q Consensus       300 I~vwd~~~~~~~~~~-------------------------------------~~~~~~~~h~~~V~~l~~~p~~~~l~sg  342 (347)
                      |++||++........                                     .+...+.+|...|++++|+|++++|+++
T Consensus       263 v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~  342 (611)
T 1nr0_A          263 IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSA  342 (611)
T ss_dssp             EEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEE
Confidence            999999754321000                                     0223456899999999999999999999


Q ss_pred             cCCCC
Q 043707          343 SSDGL  347 (347)
Q Consensus       343 s~DG~  347 (347)
                      +.||+
T Consensus       343 s~D~~  347 (611)
T 1nr0_A          343 DAEGH  347 (611)
T ss_dssp             ETTSC
T ss_pred             eCCCc
Confidence            99985

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.97  E-value=9.5e-30  Score=232.23  Aligned_cols=227  Identities=21%  Similarity=0.339  Sum_probs=173.4

Q ss_pred             eeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEec
Q 043707          115 LIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKV  190 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~  190 (347)
                      ...++.+|.+.|++++++  +++|++|+.||+|+|||..  +....+..|...|.+++|+|++++|++|+.|+.|++||+
T Consensus        58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~  137 (380)
T 3iz6_a           58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL  137 (380)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred             EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence            467899999999999874  7799999999999999954  456778899999999999999999999999999999999


Q ss_pred             CCCCCc-----ee----------eeecccccccc-eEEeccCCCeEE-EEeecceeee------eecCCCeeEEEEcC-C
Q 043707          191 SRKNPS-----VH----------KRVGSLPTFKD-YVKSSVNPKNYV-EVRRNRNVLK------IRHYDAVSCLSLNA-E  246 (347)
Q Consensus       191 ~~~~~~-----~~----------~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~------~~h~~~V~~l~~~~-~  246 (347)
                      ......     ..          ..+...+.... ++..+.+....+ ++........      .+|...|.+++|++ +
T Consensus       138 ~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  217 (380)
T 3iz6_a          138 SSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLN  217 (380)
T ss_dssp             CCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSS
T ss_pred             CCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCC
Confidence            753211     00          00111122122 333333332222 2222222221      46889999999987 7


Q ss_pred             CCEEEEEeCCCcEEEEeCC-CCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhh---
Q 043707          247 QGLLYSGSWDKTLKVWRIS-DCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLL---  321 (347)
Q Consensus       247 ~~~l~s~s~dg~i~vwdl~-~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~---  321 (347)
                      +.+|++|+.|++|++||++ ..+++..+.+|...|.+++|+|++ +|++|+.||+|++||++.+..      ...+.   
T Consensus       218 ~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~------~~~~~~~~  291 (380)
T 3iz6_a          218 ANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ------LQVYNREP  291 (380)
T ss_dssp             CCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEE------EEEECCCC
T ss_pred             CCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcE------EEEecccc
Confidence            8999999999999999998 557888999999999999999998 999999999999999985432      22221   


Q ss_pred             ----ccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          322 ----KQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       322 ----~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                          .+...|++++|+|++++|++|+.||.
T Consensus       292 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~  321 (380)
T 3iz6_a          292 DRNDNELPIVTSVAFSISGRLLFAGYSNGD  321 (380)
T ss_dssp             SSSCCSSCSCSEEEECSSSSEEEEECTTSC
T ss_pred             cccccccCceEEEEECCCCCEEEEEECCCC
Confidence                22345899999999999999999984

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.97  E-value=8.4e-30  Score=232.57  Aligned_cols=241  Identities=19%  Similarity=0.275  Sum_probs=183.5

Q ss_pred             CCCCCccccCCCCCCCCC-----CCCCCCCCCCCCCCCccccccc--------------------ceeEeeeeccccEEE
Q 043707           74 GEASPYLMSPWNNQPVSP-----YTKSPWLMPPYSPNENLLSSCN--------------------GLIGSIVRKEGHIYS  128 (347)
Q Consensus        74 ~~~s~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~--------------------~~i~~l~~h~~~V~~  128 (347)
                      ..+...+...|+......     ..........|+|++..++...                    .....+.+|.+.|.+
T Consensus        83 s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~  162 (380)
T 3iz6_a           83 SASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASS  162 (380)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCC
T ss_pred             EEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEE
Confidence            334456677776522111     1122234446888887765432                    123457789999988


Q ss_pred             Eeec---CCEEEEecCCCcEEEEeCCCc--ceee-----ecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCce
Q 043707          129 LAAS---GDLLYTGSDSKNIRVWKNLKE--FSGF-----KSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSV  197 (347)
Q Consensus       129 l~~~---~~~l~tg~~dg~I~vwd~~~~--~~~~-----~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~  197 (347)
                      +.+.   +..|++|+.|++|++||....  +..+     .+|...|.+++|++ ++++|++|+.||+|++||++......
T Consensus       163 ~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~  242 (380)
T 3iz6_a          163 CQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAV  242 (380)
T ss_dssp             CBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCC
T ss_pred             EEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcce
Confidence            8864   457999999999999996543  3333     57899999999987 88899999999999999998543211


Q ss_pred             eeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCC
Q 043707          198 HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHD  277 (347)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~  277 (347)
                      ..                               ..+|...|.+++|+|++.+|++|+.||+|++||+++++++..+..+.
T Consensus       243 ~~-------------------------------~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~  291 (380)
T 3iz6_a          243 RT-------------------------------YHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREP  291 (380)
T ss_dssp             EE-------------------------------ECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCC
T ss_pred             EE-------------------------------ECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccc
Confidence            11                               12599999999999999999999999999999999999998886543


Q ss_pred             C-------cEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          278 D-------AINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       278 ~-------~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      .       .|.+++|+|++ +|++|+.||.|++||+.....  ...+.....+|...|++++|+|++++|++|+.||+
T Consensus       292 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~--~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~  367 (380)
T 3iz6_a          292 DRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEM--VLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKN  367 (380)
T ss_dssp             SSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCE--EEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSC
T ss_pred             cccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCce--EEEEecccCCCCCceEEEEECCCCCEEEEeeCCCC
Confidence            2       48999999998 999999999999999875432  11122233679999999999999999999999985

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2e-28  Score=220.76  Aligned_cols=244  Identities=17%  Similarity=0.220  Sum_probs=183.5

Q ss_pred             CCCcccccccceeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEE
Q 043707          104 PNENLLSSCNGLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTG  179 (347)
Q Consensus       104 p~~~~~~~~~~~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~  179 (347)
                      ..+....+.......+.+|.+.|+++++  ++++|++|+.||.|++||..  +....+.+|...|.+++|+|++++|+++
T Consensus        13 ~~~~~~~G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~   92 (369)
T 3zwl_B           13 GENLYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTG   92 (369)
T ss_dssp             CCCCCSSCCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CcceEEeccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEE
Confidence            3333333344456778999999999987  57799999999999999954  5577888999999999999999999999


Q ss_pred             eCCCcEEEEecCCCCCceeeee-------cccccccceEEeccC-----CC-eEEEEeecc------------eeeeeec
Q 043707          180 HQDGKIRIWKVSRKNPSVHKRV-------GSLPTFKDYVKSSVN-----PK-NYVEVRRNR------------NVLKIRH  234 (347)
Q Consensus       180 ~~Dg~I~vwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-----~~-~~~~~~~~~------------~~~~~~h  234 (347)
                      +.||.|++||+.+++.......       ...+....++....+     .. .++++....            ......|
T Consensus        93 ~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  172 (369)
T 3zwl_B           93 SADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITH  172 (369)
T ss_dssp             ETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECC
T ss_pred             eCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCC
Confidence            9999999999998865433321       112222222222222     11 222222221            1222344


Q ss_pred             CC--CeeEEEEcCCCCEEEEEeCCCcEEEEeCCC-CEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCc
Q 043707          235 YD--AVSCLSLNAEQGLLYSGSWDKTLKVWRISD-CKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGK  310 (347)
Q Consensus       235 ~~--~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~-~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~  310 (347)
                      ..  .+.+++|+|++.+|++++.||.|++||+++ .+.+..+..|...|.+++|+|++ +|++++.|+.|++||++....
T Consensus       173 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  252 (369)
T 3zwl_B          173 EGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV  252 (369)
T ss_dssp             TTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             cCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCce
Confidence            44  899999999999999999999999999998 78999999999999999999998 899999999999999975432


Q ss_pred             cce-------------------------------------------------eeehhhhhccCCcEEEEEEccCCCEEEE
Q 043707          311 GTK-------------------------------------------------HFLAQVLLKQENAITALAVNQESAVVYC  341 (347)
Q Consensus       311 ~~~-------------------------------------------------~~~~~~~~~h~~~V~~l~~~p~~~~l~s  341 (347)
                      ...                                                 ......+.+|...|++++|+|++++|++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  332 (369)
T 3zwl_B          253 LKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYAS  332 (369)
T ss_dssp             EEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             eeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEE
Confidence            000                                                 0112234568889999999999999999


Q ss_pred             ecCCCC
Q 043707          342 GSSDGL  347 (347)
Q Consensus       342 gs~DG~  347 (347)
                      ++.||.
T Consensus       333 ~~~dg~  338 (369)
T 3zwl_B          333 GGEDGF  338 (369)
T ss_dssp             EETTSE
T ss_pred             EcCCCe
Confidence            999983

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8.6e-30  Score=228.10  Aligned_cols=200  Identities=23%  Similarity=0.304  Sum_probs=156.9

Q ss_pred             eeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC------CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEE
Q 043707          115 LIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL------KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIR  186 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~------~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~  186 (347)
                      ++..+.+|++.|.++++  ++++|++|+.|++|++||..      +.+..+.+|...|.+++|+|++.+|++|+.|++|+
T Consensus        99 ~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~  178 (330)
T 2hes_X           99 LLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVR  178 (330)
T ss_dssp             EEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred             eEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEE
Confidence            46678899999999987  47799999999999999973      23456788999999999999999999999999999


Q ss_pred             EEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC--CCEEEEEeCCCcEEEEeC
Q 043707          187 IWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE--QGLLYSGSWDKTLKVWRI  264 (347)
Q Consensus       187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~dg~i~vwdl  264 (347)
                      +||+..+.....                              ..+.+|...|.+++|+|+  +.+|++|+.|++|++||+
T Consensus       179 iW~~~~~~~~~~------------------------------~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~  228 (330)
T 2hes_X          179 IWKDYDDDWECV------------------------------AVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY  228 (330)
T ss_dssp             EEEEETTEEEEE------------------------------EEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEE
T ss_pred             EEECCCCCeeEE------------------------------EEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEe
Confidence            999875421111                              112259999999999998  678999999999999998


Q ss_pred             CCC--------EEEEEEec-CCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCC-cEEEEEEcc
Q 043707          265 SDC--------KCLESINA-HDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQEN-AITALAVNQ  334 (347)
Q Consensus       265 ~~~--------~~~~~~~~-h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~-~V~~l~~~p  334 (347)
                      +.+        .++..+.. |...|.+++|+++++|++++.||.|++||...+..   ......+..|.. .|.+++|+|
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~---~~~~~~~~~h~~~~v~~v~~~~  305 (330)
T 2hes_X          229 MGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEW---KVFAKRALCHGVYEINVVKWLE  305 (330)
T ss_dssp             EEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEE---EEEEEESCTTTTSCEEEEEEC-
T ss_pred             cCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCce---EEEeccccccccceEEEEEEec
Confidence            754        45555654 89999999999888999999999999999864321   112233456776 899999999


Q ss_pred             --CCCEEEEecCCCC
Q 043707          335 --ESAVVYCGSSDGL  347 (347)
Q Consensus       335 --~~~~l~sgs~DG~  347 (347)
                        ++++|++|+.||+
T Consensus       306 ~~~~~~las~s~Dg~  320 (330)
T 2hes_X          306 LNGKTILATGGDDGI  320 (330)
T ss_dssp             ----CCEEEEETTSE
T ss_pred             CCCceEEEEecCCCc
Confidence              6899999999984

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.97  E-value=5.5e-29  Score=223.95  Aligned_cols=231  Identities=17%  Similarity=0.240  Sum_probs=168.4

Q ss_pred             ceeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707          114 GLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK  189 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd  189 (347)
                      .....+.+|...|.++.+  ++.+|++|+.|++|++||..  +....+.+|...|.+++|+|++++|++|+.|++|++||
T Consensus        67 ~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd  146 (343)
T 2xzm_R           67 IPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN  146 (343)
T ss_dssp             EEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEE
T ss_pred             cccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEe
Confidence            346778899999999887  47799999999999999965  45678889999999999999999999999999999999


Q ss_pred             cCCCCCcee----------eeecccccc----------cceEEeccCCCeEEEEeecc---eeeeeecCCCeeEEEEcCC
Q 043707          190 VSRKNPSVH----------KRVGSLPTF----------KDYVKSSVNPKNYVEVRRNR---NVLKIRHYDAVSCLSLNAE  246 (347)
Q Consensus       190 ~~~~~~~~~----------~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~---~~~~~~h~~~V~~l~~~~~  246 (347)
                      +........          ..+...+..          ..++....+..  +.++...   .....+|...|.+++|+|+
T Consensus       147 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~h~~~v~~~~~s~~  224 (343)
T 2xzm_R          147 ILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGR--LKVWNTNFQIRYTFKAHESNVNHLSISPN  224 (343)
T ss_dssp             SSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSE--EEEEETTTEEEEEEECCSSCEEEEEECTT
T ss_pred             ccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCE--EEEEcCCCceeEEEcCccccceEEEECCC
Confidence            974321100          011111111          11222222222  2222221   2234579999999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCC-CEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeee-------hh
Q 043707          247 QGLLYSGSWDKTLKVWRISD-CKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFL-------AQ  318 (347)
Q Consensus       247 ~~~l~s~s~dg~i~vwdl~~-~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~-------~~  318 (347)
                      +++|++|+.||+|++||++. ..+...+. +...|.+++|+|++.+++++.|+.|++||+..........+       ..
T Consensus       225 g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~  303 (343)
T 2xzm_R          225 GKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAE  303 (343)
T ss_dssp             SSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBT
T ss_pred             CCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhh
Confidence            99999999999999999954 44444443 55679999999999666677899999999975432110000       01


Q ss_pred             hhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          319 VLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       319 ~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      ...+|...|++++|+|++++|++|+.||+
T Consensus       304 ~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~  332 (343)
T 2xzm_R          304 GQKGKNPQCTSLAWNALGKKLFAGFTDGV  332 (343)
T ss_dssp             TBCCSCCCEEEEEECSSSCCEEEEETTSE
T ss_pred             hhcCCCCceEEEEECCCCCeEEEecCCce
Confidence            12368889999999999999999999984

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.97  E-value=5e-29  Score=222.04  Aligned_cols=192  Identities=19%  Similarity=0.334  Sum_probs=165.0

Q ss_pred             eeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEec
Q 043707          115 LIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKV  190 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~  190 (347)
                      .+..+.+|...|.++.+  ++++|++|+.|++|+|||..  +....+.+|...|.+++|+|++.+|++|+.|++|++||+
T Consensus        57 ~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~  136 (319)
T 3frx_A           57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI  136 (319)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred             cceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            47788999999998886  57899999999999999965  456788999999999999999999999999999999999


Q ss_pred             CCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC------CCEEEEEeCCCcEEEEeC
Q 043707          191 SRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE------QGLLYSGSWDKTLKVWRI  264 (347)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~------~~~l~s~s~dg~i~vwdl  264 (347)
                      +....                                 ....+|...|.+++|.|.      +..|++++.|++|++||+
T Consensus       137 ~~~~~---------------------------------~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~  183 (319)
T 3frx_A          137 KGQCL---------------------------------ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL  183 (319)
T ss_dssp             TSCEE---------------------------------EEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEET
T ss_pred             CCCeE---------------------------------EEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEEC
Confidence            64311                                 111258999999999985      458999999999999999


Q ss_pred             CCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          265 SDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       265 ~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                      ++++....+.+|...|.+++|+|++ +|++|+.||.|++||++...      ....+. +...|.+++|+|++.+|++++
T Consensus       184 ~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~------~~~~~~-~~~~v~~~~~sp~~~~la~~~  256 (319)
T 3frx_A          184 NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK------AMYTLS-AQDEVFSLAFSPNRYWLAAAT  256 (319)
T ss_dssp             TTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE------EEEEEE-CCSCEEEEEECSSSSEEEEEE
T ss_pred             CcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc------EEEEec-CCCcEEEEEEcCCCCEEEEEc
Confidence            9999999999999999999999998 99999999999999998543      233333 346899999999999999988


Q ss_pred             CCC
Q 043707          344 SDG  346 (347)
Q Consensus       344 ~DG  346 (347)
                      .++
T Consensus       257 ~~~  259 (319)
T 3frx_A          257 ATG  259 (319)
T ss_dssp             TTE
T ss_pred             CCC
Confidence            764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.97  E-value=2.4e-29  Score=241.19  Aligned_cols=206  Identities=21%  Similarity=0.406  Sum_probs=177.2

Q ss_pred             CCCCCCcccccc------------cceeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC-CcceeeecCCCCee
Q 043707          101 PYSPNENLLSSC------------NGLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL-KEFSGFKSNSGLVK  165 (347)
Q Consensus       101 ~~~p~~~~~~~~------------~~~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~-~~~~~~~~h~~~V~  165 (347)
                      .|+|++..++..            ..++..+.+|...|.++++  ++++|++|+.|+.|++||.. +.+..+.+|...|.
T Consensus       351 ~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~  430 (577)
T 2ymu_A          351 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVW  430 (577)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEE
T ss_pred             EECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeE
Confidence            567777665432            2367778889999999886  57899999999999999954 45677889999999


Q ss_pred             EEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC
Q 043707          166 AIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA  245 (347)
Q Consensus       166 ~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~  245 (347)
                      +++|+|++++|++++.|++|++||..... ..                                ...+|...|.+++|+|
T Consensus       431 ~~~~s~d~~~l~~~~~d~~v~~w~~~~~~-~~--------------------------------~~~~~~~~v~~~~~sp  477 (577)
T 2ymu_A          431 GVAFSPDDQTIASASDDKTVKLWNRNGQL-LQ--------------------------------TLTGHSSSVRGVAFSP  477 (577)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTSCE-EE--------------------------------EEECCSSCEEEEEECT
T ss_pred             EEEECCCCCEEEEEcCCCEEEEEECCCCE-EE--------------------------------EEcCCCCCEEEEEEcC
Confidence            99999999999999999999999974321 11                                1125899999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccC
Q 043707          246 EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQE  324 (347)
Q Consensus       246 ~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~  324 (347)
                      ++++|++++.|++|++||. +++++..+.+|...|++++|+|++ +|++++.||.|+|||..  ++     ++..+.+|.
T Consensus       478 d~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~--~~-----~~~~~~~h~  549 (577)
T 2ymu_A          478 DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQ-----LLQTLTGHS  549 (577)
T ss_dssp             TSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT--SC-----EEEEEECCS
T ss_pred             CCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC--CC-----EEEEEcCCC
Confidence            9999999999999999995 688999999999999999999998 89999999999999964  22     567788999


Q ss_pred             CcEEEEEEccCCCEEEEecCCCC
Q 043707          325 NAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       325 ~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      ..|++|+|+||+++|++++.||+
T Consensus       550 ~~v~~~~fs~dg~~l~s~~~D~~  572 (577)
T 2ymu_A          550 SSVWGVAFSPDGQTIASASSDKT  572 (577)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSC
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCE
Confidence            99999999999999999999985

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=5.7e-30  Score=237.82  Aligned_cols=199  Identities=15%  Similarity=0.167  Sum_probs=163.0

Q ss_pred             eeEeeeeccccEEEEeec---CCEEEEecCCCcEEEEeCCCc----ceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEE
Q 043707          115 LIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLKE----FSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIR  186 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~~~----~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~  186 (347)
                      +......|+..|+||+|+   +++||+|+.||.|+|||....    ...+.+|.+.|.+|+|+| ++++|++|+.||+|+
T Consensus       111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~  190 (435)
T 4e54_B          111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR  190 (435)
T ss_dssp             SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred             ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence            455677899999999985   469999999999999996422    344568999999999998 788999999999999


Q ss_pred             EEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 043707          187 IWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD  266 (347)
Q Consensus       187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~  266 (347)
                      +||++++........                              ..+...+.+++|++++.+|++|+.||.|++||++ 
T Consensus       191 iwd~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-  239 (435)
T 4e54_B          191 LQDFKGNILRVFASS------------------------------DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-  239 (435)
T ss_dssp             EEETTSCEEEEEECC------------------------------SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-
T ss_pred             EeeccCCceeEEecc------------------------------CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-
Confidence            999976532111100                              0144567899999999999999999999999986 


Q ss_pred             CEEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707          267 CKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       267 ~~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      ++++..+.+|...|.+++|+|++  +|++|+.|+.|+|||++....   ........+|...|++|+|+|++.+|++|+.
T Consensus       240 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~---~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~  316 (435)
T 4e54_B          240 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRG---KASFLYSLPHRHPVNAACFSPDGARLLTTDQ  316 (435)
T ss_dssp             SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCS---SSCCSBCCBCSSCEEECCBCTTSSEEEEEES
T ss_pred             cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccc---cceEEEeeeccccccceeECCCCCeeEEEcC
Confidence            56777889999999999999986  788999999999999985432   1123344679999999999999999999999


Q ss_pred             CCC
Q 043707          345 DGL  347 (347)
Q Consensus       345 DG~  347 (347)
                      ||+
T Consensus       317 D~~  319 (435)
T 4e54_B          317 KSE  319 (435)
T ss_dssp             SSC
T ss_pred             CCE
Confidence            984

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=7.4e-29  Score=221.23  Aligned_cols=231  Identities=14%  Similarity=0.145  Sum_probs=163.7

Q ss_pred             EeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCC------cceeeecCCCCeeEEEEeC--CCCEEEEEeCCCcEE
Q 043707          117 GSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK------EFSGFKSNSGLVKAIIITG--DSNKIFTGHQDGKIR  186 (347)
Q Consensus       117 ~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~------~~~~~~~h~~~V~~l~~sp--~~~~l~s~~~Dg~I~  186 (347)
                      ..+.+|++.|+++++  ++++|++|+.||.|++||...      ....+.+|...|.+++|+|  ++++|++|+.||.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            356789999999997  477999999999999999652      3556778999999999999  589999999999999


Q ss_pred             EEecCCCCCce-------eeeec----------cccc--ccceEEeccCCCeE-EEEeecceeee--------------e
Q 043707          187 IWKVSRKNPSV-------HKRVG----------SLPT--FKDYVKSSVNPKNY-VEVRRNRNVLK--------------I  232 (347)
Q Consensus       187 vwd~~~~~~~~-------~~~~~----------~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~--------------~  232 (347)
                      +||++.++...       .....          ..+.  ...++....+.... +++........              .
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            99998764211       11111          1111  11111111111111 11111111100              0


Q ss_pred             ecCCCeeEEEEcCC---CCEEEEEeCCCcEEEEeCCCCEE--EEEEecCCCcEEEEEeCCCC-----EEEEEeCCCcEEE
Q 043707          233 RHYDAVSCLSLNAE---QGLLYSGSWDKTLKVWRISDCKC--LESINAHDDAINSVVAGFDS-----LVFTGSADGTVKV  302 (347)
Q Consensus       233 ~h~~~V~~l~~~~~---~~~l~s~s~dg~i~vwdl~~~~~--~~~~~~h~~~v~~i~~~~~~-----~l~s~~~dg~I~v  302 (347)
                      .|...+.+++|+|+   +.+|++++.|+.+.+|+...++.  +..+.+|...|.+++|+|++     +|++++.||.|++
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i  244 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI  244 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred             CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence            35566777777775   67777777777776666665543  67778899999999999995     8999999999999


Q ss_pred             EEcccCCc----------------------------------------cceeeehhhhhccCCcEEEEEEccCCCEEEEe
Q 043707          303 WRRELQGK----------------------------------------GTKHFLAQVLLKQENAITALAVNQESAVVYCG  342 (347)
Q Consensus       303 wd~~~~~~----------------------------------------~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sg  342 (347)
                      ||++....                                        .....+...+.+|...|++++|+|++++|++|
T Consensus       245 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~  324 (351)
T 3f3f_A          245 FKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSA  324 (351)
T ss_dssp             EEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEE
T ss_pred             EeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEe
Confidence            99985321                                        01123556677899999999999999999999


Q ss_pred             cCCCC
Q 043707          343 SSDGL  347 (347)
Q Consensus       343 s~DG~  347 (347)
                      +.||.
T Consensus       325 ~~dg~  329 (351)
T 3f3f_A          325 GDDGK  329 (351)
T ss_dssp             ETTSC
T ss_pred             cCCCc
Confidence            99984

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=1.3e-29  Score=230.23  Aligned_cols=201  Identities=12%  Similarity=0.049  Sum_probs=162.5

Q ss_pred             ceeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCCC-----cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEE
Q 043707          114 GLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLK-----EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIR  186 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~~-----~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~  186 (347)
                      ..+..+.+|.+.|.+++++  +++|++|+.||.|++||...     ....+..|...|.+++|+|++++|++|+.|+.|+
T Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  125 (377)
T 3dwl_C           46 KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVIS  125 (377)
T ss_dssp             EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEE
T ss_pred             EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEE
Confidence            3567788899999999875  67999999999999999653     3556778999999999999999999999999999


Q ss_pred             EEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeee-cCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 043707          187 IWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIR-HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS  265 (347)
Q Consensus       187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~  265 (347)
                      +||++.++......                             .... |...|.+++|+|++.+|++++.|++|++||++
T Consensus       126 iwd~~~~~~~~~~~-----------------------------~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  176 (377)
T 3dwl_C          126 VCYFEQENDWWVSK-----------------------------HLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAY  176 (377)
T ss_dssp             ECCC-----CCCCE-----------------------------EECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEEC
T ss_pred             EEEECCcccceeee-----------------------------EeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEE
Confidence            99998775210000                             0113 88999999999999999999999999999985


Q ss_pred             ------------------CCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCc
Q 043707          266 ------------------DCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENA  326 (347)
Q Consensus       266 ------------------~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~  326 (347)
                                        .++++..+ .|...|.+++|+|++ +|++++.||.|++||++....  .......+..|...
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~  253 (377)
T 3dwl_C          177 VRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ--PPRALITVKLSQLP  253 (377)
T ss_dssp             CSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS--CEEECCCEECSSSC
T ss_pred             ecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC--cceeeEeecCCCCc
Confidence                              35677777 899999999999998 899999999999999986542  12236778889999


Q ss_pred             EEEEEEccCCCEEEEecCCC
Q 043707          327 ITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       327 V~~l~~~p~~~~l~sgs~DG  346 (347)
                      |++++|+|++++|++|+.|+
T Consensus       254 v~~~~~s~~~~~l~~~~~~~  273 (377)
T 3dwl_C          254 LRSLLWANESAIVAAGYNYS  273 (377)
T ss_dssp             EEEEEEEETTEEEEEESSSS
T ss_pred             eEEEEEcCCCCEEEEEcCCc
Confidence            99999999999999998776

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1e-28  Score=223.59  Aligned_cols=201  Identities=21%  Similarity=0.211  Sum_probs=169.1

Q ss_pred             eeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCC----CcceeeecCCCCeeEEEEeCC--CCEEEEEeCCCcEE
Q 043707          115 LIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL----KEFSGFKSNSGLVKAIIITGD--SNKIFTGHQDGKIR  186 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~----~~~~~~~~h~~~V~~l~~sp~--~~~l~s~~~Dg~I~  186 (347)
                      ++..+.+|.+.|++++++  +++|++|+.||.|+|||..    +....+.+|...|.+++|+++  +++|++|+.||.|+
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~   82 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   82 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence            567889999999999875  7899999999999999964    335677889999999999986  89999999999999


Q ss_pred             EEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC--CCEEEEEeCCCcEEEEeC
Q 043707          187 IWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE--QGLLYSGSWDKTLKVWRI  264 (347)
Q Consensus       187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~dg~i~vwdl  264 (347)
                      +||+.+++......                              ...|...|.+++|+|+  +.+|++++.|+.|++||+
T Consensus        83 iwd~~~~~~~~~~~------------------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~  132 (379)
T 3jrp_A           83 IWKEENGRWSQIAV------------------------------HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF  132 (379)
T ss_dssp             EEEEETTEEEEEEE------------------------------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEC
T ss_pred             EEEcCCCceeEeee------------------------------ecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEec
Confidence            99998764211111                              1248899999999999  999999999999999999


Q ss_pred             CCCE--EEEEEecCCCcEEEEEeCC-------------CC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEE
Q 043707          265 SDCK--CLESINAHDDAINSVVAGF-------------DS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAIT  328 (347)
Q Consensus       265 ~~~~--~~~~~~~h~~~v~~i~~~~-------------~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~  328 (347)
                      ++.+  ....+..|...|.+++|+|             ++ +|++++.||.|++||++....  ...+...+.+|...|+
T Consensus       133 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~h~~~v~  210 (379)
T 3jrp_A          133 KENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ--TYVLESTLEGHSDWVR  210 (379)
T ss_dssp             CTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT--EEEEEEEECCCSSCEE
T ss_pred             CCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc--ceeeEEEEecccCcEe
Confidence            8873  4456778999999999999             45 999999999999999985543  3345567778999999


Q ss_pred             EEEEccC---CCEEEEecCCCC
Q 043707          329 ALAVNQE---SAVVYCGSSDGL  347 (347)
Q Consensus       329 ~l~~~p~---~~~l~sgs~DG~  347 (347)
                      +++|+|+   +.+|++++.||.
T Consensus       211 ~~~~sp~~~~~~~l~s~~~dg~  232 (379)
T 3jrp_A          211 DVAWSPTVLLRSYLASVSQDRT  232 (379)
T ss_dssp             EEEECCCCSSSEEEEEEETTSC
T ss_pred             EEEECCCCCCCCeEEEEeCCCE
Confidence            9999999   899999999984

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.7e-28  Score=220.86  Aligned_cols=202  Identities=16%  Similarity=0.214  Sum_probs=169.1

Q ss_pred             eeEeeeeccccEEEEeec----CCEEEEecCCCcEEEEeCCC----cceeeecCCCCeeEEEEeCC--CCEEEEEeCCCc
Q 043707          115 LIGSIVRKEGHIYSLAAS----GDLLYTGSDSKNIRVWKNLK----EFSGFKSNSGLVKAIIITGD--SNKIFTGHQDGK  184 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~~----~~~l~tg~~dg~I~vwd~~~----~~~~~~~h~~~V~~l~~sp~--~~~l~s~~~Dg~  184 (347)
                      .+..+.+|.+.|+++.++    +++|++|+.||.|++||...    ....+..|...|.+++|+|+  +.+|++++.||.
T Consensus        47 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~  126 (379)
T 3jrp_A           47 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK  126 (379)
T ss_dssp             EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSE
T ss_pred             eeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCc
Confidence            556788899999999975    78999999999999999543    45667789999999999998  999999999999


Q ss_pred             EEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC-------------CCCEEE
Q 043707          185 IRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA-------------EQGLLY  251 (347)
Q Consensus       185 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-------------~~~~l~  251 (347)
                      |++||++.........                              ...|...|.+++|+|             ++.+|+
T Consensus       127 i~v~d~~~~~~~~~~~------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~  176 (379)
T 3jrp_A          127 VSVVEFKENGTTSPII------------------------------IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFV  176 (379)
T ss_dssp             EEEEECCTTSCCCEEE------------------------------EECCTTCEEEEEECCCC----------CTTCEEE
T ss_pred             EEEEecCCCCceeeEE------------------------------ecCCCCceEEEEEcCccccccccccCCCCCCEEE
Confidence            9999998774322221                              124889999999999             699999


Q ss_pred             EEeCCCcEEEEeCCCCE----EEEEEecCCCcEEEEEeCCC---C-EEEEEeCCCcEEEEEcccCCccceeeehhhhhcc
Q 043707          252 SGSWDKTLKVWRISDCK----CLESINAHDDAINSVVAGFD---S-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQ  323 (347)
Q Consensus       252 s~s~dg~i~vwdl~~~~----~~~~~~~h~~~v~~i~~~~~---~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h  323 (347)
                      +++.||.|++||+++++    ++..+.+|...|.+++|+|+   + +|++++.||.|++||++..... ..........|
T Consensus       177 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~  255 (379)
T 3jrp_A          177 TGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP-WKKTLLKEEKF  255 (379)
T ss_dssp             EEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC-CEEEESSSSCC
T ss_pred             EEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcc-ceeeeeccccC
Confidence            99999999999997653    56778899999999999998   6 8999999999999999865321 11223334558


Q ss_pred             CCcEEEEEEccCCCEEEEecCCCC
Q 043707          324 ENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       324 ~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      ...|++++|+|++++|++++.||.
T Consensus       256 ~~~v~~~~~s~~g~~l~~~~~dg~  279 (379)
T 3jrp_A          256 PDVLWRASWSLSGNVLALSGGDNK  279 (379)
T ss_dssp             SSCEEEEEECSSSCCEEEEESSSS
T ss_pred             CCcEEEEEEcCCCCEEEEecCCCc
Confidence            889999999999999999999984

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.96  E-value=5.4e-28  Score=234.01  Aligned_cols=213  Identities=15%  Similarity=0.159  Sum_probs=165.1

Q ss_pred             EEeecCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeec---
Q 043707          128 SLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVG---  202 (347)
Q Consensus       128 ~l~~~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~---  202 (347)
                      ++.++|++|++++ ++.|+||+..  +....+.+|...|.+++|+|+|++|++|+.||+|+|||+.+++........   
T Consensus        25 ~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~  103 (611)
T 1nr0_A           25 GNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFS  103 (611)
T ss_dssp             EECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSS
T ss_pred             eeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccC
Confidence            4556788999998 5699999964  457788999999999999999999999999999999999765433222211   


Q ss_pred             -------ccccccceEEeccCCC--eEEEEeec--ceeeeeecCCCeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCEEE
Q 043707          203 -------SLPTFKDYVKSSVNPK--NYVEVRRN--RNVLKIRHYDAVSCLSLNAEQG-LLYSGSWDKTLKVWRISDCKCL  270 (347)
Q Consensus       203 -------~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~dg~i~vwdl~~~~~~  270 (347)
                             ..|....++....+..  ..+.++..  ....+.+|...|.+++|+|++. .|++|+.|++|++||.++++++
T Consensus       104 ~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~  183 (611)
T 1nr0_A          104 GPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK  183 (611)
T ss_dssp             SCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEE
T ss_pred             CceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEe
Confidence                   1122222222222111  12222221  1123457999999999999986 6999999999999999999999


Q ss_pred             EEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhh-------hccCCcEEEEEEccCCCEEEEe
Q 043707          271 ESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVL-------LKQENAITALAVNQESAVVYCG  342 (347)
Q Consensus       271 ~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~-------~~h~~~V~~l~~~p~~~~l~sg  342 (347)
                      ..+.+|...|.+++|+|++ +|++|+.|++|++||+..+..      ...+       .+|...|++++|+|++++|++|
T Consensus       184 ~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~------~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~  257 (611)
T 1nr0_A          184 STFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK------TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA  257 (611)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE------EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEE
T ss_pred             eeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcE------eeeeccccccccccCCCEEEEEECCCCCEEEEE
Confidence            9999999999999999998 999999999999999875432      2222       2799999999999999999999


Q ss_pred             cCCCC
Q 043707          343 SSDGL  347 (347)
Q Consensus       343 s~DG~  347 (347)
                      +.||+
T Consensus       258 s~D~~  262 (611)
T 1nr0_A          258 SADKT  262 (611)
T ss_dssp             ETTSE
T ss_pred             eCCCe
Confidence            99984

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.96  E-value=2.1e-28  Score=240.36  Aligned_cols=195  Identities=22%  Similarity=0.390  Sum_probs=166.7

Q ss_pred             eeEeeeeccccEEEEeec---CCEEEEecCCCcEEEEeCCC-------cceeeecCCCCeeEEEEeCCCCEEEEEeCCCc
Q 043707          115 LIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLK-------EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGK  184 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~~-------~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~  184 (347)
                      +...+.+|.+.|++++++   +++|++|+.||+|++|+...       ....+.+|...|.+++|+|++++|++|+.||+
T Consensus       374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~  453 (694)
T 3dm0_A          374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE  453 (694)
T ss_dssp             EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence            456789999999999975   46999999999999999643       23567899999999999999999999999999


Q ss_pred             EEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 043707          185 IRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI  264 (347)
Q Consensus       185 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl  264 (347)
                      |+|||+.++....                                ...+|...|.+++|+|++.+|++++.|++|+|||+
T Consensus       454 v~vwd~~~~~~~~--------------------------------~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~  501 (694)
T 3dm0_A          454 LRLWDLAAGVSTR--------------------------------RFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT  501 (694)
T ss_dssp             EEEEETTTTEEEE--------------------------------EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred             EEEEECCCCccee--------------------------------EEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEC
Confidence            9999998764221                                12259999999999999999999999999999998


Q ss_pred             CCCEEEEEE---ecCCCcEEEEEeCCCC---EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCE
Q 043707          265 SDCKCLESI---NAHDDAINSVVAGFDS---LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAV  338 (347)
Q Consensus       265 ~~~~~~~~~---~~h~~~v~~i~~~~~~---~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~  338 (347)
                      .........   .+|...|.+++|+|++   .|++++.|++|++||++...      +...+.+|...|++++|+|++++
T Consensus       502 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~------~~~~~~~h~~~v~~v~~spdg~~  575 (694)
T 3dm0_A          502 LGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK------LRSTLAGHTGYVSTVAVSPDGSL  575 (694)
T ss_dssp             TSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC------EEEEECCCSSCEEEEEECTTSSE
T ss_pred             CCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc------EEEEEcCCCCCEEEEEEeCCCCE
Confidence            765443332   3688899999999985   79999999999999997443      45677889999999999999999


Q ss_pred             EEEecCCCC
Q 043707          339 VYCGSSDGL  347 (347)
Q Consensus       339 l~sgs~DG~  347 (347)
                      |++|+.||+
T Consensus       576 l~sg~~Dg~  584 (694)
T 3dm0_A          576 CASGGKDGV  584 (694)
T ss_dssp             EEEEETTSB
T ss_pred             EEEEeCCCe
Confidence            999999984

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.96  E-value=2.1e-27  Score=210.42  Aligned_cols=228  Identities=20%  Similarity=0.280  Sum_probs=174.3

Q ss_pred             ceeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707          114 GLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK  189 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd  189 (347)
                      ..+..+.+|...|.++.+  ++++|++|+.||.|++||..  +....+.+|...|.+++|+|++++|++|+.||.|++||
T Consensus        56 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd  135 (312)
T 4ery_A           56 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD  135 (312)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred             ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence            356778889999999987  47799999999999999965  45677889999999999999999999999999999999


Q ss_pred             cCCCCCceeeee--------cccccccceEEeccCCCeEE-EEeecceee--eeecCCCeeEEEEcCCCCEEEEEeCCCc
Q 043707          190 VSRKNPSVHKRV--------GSLPTFKDYVKSSVNPKNYV-EVRRNRNVL--KIRHYDAVSCLSLNAEQGLLYSGSWDKT  258 (347)
Q Consensus       190 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~h~~~V~~l~~~~~~~~l~s~s~dg~  258 (347)
                      +++++.......        ...+....++....+....+ +........  ...+...+.+++|+|++.+|++++.|+.
T Consensus       136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  215 (312)
T 4ery_A          136 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT  215 (312)
T ss_dssp             TTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTE
T ss_pred             CCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCe
Confidence            998764322211        11122222333333332222 222222221  2246678999999999999999999999


Q ss_pred             EEEEeCCCCEEEEEEecCCCcEEEE--Ee-CCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEcc
Q 043707          259 LKVWRISDCKCLESINAHDDAINSV--VA-GFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQ  334 (347)
Q Consensus       259 i~vwdl~~~~~~~~~~~h~~~v~~i--~~-~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p  334 (347)
                      |++||+++++++..+.+|...+.++  .+ .+++ +|++|+.||.|++||++...      +...+.+|...|.+++|+|
T Consensus       216 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~------~~~~~~~h~~~v~~~~~~p  289 (312)
T 4ery_A          216 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE------IVQKLQGHTDVVISTACHP  289 (312)
T ss_dssp             EEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC------EEEEECCCSSCEEEEEECS
T ss_pred             EEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch------hhhhhhccCCcEEEEeecC
Confidence            9999999999999999887654322  33 3444 89999999999999997543      5677889999999999999


Q ss_pred             CCCEEEEec--CCCC
Q 043707          335 ESAVVYCGS--SDGL  347 (347)
Q Consensus       335 ~~~~l~sgs--~DG~  347 (347)
                      ++.+|++++  .||+
T Consensus       290 ~~~~l~s~~~~~d~~  304 (312)
T 4ery_A          290 TENIIASAALENDKT  304 (312)
T ss_dssp             SSSEEEEEECTTTCC
T ss_pred             cCCceEEEEccCCcc
Confidence            999999987  5764

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.96  E-value=5.3e-28  Score=220.94  Aligned_cols=227  Identities=12%  Similarity=0.169  Sum_probs=179.7

Q ss_pred             ceeEeeeeccccEEEEeecCCEEEEecCCCcEEEEeCCC--------cceeeecCCCCeeEEEEeCC----C---CEEEE
Q 043707          114 GLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLK--------EFSGFKSNSGLVKAIIITGD----S---NKIFT  178 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~~--------~~~~~~~h~~~V~~l~~sp~----~---~~l~s  178 (347)
                      .....+.+|.+.|+++++++++|++|+.||.|++|+...        ....+..|...|.+++|+|+    +   ++|++
T Consensus         7 ~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s   86 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT   86 (397)
T ss_dssp             EEEEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             hhhhhhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEE
Confidence            346677899999999999999999999999999999542        46678899999999999999    9   99999


Q ss_pred             EeCCCcEEEEecCCCCC-----ceeee-------------eccc----ccccc-eEEeccCCCe-EEEEee------cce
Q 043707          179 GHQDGKIRIWKVSRKNP-----SVHKR-------------VGSL----PTFKD-YVKSSVNPKN-YVEVRR------NRN  228 (347)
Q Consensus       179 ~~~Dg~I~vwd~~~~~~-----~~~~~-------------~~~~----~~~~~-~~~~~~~~~~-~~~~~~------~~~  228 (347)
                      ++.||.|++||+.+++.     .....             +...    +.... ++....+... ++++..      ...
T Consensus        87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  166 (397)
T 1sq9_A           87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT  166 (397)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred             EcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce
Confidence            99999999999988764     22111             1111    22223 3333333332 233333      222


Q ss_pred             e------ee-------eecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEec---C---CCcEEEEEeCCCC
Q 043707          229 V------LK-------IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA---H---DDAINSVVAGFDS  289 (347)
Q Consensus       229 ~------~~-------~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~---h---~~~v~~i~~~~~~  289 (347)
                      .      ..       ..|...|.+++|+|++ +|++++.||.|++||+++++++..+..   |   ...|.+++|+|++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~  245 (397)
T 1sq9_A          167 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG  245 (397)
T ss_dssp             TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST
T ss_pred             eeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCC
Confidence            2      22       2378899999999999 999999999999999999999999998   9   9999999999987


Q ss_pred             -EEEEEeCC---CcEEEEEcccCCccceeeehhhhhc-------------cCCcEEEEEEccCCCEEEEecCCCC
Q 043707          290 -LVFTGSAD---GTVKVWRRELQGKGTKHFLAQVLLK-------------QENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       290 -~l~s~~~d---g~I~vwd~~~~~~~~~~~~~~~~~~-------------h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                       +|++++.|   +.|++||++...      ....+..             |...|.+++|+|++++|++++.||.
T Consensus       246 ~~l~~~~~d~~~g~i~i~d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  314 (397)
T 1sq9_A          246 SLLAIAHDSNSFGCITLYETEFGE------RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK  314 (397)
T ss_dssp             TEEEEEEEETTEEEEEEEETTTCC------EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE
T ss_pred             CEEEEEecCCCCceEEEEECCCCc------ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCe
Confidence             89999999   999999998543      3445555             8999999999999999999999973

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=6e-29  Score=235.41  Aligned_cols=193  Identities=13%  Similarity=0.152  Sum_probs=160.6

Q ss_pred             EeeeeccccEEEEeecC--------CEEEEecCCCcEEEEeCCCc-------------ceeeecCCCCeeEEEEeCCCCE
Q 043707          117 GSIVRKEGHIYSLAASG--------DLLYTGSDSKNIRVWKNLKE-------------FSGFKSNSGLVKAIIITGDSNK  175 (347)
Q Consensus       117 ~~l~~h~~~V~~l~~~~--------~~l~tg~~dg~I~vwd~~~~-------------~~~~~~h~~~V~~l~~sp~~~~  175 (347)
                      .++.+|.+.|.+++|++        .+||+|+.||+|+|||+...             ...+.+|...|.+++|++++ .
T Consensus       201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~  279 (524)
T 2j04_B          201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-T  279 (524)
T ss_dssp             EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-E
T ss_pred             EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-e
Confidence            34667788999998763        59999999999999996432             23567899999999999864 8


Q ss_pred             EEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEE--EEcCCC-CEEEE
Q 043707          176 IFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCL--SLNAEQ-GLLYS  252 (347)
Q Consensus       176 l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l--~~~~~~-~~l~s  252 (347)
                      |++|+.||+|++||++++......                               ..+|...|.+|  +|++++ .+|++
T Consensus       280 lasgs~DgtV~lWD~~~~~~~~~~-------------------------------~~~H~~~V~sv~~~~s~~g~~~laS  328 (524)
T 2j04_B          280 VVCGFKNGFVAEFDLTDPEVPSFY-------------------------------DQVHDSYILSVSTAYSDFEDTVVST  328 (524)
T ss_dssp             EEEEETTSEEEEEETTBCSSCSEE-------------------------------EECSSSCEEEEEEECCTTSCCEEEE
T ss_pred             EEEEeCCCEEEEEECCCCCCceEE-------------------------------eecccccEEEEEEEcCCCCCeEEEE
Confidence            999999999999999875321111                               12599999999  578887 89999


Q ss_pred             EeCCCcEEEEeCCCCEEEEEEecCCC--cEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEE
Q 043707          253 GSWDKTLKVWRISDCKCLESINAHDD--AINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITA  329 (347)
Q Consensus       253 ~s~dg~i~vwdl~~~~~~~~~~~h~~--~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~  329 (347)
                      ++.|++|+|||+++++++..+.+|..  .|.+++|+|++ .|++++.|++|++||++...      ....+.+|...|++
T Consensus       329 ~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~------~~~~l~gH~~~V~s  402 (524)
T 2j04_B          329 VAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF------AVHPLVSRETTITA  402 (524)
T ss_dssp             EETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT------CCEEEEECSSCEEE
T ss_pred             eccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc------cceeeecCCCceEE
Confidence            99999999999999888777777753  58899999987 88999999999999998543      34567789999999


Q ss_pred             EEEccCCCEEEEecCCCC
Q 043707          330 LAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       330 l~~~p~~~~l~sgs~DG~  347 (347)
                      |+|+|++++|++|+.||+
T Consensus       403 va~Sp~g~~l~Sgs~Dgt  420 (524)
T 2j04_B          403 IGVSRLHPMVLAGSADGS  420 (524)
T ss_dssp             EECCSSCCBCEEEETTTE
T ss_pred             EEeCCCCCeEEEEECCCE
Confidence            999999999999999984

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.96  E-value=4.5e-28  Score=219.36  Aligned_cols=194  Identities=22%  Similarity=0.329  Sum_probs=153.4

Q ss_pred             eccccEEEEee--cCCEEEEecC------CCcEEEEeCCC------cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEE
Q 043707          121 RKEGHIYSLAA--SGDLLYTGSD------SKNIRVWKNLK------EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIR  186 (347)
Q Consensus       121 ~h~~~V~~l~~--~~~~l~tg~~------dg~I~vwd~~~------~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~  186 (347)
                      .|++.|.+++|  +|++|++|+.      |+.|++|+...      .......|...|.+++|+|++ .+++++.||+|+
T Consensus        40 ~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~-~~l~~s~dg~v~  118 (357)
T 4g56_B           40 CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK-GILVASDSGAVE  118 (357)
T ss_dssp             CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTT-EEEEEETTSCEE
T ss_pred             cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCC-CEEEEECCCEEE
Confidence            58889998886  6889999998      77899998432      233456788999999999997 567788999999


Q ss_pred             EEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 043707          187 IWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD  266 (347)
Q Consensus       187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~  266 (347)
                      |||+.+++.......                            ...+|...|++++|+|++++|++|+.|++|++||+++
T Consensus       119 lWd~~~~~~~~~~~~----------------------------~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~  170 (357)
T 4g56_B          119 LWEILEKESLLVNKF----------------------------AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ  170 (357)
T ss_dssp             EC--------CCCCE----------------------------EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             EeeccccceeEEEee----------------------------ccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            999988754322111                            1125899999999999999999999999999999999


Q ss_pred             CEEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCC-CEEEEec
Q 043707          267 CKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQES-AVVYCGS  343 (347)
Q Consensus       267 ~~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~-~~l~sgs  343 (347)
                      ++++..+++|...|.+++|++++  ++++++.|+.|++||++....    ........|...|++++|+|++ .+|++|+
T Consensus       171 ~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~----~~~~~~~~~~~~v~~v~~sp~~~~~la~g~  246 (357)
T 4g56_B          171 KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP----ATRIDFCASDTIPTSVTWHPEKDDTFACGD  246 (357)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC----BCBCCCTTCCSCEEEEEECTTSTTEEEEEE
T ss_pred             CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce----eeeeeeccccccccchhhhhcccceEEEee
Confidence            99999999999999999999875  889999999999999985542    1222344567789999999975 7899999


Q ss_pred             CCCC
Q 043707          344 SDGL  347 (347)
Q Consensus       344 ~DG~  347 (347)
                      .||.
T Consensus       247 ~d~~  250 (357)
T 4g56_B          247 ETGN  250 (357)
T ss_dssp             SSSC
T ss_pred             cccc
Confidence            9874

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.96  E-value=4.5e-28  Score=218.34  Aligned_cols=195  Identities=22%  Similarity=0.350  Sum_probs=153.1

Q ss_pred             ceeEeeeeccccEEEEeec-----CCEEEEecCCCcEEEEeCCC---cc-eeeecCCCCeeEEEEeCCCCEEEEEeCCCc
Q 043707          114 GLIGSIVRKEGHIYSLAAS-----GDLLYTGSDSKNIRVWKNLK---EF-SGFKSNSGLVKAIIITGDSNKIFTGHQDGK  184 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~~-----~~~l~tg~~dg~I~vwd~~~---~~-~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~  184 (347)
                      ..+..+.+|.+.|++++++     |++|++|+.||.|+|||...   .. ..+.+|.+.|.+++|+|++++|++++.||.
T Consensus        30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~  109 (368)
T 3mmy_A           30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT  109 (368)
T ss_dssp             CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence            3467788999999999975     37999999999999999653   23 678889999999999999999999999999


Q ss_pred             EEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEE--cCCCCEEEEEeCCCcEEEE
Q 043707          185 IRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSL--NAEQGLLYSGSWDKTLKVW  262 (347)
Q Consensus       185 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~--~~~~~~l~s~s~dg~i~vw  262 (347)
                      |++||+++++....                                 ..|...|.+++|  ++++.+|++++.||.|++|
T Consensus       110 v~iwd~~~~~~~~~---------------------------------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vw  156 (368)
T 3mmy_A          110 AKMWDLSSNQAIQI---------------------------------AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW  156 (368)
T ss_dssp             EEEEETTTTEEEEE---------------------------------EECSSCEEEEEEEECSSCEEEEEEETTSEEEEE
T ss_pred             EEEEEcCCCCceee---------------------------------ccccCceEEEEEEeCCCCCEEEEccCCCcEEEE
Confidence            99999987753221                                 135555666666  5555556666666666666


Q ss_pred             eCCCCE--------------------------------------------------------------------------
Q 043707          263 RISDCK--------------------------------------------------------------------------  268 (347)
Q Consensus       263 dl~~~~--------------------------------------------------------------------------  268 (347)
                      |+++++                                                                          
T Consensus       157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (368)
T 3mmy_A          157 DTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI  236 (368)
T ss_dssp             CSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET
T ss_pred             ECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC
Confidence            654432                                                                          


Q ss_pred             ----------------EEEEEecCCC------------cEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhh
Q 043707          269 ----------------CLESINAHDD------------AINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQV  319 (347)
Q Consensus       269 ----------------~~~~~~~h~~------------~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~  319 (347)
                                      .+..+..|..            .|.+++|+|++ +|++++.||.|++||++...      ++..
T Consensus       237 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~------~~~~  310 (368)
T 3mmy_A          237 EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDART------KLKT  310 (368)
T ss_dssp             TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTE------EEEE
T ss_pred             CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCc------EEEE
Confidence                            2334444544            69999999998 99999999999999998543      5667


Q ss_pred             hhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          320 LLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       320 ~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      +..|...|++++|+|++++|++|+.||.
T Consensus       311 ~~~~~~~v~~~~~s~~g~~l~~~s~d~~  338 (368)
T 3mmy_A          311 SEQLDQPISACCFNHNGNIFAYASSYDW  338 (368)
T ss_dssp             CCCCSSCEEEEEECTTSSCEEEEECCCS
T ss_pred             ecCCCCCceEEEECCCCCeEEEEecccc
Confidence            7789999999999999999999999873

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.96  E-value=5.8e-29  Score=225.98  Aligned_cols=197  Identities=13%  Similarity=0.117  Sum_probs=156.5

Q ss_pred             eeccccEEEEee--cCCEEEEecCCCcEEEEeCC----CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 043707          120 VRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL----KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRK  193 (347)
Q Consensus       120 ~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~----~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~  193 (347)
                      ..|.+.|+++++  ++++|++|+.|+.|+|||..    +....+.+|...|.+++|+|++++|++|+.||+|++||+.++
T Consensus         8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~   87 (377)
T 3dwl_C            8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD   87 (377)
T ss_dssp             EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-----
T ss_pred             ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Confidence            346677888776  57899999999999999954    456778899999999999999999999999999999999877


Q ss_pred             C-CceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCE---E
Q 043707          194 N-PSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK---C  269 (347)
Q Consensus       194 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~---~  269 (347)
                      + .....                              ...+|...|.+++|+|++.+|++++.|++|++||+++++   .
T Consensus        88 ~~~~~~~------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  137 (377)
T 3dwl_C           88 GTWKQTL------------------------------VLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWV  137 (377)
T ss_dssp             -CCCCEE------------------------------ECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCC
T ss_pred             Cceeeee------------------------------EecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccccee
Confidence            5 11111                              112489999999999999999999999999999999887   4


Q ss_pred             EEEEec-CCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCcc------------ceeeehhhhhccCCcEEEEEEccC
Q 043707          270 LESINA-HDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG------------TKHFLAQVLLKQENAITALAVNQE  335 (347)
Q Consensus       270 ~~~~~~-h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~------------~~~~~~~~~~~h~~~V~~l~~~p~  335 (347)
                      +..+.. |...|.+++|+|++ +|++++.|+.|++||++.....            ....+...+ .|...|++++|+|+
T Consensus       138 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~  216 (377)
T 3dwl_C          138 SKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPS  216 (377)
T ss_dssp             CEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTT
T ss_pred             eeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCC
Confidence            778887 99999999999997 9999999999999999632210            012344555 89999999999999


Q ss_pred             CCEEEEecCCCC
Q 043707          336 SAVVYCGSSDGL  347 (347)
Q Consensus       336 ~~~l~sgs~DG~  347 (347)
                      +++|++++.||+
T Consensus       217 ~~~l~~~~~d~~  228 (377)
T 3dwl_C          217 GNALAYAGHDSS  228 (377)
T ss_dssp             SSCEEEEETTTE
T ss_pred             CCEEEEEeCCCc
Confidence            999999999973

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.96  E-value=1.6e-27  Score=217.24  Aligned_cols=201  Identities=15%  Similarity=0.167  Sum_probs=165.8

Q ss_pred             cceeEeeeeccccEEEEeec--C-CEEEEecCCCcEEEEeCCC--cceee--ecCCCCeeEEEEeC-CCCEEEEEeCCCc
Q 043707          113 NGLIGSIVRKEGHIYSLAAS--G-DLLYTGSDSKNIRVWKNLK--EFSGF--KSNSGLVKAIIITG-DSNKIFTGHQDGK  184 (347)
Q Consensus       113 ~~~i~~l~~h~~~V~~l~~~--~-~~l~tg~~dg~I~vwd~~~--~~~~~--~~h~~~V~~l~~sp-~~~~l~s~~~Dg~  184 (347)
                      ..++..+.+|.+.|++++++  + ++|++|+.||.|+|||...  ....+  .+|...|.+++|+| ++++|++++.||.
T Consensus        63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~  142 (383)
T 3ei3_B           63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA  142 (383)
T ss_dssp             CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred             cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence            34677889999999999975  5 7999999999999999663  33333  36999999999999 7789999999999


Q ss_pred             EEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 043707          185 IRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI  264 (347)
Q Consensus       185 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl  264 (347)
                      |++||++.........                              ...|...|.+++|+|++.+|++++.|+.|++||+
T Consensus       143 i~iwd~~~~~~~~~~~------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~  192 (383)
T 3ei3_B          143 TTLRDFSGSVIQVFAK------------------------------TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL  192 (383)
T ss_dssp             EEEEETTSCEEEEEEC------------------------------CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET
T ss_pred             EEEEECCCCceEEEec------------------------------cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC
Confidence            9999998532111000                              0125688999999999999999999999999999


Q ss_pred             CCCEEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEcc-CCCEEEE
Q 043707          265 SDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQ-ESAVVYC  341 (347)
Q Consensus       265 ~~~~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s  341 (347)
                       +++++..+..|...|.+++|+|++  +|++++.|+.|++||++.....  ..+...+ .|...|++++|+| ++.+|++
T Consensus       193 -~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~-~~~~~v~~~~~s~~~~~~l~~  268 (383)
T 3ei3_B          193 -DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK--NSYIAEM-PHEKPVNAAYFNPTDSTKLLT  268 (383)
T ss_dssp             -TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST--TCEEEEE-ECSSCEEEEEECTTTSCEEEE
T ss_pred             -CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc--cceEEEe-cCCCceEEEEEcCCCCCEEEE
Confidence             578899999999999999999987  7999999999999999863321  1123333 6899999999999 9999999


Q ss_pred             ecCCCC
Q 043707          342 GSSDGL  347 (347)
Q Consensus       342 gs~DG~  347 (347)
                      ++.||.
T Consensus       269 ~~~d~~  274 (383)
T 3ei3_B          269 TDQRNE  274 (383)
T ss_dssp             EESSSE
T ss_pred             EcCCCc
Confidence            999873

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.96  E-value=3.4e-27  Score=213.41  Aligned_cols=221  Identities=17%  Similarity=0.127  Sum_probs=174.5

Q ss_pred             eeeccccEEEEee--cCCEEEEecCCCcEEEEeCCC----cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCC
Q 043707          119 IVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK----EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSR  192 (347)
Q Consensus       119 l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~----~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~  192 (347)
                      +..|++.|+++++  ++++|++|+.|+.|++||...    ....+.+|...|.+++|+|++++|++++.||.|++||+++
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence            3458889988887  577999999999999999543    5677889999999999999999999999999999999987


Q ss_pred             CCCceeee----------ecccccccceEEeccCCCeE-EEEeecc-----eeeeeecCCCeeEEEEcCCCCEEEEEeCC
Q 043707          193 KNPSVHKR----------VGSLPTFKDYVKSSVNPKNY-VEVRRNR-----NVLKIRHYDAVSCLSLNAEQGLLYSGSWD  256 (347)
Q Consensus       193 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~h~~~V~~l~~~~~~~~l~s~s~d  256 (347)
                      ++......          +...+....++....+.... +++....     ......|...|.+++|+|++.+|++++.|
T Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  163 (372)
T 1k8k_C           84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD  163 (372)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC
Confidence            75322211          11122333333333333332 3333332     12224578999999999999999999999


Q ss_pred             CcEEEEeC------------------CCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeeh
Q 043707          257 KTLKVWRI------------------SDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLA  317 (347)
Q Consensus       257 g~i~vwdl------------------~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~  317 (347)
                      |.|++||+                  ..++++..+..|...|.+++|+|++ +|++++.|+.|++||++...      +.
T Consensus       164 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------~~  237 (372)
T 1k8k_C          164 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM------AV  237 (372)
T ss_dssp             SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT------EE
T ss_pred             CCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCc------ee
Confidence            99999995                  4678999999999999999999998 99999999999999998543      45


Q ss_pred             hhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          318 QVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       318 ~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      ..+..|...|++++|+|++.+|++| .||
T Consensus       238 ~~~~~~~~~v~~~~~~~~~~~l~~~-~d~  265 (372)
T 1k8k_C          238 ATLASETLPLLAVTFITESSLVAAG-HDC  265 (372)
T ss_dssp             EEEECSSCCEEEEEEEETTEEEEEE-TTS
T ss_pred             EEEccCCCCeEEEEEecCCCEEEEE-eCC
Confidence            6667888899999999999998888 665

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.96  E-value=2.8e-27  Score=216.87  Aligned_cols=227  Identities=20%  Similarity=0.351  Sum_probs=167.4

Q ss_pred             eeccccEEEEee--cCCEEEEecCCCcEEEEeCCC--cceeeecCC------------------CCeeEEEEeCCCCEEE
Q 043707          120 VRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK--EFSGFKSNS------------------GLVKAIIITGDSNKIF  177 (347)
Q Consensus       120 ~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~--~~~~~~~h~------------------~~V~~l~~sp~~~~l~  177 (347)
                      ..|.+.|.++++  +|++|++|+ ++.++||+...  ....+..|.                  ..|.+++|+|++++|+
T Consensus        61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~  139 (393)
T 1erj_A           61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  139 (393)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence            369999999886  578999987 68999999643  233333332                  2499999999999999


Q ss_pred             EEeCCCcEEEEecCCCCCceeee--------ecccccccceEEeccCCCe-EEEEeecceeeeeecCCCeeEEEEcC-CC
Q 043707          178 TGHQDGKIRIWKVSRKNPSVHKR--------VGSLPTFKDYVKSSVNPKN-YVEVRRNRNVLKIRHYDAVSCLSLNA-EQ  247 (347)
Q Consensus       178 s~~~Dg~I~vwd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~V~~l~~~~-~~  247 (347)
                      +|+.||+|+|||+.+++......        +...+....++....+... ++++..........+...+.+++|+| ++
T Consensus       140 s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~  219 (393)
T 1erj_A          140 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG  219 (393)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTC
T ss_pred             EEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCC
Confidence            99999999999998775432211        1122233333333333322 22223334445556888999999999 89


Q ss_pred             CEEEEEeCCCcEEEEeCCCCEEEEEE-------ecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccc------e
Q 043707          248 GLLYSGSWDKTLKVWRISDCKCLESI-------NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGT------K  313 (347)
Q Consensus       248 ~~l~s~s~dg~i~vwdl~~~~~~~~~-------~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~------~  313 (347)
                      .+|++|+.|++|++||+++++.+..+       .+|...|.+++|+|++ +|++|+.|+.|++||++......      .
T Consensus       220 ~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~  299 (393)
T 1erj_A          220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS  299 (393)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------
T ss_pred             CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCC
Confidence            99999999999999999999888777       5789999999999998 89999999999999997532210      1


Q ss_pred             eeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          314 HFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       314 ~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      ......+.+|...|.+++|+|++.+|++|+.||+
T Consensus       300 ~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~  333 (393)
T 1erj_A          300 GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG  333 (393)
T ss_dssp             -CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE
T ss_pred             CcceEEEecccCcEEEEEECCCCCEEEEEeCCCe
Confidence            1234456789999999999999999999999983

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.96  E-value=6.1e-27  Score=214.05  Aligned_cols=234  Identities=15%  Similarity=0.212  Sum_probs=174.1

Q ss_pred             ceeEeeeeccccEEEEee---cCCEEEEecCCCcEEEEeCCCc--ceee-------------ecCCCCeeEEEEeC-CCC
Q 043707          114 GLIGSIVRKEGHIYSLAA---SGDLLYTGSDSKNIRVWKNLKE--FSGF-------------KSNSGLVKAIIITG-DSN  174 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~---~~~~l~tg~~dg~I~vwd~~~~--~~~~-------------~~h~~~V~~l~~sp-~~~  174 (347)
                      .....+.+|.+.|.++++   ++++|++|+.||.|++||....  ...+             .+|...|.+++|+| +++
T Consensus        34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  113 (408)
T 4a11_B           34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG  113 (408)
T ss_dssp             TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred             cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence            346677889999999997   4679999999999999996532  2222             25999999999999 788


Q ss_pred             EEEEEeCCCcEEEEecCCCCCceeeeecc-------cccc---cceEEeccCCCeE-EEEeecce-eeeeecCCCeeEEE
Q 043707          175 KIFTGHQDGKIRIWKVSRKNPSVHKRVGS-------LPTF---KDYVKSSVNPKNY-VEVRRNRN-VLKIRHYDAVSCLS  242 (347)
Q Consensus       175 ~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~-------~~~~---~~~~~~~~~~~~~-~~~~~~~~-~~~~~h~~~V~~l~  242 (347)
                      +|++++.||.|++||+.+++.........       .+..   ..++....+.... +++..... .....|...|.+++
T Consensus       114 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~  193 (408)
T 4a11_B          114 MFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVS  193 (408)
T ss_dssp             CEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEE
T ss_pred             EEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEE
Confidence            99999999999999999876433322111       1111   1222222222222 22222222 23446899999999


Q ss_pred             EcCCCC-EEEEEeCCCcEEEEeCCCCE-EEEEE---------------ecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEE
Q 043707          243 LNAEQG-LLYSGSWDKTLKVWRISDCK-CLESI---------------NAHDDAINSVVAGFDS-LVFTGSADGTVKVWR  304 (347)
Q Consensus       243 ~~~~~~-~l~s~s~dg~i~vwdl~~~~-~~~~~---------------~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd  304 (347)
                      |+|++. +|++++.||.|++||+++++ ++..+               ..|...|.+++|+|++ +|++++.||.|++||
T Consensus       194 ~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd  273 (408)
T 4a11_B          194 WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN  273 (408)
T ss_dssp             ECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEE
Confidence            999988 69999999999999998765 44554               5788999999999998 899999999999999


Q ss_pred             cccCCcc-----------------------------------------ceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          305 RELQGKG-----------------------------------------TKHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       305 ~~~~~~~-----------------------------------------~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                      ++.....                                         ....+...+.+|...|++++|+|++++|++|+
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  353 (408)
T 4a11_B          274 SSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGS  353 (408)
T ss_dssp             TTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred             CCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEEC
Confidence            9864321                                         01123445567999999999999999999999


Q ss_pred             CCCC
Q 043707          344 SDGL  347 (347)
Q Consensus       344 ~DG~  347 (347)
                      .||.
T Consensus       354 ~dg~  357 (408)
T 4a11_B          354 RDCN  357 (408)
T ss_dssp             TTSC
T ss_pred             CCCe
Confidence            9984

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.96  E-value=5.5e-27  Score=211.99  Aligned_cols=233  Identities=12%  Similarity=0.039  Sum_probs=173.4

Q ss_pred             eeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCCCc----ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707          115 LIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE----FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW  188 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~~~----~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw  188 (347)
                      .+..+.+|.+.|.++.++  +++|++|+.||.|++||....    ...+..|...|.+++|+|++++|++++.||.|++|
T Consensus        44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~  123 (372)
T 1k8k_C           44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC  123 (372)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEE
T ss_pred             eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEE
Confidence            678888999999999874  789999999999999996433    23346788999999999999999999999999999


Q ss_pred             ecCCCCCceee------------eecccccccceEEeccCCCeEE-EEe------------------ecce-eeeeecCC
Q 043707          189 KVSRKNPSVHK------------RVGSLPTFKDYVKSSVNPKNYV-EVR------------------RNRN-VLKIRHYD  236 (347)
Q Consensus       189 d~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~-~~~------------------~~~~-~~~~~h~~  236 (347)
                      |++.+......            .+...+....++....+....+ ++.                  .... .....|..
T Consensus       124 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (372)
T 1k8k_C          124 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG  203 (372)
T ss_dssp             EEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS
T ss_pred             EecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCC
Confidence            99987631111            1111222222333333332222 211                  1122 22336889


Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEccc--CCc----
Q 043707          237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRREL--QGK----  310 (347)
Q Consensus       237 ~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~--~~~----  310 (347)
                      .|.+++|+|++.+|++++.|+.|++||+++++++..+..|...|.+++|+|++.+++++.|+.|++|+++.  +.-    
T Consensus       204 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~  283 (372)
T 1k8k_C          204 WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGG  283 (372)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECC
T ss_pred             eEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEee
Confidence            99999999999999999999999999999999999999999999999999999555555999999999986  210    


Q ss_pred             ----------------------cceeeeh------hhh-hccCCcEEEEEEc-cCC---CEEEEecCCCC
Q 043707          311 ----------------------GTKHFLA------QVL-LKQENAITALAVN-QES---AVVYCGSSDGL  347 (347)
Q Consensus       311 ----------------------~~~~~~~------~~~-~~h~~~V~~l~~~-p~~---~~l~sgs~DG~  347 (347)
                                            .......      ..+ .+|...|++++|. +++   .+|++|+.||+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~  353 (372)
T 1k8k_C          284 RLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGG  353 (372)
T ss_dssp             CCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSE
T ss_pred             ccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCc
Confidence                                  0000000      223 4899999999977 566   99999999984

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.7e-27  Score=220.82  Aligned_cols=234  Identities=18%  Similarity=0.218  Sum_probs=166.9

Q ss_pred             cceeEee-eeccccEEEEeec---CCEEEEecCCCcEEEEeCCC---c--c--eeeecCCCCeeEEEEeCCCCEEEEEeC
Q 043707          113 NGLIGSI-VRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLK---E--F--SGFKSNSGLVKAIIITGDSNKIFTGHQ  181 (347)
Q Consensus       113 ~~~i~~l-~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~~---~--~--~~~~~h~~~V~~l~~sp~~~~l~s~~~  181 (347)
                      ..++..+ .+|.+.|++++++   +++|++|+.||+|+|||...   .  .  .....|.+.|.+++|+|++++|++|+.
T Consensus        52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~  131 (437)
T 3gre_A           52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSK  131 (437)
T ss_dssp             CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred             ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeC
Confidence            4567788 8899999999864   57999999999999999533   1  1  112258999999999999999999999


Q ss_pred             CCcEEEEecC---CCCCceeee------ecccc----------------cccceEEeccCCCe-EEEEeecceee-eee-
Q 043707          182 DGKIRIWKVS---RKNPSVHKR------VGSLP----------------TFKDYVKSSVNPKN-YVEVRRNRNVL-KIR-  233 (347)
Q Consensus       182 Dg~I~vwd~~---~~~~~~~~~------~~~~~----------------~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~-  233 (347)
                      ||.|++||++   .++......      +...+                ....++....+... ++++....... ... 
T Consensus       132 dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  211 (437)
T 3gre_A          132 DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENS  211 (437)
T ss_dssp             TSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             CCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccC
Confidence            9999999995   333221111      00001                11112222222221 11222222222 223 


Q ss_pred             -cCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEe-cCCCcEEEEEeCC----CC-EEEEEeCCCcEEEEEcc
Q 043707          234 -HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN-AHDDAINSVVAGF----DS-LVFTGSADGTVKVWRRE  306 (347)
Q Consensus       234 -h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~-~h~~~v~~i~~~~----~~-~l~s~~~dg~I~vwd~~  306 (347)
                       |...|++++|+|++.+|++|+.||+|++||+++++++..+. .|...|.+++|+|    ++ +|++|+.||.|++||++
T Consensus       212 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~  291 (437)
T 3gre_A          212 PRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV  291 (437)
T ss_dssp             GGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred             CCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC
Confidence             78999999999999999999999999999999999999986 7888999997665    45 89999999999999997


Q ss_pred             cCCccceee------eh------------hhhhc--cCCcEEEEEEccCCCEEEEecCCCC
Q 043707          307 LQGKGTKHF------LA------------QVLLK--QENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       307 ~~~~~~~~~------~~------------~~~~~--h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      .........      ..            ..+.+  |...|++++|+ ++++|++|+.||.
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~  351 (437)
T 3gre_A          292 KGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSS  351 (437)
T ss_dssp             TTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTE
T ss_pred             CCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCe
Confidence            543210000      00            01223  77889999999 7799999999973

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.96  E-value=2.7e-27  Score=217.36  Aligned_cols=198  Identities=14%  Similarity=0.249  Sum_probs=163.4

Q ss_pred             eeEeeeeccccEEEEee---cCCEEEEecCCCcEEEEeCCC---------cceeeecCCCCeeEEEEeCCC-CEEEEEeC
Q 043707          115 LIGSIVRKEGHIYSLAA---SGDLLYTGSDSKNIRVWKNLK---------EFSGFKSNSGLVKAIIITGDS-NKIFTGHQ  181 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~---~~~~l~tg~~dg~I~vwd~~~---------~~~~~~~h~~~V~~l~~sp~~-~~l~s~~~  181 (347)
                      .+..+.+|.+.|+++++   ++++|++|+.||.|+|||...         ....+.+|...|.+++|+|++ ++|++|+.
T Consensus        73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~  152 (402)
T 2aq5_A           73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC  152 (402)
T ss_dssp             TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET
T ss_pred             CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC
Confidence            34567789999999997   467999999999999999543         366788999999999999997 69999999


Q ss_pred             CCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 043707          182 DGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKV  261 (347)
Q Consensus       182 Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~v  261 (347)
                      ||.|++||+++++.......                              ..|...|.+++|+|++.+|++++.||.|++
T Consensus       153 dg~i~iwd~~~~~~~~~~~~------------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  202 (402)
T 2aq5_A          153 DNVILVWDVGTGAAVLTLGP------------------------------DVHPDTIYSVDWSRDGALICTSCRDKRVRV  202 (402)
T ss_dssp             TSCEEEEETTTTEEEEEECT------------------------------TTCCSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred             CCEEEEEECCCCCccEEEec------------------------------CCCCCceEEEEECCCCCEEEEEecCCcEEE
Confidence            99999999987743221100                              148899999999999999999999999999


Q ss_pred             EeCCCCEEEEEE-ecCCCc-EEEEEeCCCC-EEEEE---eCCCcEEEEEcccCCccceeeehhh-hhccCCcEEEEEEcc
Q 043707          262 WRISDCKCLESI-NAHDDA-INSVVAGFDS-LVFTG---SADGTVKVWRRELQGKGTKHFLAQV-LLKQENAITALAVNQ  334 (347)
Q Consensus       262 wdl~~~~~~~~~-~~h~~~-v~~i~~~~~~-~l~s~---~~dg~I~vwd~~~~~~~~~~~~~~~-~~~h~~~V~~l~~~p  334 (347)
                      ||+++++.+..+ ..|.+. +.++.|+|++ +|++|   +.|+.|++||++....     +... ...|...|.+++|+|
T Consensus       203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~s~  277 (402)
T 2aq5_A          203 IEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE-----PLSLQELDTSSGVLLPFFDP  277 (402)
T ss_dssp             EETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS-----CSEEEECCCCSSCEEEEEET
T ss_pred             EeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC-----CceEEeccCCCceeEEEEcC
Confidence            999999999998 788776 8999999998 66677   6999999999986443     1111 224677899999999


Q ss_pred             CCCEEEE-ecCCCC
Q 043707          335 ESAVVYC-GSSDGL  347 (347)
Q Consensus       335 ~~~~l~s-gs~DG~  347 (347)
                      ++++|++ |+.||.
T Consensus       278 ~~~~l~~~g~~dg~  291 (402)
T 2aq5_A          278 DTNIVYLCGKGDSS  291 (402)
T ss_dssp             TTTEEEEEETTCSC
T ss_pred             CCCEEEEEEcCCCe
Confidence            9999864 556874

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.96  E-value=3.7e-27  Score=216.48  Aligned_cols=212  Identities=17%  Similarity=0.290  Sum_probs=176.1

Q ss_pred             CCCCCCCCcccccc-------------cceeEeeeeccccEEEEeecCCEEEEecCCCcEEEEeCC---CcceeeecCCC
Q 043707           99 MPPYSPNENLLSSC-------------NGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNL---KEFSGFKSNSG  162 (347)
Q Consensus        99 ~~~~~p~~~~~~~~-------------~~~i~~l~~h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~---~~~~~~~~h~~  162 (347)
                      ...|+|++..++..             ...+..+.+|.+.|.++.+++++|++|+.||.|++||..   .....+.+|.+
T Consensus       139 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  218 (401)
T 4aez_A          139 SVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSS  218 (401)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS
T ss_pred             EEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCC
Confidence            33678888765443             236777889999999999999999999999999999965   34667889999


Q ss_pred             CeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEE
Q 043707          163 LVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLS  242 (347)
Q Consensus       163 ~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  242 (347)
                      .|.+++|+|++++|++|+.||.|++||+++++....                                ...|...|.+++
T Consensus       219 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~--------------------------------~~~~~~~v~~~~  266 (401)
T 4aez_A          219 EVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT--------------------------------KTNHNAAVKAVA  266 (401)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEE--------------------------------ECCCSSCCCEEE
T ss_pred             CeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEE--------------------------------ecCCcceEEEEE
Confidence            999999999999999999999999999987643221                                114889999999


Q ss_pred             EcCCC-CEEEEEe--CCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEE--EeCCCcEEEEEcccCCccceeee
Q 043707          243 LNAEQ-GLLYSGS--WDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFT--GSADGTVKVWRRELQGKGTKHFL  316 (347)
Q Consensus       243 ~~~~~-~~l~s~s--~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s--~~~dg~I~vwd~~~~~~~~~~~~  316 (347)
                      |+|++ .++++++  .|+.|++||+++++++..+. +...|.+++|+|++ +|++  |+.||.|++||+.....    ..
T Consensus       267 ~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~----~~  341 (401)
T 4aez_A          267 WCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL----TK  341 (401)
T ss_dssp             ECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEE----EE
T ss_pred             ECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccc----ee
Confidence            99975 5666665  79999999999999999887 66789999999998 6666  44899999999975322    23


Q ss_pred             hhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          317 AQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       317 ~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      ...+.+|...|++++|+|++++|++++.||.
T Consensus       342 ~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~  372 (401)
T 4aez_A          342 QVDIPAHDTRVLYSALSPDGRILSTAASDEN  372 (401)
T ss_dssp             EEEEECCSSCCCEEEECTTSSEEEEECTTSE
T ss_pred             EEEecCCCCCEEEEEECCCCCEEEEEeCCCc
Confidence            3456789999999999999999999999984

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=5.3e-28  Score=221.68  Aligned_cols=219  Identities=8%  Similarity=0.087  Sum_probs=145.1

Q ss_pred             eEeeeeccccEEEEee----------cCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCC-CEEEEEeCC
Q 043707          116 IGSIVRKEGHIYSLAA----------SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDS-NKIFTGHQD  182 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~----------~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~-~~l~s~~~D  182 (347)
                      +..+.+|++.|.+++|          ++++|++|+.|++|+|||..  .....+..|...|.+++|+|++ .+|++|+.|
T Consensus       129 ~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d  208 (393)
T 4gq1_A          129 LGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERN  208 (393)
T ss_dssp             ECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETT
T ss_pred             ecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCC
Confidence            4457789999999997          46799999999999999953  4566777899999999999976 479999999


Q ss_pred             CcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEc-CCCCEEEEEeCCCcEEE
Q 043707          183 GKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLN-AEQGLLYSGSWDKTLKV  261 (347)
Q Consensus       183 g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~~~l~s~s~dg~i~v  261 (347)
                      |+|++||+++++................+......       ........+|...|.++.|. +++..|++++.|+++++
T Consensus       209 ~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~-------~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~v  281 (393)
T 4gq1_A          209 GNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP-------LVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLR  281 (393)
T ss_dssp             SEEEEEETTCCC----------CSCCCSEEEESGG-------GC------CCSSSCSEEEEETTTTCEEEEECTTSEEEE
T ss_pred             CEEEEEECCCCcccccccccCCcccceEEeccccc-------ceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEE
Confidence            99999999987643222111100000000000000       00011123588899999987 78999999999999999


Q ss_pred             EeCCCCEEEEEEecCCCcEEEEE------------------eCC--CC-EEEEEeCCCcEEEEEcccCCccceeeehhhh
Q 043707          262 WRISDCKCLESINAHDDAINSVV------------------AGF--DS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVL  320 (347)
Q Consensus       262 wdl~~~~~~~~~~~h~~~v~~i~------------------~~~--~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~  320 (347)
                      ||+..++....+..|...+..+.                  +++  ++ ++++|+.||.|++||+..+.      ....+
T Consensus       282 wd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~------~~~~~  355 (393)
T 4gq1_A          282 WNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD------SNSIP  355 (393)
T ss_dssp             EEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT------CCEEE
T ss_pred             EECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc------EEEEe
Confidence            99998877766665554444333                  332  23 56778899999999997543      34456


Q ss_pred             hccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          321 LKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       321 ~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      ..|..+|++|+|+|+|++||+++.||+
T Consensus       356 ~~~~~~V~svafspdG~~LA~as~~Gv  382 (393)
T 4gq1_A          356 IQLGMPIVDFCWHQDGSHLAIATEGSV  382 (393)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEESSEE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence            678889999999999999999999873

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=4.1e-27  Score=207.64  Aligned_cols=192  Identities=21%  Similarity=0.311  Sum_probs=167.4

Q ss_pred             eeEeeeeccccEEEEeecCCEEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCC
Q 043707          115 LIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRK  193 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~  193 (347)
                      .+..+.+|...|.++.+++++|++|+.||.|++||..+....+..|...|.+++|.| ++++|++++.||.|++||....
T Consensus        96 ~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  175 (313)
T 3odt_A           96 PLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKV  175 (313)
T ss_dssp             C-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE
T ss_pred             cccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCce
Confidence            466778899999999999999999999999999997778888999999999999998 8999999999999999993221


Q ss_pred             CCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEE
Q 043707          194 NPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI  273 (347)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~  273 (347)
                        ....                               ...|...|.+++|+|++. +++++.||.|++||+++++++..+
T Consensus       176 --~~~~-------------------------------~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~  221 (313)
T 3odt_A          176 --IKTF-------------------------------SGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTY  221 (313)
T ss_dssp             --EEEE-------------------------------CSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEE
T ss_pred             --EEEE-------------------------------eccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhh
Confidence              1000                               112888999999999987 999999999999999999999999


Q ss_pred             ecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          274 NAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       274 ~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      ..|...|.+++|+|++.|++++.||.|++||++...      +...+..|...|++++|+|+++ +++++.||.
T Consensus       222 ~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~------~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~  288 (313)
T 3odt_A          222 EGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGS------LKQVITLPAISIWSVDCMSNGD-IIVGSSDNL  288 (313)
T ss_dssp             ECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCC------EEEEEECSSSCEEEEEECTTSC-EEEEETTSC
T ss_pred             hcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCc------eeEEEeccCceEEEEEEccCCC-EEEEeCCCc
Confidence            999999999999999999999999999999998543      4666778888999999999998 556888874

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=1.1e-27  Score=217.32  Aligned_cols=183  Identities=14%  Similarity=0.130  Sum_probs=146.2

Q ss_pred             EEEeecCCEEE--EecCCCcEEEEeCCCc--ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeec
Q 043707          127 YSLAASGDLLY--TGSDSKNIRVWKNLKE--FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVG  202 (347)
Q Consensus       127 ~~l~~~~~~l~--tg~~dg~I~vwd~~~~--~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~  202 (347)
                      .+++++|++|+  +++.|++|+|||....  ...+ .|.+.|.+++|+|+|++|++++.| .+++|+..+++......  
T Consensus       139 v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~-~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~--  214 (365)
T 4h5i_A          139 VYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI-ETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKT--  214 (365)
T ss_dssp             EEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE-ECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEEC--
T ss_pred             EEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe-CCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeee--
Confidence            44556788765  4557999999996643  3334 477889999999999999999855 56667666654322211  


Q ss_pred             ccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCC----cEEEEeCCCCEE----EEEEe
Q 043707          203 SLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDK----TLKVWRISDCKC----LESIN  274 (347)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg----~i~vwdl~~~~~----~~~~~  274 (347)
                                                  ...|...|.+++|+|++.++++++.|+    ++++|++.....    ...+.
T Consensus       215 ----------------------------~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~  266 (365)
T 4h5i_A          215 ----------------------------DFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVT  266 (365)
T ss_dssp             ----------------------------CCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ----------------------------cCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeec
Confidence                                        114788899999999999999999887    688999877653    45677


Q ss_pred             cCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehh-hhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          275 AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQ-VLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       275 ~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~-~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      .|...|++++|+|++ +||+|+.|++|+|||+++..      ++. .+.+|...|++|+|+|||++||+||.|++
T Consensus       267 ~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~------~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~t  335 (365)
T 4h5i_A          267 NRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLS------MSKIFKQAHSFAITEVTISPDSTYVASVSAANT  335 (365)
T ss_dssp             SSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTE------EEEEETTSSSSCEEEEEECTTSCEEEEEETTSE
T ss_pred             CCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCc------EEEEecCcccCCEEEEEECCCCCEEEEEeCCCe
Confidence            899999999999998 99999999999999998543      344 46789999999999999999999999985

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.96  E-value=2.3e-26  Score=204.78  Aligned_cols=192  Identities=16%  Similarity=0.316  Sum_probs=161.1

Q ss_pred             eeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCCc-----ceeee--cCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707          118 SIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKE-----FSGFK--SNSGLVKAIIITGDSNKIFTGHQDGKIRIW  188 (347)
Q Consensus       118 ~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~~-----~~~~~--~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw  188 (347)
                      ...+|.+.|.++.+  ++++|++++ ||.|++||....     ...+.  .|...|.+++|+|++++|++++.||.|++|
T Consensus        46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~  124 (337)
T 1gxr_A           46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW  124 (337)
T ss_dssp             EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred             eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence            34479999999886  477999998 999999996532     23333  788999999999999999999999999999


Q ss_pred             ecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCE
Q 043707          189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK  268 (347)
Q Consensus       189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~  268 (347)
                      |+++++......                              ...|...|.+++|+|++++|++++.||.|++||+++++
T Consensus       125 d~~~~~~~~~~~------------------------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~  174 (337)
T 1gxr_A          125 DLAAPTPRIKAE------------------------------LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT  174 (337)
T ss_dssp             ECCCC--EEEEE------------------------------EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             ECCCCCcceeee------------------------------cccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Confidence            998775322111                              12488899999999999999999999999999999999


Q ss_pred             EEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          269 CLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       269 ~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      .+..+..|...|.+++|+|++ +|++++.||.|++||++....      ... ..+...|.+++|+|++++|++++.||.
T Consensus       175 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~------~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~  247 (337)
T 1gxr_A          175 LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ------LQQ-HDFTSQIFSLGYCPTGEWLAVGMESSN  247 (337)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE------EEE-EECSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCce------Eee-ecCCCceEEEEECCCCCEEEEEcCCCc
Confidence            999999999999999999998 999999999999999985432      222 246788999999999999999998873

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.96  E-value=9.5e-27  Score=213.74  Aligned_cols=220  Identities=20%  Similarity=0.269  Sum_probs=173.1

Q ss_pred             ccccEEEEeec--CCEEEEecCCCcEEEEeCC-CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCcee
Q 043707          122 KEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL-KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVH  198 (347)
Q Consensus       122 h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~-~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~  198 (347)
                      |.+.|++++++  +++|++|+.||.|++||.. +....+..|...|.+++|+|++++|++++.||.|++||+.+++....
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  186 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQH  186 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEE
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEE
Confidence            67789999875  7799999999999999943 45677888999999999999999999999999999999988754332


Q ss_pred             eeecccc----------------------cccceEEeccCCCeE-EEEeecce-eeeeecCCCeeEEEEcCCCCEEEEEe
Q 043707          199 KRVGSLP----------------------TFKDYVKSSVNPKNY-VEVRRNRN-VLKIRHYDAVSCLSLNAEQGLLYSGS  254 (347)
Q Consensus       199 ~~~~~~~----------------------~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s  254 (347)
                      .......                      ....++....+.... ++...... .....|...|.+++|+|++.+|++++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  266 (425)
T 1r5m_A          187 FELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSAS  266 (425)
T ss_dssp             ECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred             eeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEc
Confidence            2211111                      001122222222211 11112121 23346889999999999999999999


Q ss_pred             CCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEcc
Q 043707          255 WDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQ  334 (347)
Q Consensus       255 ~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p  334 (347)
                      .|+.|++||+++++++..+..|...|.++.|+|++++++++.|+.|++||++...      ....+..|...|++++|+|
T Consensus       267 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------~~~~~~~~~~~i~~~~~s~  340 (425)
T 1r5m_A          267 DDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNT------LLALSIVDGVPIFAGRISQ  340 (425)
T ss_dssp             TTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTE------EEEEEECTTCCEEEEEECT
T ss_pred             CCCEEEEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCc------EeEecccCCccEEEEEEcC
Confidence            9999999999999999999999999999999999999999999999999997443      4556677889999999999


Q ss_pred             CCCEEEEecCCCC
Q 043707          335 ESAVVYCGSSDGL  347 (347)
Q Consensus       335 ~~~~l~sgs~DG~  347 (347)
                      ++++|++++.||.
T Consensus       341 ~~~~l~~~~~dg~  353 (425)
T 1r5m_A          341 DGQKYAVAFMDGQ  353 (425)
T ss_dssp             TSSEEEEEETTSC
T ss_pred             CCCEEEEEECCCe
Confidence            9999999999984

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.95  E-value=8.9e-27  Score=214.49  Aligned_cols=232  Identities=13%  Similarity=0.162  Sum_probs=171.6

Q ss_pred             eeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEec
Q 043707          115 LIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKV  190 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~  190 (347)
                      .+..+.+|.+.|.+++++  +++|++|+.||.|++||..  +....+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus       131 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~  210 (420)
T 3vl1_A          131 QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWEC  210 (420)
T ss_dssp             EEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred             eeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeEC
Confidence            455557899999999974  7799999999999999965  557788899999999999999999999999999999999


Q ss_pred             CCCCCceeeeec--------------------------------ccccccceEEeccCCCeE-EEEeecceeee--eecC
Q 043707          191 SRKNPSVHKRVG--------------------------------SLPTFKDYVKSSVNPKNY-VEVRRNRNVLK--IRHY  235 (347)
Q Consensus       191 ~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~h~  235 (347)
                      ++++........                                ..+....++....++... +++........  ..|.
T Consensus       211 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  290 (420)
T 3vl1_A          211 GTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFT  290 (420)
T ss_dssp             TTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTS
T ss_pred             CCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccC
Confidence            987643332211                                011222233333333222 22222222222  2478


Q ss_pred             CCeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCE-EEEEEec-CCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccc
Q 043707          236 DAVSCLSLNAEQG-LLYSGSWDKTLKVWRISDCK-CLESINA-HDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGT  312 (347)
Q Consensus       236 ~~V~~l~~~~~~~-~l~s~s~dg~i~vwdl~~~~-~~~~~~~-h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~  312 (347)
                      ..|.+++|+|++. +|++|+.||.|++||+++++ ++..+.. |...|.++.+.++.+|++++.|+.|++|++.......
T Consensus       291 ~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~  370 (420)
T 3vl1_A          291 CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESER  370 (420)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCS
T ss_pred             CCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCc
Confidence            8999999999998 99999999999999999875 4777776 6778888877655599999999999999997543211


Q ss_pred             ee---eehhhhhccCCcEEEEEEccCCC---EEEEecCCC
Q 043707          313 KH---FLAQVLLKQENAITALAVNQESA---VVYCGSSDG  346 (347)
Q Consensus       313 ~~---~~~~~~~~h~~~V~~l~~~p~~~---~l~sgs~DG  346 (347)
                      ..   .....+..|...|.+++|+|++.   .|++++.+|
T Consensus       371 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g  410 (420)
T 3vl1_A          371 PAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNN  410 (420)
T ss_dssp             CEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTT
T ss_pred             cceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCc
Confidence            10   11223557888999999999998   666666665

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.95  E-value=4.2e-27  Score=211.45  Aligned_cols=228  Identities=17%  Similarity=0.224  Sum_probs=173.0

Q ss_pred             eeccccEEEEeec-----CCEEEEecCCCcEEEEeCC--C-cceeeecCCCCeeEEEE------eCCCCEEEEEeCCCcE
Q 043707          120 VRKEGHIYSLAAS-----GDLLYTGSDSKNIRVWKNL--K-EFSGFKSNSGLVKAIII------TGDSNKIFTGHQDGKI  185 (347)
Q Consensus       120 ~~h~~~V~~l~~~-----~~~l~tg~~dg~I~vwd~~--~-~~~~~~~h~~~V~~l~~------sp~~~~l~s~~~Dg~I  185 (347)
                      .+|.+.|.++.++     +++|++|+.||.|++||..  + ....+.+|...|.+++|      +|++++|++++.||.|
T Consensus        62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i  141 (357)
T 3i2n_A           62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV  141 (357)
T ss_dssp             EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred             ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence            3788999999974     4899999999999999965  3 56788899999999965      6789999999999999


Q ss_pred             EEEecCCCCC-ceeeeec----------------ccccccceEEeccCCC-eEEEEeecceeeeeecCCCeeEEEEcC--
Q 043707          186 RIWKVSRKNP-SVHKRVG----------------SLPTFKDYVKSSVNPK-NYVEVRRNRNVLKIRHYDAVSCLSLNA--  245 (347)
Q Consensus       186 ~vwd~~~~~~-~~~~~~~----------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~V~~l~~~~--  245 (347)
                      ++||+++++. .......                ..+....++....+.. .++++..........|...|.+++|+|  
T Consensus       142 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~  221 (357)
T 3i2n_A          142 KVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKD  221 (357)
T ss_dssp             EEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSS
T ss_pred             EEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCC
Confidence            9999998762 2221110                0112222222222222 122223333445567899999999999  


Q ss_pred             -CCCEEEEEeCCCcEEEEeCCCCEEEEEEe-----cCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccc-----
Q 043707          246 -EQGLLYSGSWDKTLKVWRISDCKCLESIN-----AHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGT-----  312 (347)
Q Consensus       246 -~~~~l~s~s~dg~i~vwdl~~~~~~~~~~-----~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~-----  312 (347)
                       ++.+|++++.||.|++||+++++++..+.     .|...|.+++|+|++  +|++++.||.|++||++......     
T Consensus       222 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  301 (357)
T 3i2n_A          222 ISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSE  301 (357)
T ss_dssp             SSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTT
T ss_pred             CCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCC
Confidence             89999999999999999998876554444     899999999999987  69999999999999998543210     


Q ss_pred             --------eeeehhhhhccCCcEEEEEEccCCCEEE-EecCCCC
Q 043707          313 --------KHFLAQVLLKQENAITALAVNQESAVVY-CGSSDGL  347 (347)
Q Consensus       313 --------~~~~~~~~~~h~~~V~~l~~~p~~~~l~-sgs~DG~  347 (347)
                              ...++..+..|...|++++|+|++++|+ +++.||.
T Consensus       302 g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~  345 (357)
T 3i2n_A          302 GIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQT  345 (357)
T ss_dssp             SCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSE
T ss_pred             CCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCc
Confidence                    1135666788999999999999999888 7998873

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=7.3e-28  Score=227.99  Aligned_cols=199  Identities=11%  Similarity=0.052  Sum_probs=158.4

Q ss_pred             EeeeeccccEEEEeec-CCEEEEecCCCcEEEEeCCCc---ceeeecCCCCeeEE--EEeCCC-CEEEEEeCCCcEEEEe
Q 043707          117 GSIVRKEGHIYSLAAS-GDLLYTGSDSKNIRVWKNLKE---FSGFKSNSGLVKAI--IITGDS-NKIFTGHQDGKIRIWK  189 (347)
Q Consensus       117 ~~l~~h~~~V~~l~~~-~~~l~tg~~dg~I~vwd~~~~---~~~~~~h~~~V~~l--~~sp~~-~~l~s~~~Dg~I~vwd  189 (347)
                      ..+.+|.+.|++++|+ +..|++|+.||+|++||....   ...+.+|...|.+|  +|+|++ .+|+||+.|++|+|||
T Consensus       260 ~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD  339 (524)
T 2j04_B          260 LTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFN  339 (524)
T ss_dssp             EEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEEC
T ss_pred             EEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEE
Confidence            3677899999999985 569999999999999997632   44688999999999  567887 8999999999999999


Q ss_pred             cCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecC--CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 043707          190 VSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHY--DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC  267 (347)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~  267 (347)
                      +++.+.....                                .+|.  ..|.+++|+|++..|++++.|++|++||++++
T Consensus       340 ~~~~~~~~~~--------------------------------~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~  387 (524)
T 2j04_B          340 PKDIATTKTT--------------------------------VSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA  387 (524)
T ss_dssp             GGGHHHHCEE--------------------------------EEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT
T ss_pred             CCCCCccccc--------------------------------ccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc
Confidence            9876432111                                1243  35889999999999999999999999999999


Q ss_pred             EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccc----------------------------------
Q 043707          268 KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGT----------------------------------  312 (347)
Q Consensus       268 ~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~----------------------------------  312 (347)
                      .++..+.+|.+.|++|+|+|++ +|++|+.||+|++||+.......                                  
T Consensus       388 ~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~  467 (524)
T 2j04_B          388 FAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVY  467 (524)
T ss_dssp             TCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCC
T ss_pred             ccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceec
Confidence            9988999999999999999998 89999999999999864210000                                  


Q ss_pred             ----eeeehhhhhccCCcEEEEEEccCC---CEEEEecCCCC
Q 043707          313 ----KHFLAQVLLKQENAITALAVNQES---AVVYCGSSDGL  347 (347)
Q Consensus       313 ----~~~~~~~~~~h~~~V~~l~~~p~~---~~l~sgs~DG~  347 (347)
                          .......+.+|...|.+|+|+|++   ..|++|+.||+
T Consensus       468 ~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~  509 (524)
T 2j04_B          468 PLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGL  509 (524)
T ss_dssp             C-------------CCCSCCCEEECCSTTTTTEEEEECTTSE
T ss_pred             ccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCce
Confidence                012234566789999999999996   49999999984

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.95  E-value=3.8e-27  Score=216.99  Aligned_cols=182  Identities=18%  Similarity=0.280  Sum_probs=152.6

Q ss_pred             EeecCCEEEEecCCCcEEEEeCCC--cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeeccccc
Q 043707          129 LAASGDLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPT  206 (347)
Q Consensus       129 l~~~~~~l~tg~~dg~I~vwd~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~  206 (347)
                      +.+++++|++|+.||.|++||...  ....+.+|.+.|.+++|+|++++|++|+.||.|++||+++++.....       
T Consensus       105 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-------  177 (420)
T 3vl1_A          105 AKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL-------  177 (420)
T ss_dssp             ECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE-------
T ss_pred             EecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE-------
Confidence            345789999999999999999653  34555789999999999999999999999999999999887543221       


Q ss_pred             ccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecC---CCcEEEE
Q 043707          207 FKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH---DDAINSV  283 (347)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h---~~~v~~i  283 (347)
                                               .+|...|.+++|+|++.+|++++.|++|++||+++++++..+..|   ...|.++
T Consensus       178 -------------------------~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~  232 (420)
T 3vl1_A          178 -------------------------IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSI  232 (420)
T ss_dssp             -------------------------ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEE
T ss_pred             -------------------------cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEE
Confidence                                     249999999999999999999999999999999999999998753   3444444


Q ss_pred             ---------------------EeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCC-EEE
Q 043707          284 ---------------------VAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESA-VVY  340 (347)
Q Consensus       284 ---------------------~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~l~  340 (347)
                                           +|+|++ +|++|+.||.|++||++....     .......|...|++++|+|+++ +|+
T Consensus       233 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~  307 (420)
T 3vl1_A          233 ALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ-----TIQLPSKFTCSCNSLTVDGNNANYIY  307 (420)
T ss_dssp             EEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCE-----EEEECCTTSSCEEEEEECSSCTTEEE
T ss_pred             EEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCce-----eEEcccccCCCceeEEEeCCCCCEEE
Confidence                                 457777 899999999999999986543     3333456888999999999998 999


Q ss_pred             EecCCCC
Q 043707          341 CGSSDGL  347 (347)
Q Consensus       341 sgs~DG~  347 (347)
                      +|+.||.
T Consensus       308 ~g~~dg~  314 (420)
T 3vl1_A          308 AGYENGM  314 (420)
T ss_dssp             EEETTSE
T ss_pred             EEeCCCe
Confidence            9999973

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.95  E-value=3.4e-26  Score=219.21  Aligned_cols=236  Identities=19%  Similarity=0.362  Sum_probs=183.3

Q ss_pred             CCCCCCcccccc------------cceeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC-CcceeeecCCCCee
Q 043707          101 PYSPNENLLSSC------------NGLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL-KEFSGFKSNSGLVK  165 (347)
Q Consensus       101 ~~~p~~~~~~~~------------~~~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~-~~~~~~~~h~~~V~  165 (347)
                      .|+|++..+...            .+++..+.+|.+.|.++++  ++++|++++.||.|++||.. ..+..+.+|...|.
T Consensus       269 ~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~  348 (577)
T 2ymu_A          269 AFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVW  348 (577)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEE
T ss_pred             EEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEE
Confidence            466776654322            3456778899999998886  57799999999999999955 45677888999999


Q ss_pred             EEEEeCCCCEEEEEeCCCcEEEEecCCCCCceee--------eecccccccceEEeccCCCeEEEEeec---ceeeeeec
Q 043707          166 AIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHK--------RVGSLPTFKDYVKSSVNPKNYVEVRRN---RNVLKIRH  234 (347)
Q Consensus       166 ~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~h  234 (347)
                      +++|+|++++|++++.||.|++||.... .....        .+...+....++....+.  .+.++..   ......+|
T Consensus       349 ~~~~s~~g~~l~~~~~dg~v~~~~~~~~-~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~--~v~~~~~~~~~~~~~~~~  425 (577)
T 2ymu_A          349 GVAFSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVRGVAFSPDGQTIASASDDK--TVKLWNRNGQLLQTLTGH  425 (577)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTCC-EEEEEECCSSCEEEEEECTTSSCEEEEETTS--EEEEECTTCCEEEEEECC
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEcCCCC-EEEEecCCCCCeEEEEECCCCCEEEEEeCCC--EEEEEeCCCCEEEEecCC
Confidence            9999999999999999999999996532 21111        111112222222222222  2222221   12334579


Q ss_pred             CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccce
Q 043707          235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTK  313 (347)
Q Consensus       235 ~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~  313 (347)
                      ...|++++|+|++.+|++++.|++|++||+ +++.+..+.+|...|.+++|+|++ +|++++.|+.|++||..  ++   
T Consensus       426 ~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~--~~---  499 (577)
T 2ymu_A          426 SSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQ---  499 (577)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT--SC---
T ss_pred             CCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC--CC---
Confidence            999999999999999999999999999996 678889999999999999999998 99999999999999964  22   


Q ss_pred             eeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          314 HFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       314 ~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                        +.+.+.+|...|++|+|+|++++|++++.||+
T Consensus       500 --~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~  531 (577)
T 2ymu_A          500 --LLQTLTGHSSSVRGVAFSPDGQTIASASDDKT  531 (577)
T ss_dssp             --EEEEEECCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred             --EEEEEeCCCCCEEEEEEcCCCCEEEEEECcCE
Confidence              56677899999999999999999999999984

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=7.5e-27  Score=231.18  Aligned_cols=231  Identities=18%  Similarity=0.156  Sum_probs=167.2

Q ss_pred             eEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCC----CcceeeecCCCCeeEEEEeCC--CCEEEEEeCCCcEEE
Q 043707          116 IGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL----KEFSGFKSNSGLVKAIIITGD--SNKIFTGHQDGKIRI  187 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~----~~~~~~~~h~~~V~~l~~sp~--~~~l~s~~~Dg~I~v  187 (347)
                      +..+.+|.+.|++++++  +++|++|+.||.|+|||..    +....+.+|.+.|.+++|+|+  +++|++|+.||.|++
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   81 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence            45677888888888864  6788888889999999854    335567788888999999887  888999999999999


Q ss_pred             EecCCCCCceeee----------eccccc--ccceEEeccCCCeEE-EEeec---ceeeeeecCCCeeEEEEcC------
Q 043707          188 WKVSRKNPSVHKR----------VGSLPT--FKDYVKSSVNPKNYV-EVRRN---RNVLKIRHYDAVSCLSLNA------  245 (347)
Q Consensus       188 wd~~~~~~~~~~~----------~~~~~~--~~~~~~~~~~~~~~~-~~~~~---~~~~~~~h~~~V~~l~~~~------  245 (347)
                      ||+.+++......          +...+.  ...++....++...+ ++...   ......+|...|.+++|+|      
T Consensus        82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~  161 (753)
T 3jro_A           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  161 (753)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred             EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence            9888764211111          111222  222222222222222 22222   1233457899999999999      


Q ss_pred             -------CCCEEEEEeCCCcEEEEeCCCC----EEEEEEecCCCcEEEEEeCCC---C-EEEEEeCCCcEEEEEcccCCc
Q 043707          246 -------EQGLLYSGSWDKTLKVWRISDC----KCLESINAHDDAINSVVAGFD---S-LVFTGSADGTVKVWRRELQGK  310 (347)
Q Consensus       246 -------~~~~l~s~s~dg~i~vwdl~~~----~~~~~~~~h~~~v~~i~~~~~---~-~l~s~~~dg~I~vwd~~~~~~  310 (347)
                             ++.+|++|+.||+|++||++++    .++..+.+|...|.+++|+|+   + +|++++.||.|++||++....
T Consensus       162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~  241 (753)
T 3jro_A          162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG  241 (753)
T ss_dssp             -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS
T ss_pred             cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC
Confidence                   5899999999999999999877    677888999999999999999   6 899999999999999986432


Q ss_pred             cceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          311 GTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       311 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      . ..........|...|++++|+|++++|++|+.||.
T Consensus       242 ~-~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~  277 (753)
T 3jro_A          242 P-WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK  277 (753)
T ss_dssp             C-CBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSC
T ss_pred             c-ceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCE
Confidence            1 11123344568889999999999999999999984

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.95  E-value=3.1e-26  Score=212.36  Aligned_cols=232  Identities=18%  Similarity=0.244  Sum_probs=174.6

Q ss_pred             eEeeeeccccEEEEeec---CCEEEEecCCCcEEEEeCC------------CcceeeecCCCCeeEEEEeCCCC-EEEEE
Q 043707          116 IGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNL------------KEFSGFKSNSGLVKAIIITGDSN-KIFTG  179 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~------------~~~~~~~~h~~~V~~l~~sp~~~-~l~s~  179 (347)
                      +.....|.+.|.++++.   +++|++|+.||.|++|+..            +....+.+|...|.+++|+|++. +|++|
T Consensus       121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred             EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence            35566899999999875   4589999999999999954            34567788999999999999888 99999


Q ss_pred             eCCCcEEEEecCCCCCce---------------eeeecccccccceEEeccCCCeE--EEEeec----ceeeeeecCCCe
Q 043707          180 HQDGKIRIWKVSRKNPSV---------------HKRVGSLPTFKDYVKSSVNPKNY--VEVRRN----RNVLKIRHYDAV  238 (347)
Q Consensus       180 ~~Dg~I~vwd~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~h~~~V  238 (347)
                      +.||.|++||+.......               ...+...+....++........+  +++...    .......|...|
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  280 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV  280 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence            999999999998743210               00111122222333333222222  222222    112334789999


Q ss_pred             eEEEEcCCCC-EEEEEeCCCcEEEEeCCC-CEEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccc--
Q 043707          239 SCLSLNAEQG-LLYSGSWDKTLKVWRISD-CKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGT--  312 (347)
Q Consensus       239 ~~l~~~~~~~-~l~s~s~dg~i~vwdl~~-~~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~--  312 (347)
                      ++++|+|++. +|++|+.||+|++||+++ .+++..+..|...|.++.|+|++  +|++++.|+.|+|||+...+...  
T Consensus       281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  360 (430)
T 2xyi_A          281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST  360 (430)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCH
T ss_pred             EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCc
Confidence            9999999876 799999999999999998 56789999999999999999987  79999999999999998633210  


Q ss_pred             ------eeeehhhhhccCCcEEEEEEccCCC-EEEEecCCCC
Q 043707          313 ------KHFLAQVLLKQENAITALAVNQESA-VVYCGSSDGL  347 (347)
Q Consensus       313 ------~~~~~~~~~~h~~~V~~l~~~p~~~-~l~sgs~DG~  347 (347)
                            ...++..+.+|...|++++|+|++. +|++++.||.
T Consensus       361 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~  402 (430)
T 2xyi_A          361 EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI  402 (430)
T ss_dssp             HHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSE
T ss_pred             cccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCC
Confidence                  0124556678889999999999998 9999999873

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.95  E-value=6.5e-26  Score=199.90  Aligned_cols=225  Identities=14%  Similarity=0.151  Sum_probs=174.6

Q ss_pred             cceeEeeeeccccEEEEee-cCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707          113 NGLIGSIVRKEGHIYSLAA-SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK  189 (347)
Q Consensus       113 ~~~i~~l~~h~~~V~~l~~-~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd  189 (347)
                      ..++..+.+|.+.|.++.+ ++++|++|+.||.|++||..  +....+..|...|.+++|+|++++|++++.||.|++|+
T Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~   87 (313)
T 3odt_A            8 YQLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVP   87 (313)
T ss_dssp             CEEEEEECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             HHHHHHhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence            3568899999999999986 68899999999999999954  34667788999999999999999999999999999999


Q ss_pred             cCCCCCcee-eeecccc-------cccceEEeccCCCeEEEEeec--ceeeeeecCCCeeEEEEcC-CCCEEEEEeCCCc
Q 043707          190 VSRKNPSVH-KRVGSLP-------TFKDYVKSSVNPKNYVEVRRN--RNVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKT  258 (347)
Q Consensus       190 ~~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~  258 (347)
                      +........ .......       ....++........ +.++..  .......|...|.+++|.+ ++.+|++++.||.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~-i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  166 (313)
T 3odt_A           88 LFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKT-AKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKT  166 (313)
T ss_dssp             TTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSE-EEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSC
T ss_pred             eeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCC-EEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECCCC
Confidence            976532111 1111000       01112222222222 222222  2233446899999999998 8999999999999


Q ss_pred             EEEEeCCCCEEEEEEec-CCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCC
Q 043707          259 LKVWRISDCKCLESINA-HDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESA  337 (347)
Q Consensus       259 i~vwdl~~~~~~~~~~~-h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~  337 (347)
                      |++||  ..+.+..+.. |...|.+++|+|++.+++++.||.|++||++...      +...+..|...|++++|+|++ 
T Consensus       167 i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~i~~~~~~~~~-  237 (313)
T 3odt_A          167 IKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGD------VLRTYEGHESFVYCIKLLPNG-  237 (313)
T ss_dssp             EEEEE--TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCC------EEEEEECCSSCEEEEEECTTS-
T ss_pred             EEEEe--cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchh------hhhhhhcCCceEEEEEEecCC-
Confidence            99999  5677778877 8999999999999999999999999999998543      456677899999999999999 


Q ss_pred             EEEEecCCCC
Q 043707          338 VVYCGSSDGL  347 (347)
Q Consensus       338 ~l~sgs~DG~  347 (347)
                      .|++++.||.
T Consensus       238 ~l~~~~~dg~  247 (313)
T 3odt_A          238 DIVSCGEDRT  247 (313)
T ss_dssp             CEEEEETTSE
T ss_pred             CEEEEecCCE
Confidence            5888988873

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.95  E-value=1.5e-26  Score=227.10  Aligned_cols=196  Identities=22%  Similarity=0.397  Sum_probs=163.9

Q ss_pred             eeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCC--cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEec
Q 043707          115 LIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKV  190 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~  190 (347)
                      ....+.+|.+.|.++.+  ++++|++|+.||+|+|||...  ....+.+|...|.+++|+|++++|++|+.|++|++||+
T Consensus       422 ~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~  501 (694)
T 3dm0_A          422 AQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT  501 (694)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred             ccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEC
Confidence            35678899999999886  578999999999999999653  46778899999999999999999999999999999998


Q ss_pred             CCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCC--CEEEEEeCCCcEEEEeCCCCE
Q 043707          191 SRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ--GLLYSGSWDKTLKVWRISDCK  268 (347)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~--~~l~s~s~dg~i~vwdl~~~~  268 (347)
                      ..........  .                           ..+|...|.|++|+|++  ..|++++.|++|++||+++++
T Consensus       502 ~~~~~~~~~~--~---------------------------~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~  552 (694)
T 3dm0_A          502 LGECKYTISE--G---------------------------GEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK  552 (694)
T ss_dssp             TSCEEEEECS--S---------------------------TTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC
T ss_pred             CCCcceeecc--C---------------------------CCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc
Confidence            6432110000  0                           01488899999999986  689999999999999999999


Q ss_pred             EEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          269 CLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       269 ~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      ++..+.+|...|.+++|+|++ +|++|+.||.|++||++...      .+..+ .+...|.+++|+|++.+|++++.++
T Consensus       553 ~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~------~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~  624 (694)
T 3dm0_A          553 LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK------KLYSL-EANSVIHALCFSPNRYWLCAATEHG  624 (694)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTE------EEECC-BCSSCEEEEEECSSSSEEEEEETTE
T ss_pred             EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc------eEEEe-cCCCcEEEEEEcCCCcEEEEEcCCC
Confidence            999999999999999999998 99999999999999998543      22333 2456899999999999998887553

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.95  E-value=3.9e-26  Score=208.47  Aligned_cols=226  Identities=12%  Similarity=0.089  Sum_probs=172.2

Q ss_pred             eeEeeeeccccEEEEee--c----C---CEEEEecCCCcEEEEeCC--Cc-----ceeeecC-----CCCeeEEEEe---
Q 043707          115 LIGSIVRKEGHIYSLAA--S----G---DLLYTGSDSKNIRVWKNL--KE-----FSGFKSN-----SGLVKAIIIT---  170 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~--~----~---~~l~tg~~dg~I~vwd~~--~~-----~~~~~~h-----~~~V~~l~~s---  170 (347)
                      ++..+.+|...|.++.+  +    +   ++|++|+.||.|++|+..  +.     ...+..|     ...|.+++|+   
T Consensus        54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  133 (397)
T 1sq9_A           54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN  133 (397)
T ss_dssp             GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC
T ss_pred             cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeecc
Confidence            57788899999999886  4    7   899999999999999843  33     6677778     5899999999   


Q ss_pred             -CCCCE-EEEEeCCCcEEEEecCC------CCCce-----eee---------------ecccccccceEEeccCCCeEE-
Q 043707          171 -GDSNK-IFTGHQDGKIRIWKVSR------KNPSV-----HKR---------------VGSLPTFKDYVKSSVNPKNYV-  221 (347)
Q Consensus       171 -p~~~~-l~s~~~Dg~I~vwd~~~------~~~~~-----~~~---------------~~~~~~~~~~~~~~~~~~~~~-  221 (347)
                       |++++ |++++.||.|++||++.      ++...     ...               +...+.. .++....+....+ 
T Consensus       134 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~  212 (397)
T 1sq9_A          134 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQIS  212 (397)
T ss_dssp             ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEE
T ss_pred             CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEE
Confidence             99999 99999999999999998      44332     111               1111222 2222222222111 


Q ss_pred             EEeecceee-eee---c---CCCeeEEEEcCCCCEEEEEeCC---CcEEEEeCCCCEEEEEEec-------------CCC
Q 043707          222 EVRRNRNVL-KIR---H---YDAVSCLSLNAEQGLLYSGSWD---KTLKVWRISDCKCLESINA-------------HDD  278 (347)
Q Consensus       222 ~~~~~~~~~-~~~---h---~~~V~~l~~~~~~~~l~s~s~d---g~i~vwdl~~~~~~~~~~~-------------h~~  278 (347)
                      ++....... ...   |   ...|.+++|+|++.+|++++.|   +.|++||+++++++..+..             |..
T Consensus       213 d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (397)
T 1sq9_A          213 ELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS  292 (397)
T ss_dssp             ETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS
T ss_pred             ECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCC
Confidence            222222222 234   7   8999999999999999999999   9999999999999999998             999


Q ss_pred             cEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhh------cc---------------CCcEEEEEEccCC
Q 043707          279 AINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLL------KQ---------------ENAITALAVNQES  336 (347)
Q Consensus       279 ~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~------~h---------------~~~V~~l~~~p~~  336 (347)
                      .|.+++|+|++ +|++++.||.|++||++...      +...+.      .|               ...|++++|+|++
T Consensus       293 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g  366 (397)
T 1sq9_A          293 WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE------RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG  366 (397)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTTE------EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc------eeEEEecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence            99999999987 99999999999999997543      333444      55               8999999999998


Q ss_pred             ----------CEEEEecCCCC
Q 043707          337 ----------AVVYCGSSDGL  347 (347)
Q Consensus       337 ----------~~l~sgs~DG~  347 (347)
                                ++|++|+.||.
T Consensus       367 ~~~~~~~~~~~~l~s~~~dg~  387 (397)
T 1sq9_A          367 WRSGMGADLNESLCCVCLDRS  387 (397)
T ss_dssp             TSBSTTCTTSCEEEEEETTTE
T ss_pred             ccccccccccceEEEecCCCc
Confidence                      79999999983

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.95  E-value=6.1e-26  Score=208.35  Aligned_cols=215  Identities=15%  Similarity=0.171  Sum_probs=164.5

Q ss_pred             CCCCCCCcccccc------------cceeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCCC--ccee-------
Q 043707          100 PPYSPNENLLSSC------------NGLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLK--EFSG-------  156 (347)
Q Consensus       100 ~~~~p~~~~~~~~------------~~~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~~--~~~~-------  156 (347)
                      ..|+|++..++..            ...+..+..|.+.|.++.++  +++|++++.||.|++||...  ....       
T Consensus       114 ~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  193 (425)
T 1r5m_A          114 LAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETG  193 (425)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccC
Confidence            3577777665432            23667788899999999874  77999999999999998532  1222       


Q ss_pred             -------------------------------------------------eecCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 043707          157 -------------------------------------------------FKSNSGLVKAIIITGDSNKIFTGHQDGKIRI  187 (347)
Q Consensus       157 -------------------------------------------------~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~v  187 (347)
                                                                       +..|...|.+++|+|++++|++++.||.|++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  273 (425)
T 1r5m_A          194 GSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRI  273 (425)
T ss_dssp             ------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             ccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence                                                             2345556666666666666666666666666


Q ss_pred             EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 043707          188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC  267 (347)
Q Consensus       188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~  267 (347)
                      ||+++++...                                ....|...|.+++|+|++ +|++++.|+.|++||++++
T Consensus       274 ~d~~~~~~~~--------------------------------~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~  320 (425)
T 1r5m_A          274 WHGGNGNSQN--------------------------------CFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN  320 (425)
T ss_dssp             ECSSSBSCSE--------------------------------EECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT
T ss_pred             EECCCCccce--------------------------------EecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC
Confidence            6665543221                                122488999999999999 9999999999999999999


Q ss_pred             EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCcc--------------ceeeehhhhhccCC--cEEEE
Q 043707          268 KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG--------------TKHFLAQVLLKQEN--AITAL  330 (347)
Q Consensus       268 ~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~--------------~~~~~~~~~~~h~~--~V~~l  330 (347)
                      +++..+..|...|.+++|+|++ +|++++.||.|++||++.....              ....+...+..|..  .|+++
T Consensus       321 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  400 (425)
T 1r5m_A          321 TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDL  400 (425)
T ss_dssp             EEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEE
T ss_pred             cEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEE
Confidence            9999999999999999999997 9999999999999999854310              00114566777866  99999


Q ss_pred             EEccCCCEEEEecCCCC
Q 043707          331 AVNQESAVVYCGSSDGL  347 (347)
Q Consensus       331 ~~~p~~~~l~sgs~DG~  347 (347)
                      +|+|++++|++++.||.
T Consensus       401 ~~s~~~~~l~~~~~dg~  417 (425)
T 1r5m_A          401 SWNCAGNKISVAYSLQE  417 (425)
T ss_dssp             EECTTSSEEEEEESSSC
T ss_pred             EccCCCceEEEEecCce
Confidence            99999999999999984

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.95  E-value=3.2e-26  Score=211.57  Aligned_cols=214  Identities=16%  Similarity=0.273  Sum_probs=176.2

Q ss_pred             CCCCCCCCcccccc-------------cceeEeeeeccccEEEEeecCCEEEEecCCCcEEEEeCC---CcceeeecCCC
Q 043707           99 MPPYSPNENLLSSC-------------NGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNL---KEFSGFKSNSG  162 (347)
Q Consensus        99 ~~~~~p~~~~~~~~-------------~~~i~~l~~h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~---~~~~~~~~h~~  162 (347)
                      ...|+|+|..++..             ...+..+.+|...|.++.+++.+|++|+.|+.+++||..   .....+.+|..
T Consensus       152 sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~  231 (420)
T 4gga_A          152 SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ  231 (420)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS
T ss_pred             EEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEeccccc
Confidence            34689999877543             246788889999999999999999999999999999954   33567889999


Q ss_pred             CeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEE
Q 043707          163 LVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLS  242 (347)
Q Consensus       163 ~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  242 (347)
                      .+..+.|+|+++++++++.|+.|++|+...++......                            .....|...|.+++
T Consensus       232 ~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~----------------------------~~~~~~~~~V~~~~  283 (420)
T 4gga_A          232 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL----------------------------QTFTQHQGAVKAVA  283 (420)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCS----------------------------EEECCCSSCEEEEE
T ss_pred             ceeeeeecCCCCeeeeeeccccceEEeeccccccceee----------------------------eeecccCCceeeee
Confidence            99999999999999999999999999998775321110                            01124889999999


Q ss_pred             EcCC-CCEEEEE--eCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEE--eCCCcEEEEEcccCCccceeee
Q 043707          243 LNAE-QGLLYSG--SWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTG--SADGTVKVWRRELQGKGTKHFL  316 (347)
Q Consensus       243 ~~~~-~~~l~s~--s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~--~~dg~I~vwd~~~~~~~~~~~~  316 (347)
                      |+|. ..+++++  +.|++|++||+++++++..+..|. .+.++.|++++ .++++  +.|+.|+|||+....      +
T Consensus       284 ~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~-~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~------~  356 (420)
T 4gga_A          284 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA------K  356 (420)
T ss_dssp             ECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS-CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC------E
T ss_pred             eCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc-ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc------E
Confidence            9996 4566554  579999999999999999998664 57888888886 55544  379999999998543      5


Q ss_pred             hhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          317 AQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       317 ~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      +..+.+|...|++|+|+|+|++|++|+.||+
T Consensus       357 v~~l~gH~~~V~~l~~spdg~~l~S~s~D~t  387 (420)
T 4gga_A          357 VAELKGHTSRVLSLTMSPDGATVASAAADET  387 (420)
T ss_dssp             EEEECCCSSCEEEEEECTTSSCEEEEETTTE
T ss_pred             EEEEcCCCCCEEEEEEcCCCCEEEEEecCCe
Confidence            6778899999999999999999999999984

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.95  E-value=3.4e-26  Score=206.02  Aligned_cols=222  Identities=14%  Similarity=0.241  Sum_probs=166.5

Q ss_pred             ccccEEEEeec------CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCC
Q 043707          122 KEGHIYSLAAS------GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSR  192 (347)
Q Consensus       122 h~~~V~~l~~~------~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~  192 (347)
                      |.+.|++++++      +.+|++|+.||.|++||..  +....+.+|...|.+++|+| ++++|++|+.||.|++||+++
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  147 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT  147 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence            45679888864      4499999999999999954  55677889999999999999 899999999999999999987


Q ss_pred             CCCceeee-----------ecccccccceEEeccCCCeEE-EEeeccee-----------------------------ee
Q 043707          193 KNPSVHKR-----------VGSLPTFKDYVKSSVNPKNYV-EVRRNRNV-----------------------------LK  231 (347)
Q Consensus       193 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------------------------~~  231 (347)
                      ++......           +...+....++....+....+ +.......                             ..
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (366)
T 3k26_A          148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR  227 (366)
T ss_dssp             TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred             CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence            75433221           111122222233333222222 11111110                             11


Q ss_pred             eecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC--------------EEEEEEecCCCcEEEEEeCCC--C-EEEEE
Q 043707          232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC--------------KCLESINAHDDAINSVVAGFD--S-LVFTG  294 (347)
Q Consensus       232 ~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~--------------~~~~~~~~h~~~v~~i~~~~~--~-~l~s~  294 (347)
                      ..|...|.+++|+  +.+|++++.|+.|++||++++              ..+..+..|...|.+++|+|+  + +|++|
T Consensus       228 ~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~  305 (366)
T 3k26_A          228 DIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALG  305 (366)
T ss_dssp             SSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEE
T ss_pred             cCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEE
Confidence            1288999999999  679999999999999999876              348888999999999999998  6 99999


Q ss_pred             eCCCcEEEEEcccCCccceeeehhhhhcc--CCcEEEEEEccCCCEEEEecCCCC
Q 043707          295 SADGTVKVWRRELQGKGTKHFLAQVLLKQ--ENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       295 ~~dg~I~vwd~~~~~~~~~~~~~~~~~~h--~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      +.||.|++||++....  .......+..|  ...|++++|+|++++|++|+.||.
T Consensus       306 ~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  358 (366)
T 3k26_A          306 NQVGKLYVWDLEVEDP--HKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDAS  358 (366)
T ss_dssp             CTTSCEEEEECCSSSG--GGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ecCCcEEEEECCCCCC--ccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCE
Confidence            9999999999986542  11122355566  789999999999999999999984

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.95  E-value=9.8e-26  Score=210.54  Aligned_cols=222  Identities=22%  Similarity=0.334  Sum_probs=173.4

Q ss_pred             eeEeeeecccc-EEEEeecCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecC
Q 043707          115 LIGSIVRKEGH-IYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVS  191 (347)
Q Consensus       115 ~i~~l~~h~~~-V~~l~~~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~  191 (347)
                      ....+.+|.+. +.++.+++++|++|+.||+|++||..  +....+.+|.+.|.+++|+|++ +|++|+.||+|++||++
T Consensus       113 ~~~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~  191 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK  191 (464)
T ss_dssp             EEEEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETT
T ss_pred             ceEEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC
Confidence            45688899887 58899999999999999999999954  4567788999999999999988 99999999999999998


Q ss_pred             CCCCceeeeec--------cc--ccccceEEeccCCCeEE-EEeecc------------------------eeeeeecCC
Q 043707          192 RKNPSVHKRVG--------SL--PTFKDYVKSSVNPKNYV-EVRRNR------------------------NVLKIRHYD  236 (347)
Q Consensus       192 ~~~~~~~~~~~--------~~--~~~~~~~~~~~~~~~~~-~~~~~~------------------------~~~~~~h~~  236 (347)
                      +++........        ..  +....++....+....+ ++....                        .....+|..
T Consensus       192 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (464)
T 3v7d_B          192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA  271 (464)
T ss_dssp             TTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSS
T ss_pred             CCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccc
Confidence            87543222110        01  11122233333322222 222111                        123446777


Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceee
Q 043707          237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHF  315 (347)
Q Consensus       237 ~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~  315 (347)
                      .|.++  ++++.+|++++.||.|++||+++++++..+.+|...|.+++|+|++ +|++|+.||.|++||++.+.      
T Consensus       272 ~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~------  343 (464)
T 3v7d_B          272 SVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE------  343 (464)
T ss_dssp             CEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE------
T ss_pred             eEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc------
Confidence            77776  5678999999999999999999999999999999999999999987 99999999999999997543      


Q ss_pred             ehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          316 LAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       316 ~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      +...+.+|...|.+++|+  +.+|++|+.||+
T Consensus       344 ~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~  373 (464)
T 3v7d_B          344 LMYTLQGHTALVGLLRLS--DKFLVSAAADGS  373 (464)
T ss_dssp             EEEEECCCSSCEEEEEEC--SSEEEEEETTSE
T ss_pred             EEEEEeCCCCcEEEEEEc--CCEEEEEeCCCc
Confidence            566778899999999997  589999999984

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.7e-26  Score=212.16  Aligned_cols=198  Identities=15%  Similarity=0.236  Sum_probs=166.1

Q ss_pred             eccccEEEEee--cCCEEEEecCCCcEEEEeCCC------cceeeecCCCCeeEEEEeCC-CCEEEEEeCCCcEEEEecC
Q 043707          121 RKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK------EFSGFKSNSGLVKAIIITGD-SNKIFTGHQDGKIRIWKVS  191 (347)
Q Consensus       121 ~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~------~~~~~~~h~~~V~~l~~sp~-~~~l~s~~~Dg~I~vwd~~  191 (347)
                      .|...|.++++  ++++|++|+.||.|++|+...      ....+.+|...|.+++|+|+ +++|++++.||.|++||+.
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~  144 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN  144 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred             ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence            57888999887  577999999999999999654      56678889999999999998 8999999999999999998


Q ss_pred             CCCCceee-eecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCEE
Q 043707          192 RKNPSVHK-RVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCKC  269 (347)
Q Consensus       192 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwdl~~~~~  269 (347)
                      +.+..... .....                        .....|...|.+++|+|+ +.+|++++.||.|++||++++++
T Consensus       145 ~~~~~~~~~~~~~~------------------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~  200 (416)
T 2pm9_A          145 KCTESPSNYTPLTP------------------------GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE  200 (416)
T ss_dssp             TTSSCTTTCCCBCC------------------------CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE
T ss_pred             CCcccccccccccc------------------------ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc
Confidence            87521100 00000                        001248899999999998 78999999999999999999999


Q ss_pred             EEEEecC------CCcEEEEEeCCCC--EEEEEeCCC---cEEEEEcccCCccceeeehhhhh-ccCCcEEEEEEcc-CC
Q 043707          270 LESINAH------DDAINSVVAGFDS--LVFTGSADG---TVKVWRRELQGKGTKHFLAQVLL-KQENAITALAVNQ-ES  336 (347)
Q Consensus       270 ~~~~~~h------~~~v~~i~~~~~~--~l~s~~~dg---~I~vwd~~~~~~~~~~~~~~~~~-~h~~~V~~l~~~p-~~  336 (347)
                      +..+..|      ...|.+++|+|++  +|++++.|+   .|++||++....     +...+. +|...|++++|+| ++
T Consensus       201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-----~~~~~~~~~~~~v~~~~~s~~~~  275 (416)
T 2pm9_A          201 VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-----PLQTLNQGHQKGILSLDWCHQDE  275 (416)
T ss_dssp             EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-----CSBCCCSCCSSCEEEEEECSSCS
T ss_pred             ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-----CcEEeecCccCceeEEEeCCCCC
Confidence            9999877      7889999999986  899999999   999999986533     456666 8999999999999 89


Q ss_pred             CEEEEecCCCC
Q 043707          337 AVVYCGSSDGL  347 (347)
Q Consensus       337 ~~l~sgs~DG~  347 (347)
                      ++|++++.||+
T Consensus       276 ~~l~s~~~dg~  286 (416)
T 2pm9_A          276 HLLLSSGRDNT  286 (416)
T ss_dssp             SCEEEEESSSE
T ss_pred             CeEEEEeCCCC
Confidence            99999999973

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.95  E-value=2.9e-26  Score=212.62  Aligned_cols=218  Identities=15%  Similarity=0.237  Sum_probs=160.3

Q ss_pred             eccccEEEEee--cCCEEEEecCCCcEEEEeCCC-------------cceeeecCC------------CCeeEEEEeCCC
Q 043707          121 RKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK-------------EFSGFKSNS------------GLVKAIIITGDS  173 (347)
Q Consensus       121 ~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~-------------~~~~~~~h~------------~~V~~l~~sp~~  173 (347)
                      .|.+.|+++++  ++++|++|+.||.|+||+...             ....+.+|.            +.|.+++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            46778888886  477999999999999998542             255778898            889999999987


Q ss_pred             --CEEEEEeCCCcEEEEecCCCCCce------------------------------------------------eeeecc
Q 043707          174 --NKIFTGHQDGKIRIWKVSRKNPSV------------------------------------------------HKRVGS  203 (347)
Q Consensus       174 --~~l~s~~~Dg~I~vwd~~~~~~~~------------------------------------------------~~~~~~  203 (347)
                        .+|++++.||+|++||+..+....                                                ...+..
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              789999999999999987632110                                                001111


Q ss_pred             cccccceEEeccCCCeEEEEeecc---ee-e--------eeecCCCeeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCEE-
Q 043707          204 LPTFKDYVKSSVNPKNYVEVRRNR---NV-L--------KIRHYDAVSCLSLNAEQ-GLLYSGSWDKTLKVWRISDCKC-  269 (347)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~---~~-~--------~~~h~~~V~~l~~~~~~-~~l~s~s~dg~i~vwdl~~~~~-  269 (347)
                      .+.. .++....  ...+.++.-.   .. .        ..+|...|.+++|+|++ .+|++|+.||+|++||+++++. 
T Consensus       186 ~~~~-~~l~s~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  262 (447)
T 3dw8_B          186 NSDY-ETYLSAD--DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC  262 (447)
T ss_dssp             CTTS-SEEEEEC--SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred             cCCC-CEEEEeC--CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence            1222 2233332  2333333222   11 1        23689999999999998 9999999999999999999887 


Q ss_pred             ---EEEEecCCC------------cEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCc-------
Q 043707          270 ---LESINAHDD------------AINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENA-------  326 (347)
Q Consensus       270 ---~~~~~~h~~------------~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~-------  326 (347)
                         +..+..|..            .|.+++|+|++ +|++++. +.|++||++..++     +...+..|...       
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~-----~~~~~~~~~~~~~~l~~~  336 (447)
T 3dw8_B          263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENR-----PVETYQVHEYLRSKLCSL  336 (447)
T ss_dssp             CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSS-----CSCCEESCGGGTTTHHHH
T ss_pred             cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcc-----ccceeecccccccccccc
Confidence               788888876            89999999998 8888888 9999999985333     45555555421       


Q ss_pred             --------EEEEEEccCCCEEEEecCCCC
Q 043707          327 --------ITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       327 --------V~~l~~~p~~~~l~sgs~DG~  347 (347)
                              +..++|+|++++|++|+.||.
T Consensus       337 ~~~~~i~~~~~~~~s~~~~~l~s~s~dg~  365 (447)
T 3dw8_B          337 YENDCIFDKFECCWNGSDSVVMTGSYNNF  365 (447)
T ss_dssp             HHTSGGGCCCCEEECTTSSEEEEECSTTE
T ss_pred             ccccccccceEEEECCCCCEEEEeccCCE
Confidence                    345999999999999999984

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.95  E-value=1.7e-25  Score=199.21  Aligned_cols=192  Identities=16%  Similarity=0.284  Sum_probs=164.7

Q ss_pred             eeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEec
Q 043707          115 LIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKV  190 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~  190 (347)
                      ....+..|...|.++.+  ++++|++++.||.|++||..  +....+..|...|.+++|+|++++|++++.||.|++||+
T Consensus       133 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~  212 (337)
T 1gxr_A          133 IKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL  212 (337)
T ss_dssp             EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             eeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEEC
Confidence            45567778888998886  57799999999999999965  446677889999999999999999999999999999999


Q ss_pred             CCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEE
Q 043707          191 SRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL  270 (347)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~  270 (347)
                      ++++....                                 ..+...+.+++|+|++.+|++++.|+.|++||+++++..
T Consensus       213 ~~~~~~~~---------------------------------~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~  259 (337)
T 1gxr_A          213 REGRQLQQ---------------------------------HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY  259 (337)
T ss_dssp             TTTEEEEE---------------------------------EECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE
T ss_pred             CCCceEee---------------------------------ecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE
Confidence            87642211                                 137788999999999999999999999999999988754


Q ss_pred             EEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          271 ESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       271 ~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                       .+..|...|.+++|+|++ +|++++.||.|++||++....      . ....|...|++++|+|++++|++++.||.
T Consensus       260 -~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~------~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  329 (337)
T 1gxr_A          260 -QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS------I-FQSKESSSVLSCDISVDDKYIVTGSGDKK  329 (337)
T ss_dssp             -EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE------E-EEEECSSCEEEEEECTTSCEEEEEETTSC
T ss_pred             -EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeE------E-EEecCCCcEEEEEECCCCCEEEEecCCCe
Confidence             677899999999999987 899999999999999985542      1 23457889999999999999999999984

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.95  E-value=9.4e-26  Score=201.68  Aligned_cols=221  Identities=15%  Similarity=0.148  Sum_probs=172.0

Q ss_pred             eEeeeeccccEEEEee--cCC-EEEEecCCCcEEEEeC-CC-cceeeec--CCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707          116 IGSIVRKEGHIYSLAA--SGD-LLYTGSDSKNIRVWKN-LK-EFSGFKS--NSGLVKAIIITGDSNKIFTGHQDGKIRIW  188 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~--~~~-~l~tg~~dg~I~vwd~-~~-~~~~~~~--h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw  188 (347)
                      +..+..|...|.++.+  +++ +|++|+.||.|++||. .. ....+..  |...|.+++|+| +++|++++.||.|++|
T Consensus        49 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iw  127 (342)
T 1yfq_A           49 LLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVI  127 (342)
T ss_dssp             EEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEE
T ss_pred             ceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEE
Confidence            5566689999999886  588 9999999999999997 53 4566778  999999999999 9999999999999999


Q ss_pred             ecCC---------CCCceeee-------ecccccccceEEeccCCCeEE-EEee-cc---eeeeeecCCCeeEEEEcC-C
Q 043707          189 KVSR---------KNPSVHKR-------VGSLPTFKDYVKSSVNPKNYV-EVRR-NR---NVLKIRHYDAVSCLSLNA-E  246 (347)
Q Consensus       189 d~~~---------~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~-~~---~~~~~~h~~~V~~l~~~~-~  246 (347)
                      |+++         .+......       +...+..  ++....+....+ ++.. ..   ......|...|.+++|+| +
T Consensus       128 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~  205 (342)
T 1yfq_A          128 DPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKE  205 (342)
T ss_dssp             CHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGG
T ss_pred             cccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCC
Confidence            9986         44322111       1111111  222222222222 2222 11   123445788999999999 9


Q ss_pred             CCEEEEEeCCCcEEEEeCCCC------EEEEEEecCCC---------cEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCc
Q 043707          247 QGLLYSGSWDKTLKVWRISDC------KCLESINAHDD---------AINSVVAGFDS-LVFTGSADGTVKVWRRELQGK  310 (347)
Q Consensus       247 ~~~l~s~s~dg~i~vwdl~~~------~~~~~~~~h~~---------~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~  310 (347)
                      +.+|++++.||.|++|+++..      +.+..++.|..         .|.+++|+|++ +|++++.||.|++||++... 
T Consensus       206 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-  284 (342)
T 1yfq_A          206 QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK-  284 (342)
T ss_dssp             GCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE-
T ss_pred             CCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh-
Confidence            999999999999999999887      77888888865         99999999987 89999999999999997543 


Q ss_pred             cceeeehhhhhcc-CCcEEEEEEccCCCEEEEecCCCC
Q 043707          311 GTKHFLAQVLLKQ-ENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       311 ~~~~~~~~~~~~h-~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                           +...+..| ...|++++  |++++|++|+.||+
T Consensus       285 -----~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          285 -----KIKNFAKFNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             -----EEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             -----HhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence                 45667787 99999999  99999999999984

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.3e-26  Score=212.80  Aligned_cols=201  Identities=15%  Similarity=0.237  Sum_probs=167.1

Q ss_pred             eeEeeeeccccEEEEeec---CCEEEEecCCCcEEEEeCCCcc-----------eeeecCCCCeeEEEEeCC-CCEEEEE
Q 043707          115 LIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLKEF-----------SGFKSNSGLVKAIIITGD-SNKIFTG  179 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~~~~-----------~~~~~h~~~V~~l~~sp~-~~~l~s~  179 (347)
                      .+..+.+|.+.|.++.++   +++|++|+.||.|++||.....           ..+..|...|.+++|+|+ +.+|+++
T Consensus       105 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  184 (416)
T 2pm9_A          105 SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASA  184 (416)
T ss_dssp             EEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEE
T ss_pred             chhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEE
Confidence            677788899999999875   6799999999999999965432           223578999999999998 7899999


Q ss_pred             eCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCC-CEEEEEeCCC-
Q 043707          180 HQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ-GLLYSGSWDK-  257 (347)
Q Consensus       180 ~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~dg-  257 (347)
                      +.||.|++||+++++..........                          ..+|...|.+++|+|++ .+|++++.|+ 
T Consensus       185 ~~dg~v~iwd~~~~~~~~~~~~~~~--------------------------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  238 (416)
T 2pm9_A          185 GSSNFASIWDLKAKKEVIHLSYTSP--------------------------NSGIKQQLSVVEWHPKNSTRVATATGSDN  238 (416)
T ss_dssp             SSSSCEEEEETTTTEEEEEECCCCC--------------------------SSCCCCCEEEEEECSSCTTEEEEEECCSS
T ss_pred             cCCCCEEEEECCCCCcceEEecccc--------------------------ccccCCceEEEEECCCCCCEEEEEECCCC
Confidence            9999999999988653322211100                          01247889999999986 6999999998 


Q ss_pred             --cEEEEeCCCC-EEEEEEe-cCCCcEEEEEeCC-CC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEE
Q 043707          258 --TLKVWRISDC-KCLESIN-AHDDAINSVVAGF-DS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALA  331 (347)
Q Consensus       258 --~i~vwdl~~~-~~~~~~~-~h~~~v~~i~~~~-~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~  331 (347)
                        .|++||++++ +++..+. +|...|.+++|+| ++ +|++++.||.|++||++...      +...+..|...|++++
T Consensus       239 ~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~------~~~~~~~~~~~v~~~~  312 (416)
T 2pm9_A          239 DPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE------QLSQFPARGNWCFKTK  312 (416)
T ss_dssp             SCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCC------EEEEEECSSSCCCCEE
T ss_pred             CceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCc------cceeecCCCCceEEEE
Confidence              9999999986 6778888 8999999999999 65 99999999999999998543      4666778999999999


Q ss_pred             EccCC-CEEEEecCCCC
Q 043707          332 VNQES-AVVYCGSSDGL  347 (347)
Q Consensus       332 ~~p~~-~~l~sgs~DG~  347 (347)
                      |+|++ .+|++++.||.
T Consensus       313 ~s~~~~~~l~s~~~d~~  329 (416)
T 2pm9_A          313 FAPEAPDLFACASFDNK  329 (416)
T ss_dssp             ECTTCTTEEEECCSSSE
T ss_pred             ECCCCCCEEEEEecCCc
Confidence            99999 89999999973

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.94  E-value=3.5e-25  Score=205.44  Aligned_cols=191  Identities=23%  Similarity=0.426  Sum_probs=150.6

Q ss_pred             eeEeeeeccccEEEEeecCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCC
Q 043707          115 LIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSR  192 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~  192 (347)
                      .+..+.+|.+.|.++.+++++|++|+.||.|++||..  +....+.+|...|.+++|+++  .|++|+.||.|++||+++
T Consensus       165 ~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~s~dg~i~vwd~~~  242 (435)
T 1p22_A          165 CKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG--MMVTCSKDRSIAVWDMAS  242 (435)
T ss_dssp             EEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTT--EEEEEETTSCEEEEECSS
T ss_pred             EEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCC--EEEEeeCCCcEEEEeCCC
Confidence            4556667777777777777777777777777777743  345566677777777777543  777777777777777766


Q ss_pred             CCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEE
Q 043707          193 KNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES  272 (347)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~  272 (347)
                      +......                             ....+|...|.+++|  ++.+|++|+.||.|++||+++++++..
T Consensus       243 ~~~~~~~-----------------------------~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~  291 (435)
T 1p22_A          243 PTDITLR-----------------------------RVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRT  291 (435)
T ss_dssp             SSCCEEE-----------------------------EEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CCCceee-----------------------------eEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEE
Confidence            5432111                             122358999999999  678999999999999999999999999


Q ss_pred             EecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          273 INAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       273 ~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      +..|...|.++.+. +.++++|+.||.|++||++.+.      ....+.+|...|.+++|  ++.+|++|+.||+
T Consensus       292 ~~~~~~~v~~~~~~-~~~l~~g~~dg~i~iwd~~~~~------~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~  357 (435)
T 1p22_A          292 LNGHKRGIACLQYR-DRLVVSGSSDNTIRLWDIECGA------CLRVLEGHEELVRCIRF--DNKRIVSGAYDGK  357 (435)
T ss_dssp             EECCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTCC------EEEEECCCSSCEEEEEC--CSSEEEEEETTSC
T ss_pred             EcCCCCcEEEEEeC-CCEEEEEeCCCeEEEEECCCCC------EEEEEeCCcCcEEEEEe--cCCEEEEEeCCCc
Confidence            99999999999994 4599999999999999998543      56677889999999999  7899999999984

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.94  E-value=2.1e-25  Score=198.81  Aligned_cols=195  Identities=14%  Similarity=0.272  Sum_probs=150.3

Q ss_pred             eeEeeeeccccEEEEeec----CCEEEEecCCCcEEEEeCCC-----------cceeeecCCCCeeEEEEeCC--CCEEE
Q 043707          115 LIGSIVRKEGHIYSLAAS----GDLLYTGSDSKNIRVWKNLK-----------EFSGFKSNSGLVKAIIITGD--SNKIF  177 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~~----~~~l~tg~~dg~I~vwd~~~-----------~~~~~~~h~~~V~~l~~sp~--~~~l~  177 (347)
                      ++..+.+|.+.|.+++++    +++|++|+.||.|++||...           ....+..|...|.+++|+|+  +.+|+
T Consensus        49 ~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  128 (351)
T 3f3f_A           49 LSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLA  128 (351)
T ss_dssp             EEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEE
T ss_pred             ecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEE
Confidence            566778899999999974    78999999999999999543           25677889999999999998  99999


Q ss_pred             EEeCCCcEEEEecCCCCCceeeeec---------------------cccc---ccceEEeccCCCeEEEEeecce----e
Q 043707          178 TGHQDGKIRIWKVSRKNPSVHKRVG---------------------SLPT---FKDYVKSSVNPKNYVEVRRNRN----V  229 (347)
Q Consensus       178 s~~~Dg~I~vwd~~~~~~~~~~~~~---------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~----~  229 (347)
                      +++.||.|++||+++++........                     ..|.   ...++....+....+.......    .
T Consensus       129 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  208 (351)
T 3f3f_A          129 CLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAA  208 (351)
T ss_dssp             EEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEE
T ss_pred             EecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeee
Confidence            9999999999999887643322110                     0010   1122222222222222222221    2


Q ss_pred             eeeecCCCeeEEEEcCCC----CEEEEEeCCCcEEEEeCCCC--------------------------------------
Q 043707          230 LKIRHYDAVSCLSLNAEQ----GLLYSGSWDKTLKVWRISDC--------------------------------------  267 (347)
Q Consensus       230 ~~~~h~~~V~~l~~~~~~----~~l~s~s~dg~i~vwdl~~~--------------------------------------  267 (347)
                      ...+|...|++++|+|++    .+|++++.||.|++||++.+                                      
T Consensus       209 ~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (351)
T 3f3f_A          209 KLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKA  288 (351)
T ss_dssp             ECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------------------------------
T ss_pred             ecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceee
Confidence            233689999999999998    89999999999999999865                                      


Q ss_pred             --------EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCC
Q 043707          268 --------KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQG  309 (347)
Q Consensus       268 --------~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~  309 (347)
                              +++..+.+|...|++++|+|++ +|++++.||.|++||+...+
T Consensus       289 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          289 ELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             --CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred             eecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence                    6778888999999999999998 89999999999999998544

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.94  E-value=5.7e-25  Score=193.75  Aligned_cols=195  Identities=15%  Similarity=0.252  Sum_probs=145.9

Q ss_pred             ceeEeeeeccccEEEEeec----CCEEEEecCCCcEEEEeCCC----cceeeecCCCCeeEEEEeCC--CCEEEEEeCCC
Q 043707          114 GLIGSIVRKEGHIYSLAAS----GDLLYTGSDSKNIRVWKNLK----EFSGFKSNSGLVKAIIITGD--SNKIFTGHQDG  183 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~~----~~~l~tg~~dg~I~vwd~~~----~~~~~~~h~~~V~~l~~sp~--~~~l~s~~~Dg  183 (347)
                      .++.++.+|++.|++++++    +++|++|+.||+|+|||...    ....+..|...|.+++|+|+  +.+|++|+.||
T Consensus        44 ~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~  123 (297)
T 2pm7_B           44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDG  123 (297)
T ss_dssp             CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCC
Confidence            3567889999999999974    68999999999999999653    34567789999999999997  88999999999


Q ss_pred             cEEEEecCCCCCceeee----------eccccc-------------ccceEEeccCCCe-EEEEeecc-----eeeeeec
Q 043707          184 KIRIWKVSRKNPSVHKR----------VGSLPT-------------FKDYVKSSVNPKN-YVEVRRNR-----NVLKIRH  234 (347)
Q Consensus       184 ~I~vwd~~~~~~~~~~~----------~~~~~~-------------~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~h  234 (347)
                      +|++||++.........          +...|.             ...++....+... ++++....     ...+.+|
T Consensus       124 ~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H  203 (297)
T 2pm7_B          124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH  203 (297)
T ss_dssp             EEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred             cEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC
Confidence            99999998763211111          111111             1123333334332 23333322     1234579


Q ss_pred             CCCeeEEEEcCCC---CEEEEEeCCCcEEEEeCCCCE---EEEEE--ecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEc
Q 043707          235 YDAVSCLSLNAEQ---GLLYSGSWDKTLKVWRISDCK---CLESI--NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRR  305 (347)
Q Consensus       235 ~~~V~~l~~~~~~---~~l~s~s~dg~i~vwdl~~~~---~~~~~--~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~  305 (347)
                      ...|.+++|+|++   .+|++++.|++|+|||++..+   ....+  ..|...|.+++|+|++ +|++++.|+.|+||+.
T Consensus       204 ~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~  283 (297)
T 2pm7_B          204 SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (297)
T ss_dssp             SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred             CCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence            9999999999984   899999999999999997642   22233  4678899999999998 8999999999999998


Q ss_pred             ccC
Q 043707          306 ELQ  308 (347)
Q Consensus       306 ~~~  308 (347)
                      ...
T Consensus       284 ~~~  286 (297)
T 2pm7_B          284 NLE  286 (297)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            643

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1e-25  Score=226.63  Aligned_cols=194  Identities=9%  Similarity=0.003  Sum_probs=155.2

Q ss_pred             eeeeccccEEEEeec--CCEEEEecCCCcEEEEeCCCcce-eeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 043707          118 SIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKEFS-GFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKN  194 (347)
Q Consensus       118 ~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~~~~~-~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~  194 (347)
                      ...+|.+.|++++++  +++||+|+.||+|+||+...... ....|...|.+++|+| +++|++++.|++|+|||+++++
T Consensus        12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~   90 (902)
T 2oaj_A           12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK   90 (902)
T ss_dssp             EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS
T ss_pred             cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCc
Confidence            345899999999874  77999999999999999654322 2234788999999999 7799999999999999998875


Q ss_pred             CceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEE----
Q 043707          195 PSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL----  270 (347)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~----  270 (347)
                      .....                                 .|...|++++|+|++.+|++|+.||+|++||++++++.    
T Consensus        91 ~~~~~---------------------------------~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i  137 (902)
T 2oaj_A           91 VLTTV---------------------------------FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKL  137 (902)
T ss_dssp             EEEEE---------------------------------ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEE
T ss_pred             EEEEE---------------------------------cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccccee
Confidence            32111                                 26678999999999999999999999999999988764    


Q ss_pred             -------EEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeeh-------------hhhhccCCcEE
Q 043707          271 -------ESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLA-------------QVLLKQENAIT  328 (347)
Q Consensus       271 -------~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~-------------~~~~~h~~~V~  328 (347)
                             ..+++|.+.|.+++|+|++  .|++|+.||.| +||++..... .....             .....|...|+
T Consensus       138 ~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~h~~~V~  215 (902)
T 2oaj_A          138 DNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIK-QSFIYELPPFAPGGDFSEKTNEKRTPKVI  215 (902)
T ss_dssp             CCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEE-EEECCCBCTTCCCSTTCCCTTSCBCCCEE
T ss_pred             ccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceE-EEEecccCCcCCCcccccccccccCCCeE
Confidence                   2235688999999999973  89999999999 9999854320 00000             01233567899


Q ss_pred             EEEEccCCCEEEEecCCCC
Q 043707          329 ALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       329 ~l~~~p~~~~l~sgs~DG~  347 (347)
                      +++|+|+|++|++|+.||+
T Consensus       216 ~v~fspdg~~lasgs~Dg~  234 (902)
T 2oaj_A          216 QSLYHPNSLHIITIHEDNS  234 (902)
T ss_dssp             EEEECTTSSEEEEEETTCC
T ss_pred             EEEEcCCCCEEEEEECCCe
Confidence            9999999999999999985

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.94  E-value=3.2e-25  Score=220.91  Aligned_cols=228  Identities=18%  Similarity=0.245  Sum_probs=180.7

Q ss_pred             ceeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707          114 GLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK  189 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd  189 (347)
                      .+.+.+.+|.+.|.+++++  +.+|++|+.||.|+|||..  +....+..|.+.|.+++|+|++++|++|+.||.|++||
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~   83 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            3467889999999999875  7799999999999999964  45678889999999999999999999999999999999


Q ss_pred             cCCCCCceeee--------ecccccccceEEeccCCCeEEEE-eec--ceeeeeecCCCeeEEEEcC-CCCEEEEEeCCC
Q 043707          190 VSRKNPSVHKR--------VGSLPTFKDYVKSSVNPKNYVEV-RRN--RNVLKIRHYDAVSCLSLNA-EQGLLYSGSWDK  257 (347)
Q Consensus       190 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg  257 (347)
                      +.+++......        +...+....++....++...+.. ...  ......+|...|.+++|+| ++..|++++.||
T Consensus        84 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg  163 (814)
T 3mkq_A           84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR  163 (814)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS
T ss_pred             CCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCC
Confidence            99886533222        11122222333333332222221 112  1234456899999999999 889999999999


Q ss_pred             cEEEEeCCCCEEEEEEecCC-CcEEEEEeCC--CC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEc
Q 043707          258 TLKVWRISDCKCLESINAHD-DAINSVVAGF--DS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVN  333 (347)
Q Consensus       258 ~i~vwdl~~~~~~~~~~~h~-~~v~~i~~~~--~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~  333 (347)
                      +|++||+++++....+..+. ..+.++.|+|  ++ +|++++.||.|++||++...      ....+..|...|++++|+
T Consensus       164 ~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~------~~~~~~~~~~~v~~~~~~  237 (814)
T 3mkq_A          164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS------CVATLEGHMSNVSFAVFH  237 (814)
T ss_dssp             EEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE------EEEEEECCSSCEEEEEEC
T ss_pred             eEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc------EEEEEcCCCCCEEEEEEc
Confidence            99999999888887777665 8899999998  66 99999999999999997433      456677899999999999


Q ss_pred             cCCCEEEEecCCCC
Q 043707          334 QESAVVYCGSSDGL  347 (347)
Q Consensus       334 p~~~~l~sgs~DG~  347 (347)
                      |++++|++++.||.
T Consensus       238 ~~~~~l~~~~~dg~  251 (814)
T 3mkq_A          238 PTLPIIISGSEDGT  251 (814)
T ss_dssp             SSSSEEEEEETTSC
T ss_pred             CCCCEEEEEeCCCe
Confidence            99999999999984

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.94  E-value=2.6e-25  Score=200.26  Aligned_cols=190  Identities=16%  Similarity=0.220  Sum_probs=156.5

Q ss_pred             eeeeccccEEEEeecC------CEEEEecCCCcEEEEeCC--Ccceeeec-----CCCCeeEEEEeCC----CCEEEEEe
Q 043707          118 SIVRKEGHIYSLAASG------DLLYTGSDSKNIRVWKNL--KEFSGFKS-----NSGLVKAIIITGD----SNKIFTGH  180 (347)
Q Consensus       118 ~l~~h~~~V~~l~~~~------~~l~tg~~dg~I~vwd~~--~~~~~~~~-----h~~~V~~l~~sp~----~~~l~s~~  180 (347)
                      ...+|.+.|++++++.      .++++++.++.|++||..  +.+..+..     |...|.+++|+|+    +++|++|+
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            3447999999999872      356666667799999965  23334433     5678999999998    67999999


Q ss_pred             CCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC-CCCEEEEEeCCCcE
Q 043707          181 QDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTL  259 (347)
Q Consensus       181 ~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i  259 (347)
                      .||.|++||+.+++.....                                .+|...|.+++|+| ++.+|++++.||.|
T Consensus        93 ~dg~i~v~d~~~~~~~~~~--------------------------------~~~~~~i~~~~~~~~~~~~l~s~~~dg~i  140 (366)
T 3k26_A           93 SRGIIRIINPITMQCIKHY--------------------------------VGHGNAINELKFHPRDPNLLLSVSKDHAL  140 (366)
T ss_dssp             TTCEEEEECTTTCCEEEEE--------------------------------ESCCSCEEEEEECSSCTTEEEEEETTSCE
T ss_pred             CCCEEEEEEchhceEeeee--------------------------------cCCCCcEEEEEECCCCCCEEEEEeCCCeE
Confidence            9999999999877532211                                24899999999999 89999999999999


Q ss_pred             EEEeCCCCEEEEEE---ecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhh--------------
Q 043707          260 KVWRISDCKCLESI---NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLL--------------  321 (347)
Q Consensus       260 ~vwdl~~~~~~~~~---~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~--------------  321 (347)
                      ++||+++++.+..+   ..|...|.+++|+|++ +|++++.||.|++||++...      ....+.              
T Consensus       141 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~~~~~~~~~  214 (366)
T 3k26_A          141 RLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKR------MMNAIKESYDYNPNKTNRPF  214 (366)
T ss_dssp             EEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHH------HHHHHHHHHTCCGGGCSSCC
T ss_pred             EEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCc------cccccceeEEecCCCCcccc
Confidence            99999999999998   6899999999999987 99999999999999997432      222222              


Q ss_pred             --------------ccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          322 --------------KQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       322 --------------~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                                    .|...|.+++|+  +++|++++.||.
T Consensus       215 ~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~  252 (366)
T 3k26_A          215 ISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENA  252 (366)
T ss_dssp             CCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSE
T ss_pred             cceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCE
Confidence                          389999999999  789999999873

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=6.9e-26  Score=203.62  Aligned_cols=187  Identities=10%  Similarity=0.031  Sum_probs=142.1

Q ss_pred             ccEEEEeecCCEEEEecCCCcEEEEeCCCc-----------ceeee-cCCCCeeEEEEeC--CCCEEEEEeCCCcEEEEe
Q 043707          124 GHIYSLAASGDLLYTGSDSKNIRVWKNLKE-----------FSGFK-SNSGLVKAIIITG--DSNKIFTGHQDGKIRIWK  189 (347)
Q Consensus       124 ~~V~~l~~~~~~l~tg~~dg~I~vwd~~~~-----------~~~~~-~h~~~V~~l~~sp--~~~~l~s~~~Dg~I~vwd  189 (347)
                      +.|.++.+... +++|+.|++|++|+....           +..+. .|.+.|.+++|+|  ++++|++|+.||+|++||
T Consensus        77 ~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd  155 (343)
T 3lrv_A           77 PNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQS  155 (343)
T ss_dssp             ECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEE
T ss_pred             CCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEE
Confidence            34445555555 999999999999975422           22222 5668899999999  999999999999999999


Q ss_pred             cCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEE
Q 043707          190 VSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC  269 (347)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~  269 (347)
                      +++++......                               ..|...|.+++|+|++.+|++|+.||.|++||+++++.
T Consensus       156 ~~~~~~~~~~~-------------------------------~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~  204 (343)
T 3lrv_A          156 YEDDSQYIVHS-------------------------------AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQ  204 (343)
T ss_dssp             SSSSCEEEEEC-------------------------------CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTS
T ss_pred             CCCCcEEEEEe-------------------------------cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCC
Confidence            99876421111                               12566799999999999999999999999999999988


Q ss_pred             E-EEEec-CCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcE--EEEEEccCCCEEEEecC
Q 043707          270 L-ESINA-HDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAI--TALAVNQESAVVYCGSS  344 (347)
Q Consensus       270 ~-~~~~~-h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V--~~l~~~p~~~~l~sgs~  344 (347)
                      + ..+.. |...|.+++|+|++ +|++++ |+.|++||++.....   .....+..|...+  .+++|+|++++|++++.
T Consensus       205 ~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~  280 (343)
T 3lrv_A          205 ASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGT---LAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSN  280 (343)
T ss_dssp             CCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTC---BSSCCCBC-----CCEEEEECTTSSEEEEEET
T ss_pred             CccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcc---eeecccccccccccceEEEECCCCCEEEEecC
Confidence            7 88888 99999999999998 788888 559999999865320   0112222233344  46999999999999876


Q ss_pred             -CC
Q 043707          345 -DG  346 (347)
Q Consensus       345 -DG  346 (347)
                       |+
T Consensus       281 ~d~  283 (343)
T 3lrv_A          281 ESN  283 (343)
T ss_dssp             TTT
T ss_pred             CCC
Confidence             64

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.94  E-value=8.9e-25  Score=200.58  Aligned_cols=191  Identities=16%  Similarity=0.211  Sum_probs=158.9

Q ss_pred             eEeeee-ccccEEEEee--cCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEec
Q 043707          116 IGSIVR-KEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKV  190 (347)
Q Consensus       116 i~~l~~-h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~  190 (347)
                      ...+.. |.+.|.++++  ++++|++|+.||.|++||..  +....+.+|...|.+++|++  ++|++|+.||.|++||+
T Consensus       126 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~i~d~  203 (401)
T 4aez_A          126 SALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR--HVLSSGSRSGAIHHHDV  203 (401)
T ss_dssp             EEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEET
T ss_pred             eEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECC--CEEEEEcCCCCEEEEec
Confidence            333433 7889999987  57799999999999999965  45777889999999999954  59999999999999999


Q ss_pred             CCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEE
Q 043707          191 SRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL  270 (347)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~  270 (347)
                      +........                               ..+|...|.+++|+|++.+|++++.|+.|++||+++++++
T Consensus       204 ~~~~~~~~~-------------------------------~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~  252 (401)
T 4aez_A          204 RIANHQIGT-------------------------------LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPK  252 (401)
T ss_dssp             TSSSCEEEE-------------------------------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEE
T ss_pred             ccCcceeeE-------------------------------EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCcc
Confidence            854322111                               2248999999999999999999999999999999999999


Q ss_pred             EEEecCCCcEEEEEeCCCC--EEEEEe--CCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEE--ecC
Q 043707          271 ESINAHDDAINSVVAGFDS--LVFTGS--ADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYC--GSS  344 (347)
Q Consensus       271 ~~~~~h~~~v~~i~~~~~~--~l~s~~--~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s--gs~  344 (347)
                      ..+..|...|.+++|+|++  ++++++  .|+.|++||++...      +...+ .+...|.+++|+|++++|++  |+.
T Consensus       253 ~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~------~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~  325 (401)
T 4aez_A          253 FTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA------RVNTV-DAGSQVTSLIWSPHSKEIMSTHGFP  325 (401)
T ss_dssp             EEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC------EEEEE-ECSSCEEEEEECSSSSEEEEEECTT
T ss_pred             EEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC------EEEEE-eCCCcEEEEEECCCCCeEEEEeecC
Confidence            9999999999999999976  777765  79999999998543      23333 36678999999999999999  447


Q ss_pred             CC
Q 043707          345 DG  346 (347)
Q Consensus       345 DG  346 (347)
                      ||
T Consensus       326 dg  327 (401)
T 4aez_A          326 DN  327 (401)
T ss_dssp             TC
T ss_pred             CC
Confidence            76

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.94  E-value=3.4e-25  Score=203.33  Aligned_cols=187  Identities=19%  Similarity=0.225  Sum_probs=152.7

Q ss_pred             EeecCC---EEEEecCCCcEEEEeCCC------cceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCcee
Q 043707          129 LAASGD---LLYTGSDSKNIRVWKNLK------EFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVH  198 (347)
Q Consensus       129 l~~~~~---~l~tg~~dg~I~vwd~~~------~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~  198 (347)
                      +.++++   ++++|+.||.|+||+..+      ....+.+|.+.|.+++|+| ++++|++|+.||+|+|||+.++.....
T Consensus        40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~  119 (402)
T 2aq5_A           40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP  119 (402)
T ss_dssp             EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSC
T ss_pred             EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccc
Confidence            445554   344578999999999643      3556788999999999999 999999999999999999988743210


Q ss_pred             eeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCEEEEEE--ec
Q 043707          199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ-GLLYSGSWDKTLKVWRISDCKCLESI--NA  275 (347)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~dg~i~vwdl~~~~~~~~~--~~  275 (347)
                      ..                         .......+|...|.+++|+|++ .+|++++.||+|++||+++++++..+  ..
T Consensus       120 ~~-------------------------~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  174 (402)
T 2aq5_A          120 LR-------------------------EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDV  174 (402)
T ss_dssp             BC-------------------------SCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTT
T ss_pred             cC-------------------------CceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCC
Confidence            00                         0111223599999999999997 79999999999999999999999999  88


Q ss_pred             CCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhh-hccCCc-EEEEEEccCCCEEEEe---cCCC
Q 043707          276 HDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVL-LKQENA-ITALAVNQESAVVYCG---SSDG  346 (347)
Q Consensus       276 h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~-~~h~~~-V~~l~~~p~~~~l~sg---s~DG  346 (347)
                      |...|.+++|+|++ +|++++.||.|++||++...      ....+ ..|... +.+++|+|++++|++|   +.||
T Consensus       175 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~  245 (402)
T 2aq5_A          175 HPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT------VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSER  245 (402)
T ss_dssp             CCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE------EEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCE
T ss_pred             CCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc------eeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCc
Confidence            99999999999998 89999999999999998543      34444 567665 8999999999999998   6665

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.94  E-value=4.3e-25  Score=199.60  Aligned_cols=232  Identities=12%  Similarity=0.102  Sum_probs=154.2

Q ss_pred             eeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEE-EEEeCCCcEEEEecC
Q 043707          115 LIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKI-FTGHQDGKIRIWKVS  191 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~~~Dg~I~vwd~~  191 (347)
                      .+..+..|.+.|+++++  +|++|++|+.++ ++||+..........+...+..+++.++++.+ ++++.|++|++||+.
T Consensus        11 ~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~   89 (355)
T 3vu4_A           11 PIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDV   89 (355)
T ss_dssp             --------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETT
T ss_pred             CccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECC
Confidence            35566788889988886  477899888775 78998664433333333457888888877776 567788899999988


Q ss_pred             CCCCceeeeecc-------cc-----------------cc----c-------------ceEEe---ccCCC-eEEEEeec
Q 043707          192 RKNPSVHKRVGS-------LP-----------------TF----K-------------DYVKS---SVNPK-NYVEVRRN  226 (347)
Q Consensus       192 ~~~~~~~~~~~~-------~~-----------------~~----~-------------~~~~~---~~~~~-~~~~~~~~  226 (347)
                      +++.........       .+                 ..    .             .++..   ..++. .++++...
T Consensus        90 ~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~  169 (355)
T 3vu4_A           90 KKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSS  169 (355)
T ss_dssp             TTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC-
T ss_pred             CCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCC
Confidence            775432211100       00                 00    0             01111   11111 11222221


Q ss_pred             c-----------------eeeeeecCCCeeEEEEcCCCCEEEEEeCCCc-EEEEeCCCCEEEEEEe-c-CCCcEEEEEeC
Q 043707          227 R-----------------NVLKIRHYDAVSCLSLNAEQGLLYSGSWDKT-LKVWRISDCKCLESIN-A-HDDAINSVVAG  286 (347)
Q Consensus       227 ~-----------------~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~-i~vwdl~~~~~~~~~~-~-h~~~v~~i~~~  286 (347)
                      .                 .....+|...|++++|+|++.+|++|+.|++ |+|||+++++++..+. + |...|.+++|+
T Consensus       170 ~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s  249 (355)
T 3vu4_A          170 GSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWS  249 (355)
T ss_dssp             -----------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEEC
T ss_pred             CccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEEC
Confidence            1                 3445679999999999999999999999999 9999999999999998 5 99999999999


Q ss_pred             CCC-EEEEEeCCCcEEEEEcccCCccceeeehh-----------------hhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          287 FDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQ-----------------VLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       287 ~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~-----------------~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      |++ +|++++.|++|++||++.........+..                 ....+......++|++++++|++++.||.
T Consensus       250 ~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~  328 (355)
T 3vu4_A          250 TDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRM  328 (355)
T ss_dssp             TTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTE
T ss_pred             CCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCe
Confidence            998 99999999999999997543211111100                 00111223467999999999999999983

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.94  E-value=6.9e-25  Score=194.98  Aligned_cols=193  Identities=16%  Similarity=0.279  Sum_probs=143.9

Q ss_pred             eeEeeeeccccEEEEeec----CCEEEEecCCCcEEEEeCCC----cceeeecCCCCeeEEEEeCC--CCEEEEEeCCCc
Q 043707          115 LIGSIVRKEGHIYSLAAS----GDLLYTGSDSKNIRVWKNLK----EFSGFKSNSGLVKAIIITGD--SNKIFTGHQDGK  184 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~~----~~~l~tg~~dg~I~vwd~~~----~~~~~~~h~~~V~~l~~sp~--~~~l~s~~~Dg~  184 (347)
                      ++..+.+|.+.|+++++.    +++|++|+.|++|++||...    ....+.+|...|.+++|+|+  +.+|++|+.||+
T Consensus        49 ~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~  128 (316)
T 3bg1_A           49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA  128 (316)
T ss_dssp             EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSC
T ss_pred             EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCC
Confidence            467788999999999974    68999999999999999753    34567789999999999997  789999999999


Q ss_pred             EEEEecCCCCCcee-e----------eeccccc-----------------ccceEEeccCCC-eEEEEeec----ceeee
Q 043707          185 IRIWKVSRKNPSVH-K----------RVGSLPT-----------------FKDYVKSSVNPK-NYVEVRRN----RNVLK  231 (347)
Q Consensus       185 I~vwd~~~~~~~~~-~----------~~~~~~~-----------------~~~~~~~~~~~~-~~~~~~~~----~~~~~  231 (347)
                      |++||++....... .          .+...|.                 ...++....+.. .+++....    ....+
T Consensus       129 i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l  208 (316)
T 3bg1_A          129 ISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL  208 (316)
T ss_dssp             EEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC
T ss_pred             EEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec
Confidence            99999986532100 0          0000111                 012222233332 23333322    12234


Q ss_pred             eecCCCeeEEEEcCCC----CEEEEEeCCCcEEEEeCCCC---E-EEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEE
Q 043707          232 IRHYDAVSCLSLNAEQ----GLLYSGSWDKTLKVWRISDC---K-CLESINAHDDAINSVVAGFDS-LVFTGSADGTVKV  302 (347)
Q Consensus       232 ~~h~~~V~~l~~~~~~----~~l~s~s~dg~i~vwdl~~~---~-~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~v  302 (347)
                      .+|...|.+++|+|++    .+|++++.|++|+|||+++.   + ....+..|...|.+++|+|++ +|++++.|++|++
T Consensus       209 ~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~l  288 (316)
T 3bg1_A          209 EAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTL  288 (316)
T ss_dssp             BCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEE
T ss_pred             ccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEE
Confidence            5799999999999986    89999999999999999762   1 233456789999999999998 8999999999999


Q ss_pred             EEccc
Q 043707          303 WRREL  307 (347)
Q Consensus       303 wd~~~  307 (347)
                      |+...
T Consensus       289 w~~~~  293 (316)
T 3bg1_A          289 WKESV  293 (316)
T ss_dssp             EEECT
T ss_pred             EEECC
Confidence            99863

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.94  E-value=2.2e-24  Score=201.37  Aligned_cols=224  Identities=17%  Similarity=0.331  Sum_probs=171.0

Q ss_pred             ceeEeeeeccccEEEEeecC-CEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEe--CCCCEEEEEeCCCcEEEE
Q 043707          114 GLIGSIVRKEGHIYSLAASG-DLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIIT--GDSNKIFTGHQDGKIRIW  188 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~~~-~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~s--p~~~~l~s~~~Dg~I~vw  188 (347)
                      ..+..+.+|.+.|+++.+.. .+|++|+.||+|++||..  +....+.+|.+.|.+++|+  +++.+|++|+.||.|++|
T Consensus       153 ~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vw  232 (464)
T 3v7d_B          153 KFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW  232 (464)
T ss_dssp             EEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEE
T ss_pred             cEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEe
Confidence            46788889999999999863 499999999999999965  4567788899999999998  577899999999999999


Q ss_pred             ecCCCCCceeee---------------------ecc-------c-ccccceEEeccCCCeEE-EEeecce-eeeeecCCC
Q 043707          189 KVSRKNPSVHKR---------------------VGS-------L-PTFKDYVKSSVNPKNYV-EVRRNRN-VLKIRHYDA  237 (347)
Q Consensus       189 d~~~~~~~~~~~---------------------~~~-------~-~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~h~~~  237 (347)
                      |+++........                     ...       + +....++....+....+ ++..... ....+|...
T Consensus       233 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~  312 (464)
T 3v7d_B          233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR  312 (464)
T ss_dssp             ECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             eCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCC
Confidence            998875432110                     000       0 00111222222222221 2122222 223468999


Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeeh
Q 043707          238 VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLA  317 (347)
Q Consensus       238 V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~  317 (347)
                      |.+++|+|++.+|++|+.||+|++||+++++++..+.+|...|.++.++ +.+|++++.||.|++||++....      .
T Consensus       313 v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~------~  385 (464)
T 3v7d_B          313 IYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS-DKFLVSAAADGSIRGWDANDYSR------K  385 (464)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC-SSEEEEEETTSEEEEEETTTCCE------E
T ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc-CCEEEEEeCCCcEEEEECCCCce------e
Confidence            9999999999999999999999999999999999999999999999997 46999999999999999985432      1


Q ss_pred             hhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          318 QVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       318 ~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                       ....|...+..++|++++++|++|+ ||
T Consensus       386 -~~~~~~~~~~~~~~~~~~~~l~~~~-dg  412 (464)
T 3v7d_B          386 -FSYHHTNLSAITTFYVSDNILVSGS-EN  412 (464)
T ss_dssp             -EEEECTTCCCEEEEEECSSEEEEEE-TT
T ss_pred             -eeecCCCCccEEEEEeCCCEEEEec-CC
Confidence             1123566788899999999999998 65

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.94  E-value=4e-25  Score=197.58  Aligned_cols=228  Identities=14%  Similarity=0.091  Sum_probs=165.7

Q ss_pred             EeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCC-c----ceeeecCCCCeeEEEEeCCCC-EEEEEeCCCcEEEE
Q 043707          117 GSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK-E----FSGFKSNSGLVKAIIITGDSN-KIFTGHQDGKIRIW  188 (347)
Q Consensus       117 ~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~-~----~~~~~~h~~~V~~l~~sp~~~-~l~s~~~Dg~I~vw  188 (347)
                      ....+|.+.|+++++  ++++|++|+.||.|++|+... .    ...+..|...|.+++|+|+++ +|++|+.||.|++|
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w   84 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence            344579999999886  578999999999999999542 2    456678999999999999999 99999999999999


Q ss_pred             ec-CCCCCceeee---------ecccccccceEEeccCCCeE-EEEee---------cceeeeeecCCCeeEEEEcCCCC
Q 043707          189 KV-SRKNPSVHKR---------VGSLPTFKDYVKSSVNPKNY-VEVRR---------NRNVLKIRHYDAVSCLSLNAEQG  248 (347)
Q Consensus       189 d~-~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~-~~~~~---------~~~~~~~~h~~~V~~l~~~~~~~  248 (347)
                      |+ .+++......         +...+ ...++....+.... ++...         ........|...|.+++|++++ 
T Consensus        85 d~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-  162 (342)
T 1yfq_A           85 DLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR-  162 (342)
T ss_dssp             CSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE-
T ss_pred             EeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc-
Confidence            99 7764311111         11112 12222222222111 11122         2223334588999999999887 


Q ss_pred             EEEEEeCCCcEEEEeCCC-CE--EEEEEecCCCcEEEEEeCC-CC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhcc
Q 043707          249 LLYSGSWDKTLKVWRISD-CK--CLESINAHDDAINSVVAGF-DS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQ  323 (347)
Q Consensus       249 ~l~s~s~dg~i~vwdl~~-~~--~~~~~~~h~~~v~~i~~~~-~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h  323 (347)
                       +++++.|+.|++||+++ ++  .......|...|.+++|+| ++ +|++++.||.|++|+++..+..........+..|
T Consensus       163 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  241 (342)
T 1yfq_A          163 -LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH  241 (342)
T ss_dssp             -EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred             -EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecc
Confidence             99999999999999988 54  3334456888999999999 76 9999999999999999865100001134445555


Q ss_pred             C---------CcEEEEEEccCCCEEEEecCCCC
Q 043707          324 E---------NAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       324 ~---------~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      .         ..|++++|+|++++|++|+.||.
T Consensus       242 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  274 (342)
T 1yfq_A          242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI  274 (342)
T ss_dssp             CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC
T ss_pred             cccccccccceeEEEEEEcCCCCEEEEecCCce
Confidence            4         49999999999999999999984

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.7e-25  Score=208.61  Aligned_cols=193  Identities=13%  Similarity=0.148  Sum_probs=152.9

Q ss_pred             eccccEEEEee--cCCEEEEecCCCcEEEEeCCCcceeeecCCC-----CeeEEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 043707          121 RKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKEFSGFKSNSG-----LVKAIIITGDSNKIFTGHQDGKIRIWKVSRK  193 (347)
Q Consensus       121 ~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~~~~~~~~h~~-----~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~  193 (347)
                      .|+..|++++|  +|++||+++.||.|+|||....+..+. |..     .|.+++|+|+|++|++|+.||+|+|||+.++
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~  161 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKN  161 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTEEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCC
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCceeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCC
Confidence            45788998886  578999999999999999766666666 665     4999999999999999999999999999887


Q ss_pred             CCcee--eeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEE--
Q 043707          194 NPSVH--KRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC--  269 (347)
Q Consensus       194 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~--  269 (347)
                      .....  ..+..+.                       ....+|...|.+++|+|++  +++++.|+++++||+..++.  
T Consensus       162 ~l~~~~~i~l~ti~-----------------------~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~  216 (588)
T 2j04_A          162 SENTPEFYFESSIR-----------------------LSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQP  216 (588)
T ss_dssp             TTTCCCCEEEEEEE-----------------------CSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCC
T ss_pred             ccccccceeeeeee-----------------------cccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcccc
Confidence            53110  0000000                       0001478899999999998  88888999999999988773  


Q ss_pred             -EEEE-ecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEE--ccCCCEEEEecCC
Q 043707          270 -LESI-NAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAV--NQESAVVYCGSSD  345 (347)
Q Consensus       270 -~~~~-~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~--~p~~~~l~sgs~D  345 (347)
                       ..++ .+|...|.+++|+ +..||+++ +++|++||+..+.      ......+|...|..++|  +|++..|+++++|
T Consensus       217 ~~~tL~~~h~~~V~svaFs-g~~LASa~-~~tIkLWd~~~~~------~~~~~~gh~~~V~~va~~~s~d~~~La~a~ed  288 (588)
T 2j04_A          217 VSRMIQNASRRKITDLKIV-DYKVVLTC-PGYVHKIDLKNYS------ISSLKTGSLENFHIIPLNHEKESTILLMSNKT  288 (588)
T ss_dssp             CEEEEECCCSSCCCCEEEE-TTEEEEEC-SSEEEEEETTTTE------EEEEECSCCSCCCEEEETTCSSCEEEEECSSC
T ss_pred             ceeeecccccCcEEEEEEE-CCEEEEEe-CCeEEEEECCCCe------EEEEEcCCCceEEEEEeeeCCCCCEEEEEcCC
Confidence             3567 4788999999999 67888887 6999999997432      21223379999999999  9999999999998


Q ss_pred             CC
Q 043707          346 GL  347 (347)
Q Consensus       346 G~  347 (347)
                      |+
T Consensus       289 G~  290 (588)
T 2j04_A          289 SY  290 (588)
T ss_dssp             EE
T ss_pred             CC
Confidence            84

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.94  E-value=2e-25  Score=215.07  Aligned_cols=222  Identities=16%  Similarity=0.201  Sum_probs=172.9

Q ss_pred             ceeEeeeeccccEEEEeecCCEEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 043707          114 GLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRK  193 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~  193 (347)
                      ..+..+.+|.+.|.++.+ ++ |++|+.||.|++|+.. .+.  ..|...|.+++| +++..|++++.|+.|++||+...
T Consensus       330 ~~~~~~~~~~~~v~~~~~-~~-l~~~~~dg~i~~w~~~-~~~--~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~  403 (615)
T 1pgu_A          330 EVLKTISGHNKGITALTV-NP-LISGSYDGRIMEWSSS-SMH--QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKH  403 (615)
T ss_dssp             EEEEEECCCSSCEEEEET-TT-TEEEETTSCEEETTTT-EEE--CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEE
T ss_pred             cEEEEEeCCCCCEEEEEe-cC-cEEECCCCeEEEEEch-hhc--CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccC
Confidence            467788899999999999 88 9999999999999987 333  789999999999 66779999999999999998754


Q ss_pred             CCce----------------------------------eeeeccccc----ccceEEecc--CCCe-EEEEeecce--ee
Q 043707          194 NPSV----------------------------------HKRVGSLPT----FKDYVKSSV--NPKN-YVEVRRNRN--VL  230 (347)
Q Consensus       194 ~~~~----------------------------------~~~~~~~~~----~~~~~~~~~--~~~~-~~~~~~~~~--~~  230 (347)
                      +...                                  .........    ...++....  +... +++......  ..
T Consensus       404 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~  483 (615)
T 1pgu_A          404 EFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDL  483 (615)
T ss_dssp             ECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEEC
T ss_pred             cccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccc
Confidence            3100                                  000000000    011222222  2211 111111111  33


Q ss_pred             eeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEec-CCCcEEEEEeCC----------CC-EEEEEeCCC
Q 043707          231 KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA-HDDAINSVVAGF----------DS-LVFTGSADG  298 (347)
Q Consensus       231 ~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~-h~~~v~~i~~~~----------~~-~l~s~~~dg  298 (347)
                      ...|...|.+++|+|++.+|++++.||.|++||+.+++++..+.+ |...|++++|+|          ++ +|++++.||
T Consensus       484 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg  563 (615)
T 1pgu_A          484 KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT  563 (615)
T ss_dssp             SSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTS
T ss_pred             cCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCC
Confidence            346899999999999999999999999999999999999999988 999999999999          77 999999999


Q ss_pred             cEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          299 TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       299 ~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      .|++||+....+     +...+.+|...|++++|+|+++ |++++.||+
T Consensus       564 ~i~iw~~~~~~~-----~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~  606 (615)
T 1pgu_A          564 NIFIYSVKRPMK-----IIKALNAHKDGVNNLLWETPST-LVSSGADAC  606 (615)
T ss_dssp             CEEEEESSCTTC-----CEEETTSSTTCEEEEEEEETTE-EEEEETTSC
T ss_pred             cEEEEECCCCce-----echhhhcCccceEEEEEcCCCC-eEEecCCce
Confidence            999999986533     5667889999999999999999 999999985

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.94  E-value=4.7e-25  Score=204.61  Aligned_cols=195  Identities=19%  Similarity=0.371  Sum_probs=164.6

Q ss_pred             ceeEeeeeccccEEEEeecCCEEEEecCCCcEEEEeCCCc--c---eeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707          114 GLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKE--F---SGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW  188 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~~~--~---~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw  188 (347)
                      ..+..+.+|.+.|.++.+++++|++|+.||.|++||....  .   ..+.+|...|.+++|  ++++|++|+.||.|++|
T Consensus       204 ~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vw  281 (435)
T 1p22_A          204 EMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVW  281 (435)
T ss_dssp             CEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEE
T ss_pred             cEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEE
Confidence            4677888999999999999999999999999999996533  2   567789999999999  66799999999999999


Q ss_pred             ecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCE
Q 043707          189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK  268 (347)
Q Consensus       189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~  268 (347)
                      |+++++.....                                .+|...|.+++++  +.+|++|+.||+|++||+++++
T Consensus       282 d~~~~~~~~~~--------------------------------~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~  327 (435)
T 1p22_A          282 NTSTCEFVRTL--------------------------------NGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGA  327 (435)
T ss_dssp             ETTTCCEEEEE--------------------------------ECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCC
T ss_pred             ECCcCcEEEEE--------------------------------cCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCC
Confidence            99887532221                                1488899999994  6899999999999999999999


Q ss_pred             EEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccc---eeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707          269 CLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGT---KHFLAQVLLKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       269 ~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~---~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                      ++..+.+|...|.++.| ...+|++|+.||.|++||++......   .......+.+|...|++++|  ++.+|++|+.|
T Consensus       328 ~~~~~~~h~~~v~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~D  404 (435)
T 1p22_A          328 CLRVLEGHEELVRCIRF-DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHD  404 (435)
T ss_dssp             EEEEECCCSSCEEEEEC-CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSS
T ss_pred             EEEEEeCCcCcEEEEEe-cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCC
Confidence            99999999999999999 34599999999999999997543210   11145567789999999999  68899999999


Q ss_pred             CC
Q 043707          346 GL  347 (347)
Q Consensus       346 G~  347 (347)
                      |+
T Consensus       405 g~  406 (435)
T 1p22_A          405 DT  406 (435)
T ss_dssp             SE
T ss_pred             CE
Confidence            84

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.94  E-value=2.7e-24  Score=214.19  Aligned_cols=227  Identities=17%  Similarity=0.290  Sum_probs=175.6

Q ss_pred             ceeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707          114 GLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK  189 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd  189 (347)
                      ..+..+..|.+.|.++.|  ++++|++|+.||.|++||..  +....+.+|.+.|.+++|+|++++|++++.||.|++||
T Consensus        46 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~  125 (814)
T 3mkq_A           46 VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN  125 (814)
T ss_dssp             EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEE
Confidence            367788889999999886  57899999999999999954  45677889999999999999999999999999999999


Q ss_pred             cCCCCCceeee---------ecccc-cccceEEeccCCCeEE-EEeecce--eeeeecCCCeeEEEEcC--CCCEEEEEe
Q 043707          190 VSRKNPSVHKR---------VGSLP-TFKDYVKSSVNPKNYV-EVRRNRN--VLKIRHYDAVSCLSLNA--EQGLLYSGS  254 (347)
Q Consensus       190 ~~~~~~~~~~~---------~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~h~~~V~~l~~~~--~~~~l~s~s  254 (347)
                      +.++.......         +...| ....++....+....+ +......  .....+...+.+++|+|  ++.+|++++
T Consensus       126 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~  205 (814)
T 3mkq_A          126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS  205 (814)
T ss_dssp             GGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC
T ss_pred             CCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe
Confidence            98763221111         11122 1122222222222111 1111111  22223458899999999  899999999


Q ss_pred             CCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEc
Q 043707          255 WDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVN  333 (347)
Q Consensus       255 ~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~  333 (347)
                      .||.|++||+++++++..+..|...|.+++|+|++ +|++++.||.|++||+....      ....+..|...|.+++|+
T Consensus       206 ~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~------~~~~~~~~~~~v~~~~~~  279 (814)
T 3mkq_A          206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK------VEKTLNVGLERSWCIATH  279 (814)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCS------EEEEECCSSSSEEEEEEC
T ss_pred             CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc------EEEEeecCCCcEEEEEEc
Confidence            99999999999999999999999999999999998 99999999999999997543      456667788899999999


Q ss_pred             cCCC--EEEEecCCC
Q 043707          334 QESA--VVYCGSSDG  346 (347)
Q Consensus       334 p~~~--~l~sgs~DG  346 (347)
                      |++.  ++++++.++
T Consensus       280 ~~~~~~~~~~~~~~~  294 (814)
T 3mkq_A          280 PTGRKNYIASGFDNG  294 (814)
T ss_dssp             TTCGGGEEEEEETTE
T ss_pred             cCCCceEEEEEeCCC
Confidence            9986  577776554

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.94  E-value=4e-25  Score=194.35  Aligned_cols=191  Identities=10%  Similarity=0.027  Sum_probs=141.1

Q ss_pred             eeccccEEEEeecCCEEEEec--CCCcEEEEeC---CCcceeeecCCCCeeEEEEeC---CCCEEEEEeCCCcEEEEecC
Q 043707          120 VRKEGHIYSLAASGDLLYTGS--DSKNIRVWKN---LKEFSGFKSNSGLVKAIIITG---DSNKIFTGHQDGKIRIWKVS  191 (347)
Q Consensus       120 ~~h~~~V~~l~~~~~~l~tg~--~dg~I~vwd~---~~~~~~~~~h~~~V~~l~~sp---~~~~l~s~~~Dg~I~vwd~~  191 (347)
                      .+|...|..+ ..++++.+++  .|+.|++|++   .+.+..+..|...+..++|++   ++..|++|+.|++|+|||++
T Consensus       133 ~g~~~~v~~l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~  211 (356)
T 2w18_A          133 SGNIKAVLGL-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLK  211 (356)
T ss_dssp             EEEEEEEEEE-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETT
T ss_pred             CCCeEEEEec-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECC
Confidence            3455556665 3555666643  6999999996   344667789999999999999   77999999999999999999


Q ss_pred             CCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEE------------EEEeCCCcE
Q 043707          192 RKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLL------------YSGSWDKTL  259 (347)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l------------~s~s~dg~i  259 (347)
                      +++.........                             .+...+.+++|+|++.++            ++|+.|++|
T Consensus       212 TGk~l~tL~g~~-----------------------------~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tI  262 (356)
T 2w18_A          212 TGQLLKKMHIDD-----------------------------SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQL  262 (356)
T ss_dssp             TCCEEEEEECCC--------------------------------CCCEEEEEEETTEEEEEEC------------CCEEE
T ss_pred             CCcEEEEEcCCC-----------------------------cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEE
Confidence            987433322100                             023467788899988776            668889999


Q ss_pred             EEEeCCCCEEEEEE-----ecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEE-EEEEc
Q 043707          260 KVWRISDCKCLESI-----NAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAIT-ALAVN  333 (347)
Q Consensus       260 ~vwdl~~~~~~~~~-----~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~-~l~~~  333 (347)
                      ++||..+++++..+     .+|...+.+..++ ..++++++.|++|+|||+.++.      +.+++.+|...+. .++|+
T Consensus       263 klWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s-g~~lASgS~DgTIkIWDl~tGk------~l~tL~gH~~~vvs~vafS  335 (356)
T 2w18_A          263 IVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK-DHCAAAILTSGTIAIWDLLLGQ------CTALLPPVSDQHWSFVKWS  335 (356)
T ss_dssp             EEEETTTTEEEEEEEECCCTTCCCCEEEEEEE-TTEEEEEETTSCEEEEETTTCS------EEEEECCC--CCCCEEEEC
T ss_pred             EEEECCCCEEEEEEEeeccCCCcceeEccccC-CCEEEEEcCCCcEEEEECCCCc------EEEEecCCCCCeEEEEEEC
Confidence            99999999988766     3666555444443 3388999999999999998554      5677788877655 68999


Q ss_pred             cCCCEEEEecCCCC
Q 043707          334 QESAVVYCGSSDGL  347 (347)
Q Consensus       334 p~~~~l~sgs~DG~  347 (347)
                      |+|++|++|+.||+
T Consensus       336 PDG~~LaSGS~D~T  349 (356)
T 2w18_A          336 GTDSHLLAGQKDGN  349 (356)
T ss_dssp             SSSSEEEEECTTSC
T ss_pred             CCCCEEEEEECCCc
Confidence            99999999999986

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.94  E-value=1.8e-24  Score=225.11  Aligned_cols=226  Identities=15%  Similarity=0.177  Sum_probs=175.7

Q ss_pred             eEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecC
Q 043707          116 IGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVS  191 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~  191 (347)
                      ...+.+|.+.|+++++  ++++|++|+.||+|++||..  +....+.+|.+.|.+++|+|++++|++|+.||.|++||+.
T Consensus       608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~  687 (1249)
T 3sfz_A          608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA  687 (1249)
T ss_dssp             SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence            3467789999999886  57799999999999999965  4567888999999999999999999999999999999999


Q ss_pred             CCCCceeeeec--------ccccccc-eEEe-ccCCCe-EEEEeecc-eeeeeecCCCeeEEEEcCCCCEEEEEeCCCcE
Q 043707          192 RKNPSVHKRVG--------SLPTFKD-YVKS-SVNPKN-YVEVRRNR-NVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTL  259 (347)
Q Consensus       192 ~~~~~~~~~~~--------~~~~~~~-~~~~-~~~~~~-~~~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i  259 (347)
                      +++........        ..+.... ++.. ..+... ++++.... .....+|...|.+++|+|++.+|++++.||+|
T Consensus       688 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v  767 (1249)
T 3sfz_A          688 TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL  767 (1249)
T ss_dssp             TCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEE
T ss_pred             CCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeE
Confidence            88654332211        1111111 1222 222221 12222222 22345799999999999999999999999999


Q ss_pred             EEEeCCCCEEEEEEe-------------------------------------------------------cCCCcEEEEE
Q 043707          260 KVWRISDCKCLESIN-------------------------------------------------------AHDDAINSVV  284 (347)
Q Consensus       260 ~vwdl~~~~~~~~~~-------------------------------------------------------~h~~~v~~i~  284 (347)
                      ++||+++++....+.                                                       +|...|.+++
T Consensus       768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~  847 (1249)
T 3sfz_A          768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD  847 (1249)
T ss_dssp             EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEE
T ss_pred             EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEE
Confidence            999998776554432                                                       5777889999


Q ss_pred             eCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          285 AGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       285 ~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      |+|++ ++++++.||.|++||+....      ....+.+|...|++++|+|++++|++++.||+
T Consensus       848 ~sp~~~~l~~~~~dg~v~vwd~~~~~------~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~  905 (1249)
T 3sfz_A          848 FSPYDHLAVIALSQYCVELWNIDSRL------KVADCRGHLSWVHGVMFSPDGSSFLTASDDQT  905 (1249)
T ss_dssp             ECSSTTEEEEECSSSCEEEEETTTTE------EEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EcCCCCEEEEEeCCCeEEEEEcCCCc------eeeecCCCccceEEEEECCCCCEEEEEeCCCe
Confidence            99987 89999999999999997543      45667789999999999999999999999984

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.94  E-value=1.8e-24  Score=201.19  Aligned_cols=230  Identities=19%  Similarity=0.304  Sum_probs=176.8

Q ss_pred             ccceeEeeeeccccEEEEeecCCEEEEecCCCcEEEEe--CCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707          112 CNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK  189 (347)
Q Consensus       112 ~~~~i~~l~~h~~~V~~l~~~~~~l~tg~~dg~I~vwd--~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd  189 (347)
                      ....+..+.+|...|.++.+++++|++|+.||.|++||  ..+....+.+|...|.+++|  ++++|++|+.||.|++||
T Consensus       188 ~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd  265 (445)
T 2ovr_B          188 TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWD  265 (445)
T ss_dssp             TTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEE
T ss_pred             cCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEE
Confidence            47778899999999999999999999999999999998  88888888999999999999  677999999999999999


Q ss_pred             cCCCCCceeeeeccc-----c-cccceEEeccCCCeEE-EEeecce-eeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 043707          190 VSRKNPSVHKRVGSL-----P-TFKDYVKSSVNPKNYV-EVRRNRN-VLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKV  261 (347)
Q Consensus       190 ~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~v  261 (347)
                      +++++..........     . ....++....+....+ +...... ....+|...+.++.++  +++|++|+.||.|++
T Consensus       266 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~v  343 (445)
T 2ovr_B          266 PETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKI  343 (445)
T ss_dssp             GGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred             CCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEE
Confidence            988765443331111     1 1122223333322222 2222222 2234688888888875  679999999999999


Q ss_pred             EeCCCCEEEEEEec---CCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCE
Q 043707          262 WRISDCKCLESINA---HDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAV  338 (347)
Q Consensus       262 wdl~~~~~~~~~~~---h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~  338 (347)
                      ||+++++++..+..   |...|.+++|+ ..+|++|+.||.|++||+..+... ..........|...|++++|+|++.+
T Consensus       344 wd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~  421 (445)
T 2ovr_B          344 WDIKTGQCLQTLQGPNKHQSAVTCLQFN-KNFVITSSDDGTVKLWDLKTGEFI-RNLVTLESGGSGGVVWRIRASNTKLV  421 (445)
T ss_dssp             EETTTCCEEEEECSTTSCSSCEEEEEEC-SSEEEEEETTSEEEEEETTTCCEE-EEEEECTTGGGTCEEEEEEECSSEEE
T ss_pred             EECCCCcEEEEEccCCCCCCCEEEEEEC-CCEEEEEeCCCeEEEEECCCCcee-eeeeccccCCCCceEEEEEecCCEEE
Confidence            99999999999986   88899999996 359999999999999999865421 10101122568889999999999999


Q ss_pred             EEEecCCCC
Q 043707          339 VYCGSSDGL  347 (347)
Q Consensus       339 l~sgs~DG~  347 (347)
                      |++|+.||+
T Consensus       422 la~~~~dg~  430 (445)
T 2ovr_B          422 CAVGSRNGT  430 (445)
T ss_dssp             EEEECSSSS
T ss_pred             EEEcccCCC
Confidence            999999984

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.93  E-value=3.7e-25  Score=201.52  Aligned_cols=195  Identities=14%  Similarity=0.151  Sum_probs=153.7

Q ss_pred             eeEeeeecc---ccEEEEee--cCCEEEEecCCCcEEEEeCC-CcceeeecCCCCeeEEEEeCCCC-EEEEEeCCCcEEE
Q 043707          115 LIGSIVRKE---GHIYSLAA--SGDLLYTGSDSKNIRVWKNL-KEFSGFKSNSGLVKAIIITGDSN-KIFTGHQDGKIRI  187 (347)
Q Consensus       115 ~i~~l~~h~---~~V~~l~~--~~~~l~tg~~dg~I~vwd~~-~~~~~~~~h~~~V~~l~~sp~~~-~l~s~~~Dg~I~v  187 (347)
                      .+..+..|.   ..|.++++  ++++|++|+.||.|++||.. +....+..|...|.+++|+|+++ +|++|+.|+.|++
T Consensus       152 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i  231 (383)
T 3ei3_B          152 VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKL  231 (383)
T ss_dssp             EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred             ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEE
Confidence            344444443   67888876  57899999999999999964 45677889999999999999998 8999999999999


Q ss_pred             EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCC
Q 043707          188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISD  266 (347)
Q Consensus       188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~vwdl~~  266 (347)
                      ||+++.+....                             .....+|...|.+++|+| ++.+|++++.|+.|++||+++
T Consensus       232 wd~~~~~~~~~-----------------------------~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~  282 (383)
T 3ei3_B          232 WDLRNIKDKNS-----------------------------YIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD  282 (383)
T ss_dssp             EEGGGCCSTTC-----------------------------EEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTB
T ss_pred             EeCCCCCcccc-----------------------------eEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCC
Confidence            99987542110                             011124889999999999 999999999999999999998


Q ss_pred             CEEEEEEecCC-----------------CcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhc--cCCcE
Q 043707          267 CKCLESINAHD-----------------DAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLK--QENAI  327 (347)
Q Consensus       267 ~~~~~~~~~h~-----------------~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~--h~~~V  327 (347)
                      ++.+..+..|.                 ..+..++++|++.+ +++.|+.|++||+..+.      ++..+..  |...+
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~------~~~~l~~~~~~~~~  355 (383)
T 3ei3_B          283 WSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGG------LVHQLRDPNAAGII  355 (383)
T ss_dssp             TTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCC------EEEEECBTTBCSCC
T ss_pred             CccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCc------eeeeecCCCCCceE
Confidence            88776666543                 23444666777644 77899999999997544      3445554  56778


Q ss_pred             EEEEEccCCCEEEEecCCC
Q 043707          328 TALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       328 ~~l~~~p~~~~l~sgs~DG  346 (347)
                      ..++|+|++++|++|+ ||
T Consensus       356 ~~~~~s~~g~~l~s~s-d~  373 (383)
T 3ei3_B          356 SLNKFSPTGDVLASGM-GF  373 (383)
T ss_dssp             CEEEECTTSSEEEEEE-TT
T ss_pred             EEEEEecCccEEEEec-CC
Confidence            8889999999999997 76

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.93  E-value=1.8e-24  Score=191.21  Aligned_cols=213  Identities=16%  Similarity=0.263  Sum_probs=172.5

Q ss_pred             CCCCCCCcccccc-------------cceeEeeeeccccEEEEeecCCEEEEecCCCcEEEEeCC---CcceeeecCCCC
Q 043707          100 PPYSPNENLLSSC-------------NGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNL---KEFSGFKSNSGL  163 (347)
Q Consensus       100 ~~~~p~~~~~~~~-------------~~~i~~l~~h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~---~~~~~~~~h~~~  163 (347)
                      ..|+|+++.++..             .+.+..+.+|...+.++.+.+.+|++|+.++.+++|+..   .....+.+|...
T Consensus        73 v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (318)
T 4ggc_A           73 VAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE  152 (318)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC
T ss_pred             EEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCc
Confidence            3688888776543             236788889999999999999999999999999999854   335677889999


Q ss_pred             eeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEE
Q 043707          164 VKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSL  243 (347)
Q Consensus       164 V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  243 (347)
                      +..+++.+++++|++++.||.|++||+++++.......                            ....+...|.++.+
T Consensus       153 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----------------------------~~~~~~~~v~~~~~  204 (318)
T 4ggc_A          153 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ----------------------------TFTQHQGAVKAVAW  204 (318)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSE----------------------------EECCCCSCEEEEEE
T ss_pred             eEEEEEcCCCCEEEEEecCcceeEEECCCCccccccee----------------------------eecccCCceEEEEe
Confidence            99999999999999999999999999987753221111                            11137788999999


Q ss_pred             cCCCC-EE--EEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEE--EeCCCcEEEEEcccCCccceeeeh
Q 043707          244 NAEQG-LL--YSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFT--GSADGTVKVWRRELQGKGTKHFLA  317 (347)
Q Consensus       244 ~~~~~-~l--~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s--~~~dg~I~vwd~~~~~~~~~~~~~  317 (347)
                      ++++. .+  ++++.+++|++||.+......... +...+..+.|.+++ .+++  |+.|+.|++||++...      ++
T Consensus       205 ~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~------~~  277 (318)
T 4ggc_A          205 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA------KV  277 (318)
T ss_dssp             CTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC------EE
T ss_pred             cCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc------EE
Confidence            99754 33  456778999999999888776665 66678999998886 4443  4589999999998543      56


Q ss_pred             hhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          318 QVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       318 ~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      ..+.+|...|++|+|+|++++|++||.||+
T Consensus       278 ~~l~gH~~~V~~l~~spdg~~l~S~s~D~~  307 (318)
T 4ggc_A          278 AELKGHTSRVLSLTMSPDGATVASAAADET  307 (318)
T ss_dssp             EEECCCSSCEEEEEECTTSSCEEEEETTTE
T ss_pred             EEEcCCCCCEEEEEEcCCCCEEEEEecCCe
Confidence            778899999999999999999999999984

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.93  E-value=2e-24  Score=208.09  Aligned_cols=219  Identities=12%  Similarity=0.069  Sum_probs=167.5

Q ss_pred             eccccEEEEe--ecCCEEEEecCCCcEEEEeCC------CcceeeecCCCC-eeEEEEeC--CCCEEEEEeCCCcEEEEe
Q 043707          121 RKEGHIYSLA--ASGDLLYTGSDSKNIRVWKNL------KEFSGFKSNSGL-VKAIIITG--DSNKIFTGHQDGKIRIWK  189 (347)
Q Consensus       121 ~h~~~V~~l~--~~~~~l~tg~~dg~I~vwd~~------~~~~~~~~h~~~-V~~l~~sp--~~~~l~s~~~Dg~I~vwd  189 (347)
                      .|.+.|.+++  +++++|++++ ++.|++|+..      +....+.+|.+. |.+++|+|  ++++|++|+.||.|++||
T Consensus        16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~   94 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG   94 (615)
T ss_dssp             CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred             CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence            3556666655  5688999998 7899999965      456778899999 99999999  999999999999999999


Q ss_pred             cCCC------CCceeeeec----------ccccccceEEeccCCC--eEEEEeecc--eeeeeecCCCeeEEEEcCCCC-
Q 043707          190 VSRK------NPSVHKRVG----------SLPTFKDYVKSSVNPK--NYVEVRRNR--NVLKIRHYDAVSCLSLNAEQG-  248 (347)
Q Consensus       190 ~~~~------~~~~~~~~~----------~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~h~~~V~~l~~~~~~~-  248 (347)
                      +.++      .........          ..+....++....+..  ..+.++...  .....+|...|.+++|+|++. 
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~  174 (615)
T 1pgu_A           95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPM  174 (615)
T ss_dssp             EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSC
T ss_pred             CCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCc
Confidence            9754      111111111          1122222222222111  222222211  223346899999999999987 


Q ss_pred             EEEEEeCCCcEEEEeCCCCEEEEEEecCCC---cEEEEEeCCC-C-EEEEEeCCCcEEEEEcccCCccceeeehhhh-h-
Q 043707          249 LLYSGSWDKTLKVWRISDCKCLESINAHDD---AINSVVAGFD-S-LVFTGSADGTVKVWRRELQGKGTKHFLAQVL-L-  321 (347)
Q Consensus       249 ~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~---~v~~i~~~~~-~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~-~-  321 (347)
                      +|++++.|+.|++||+++++++..+..|..   .|.+++|+|+ + +|++++.||.|++||++...      ....+ . 
T Consensus       175 ~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~------~~~~~~~~  248 (615)
T 1pgu_A          175 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE------FLKYIEDD  248 (615)
T ss_dssp             EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC------EEEECCBT
T ss_pred             EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC------EeEEeccc
Confidence            899999999999999999999999999999   9999999999 7 89999999999999997543      34444 4 


Q ss_pred             --ccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          322 --KQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       322 --~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                        .|...|.+++|+ ++++|++++.||.
T Consensus       249 ~~~~~~~v~~~~~~-~~~~l~~~~~d~~  275 (615)
T 1pgu_A          249 QEPVQGGIFALSWL-DSQKFATVGADAT  275 (615)
T ss_dssp             TBCCCSCEEEEEES-SSSEEEEEETTSE
T ss_pred             ccccCCceEEEEEc-CCCEEEEEcCCCc
Confidence              789999999999 9999999999873

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.93  E-value=1.9e-24  Score=193.98  Aligned_cols=194  Identities=13%  Similarity=0.177  Sum_probs=154.5

Q ss_pred             eEeeeeccccEEEEeec--CC-EEEEecC---CCcEEEEeCCCc--c-eeeecCCCCeeEEEEeCC---CCEEEEEeCCC
Q 043707          116 IGSIVRKEGHIYSLAAS--GD-LLYTGSD---SKNIRVWKNLKE--F-SGFKSNSGLVKAIIITGD---SNKIFTGHQDG  183 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~~--~~-~l~tg~~---dg~I~vwd~~~~--~-~~~~~h~~~V~~l~~sp~---~~~l~s~~~Dg  183 (347)
                      ...+.+|.+.|.+++++  +. ++++|+.   ||.|+|||....  . .....|...|.+++|+|+   +++|++|+.||
T Consensus        11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg   90 (357)
T 3i2n_A           11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG   90 (357)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred             hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence            44557799999999986  43 6667776   999999996543  2 223378999999999998   69999999999


Q ss_pred             cEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEE------EcCCCCEEEEEeCCC
Q 043707          184 KIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLS------LNAEQGLLYSGSWDK  257 (347)
Q Consensus       184 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~------~~~~~~~l~s~s~dg  257 (347)
                      .|++||+.+++.....                               ..+|...|.++.      |++++.+|++++.||
T Consensus        91 ~i~iwd~~~~~~~~~~-------------------------------~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~  139 (357)
T 3i2n_A           91 NLHIWNLEAPEMPVYS-------------------------------VKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDG  139 (357)
T ss_dssp             CEEEECTTSCSSCSEE-------------------------------ECCCSSCEEEEEEESGGGCC-CCCEEEEEETTS
T ss_pred             eEEEEeCCCCCccEEE-------------------------------EEecccceEEEeeccccccCCCccEEEEEeCCC
Confidence            9999999987521111                               114889999995      467899999999999


Q ss_pred             cEEEEeCCCCE-EEEEEecCCC----cEEEEE----eCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcE
Q 043707          258 TLKVWRISDCK-CLESINAHDD----AINSVV----AGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAI  327 (347)
Q Consensus       258 ~i~vwdl~~~~-~~~~~~~h~~----~v~~i~----~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V  327 (347)
                      .|++||+++++ ++..+..|..    .+.++.    |++++ +|++++.||.|++||++....       .....|...|
T Consensus       140 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-------~~~~~~~~~v  212 (357)
T 3i2n_A          140 TVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL-------RWETNIKNGV  212 (357)
T ss_dssp             CEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE-------EEEEECSSCE
T ss_pred             eEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce-------eeecCCCCce
Confidence            99999999887 7888876655    788998    67776 999999999999999985431       2335678899


Q ss_pred             EEEEEcc---CCCEEEEecCCCC
Q 043707          328 TALAVNQ---ESAVVYCGSSDGL  347 (347)
Q Consensus       328 ~~l~~~p---~~~~l~sgs~DG~  347 (347)
                      .+++|+|   ++.+|++|+.||.
T Consensus       213 ~~~~~~~~~~~~~~l~~~~~dg~  235 (357)
T 3i2n_A          213 CSLEFDRKDISMNKLVATSLEGK  235 (357)
T ss_dssp             EEEEESCSSSSCCEEEEEESTTE
T ss_pred             EEEEcCCCCCCCCEEEEECCCCe
Confidence            9999999   9999999999873

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.3e-25  Score=206.45  Aligned_cols=195  Identities=13%  Similarity=0.226  Sum_probs=150.0

Q ss_pred             ccccEEEEe----ecCCEEEEecCCCcEEEEeCC--Ccceeeec--CCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 043707          122 KEGHIYSLA----ASGDLLYTGSDSKNIRVWKNL--KEFSGFKS--NSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRK  193 (347)
Q Consensus       122 h~~~V~~l~----~~~~~l~tg~~dg~I~vwd~~--~~~~~~~~--h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~  193 (347)
                      +...+.++.    .++.+|++|+.||.|++||..  +.+..+..  |.+.|.+++|+|++++|++|+.||.|++||++.+
T Consensus       167 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  246 (437)
T 3gre_A          167 KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN  246 (437)
T ss_dssp             SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred             cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc
Confidence            344555555    247799999999999999965  44667777  8899999999999999999999999999999876


Q ss_pred             CCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC----CCCEEEEEeCCCcEEEEeCCCCEE
Q 043707          194 NPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA----EQGLLYSGSWDKTLKVWRISDCKC  269 (347)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~----~~~~l~s~s~dg~i~vwdl~~~~~  269 (347)
                      +.......                               .|...|.+++|+|    ++.+|++|+.||+|++||++++++
T Consensus       247 ~~~~~~~~-------------------------------~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~  295 (437)
T 3gre_A          247 VLIRSWSF-------------------------------GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHC  295 (437)
T ss_dssp             EEEEEEBC-------------------------------TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEE
T ss_pred             cEEEEEec-------------------------------CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcE
Confidence            43222111                               3677899996665    577999999999999999999999


Q ss_pred             EEEEecC--------------------------CCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceee--------
Q 043707          270 LESINAH--------------------------DDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHF--------  315 (347)
Q Consensus       270 ~~~~~~h--------------------------~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~--------  315 (347)
                      +..+.+|                          ...|.+++|+++.+|++|+.|+.|++||+..........        
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~  375 (437)
T 3gre_A          296 QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDV  375 (437)
T ss_dssp             EEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCE
T ss_pred             EEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCce
Confidence            8888754                          455788888844489999999999999997544210000        


Q ss_pred             -----------------------ehhhhhccCCcEEEEEEccC--CCEEEEecCCCC
Q 043707          316 -----------------------LAQVLLKQENAITALAVNQE--SAVVYCGSSDGL  347 (347)
Q Consensus       316 -----------------------~~~~~~~h~~~V~~l~~~p~--~~~l~sgs~DG~  347 (347)
                                             .......|...|++|+|+++  +.+|++|+.||+
T Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~  432 (437)
T 3gre_A          376 FIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGL  432 (437)
T ss_dssp             EEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSC
T ss_pred             EEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCce
Confidence                                   00112348999999999998  789999999985

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.93  E-value=4.4e-24  Score=198.50  Aligned_cols=220  Identities=20%  Similarity=0.360  Sum_probs=164.0

Q ss_pred             eeEeeeecccc-EEEEeecCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecC
Q 043707          115 LIGSIVRKEGH-IYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVS  191 (347)
Q Consensus       115 ~i~~l~~h~~~-V~~l~~~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~  191 (347)
                      ....+.+|.+. +.|+.+++++|++|+.||+|++||..  +....+.+|.+.|.+++|++  +.|++|+.||+|++||+.
T Consensus       110 ~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~--~~l~s~~~dg~i~vwd~~  187 (445)
T 2ovr_B          110 SPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVWNAE  187 (445)
T ss_dssp             CCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET--TEEEEEETTSCEEEEETT
T ss_pred             eeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecC--CEEEEEeCCCeEEEEECC
Confidence            46778899886 68999999999999999999999954  55778889999999999984  599999999999999998


Q ss_pred             CCCCceeeeecc-----cccccc-eEEeccCCCeE-EEEeecce-eeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 043707          192 RKNPSVHKRVGS-----LPTFKD-YVKSSVNPKNY-VEVRRNRN-VLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWR  263 (347)
Q Consensus       192 ~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~-~~~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwd  263 (347)
                      +++.........     +..... ++....++... ++...... ....+|...|.+++|  ++.+|++|+.||.|++||
T Consensus       188 ~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd  265 (445)
T 2ovr_B          188 TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWD  265 (445)
T ss_dssp             TTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEE
T ss_pred             cCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEE
Confidence            875432221110     000011 22222222211 11122222 233468888888888  888888888899999999


Q ss_pred             CCCCEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          264 ISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       264 l~~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                      +++++++..+.+|...|.++.| ...++++++.||.|++||++..      .....+.+|...+.++.+  ++++|++|+
T Consensus       266 ~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~v~~~~~--~~~~l~~~~  336 (445)
T 2ovr_B          266 PETETCLHTLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETG------NCIHTLTGHQSLTSGMEL--KDNILVSGN  336 (445)
T ss_dssp             GGGTEEEEEECCCSSCEEEEEE-CSSEEEEEETTSCEEEEETTTC------CEEEEECCCCSCEEEEEE--ETTEEEEEE
T ss_pred             CCCCcEeEEecCCCCceEEEEE-CCCEEEEEeCCCeEEEEECCCC------CEEEEEcCCcccEEEEEE--eCCEEEEEe
Confidence            8888888888888888888888 4348888888999999988743      377788888888887765  888888888


Q ss_pred             CCCC
Q 043707          344 SDGL  347 (347)
Q Consensus       344 ~DG~  347 (347)
                      .||.
T Consensus       337 ~dg~  340 (445)
T 2ovr_B          337 ADST  340 (445)
T ss_dssp             TTSC
T ss_pred             CCCe
Confidence            8874

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.93  E-value=1.4e-24  Score=201.40  Aligned_cols=208  Identities=14%  Similarity=0.189  Sum_probs=154.4

Q ss_pred             eeeccccEEEEee--cCCEEEEecCCCcEEEEeCCCc---ce-------eeecCCCCeeEEEEeCCC-CEEEEEeCCCcE
Q 043707          119 IVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKE---FS-------GFKSNSGLVKAIIITGDS-NKIFTGHQDGKI  185 (347)
Q Consensus       119 l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~~---~~-------~~~~h~~~V~~l~~sp~~-~~l~s~~~Dg~I  185 (347)
                      +.+|.+.|.++++  ++++|++| .||.|++||....   ..       .+.+|...|.+++|+|++ ++|++|+.||.|
T Consensus       173 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i  251 (447)
T 3dw8_B          173 ANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI  251 (447)
T ss_dssp             CSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred             ccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence            3679999999887  57799999 7999999997732   22       356899999999999998 999999999999


Q ss_pred             EEEecCCCCCcee--eeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 043707          186 RIWKVSRKNPSVH--KRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWR  263 (347)
Q Consensus       186 ~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwd  263 (347)
                      ++||+++++....  ........                  ........+|...|.+++|+|++.+|++++. +.|++||
T Consensus       252 ~iwd~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd  312 (447)
T 3dw8_B          252 RLCDMRASALCDRHSKLFEEPED------------------PSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWD  312 (447)
T ss_dssp             EEEETTTCSSSCTTCEEECCC-----------------------CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEE
T ss_pred             EEEECcCCccccceeeEeccCCC------------------ccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEe
Confidence            9999998764110  00000000                  0000011124459999999999999999998 9999999


Q ss_pred             CCC-CEEEEEEecCCCc---------------EEEEEeCCCC-EEEEEeCCCcEEEEEcccCCcccee------------
Q 043707          264 ISD-CKCLESINAHDDA---------------INSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKH------------  314 (347)
Q Consensus       264 l~~-~~~~~~~~~h~~~---------------v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~------------  314 (347)
                      +++ ++++..+..|...               +..++|+|++ +|++|+.||.|++||+.........            
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  392 (447)
T 3dw8_B          313 LNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVL  392 (447)
T ss_dssp             TTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBC
T ss_pred             CCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeeccccccccccc
Confidence            997 8889999888642               2348999998 8999999999999999854321000            


Q ss_pred             --------------eehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          315 --------------FLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       315 --------------~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                                    ........+...|..++|+|++.+||+++.|+
T Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~  438 (447)
T 3dw8_B          393 KPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN  438 (447)
T ss_dssp             CCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC
T ss_pred             CCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce
Confidence                          00001123456799999999999999999886

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.9e-24  Score=200.14  Aligned_cols=199  Identities=13%  Similarity=0.143  Sum_probs=156.2

Q ss_pred             eeeccccEEEEeec--CCEE-EEecCCCcEEEEeCC----Ccceeee--cCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707          119 IVRKEGHIYSLAAS--GDLL-YTGSDSKNIRVWKNL----KEFSGFK--SNSGLVKAIIITGDSNKIFTGHQDGKIRIWK  189 (347)
Q Consensus       119 l~~h~~~V~~l~~~--~~~l-~tg~~dg~I~vwd~~----~~~~~~~--~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd  189 (347)
                      ...|.+.|.+++++  +++| ++|+.||.|+|||..    +....+.  .|...|.+++|+|++++|++|+.||.|++|+
T Consensus        98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~  177 (450)
T 2vdu_B           98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID  177 (450)
T ss_dssp             --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence            45678889998874  6675 899999999999965    3445554  5678999999999999999999999999999


Q ss_pred             cCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC---CCEEEEEeCCCcEEEEeCCC
Q 043707          190 VSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE---QGLLYSGSWDKTLKVWRISD  266 (347)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~---~~~l~s~s~dg~i~vwdl~~  266 (347)
                      +.+.+.... .                           .....+|...|.+++|+|+   +.+|++++.|++|++||+++
T Consensus       178 ~~~~~~~~~-~---------------------------~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~  229 (450)
T 2vdu_B          178 INSIPEEKF-T---------------------------QEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ  229 (450)
T ss_dssp             TTSCCCSSC-C---------------------------CCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC
T ss_pred             cCCcccccc-c---------------------------ceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC
Confidence            987753320 0                           0011258899999999999   99999999999999999999


Q ss_pred             CEEEEE-EecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehh---hh----------------hccCC
Q 043707          267 CKCLES-INAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQ---VL----------------LKQEN  325 (347)
Q Consensus       267 ~~~~~~-~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~---~~----------------~~h~~  325 (347)
                      ++++.. +.+|...|.+++|+ ++ +|++++.|+.|++||++.+..........   .+                .....
T Consensus       230 ~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (450)
T 2vdu_B          230 CFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEF  308 (450)
T ss_dssp             TTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCC
T ss_pred             CceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceE
Confidence            988877 55899999999999 76 99999999999999998654211111000   00                02345


Q ss_pred             cEEEEEEccCCCEEEEec-CCC
Q 043707          326 AITALAVNQESAVVYCGS-SDG  346 (347)
Q Consensus       326 ~V~~l~~~p~~~~l~sgs-~DG  346 (347)
                      .|.+++|+|++++|++++ .||
T Consensus       309 ~v~~i~~~~~~~~l~~~~~~d~  330 (450)
T 2vdu_B          309 AVSKIIKSKNLPFVAFFVEATK  330 (450)
T ss_dssp             CEEEEEECSSSSEEEEEETTCS
T ss_pred             EEEEEEEeCCCCEEEEEECCCC
Confidence            799999999999999998 665

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.93  E-value=2.7e-24  Score=223.72  Aligned_cols=208  Identities=15%  Similarity=0.248  Sum_probs=160.6

Q ss_pred             CCCCCCCCcccccc-------------cceeEeeeeccccEEEEeec----CCEEEEecCCCcEEEEeCC--Ccceeeec
Q 043707           99 MPPYSPNENLLSSC-------------NGLIGSIVRKEGHIYSLAAS----GDLLYTGSDSKNIRVWKNL--KEFSGFKS  159 (347)
Q Consensus        99 ~~~~~p~~~~~~~~-------------~~~i~~l~~h~~~V~~l~~~----~~~l~tg~~dg~I~vwd~~--~~~~~~~~  159 (347)
                      ...|+|++..++..             ...+..+.+|.+.|.++.+.    +.++++|+.||.|++||..  +....+.+
T Consensus       662 ~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~  741 (1249)
T 3sfz_A          662 CCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG  741 (1249)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECC
T ss_pred             EEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecC
Confidence            34688888776543             23677888999999999984    3489999999999999965  44667889


Q ss_pred             CCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeec---------------------ccccccceEEeccCCC
Q 043707          160 NSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVG---------------------SLPTFKDYVKSSVNPK  218 (347)
Q Consensus       160 h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~  218 (347)
                      |.+.|.+++|+|++++|++|+.||.|++||+.+++........                     ..+....++.......
T Consensus       742 h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v  821 (1249)
T 3sfz_A          742 HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKV  821 (1249)
T ss_dssp             CSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEE
T ss_pred             CCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcE
Confidence            9999999999999999999999999999999877543222111                     1112222222221111


Q ss_pred             eEEEEeeccee--eeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEe
Q 043707          219 NYVEVRRNRNV--LKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGS  295 (347)
Q Consensus       219 ~~~~~~~~~~~--~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~  295 (347)
                      .++........  ...+|...|.+++|+|++.++++++.||.|++||+.+++.+..+.+|...|.+++|+|++ +|++++
T Consensus       822 ~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s  901 (1249)
T 3sfz_A          822 LLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS  901 (1249)
T ss_dssp             EEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEe
Confidence            11111111211  223688999999999999999999999999999999999999999999999999999998 899999


Q ss_pred             CCCcEEEEEcc
Q 043707          296 ADGTVKVWRRE  306 (347)
Q Consensus       296 ~dg~I~vwd~~  306 (347)
                      .||.|++|++.
T Consensus       902 ~dg~v~vw~~~  912 (1249)
T 3sfz_A          902 DDQTIRVWETK  912 (1249)
T ss_dssp             TTSCEEEEEHH
T ss_pred             CCCeEEEEEcc
Confidence            99999999975

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.93  E-value=4.7e-25  Score=204.69  Aligned_cols=189  Identities=16%  Similarity=0.189  Sum_probs=144.6

Q ss_pred             eEeeeeccccEEEEeec---CCEEEEecCCCcEEEEeCCCc-ceeee---cCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707          116 IGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLKE-FSGFK---SNSGLVKAIIITGDSNKIFTGHQDGKIRIW  188 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~~~-~~~~~---~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw  188 (347)
                      +..+.+|.+.|++++|+   +++|++|+.||+|++||+... ...+.   .+...+.+++|+|++++|++|+.||.|++|
T Consensus       157 ~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~w  236 (435)
T 4e54_B          157 FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILL  236 (435)
T ss_dssp             EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEE
T ss_pred             EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeee
Confidence            34456899999999974   679999999999999997643 23332   234568899999999999999999999999


Q ss_pred             ecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCC
Q 043707          189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQG-LLYSGSWDKTLKVWRISDC  267 (347)
Q Consensus       189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~dg~i~vwdl~~~  267 (347)
                      |++......                                 +.+|...|.+++|+|++. +|++|+.|++|+|||+++.
T Consensus       237 d~~~~~~~~---------------------------------~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~  283 (435)
T 4e54_B          237 NMDGKELWN---------------------------------LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQV  283 (435)
T ss_dssp             ESSSCBCCC---------------------------------SBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTC
T ss_pred             ccCcceeEE---------------------------------EecccceEEeeeecCCCceEEEEecCcceeeEEecccc
Confidence            997542111                                 114899999999999865 7889999999999999887


Q ss_pred             EEEEE---EecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhcc------CCcEEEEEEccCCC
Q 043707          268 KCLES---INAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQ------ENAITALAVNQESA  337 (347)
Q Consensus       268 ~~~~~---~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h------~~~V~~l~~~p~~~  337 (347)
                      +....   ..+|...|++++|+|++ +|++++.||.|+|||+.....      ...+..|      ...+..+.|+|++.
T Consensus       284 ~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (435)
T 4e54_B          284 RGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDC------PLGLIPHPHRHFQHLTPIKAAWHPRYN  357 (435)
T ss_dssp             CSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSS------EEEECCCCCCCCSSSCCCBCEECSSSS
T ss_pred             cccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCcc------ceEEecccccccccceeEEEEEcCCCC
Confidence            65433   35799999999999998 999999999999999985542      1111112      11234556777776


Q ss_pred             EEEEec
Q 043707          338 VVYCGS  343 (347)
Q Consensus       338 ~l~sgs  343 (347)
                      ++++++
T Consensus       358 ~~~~~~  363 (435)
T 4e54_B          358 LIVVGR  363 (435)
T ss_dssp             CEEEEC
T ss_pred             EEEEEE
Confidence            666654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=7.9e-25  Score=196.71  Aligned_cols=183  Identities=8%  Similarity=-0.006  Sum_probs=141.3

Q ss_pred             ecCCEEEEecCCCcEEEEeCCCc--ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeeccccccc
Q 043707          131 ASGDLLYTGSDSKNIRVWKNLKE--FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFK  208 (347)
Q Consensus       131 ~~~~~l~tg~~dg~I~vwd~~~~--~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~  208 (347)
                      .++++|++|+.||.|++||....  +..+.  ...|.++.|+|+   +++++.|++|++|+........  ...      
T Consensus        46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~--~~~------  112 (343)
T 3lrv_A           46 YDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITIL--DSK------  112 (343)
T ss_dssp             EEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEE--ETT------
T ss_pred             CCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEe--ecC------
Confidence            46779999999999999996533  33343  467888889888   9999999999999887421000  000      


Q ss_pred             ceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC--CCCEEEEEeCCCcEEEEeCCCCEEEEEEe-cCCCcEEEEEe
Q 043707          209 DYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA--EQGLLYSGSWDKTLKVWRISDCKCLESIN-AHDDAINSVVA  285 (347)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~dg~i~vwdl~~~~~~~~~~-~h~~~v~~i~~  285 (347)
                              ....      ......+|...|.+++|+|  ++.+|++++.||+|++||+++++++..+. .|...|.+++|
T Consensus       113 --------~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~  178 (343)
T 3lrv_A          113 --------TNKV------LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVL  178 (343)
T ss_dssp             --------TCCE------EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEE
T ss_pred             --------Ccce------eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEE
Confidence                    0000      0011224778899999999  99999999999999999999999877764 45568999999


Q ss_pred             CCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhc-cCCcEEEEEEccCCCEEEEecCC
Q 043707          286 GFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLK-QENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       286 ~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~-h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                      +|++ +|++|+.||.|++||++....     ....+.. |...|++|+|+|++.+|++++.|
T Consensus       179 ~pdg~~lasg~~dg~i~iwd~~~~~~-----~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~  235 (343)
T 3lrv_A          179 HKDSLLLALYSPDGILDVYNLSSPDQ-----ASSRFPVDEEAKIKEVKFADNGYWMVVECDQ  235 (343)
T ss_dssp             CTTSCEEEEECTTSCEEEEESSCTTS-----CCEECCCCTTSCEEEEEECTTSSEEEEEESS
T ss_pred             CCCCCEEEEEcCCCEEEEEECCCCCC-----CccEEeccCCCCEEEEEEeCCCCEEEEEeCC
Confidence            9998 888999999999999986543     2244555 99999999999999999999954

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.93  E-value=2.5e-24  Score=195.30  Aligned_cols=177  Identities=16%  Similarity=0.155  Sum_probs=139.1

Q ss_pred             CCCCCCccccccc----c-----------eeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC-Cc---ceeeec
Q 043707          101 PYSPNENLLSSCN----G-----------LIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL-KE---FSGFKS  159 (347)
Q Consensus       101 ~~~p~~~~~~~~~----~-----------~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~-~~---~~~~~~  159 (347)
                      .|+|+|+.++...    +           .+..+ .|.+.|+++++  +|++|++++.++ +++|+.. ..   ......
T Consensus       140 ~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~-~~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~  217 (365)
T 4h5i_A          140 YISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI-ETRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFD  217 (365)
T ss_dssp             EECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE-ECSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCC
T ss_pred             EEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe-CCCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCC
Confidence            5889998764221    1           33334 57788988886  578999998665 5555533 22   224456


Q ss_pred             CCCCeeEEEEeCCCCEEEEEeCCC----cEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecC
Q 043707          160 NSGLVKAIIITGDSNKIFTGHQDG----KIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHY  235 (347)
Q Consensus       160 h~~~V~~l~~sp~~~~l~s~~~Dg----~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  235 (347)
                      |...|.+++|+|+++++++++.|+    .+++|++.........                            .....+|.
T Consensus       218 ~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~----------------------------~~~~~~~~  269 (365)
T 4h5i_A          218 KNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLR----------------------------SKQVTNRF  269 (365)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEE----------------------------EEEEESSC
T ss_pred             CCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceeccee----------------------------eeeecCCC
Confidence            888999999999999999999887    6888888765321111                            11223588


Q ss_pred             CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEE-ecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEccc
Q 043707          236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI-NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRREL  307 (347)
Q Consensus       236 ~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~-~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~  307 (347)
                      ..|++++|+|++++|++|+.|++|+|||+++++++..+ ++|...|++|+|+||+ +|++|+.|++|+|||+..
T Consensus       270 ~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          270 KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            99999999999999999999999999999999999886 7899999999999998 999999999999999963

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.3e-24  Score=216.83  Aligned_cols=204  Identities=14%  Similarity=0.112  Sum_probs=150.8

Q ss_pred             ccccEEEEee------------cCCEEEEecCCCcEEEEeCCCc--c-------ee------------------------
Q 043707          122 KEGHIYSLAA------------SGDLLYTGSDSKNIRVWKNLKE--F-------SG------------------------  156 (347)
Q Consensus       122 h~~~V~~l~~------------~~~~l~tg~~dg~I~vwd~~~~--~-------~~------------------------  156 (347)
                      |.+.|.++.+            ++..+++++.||.|++|+....  .       ..                        
T Consensus       341 ~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~  420 (902)
T 2oaj_A          341 TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGA  420 (902)
T ss_dssp             SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHH
T ss_pred             CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHH
Confidence            4566766653            2337888999999999996321  1       01                        


Q ss_pred             ----------eecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeec
Q 043707          157 ----------FKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRN  226 (347)
Q Consensus       157 ----------~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (347)
                                +.+|...+..++|+|+++.|++|+.||+||+||+.++.........                    ... 
T Consensus       421 ~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~--------------------~~l-  479 (902)
T 2oaj_A          421 LSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFE--------------------VNL-  479 (902)
T ss_dssp             HHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEE--------------------EEH-
T ss_pred             HhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEE--------------------eec-
Confidence                      2334445555666788999999999999999999887421100000                    000 


Q ss_pred             ceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC---------------------------------------
Q 043707          227 RNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC---------------------------------------  267 (347)
Q Consensus       227 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~---------------------------------------  267 (347)
                      .+....+|...|.+++|+|++++|++|+.||+|+|||+.++                                       
T Consensus       480 ~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (902)
T 2oaj_A          480 SRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPT  559 (902)
T ss_dssp             HHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCT
T ss_pred             hhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCC
Confidence            00001158899999999999999999999999999999765                                       


Q ss_pred             ------EEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhh-ccCCcEEEEEEc-----cC
Q 043707          268 ------KCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLL-KQENAITALAVN-----QE  335 (347)
Q Consensus       268 ------~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~-~h~~~V~~l~~~-----p~  335 (347)
                            +++..+.+|.+.|++|+|+|+|+||+|+.|++|+|||++....... .....+. +|...|++|+|+     ||
T Consensus       560 ~~~~g~~~~~~l~~h~~~V~svafSpdG~lAsgs~D~tv~lwd~~~~~~~~~-~~~~~~~~gh~~~V~sv~Fs~~~~~~D  638 (902)
T 2oaj_A          560 GVRQGFMPSTAVHANKGKTSAINNSNIGFVGIAYAAGSLMLIDRRGPAIIYM-ENIREISGAQSACVTCIEFVIMEYGDD  638 (902)
T ss_dssp             TCSEEEEEEEEECCCSCSEEEEEECBTSEEEEEETTSEEEEEETTTTEEEEE-EEGGGTCSSCCCCEEEEEEEEEECTTS
T ss_pred             CCCCccceeEEEEcCCCcEEEEEecCCcEEEEEeCCCcEEEEECCCCeEEEE-eehhHhccccccceEEEEEEEEecCCC
Confidence                  3577888999999999999999999999999999999864321000 1124554 899999999999     88


Q ss_pred             C---CEEEEecCCCC
Q 043707          336 S---AVVYCGSSDGL  347 (347)
Q Consensus       336 ~---~~l~sgs~DG~  347 (347)
                      |   ++|++|+.||+
T Consensus       639 g~~~~~l~sgs~D~t  653 (902)
T 2oaj_A          639 GYSSILMVCGTDMGE  653 (902)
T ss_dssp             SSEEEEEEEEETTSE
T ss_pred             CCcceEEEEEecCCc
Confidence            5   89999999984

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.92  E-value=3.1e-24  Score=200.21  Aligned_cols=199  Identities=11%  Similarity=0.086  Sum_probs=149.6

Q ss_pred             CCCCCCCcccccccc--------eeEeeeeccccEEEEeecCCEEEEecCCCcEEEEeCCCcceeee-cCCCCeeEEEEe
Q 043707          100 PPYSPNENLLSSCNG--------LIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFK-SNSGLVKAIIIT  170 (347)
Q Consensus       100 ~~~~p~~~~~~~~~~--------~i~~l~~h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~~~~~~~~-~h~~~V~~l~~s  170 (347)
                      ..|+|+|..+++...        ....+.+|...|++++++++-     .++.+.+|+..... .+. .|...|.+++|+
T Consensus        21 v~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg-----~~~~~~~~~~~~~~-~~~~~~~~~V~~vawS   94 (588)
T 2j04_A           21 LTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLE-----FENKLDFELAQQNG-LLNSQPVCYPRVCKPS   94 (588)
T ss_dssp             EEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCC-----CCCTTTTSCCCSSC-SSTTSCSCCEEEEEEC
T ss_pred             EEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCC-----CcceEEEEeCCCce-EeecCCCCcEEEEEEC
Confidence            368899988765422        223347899999988875432     46666666543222 222 457899999999


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecC-----CCeeEEEEcC
Q 043707          171 GDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHY-----DAVSCLSLNA  245 (347)
Q Consensus       171 p~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~V~~l~~~~  245 (347)
                      |+|++|++++.||.|++||...   .. ...                               .|.     ..|.+++|+|
T Consensus        95 PdG~~LAs~s~dg~V~iwd~~~---~l-~~l-------------------------------~~~~~~~~~sv~svafSP  139 (588)
T 2j04_A           95 PIDDWMAVLSNNGNVSVFKDNK---ML-TNL-------------------------------DSKGNLSSRTYHCFEWNP  139 (588)
T ss_dssp             SSSSCEEEEETTSCEEEEETTE---EE-EEC-------------------------------CCSSCSTTTCEEEEEECS
T ss_pred             CCCCEEEEEeCCCcEEEEeCCc---ee-eec-------------------------------cCCCccccccEEEEEEcC
Confidence            9999999999999999999543   00 000                               122     3599999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCE-------EEEEE----ecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCcccee
Q 043707          246 EQGLLYSGSWDKTLKVWRISDCK-------CLESI----NAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKH  314 (347)
Q Consensus       246 ~~~~l~s~s~dg~i~vwdl~~~~-------~~~~~----~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~  314 (347)
                      +|++|++|+.||+|+|||+.+++       .+.++    .+|...|.+++|+|++ +++++.|+.|++||+.....   .
T Consensus       140 DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~---~  215 (588)
T 2j04_A          140 IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSH---Q  215 (588)
T ss_dssp             SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSS---C
T ss_pred             CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCcc---c
Confidence            99999999999999999999875       36777    5677899999999999 99999999999999974431   0


Q ss_pred             eehhhh-hccCCcEEEEEEccCCCEEEEecCCC
Q 043707          315 FLAQVL-LKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       315 ~~~~~~-~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      ...+.+ .+|...|.+++|+  ++.||+++ ||
T Consensus       216 ~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~  245 (588)
T 2j04_A          216 PVSRMIQNASRRKITDLKIV--DYKVVLTC-PG  245 (588)
T ss_dssp             CCEEEEECCCSSCCCCEEEE--TTEEEEEC-SS
T ss_pred             cceeeecccccCcEEEEEEE--CCEEEEEe-CC
Confidence            012334 3688899999999  68999987 44

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.3e-22  Score=189.02  Aligned_cols=208  Identities=13%  Similarity=0.113  Sum_probs=161.3

Q ss_pred             CCCCCCCccc-ccc---------------cceeEeee--eccccEEEEee--cCCEEEEecCCCcEEEEeCCC------c
Q 043707          100 PPYSPNENLL-SSC---------------NGLIGSIV--RKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK------E  153 (347)
Q Consensus       100 ~~~~p~~~~~-~~~---------------~~~i~~l~--~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~------~  153 (347)
                      ..|+|++..+ +..               .+.+..+.  .|...|.++++  ++++|++|+.||.|++|+...      .
T Consensus       108 ~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~  187 (450)
T 2vdu_B          108 LRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFT  187 (450)
T ss_dssp             EEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCC
T ss_pred             EEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccccccc
Confidence            3577888764 322               12344444  45678888887  477999999999999998542      2


Q ss_pred             ceeeecCCCCeeEEEEeCC---CCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceee
Q 043707          154 FSGFKSNSGLVKAIIITGD---SNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVL  230 (347)
Q Consensus       154 ~~~~~~h~~~V~~l~~sp~---~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (347)
                      ...+.+|...|.+++|+|+   +++|++|+.|++|++||+.+++......                              
T Consensus       188 ~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~------------------------------  237 (450)
T 2vdu_B          188 QEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWL------------------------------  237 (450)
T ss_dssp             CCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEEC------------------------------
T ss_pred             ceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeee------------------------------
Confidence            3367889999999999999   9999999999999999998775432211                              


Q ss_pred             eeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecC-------------------------CCcEEEEEe
Q 043707          231 KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH-------------------------DDAINSVVA  285 (347)
Q Consensus       231 ~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h-------------------------~~~v~~i~~  285 (347)
                       .+|...|.+++|+ ++.+|++++.|++|++||+++++++..+..+                         ...|..++|
T Consensus       238 -~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  315 (450)
T 2vdu_B          238 -FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK  315 (450)
T ss_dssp             -CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred             -cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence             1489999999999 9999999999999999999999999888633                         356899999


Q ss_pred             CCCC-EEEEEe-CCCcEEEEEc--ccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          286 GFDS-LVFTGS-ADGTVKVWRR--ELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       286 ~~~~-~l~s~~-~dg~I~vwd~--~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                      +|++ +|++++ .|+.|++|++  ....   .......+..| ..|.+++|+|++.++++++
T Consensus       316 ~~~~~~l~~~~~~d~~i~iw~~~~~~~~---~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~  373 (450)
T 2vdu_B          316 SKNLPFVAFFVEATKCIIILEMSEKQKG---DLALKQIITFP-YNVISLSAHNDEFQVTLDN  373 (450)
T ss_dssp             CSSSSEEEEEETTCSEEEEEEECSSSTT---CEEEEEEEECS-SCEEEEEEETTEEEEEECC
T ss_pred             eCCCCEEEEEECCCCeEEEEEeccCCCC---ceeeccEeccC-CceEEEEecCCcEEEEEec
Confidence            9987 787777 8999999999  3221   22345556666 7899999999654444444

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.91  E-value=5.9e-23  Score=183.14  Aligned_cols=161  Identities=22%  Similarity=0.358  Sum_probs=121.2

Q ss_pred             ceeeecCCCCeeEEEEeCC-CCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeee
Q 043707          154 FSGFKSNSGLVKAIIITGD-SNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKI  232 (347)
Q Consensus       154 ~~~~~~h~~~V~~l~~sp~-~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (347)
                      ..++++|.+.|++|+|+|+ +++|+||+.||+|+|||+...+.......                           ..+.
T Consensus        31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~---------------------------~~l~   83 (340)
T 4aow_A           31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ---------------------------RALR   83 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEE---------------------------EEEC
T ss_pred             EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceee---------------------------EEEe
Confidence            3468899999999999996 68999999999999999987653222111                           1123


Q ss_pred             ecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCC-----------------------------------
Q 043707          233 RHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHD-----------------------------------  277 (347)
Q Consensus       233 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~-----------------------------------  277 (347)
                      +|...|.+++|+|++.+|++++.|+.|++|+............+.                                   
T Consensus        84 ~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~  163 (340)
T 4aow_A           84 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY  163 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE
T ss_pred             CCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceE
Confidence            599999999999999999999999999999998766554444433                                   


Q ss_pred             --------CcEEEEEeCCCC---EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          278 --------DAINSVVAGFDS---LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       278 --------~~v~~i~~~~~~---~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                              ..+..++|++++   ++++++.|+.|++||++..      .+...+.+|...|++|+|+|++++|++|+.||
T Consensus       164 ~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg  237 (340)
T 4aow_A          164 TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC------KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDG  237 (340)
T ss_dssp             EECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred             EEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC------ceeeEecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence                    444555554442   4555555556666655432      23455678999999999999999999999998


Q ss_pred             C
Q 043707          347 L  347 (347)
Q Consensus       347 ~  347 (347)
                      +
T Consensus       238 ~  238 (340)
T 4aow_A          238 Q  238 (340)
T ss_dssp             E
T ss_pred             e
Confidence            4

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.91  E-value=3.2e-23  Score=182.23  Aligned_cols=162  Identities=10%  Similarity=0.004  Sum_probs=119.4

Q ss_pred             eeEeeeecccc--EEEEee---cCCEEEEecCCCcEEEEeCC--CcceeeecCC---CCeeEEEEeCCCCEE--------
Q 043707          115 LIGSIVRKEGH--IYSLAA---SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNS---GLVKAIIITGDSNKI--------  176 (347)
Q Consensus       115 ~i~~l~~h~~~--V~~l~~---~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~---~~V~~l~~sp~~~~l--------  176 (347)
                      .+..+..|...  +.++++   ++++|++|+.|++|+|||..  +.++.+.+|.   ..|.+++|+|++.++        
T Consensus       170 ~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~  249 (356)
T 2w18_A          170 GKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCA  249 (356)
T ss_dssp             EEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC----
T ss_pred             eeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCC
Confidence            35565666654  556666   56899999999999999965  5567777653   467888999999876        


Q ss_pred             ----EEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEE
Q 043707          177 ----FTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYS  252 (347)
Q Consensus       177 ----~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s  252 (347)
                          ++|+.|++|++||..+++......... +                          .+|...+.+..+  ++.++++
T Consensus       250 ~w~laSGs~D~tIklWd~~tgk~l~v~~~~~-p--------------------------~Gh~~~~lsg~~--sg~~lAS  300 (356)
T 2w18_A          250 KESESLRSPVFQLIVINPKTTLSVGVMLYCL-P--------------------------PGQAGRFLEGDV--KDHCAAA  300 (356)
T ss_dssp             --------CCEEEEEEETTTTEEEEEEEECC-C--------------------------TTCCCCEEEEEE--ETTEEEE
T ss_pred             cceeeccCCCcEEEEEECCCCEEEEEEEeec-c--------------------------CCCcceeEcccc--CCCEEEE
Confidence                568899999999998875432211110 1                          034444444444  3789999


Q ss_pred             EeCCCcEEEEeCCCCEEEEEEecCCCcEE-EEEeCCCC-EEEEEeCCCcEEEEEc
Q 043707          253 GSWDKTLKVWRISDCKCLESINAHDDAIN-SVVAGFDS-LVFTGSADGTVKVWRR  305 (347)
Q Consensus       253 ~s~dg~i~vwdl~~~~~~~~~~~h~~~v~-~i~~~~~~-~l~s~~~dg~I~vwd~  305 (347)
                      ++.|++|+|||+.+++++.++++|...+. +++|+|++ +|++|+.|++|+|||+
T Consensus       301 gS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          301 ILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            99999999999999999999999987655 58999998 8999999999999996

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.91  E-value=6e-24  Score=194.72  Aligned_cols=147  Identities=13%  Similarity=0.162  Sum_probs=115.4

Q ss_pred             ecCCEEEEecCCCcEEEEeCCCc-------ceeeecCCCCeeEEEEeC--------CCCEEEEEeCCCcEEEEecCCCCC
Q 043707          131 ASGDLLYTGSDSKNIRVWKNLKE-------FSGFKSNSGLVKAIIITG--------DSNKIFTGHQDGKIRIWKVSRKNP  195 (347)
Q Consensus       131 ~~~~~l~tg~~dg~I~vwd~~~~-------~~~~~~h~~~V~~l~~sp--------~~~~l~s~~~Dg~I~vwd~~~~~~  195 (347)
                      +.+.+|++|+.|++|+|||....       +..+.+|.+.|.+++|+|        ++++|++|+.|++|+|||++++..
T Consensus        99 ~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~  178 (393)
T 4gq1_A           99 VYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGP  178 (393)
T ss_dssp             EEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEE
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCce
Confidence            34668999999999999985422       345778999999999998        788999999999999999987642


Q ss_pred             ceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCEEEEEE-
Q 043707          196 SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ-GLLYSGSWDKTLKVWRISDCKCLESI-  273 (347)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~dg~i~vwdl~~~~~~~~~-  273 (347)
                      ...                                ...|...|.+++|+|++ .+|++++.|++|++||+++++..... 
T Consensus       179 ~~~--------------------------------~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~  226 (393)
T 4gq1_A          179 ILA--------------------------------GYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENS  226 (393)
T ss_dssp             EEE--------------------------------EEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC------
T ss_pred             eee--------------------------------ecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccccc
Confidence            211                                22588999999999986 58999999999999999887643322 


Q ss_pred             ------------------------ecCCCcEEEEEeC-CCC-EEEEEeCCCcEEEEEcccCC
Q 043707          274 ------------------------NAHDDAINSVVAG-FDS-LVFTGSADGTVKVWRRELQG  309 (347)
Q Consensus       274 ------------------------~~h~~~v~~i~~~-~~~-~l~s~~~dg~I~vwd~~~~~  309 (347)
                                              .+|...+.++.|. +++ .|++++.|+++++||+....
T Consensus       227 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~  288 (393)
T 4gq1_A          227 QTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN  288 (393)
T ss_dssp             ----CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----
T ss_pred             ccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCC
Confidence                                    3567788889886 676 89999999999999997543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.8e-22  Score=199.74  Aligned_cols=193  Identities=16%  Similarity=0.268  Sum_probs=148.4

Q ss_pred             eeEeeeeccccEEEEeec----CCEEEEecCCCcEEEEeCCC----cceeeecCCCCeeEEEEeCC--CCEEEEEeCCCc
Q 043707          115 LIGSIVRKEGHIYSLAAS----GDLLYTGSDSKNIRVWKNLK----EFSGFKSNSGLVKAIIITGD--SNKIFTGHQDGK  184 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~~----~~~l~tg~~dg~I~vwd~~~----~~~~~~~h~~~V~~l~~sp~--~~~l~s~~~Dg~  184 (347)
                      .+..+.+|.+.|+++.++    +++|++|+.||.|++||...    ....+..|...|.+++|+|+  +++|++|+.||.
T Consensus        45 ~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~  124 (753)
T 3jro_A           45 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK  124 (753)
T ss_dssp             EEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSE
T ss_pred             cceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCc
Confidence            566788899999999975    78999999999999999543    45667789999999999998  999999999999


Q ss_pred             EEEEecCCCCCceeeee----------ccccc-------------ccceEEeccCCCe-EEEEeecc-----eeeeeecC
Q 043707          185 IRIWKVSRKNPSVHKRV----------GSLPT-------------FKDYVKSSVNPKN-YVEVRRNR-----NVLKIRHY  235 (347)
Q Consensus       185 I~vwd~~~~~~~~~~~~----------~~~~~-------------~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~h~  235 (347)
                      |++||++.+........          ...+.             ...++....++.. +++.....     .....+|.
T Consensus       125 I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~  204 (753)
T 3jro_A          125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS  204 (753)
T ss_dssp             EEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCS
T ss_pred             EEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCC
Confidence            99999988743222111          11221             2233333333332 23333221     12334689


Q ss_pred             CCeeEEEEcCC---CCEEEEEeCCCcEEEEeCCCCE-----EEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcc
Q 043707          236 DAVSCLSLNAE---QGLLYSGSWDKTLKVWRISDCK-----CLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRE  306 (347)
Q Consensus       236 ~~V~~l~~~~~---~~~l~s~s~dg~i~vwdl~~~~-----~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~  306 (347)
                      ..|.+++|+|+   +.+|++++.||+|++||+++++     .+.....|...|.+++|+|++ +|++|+.||.|++|++.
T Consensus       205 ~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          205 DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (753)
T ss_dssp             SCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred             CcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence            99999999999   8999999999999999998864     333345688899999999998 89999999999999997


Q ss_pred             c
Q 043707          307 L  307 (347)
Q Consensus       307 ~  307 (347)
                      .
T Consensus       285 ~  285 (753)
T 3jro_A          285 L  285 (753)
T ss_dssp             S
T ss_pred             C
Confidence            4

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.89  E-value=3.1e-21  Score=178.07  Aligned_cols=187  Identities=19%  Similarity=0.270  Sum_probs=152.3

Q ss_pred             eeccccEEEEeec--CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCC
Q 043707          120 VRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNP  195 (347)
Q Consensus       120 ~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~  195 (347)
                      .+|...|++++|+  |++|++|+.||.|+|||..  +.+..+.+|...|.++.+++  ..|++|+.|+.+++||......
T Consensus       144 ~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~--~~l~sgs~d~~i~~~d~~~~~~  221 (420)
T 4gga_A          144 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS--YILSSGSRSGHIHHHDVRVAEH  221 (420)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTSSSC
T ss_pred             cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCC--CEEEEEeCCCceeEeeecccce
Confidence            4577789999974  7899999999999999965  45778889999999998865  5999999999999999987643


Q ss_pred             ceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCE----EEE
Q 043707          196 SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK----CLE  271 (347)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~----~~~  271 (347)
                      ....                               ..+|...+.++.|++++.++++++.|+.+++||+.+++    .+.
T Consensus       222 ~~~~-------------------------------~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~  270 (420)
T 4gga_A          222 HVAT-------------------------------LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ  270 (420)
T ss_dssp             EEEE-------------------------------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSE
T ss_pred             eeEE-------------------------------ecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeee
Confidence            2221                               12589999999999999999999999999999998764    456


Q ss_pred             EEecCCCcEEEEEeCCCC--EEEE--EeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec--CC
Q 043707          272 SINAHDDAINSVVAGFDS--LVFT--GSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS--SD  345 (347)
Q Consensus       272 ~~~~h~~~v~~i~~~~~~--~l~s--~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs--~D  345 (347)
                      ....|...|.+++|+|.+  ++++  |+.|++|++||+..+.      +...+. +...|.++.|+++++.|++++  .|
T Consensus       271 ~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~------~~~~~~-~~~~v~~~~~~~~~~~lv~~sg~~d  343 (420)
T 4gga_A          271 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA------CLSAVD-AHSQVCSILWSPHYKELISGHGFAQ  343 (420)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE------EEEEEE-CSSCEEEEEEETTTTEEEEEECTTT
T ss_pred             eecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc------cceeec-cccceeeeeecCCCCeEEEEEecCC
Confidence            778899999999999975  5554  4579999999998543      233333 345899999999999888764  56


Q ss_pred             C
Q 043707          346 G  346 (347)
Q Consensus       346 G  346 (347)
                      |
T Consensus       344 ~  344 (420)
T 4gga_A          344 N  344 (420)
T ss_dssp             C
T ss_pred             C
Confidence            5

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.89  E-value=2.7e-21  Score=170.72  Aligned_cols=212  Identities=12%  Similarity=0.173  Sum_probs=150.6

Q ss_pred             EEEeecC-CEEEEecCCCcEEEEeCC--Ccceee--ecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeee
Q 043707          127 YSLAASG-DLLYTGSDSKNIRVWKNL--KEFSGF--KSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRV  201 (347)
Q Consensus       127 ~~l~~~~-~~l~tg~~dg~I~vwd~~--~~~~~~--~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~  201 (347)
                      .+|+|+. ++|++| .|++|+|||..  +..+.+  .+|...|.+++|+|++++|++|+.||+|++||+++++.......
T Consensus        29 ~~l~WS~~~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~  107 (318)
T 4ggc_A           29 NLVDWSSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS  107 (318)
T ss_dssp             BCEEECTTSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             eEEEECCCCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecC
Confidence            4566753 466665 58999999965  334444  46778899999999999999999999999999998865433221


Q ss_pred             ccc-----ccccceEEeccCCCeEEEEee----cceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCE----
Q 043707          202 GSL-----PTFKDYVKSSVNPKNYVEVRR----NRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK----  268 (347)
Q Consensus       202 ~~~-----~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~----  268 (347)
                      ...     .....++..............    .......+|...+.++.+.+++.+|++++.|++|++||+++++    
T Consensus       108 h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  187 (318)
T 4ggc_A          108 HSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV  187 (318)
T ss_dssp             CSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSC
T ss_pred             ccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccccc
Confidence            111     111122222222222222211    1123345799999999999999999999999999999998764    


Q ss_pred             EEEEEecCCCcEEEEEeCCCC----EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec-
Q 043707          269 CLESINAHDDAINSVVAGFDS----LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS-  343 (347)
Q Consensus       269 ~~~~~~~h~~~v~~i~~~~~~----~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs-  343 (347)
                      .......|...|.++.+.+++    .+++++.++.|++||.+....       .....+...+..++|+|++..+++++ 
T Consensus       188 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~~~sg  260 (318)
T 4ggc_A          188 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC-------LSAVDAHSQVCSILWSPHYKELISGHG  260 (318)
T ss_dssp             CSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE-------EEEEECSSCEEEEEEETTTTEEEEEEC
T ss_pred             ceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc-------cccccceeeeeeeeecccccceEEEEE
Confidence            345566788899999999875    345677899999999975432       22345677899999999998887654 


Q ss_pred             -CCC
Q 043707          344 -SDG  346 (347)
Q Consensus       344 -~DG  346 (347)
                       .||
T Consensus       261 ~~d~  264 (318)
T 4ggc_A          261 FAQN  264 (318)
T ss_dssp             TTTC
T ss_pred             cCCC
Confidence             566

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.89  E-value=3e-21  Score=176.14  Aligned_cols=205  Identities=14%  Similarity=0.172  Sum_probs=153.7

Q ss_pred             CcEEEEe--CCCcceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeee------------------
Q 043707          143 KNIRVWK--NLKEFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRV------------------  201 (347)
Q Consensus       143 g~I~vwd--~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~------------------  201 (347)
                      +.+++|+  ..+....+.+|.+.|.+++|+| ++++|++|+.||.|++||+.++........                  
T Consensus        23 ~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  102 (408)
T 4a11_B           23 STRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSV  102 (408)
T ss_dssp             HHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCE
T ss_pred             CcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcE
Confidence            4456665  4456677888999999999999 999999999999999999998764332221                  


Q ss_pred             ---ccccccc-ceEEeccCCC-eEEEEeecceeeeeecCCCeeEEEEcCC---CCEEEEEeCCCcEEEEeCCCCEEEEEE
Q 043707          202 ---GSLPTFK-DYVKSSVNPK-NYVEVRRNRNVLKIRHYDAVSCLSLNAE---QGLLYSGSWDKTLKVWRISDCKCLESI  273 (347)
Q Consensus       202 ---~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~V~~l~~~~~---~~~l~s~s~dg~i~vwdl~~~~~~~~~  273 (347)
                         ...+... .++....+.. .++++..........+...+.++.+++.   +.++++++.|+.|++||+++++++..+
T Consensus       103 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~  182 (408)
T 4a11_B          103 ETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL  182 (408)
T ss_dssp             EEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEE
T ss_pred             EEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeee
Confidence               1112111 1222222222 1222233344455668889999999984   459999999999999999999999999


Q ss_pred             ecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccc----------eeeehhhhhccCCcEEEEEEccCCCEEEE
Q 043707          274 NAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGT----------KHFLAQVLLKQENAITALAVNQESAVVYC  341 (347)
Q Consensus       274 ~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~----------~~~~~~~~~~h~~~V~~l~~~p~~~~l~s  341 (347)
                      ..|...|.+++|+|++  +|++++.||.|++||++......          ..........|...|++++|+|++++|++
T Consensus       183 ~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  262 (408)
T 4a11_B          183 QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLT  262 (408)
T ss_dssp             CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEE
T ss_pred             cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEE
Confidence            9999999999999987  68999999999999997554210          11123334678899999999999999999


Q ss_pred             ecCCCC
Q 043707          342 GSSDGL  347 (347)
Q Consensus       342 gs~DG~  347 (347)
                      ++.||.
T Consensus       263 ~~~dg~  268 (408)
T 4a11_B          263 VGTDNR  268 (408)
T ss_dssp             EETTSC
T ss_pred             ecCCCe
Confidence            999984

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.89  E-value=1.9e-21  Score=174.83  Aligned_cols=190  Identities=15%  Similarity=0.198  Sum_probs=141.8

Q ss_pred             EeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCCc-ceeeecCCCCeeEEEE--eCCCCEEEEEeCCCcEEEEecC
Q 043707          117 GSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKE-FSGFKSNSGLVKAIII--TGDSNKIFTGHQDGKIRIWKVS  191 (347)
Q Consensus       117 ~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~~-~~~~~~h~~~V~~l~~--sp~~~~l~s~~~Dg~I~vwd~~  191 (347)
                      ..+.+|.+.|.++.+  ++++|++|+.||.|++||.... ...+..|...|.+++|  +|++++|++++.||.|++||++
T Consensus        80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~  159 (368)
T 3mmy_A           80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR  159 (368)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSS
T ss_pred             EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECC
Confidence            678889999999987  4779999999999999996533 4456789999999999  8899999999999999999999


Q ss_pred             CCCCceeeeecccc---------------------------------------ccc-------------c-eEEeccCCC
Q 043707          192 RKNPSVHKRVGSLP---------------------------------------TFK-------------D-YVKSSVNPK  218 (347)
Q Consensus       192 ~~~~~~~~~~~~~~---------------------------------------~~~-------------~-~~~~~~~~~  218 (347)
                      +++...........                                       ...             . ++....+..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~  239 (368)
T 3mmy_A          160 SSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGR  239 (368)
T ss_dssp             CSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSE
T ss_pred             CCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCc
Confidence            87654332211100                                       000             0 111111111


Q ss_pred             eEEEE-eec----ceeeeeecCC------------CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEE
Q 043707          219 NYVEV-RRN----RNVLKIRHYD------------AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAIN  281 (347)
Q Consensus       219 ~~~~~-~~~----~~~~~~~h~~------------~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~  281 (347)
                      ..+.. ...    .......|..            .|.+++|+|++.+|++++.||.|++||+++++++..+..|...|.
T Consensus       240 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  319 (368)
T 3mmy_A          240 VAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPIS  319 (368)
T ss_dssp             EEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEE
T ss_pred             EEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCce
Confidence            11111 111    1112223433            799999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCC-EEEEEeCCCcEEEEEcc
Q 043707          282 SVVAGFDS-LVFTGSADGTVKVWRRE  306 (347)
Q Consensus       282 ~i~~~~~~-~l~s~~~dg~I~vwd~~  306 (347)
                      +++|+|++ +|++++.|+..+.|++.
T Consensus       320 ~~~~s~~g~~l~~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          320 ACCFNHNGNIFAYASSYDWSKGHEFY  345 (368)
T ss_dssp             EEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred             EEEECCCCCeEEEEeccccccccccc
Confidence            99999998 89999998866666654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.88  E-value=9.4e-21  Score=170.36  Aligned_cols=159  Identities=13%  Similarity=0.142  Sum_probs=138.9

Q ss_pred             eEeeeeccc--cEEEEee--cCCEEEEecCCCcEEEEeCCC---cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707          116 IGSIVRKEG--HIYSLAA--SGDLLYTGSDSKNIRVWKNLK---EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW  188 (347)
Q Consensus       116 i~~l~~h~~--~V~~l~~--~~~~l~tg~~dg~I~vwd~~~---~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw  188 (347)
                      +..+..|.+  .+.++.+  ++++|++|+.||.|++||...   ....+..|...|.+++|+|++++|++++.||.|++|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~  245 (369)
T 3zwl_B          166 IHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLV  245 (369)
T ss_dssp             SEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             eeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEE
Confidence            444555655  7888776  578999999999999999754   466788899999999999999999999999999999


Q ss_pred             ecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCC-----------
Q 043707          189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDK-----------  257 (347)
Q Consensus       189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg-----------  257 (347)
                      |+++++.....                                 .+...+.+++|+|++.++++++.++           
T Consensus       246 d~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  292 (369)
T 3zwl_B          246 DVSTLQVLKKY---------------------------------ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANE  292 (369)
T ss_dssp             ETTTCCEEEEE---------------------------------ECSSCEEEEEECSSSSEEEEEECCC-----------
T ss_pred             ECCCCceeeee---------------------------------cCCCCceeEEecCCCceEEEeecCCCceEEEEecCC
Confidence            99877532221                                 2678899999999999999999988           


Q ss_pred             ---cEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEccc
Q 043707          258 ---TLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRREL  307 (347)
Q Consensus       258 ---~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~  307 (347)
                         .+++||+.+++++..+.+|...|.+++|+|++ +|++++.||.|++|+++.
T Consensus       293 ~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          293 GKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             --CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred             CcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence               89999999999999999999999999999997 999999999999999974

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.88  E-value=5.9e-21  Score=176.81  Aligned_cols=161  Identities=17%  Similarity=0.279  Sum_probs=136.3

Q ss_pred             eEeeeeccccEEEEeec---CCEEEEecCCCcEEEEeCC-----CcceeeecCCCCeeEEEEeCCCC-EEEEEeCCCcEE
Q 043707          116 IGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNL-----KEFSGFKSNSGLVKAIIITGDSN-KIFTGHQDGKIR  186 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~-----~~~~~~~~h~~~V~~l~~sp~~~-~l~s~~~Dg~I~  186 (347)
                      ...+.+|.+.|.++.++   +.+|++++.||.|++||..     +....+..|...|.+++|+|++. .|++|+.||.|+
T Consensus       224 ~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~  303 (430)
T 2xyi_A          224 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA  303 (430)
T ss_dssp             SEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred             ceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEE
Confidence            45566899999999984   5699999999999999965     34566778999999999999887 688999999999


Q ss_pred             EEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCC-CEEEEEeCCCcEEEEeCC
Q 043707          187 IWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ-GLLYSGSWDKTLKVWRIS  265 (347)
Q Consensus       187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~dg~i~vwdl~  265 (347)
                      +||++........                               ...|...|.+++|+|++ .+|++++.|+.|+|||++
T Consensus       304 vwd~~~~~~~~~~-------------------------------~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~  352 (430)
T 2xyi_A          304 LWDLRNLKLKLHS-------------------------------FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS  352 (430)
T ss_dssp             EEETTCTTSCSEE-------------------------------EECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGG
T ss_pred             EEeCCCCCCCeEE-------------------------------eecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCC
Confidence            9999875321111                               11488999999999987 579999999999999998


Q ss_pred             C--------------CEEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEccc
Q 043707          266 D--------------CKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRREL  307 (347)
Q Consensus       266 ~--------------~~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~  307 (347)
                      .              .+.+..+.+|...|.+++|+|++  +|++++.||.|+||++..
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          353 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             GTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             CCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence            6              36778888999999999999986  799999999999999973

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.87  E-value=1.3e-21  Score=181.41  Aligned_cols=193  Identities=10%  Similarity=0.092  Sum_probs=138.8

Q ss_pred             cEEEEeecCCEEEEecCCCcEEEEeCCC------------cce-----eeecCCCCeeEEEEeCCCCEEE----EEeCCC
Q 043707          125 HIYSLAASGDLLYTGSDSKNIRVWKNLK------------EFS-----GFKSNSGLVKAIIITGDSNKIF----TGHQDG  183 (347)
Q Consensus       125 ~V~~l~~~~~~l~tg~~dg~I~vwd~~~------------~~~-----~~~~h~~~V~~l~~sp~~~~l~----s~~~Dg  183 (347)
                      ...++...+.++++|+.++ |+||+...            ...     ....+.+.|.+++|+|++++|+    +|+.|+
T Consensus        40 n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~  118 (434)
T 2oit_A           40 SLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGS  118 (434)
T ss_dssp             BCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEE
T ss_pred             cEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCc
Confidence            3446667788999999888 88886211            000     1123556799999999999999    788999


Q ss_pred             cEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEE
Q 043707          184 KIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVW  262 (347)
Q Consensus       184 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vw  262 (347)
                      .|+|||+++...........                +.     ......+|...|.+++|+|+ +.+|++++.||+|++|
T Consensus       119 ~v~iwd~~~~~~~~~~~~~~----------------~~-----~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iw  177 (434)
T 2oit_A          119 IIAFFDVRTFSNEAKQQKRP----------------FA-----YHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVL  177 (434)
T ss_dssp             EEEEEEHHHHHCTTCSSCCC----------------SE-----EEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred             eEEEEEccccccCCcCCcce----------------ee-----eeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEE
Confidence            99999997641000000000                00     00111248899999999997 8899999999999999


Q ss_pred             eCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehh-hh-hccCCcEEEEEEccCCCEE
Q 043707          263 RISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQ-VL-LKQENAITALAVNQESAVV  339 (347)
Q Consensus       263 dl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~-~~-~~h~~~V~~l~~~p~~~~l  339 (347)
                      |+++++.+.....|...|.+++|+|++ +|++|+.||.|++||++ ... ....... .. ..|...|.+++|++++.++
T Consensus       178 D~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~-~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l  255 (434)
T 2oit_A          178 QVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQE-KKVIPCPPFYESDHPVRVLDVLWIGTYVFA  255 (434)
T ss_dssp             EESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCE-EEEECCCTTCCTTSCEEEEEEEEEETTEEE
T ss_pred             EcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccc-cccccCCcccCCCCceeEEEEEEecCceEE
Confidence            999998887778899999999999998 99999999999999997 221 0111111 11 1244589999999988877


Q ss_pred             EE
Q 043707          340 YC  341 (347)
Q Consensus       340 ~s  341 (347)
                      ++
T Consensus       256 ~~  257 (434)
T 2oit_A          256 IV  257 (434)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.87  E-value=2.2e-21  Score=175.21  Aligned_cols=188  Identities=17%  Similarity=0.131  Sum_probs=127.8

Q ss_pred             CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeec------ccccccceEEeccCCCeEEEEe-
Q 043707          152 KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVG------SLPTFKDYVKSSVNPKNYVEVR-  224 (347)
Q Consensus       152 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-  224 (347)
                      +.+.....|...|.+++|+|++++|++|+.|+ ++|||+...+........      ..+....++...... ..+.++ 
T Consensus        10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~v~iWd   87 (355)
T 3vu4_A           10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVK-EVVHIWD   87 (355)
T ss_dssp             ---------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSST-TEEEEEE
T ss_pred             CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCc-cEEEEEE
Confidence            44556688999999999999999999998775 789998866433222111      111111121222221 233333 


Q ss_pred             --ecceeeeeecCCCeeEEEEcCCC-----------------------------------CEEEE--EeCCCcEEEEeCC
Q 043707          225 --RNRNVLKIRHYDAVSCLSLNAEQ-----------------------------------GLLYS--GSWDKTLKVWRIS  265 (347)
Q Consensus       225 --~~~~~~~~~h~~~V~~l~~~~~~-----------------------------------~~l~s--~s~dg~i~vwdl~  265 (347)
                        .......+.+...|.+++|+++.                                   .+++.  |+.||.|++||++
T Consensus        88 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~  167 (355)
T 3vu4_A           88 DVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQ  167 (355)
T ss_dssp             TTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECC
T ss_pred             CCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECC
Confidence              23344445577778888777642                                   23444  5789999999998


Q ss_pred             CCE---------------E-EEEEecCCCcEEEEEeCCCC-EEEEEeCCCc-EEEEEcccCCccceeeehhhhh-c-cCC
Q 043707          266 DCK---------------C-LESINAHDDAINSVVAGFDS-LVFTGSADGT-VKVWRRELQGKGTKHFLAQVLL-K-QEN  325 (347)
Q Consensus       266 ~~~---------------~-~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~-I~vwd~~~~~~~~~~~~~~~~~-~-h~~  325 (347)
                      +++               + +..+.+|...|.+++|+|++ +|++|+.|++ |++||++.+.      .+..+. + |..
T Consensus       168 ~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~------~~~~~~~g~h~~  241 (355)
T 3vu4_A          168 SSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV------LVREFRRGLDRA  241 (355)
T ss_dssp             C------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC------EEEEEECTTCCS
T ss_pred             CCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc------EEEEEEcCCCCC
Confidence            765               2 78889999999999999998 9999999998 9999998544      345555 4 899


Q ss_pred             cEEEEEEccCCCEEEEecCCCC
Q 043707          326 AITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       326 ~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      .|++++|+|++++|++|+.||+
T Consensus       242 ~v~~~~~s~~~~~l~s~s~d~~  263 (355)
T 3vu4_A          242 DVVDMKWSTDGSKLAVVSDKWT  263 (355)
T ss_dssp             CEEEEEECTTSCEEEEEETTCE
T ss_pred             cEEEEEECCCCCEEEEEECCCE
Confidence            9999999999999999999974

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.86  E-value=1.1e-19  Score=167.89  Aligned_cols=220  Identities=11%  Similarity=0.082  Sum_probs=157.6

Q ss_pred             eeeccccEEEEee--cCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEE-EeCCCcEEEEecCCC
Q 043707          119 IVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFT-GHQDGKIRIWKVSRK  193 (347)
Q Consensus       119 l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s-~~~Dg~I~vwd~~~~  193 (347)
                      +.+|.+.|.++.+  ++.++++++.|+.|++||..  +....+..|...+.+++|+|+++++++ ++.|+.|++||++++
T Consensus       165 ~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~  244 (433)
T 3bws_A          165 YKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK  244 (433)
T ss_dssp             HHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             ccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC
Confidence            3467778888887  57799999999999999965  446667788899999999999988854 558999999999877


Q ss_pred             CCceeeee-------cccccccceEEeccC------CCeEEEEe---ecceeeeeecCCCeeEEEEcCCCCE-EEEEeCC
Q 043707          194 NPSVHKRV-------GSLPTFKDYVKSSVN------PKNYVEVR---RNRNVLKIRHYDAVSCLSLNAEQGL-LYSGSWD  256 (347)
Q Consensus       194 ~~~~~~~~-------~~~~~~~~~~~~~~~------~~~~~~~~---~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~d  256 (347)
                      +.......       ...+....++.....      ....+.++   .........|...+.+++|+|+++. +++++.|
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~  324 (433)
T 3bws_A          245 LEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCC  324 (433)
T ss_dssp             EEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTT
T ss_pred             cEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCC
Confidence            54322211       111222222222211      11122222   2333344456678999999999975 5666889


Q ss_pred             CcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeC---------------CCcEEEEEcccCCccceeeehhhh
Q 043707          257 KTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSA---------------DGTVKVWRRELQGKGTKHFLAQVL  320 (347)
Q Consensus       257 g~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~---------------dg~I~vwd~~~~~~~~~~~~~~~~  320 (347)
                      +.|++||+++++.+..+. +...+.+++|+|++ ++++++.               ||.|++||+....      ....+
T Consensus       325 ~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~------~~~~~  397 (433)
T 3bws_A          325 SKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT------VKEFW  397 (433)
T ss_dssp             TEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE------EEEEE
T ss_pred             CEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc------EEEEe
Confidence            999999999999988887 67789999999998 6777665               5799999997543      22333


Q ss_pred             hccCCcEEEEEEccCCCEEEEecC-CC
Q 043707          321 LKQENAITALAVNQESAVVYCGSS-DG  346 (347)
Q Consensus       321 ~~h~~~V~~l~~~p~~~~l~sgs~-DG  346 (347)
                      .. ...+.+++|+|++++|++++. ||
T Consensus       398 ~~-~~~~~~~~~s~dg~~l~~~~~~d~  423 (433)
T 3bws_A          398 EA-GNQPTGLDVSPDNRYLVISDFLDH  423 (433)
T ss_dssp             EC-SSSEEEEEECTTSCEEEEEETTTT
T ss_pred             cC-CCCCceEEEcCCCCEEEEEECCCC
Confidence            33 457999999999999988765 65

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.84  E-value=6.9e-19  Score=160.18  Aligned_cols=188  Identities=12%  Similarity=0.163  Sum_probs=143.3

Q ss_pred             ceeEeeeeccccEEEEee--cCCEE-EEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEE-EeCCCcEEE
Q 043707          114 GLIGSIVRKEGHIYSLAA--SGDLL-YTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFT-GHQDGKIRI  187 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~--~~~~l-~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s-~~~Dg~I~v  187 (347)
                      .++..+..|. .+.++.+  ++++| ++++.|+.|++||..  +....+..+ ..+.+++|+|++++|+. +..|+.|++
T Consensus        23 ~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v  100 (391)
T 1l0q_A           23 KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSV  100 (391)
T ss_dssp             EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC-CCccceEECCCCCEEEEEECCCCEEEE
Confidence            3455665554 4777776  56655 788899999999964  334445444 48999999999998755 456799999


Q ss_pred             EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEE-EEEeCCCcEEEEeCCC
Q 043707          188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLL-YSGSWDKTLKVWRISD  266 (347)
Q Consensus       188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~dg~i~vwdl~~  266 (347)
                      ||+.+++.....                                 .+...+.+++|+|+++.| ++++.|+.|++||+++
T Consensus       101 ~d~~~~~~~~~~---------------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~  147 (391)
T 1l0q_A          101 IDTTSNTVAGTV---------------------------------KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT  147 (391)
T ss_dssp             EETTTTEEEEEE---------------------------------ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             EECCCCeEEEEE---------------------------------eCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence            999877432211                                 245578999999999877 6788899999999999


Q ss_pred             CEEEEEEecCCCcEEEEEeCCCC-EE-EEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707          267 CKCLESINAHDDAINSVVAGFDS-LV-FTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       267 ~~~~~~~~~h~~~v~~i~~~~~~-~l-~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      ++.+..+..+. .+.+++|+|++ .| ++++.|+.|++||++....      ... ..+...+.+++|+|++++|++++.
T Consensus       148 ~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~------~~~-~~~~~~~~~~~~~~~g~~l~~~~~  219 (391)
T 1l0q_A          148 KAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV------IDT-VKVEAAPSGIAVNPEGTKAYVTNV  219 (391)
T ss_dssp             TEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE------EEE-EECSSEEEEEEECTTSSEEEEEEE
T ss_pred             CcEEEEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE------EEE-EecCCCccceEECCCCCEEEEEec
Confidence            99999888664 46899999998 55 6778899999999975431      222 235568999999999999998873

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.84  E-value=6.2e-20  Score=170.09  Aligned_cols=192  Identities=15%  Similarity=0.036  Sum_probs=136.3

Q ss_pred             eccccEEEEeec--CCEEE----EecCCCcEEEEeCCCc-------------ceeeecCCCCeeEEEEeCC-CCEEEEEe
Q 043707          121 RKEGHIYSLAAS--GDLLY----TGSDSKNIRVWKNLKE-------------FSGFKSNSGLVKAIIITGD-SNKIFTGH  180 (347)
Q Consensus       121 ~h~~~V~~l~~~--~~~l~----tg~~dg~I~vwd~~~~-------------~~~~~~h~~~V~~l~~sp~-~~~l~s~~  180 (347)
                      .|.+.|.+++|+  +++|+    +|+.|+.|+|||....             ...+.+|...|.+++|+|+ +.+|++++
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s  169 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL  169 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence            456779888875  77888    8999999999984321             3456679999999999997 88999999


Q ss_pred             CCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 043707          181 QDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLK  260 (347)
Q Consensus       181 ~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~  260 (347)
                      .||+|++||++++.....                                ..+|...|.+++|+|++++|++|+.||+|+
T Consensus       170 ~Dg~v~iwD~~~~~~~~~--------------------------------~~~~~~~v~~v~wspdg~~lasgs~dg~v~  217 (434)
T 2oit_A          170 ADGSIAVLQVTETVKVCA--------------------------------TLPSTVAVTSVCWSPKGKQLAVGKQNGTVV  217 (434)
T ss_dssp             TTSCEEEEEESSSEEEEE--------------------------------EECGGGCEEEEEECTTSSCEEEEETTSCEE
T ss_pred             CCCeEEEEEcCCCcceee--------------------------------ccCCCCceeEEEEcCCCCEEEEEcCCCcEE
Confidence            999999999987632110                                113788999999999999999999999999


Q ss_pred             EEeCCCCEEEEEEecCC-------CcEEEEEeCCCCEEE--EEeCCCc------EEEEEcccCCcc--ceeeehhhh---
Q 043707          261 VWRISDCKCLESINAHD-------DAINSVVAGFDSLVF--TGSADGT------VKVWRRELQGKG--TKHFLAQVL---  320 (347)
Q Consensus       261 vwdl~~~~~~~~~~~h~-------~~v~~i~~~~~~~l~--s~~~dg~------I~vwd~~~~~~~--~~~~~~~~~---  320 (347)
                      +||++ ++....+..|.       ..|.++.|++++.++  .+..||.      +++|+++..+..  .........   
T Consensus       218 iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~  296 (434)
T 2oit_A          218 QYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYG  296 (434)
T ss_dssp             EECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCC
T ss_pred             EEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCC
Confidence            99998 66666665442       379999999988433  3344433      899999854321  111111100   


Q ss_pred             -hccCCcEEEEEEccCCCEEEEecCC
Q 043707          321 -LKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       321 -~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                       .....+-..+.+.++.+++++++..
T Consensus       297 ~~~~r~~~~~~~~l~dw~l~~v~s~~  322 (434)
T 2oit_A          297 SCTERQHHYYLSYIEEWDLVLAASAA  322 (434)
T ss_dssp             CCSSSCCCEEEEEEGGGTEEEEEETT
T ss_pred             CCCCcCcceeeehhccCCEEEEecCC
Confidence             0122222344455777887777653

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.83  E-value=2.5e-18  Score=156.51  Aligned_cols=189  Identities=11%  Similarity=0.097  Sum_probs=141.3

Q ss_pred             eeEeeeeccccEEEEeec--CCEE-EEecCCCcEEEEeCCCc--ceeeecCCCCeeEEEEeCCCCEE-EEEeCCCcEEEE
Q 043707          115 LIGSIVRKEGHIYSLAAS--GDLL-YTGSDSKNIRVWKNLKE--FSGFKSNSGLVKAIIITGDSNKI-FTGHQDGKIRIW  188 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~~--~~~l-~tg~~dg~I~vwd~~~~--~~~~~~h~~~V~~l~~sp~~~~l-~s~~~Dg~I~vw  188 (347)
                      ++..+..|. .+.+++++  +++| +++..++.|++||....  ...+. +...+.+++|+|++++| ++++.|+.|++|
T Consensus        66 ~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~  143 (391)
T 1l0q_A           66 VIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVI  143 (391)
T ss_dssp             EEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEE
Confidence            344444443 77777764  6666 56667899999996533  33444 44578999999999877 688889999999


Q ss_pred             ecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEE-EEEeCCCcEEEEeCCCC
Q 043707          189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLL-YSGSWDKTLKVWRISDC  267 (347)
Q Consensus       189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~dg~i~vwdl~~~  267 (347)
                      |+.+++.....                                 .....+.+++|+|+++.| ++++.|+.|++||++++
T Consensus       144 d~~~~~~~~~~---------------------------------~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~  190 (391)
T 1l0q_A          144 NTVTKAVINTV---------------------------------SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN  190 (391)
T ss_dssp             ETTTTEEEEEE---------------------------------ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             ECCCCcEEEEE---------------------------------ecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence            99876432211                                 134567899999999877 56778999999999999


Q ss_pred             EEEEEEecCCCcEEEEEeCCCC-EEEEEe---CCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEE-EEe
Q 043707          268 KCLESINAHDDAINSVVAGFDS-LVFTGS---ADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVV-YCG  342 (347)
Q Consensus       268 ~~~~~~~~h~~~v~~i~~~~~~-~l~s~~---~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l-~sg  342 (347)
                      +++..+. +...+.+++|+|++ +|++++   .++.|++||++...      ....+..|. .+.+++|+|++++| +++
T Consensus       191 ~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~------~~~~~~~~~-~~~~~~~s~dg~~l~~s~  262 (391)
T 1l0q_A          191 SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK------ITARIPVGP-DPAGIAVTPDGKKVYVAL  262 (391)
T ss_dssp             EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE------EEEEEECCS-SEEEEEECTTSSEEEEEE
T ss_pred             eEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCe------EEEEEecCC-CccEEEEccCCCEEEEEc
Confidence            9888876 45678999999998 677666   79999999997543      233444443 57999999999887 566


Q ss_pred             cCCC
Q 043707          343 SSDG  346 (347)
Q Consensus       343 s~DG  346 (347)
                      +.||
T Consensus       263 ~~d~  266 (391)
T 1l0q_A          263 SFXN  266 (391)
T ss_dssp             TTTT
T ss_pred             CCCC
Confidence            7675

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.83  E-value=1e-18  Score=161.11  Aligned_cols=191  Identities=13%  Similarity=-0.001  Sum_probs=146.9

Q ss_pred             ceeEeeeeccccEEEEee--cCCEEEEecCCC---cEEEEeCCC-cceeeecCCCCeeEEEEeCCCCEEE-EEeCCCc--
Q 043707          114 GLIGSIVRKEGHIYSLAA--SGDLLYTGSDSK---NIRVWKNLK-EFSGFKSNSGLVKAIIITGDSNKIF-TGHQDGK--  184 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg---~I~vwd~~~-~~~~~~~h~~~V~~l~~sp~~~~l~-s~~~Dg~--  184 (347)
                      +.+..+..|.+.|.++++  +|++|++++.++   .|++||... ....+..|.+.+.+++|+|+|++|+ +++.|+.  
T Consensus       169 ~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~  248 (415)
T 2hqs_A          169 YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLN  248 (415)
T ss_dssp             CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred             CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCce
Confidence            356777889999988876  578999998875   999999653 3445677888999999999999887 6766665  


Q ss_pred             EEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CC--cEEE
Q 043707          185 IRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DK--TLKV  261 (347)
Q Consensus       185 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg--~i~v  261 (347)
                      |++||+.+++..   .+                              ..|...+.+++|+|+++.|+.++. ++  .|.+
T Consensus       249 i~~~d~~~~~~~---~l------------------------------~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~  295 (415)
T 2hqs_A          249 LYVMDLASGQIR---QV------------------------------TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYK  295 (415)
T ss_dssp             EEEEETTTCCEE---EC------------------------------CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred             EEEEECCCCCEE---eC------------------------------cCCCCcccceEECCCCCEEEEEECCCCCcEEEE
Confidence            999999876531   11                              137778999999999998888876 45  6778


Q ss_pred             EeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCC---CcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCC
Q 043707          262 WRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSAD---GTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESA  337 (347)
Q Consensus       262 wdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~d---g~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~  337 (347)
                      ||+.+++. ..+..+...+.+++|+|++ +|++++.+   ..|++||+..+..       ..+..+. .+.+++|+|+|+
T Consensus       296 ~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-------~~l~~~~-~~~~~~~spdg~  366 (415)
T 2hqs_A          296 VNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-------QVLSSTF-LDETPSLAPNGT  366 (415)
T ss_dssp             EETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-------EECCCSS-SCEEEEECTTSS
T ss_pred             EECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-------EEecCCC-CcCCeEEcCCCC
Confidence            89987763 4556677889999999998 66666543   5899999975431       2334444 899999999999


Q ss_pred             EEEEecCCC
Q 043707          338 VVYCGSSDG  346 (347)
Q Consensus       338 ~l~sgs~DG  346 (347)
                      +|++++.|+
T Consensus       367 ~l~~~s~~~  375 (415)
T 2hqs_A          367 MVIYSSSQG  375 (415)
T ss_dssp             EEEEEEEET
T ss_pred             EEEEEEcCC
Confidence            999988765

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.83  E-value=3.2e-19  Score=164.41  Aligned_cols=172  Identities=10%  Similarity=-0.047  Sum_probs=134.3

Q ss_pred             CCEEEEecCC------CcEEEEeCC-CcceeeecCCCCeeEEEEeCCCCEEEEEeCCC---cEEEEecCCCCCceeeeec
Q 043707          133 GDLLYTGSDS------KNIRVWKNL-KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDG---KIRIWKVSRKNPSVHKRVG  202 (347)
Q Consensus       133 ~~~l~tg~~d------g~I~vwd~~-~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg---~I~vwd~~~~~~~~~~~~~  202 (347)
                      +..++.++.+      +.|++||.. .....+..|...|.+++|+|+|++|++++.|+   .|++||+.+++...     
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-----  217 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-----  217 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-----
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-----
Confidence            5566665554      799999965 45677888999999999999999999999885   99999998875321     


Q ss_pred             ccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEE-EEeCCCc--EEEEeCCCCEEEEEEecCCCc
Q 043707          203 SLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLY-SGSWDKT--LKVWRISDCKCLESINAHDDA  279 (347)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg~--i~vwdl~~~~~~~~~~~h~~~  279 (347)
                                                  ...|...+.+++|+|+++.|+ +++.|+.  |++||+++++. ..+..|...
T Consensus       218 ----------------------------l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~  268 (415)
T 2hqs_A          218 ----------------------------VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSN  268 (415)
T ss_dssp             ----------------------------EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSC
T ss_pred             ----------------------------eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCc
Confidence                                        113677899999999999777 6666665  99999998776 567778889


Q ss_pred             EEEEEeCCCC-EEEEEeC-CC--cEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707          280 INSVVAGFDS-LVFTGSA-DG--TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       280 v~~i~~~~~~-~l~s~~~-dg--~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                      +.+++|+|++ .|++++. ++  .|++||+..+.       ...+..+...+.+++|+|+|++|++++.+
T Consensus       269 ~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~-------~~~l~~~~~~~~~~~~spdG~~l~~~~~~  331 (415)
T 2hqs_A          269 NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-------PQRITWEGSQNQDADVSSDGKFMVMVSSN  331 (415)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-------CEECCCSSSEEEEEEECTTSSEEEEEEEC
T ss_pred             ccceEECCCCCEEEEEECCCCCcEEEEEECCCCC-------EEEEecCCCcccCeEECCCCCEEEEEECc
Confidence            9999999998 6776665 55  56777776432       22344566789999999999999988765

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.82  E-value=1.5e-18  Score=160.05  Aligned_cols=221  Identities=11%  Similarity=0.122  Sum_probs=155.3

Q ss_pred             eEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCCc--ce-----eeecCCCCeeEEEEeCCCCEEEEEeCCCcEE
Q 043707          116 IGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKE--FS-----GFKSNSGLVKAIIITGDSNKIFTGHQDGKIR  186 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~~--~~-----~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~  186 (347)
                      +..+..+. .+.++.+  ++.++++++.++.|++||....  ..     .+.+|.+.|.+++|+++++++++++.|+.|+
T Consensus       116 ~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~  194 (433)
T 3bws_A          116 ISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVH  194 (433)
T ss_dssp             EEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEE
T ss_pred             EEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEE
Confidence            44444443 3335554  4668888899999999996532  22     3457889999999999999999999999999


Q ss_pred             EEecCCCCCceeeee--------cccccccceEEeccCCCeEE--EEeecceeeeeecCCCeeEEEEcCCCCEEEEEe--
Q 043707          187 IWKVSRKNPSVHKRV--------GSLPTFKDYVKSSVNPKNYV--EVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGS--  254 (347)
Q Consensus       187 vwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s--  254 (347)
                      +||+++++.......        ...+....++........+.  +...........+...+.+++|+|++++|++++  
T Consensus       195 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~  274 (433)
T 3bws_A          195 VFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFS  274 (433)
T ss_dssp             EEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEE
T ss_pred             EEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECC
Confidence            999988764332221        11122222323332222222  222223333344556799999999999999988  


Q ss_pred             ------CCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCc
Q 043707          255 ------WDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENA  326 (347)
Q Consensus       255 ------~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~  326 (347)
                            .|+.|++||+++++.+..+. |...+.+++|+|++  ++++++.|+.|++||+....      ....+ .+...
T Consensus       275 ~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~------~~~~~-~~~~~  346 (433)
T 3bws_A          275 ASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK------VQKSI-PVFDK  346 (433)
T ss_dssp             SCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE------EEEEE-ECSSS
T ss_pred             CCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc------EEEEe-cCCCC
Confidence                  58899999999998877764 55688999999998  55677899999999997432      22222 35678


Q ss_pred             EEEEEEccCCCEEEEecCC
Q 043707          327 ITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       327 V~~l~~~p~~~~l~sgs~D  345 (347)
                      +.+++|+|++++|++++.+
T Consensus       347 ~~~~~~s~dg~~l~~~~~~  365 (433)
T 3bws_A          347 PNTIALSPDGKYLYVSCRG  365 (433)
T ss_dssp             EEEEEECTTSSEEEEEECC
T ss_pred             CCeEEEcCCCCEEEEEecC
Confidence            9999999999998888763

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.78  E-value=2.9e-17  Score=142.68  Aligned_cols=195  Identities=10%  Similarity=0.045  Sum_probs=141.8

Q ss_pred             cceeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCC---cceeeecC-CCCeeEEEEeCCCCEEEEEe--CCCc
Q 043707          113 NGLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK---EFSGFKSN-SGLVKAIIITGDSNKIFTGH--QDGK  184 (347)
Q Consensus       113 ~~~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~---~~~~~~~h-~~~V~~l~~sp~~~~l~s~~--~Dg~  184 (347)
                      .+.+..+..|.+.|.++.+  ++++|++++ ++.|++||...   .......+ ...|.+++|+|++++|++++  .++.
T Consensus        31 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~  109 (297)
T 2ojh_A           31 TRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGK  109 (297)
T ss_dssp             TTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSS
T ss_pred             CCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCc
Confidence            3445567778888888876  577888887 78999999655   33334444 36789999999999999999  4456


Q ss_pred             EEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEE-EEeCCCcEEEEe
Q 043707          185 IRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLY-SGSWDKTLKVWR  263 (347)
Q Consensus       185 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg~i~vwd  263 (347)
                      ++||.++...... ..+                               .+...+.+++|+|+++.|+ ++..|+.++||+
T Consensus       110 ~~l~~~~~~~~~~-~~~-------------------------------~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~  157 (297)
T 2ojh_A          110 SAIYLLPSTGGTP-RLM-------------------------------TKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYS  157 (297)
T ss_dssp             CEEEEEETTCCCC-EEC-------------------------------CSSSSEEEEEECTTSSEEEEEEEETTEEEEEE
T ss_pred             ceEEEEECCCCce-EEe-------------------------------ecCCCccceEECCCCCEEEEEECCCCceEEEE
Confidence            6666654322111 111                               1333588899999999777 778899999998


Q ss_pred             CC-CCEEEEEEecCCCcEEEEEeCCCC-EEEEEe-CCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEE
Q 043707          264 IS-DCKCLESINAHDDAINSVVAGFDS-LVFTGS-ADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVY  340 (347)
Q Consensus       264 l~-~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~-~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~  340 (347)
                      ++ .......+..+...+.++.|+|++ +|+.++ .++.+++|++.....     ....+..|...+..++|+|++++|+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~s~dg~~l~  232 (297)
T 2ojh_A          158 MDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS-----SVERITDSAYGDWFPHPSPSGDKVV  232 (297)
T ss_dssp             EETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS-----CEEECCCCSEEEEEEEECTTSSEEE
T ss_pred             EECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCC-----CcEEEecCCcccCCeEECCCCCEEE
Confidence            63 233445666788889999999998 555544 699999999874333     2345566777899999999999999


Q ss_pred             EecCC
Q 043707          341 CGSSD  345 (347)
Q Consensus       341 sgs~D  345 (347)
                      +++.|
T Consensus       233 ~~~~~  237 (297)
T 2ojh_A          233 FVSYD  237 (297)
T ss_dssp             EEEEE
T ss_pred             EEEcC
Confidence            88765

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.77  E-value=1.5e-16  Score=151.43  Aligned_cols=227  Identities=11%  Similarity=0.083  Sum_probs=154.5

Q ss_pred             eeEeee-eccccEEEEeecCCEEEEecCCCcEEEEeC--CC--cceeeecCCCCeeEEEEeC----CCCEEEEEeC-CCc
Q 043707          115 LIGSIV-RKEGHIYSLAASGDLLYTGSDSKNIRVWKN--LK--EFSGFKSNSGLVKAIIITG----DSNKIFTGHQ-DGK  184 (347)
Q Consensus       115 ~i~~l~-~h~~~V~~l~~~~~~l~tg~~dg~I~vwd~--~~--~~~~~~~h~~~V~~l~~sp----~~~~l~s~~~-Dg~  184 (347)
                      ++.++. +|..+..+++++|++|++++.|++|++||.  .+  .+..+. +...+..++|+|    +|+++++++. +++
T Consensus       171 ~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~  249 (543)
T 1nir_A          171 IVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQ  249 (543)
T ss_dssp             EEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSE
T ss_pred             EEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCe
Confidence            566666 344233445568999999999999999998  33  234444 455689999999    9999999884 899


Q ss_pred             EEEEecCCCCCceeeeecc-------------------cccccceEEeccCCCeEEEEeecc----eeeeeecCCCeeEE
Q 043707          185 IRIWKVSRKNPSVHKRVGS-------------------LPTFKDYVKSSVNPKNYVEVRRNR----NVLKIRHYDAVSCL  241 (347)
Q Consensus       185 I~vwd~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~h~~~V~~l  241 (347)
                      |.|||..+.+.........                   .+....++........+..+....    ....+.+...+..+
T Consensus       250 v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~  329 (543)
T 1nir_A          250 FAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDG  329 (543)
T ss_dssp             EEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCE
T ss_pred             EEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCc
Confidence            9999998876544333211                   011112222222222222222111    11234566778899


Q ss_pred             EEcCCCCEEEEEe-CCCcEEEEeCCCCEEEEEEec----CCCcEEEEEeCCC-C-EEEEEe-CCCcEEEEEcccCCcc-c
Q 043707          242 SLNAEQGLLYSGS-WDKTLKVWRISDCKCLESINA----HDDAINSVVAGFD-S-LVFTGS-ADGTVKVWRRELQGKG-T  312 (347)
Q Consensus       242 ~~~~~~~~l~s~s-~dg~i~vwdl~~~~~~~~~~~----h~~~v~~i~~~~~-~-~l~s~~-~dg~I~vwd~~~~~~~-~  312 (347)
                      .|+|++++|++++ .+++|.+||+.+++++..+..    |.+....+ ++|+ + +++++. .|++|.|||+...+.. .
T Consensus       330 ~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~  408 (543)
T 1nir_A          330 GWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY  408 (543)
T ss_dssp             EECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTT
T ss_pred             eECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchh
Confidence            9999999877655 589999999999999998874    54433333 4676 4 556665 6899999999863211 1


Q ss_pred             eeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          313 KHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       313 ~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                      ....++.+..|...+..|+++|++++|++++
T Consensus       409 ~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~  439 (543)
T 1nir_A          409 AWKKVAELQGQGGGSLFIKTHPKSSHLYVDT  439 (543)
T ss_dssp             BTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred             cCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence            1346778888888899999999999999986

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.74  E-value=6e-17  Score=140.62  Aligned_cols=187  Identities=10%  Similarity=-0.001  Sum_probs=134.2

Q ss_pred             ccEEE--EeecCCEEEEec--CCCcEEEE--eCCC-cceeeecCCCCeeEEEEeCCCCEEE-EEeCCCcEEEEecCCCCC
Q 043707          124 GHIYS--LAASGDLLYTGS--DSKNIRVW--KNLK-EFSGFKSNSGLVKAIIITGDSNKIF-TGHQDGKIRIWKVSRKNP  195 (347)
Q Consensus       124 ~~V~~--l~~~~~~l~tg~--~dg~I~vw--d~~~-~~~~~~~h~~~V~~l~~sp~~~~l~-s~~~Dg~I~vwd~~~~~~  195 (347)
                      ..|.+  +.+++++|++++  .++.+.||  +... ....+..+ ..+..++|+|++++|+ ++..|+.++||+++....
T Consensus        85 ~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~  163 (297)
T 2ojh_A           85 ICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG  163 (297)
T ss_dssp             CBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC
T ss_pred             ccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCC
Confidence            34444  445788888888  33455555  4332 23333333 3589999999999877 788999999999754321


Q ss_pred             ceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEe-CCCcEEEEeCC-CCEEEEEE
Q 043707          196 SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRIS-DCKCLESI  273 (347)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~vwdl~-~~~~~~~~  273 (347)
                      ....                               ...+...+.+++|+|++++|+.++ .++.++||++. .+..+..+
T Consensus       164 ~~~~-------------------------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~  212 (297)
T 2ojh_A          164 VETR-------------------------------LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI  212 (297)
T ss_dssp             CEEE-------------------------------CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC
T ss_pred             cceE-------------------------------cccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE
Confidence            1111                               113667899999999999887766 58999999986 56667778


Q ss_pred             ecCCCcEEEEEeCCCC-EEEEEeCC-----------CcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEE
Q 043707          274 NAHDDAINSVVAGFDS-LVFTGSAD-----------GTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYC  341 (347)
Q Consensus       274 ~~h~~~v~~i~~~~~~-~l~s~~~d-----------g~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s  341 (347)
                      ..|...+..+.|+|++ +|++++.+           +.|++||+.....    ..+..+..|...+..++|+|++++|++
T Consensus       213 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~----~~~~~~~~~~~~~~~~~~spdg~~l~~  288 (297)
T 2ojh_A          213 TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV----ETLFDLFGGQGTMNSPNWSPDGDEFAY  288 (297)
T ss_dssp             CCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC----EEEEEEEESTTTSCSCCBCTTSSEEEE
T ss_pred             ecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc----eeeeccCCCCcccccceECCCCCEEEE
Confidence            8888889999999998 67666655           5699999975432    123334467888999999999999988


Q ss_pred             ecCCC
Q 043707          342 GSSDG  346 (347)
Q Consensus       342 gs~DG  346 (347)
                      ++.|.
T Consensus       289 ~~~~~  293 (297)
T 2ojh_A          289 VRYFP  293 (297)
T ss_dssp             EEECC
T ss_pred             EEecc
Confidence            87653

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.74  E-value=6.7e-17  Score=153.82  Aligned_cols=179  Identities=8%  Similarity=0.088  Sum_probs=138.2

Q ss_pred             EEEEeecCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEec--CCCCCceeeee
Q 043707          126 IYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKV--SRKNPSVHKRV  201 (347)
Q Consensus       126 V~~l~~~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~--~~~~~~~~~~~  201 (347)
                      ...+.+++.++++++.|++|.+||..  +.+..+..+.. +..++|+|++++|++++.|++|++||+  .+.+....   
T Consensus       142 ~~~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~---  217 (543)
T 1nir_A          142 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE---  217 (543)
T ss_dssp             CSCCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE---
T ss_pred             ccccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEE---
Confidence            34466778899999999999999954  44566663333 899999999999999999999999999  54432111   


Q ss_pred             cccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC----CCCEEEEEeC-CCcEEEEeCCCCEEEEEEecC
Q 043707          202 GSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA----EQGLLYSGSW-DKTLKVWRISDCKCLESINAH  276 (347)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~----~~~~l~s~s~-dg~i~vwdl~~~~~~~~~~~h  276 (347)
                                                    +.+...+..++|+|    ++++|++++. +++|.|||..+++++..+..+
T Consensus       218 ------------------------------i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~  267 (543)
T 1nir_A          218 ------------------------------IKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR  267 (543)
T ss_dssp             ------------------------------EECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECC
T ss_pred             ------------------------------EecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeeccc
Confidence                                          12455678999999    9999999885 899999999999999988752


Q ss_pred             -----------CCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          277 -----------DDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       277 -----------~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                                 ...+..+.+++++  ++++...+++|.+||+.....     +......+...+.+++|+|++++|++++
T Consensus       268 g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~-----l~~~~i~~~~~~~~~~~spdg~~l~va~  342 (543)
T 1nir_A          268 GMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN-----LTVTSIGAAPFLHDGGWDSSHRYFMTAA  342 (543)
T ss_dssp             EECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSS-----CEEEEEECCSSCCCEEECTTSCEEEEEE
T ss_pred             CcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCc-----ceeEEeccCcCccCceECCCCCEEEEEe
Confidence                       2368899999976  777888999999999975432     1111123456788999999999877654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.70  E-value=1.6e-15  Score=155.35  Aligned_cols=220  Identities=11%  Similarity=0.028  Sum_probs=154.5

Q ss_pred             eEeeeeccc-cEEEEeecCCEEEEecCCCcEEEEeCCC-cceeeec-----------CCCCeeEEEEe-CCCCEEEEEeC
Q 043707          116 IGSIVRKEG-HIYSLAASGDLLYTGSDSKNIRVWKNLK-EFSGFKS-----------NSGLVKAIIIT-GDSNKIFTGHQ  181 (347)
Q Consensus       116 i~~l~~h~~-~V~~l~~~~~~l~tg~~dg~I~vwd~~~-~~~~~~~-----------h~~~V~~l~~s-p~~~~l~s~~~  181 (347)
                      ...+..|.. ...+++++|++|+.+. ++.|++|+... .+..+..           |...+.+++|+ |+|++|++++ 
T Consensus       238 ~~~l~~~~~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-  315 (1045)
T 1k32_A          238 LRKHTSFTDYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-  315 (1045)
T ss_dssp             CEECCCCCSSCEEEEEESSSCEEEEE-TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-
T ss_pred             ceEecCCCCcceeeEcCCCCEEEEEe-CCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-
Confidence            344444443 3557788999888874 88999999632 2222222           33479999999 9999999888 


Q ss_pred             CCcEEEEecCCCCCceee--------eecccccccceEEeccCCCeEEEEee---cceeeeeecCCCeeEEEEcCCCCEE
Q 043707          182 DGKIRIWKVSRKNPSVHK--------RVGSLPTFKDYVKSSVNPKNYVEVRR---NRNVLKIRHYDAVSCLSLNAEQGLL  250 (347)
Q Consensus       182 Dg~I~vwd~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l  250 (347)
                      ++.|++|++..+......        .+... ....++.... ...++.+..   ........|...+..++|+|++++|
T Consensus       316 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~-~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~l  393 (1045)
T 1k32_A          316 RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR-EGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFA  393 (1045)
T ss_dssp             TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEET-TEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEE
T ss_pred             cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEEC-CCceEEEEECCCCCceEecCCccceeeeEECCCCCEE
Confidence            889999999876432110        01111 1112222222 222221222   2222233677889999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCC----------CcEEEEEcccCCccceeeehhh
Q 043707          251 YSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSAD----------GTVKVWRRELQGKGTKHFLAQV  319 (347)
Q Consensus       251 ~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~d----------g~I~vwd~~~~~~~~~~~~~~~  319 (347)
                      ++++.++.|++||+.+++....+..|...+..++|+||+ +|++++.+          +.|++||+..+.       ...
T Consensus       394 a~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-------~~~  466 (1045)
T 1k32_A          394 VVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-------IFA  466 (1045)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-------EEE
T ss_pred             EEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-------EEE
Confidence            999999999999999999888887899999999999998 67766654          499999997431       345


Q ss_pred             hhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          320 LLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       320 ~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      +..|...+..++|+|+|++|+.++.++
T Consensus       467 l~~~~~~~~~~~~spdG~~l~~~s~~~  493 (1045)
T 1k32_A          467 ATTENSHDYAPAFDADSKNLYYLSYRS  493 (1045)
T ss_dssp             CSCSSSBEEEEEECTTSCEEEEEESCC
T ss_pred             eeCCCcccCCceEcCCCCEEEEEeccc
Confidence            566777899999999999999888754

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.69  E-value=9.8e-16  Score=136.23  Aligned_cols=180  Identities=12%  Similarity=0.244  Sum_probs=123.3

Q ss_pred             EEEEecCCCcEEEEeCC--Cc--ceeeecCCCCeeEEEEeCCCCEEEEEeCC-CcEEEEecC--CCCCceeeeecccccc
Q 043707          135 LLYTGSDSKNIRVWKNL--KE--FSGFKSNSGLVKAIIITGDSNKIFTGHQD-GKIRIWKVS--RKNPSVHKRVGSLPTF  207 (347)
Q Consensus       135 ~l~tg~~dg~I~vwd~~--~~--~~~~~~h~~~V~~l~~sp~~~~l~s~~~D-g~I~vwd~~--~~~~~~~~~~~~~~~~  207 (347)
                      ++++++.|+.|++|+..  ..  ......+...+.+++|+|++++|++++.+ +.|++|+++  +++.......      
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~------   80 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES------   80 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE------
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccc------
Confidence            45555889999999864  21  22224567789999999999999998887 999999997  3332111111      


Q ss_pred             cceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeCC---CCEEEEEEecCCCcEEEE
Q 043707          208 KDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRIS---DCKCLESINAHDDAINSV  283 (347)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~vwdl~---~~~~~~~~~~h~~~v~~i  283 (347)
                                               .....+..++|+|++++|++++. ++.|.+||+.   ..+.+..+..+ ..+.++
T Consensus        81 -------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~  134 (343)
T 1ri6_A           81 -------------------------ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSA  134 (343)
T ss_dssp             -------------------------ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCC
T ss_pred             -------------------------ccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEE
Confidence                                     12337889999999998877765 8889999994   44455555544 458889


Q ss_pred             EeCCCC-EEEEEe-CCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec-CCC
Q 043707          284 VAGFDS-LVFTGS-ADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS-SDG  346 (347)
Q Consensus       284 ~~~~~~-~l~s~~-~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs-~DG  346 (347)
                      +|+|++ ++++++ .++.|++||+...++................+..++|+|++++|++++ .++
T Consensus       135 ~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~  200 (343)
T 1ri6_A          135 NISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNS  200 (343)
T ss_dssp             EECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred             EECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCC
Confidence            999998 666666 899999999975332110000011112345788999999999776554 443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.69  E-value=2e-16  Score=155.57  Aligned_cols=182  Identities=8%  Similarity=0.014  Sum_probs=127.4

Q ss_pred             ecCCEEEEecCCCcEEEEeCC--CcceeeecCCC---CeeEEEEeCCCCEEEEEeCC---------CcEEEEecCCCCCc
Q 043707          131 ASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSG---LVKAIIITGDSNKIFTGHQD---------GKIRIWKVSRKNPS  196 (347)
Q Consensus       131 ~~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~---~V~~l~~sp~~~~l~s~~~D---------g~I~vwd~~~~~~~  196 (347)
                      ++|+++++ +.||+|++||..  +....+..|..   .|.+++|+|||++|++++.+         +.|++||+.+++..
T Consensus        26 pdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  104 (723)
T 1xfd_A           26 SDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ  104 (723)
T ss_dssp             SSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE
T ss_pred             CCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE
Confidence            34555555 578999999954  33445555554   49999999999999999875         77889999987641


Q ss_pred             eeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecC
Q 043707          197 VHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH  276 (347)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h  276 (347)
                      ....   ..                           .|...+..++|+|||+.|+.++. +.|++||+.+++.......+
T Consensus       105 ~l~~---~~---------------------------~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~  153 (723)
T 1xfd_A          105 SLDP---PE---------------------------VSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTG  153 (723)
T ss_dssp             ECCC---TT---------------------------CCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCC
T ss_pred             eccC---Cc---------------------------cccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCC
Confidence            1111   00                           25556889999999999999885 79999999988776665554


Q ss_pred             CCcE------------------EEEEeCCCC-EEEEEeCCC----------------------------------cEEEE
Q 043707          277 DDAI------------------NSVVAGFDS-LVFTGSADG----------------------------------TVKVW  303 (347)
Q Consensus       277 ~~~v------------------~~i~~~~~~-~l~s~~~dg----------------------------------~I~vw  303 (347)
                      ...+                  .++.|+||| .|++++.|+                                  .|++|
T Consensus       154 ~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~  233 (723)
T 1xfd_A          154 KEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVI  233 (723)
T ss_dssp             BTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEE
T ss_pred             CCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEE
Confidence            4333                  789999998 777766443                                  78999


Q ss_pred             EcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707          304 RRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       304 d~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      |+..............+..+...+..++|+|||++|++.+.
T Consensus       234 d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~  274 (723)
T 1xfd_A          234 GLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLN  274 (723)
T ss_dssp             ESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEE
T ss_pred             ECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEc
Confidence            98754310000001112234678999999999998877643

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.69  E-value=1.1e-14  Score=129.30  Aligned_cols=220  Identities=9%  Similarity=0.173  Sum_probs=133.6

Q ss_pred             eccccEEEEe--ecCCEEEEecCC-CcEEEEeCC--C-c---ceeeecCCCCeeEEEEeCCCCEEEEEeC-CCcEEEEec
Q 043707          121 RKEGHIYSLA--ASGDLLYTGSDS-KNIRVWKNL--K-E---FSGFKSNSGLVKAIIITGDSNKIFTGHQ-DGKIRIWKV  190 (347)
Q Consensus       121 ~h~~~V~~l~--~~~~~l~tg~~d-g~I~vwd~~--~-~---~~~~~~h~~~V~~l~~sp~~~~l~s~~~-Dg~I~vwd~  190 (347)
                      .|...+.+++  +++++|++++.+ +.|++|++.  . .   +..+..+ ..+.+++|+|++++|++++. ++.|++||+
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~  113 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRL  113 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence            3555555454  568888887776 999999864  1 2   2233333 37899999999998877664 889999999


Q ss_pred             CCCC---Cceeee-------ecccccccceEEec-cCCC-eEEEEeeccee-------eeeecCCCeeEEEEcCCCCEEE
Q 043707          191 SRKN---PSVHKR-------VGSLPTFKDYVKSS-VNPK-NYVEVRRNRNV-------LKIRHYDAVSCLSLNAEQGLLY  251 (347)
Q Consensus       191 ~~~~---~~~~~~-------~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~-------~~~~h~~~V~~l~~~~~~~~l~  251 (347)
                      ..+.   ......       +...+....++... .+.. .++.+......       ........+..++|+|++++|+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~  193 (343)
T 1ri6_A          114 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY  193 (343)
T ss_dssp             ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEE
T ss_pred             CCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEE
Confidence            5221   111111       11112222233333 2222 22223221211       1122345788999999999776


Q ss_pred             EEe-CCCcEEEEeCCC--CE--EEEEEec---C---CCcEEEEEeCCCC-EEE-EEeCCCcEEEEEcccCCccceeeehh
Q 043707          252 SGS-WDKTLKVWRISD--CK--CLESINA---H---DDAINSVVAGFDS-LVF-TGSADGTVKVWRRELQGKGTKHFLAQ  318 (347)
Q Consensus       252 s~s-~dg~i~vwdl~~--~~--~~~~~~~---h---~~~v~~i~~~~~~-~l~-s~~~dg~I~vwd~~~~~~~~~~~~~~  318 (347)
                      +++ .++.|.+||+..  ++  .+..+..   .   ...+..++|+|++ +|+ ++..++.|++||+.....  ......
T Consensus       194 ~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~--~~~~~~  271 (343)
T 1ri6_A          194 CVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS--VLSKEG  271 (343)
T ss_dssp             EEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC--CEEEEE
T ss_pred             EEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCC--ceEEee
Confidence            555 789999999953  32  2333321   1   2356789999998 555 556899999999973221  112233


Q ss_pred             hhhccCCcEEEEEEccCCCEEEEecC
Q 043707          319 VLLKQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       319 ~~~~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      .+..+.. +..++|+|++++|++++.
T Consensus       272 ~~~~~~~-~~~~~~s~dg~~l~~~~~  296 (343)
T 1ri6_A          272 FQPTETQ-PRGFNVDHSGKYLIAAGQ  296 (343)
T ss_dssp             EEECSSS-CCCEEECTTSSEEEEECT
T ss_pred             eecCCCc-cceEEECCCCCEEEEecC
Confidence            3333333 889999999998888874

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.68  E-value=7.4e-15  Score=130.33  Aligned_cols=230  Identities=7%  Similarity=0.063  Sum_probs=140.4

Q ss_pred             eEeeeeccccE-EEEeecCCEEEEe-cCCCcEEEEeCC--Cc-ceeeecCCCCeeEEEEeCCCCEEEEEeCCC---cEEE
Q 043707          116 IGSIVRKEGHI-YSLAASGDLLYTG-SDSKNIRVWKNL--KE-FSGFKSNSGLVKAIIITGDSNKIFTGHQDG---KIRI  187 (347)
Q Consensus       116 i~~l~~h~~~V-~~l~~~~~~l~tg-~~dg~I~vwd~~--~~-~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg---~I~v  187 (347)
                      +..+..+...+ .++.+++++|+++ ..++.|++||..  +. ...+..+..+..+++|+|++++++++..++   .|++
T Consensus        33 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v  112 (331)
T 3u4y_A           33 LNQITLGYDFVDTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQS  112 (331)
T ss_dssp             EEEEECCCCEEEEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEE
T ss_pred             eeeEEccCCcceEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEE
Confidence            44444444444 3344567755555 448999999964  33 445556666666699999999999655553   8999


Q ss_pred             EecCCCCCceeeeec-------ccccccceEEeccCCCe---EEEEeecce-----eeeeecCCCeeEEEEcCCCCEEEE
Q 043707          188 WKVSRKNPSVHKRVG-------SLPTFKDYVKSSVNPKN---YVEVRRNRN-----VLKIRHYDAVSCLSLNAEQGLLYS  252 (347)
Q Consensus       188 wd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~h~~~V~~l~~~~~~~~l~s  252 (347)
                      ||+.+++........       ..|....++........   .+.+.....     .........+..++|+|++++|+.
T Consensus       113 ~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v  192 (331)
T 3u4y_A          113 YSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFV  192 (331)
T ss_dssp             EETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEE
T ss_pred             EECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEE
Confidence            999887643332221       12233333333333222   222211111     122234566899999999996655


Q ss_pred             Ee-CCCcEEEEeCCCCEE---EEEEecCCCcEEEEEeCCCC-EEEE-EeCCCcEEEEEcccCCccceeeehhhhh---cc
Q 043707          253 GS-WDKTLKVWRISDCKC---LESINAHDDAINSVVAGFDS-LVFT-GSADGTVKVWRRELQGKGTKHFLAQVLL---KQ  323 (347)
Q Consensus       253 ~s-~dg~i~vwdl~~~~~---~~~~~~h~~~v~~i~~~~~~-~l~s-~~~dg~I~vwd~~~~~~~~~~~~~~~~~---~h  323 (347)
                      ++ .++.|.+||+.+++.   +..+..+ ..+..++|+|++ ++++ ...++.|.+||+..+...........+.   ..
T Consensus       193 ~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  271 (331)
T 3u4y_A          193 ANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRP  271 (331)
T ss_dssp             EETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGG
T ss_pred             EeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCC
Confidence            54 689999999998887   7777744 567889999998 4544 4468899999997543211111111111   11


Q ss_pred             CCcEEEEEEccCCCEEEEecCCC
Q 043707          324 ENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       324 ~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      ...+..++|+|++++|++++.++
T Consensus       272 ~~~~~~~~~spdg~~l~v~~~~~  294 (331)
T 3u4y_A          272 LFGANQMALNKTETKLFISANIS  294 (331)
T ss_dssp             GTTCCCEEECTTSSEEEEEETTT
T ss_pred             cccccceEECCCCCEEEEecCCC
Confidence            12236699999999887766543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.68  E-value=2e-14  Score=129.40  Aligned_cols=196  Identities=11%  Similarity=0.152  Sum_probs=127.7

Q ss_pred             ccccEEEEeecCCEEEEec-CCCcEEEEeCCCc--ce---eeec-----------CCCCeeEEEEeCCCCEEEEEe-CCC
Q 043707          122 KEGHIYSLAASGDLLYTGS-DSKNIRVWKNLKE--FS---GFKS-----------NSGLVKAIIITGDSNKIFTGH-QDG  183 (347)
Q Consensus       122 h~~~V~~l~~~~~~l~tg~-~dg~I~vwd~~~~--~~---~~~~-----------h~~~V~~l~~sp~~~~l~s~~-~Dg  183 (347)
                      +......+.+++++|++++ .++.|.+|+....  +.   ....           +...+.+++|+|++++|++++ .++
T Consensus        98 ~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  177 (361)
T 3scy_A           98 MGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTD  177 (361)
T ss_dssp             SSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTT
T ss_pred             CCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCC
Confidence            4445666667888766665 6889999985421  11   1111           123468899999999766655 588


Q ss_pred             cEEEEecCCCCC------ceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEe-CC
Q 043707          184 KIRIWKVSRKNP------SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGS-WD  256 (347)
Q Consensus       184 ~I~vwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~d  256 (347)
                      .|++|++.....      ......                         .......+...+..++|+|++++|++++ .+
T Consensus       178 ~v~v~~~~~~~~~~~~~~l~~~~~-------------------------~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~  232 (361)
T 3scy_A          178 QIHKFNINPNANADNKEKFLTKGT-------------------------PEAFKVAPGSGPRHLIFNSDGKFAYLINEIG  232 (361)
T ss_dssp             EEEEEEECTTCCTTTCCCCEEEEE-------------------------EEEEECCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred             EEEEEEEcCCCCcccccceeeccc-------------------------ccceecCCCCCCeEEEEcCCCCEEEEEcCCC
Confidence            999999886542      110000                         0001112455678899999999888777 58


Q ss_pred             CcEEEEeCCCCEE--EEEEe---cCCCcEEEEEeCCCC-EEEEEeC--CCcEEEEEcccCCccceeeehhhhhccCCcEE
Q 043707          257 KTLKVWRISDCKC--LESIN---AHDDAINSVVAGFDS-LVFTGSA--DGTVKVWRRELQGKGTKHFLAQVLLKQENAIT  328 (347)
Q Consensus       257 g~i~vwdl~~~~~--~~~~~---~h~~~v~~i~~~~~~-~l~s~~~--dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~  328 (347)
                      +.|.+||+.+++.  +..+.   .+......++|+||+ +|+++..  ++.|.+|++.....  .......+.. ...+.
T Consensus       233 ~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g--~~~~~~~~~~-g~~~~  309 (361)
T 3scy_A          233 GTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNG--TLTKVGYQLT-GIHPR  309 (361)
T ss_dssp             CEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTC--CEEEEEEEEC-SSCCC
T ss_pred             CeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCC--cEEEeeEecC-CCCCc
Confidence            9999999987754  33333   233457899999998 6655554  58999999963211  1112222222 45678


Q ss_pred             EEEEccCCCEEEEecCC
Q 043707          329 ALAVNQESAVVYCGSSD  345 (347)
Q Consensus       329 ~l~~~p~~~~l~sgs~D  345 (347)
                      +++|+|+|++|++++.+
T Consensus       310 ~~~~spdg~~l~~~~~~  326 (361)
T 3scy_A          310 NFIITPNGKYLLVACRD  326 (361)
T ss_dssp             EEEECTTSCEEEEEETT
T ss_pred             eEEECCCCCEEEEEECC
Confidence            99999999998888743

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.68  E-value=1.1e-14  Score=130.21  Aligned_cols=183  Identities=11%  Similarity=0.147  Sum_probs=133.1

Q ss_pred             EEEEe--ecCCEEEEec--CCCcEEEEeCCCc--ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceee
Q 043707          126 IYSLA--ASGDLLYTGS--DSKNIRVWKNLKE--FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHK  199 (347)
Q Consensus       126 V~~l~--~~~~~l~tg~--~dg~I~vwd~~~~--~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~  199 (347)
                      +.++.  ++++++++++  .++.|.+||....  ...+..+...+.+++|+|++++++++..++.|.+||+.+++.....
T Consensus       143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~  222 (353)
T 3vgz_A          143 PRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRK  222 (353)
T ss_dssp             EEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             CceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEE
Confidence            44444  4677666665  5789999996533  4444445566899999999999999999999999999887543222


Q ss_pred             eecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCCCEEEEEEecCCC
Q 043707          200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRISDCKCLESINAHDD  278 (347)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~vwdl~~~~~~~~~~~h~~  278 (347)
                      ....                            .++...+..++|+|+++.|++++. ++.|.+||+.+++.+..+.....
T Consensus       223 ~~~~----------------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~  274 (353)
T 3vgz_A          223 KLLD----------------------------DGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES  274 (353)
T ss_dssp             ECCC----------------------------SSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC
T ss_pred             EcCC----------------------------CCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC
Confidence            2110                            024556788999999997777765 49999999999999888875443


Q ss_pred             cEEEEEeCCCC-EEE-EEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707          279 AINSVVAGFDS-LVF-TGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       279 ~v~~i~~~~~~-~l~-s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                        ..++|+|++ +++ +...++.|.+||+....      ....+. ....+.+++|+|++++|+.+..+
T Consensus       275 --~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~------~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          275 --LAVLFNPARNEAYVTHRQAGKVSVIDAKSYK------VVKTFD-TPTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             --CCEEEETTTTEEEEEETTTTEEEEEETTTTE------EEEEEE-CCSEEEEEEECTTSCEEEEEEEC
T ss_pred             --ceEEECCCCCEEEEEECCCCeEEEEECCCCe------EEEEEe-cCCCCCeEEEcCCCCEEEEEEcc
Confidence              568999997 444 55579999999997543      222222 23478999999999987777655

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.67  E-value=1.4e-15  Score=150.10  Aligned_cols=177  Identities=7%  Similarity=0.012  Sum_probs=129.9

Q ss_pred             EEeecCCEEEEecC-CC-----cEEEEeCCCc--ceeeecCCC------------------------CeeEEEEeCCCCE
Q 043707          128 SLAASGDLLYTGSD-SK-----NIRVWKNLKE--FSGFKSNSG------------------------LVKAIIITGDSNK  175 (347)
Q Consensus       128 ~l~~~~~~l~tg~~-dg-----~I~vwd~~~~--~~~~~~h~~------------------------~V~~l~~sp~~~~  175 (347)
                      +++++|++|++++. |+     .|++||....  ...+..+..                        .|.+++|+|||++
T Consensus        43 ~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~  122 (741)
T 2ecf_A           43 KVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQR  122 (741)
T ss_dssp             EECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSE
T ss_pred             eEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCE
Confidence            44557889999988 88     8999996532  233333322                        3789999999999


Q ss_pred             EEEEeCCCcEEEEecCCC---CCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEE
Q 043707          176 IFTGHQDGKIRIWKVSRK---NPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYS  252 (347)
Q Consensus       176 l~s~~~Dg~I~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s  252 (347)
                      |++++. +.|++||+.++   .....                                 ..|...+.+++|+|||++|+.
T Consensus       123 l~~~~~-~~i~~~d~~~~~~~~~~~l---------------------------------~~~~~~~~~~~~SPDG~~la~  168 (741)
T 2ecf_A          123 LLFPLG-GELYLYDLKQEGKAAVRQL---------------------------------THGEGFATDAKLSPKGGFVSF  168 (741)
T ss_dssp             EEEEET-TEEEEEESSSCSTTSCCBC---------------------------------CCSSSCEEEEEECTTSSEEEE
T ss_pred             EEEEeC-CcEEEEECCCCCcceEEEc---------------------------------ccCCcccccccCCCCCCEEEE
Confidence            999986 89999999887   32111                                 126678999999999999999


Q ss_pred             EeCCCcEEEEeCCCCEEEEEEecCCCc----------------EEEEEeCCCC-EEEEEeCCC-----------------
Q 043707          253 GSWDKTLKVWRISDCKCLESINAHDDA----------------INSVVAGFDS-LVFTGSADG-----------------  298 (347)
Q Consensus       253 ~s~dg~i~vwdl~~~~~~~~~~~h~~~----------------v~~i~~~~~~-~l~s~~~dg-----------------  298 (347)
                      ++ ++.|++||+.+++.......+...                +..+.|+||+ +|++++.|+                 
T Consensus       169 ~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~  247 (741)
T 2ecf_A          169 IR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTD  247 (741)
T ss_dssp             EE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEE
T ss_pred             Ee-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCccc
Confidence            88 569999999998876555444332                4779999998 677776655                 


Q ss_pred             ----------------cEEEEEccc-CCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707          299 ----------------TVKVWRREL-QGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       299 ----------------~I~vwd~~~-~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                                      .|++||+.. +..  .  .+.....|...+..++| |||++|+.++.
T Consensus       248 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~~--~--~~~~~~~~~~~~~~~~~-pDg~~l~~~~~  305 (741)
T 2ecf_A          248 VIEQRYPAAGDANVQVKLGVISPAEQAQT--Q--WIDLGKEQDIYLARVNW-RDPQHLSFQRQ  305 (741)
T ss_dssp             EEEEECCBTTSCCCEEEEEEECSSTTCCC--E--EECCCSCSSEEEEEEEE-EETTEEEEEEE
T ss_pred             ceEeecCCCCCCCCeeEEEEEECCCCCce--E--EecCCCCcceEEEEEEe-CCCCEEEEEEe
Confidence                            788888874 321  1  11111247778999999 99999987654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.67  E-value=1.2e-15  Score=146.59  Aligned_cols=213  Identities=9%  Similarity=-0.013  Sum_probs=143.0

Q ss_pred             cccEEEEe--ecCCEEEEecC-CCcEEEEeCC-CcceeeecCC-CCeeEEEEeCCCCEEEEEeC---CCcEEEEecCC--
Q 043707          123 EGHIYSLA--ASGDLLYTGSD-SKNIRVWKNL-KEFSGFKSNS-GLVKAIIITGDSNKIFTGHQ---DGKIRIWKVSR--  192 (347)
Q Consensus       123 ~~~V~~l~--~~~~~l~tg~~-dg~I~vwd~~-~~~~~~~~h~-~~V~~l~~sp~~~~l~s~~~---Dg~I~vwd~~~--  192 (347)
                      ..+|+++.  ++|++||.++. ||+++||++. .....+..|. ..+..++|+|+ +.++++..   +...++|.++.  
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~   99 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR   99 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence            34577765  67999998877 9999999853 2234445555 58999999999 77777775   55667766654  


Q ss_pred             CCCceee-------eecccccccc-eEE-eccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCC----CcE
Q 043707          193 KNPSVHK-------RVGSLPTFKD-YVK-SSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWD----KTL  259 (347)
Q Consensus       193 ~~~~~~~-------~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d----g~i  259 (347)
                      .......       .....+.... .+. ...+...++++..........+..  ..++|+|||++|+.++.|    +.|
T Consensus       100 ~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i  177 (582)
T 3o4h_A          100 PGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSL  177 (582)
T ss_dssp             TTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEE
T ss_pred             CCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEE
Confidence            2111110       0011112211 111 122222333443333333333433  789999999999988877    789


Q ss_pred             EEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCC--cEEEEEcccCCccceeeehhhhhccCCcEEEEE-----
Q 043707          260 KVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADG--TVKVWRRELQGKGTKHFLAQVLLKQENAITALA-----  331 (347)
Q Consensus       260 ~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg--~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~-----  331 (347)
                      ++||+.+++.. .+..|...+..++|+||| .|+++..++  .|++||+..+..      . .+..|...+..++     
T Consensus       178 ~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~------~-~~~~~~~~~~~~~~~~~~  249 (582)
T 3o4h_A          178 FTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSV------E-DLELPSKDFSSYRPTAIT  249 (582)
T ss_dssp             EEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCE------E-ECCCSCSHHHHHCCSEEE
T ss_pred             EEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcE------E-EccCCCcChhhhhhcccc
Confidence            99999887754 677888889999999998 777788888  899999975432      2 4455666666666     


Q ss_pred             ---EccCCCEEEEecCCC
Q 043707          332 ---VNQESAVVYCGSSDG  346 (347)
Q Consensus       332 ---~~p~~~~l~sgs~DG  346 (347)
                         |+|||.++++++.||
T Consensus       250 ~~~~spdg~~~~~~~~~g  267 (582)
T 3o4h_A          250 WLGYLPDGRLAVVARREG  267 (582)
T ss_dssp             EEEECTTSCEEEEEEETT
T ss_pred             ceeEcCCCcEEEEEEcCC
Confidence               999998888888876

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.67  E-value=2e-14  Score=127.59  Aligned_cols=175  Identities=7%  Similarity=0.101  Sum_probs=125.1

Q ss_pred             CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeC-CCcEEEEecCCCCC-ceeeeeccccccc
Q 043707          133 GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQ-DGKIRIWKVSRKNP-SVHKRVGSLPTFK  208 (347)
Q Consensus       133 ~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~-Dg~I~vwd~~~~~~-~~~~~~~~~~~~~  208 (347)
                      +.+++++..++.|++||..  +....+..+...+ +++|+|+++++++++. ++.|.+||+.+++. .....        
T Consensus        10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--------   80 (331)
T 3u4y_A           10 NFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ--------   80 (331)
T ss_dssp             CEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE--------
T ss_pred             CEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc--------
Confidence            3368888999999999954  3344555555667 9999999997776665 89999999988764 11111        


Q ss_pred             ceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCC---cEEEEeCCCCEEEEEEecCCCcEEEEEe
Q 043707          209 DYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDK---TLKVWRISDCKCLESINAHDDAINSVVA  285 (347)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg---~i~vwdl~~~~~~~~~~~h~~~v~~i~~  285 (347)
                                              .+.....+++|+|++++|+++..++   .|.+||+.+++.+..+..+. ....++|
T Consensus        81 ------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~  135 (331)
T 3u4y_A           81 ------------------------EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAI  135 (331)
T ss_dssp             ------------------------ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEE
T ss_pred             ------------------------cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEE
Confidence                                    2444444599999999999655553   89999999999988887544 4689999


Q ss_pred             CCCC--EEEEEeCCCc-EEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          286 GFDS--LVFTGSADGT-VKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       286 ~~~~--~l~s~~~dg~-I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                      +|++  ++++...++. |.+|++...+......  .........+..++|+|+|++|+.++
T Consensus       136 spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~spdg~~l~v~~  194 (331)
T 3u4y_A          136 SPNGNGLILIDRSSANTVRRFKIDADGVLFDTG--QEFISGGTRPFNITFTPDGNFAFVAN  194 (331)
T ss_dssp             CTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE--EEEECSSSSEEEEEECTTSSEEEEEE
T ss_pred             CCCCCEEEEEecCCCceEEEEEECCCCcEeecC--CccccCCCCccceEECCCCCEEEEEe
Confidence            9998  4445566688 9999997443211111  11123345689999999999766554

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.66  E-value=2e-15  Score=148.39  Aligned_cols=187  Identities=6%  Similarity=-0.069  Sum_probs=125.8

Q ss_pred             EEE--EeecCCEEEEecCC---------CcEEEEeCCCc-ceee---ecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEec
Q 043707          126 IYS--LAASGDLLYTGSDS---------KNIRVWKNLKE-FSGF---KSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKV  190 (347)
Q Consensus       126 V~~--l~~~~~~l~tg~~d---------g~I~vwd~~~~-~~~~---~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~  190 (347)
                      |.+  ++++|++|++++.+         +.|++||.... ...+   ..|...+..++|+|||++|+.++. +.|++||+
T Consensus        63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~  141 (723)
T 1xfd_A           63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAH  141 (723)
T ss_dssp             CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESS
T ss_pred             cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEEC
Confidence            555  45678899998764         78889996533 2223   344556899999999999999886 79999999


Q ss_pred             CCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeec---------CCCeeEEEEcCCCCEEEEEeCCC----
Q 043707          191 SRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRH---------YDAVSCLSLNAEQGLLYSGSWDK----  257 (347)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---------~~~V~~l~~~~~~~~l~s~s~dg----  257 (347)
                      .+++...........                       ....++         ...+.+++|+|||+.|+.++.|+    
T Consensus       142 ~~g~~~~~~~~~~~~-----------------------~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~  198 (723)
T 1xfd_A          142 VGKQAIRVVSTGKEG-----------------------VIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVP  198 (723)
T ss_dssp             SSSCCEEEECCCBTT-----------------------TEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSC
T ss_pred             CCCceEEEecCCCCC-----------------------ceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccc
Confidence            887643221110000                       000011         12347899999999998887553    


Q ss_pred             ------------------------------cEEEEeCCCCEEEEEEecC------CCcEEEEEeCCCC-EEEEEe----C
Q 043707          258 ------------------------------TLKVWRISDCKCLESINAH------DDAINSVVAGFDS-LVFTGS----A  296 (347)
Q Consensus       258 ------------------------------~i~vwdl~~~~~~~~~~~h------~~~v~~i~~~~~~-~l~s~~----~  296 (347)
                                                    .|++||+.+++....+..+      ...+..+.|+||+ +|++..    .
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~  278 (723)
T 1xfd_A          199 IMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQN  278 (723)
T ss_dssp             EEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSC
T ss_pred             eEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCC
Confidence                                          7999999988866666654      6678999999999 554443    3


Q ss_pred             CCcEEEEEcccCCccceeeehhhhh-ccCCcE----EEEEEccCCCEEEEe
Q 043707          297 DGTVKVWRRELQGKGTKHFLAQVLL-KQENAI----TALAVNQESAVVYCG  342 (347)
Q Consensus       297 dg~I~vwd~~~~~~~~~~~~~~~~~-~h~~~V----~~l~~~p~~~~l~sg  342 (347)
                      +..|++||+..+..      ...+. .+...+    ..++|+|||+.|+..
T Consensus       279 ~~~i~~~d~~~g~~------~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  323 (723)
T 1xfd_A          279 VSILTLCDATTGVC------TKKHEDESEAWLHRQNEEPVFSKDGRKFFFI  323 (723)
T ss_dssp             EEEEEEEETTTCCE------EEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred             eEEEEEEeCCCCcc------eEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence            36899999875432      22222 233333    378999999877754

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.66  E-value=2e-14  Score=128.62  Aligned_cols=194  Identities=11%  Similarity=0.135  Sum_probs=128.9

Q ss_pred             eeccccEE--EEeecCCEEEEec-CCCcEEEEeCCC--c---ceeeec---------CCCCeeEEEEeCCCCEEEEEeCC
Q 043707          120 VRKEGHIY--SLAASGDLLYTGS-DSKNIRVWKNLK--E---FSGFKS---------NSGLVKAIIITGDSNKIFTGHQD  182 (347)
Q Consensus       120 ~~h~~~V~--~l~~~~~~l~tg~-~dg~I~vwd~~~--~---~~~~~~---------h~~~V~~l~~sp~~~~l~s~~~D  182 (347)
                      ..+...+.  ++.++|++|++++ .++.|.+|+...  .   +..+..         +...+.+++|+|+++.+++...+
T Consensus        82 ~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~  161 (347)
T 3hfq_A           82 VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGS  161 (347)
T ss_dssp             EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTT
T ss_pred             ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCC
Confidence            33444443  4456788777776 789999999641  1   122211         12348899999999966666778


Q ss_pred             CcEEEEecC-CCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEE-EeCCCcEE
Q 043707          183 GKIRIWKVS-RKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYS-GSWDKTLK  260 (347)
Q Consensus       183 g~I~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~dg~i~  260 (347)
                      +.|++|++. +++.......                             .......+..++|+|++++|++ +..++.|.
T Consensus       162 ~~v~~~~~~~~g~~~~~~~~-----------------------------~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~  212 (347)
T 3hfq_A          162 DKVYVYNVSDAGQLSEQSVL-----------------------------TMEAGFGPRHLVFSPDGQYAFLAGELSSQIA  212 (347)
T ss_dssp             TEEEEEEECTTSCEEEEEEE-----------------------------ECCTTCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             CEEEEEEECCCCcEEEeeeE-----------------------------EcCCCCCCceEEECCCCCEEEEEeCCCCEEE
Confidence            899999998 3321111100                             0012335678999999996666 45688999


Q ss_pred             EEeCCC--CEE--EEEEecCC------CcEEEEEeCCCC-EE-EEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEE
Q 043707          261 VWRISD--CKC--LESINAHD------DAINSVVAGFDS-LV-FTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAIT  328 (347)
Q Consensus       261 vwdl~~--~~~--~~~~~~h~------~~v~~i~~~~~~-~l-~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~  328 (347)
                      +|++..  ++.  +..+....      ..+..++|+|++ +| ++...++.|.+|++...+   .......+..+...+.
T Consensus       213 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g---~~~~~~~~~~~~~~~~  289 (347)
T 3hfq_A          213 SLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG---HLTLIQQISTEGDFPR  289 (347)
T ss_dssp             EEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG---CEEEEEEEECSSSCCC
T ss_pred             EEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC---cEEEeEEEecCCCCcC
Confidence            999874  543  33343332      458899999998 45 556679999999996332   1223444455566789


Q ss_pred             EEEEccCCCEEEEecCC
Q 043707          329 ALAVNQESAVVYCGSSD  345 (347)
Q Consensus       329 ~l~~~p~~~~l~sgs~D  345 (347)
                      .++|+|+|++|++++.+
T Consensus       290 ~~~~spdg~~l~v~~~~  306 (347)
T 3hfq_A          290 DFDLDPTEAFVVVVNQN  306 (347)
T ss_dssp             EEEECTTSSEEEEEETT
T ss_pred             eEEECCCCCEEEEEEcC
Confidence            99999999998888765

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.64  E-value=3.4e-14  Score=126.96  Aligned_cols=196  Identities=7%  Similarity=0.022  Sum_probs=134.7

Q ss_pred             ccEEEE--eecCCEEEEecC-------CCcEEEEeCCC--cceeeecCCCCeeEEEEeCCCCEEEE-EeCCCcEEEEecC
Q 043707          124 GHIYSL--AASGDLLYTGSD-------SKNIRVWKNLK--EFSGFKSNSGLVKAIIITGDSNKIFT-GHQDGKIRIWKVS  191 (347)
Q Consensus       124 ~~V~~l--~~~~~~l~tg~~-------dg~I~vwd~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s-~~~Dg~I~vwd~~  191 (347)
                      ..+..+  .++++++++++.       ++.|.+||...  ....+.. ...+..++|+|++++++. ...++.|.+||..
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~  119 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAK  119 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence            344444  456777777764       56899999653  3334433 345789999999986554 4567999999998


Q ss_pred             CCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEe--CCCcEEEEeCCCCEE
Q 043707          192 RKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGS--WDKTLKVWRISDCKC  269 (347)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s--~dg~i~vwdl~~~~~  269 (347)
                      +++.............                       .......+.+++|+|+++++++++  .++.|.+||+.+++.
T Consensus       120 ~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~  176 (353)
T 3vgz_A          120 TGEVKGRLVLDDRKRT-----------------------EEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL  176 (353)
T ss_dssp             TCCEEEEEESCCCCCC-----------------------SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEE
T ss_pred             CCeeEEEEecCCCccc-----------------------cccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCce
Confidence            8764333222100000                       000112368899999999888776  478899999999999


Q ss_pred             EEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707          270 LESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       270 ~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                      +..+..+...+..++|+|++ ++++++.++.|.+||+.....  .........++...+..++|+|++++|++++.+
T Consensus       177 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  251 (353)
T 3vgz_A          177 KTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKI--LSRKKLLDDGKEHFFINISLDTARQRAFITDSK  251 (353)
T ss_dssp             EEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEE--EEEEECCCSSSCCCEEEEEEETTTTEEEEEESS
T ss_pred             EEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeE--EEEEEcCCCCCCcccceEEECCCCCEEEEEeCC
Confidence            98888666668899999997 788888999999999975432  111111112345578899999999988777654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.63  E-value=3.5e-14  Score=125.78  Aligned_cols=202  Identities=10%  Similarity=0.060  Sum_probs=127.6

Q ss_pred             CEEEEecCCCcEEEEeCCC--cceeeecCCC--CeeEEEEeCCCCEE-EEEeCCCcEEEEecCCCCCceeeeecc-----
Q 043707          134 DLLYTGSDSKNIRVWKNLK--EFSGFKSNSG--LVKAIIITGDSNKI-FTGHQDGKIRIWKVSRKNPSVHKRVGS-----  203 (347)
Q Consensus       134 ~~l~tg~~dg~I~vwd~~~--~~~~~~~h~~--~V~~l~~sp~~~~l-~s~~~Dg~I~vwd~~~~~~~~~~~~~~-----  203 (347)
                      ++|++++.++.|++||...  ....+.....  .+..++|+|+++++ +++..++.|.+||+.+++.........     
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            4788999999999999653  2333332221  57889999998765 455567899999998876543332211     


Q ss_pred             --------cccccceEEecc-----------CCCeEE--EEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 043707          204 --------LPTFKDYVKSSV-----------NPKNYV--EVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVW  262 (347)
Q Consensus       204 --------~~~~~~~~~~~~-----------~~~~~~--~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vw  262 (347)
                              .+....++....           ....+.  +.........+.....+.+++|+|++++|+++  ++.|.+|
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~  159 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVM  159 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEE
Confidence                    111112222210           011111  11111222233345567889999999988887  6889999


Q ss_pred             eCCCCEEEEEEecCC-----------------------------------------------------------------
Q 043707          263 RISDCKCLESINAHD-----------------------------------------------------------------  277 (347)
Q Consensus       263 dl~~~~~~~~~~~h~-----------------------------------------------------------------  277 (347)
                      |+.+++.+..+..+.                                                                 
T Consensus       160 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~  239 (337)
T 1pby_B          160 DPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM  239 (337)
T ss_dssp             ETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC
T ss_pred             ECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCC
Confidence            998888766554322                                                                 


Q ss_pred             -CcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          278 -DAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       278 -~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                       ..+..++|+|++ +++++  ++.|++||+.....      ...+. ....+.+++|+|++++|++++.|+
T Consensus       240 ~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~------~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~  301 (337)
T 1pby_B          240 DVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNAS------IKRVP-LPHSYYSVNVSTDGSTVWLGGALG  301 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEE------EEEEE-CSSCCCEEEECTTSCEEEEESBSS
T ss_pred             CCceeeEEECCCCCEEEEe--CCeEEEEECCCCcC------cceec-CCCceeeEEECCCCCEEEEEcCCC
Confidence             124468899998 66666  79999999975432      22222 234678999999999999887765

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.63  E-value=5.3e-15  Score=145.09  Aligned_cols=193  Identities=10%  Similarity=0.169  Sum_probs=131.1

Q ss_pred             EeeeeccccEEE--EeecCCEEEEecCCCcEEEEeCCC-------cceeeecCCCC--------------eeEEEEeCCC
Q 043707          117 GSIVRKEGHIYS--LAASGDLLYTGSDSKNIRVWKNLK-------EFSGFKSNSGL--------------VKAIIITGDS  173 (347)
Q Consensus       117 ~~l~~h~~~V~~--l~~~~~~l~tg~~dg~I~vwd~~~-------~~~~~~~h~~~--------------V~~l~~sp~~  173 (347)
                      ..+..+.+.+.+  ++++|++|+.+ .++.|++|+...       .......+...              +.+++|+|||
T Consensus       114 ~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg  192 (706)
T 2z3z_A          114 TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG  192 (706)
T ss_dssp             EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS
T ss_pred             EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCC
Confidence            334445444543  44578888885 579999999654       22222233332              5899999999


Q ss_pred             CEEEEEe---------------------------------CCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeE
Q 043707          174 NKIFTGH---------------------------------QDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNY  220 (347)
Q Consensus       174 ~~l~s~~---------------------------------~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (347)
                      ++|++++                                 .+..|++||+.+++......                    
T Consensus       193 ~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~--------------------  252 (706)
T 2z3z_A          193 SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT--------------------  252 (706)
T ss_dssp             SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC--------------------
T ss_pred             CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc--------------------
Confidence            9999987                                 33567777776553211100                    


Q ss_pred             EEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCEEEEEEe--cCCC---cEEEEEeCC--C
Q 043707          221 VEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDK-----TLKVWRISDCKCLESIN--AHDD---AINSVVAGF--D  288 (347)
Q Consensus       221 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg-----~i~vwdl~~~~~~~~~~--~h~~---~v~~i~~~~--~  288 (347)
                                ...|...+.+++|+|+++.|++++.++     .|++||+.+++....+.  .+..   .+..+.|+|  +
T Consensus       253 ----------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~d  322 (706)
T 2z3z_A          253 ----------GEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSN  322 (706)
T ss_dssp             ----------CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCS
T ss_pred             ----------CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCC
Confidence                      002667799999999999999987776     89999999984333332  2222   246789999  8


Q ss_pred             C-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEE-EEEccCCCEEEEecCC
Q 043707          289 S-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITA-LAVNQESAVVYCGSSD  345 (347)
Q Consensus       289 ~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~-l~~~p~~~~l~sgs~D  345 (347)
                      + +++++..|+.++||++...+.     ....+..+...+.. ++|+|+++.|+.++.+
T Consensus       323 g~~l~~~~~~g~~~l~~~~~~~~-----~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~  376 (706)
T 2z3z_A          323 NQFIWQSRRDGWNHLYLYDTTGR-----LIRQVTKGEWEVTNFAGFDPKGTRLYFESTE  376 (706)
T ss_dssp             SEEEEEECTTSSCEEEEEETTSC-----EEEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred             CEEEEEEccCCccEEEEEECCCC-----EEEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence            8 777888999999998873332     34455567777877 8999999887765544

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.63  E-value=1.4e-14  Score=142.82  Aligned_cols=207  Identities=9%  Similarity=0.056  Sum_probs=141.5

Q ss_pred             EEeecCCEEEEecCCCcEEEEeCCC----cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeee---
Q 043707          128 SLAASGDLLYTGSDSKNIRVWKNLK----EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKR---  200 (347)
Q Consensus       128 ~l~~~~~~l~tg~~dg~I~vwd~~~----~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~---  200 (347)
                      +++++|++|++++. +.|++||...    ....+..|...+.+++|+|||++|+.++ ++.|++||+.+++......   
T Consensus       115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~  192 (741)
T 2ecf_A          115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGS  192 (741)
T ss_dssp             EECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCC
T ss_pred             EECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCc
Confidence            45567889998886 8999999653    4566777888999999999999999887 5699999998764322111   


Q ss_pred             ---------------------ecccccccceEEeccCCC-------------------------------eEEEEee---
Q 043707          201 ---------------------VGSLPTFKDYVKSSVNPK-------------------------------NYVEVRR---  225 (347)
Q Consensus       201 ---------------------~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~---  225 (347)
                                           +...|....++....+..                               ..+.+..   
T Consensus       193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~  272 (741)
T 2ecf_A          193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE  272 (741)
T ss_dssp             SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred             cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence                                 112233333333322210                               0111111   


Q ss_pred             -cceeeee---ecCCCeeEEEEcCCCCEEEEEeC-----CCcEEEEeCCCCEEEEEEecCCC----cEEEEEeCCCC-EE
Q 043707          226 -NRNVLKI---RHYDAVSCLSLNAEQGLLYSGSW-----DKTLKVWRISDCKCLESINAHDD----AINSVVAGFDS-LV  291 (347)
Q Consensus       226 -~~~~~~~---~h~~~V~~l~~~~~~~~l~s~s~-----dg~i~vwdl~~~~~~~~~~~h~~----~v~~i~~~~~~-~l  291 (347)
                       .......   .|...+..++| ||++.|+.++.     +..|++||+.++++...+..+..    .+..++|+||+ ++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~  351 (741)
T 2ecf_A          273 QAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSIL  351 (741)
T ss_dssp             TCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEE
T ss_pred             CCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEE
Confidence             1111111   36677899999 99999987754     56799999999988777765543    45688999998 77


Q ss_pred             EEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEE-EEccCCCEEEEec
Q 043707          292 FTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITAL-AVNQESAVVYCGS  343 (347)
Q Consensus       292 ~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l-~~~p~~~~l~sgs  343 (347)
                      ++++.||.++||.+...+.      ...+..|...|..+ .|+|+++.|+..+
T Consensus       352 ~~~~~~g~~~l~~~~~~~~------~~~l~~~~~~v~~~~~~s~dg~~l~~~~  398 (741)
T 2ecf_A          352 WSSERTGFQHLYRIDSKGK------AAALTHGNWSVDELLAVDEKAGLAYFRA  398 (741)
T ss_dssp             EEECTTSSCEEEEECSSSC------EEESCCSSSCEEEEEEEETTTTEEEEEE
T ss_pred             EEecCCCccEEEEEcCCCC------eeeeeecceEEEeEeEEeCCCCEEEEEE
Confidence            8888999999998764332      34455677788887 5999998775543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.62  E-value=9.1e-15  Score=149.72  Aligned_cols=219  Identities=10%  Similarity=0.034  Sum_probs=152.3

Q ss_pred             ceeEeeeeccccEEEEeecCC-EEEEecCCCcEEEEeC---CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707          114 GLIGSIVRKEGHIYSLAASGD-LLYTGSDSKNIRVWKN---LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK  189 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~~~~-~l~tg~~dg~I~vwd~---~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd  189 (347)
                      +....+.+|.+.+.++.|+++ ++++++.|+.+.||..   ......+..|. .+..++|+|+|++|+.+. ++.|++||
T Consensus       194 ~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d  271 (1045)
T 1k32_A          194 GAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFN  271 (1045)
T ss_dssp             TEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEEC
T ss_pred             CCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEec
Confidence            345566889999999999876 5567788899999963   23344555554 467789999999988884 89999999


Q ss_pred             cCCCCCceeee-------------------eccc-ccccceEEeccCCCeEEEE--eecceeeeeecCC-CeeEEEEcCC
Q 043707          190 VSRKNPSVHKR-------------------VGSL-PTFKDYVKSSVNPKNYVEV--RRNRNVLKIRHYD-AVSCLSLNAE  246 (347)
Q Consensus       190 ~~~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~-~V~~l~~~~~  246 (347)
                      +...... ...                   +... |....++... . ..+...  ..........|.. .+..++|+ +
T Consensus       272 ~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-d  347 (1045)
T 1k32_A          272 PDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-R-GQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-T  347 (1045)
T ss_dssp             TTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-T-TEEEEECTTSSBEEECSCCSCEEEEEECSS-S
T ss_pred             CCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-c-CEEEEEcCCCCceEEccCCCcceEEeeeEc-C
Confidence            8443221 100                   0011 2222222211 1 111111  1122222334666 78999999 9


Q ss_pred             CCEEEEEeCCCcEE-EEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccC
Q 043707          247 QGLLYSGSWDKTLK-VWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQE  324 (347)
Q Consensus       247 ~~~l~s~s~dg~i~-vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~  324 (347)
                      ++.|+.++.++.+. +||+..++.. .+..|...+..++|+||+ +|++++.++.|++||+..+.      ....+..|.
T Consensus       348 g~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~------~~~~~~~~~  420 (1045)
T 1k32_A          348 KVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK------PTVIERSRE  420 (1045)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC------EEEEEECSS
T ss_pred             CCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCc------eEEeccCCC
Confidence            99999999888888 9999877654 344788889999999998 88899999999999997543      233344688


Q ss_pred             CcEEEEEEccCCCEEEEecCC
Q 043707          325 NAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       325 ~~V~~l~~~p~~~~l~sgs~D  345 (347)
                      ..|.+++|+|||++|++++.+
T Consensus       421 ~~v~~~~~SpDG~~la~~~~~  441 (1045)
T 1k32_A          421 AMITDFTISDNSRFIAYGFPL  441 (1045)
T ss_dssp             SCCCCEEECTTSCEEEEEEEE
T ss_pred             CCccceEECCCCCeEEEEecC
Confidence            889999999999999988764

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.62  E-value=6.6e-15  Score=141.32  Aligned_cols=173  Identities=12%  Similarity=0.054  Sum_probs=131.7

Q ss_pred             EEEEeecCC-EEEEecCCCcEEEEeCCCc-ceeeecCCCCeeEEEEeCCCCEEEEEeCC----CcEEEEecCCCCCceee
Q 043707          126 IYSLAASGD-LLYTGSDSKNIRVWKNLKE-FSGFKSNSGLVKAIIITGDSNKIFTGHQD----GKIRIWKVSRKNPSVHK  199 (347)
Q Consensus       126 V~~l~~~~~-~l~tg~~dg~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s~~~D----g~I~vwd~~~~~~~~~~  199 (347)
                      +.+++++|+ .+++.+.++.+.+||.... ...+..+..  .+++|+|||++|++++.|    +.|++||+.+++.... 
T Consensus       114 ~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l-  190 (582)
T 3o4h_A          114 ILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF-  190 (582)
T ss_dssp             EEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEE-
T ss_pred             eeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEe-
Confidence            668888886 3344444455669985432 333333333  899999999999988877    7899999988764211 


Q ss_pred             eecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCC--cEEEEeCCCCEEEEEEecCC
Q 043707          200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDK--TLKVWRISDCKCLESINAHD  277 (347)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg--~i~vwdl~~~~~~~~~~~h~  277 (347)
                                                      ..|...+..++|+|||+.|+++..++  .|++||+.+++.. .+..|.
T Consensus       191 --------------------------------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~  237 (582)
T 3o4h_A          191 --------------------------------DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS  237 (582)
T ss_dssp             --------------------------------CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC
T ss_pred             --------------------------------ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC
Confidence                                            13777889999999999999888888  8999999998887 777787


Q ss_pred             CcEEEEE--------eCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          278 DAINSVV--------AGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       278 ~~v~~i~--------~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      ..+..+.        |+||+ ++++++.|+++++|++   ++     ...   .+...|.+++|+ +++++++++.+.
T Consensus       238 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~---g~-----~~~---~~~~~v~~~~~s-dg~~l~~~s~~~  303 (582)
T 3o4h_A          238 KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID---GE-----RVE---APQGNHGRVVLW-RGKLVTSHTSLS  303 (582)
T ss_dssp             SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET---TE-----EEC---CCSSEEEEEEEE-TTEEEEEEEETT
T ss_pred             cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE---CC-----eec---cCCCceEEEEec-CCEEEEEEcCCC
Confidence            7777777        99998 7788899999999998   22     111   234678999999 999998887764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.61  E-value=6.9e-14  Score=125.09  Aligned_cols=193  Identities=11%  Similarity=0.164  Sum_probs=122.4

Q ss_pred             EEEeecCCEEEEecC---CCcEEEEeCCC----cceeeecCCCCeeEEEEeCCCCEEEEEe-CCCcEEEEecCCC-CCce
Q 043707          127 YSLAASGDLLYTGSD---SKNIRVWKNLK----EFSGFKSNSGLVKAIIITGDSNKIFTGH-QDGKIRIWKVSRK-NPSV  197 (347)
Q Consensus       127 ~~l~~~~~~l~tg~~---dg~I~vwd~~~----~~~~~~~h~~~V~~l~~sp~~~~l~s~~-~Dg~I~vwd~~~~-~~~~  197 (347)
                      .++.++|+ |++++.   ++.|++|+...    .+..+..+...+..++|+|++++|++++ .++.|++|++... ....
T Consensus        45 ~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~  123 (347)
T 3hfq_A           45 LALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTL  123 (347)
T ss_dssp             EEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEE
T ss_pred             EEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeee
Confidence            34556777 554443   68999999632    2333445677899999999999888888 7899999999643 2111


Q ss_pred             eeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC-CCEEE--EEEe
Q 043707          198 HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS-DCKCL--ESIN  274 (347)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~-~~~~~--~~~~  274 (347)
                      .........                    ... ...+...+.+++|+|+++++++...++.|.+||+. +++..  ..+.
T Consensus       124 ~~~~~~~~~--------------------~p~-~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~  182 (347)
T 3hfq_A          124 TDTVQHSGH--------------------GPR-PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLT  182 (347)
T ss_dssp             EEEEECCCC--------------------CSS-TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEE
T ss_pred             cceeecCCC--------------------CCC-ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEE
Confidence            111100000                    000 00133458899999999966666678899999998 55432  2333


Q ss_pred             cC-CCcEEEEEeCCCC-EEE-EEeCCCcEEEEEcccCCccceeeehhhhhcc------CCcEEEEEEccCCCEEEEec
Q 043707          275 AH-DDAINSVVAGFDS-LVF-TGSADGTVKVWRRELQGKGTKHFLAQVLLKQ------ENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       275 ~h-~~~v~~i~~~~~~-~l~-s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h------~~~V~~l~~~p~~~~l~sgs  343 (347)
                      .+ ...+..++|+|++ +++ ++..++.|.+|++.....  .......+...      ...+..++|+|+|++|+++.
T Consensus       183 ~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~  258 (347)
T 3hfq_A          183 MEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTG--AFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSN  258 (347)
T ss_dssp             CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTT--EEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEE
T ss_pred             cCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCC--ceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEe
Confidence            33 3367889999998 444 456789999999874211  11111111111      24689999999999885543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.61  E-value=6.4e-14  Score=124.83  Aligned_cols=178  Identities=7%  Similarity=0.054  Sum_probs=122.2

Q ss_pred             EEEeecCCE-EEEecCCCcEEEEeCCCc--ceeeecC------CCCeeEEEEeCCCCEEEEEeCC------------CcE
Q 043707          127 YSLAASGDL-LYTGSDSKNIRVWKNLKE--FSGFKSN------SGLVKAIIITGDSNKIFTGHQD------------GKI  185 (347)
Q Consensus       127 ~~l~~~~~~-l~tg~~dg~I~vwd~~~~--~~~~~~h------~~~V~~l~~sp~~~~l~s~~~D------------g~I  185 (347)
                      .++.+++++ ++++..++.|++||....  ...+...      ...+.+++|+|++++|++++.+            +.|
T Consensus        48 ~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i  127 (349)
T 1jmx_B           48 AMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRL  127 (349)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEE
T ss_pred             eEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeE
Confidence            455567775 456667899999996533  3333322      2237899999999999999866            899


Q ss_pred             EEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 043707          186 RIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS  265 (347)
Q Consensus       186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~  265 (347)
                      .+||+.+++.......                              ..+...+.+++|+|+++ +++++  +.|.+||+.
T Consensus       128 ~~~d~~~~~~~~~~~~------------------------------~~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~  174 (349)
T 1jmx_B          128 EVFSTADGLEAKPVRT------------------------------FPMPRQVYLMRAADDGS-LYVAG--PDIYKMDVK  174 (349)
T ss_dssp             EEEEGGGGGGBCCSEE------------------------------EECCSSCCCEEECTTSC-EEEES--SSEEEECTT
T ss_pred             EEEECCCccccceeee------------------------------ccCCCcccceeECCCCc-EEEcc--CcEEEEeCC
Confidence            9999987542211110                              12444688899999999 66654  349999999


Q ss_pred             CCEEEEEEecCC--------------------------------------------------------------------
Q 043707          266 DCKCLESINAHD--------------------------------------------------------------------  277 (347)
Q Consensus       266 ~~~~~~~~~~h~--------------------------------------------------------------------  277 (347)
                      +++.+..+..+.                                                                    
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (349)
T 1jmx_B          175 TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLT  254 (349)
T ss_dssp             TCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECS
T ss_pred             CCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCC
Confidence            988877765332                                                                    


Q ss_pred             CcEEEEEeCC-CC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          278 DAINSVVAGF-DS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       278 ~~v~~i~~~~-~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      ..+..++++| ++ +++++  ++.|.+||+.....      ...+. ....+.+++|+|++++|++++.++
T Consensus       255 ~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~------~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~  316 (349)
T 1jmx_B          255 ELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKL------IKAAN-LDHTYYCVAFDKKGDKLYLGGTFN  316 (349)
T ss_dssp             SCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEE------EEEEE-CSSCCCEEEECSSSSCEEEESBSS
T ss_pred             CcceeeEecCCCCCEEEEE--cCeEEEEECccCeE------EEEEc-CCCCccceEECCCCCEEEEecCCC
Confidence            1344567778 87 66666  89999999975431      22222 233577999999999888877665

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.60  E-value=1.2e-14  Score=142.57  Aligned_cols=200  Identities=9%  Similarity=0.080  Sum_probs=133.9

Q ss_pred             ccEEEEeecC-CEEEEecCCCcEEEEeCCC-cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCC-----CCCc
Q 043707          124 GHIYSLAASG-DLLYTGSDSKNIRVWKNLK-EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSR-----KNPS  196 (347)
Q Consensus       124 ~~V~~l~~~~-~~l~tg~~dg~I~vwd~~~-~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~-----~~~~  196 (347)
                      ..|.+++++. +.++.+ .++.|++||... ....+..+...+.+++|+|+|++|+++ .|+.|++||+.+     ++..
T Consensus        82 ~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~  159 (706)
T 2z3z_A           82 FPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAI  159 (706)
T ss_dssp             CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCE
T ss_pred             cCceeEEECCCCeEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcE
Confidence            3477776643 444444 359999999754 344555677789999999999999985 689999999987     5432


Q ss_pred             eeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEe----------------------
Q 043707          197 VHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGS----------------------  254 (347)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------------------  254 (347)
                      ........    .+. ...            . ....+...+.+++|+||+++|++++                      
T Consensus       160 ~~~~~~~~----~~~-~g~------------~-~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~  221 (706)
T 2z3z_A          160 AVTIDGTE----TLV-YGQ------------A-VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESK  221 (706)
T ss_dssp             ESCSCCBT----TEE-ESS------------C-CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEE
T ss_pred             EeccCCCC----CeE-ccc------------c-hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceE
Confidence            21111000    000 000            0 0011234468899999999999987                      


Q ss_pred             -----------CCCcEEEEeCCCCEEEEEEe--cCCCcEEEEEeCCCC-EEEEEeCCC-----cEEEEEcccCCccceee
Q 043707          255 -----------WDKTLKVWRISDCKCLESIN--AHDDAINSVVAGFDS-LVFTGSADG-----TVKVWRRELQGKGTKHF  315 (347)
Q Consensus       255 -----------~dg~i~vwdl~~~~~~~~~~--~h~~~v~~i~~~~~~-~l~s~~~dg-----~I~vwd~~~~~~~~~~~  315 (347)
                                 .+..|++||+.+++......  .|...+..++|+||+ .|++++.++     .|++||+..+..  ...
T Consensus       222 ~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~--~~~  299 (706)
T 2z3z_A          222 PLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF--VRT  299 (706)
T ss_dssp             EECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE--EEE
T ss_pred             EeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce--eeE
Confidence                       45779999999988654442  467789999999998 677777665     999999975422  001


Q ss_pred             ehhhhhccC---CcEEEEEEcc--CCCEEEEecCCCC
Q 043707          316 LAQVLLKQE---NAITALAVNQ--ESAVVYCGSSDGL  347 (347)
Q Consensus       316 ~~~~~~~h~---~~V~~l~~~p--~~~~l~sgs~DG~  347 (347)
                      +..  ..+.   ..+..++|+|  +|++|++++.||+
T Consensus       300 ~~~--~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~  334 (706)
T 2z3z_A          300 LFV--ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGW  334 (706)
T ss_dssp             EEE--EECSSCCCCCSCCEECTTCSSEEEEEECTTSS
T ss_pred             EEE--ccCCCeECccCCceeecCCCCEEEEEEccCCc
Confidence            110  1122   1346789999  9999999988763

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.59  E-value=5.2e-15  Score=145.51  Aligned_cols=180  Identities=7%  Similarity=0.025  Sum_probs=123.5

Q ss_pred             EEeecCCEEEEecCCCcEEEEeCCC--cceeeecCCC---CeeEEEEeCCCCEEEEEeC---------CCcEEEEecCCC
Q 043707          128 SLAASGDLLYTGSDSKNIRVWKNLK--EFSGFKSNSG---LVKAIIITGDSNKIFTGHQ---------DGKIRIWKVSRK  193 (347)
Q Consensus       128 ~l~~~~~~l~tg~~dg~I~vwd~~~--~~~~~~~h~~---~V~~l~~sp~~~~l~s~~~---------Dg~I~vwd~~~~  193 (347)
                      ++.+++++++++ .|+.|++||...  ....+..|..   .|.+++|+|||++|++++.         |+.|++||+.++
T Consensus        22 ~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g  100 (719)
T 1z68_A           22 NWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG  100 (719)
T ss_dssp             EESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred             EECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC
Confidence            344556445544 589999999653  2333333332   3899999999999999876         789999999887


Q ss_pred             CCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEE
Q 043707          194 NPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI  273 (347)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~  273 (347)
                      +......                                 ....+..++|+|||+.|+.+. |+.|++||+.++++....
T Consensus       101 ~~~~~~~---------------------------------l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~  146 (719)
T 1z68_A          101 EFVRGNE---------------------------------LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQIT  146 (719)
T ss_dssp             EECCSSC---------------------------------CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECC
T ss_pred             cccccee---------------------------------cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEe
Confidence            5311011                                 124577899999999999886 789999999888765432


Q ss_pred             -ecCCCcE-----------------EEEEeCCCC-EEEEEeCCC----------------------------------cE
Q 043707          274 -NAHDDAI-----------------NSVVAGFDS-LVFTGSADG----------------------------------TV  300 (347)
Q Consensus       274 -~~h~~~v-----------------~~i~~~~~~-~l~s~~~dg----------------------------------~I  300 (347)
                       .++...|                 .++.|+||| .|+.++.|.                                  .|
T Consensus       147 ~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l  226 (719)
T 1z68_A          147 FNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRI  226 (719)
T ss_dssp             CCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEE
T ss_pred             cCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEE
Confidence             2222222                 489999998 777776542                                  78


Q ss_pred             EEEEcccCCcc--ceeeehhhhhccCCcEEEEEEccCCCEEEEe
Q 043707          301 KVWRRELQGKG--TKHFLAQVLLKQENAITALAVNQESAVVYCG  342 (347)
Q Consensus       301 ~vwd~~~~~~~--~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sg  342 (347)
                      ++||+......  ........+..|...+..++|+||++++++.
T Consensus       227 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~  270 (719)
T 1z68_A          227 FIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQW  270 (719)
T ss_dssp             EEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEE
T ss_pred             EEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEE
Confidence            89998743210  0111113456788899999999998777664

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.57  E-value=1.4e-12  Score=113.97  Aligned_cols=224  Identities=10%  Similarity=0.064  Sum_probs=149.2

Q ss_pred             cceeEeeeeccccEEEEee--cCC-EEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707          113 NGLIGSIVRKEGHIYSLAA--SGD-LLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK  189 (347)
Q Consensus       113 ~~~i~~l~~h~~~V~~l~~--~~~-~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd  189 (347)
                      ...+..+..+.....++.+  +++ +++++..++.|++|+.......+..+...+.+++++++++++++...++.|.+||
T Consensus        17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d   96 (296)
T 3e5z_A           17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQR   96 (296)
T ss_dssp             TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred             CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEc
Confidence            3344555555455555554  577 7888999999999997655666777778899999999998887777778999999


Q ss_pred             cCCCCCceeeee------------cccccccceEEe----cc-------------CCCeEEEEee-cceeeeeecCCCee
Q 043707          190 VSRKNPSVHKRV------------GSLPTFKDYVKS----SV-------------NPKNYVEVRR-NRNVLKIRHYDAVS  239 (347)
Q Consensus       190 ~~~~~~~~~~~~------------~~~~~~~~~~~~----~~-------------~~~~~~~~~~-~~~~~~~~h~~~V~  239 (347)
                      ..+++.......            ...+.. .++..    ..             ....++.+.. ........+.....
T Consensus        97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~  175 (296)
T 3e5z_A           97 EPGGEWESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPN  175 (296)
T ss_dssp             STTCCEEEEECEETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSEE
T ss_pred             CCCCcEEEEeeccCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecCCCCCc
Confidence            977753222110            011111 12221    00             0112333322 12222334566778


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCC-CCEE---EEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceee
Q 043707          240 CLSLNAEQGLLYSGSWDKTLKVWRIS-DCKC---LESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHF  315 (347)
Q Consensus       240 ~l~~~~~~~~l~s~s~dg~i~vwdl~-~~~~---~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~  315 (347)
                      .++|+|+++.|++.+.++.|.+||+. +++.   ...+..+...+..+++.++|.|.++. ++.|.+|+..  ++     
T Consensus       176 gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~--g~-----  247 (296)
T 3e5z_A          176 GLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD--GD-----  247 (296)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT--SC-----
T ss_pred             cEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC--CC-----
Confidence            99999999988777778999999986 4544   33343455567789999999665555 8899999986  22     


Q ss_pred             ehhhhhccCCcEEEEEE-ccCCCEEEEecCCC
Q 043707          316 LAQVLLKQENAITALAV-NQESAVVYCGSSDG  346 (347)
Q Consensus       316 ~~~~~~~h~~~V~~l~~-~p~~~~l~sgs~DG  346 (347)
                      ....+..+.. +++++| .|+++.|++++.+|
T Consensus       248 ~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~  278 (296)
T 3e5z_A          248 ELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE  278 (296)
T ss_dssp             EEEEEECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred             EEEEEECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence            3344445555 899999 58999999888765

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.54  E-value=3.8e-14  Score=139.32  Aligned_cols=190  Identities=10%  Similarity=0.029  Sum_probs=124.0

Q ss_pred             EEEeecCCEEEEecC---------CCcEEEEeCCCccee-eecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCc
Q 043707          127 YSLAASGDLLYTGSD---------SKNIRVWKNLKEFSG-FKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPS  196 (347)
Q Consensus       127 ~~l~~~~~~l~tg~~---------dg~I~vwd~~~~~~~-~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~  196 (347)
                      .+++++|++|+.++.         ++.|++||....... .......+..++|+|||+.|+.+. |+.|++||+.+++..
T Consensus        65 ~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~  143 (719)
T 1z68_A           65 YGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPF  143 (719)
T ss_dssp             EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCE
T ss_pred             EEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcE
Confidence            345567889988876         789999996543220 011135688999999999999886 789999999887642


Q ss_pred             eeeeecccccccceEEeccCCCeEEEEeecceeeeeecCC---------CeeEEEEcCCCCEEEEEeCCC----------
Q 043707          197 VHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYD---------AVSCLSLNAEQGLLYSGSWDK----------  257 (347)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---------~V~~l~~~~~~~~l~s~s~dg----------  257 (347)
                      .....+.                       ...+..++.+         ...+++|+|||+.|+.++.|.          
T Consensus       144 ~l~~~~~-----------------------~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~  200 (719)
T 1z68_A          144 QITFNGR-----------------------ENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSY  200 (719)
T ss_dssp             ECCCCCB-----------------------TTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEE
T ss_pred             EEecCCC-----------------------cCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeec
Confidence            2111000                       0001112322         235899999999999987652          


Q ss_pred             ------------------------cEEEEeCCCCEEE--------EEEecCCCcEEEEEeCCCCE-EEEEeC--C--CcE
Q 043707          258 ------------------------TLKVWRISDCKCL--------ESINAHDDAINSVVAGFDSL-VFTGSA--D--GTV  300 (347)
Q Consensus       258 ------------------------~i~vwdl~~~~~~--------~~~~~h~~~v~~i~~~~~~~-l~s~~~--d--g~I  300 (347)
                                              .|++||+.+++.+        ..+..|...+..++|+||+. +++...  +  ..|
T Consensus       201 ~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l  280 (719)
T 1z68_A          201 YGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVL  280 (719)
T ss_dssp             CCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEE
T ss_pred             cCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEE
Confidence                                    7889999887642        11335788899999999994 444322  2  247


Q ss_pred             EEEE----cccCCccceeeehhhh----hccCCcEE-----EEEEccCCCEEEE--ecCCC
Q 043707          301 KVWR----RELQGKGTKHFLAQVL----LKQENAIT-----ALAVNQESAVVYC--GSSDG  346 (347)
Q Consensus       301 ~vwd----~~~~~~~~~~~~~~~~----~~h~~~V~-----~l~~~p~~~~l~s--gs~DG  346 (347)
                      .+||    +..+.      ....+    ..|...|.     .++|+|||+.|+.  +..||
T Consensus       281 ~~~d~~~~~~~g~------~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g  335 (719)
T 1z68_A          281 SICDFREDWQTWD------CPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDG  335 (719)
T ss_dssp             EEEEECSSSSSEE------CCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTS
T ss_pred             EEEcccCCCCCCc------eEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCC
Confidence            8888    54321      23333    35666666     8899999986554  44444

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.52  E-value=5.4e-13  Score=120.46  Aligned_cols=189  Identities=10%  Similarity=0.096  Sum_probs=123.2

Q ss_pred             EEEeecCCEEEEecCCCcEEEEeCC-C-cceeeecC--CCCeeEEEEeCCCCE--EEEEe-------------CCCcEEE
Q 043707          127 YSLAASGDLLYTGSDSKNIRVWKNL-K-EFSGFKSN--SGLVKAIIITGDSNK--IFTGH-------------QDGKIRI  187 (347)
Q Consensus       127 ~~l~~~~~~l~tg~~dg~I~vwd~~-~-~~~~~~~h--~~~V~~l~~sp~~~~--l~s~~-------------~Dg~I~v  187 (347)
                      .++.+++++|++++.+ .|.+|+.. . .+.....+  .+.+.+++|+|+|++  ++++.             .+|.+++
T Consensus        45 ~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v  123 (365)
T 1jof_A           45 MTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNV  123 (365)
T ss_dssp             EEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEE
T ss_pred             EEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEE
Confidence            3456678889888887 99999853 2 22211111  134667899999984  55553             6899999


Q ss_pred             EecCC-CCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeCC
Q 043707          188 WKVSR-KNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRIS  265 (347)
Q Consensus       188 wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~vwdl~  265 (347)
                      |++.. ++.......                            ....+...+.+++|+|++++|+++.. ++.|++||+.
T Consensus       124 ~~~~~~g~~~~~~~~----------------------------~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~  175 (365)
T 1jof_A          124 FSVSETGKLEKNVQN----------------------------YEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKL  175 (365)
T ss_dssp             EEECTTCCEEEEEEE----------------------------EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EccCCCCcCcceEee----------------------------EEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEEC
Confidence            99974 331111000                            00024567899999999998888764 6799999998


Q ss_pred             -CCEEE--EEEe--cCCCcEEEEEeCCCC-EEEEEe-CCCcEEEEEcccCCccce--eeehhhhh----ccCC------c
Q 043707          266 -DCKCL--ESIN--AHDDAINSVVAGFDS-LVFTGS-ADGTVKVWRRELQGKGTK--HFLAQVLL----KQEN------A  326 (347)
Q Consensus       266 -~~~~~--~~~~--~h~~~v~~i~~~~~~-~l~s~~-~dg~I~vwd~~~~~~~~~--~~~~~~~~----~h~~------~  326 (347)
                       +++..  ..+.  .|...+..++|+|++ ++++++ .++.|.+|++........  ...+..+.    +|..      .
T Consensus       176 ~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~  255 (365)
T 1jof_A          176 ASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLY  255 (365)
T ss_dssp             TTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSE
T ss_pred             CCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccc
Confidence             67543  3444  245678999999998 666665 478999998763211000  01111221    2232      5


Q ss_pred             EEEEE-EccCCCEEEEecC
Q 043707          327 ITALA-VNQESAVVYCGSS  344 (347)
Q Consensus       327 V~~l~-~~p~~~~l~sgs~  344 (347)
                      +..++ |+|||++|+++..
T Consensus       256 ~~~i~~~spdG~~l~v~~~  274 (365)
T 1jof_A          256 RADVCALTFSGKYMFASSR  274 (365)
T ss_dssp             EEEEEEECTTSSEEEEEEE
T ss_pred             cccEEEECCCCCEEEEECC
Confidence            89999 9999999887653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.51  E-value=4.6e-13  Score=132.19  Aligned_cols=193  Identities=9%  Similarity=0.034  Sum_probs=125.2

Q ss_pred             EEEeecCCEEEEecCC---------CcEEEEeCCC-cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCc
Q 043707          127 YSLAASGDLLYTGSDS---------KNIRVWKNLK-EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPS  196 (347)
Q Consensus       127 ~~l~~~~~~l~tg~~d---------g~I~vwd~~~-~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~  196 (347)
                      ..++++|++|+.++.+         +.+++||... ....+..|.+.+...+|+|||+.|+.+. |+.|++|++.+++..
T Consensus        67 ~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~  145 (740)
T 4a5s_A           67 YSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSY  145 (740)
T ss_dssp             EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCE
T ss_pred             eEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceE
Confidence            5667889999998876         5667999664 3455667778899999999999999885 789999999887632


Q ss_pred             eeeeecccccccceEEeccCCCeEEEEeecceeeeeecC---------CCeeEEEEcCCCCEEEEEeCCC----------
Q 043707          197 VHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHY---------DAVSCLSLNAEQGLLYSGSWDK----------  257 (347)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~V~~l~~~~~~~~l~s~s~dg----------  257 (347)
                      .....+..                       .....++.         .....+.|+|||+.|+..+.|.          
T Consensus       146 ~lt~~g~~-----------------------~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~  202 (740)
T 4a5s_A          146 RITWTGKE-----------------------DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSF  202 (740)
T ss_dssp             ECCSCCBT-----------------------TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEE
T ss_pred             EEcCCCCc-----------------------cceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEe
Confidence            21111100                       00001122         2234578899988888765322          


Q ss_pred             --------------------------cEEEEeCCC---CE--EEEEEe------cCCCcEEEEEeCCCCE-EEEEe----
Q 043707          258 --------------------------TLKVWRISD---CK--CLESIN------AHDDAINSVVAGFDSL-VFTGS----  295 (347)
Q Consensus       258 --------------------------~i~vwdl~~---~~--~~~~~~------~h~~~v~~i~~~~~~~-l~s~~----  295 (347)
                                                +|++||+.+   ++  ....+.      .|...+..++|+||+. ++...    
T Consensus       203 ~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~  282 (740)
T 4a5s_A          203 YSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQ  282 (740)
T ss_dssp             CCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESST
T ss_pred             ecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCC
Confidence                                      588899988   73  223343      3778899999999993 44332    


Q ss_pred             CCCcEEEEEcccCCccceeeehhhh--hccCCcEE-----EEEEccCCCEEE-Eec
Q 043707          296 ADGTVKVWRRELQGKGTKHFLAQVL--LKQENAIT-----ALAVNQESAVVY-CGS  343 (347)
Q Consensus       296 ~dg~I~vwd~~~~~~~~~~~~~~~~--~~h~~~V~-----~l~~~p~~~~l~-sgs  343 (347)
                      .+..|++||+.++...........+  ..|...|.     .++|+|||+.|+ ..+
T Consensus       283 ~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s  338 (740)
T 4a5s_A          283 NYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIIS  338 (740)
T ss_dssp             TEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEE
T ss_pred             CEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEE
Confidence            2347999999865410001112222  34555544     789999999876 554

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.51  E-value=9.1e-13  Score=118.92  Aligned_cols=171  Identities=11%  Similarity=-0.009  Sum_probs=122.8

Q ss_pred             EEEeecCCEEEEecCCCcEEEEeCCCc------------ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 043707          127 YSLAASGDLLYTGSDSKNIRVWKNLKE------------FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKN  194 (347)
Q Consensus       127 ~~l~~~~~~l~tg~~dg~I~vwd~~~~------------~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~  194 (347)
                      .++.....++++|+.++ +++|+....            ......+.. |..|+|  ++++|+++ .++.|++||+.+..
T Consensus        43 Lais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~  117 (388)
T 1xip_A           43 LDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELS  117 (388)
T ss_dssp             EEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTT
T ss_pred             EEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhh
Confidence            36666788999999885 666973211            112234566 999999  88899999 88999999998765


Q ss_pred             CceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEe
Q 043707          195 PSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN  274 (347)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~  274 (347)
                      ......                                .|...+..+.+.+.  .++++..||.|.+||+.+++...   
T Consensus       118 ~~~~~~--------------------------------~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~---  160 (388)
T 1xip_A          118 EFRTVT--------------------------------SFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ---  160 (388)
T ss_dssp             CEEEEE--------------------------------ECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE---
T ss_pred             ccCccc--------------------------------eeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc---
Confidence            322111                                25556667666554  38888999999999999887643   


Q ss_pred             cCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCc--cceeeehhhhh---ccCCcEEEEEEccCCCEEEE
Q 043707          275 AHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGK--GTKHFLAQVLL---KQENAITALAVNQESAVVYC  341 (347)
Q Consensus       275 ~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~--~~~~~~~~~~~---~h~~~V~~l~~~p~~~~l~s  341 (347)
                       +...|+|++|+|+| ++.|..||.|++|+......  .........+.   +|...|.+|.|.+++.+|++
T Consensus       161 -~~~~Vs~v~WSpkG-~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          161 -LAQNVTSFDVTNSQ-LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             -EEESEEEEEECSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             -ccCCceEEEEcCCc-eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence             34579999999999 67899999999998875441  00111112223   47789999999999988876

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.51  E-value=3.7e-12  Score=114.52  Aligned_cols=174  Identities=8%  Similarity=0.121  Sum_probs=115.2

Q ss_pred             EEeecCCEEE-EecCCCcEEEEeCCCc--------c-------eeeecCCCCeeEEEEeCCCCEEEEEe-CCCcEEEEec
Q 043707          128 SLAASGDLLY-TGSDSKNIRVWKNLKE--------F-------SGFKSNSGLVKAIIITGDSNKIFTGH-QDGKIRIWKV  190 (347)
Q Consensus       128 ~l~~~~~~l~-tg~~dg~I~vwd~~~~--------~-------~~~~~h~~~V~~l~~sp~~~~l~s~~-~Dg~I~vwd~  190 (347)
                      ++.++|++|+ ++..++.|++|+....        +       .....+...+..++|+|+++++++++ .++.|.+||+
T Consensus       161 ~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~  240 (361)
T 3scy_A          161 RITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRY  240 (361)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEE
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEe
Confidence            4455787554 4555889999974421        1       11123345678999999999887777 6899999999


Q ss_pred             CCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCC--CcEEEEeCC--C
Q 043707          191 SRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWD--KTLKVWRIS--D  266 (347)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d--g~i~vwdl~--~  266 (347)
                      .+++......+...+                           .+...+..++|+|++++|+++..+  +.|.+|++.  +
T Consensus       241 ~~g~~~~~~~~~~~~---------------------------~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~  293 (361)
T 3scy_A          241 ADGMLDEIQTVAADT---------------------------VNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETN  293 (361)
T ss_dssp             ETTEEEEEEEEESCS---------------------------SCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTT
T ss_pred             cCCceEEeEEEecCC---------------------------CCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCC
Confidence            865422221111111                           134556899999999998777665  899999995  3


Q ss_pred             CE--EEEEEecCCCcEEEEEeCCCC-EEEEEe-CCCcEEEEEcccCCccceeeehhhh-hccCCcEEEEEEc
Q 043707          267 CK--CLESINAHDDAINSVVAGFDS-LVFTGS-ADGTVKVWRRELQGKGTKHFLAQVL-LKQENAITALAVN  333 (347)
Q Consensus       267 ~~--~~~~~~~h~~~v~~i~~~~~~-~l~s~~-~dg~I~vwd~~~~~~~~~~~~~~~~-~~h~~~V~~l~~~  333 (347)
                      ++  .+..+.. ...+..++|+|++ +|++++ .++.|.+|++.....    .+.... ..+...+.||+|.
T Consensus       294 g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g----~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          294 GTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATG----LLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             CCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTC----CEEECSCCEECSSEEEEEEE
T ss_pred             CcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCC----cEeecceeeeCCCCeEEEEc
Confidence            44  4555555 5678899999998 666666 689999987753221    011111 2244578899886

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.50  E-value=6.5e-13  Score=129.25  Aligned_cols=176  Identities=10%  Similarity=0.071  Sum_probs=122.0

Q ss_pred             ecCCE-EEEec-CCCcEEEEeCC----Ccceeeec-----CCCCeeEEEEeCCCCEEEEEeCC----------CcEEEEe
Q 043707          131 ASGDL-LYTGS-DSKNIRVWKNL----KEFSGFKS-----NSGLVKAIIITGDSNKIFTGHQD----------GKIRIWK  189 (347)
Q Consensus       131 ~~~~~-l~tg~-~dg~I~vwd~~----~~~~~~~~-----h~~~V~~l~~sp~~~~l~s~~~D----------g~I~vwd  189 (347)
                      ++|++ |+... .+..|++|+..    .....+..     |...+.+++|+|||+.|+.++.|          ..|++||
T Consensus        88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~  167 (662)
T 3azo_A           88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVP  167 (662)
T ss_dssp             SSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEE
T ss_pred             cCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEE
Confidence            67887 66554 36778888865    55555555     66788999999999999999877          5899999


Q ss_pred             cCC------CCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCC------
Q 043707          190 VSR------KNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDK------  257 (347)
Q Consensus       190 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg------  257 (347)
                      +.+      ++.....  .                              .+...+..++|+|||++|+.++.++      
T Consensus       168 ~~~~~~~~~~~~~~l~--~------------------------------~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~  215 (662)
T 3azo_A          168 LDGSAAADRSAVRELS--D------------------------------DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWE  215 (662)
T ss_dssp             TTSTTTTCGGGSEESS--C------------------------------SCSSEECCCEECTTSSEEEEEEECTTCCTTT
T ss_pred             CCCCccccCCceeEEE--e------------------------------cCCCcccCceECCCCCEEEEEECCCCCCCCC
Confidence            987      3321100  0                              1345677789999999998877553      


Q ss_pred             --cEEEEeCC-CC---EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCc--EEEEEcccCCccceeeehhhhhccCCc--
Q 043707          258 --TLKVWRIS-DC---KCLESINAHDDAINSVVAGFDS-LVFTGSADGT--VKVWRRELQGKGTKHFLAQVLLKQENA--  326 (347)
Q Consensus       258 --~i~vwdl~-~~---~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~--I~vwd~~~~~~~~~~~~~~~~~~h~~~--  326 (347)
                        .|++||+. ++   +.......|...+..+.|+||+ +++++..++.  |.+||+..+.      .......+...  
T Consensus       216 ~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~------~~~l~~~~~~~~~  289 (662)
T 3azo_A          216 GTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA------ATQLCRREEEFAG  289 (662)
T ss_dssp             CEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCC------EEESSCCSSBSSC
T ss_pred             CcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCc------eeecccccccccC
Confidence              79999998 56   4444445567889999999998 6777778884  4455543221      11111122111  


Q ss_pred             ------EEEEEEccCCCEEEEecC
Q 043707          327 ------ITALAVNQESAVVYCGSS  344 (347)
Q Consensus       327 ------V~~l~~~p~~~~l~sgs~  344 (347)
                            +..++|+|+++++++++.
T Consensus       290 p~w~~~~~~~~~~~~~~~~~~~~~  313 (662)
T 3azo_A          290 PLWTPGMRWFAPLANGLIAVVHGK  313 (662)
T ss_dssp             CCCSTTCCSEEECTTSCEEEEEBS
T ss_pred             ccccccCceEeEeCCCEEEEEEEc
Confidence                  567899999999988865

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.49  E-value=1.4e-12  Score=117.75  Aligned_cols=175  Identities=9%  Similarity=0.032  Sum_probs=114.4

Q ss_pred             CCCcEEEEeCCC---cceeee----cCCCCeeEEEEeCCCCEEEEEeC-CCcEEEEecC-CCCCceeeeecccccccceE
Q 043707          141 DSKNIRVWKNLK---EFSGFK----SNSGLVKAIIITGDSNKIFTGHQ-DGKIRIWKVS-RKNPSVHKRVGSLPTFKDYV  211 (347)
Q Consensus       141 ~dg~I~vwd~~~---~~~~~~----~h~~~V~~l~~sp~~~~l~s~~~-Dg~I~vwd~~-~~~~~~~~~~~~~~~~~~~~  211 (347)
                      .+|.+.+|+...   ....+.    .+...+.+++|+|+|++|+++.. ++.|++||+. +++........         
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~---------  187 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVD---------  187 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEE---------
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEe---------
Confidence            689999998642   222222    24567999999999998887764 6799999998 55421111100         


Q ss_pred             EeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeCC--CCEEE---EEEec-------CCC
Q 043707          212 KSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRIS--DCKCL---ESINA-------HDD  278 (347)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~vwdl~--~~~~~---~~~~~-------h~~  278 (347)
                                         ...|...+..++|+|++++|++++. +++|.+|++.  +++..   ..+..       |..
T Consensus       188 -------------------~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~  248 (365)
T 1jof_A          188 -------------------APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDP  248 (365)
T ss_dssp             -------------------CSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCT
T ss_pred             -------------------cCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccc
Confidence                               0013566889999999999988775 7899999765  55542   22321       122


Q ss_pred             ------cEEEEE-eCCCC-EEEEEeCC-C-----cEEEEEcccCCccceeeehhhhhccCCcEEEEEEcc---CCCEEEE
Q 043707          279 ------AINSVV-AGFDS-LVFTGSAD-G-----TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQ---ESAVVYC  341 (347)
Q Consensus       279 ------~v~~i~-~~~~~-~l~s~~~d-g-----~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p---~~~~l~s  341 (347)
                            .+..++ |+||+ +|+++..+ +     .|.+|++...++  ..........+...+..++|+|   +|++|++
T Consensus       249 ~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~--~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v  326 (365)
T 1jof_A          249 ETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS--IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAI  326 (365)
T ss_dssp             TTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC--EEEEEEEEECSSCCTTCCCEEECTTCTTEEEE
T ss_pred             ccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCC--EEEeeeeeecCCCCcccceecCCCcCCCEEEE
Confidence                  588999 99998 66655432 2     899999963222  1110111222444567899999   8999999


Q ss_pred             ecCC
Q 043707          342 GSSD  345 (347)
Q Consensus       342 gs~D  345 (347)
                      ++.+
T Consensus       327 ~~~~  330 (365)
T 1jof_A          327 TDDQ  330 (365)
T ss_dssp             ECSS
T ss_pred             EEcC
Confidence            8765

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.48  E-value=5.6e-13  Score=118.70  Aligned_cols=152  Identities=11%  Similarity=0.140  Sum_probs=104.9

Q ss_pred             EeecCCEEEEecCCCcEEEEeCCCc--ceeeecCC-CCeeEEEEeCCCCEEE-EEeCCCcEEEEecCCCCCceeeeeccc
Q 043707          129 LAASGDLLYTGSDSKNIRVWKNLKE--FSGFKSNS-GLVKAIIITGDSNKIF-TGHQDGKIRIWKVSRKNPSVHKRVGSL  204 (347)
Q Consensus       129 l~~~~~~l~tg~~dg~I~vwd~~~~--~~~~~~h~-~~V~~l~~sp~~~~l~-s~~~Dg~I~vwd~~~~~~~~~~~~~~~  204 (347)
                      +..++.++++++.++.|++||....  ...+..+. ..+..++|+|++++++ ++..++.|.+||+.+++..........
T Consensus         7 ~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~   86 (349)
T 1jmx_B            7 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSV   86 (349)
T ss_dssp             CCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCS
T ss_pred             ccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccc
Confidence            3445678999999999999996533  34444332 2578999999998655 555789999999987753322211100


Q ss_pred             ccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCC------------CcEEEEeCCCC---EE
Q 043707          205 PTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWD------------KTLKVWRISDC---KC  269 (347)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d------------g~i~vwdl~~~---~~  269 (347)
                      +.                          .....+..++|+|++++|++++.+            +.|.+||+.++   +.
T Consensus        87 ~~--------------------------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  140 (349)
T 1jmx_B           87 PG--------------------------EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP  140 (349)
T ss_dssp             TT--------------------------EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC
T ss_pred             cc--------------------------cccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccce
Confidence            00                          002336789999999999998865            89999999874   33


Q ss_pred             EEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCC
Q 043707          270 LESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQG  309 (347)
Q Consensus       270 ~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~  309 (347)
                      +..+..+ ..+.+++|+|++.+++++.  .|.+||+....
T Consensus       141 ~~~~~~~-~~~~~~~~s~dg~l~~~~~--~i~~~d~~~~~  177 (349)
T 1jmx_B          141 VRTFPMP-RQVYLMRAADDGSLYVAGP--DIYKMDVKTGK  177 (349)
T ss_dssp             SEEEECC-SSCCCEEECTTSCEEEESS--SEEEECTTTCC
T ss_pred             eeeccCC-CcccceeECCCCcEEEccC--cEEEEeCCCCc
Confidence            4445433 3588899999986555543  49999987543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.47  E-value=7.4e-12  Score=110.70  Aligned_cols=176  Identities=11%  Similarity=0.119  Sum_probs=118.9

Q ss_pred             EEeecCCEEEEec------------CCCcEEEEeCCCc--ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 043707          128 SLAASGDLLYTGS------------DSKNIRVWKNLKE--FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRK  193 (347)
Q Consensus       128 ~l~~~~~~l~tg~------------~dg~I~vwd~~~~--~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~  193 (347)
                      ++.+++++|+++.            .++.|++||....  ...+.. ...+.+++|+|++++|+++  ++.|++||+.++
T Consensus        88 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~  164 (337)
T 1pby_B           88 ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAG  164 (337)
T ss_dssp             EECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTT
T ss_pred             EECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCC
Confidence            4556788888885            5799999997543  333332 4568899999999988888  689999999887


Q ss_pred             CCceeeeecc-------cccccceEEeccCCCeE-------------------------EEEeecce--eeeeecCCCee
Q 043707          194 NPSVHKRVGS-------LPTFKDYVKSSVNPKNY-------------------------VEVRRNRN--VLKIRHYDAVS  239 (347)
Q Consensus       194 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~--~~~~~h~~~V~  239 (347)
                      +.........       .+....++........+                         ++......  .....+...+.
T Consensus       165 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~  244 (337)
T 1pby_B          165 TLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYF  244 (337)
T ss_dssp             EEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEE
T ss_pred             cEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCcee
Confidence            6433222211       01111111111111111                         11111111  11223556788


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCC
Q 043707          240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQG  309 (347)
Q Consensus       240 ~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~  309 (347)
                      +++|+|++++|+++  ++.|.+||+.+++.+..+..+ ..+.+++|+|++ +|++++.++.|++||+....
T Consensus       245 ~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~  312 (337)
T 1pby_B          245 STAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             EEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred             eEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence            89999999999988  799999999999998888754 457899999998 78888889999999997554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.47  E-value=1.1e-11  Score=111.67  Aligned_cols=217  Identities=14%  Similarity=0.127  Sum_probs=135.8

Q ss_pred             ceeEeeeeccccEEEEeecCCEEEEec----------CCCcEEEEeCCC--cceeeec------CCCCeeEEEEeCCCCE
Q 043707          114 GLIGSIVRKEGHIYSLAASGDLLYTGS----------DSKNIRVWKNLK--EFSGFKS------NSGLVKAIIITGDSNK  175 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~~~~~l~tg~----------~dg~I~vwd~~~--~~~~~~~------h~~~V~~l~~sp~~~~  175 (347)
                      +++..+..+..+-.++++++++|+++.          .++.|.+||...  ....+..      +......++++|+|++
T Consensus        42 ~~~~~i~~g~~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~  121 (361)
T 2oiz_A           42 KFLGMVPTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKF  121 (361)
T ss_dssp             CEEEEEECCEEEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSE
T ss_pred             eEEEEecCCCCCceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCE
Confidence            345566555555446667899888876          367899999653  3334432      2345778999999999


Q ss_pred             EEEEeC--CCcEEEEecCCCCCcee-eeecc------cccc-cceEEeccCCCeEE-EEee-------------------
Q 043707          176 IFTGHQ--DGKIRIWKVSRKNPSVH-KRVGS------LPTF-KDYVKSSVNPKNYV-EVRR-------------------  225 (347)
Q Consensus       176 l~s~~~--Dg~I~vwd~~~~~~~~~-~~~~~------~~~~-~~~~~~~~~~~~~~-~~~~-------------------  225 (347)
                      |+++..  ++.|.+||+.+++.... .....      .|.. ..++....++...+ ....                   
T Consensus       122 l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~  201 (361)
T 2oiz_A          122 IVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDD  201 (361)
T ss_dssp             EEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTS
T ss_pred             EEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCC
Confidence            998874  58999999988754332 11110      1111 11111111111100 0000                   


Q ss_pred             ------------------cceeeeeec------------------------CCCeeEEEEcCCCCEEEEEeC--------
Q 043707          226 ------------------NRNVLKIRH------------------------YDAVSCLSLNAEQGLLYSGSW--------  255 (347)
Q Consensus       226 ------------------~~~~~~~~h------------------------~~~V~~l~~~~~~~~l~s~s~--------  255 (347)
                                        ........-                        ......++|+|+++.++++..        
T Consensus       202 ~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~  281 (361)
T 2oiz_A          202 PIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTH  281 (361)
T ss_dssp             CBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCT
T ss_pred             ceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccc
Confidence                              000000000                        001112788999888877643        


Q ss_pred             ---CCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEE
Q 043707          256 ---DKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALA  331 (347)
Q Consensus       256 ---dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~  331 (347)
                         +++|.+||+.+++.+.++..+.  +..|+|+||+ +|++++. +.|.+||..+...    ..+..+..+......++
T Consensus       282 ~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l----~~~~~i~~~G~~P~~~~  354 (361)
T 2oiz_A          282 KFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEP----KLLRTIEGAAEASLQVQ  354 (361)
T ss_dssp             TCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSC----EEEEEETTSCSSEEEEE
T ss_pred             cCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcc----eeeEEeccCCCCcEEEE
Confidence               3479999999999999999887  8999999998 7777776 9999999986410    13455455667788999


Q ss_pred             EccCCC
Q 043707          332 VNQESA  337 (347)
Q Consensus       332 ~~p~~~  337 (347)
                      ++|+|+
T Consensus       355 ~~p~G~  360 (361)
T 2oiz_A          355 FHPVGG  360 (361)
T ss_dssp             ECCCSC
T ss_pred             ecCCCC
Confidence            999985

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.46  E-value=7e-13  Score=130.92  Aligned_cols=178  Identities=9%  Similarity=0.046  Sum_probs=119.3

Q ss_pred             EeecCCEEEEecCCCcEEEEeCC--CcceeeecCCC-----CeeEEEEeCCCCEEEEEeCC---------CcEEEEecCC
Q 043707          129 LAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSG-----LVKAIIITGDSNKIFTGHQD---------GKIRIWKVSR  192 (347)
Q Consensus       129 l~~~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~-----~V~~l~~sp~~~~l~s~~~D---------g~I~vwd~~~  192 (347)
                      +.+++++++++  ||+|++||..  +....+..|..     ....++|+|||++|+.++.+         +.+.+||+.+
T Consensus        24 w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~  101 (740)
T 4a5s_A           24 WISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK  101 (740)
T ss_dssp             ECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred             ECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCC
Confidence            33457788886  8999999954  33444555543     23458999999999999876         5567999998


Q ss_pred             CCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEE
Q 043707          193 KNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES  272 (347)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~  272 (347)
                      ++....                                 ..|...+...+|+|||+.|+.+. |+.|++||+.+++....
T Consensus       102 ~~~~~l---------------------------------~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~l  147 (740)
T 4a5s_A          102 RQLITE---------------------------------ERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRI  147 (740)
T ss_dssp             TEECCS---------------------------------SCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC
T ss_pred             CcEEEc---------------------------------ccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEE
Confidence            753211                                 12667799999999999998885 78999999988764432


Q ss_pred             -EecCCCcE-----------------EEEEeCCCC-EEEEEeCCC-----------------------------------
Q 043707          273 -INAHDDAI-----------------NSVVAGFDS-LVFTGSADG-----------------------------------  298 (347)
Q Consensus       273 -~~~h~~~v-----------------~~i~~~~~~-~l~s~~~dg-----------------------------------  298 (347)
                       ..++...+                 ..+.|+||| .||.++.|.                                   
T Consensus       148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~  227 (740)
T 4a5s_A          148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPT  227 (740)
T ss_dssp             CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCE
T ss_pred             cCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCe
Confidence             12222222                 348899999 676654322                                   


Q ss_pred             -cEEEEEccc---CC--ccceeeehhhhhccCCcEEEEEEccCCCEEEEe
Q 043707          299 -TVKVWRREL---QG--KGTKHFLAQVLLKQENAITALAVNQESAVVYCG  342 (347)
Q Consensus       299 -~I~vwd~~~---~~--~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sg  342 (347)
                       +|++||+..   +.  +.........+.+|...+..++|+|||+.++..
T Consensus       228 ~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~  277 (740)
T 4a5s_A          228 VKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQW  277 (740)
T ss_dssp             EEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEE
T ss_pred             eEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEE
Confidence             477777765   31  100111111223477789999999999866654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.42  E-value=7.2e-12  Score=113.48  Aligned_cols=190  Identities=8%  Similarity=-0.038  Sum_probs=124.7

Q ss_pred             ceeEeeeeccccEEE-------EeecCCEEEEecC-CCc--EEEEeCCCc--ceeeecCCCCeeEEEEeCCCCEEEEEeC
Q 043707          114 GLIGSIVRKEGHIYS-------LAASGDLLYTGSD-SKN--IRVWKNLKE--FSGFKSNSGLVKAIIITGDSNKIFTGHQ  181 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~-------l~~~~~~l~tg~~-dg~--I~vwd~~~~--~~~~~~h~~~V~~l~~sp~~~~l~s~~~  181 (347)
                      +.+..+..|.+....       ++++|++|+.++. +|.  |.+||....  ......+...+..++|+|+++.|+.++.
T Consensus        21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~  100 (388)
T 3pe7_A           21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKD  100 (388)
T ss_dssp             CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEET
T ss_pred             cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeC
Confidence            345666666665544       5677888888776 674  777785432  3333445455557889999999999999


Q ss_pred             CCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEE--EEcCCCCEEEEE------
Q 043707          182 DGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCL--SLNAEQGLLYSG------  253 (347)
Q Consensus       182 Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l--~~~~~~~~l~s~------  253 (347)
                      ++.|++||+.+++......                                .+...+...  .+++++.+++..      
T Consensus       101 ~~~l~~~d~~~g~~~~~~~--------------------------------~~~~~~~~~~~~~~~dg~~l~~~~~~~~~  148 (388)
T 3pe7_A          101 GRNLMRVDLATLEENVVYQ--------------------------------VPAEWVGYGTWVANSDCTKLVGIEIRRED  148 (388)
T ss_dssp             TTEEEEEETTTCCEEEEEE--------------------------------CCTTEEEEEEEEECTTSSEEEEEEEEGGG
T ss_pred             CCeEEEEECCCCcceeeee--------------------------------chhhcccccceeECCCCCeeccccccCcc
Confidence            9999999999876322211                                122223222  347788777642      


Q ss_pred             ----------------eCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCC-CC-EEEEEeCC------CcEEEEEcccCC
Q 043707          254 ----------------SWDKTLKVWRISDCKCLESINAHDDAINSVVAGF-DS-LVFTGSAD------GTVKVWRRELQG  309 (347)
Q Consensus       254 ----------------s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~-~~-~l~s~~~d------g~I~vwd~~~~~  309 (347)
                                      ..+..|.+||+.+++.. .+..+...+..+.|+| ++ .|+....+      ..|.++|+....
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~  227 (388)
T 3pe7_A          149 WVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN  227 (388)
T ss_dssp             CCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC
T ss_pred             cccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc
Confidence                            23478999999988654 3445667789999999 87 56555543      367777765321


Q ss_pred             ccceeeehhhhhccC--CcEEEEEEccCCCEEEEec
Q 043707          310 KGTKHFLAQVLLKQE--NAITALAVNQESAVVYCGS  343 (347)
Q Consensus       310 ~~~~~~~~~~~~~h~--~~V~~l~~~p~~~~l~sgs  343 (347)
                             ...+..+.  ..+..++|+|||+.|+..+
T Consensus       228 -------~~~l~~~~~~~~~~~~~~spdg~~l~~~~  256 (388)
T 3pe7_A          228 -------MRKVKTHAEGESCTHEFWVPDGSALVYVS  256 (388)
T ss_dssp             -------CEESCCCCTTEEEEEEEECTTSSCEEEEE
T ss_pred             -------eEEeeeCCCCcccccceECCCCCEEEEEe
Confidence                   22223333  3588899999998776544

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.41  E-value=6e-12  Score=122.44  Aligned_cols=179  Identities=6%  Similarity=-0.043  Sum_probs=120.9

Q ss_pred             ccccEEEEe--ecCCEEEEecCC----------CcEEEEeCCC-------cceeee-cCCCCeeEEEEeCCCCEEEEEeC
Q 043707          122 KEGHIYSLA--ASGDLLYTGSDS----------KNIRVWKNLK-------EFSGFK-SNSGLVKAIIITGDSNKIFTGHQ  181 (347)
Q Consensus       122 h~~~V~~l~--~~~~~l~tg~~d----------g~I~vwd~~~-------~~~~~~-~h~~~V~~l~~sp~~~~l~s~~~  181 (347)
                      |...+.++.  ++|+.|+.++.+          ..|++||...       ....+. .+...+..++|+|||++|+.++.
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~  207 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAW  207 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEE
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEEC
Confidence            445555554  578889888776          5899999654       344555 56678889999999999998876


Q ss_pred             CC--------cEEEEecC-CCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEE
Q 043707          182 DG--------KIRIWKVS-RKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYS  252 (347)
Q Consensus       182 Dg--------~I~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s  252 (347)
                      ++        .|++||+. ++.......                             +..+|...+..++|+||++++++
T Consensus       208 ~~~~~~~~~~~i~~~d~~~~g~~~~~~~-----------------------------l~~~~~~~~~~~~~spdg~l~~~  258 (662)
T 3azo_A          208 DHPRMPWEGTELKTARVTEDGRFADTRT-----------------------------LLGGPEEAIAQAEWAPDGSLIVA  258 (662)
T ss_dssp             CTTCCTTTCEEEEEEEECTTSCEEEEEE-----------------------------EEEETTBCEEEEEECTTSCEEEE
T ss_pred             CCCCCCCCCcEEEEEEECCCCcccccEE-----------------------------eCCCCCceEcceEECCCCeEEEE
Confidence            53        79999998 442111111                             11135678899999999998888


Q ss_pred             EeCCC--cEEEEeCCCCEEEEEEecCCCc--------EEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhh
Q 043707          253 GSWDK--TLKVWRISDCKCLESINAHDDA--------INSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLL  321 (347)
Q Consensus       253 ~s~dg--~i~vwdl~~~~~~~~~~~h~~~--------v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~  321 (347)
                      +..++  .|.+||+.+++.......+...        +..++|++++ +++++.. +.++||.+.....     ....+.
T Consensus       259 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~-----~~~~l~  332 (662)
T 3azo_A          259 TDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG-----ELVDAA  332 (662)
T ss_dssp             ECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT-----EEEECC
T ss_pred             ECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC-----cEEEec
Confidence            88888  5666777666654433333222        4678888877 7777778 9999996653322     134455


Q ss_pred             ccCCcEEEE-EEccC
Q 043707          322 KQENAITAL-AVNQE  335 (347)
Q Consensus       322 ~h~~~V~~l-~~~p~  335 (347)
                      .|...+..+ +++.+
T Consensus       333 ~~~~~~~~~~s~~~~  347 (662)
T 3azo_A          333 GPWTEWAATLTVSGT  347 (662)
T ss_dssp             SSCCEEEEEEEEETT
T ss_pred             CCCCeEEEEEecCCC
Confidence            666677777 55433

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.38  E-value=9.3e-10  Score=97.48  Aligned_cols=227  Identities=15%  Similarity=0.051  Sum_probs=134.6

Q ss_pred             eeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCC-cceeee-cCCCCeeEEEEeCCCCEEEEEeCC----CcEE
Q 043707          115 LIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK-EFSGFK-SNSGLVKAIIITGDSNKIFTGHQD----GKIR  186 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~-~~~~~~-~h~~~V~~l~~sp~~~~l~s~~~D----g~I~  186 (347)
                      .+..+..+...+.++.+  ++++++++..++.|++||... ....+. .+...+.+++++++++++++...+    +.|.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~  115 (333)
T 2dg1_A           36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF  115 (333)
T ss_dssp             EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred             eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEE
Confidence            45555556566666665  477788888899999999653 233332 466789999999999887777766    6899


Q ss_pred             EEecCCCCCceeee-ec---------ccccccceEEeccC------CCeEEEEeec--ceeeeeecCCCeeEEEEcCCCC
Q 043707          187 IWKVSRKNPSVHKR-VG---------SLPTFKDYVKSSVN------PKNYVEVRRN--RNVLKIRHYDAVSCLSLNAEQG  248 (347)
Q Consensus       187 vwd~~~~~~~~~~~-~~---------~~~~~~~~~~~~~~------~~~~~~~~~~--~~~~~~~h~~~V~~l~~~~~~~  248 (347)
                      +||.+++....... ..         ..+.. .++.....      ...++.+...  .......+...+..++|+|+++
T Consensus       116 ~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~  194 (333)
T 2dg1_A          116 AATENGDNLQDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEK  194 (333)
T ss_dssp             EECTTSCSCEEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSS
T ss_pred             EEeCCCCEEEEEEccCccCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCC
Confidence            99988775431111 00         01111 11111111      1122222111  1112222334578899999998


Q ss_pred             EEEEE-eCCCcEEEEeCCC-CEEEEE--------EecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeeh
Q 043707          249 LLYSG-SWDKTLKVWRISD-CKCLES--------INAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLA  317 (347)
Q Consensus       249 ~l~s~-s~dg~i~vwdl~~-~~~~~~--------~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~  317 (347)
                      .|+.+ +.++.|.+||+++ ++.+..        +..+ ..+..+++.+++ ++++...++.|.+||.. +.. ......
T Consensus       195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~-~~~~~~  271 (333)
T 2dg1_A          195 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYP-IGQILI  271 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCE-EEEEEC
T ss_pred             EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC-CCE-EEEEEc
Confidence            66544 5578999999963 332211        1122 467889999988 44455567899999984 221 111100


Q ss_pred             hh-hhccCCcEEEEEEccCCCEEEEecCC
Q 043707          318 QV-LLKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       318 ~~-~~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                      .. ..+|...+.+++|+|+++.|+.++.+
T Consensus       272 ~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          272 PGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             TTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             CCCccccccCcceEEECCCCCEEEEEeCc
Confidence            00 01223368999999998888766655

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.38  E-value=7.5e-10  Score=98.29  Aligned_cols=215  Identities=12%  Similarity=0.079  Sum_probs=134.3

Q ss_pred             cEEEEe--ecCCEEEEecCC------------------------CcEEEEeCC--Ccceeee-cCCCCeeEEEEeCCCCE
Q 043707          125 HIYSLA--ASGDLLYTGSDS------------------------KNIRVWKNL--KEFSGFK-SNSGLVKAIIITGDSNK  175 (347)
Q Consensus       125 ~V~~l~--~~~~~l~tg~~d------------------------g~I~vwd~~--~~~~~~~-~h~~~V~~l~~sp~~~~  175 (347)
                      .+.+++  ++|+++++...+                        +.|++||..  +....+. .+-.....|+++|+|+.
T Consensus        25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l  104 (329)
T 3fvz_A           25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNY  104 (329)
T ss_dssp             CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCE
T ss_pred             CceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCE
Confidence            344554  457788877766                        479999964  2232222 23357899999999998


Q ss_pred             EEEEeCCCcEEEEecCCCC-Cceeee-----------------ecccccccceEEecc-CCCeEEEEeecce-eeeee--
Q 043707          176 IFTGHQDGKIRIWKVSRKN-PSVHKR-----------------VGSLPTFKDYVKSSV-NPKNYVEVRRNRN-VLKIR--  233 (347)
Q Consensus       176 l~s~~~Dg~I~vwd~~~~~-~~~~~~-----------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~--  233 (347)
                      +++...++.|++||..... ......                 +...+....++.+.. ....+..+..... ....+  
T Consensus       105 ~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~  184 (329)
T 3fvz_A          105 WVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEE  184 (329)
T ss_dssp             EEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEE
T ss_pred             EEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccC
Confidence            8888889999999986542 111110                 011111122222221 1222222221111 11111  


Q ss_pred             ---------cCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCEEEEEEe--cCCCcEEEEEeCCCCEEE-EE------
Q 043707          234 ---------HYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCKCLESIN--AHDDAINSVVAGFDSLVF-TG------  294 (347)
Q Consensus       234 ---------h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwdl~~~~~~~~~~--~h~~~v~~i~~~~~~~l~-s~------  294 (347)
                               +......|+++|+ +.++++...+++|++||..+++.+..+.  .+...+..++++| ++++ +.      
T Consensus       185 g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~  263 (329)
T 3fvz_A          185 SSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFG  263 (329)
T ss_dssp             CCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTT
T ss_pred             CCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEec
Confidence                     1233789999998 6677777778999999999899988884  4566788999999 5332 22      


Q ss_pred             -eCCCcEEEEEcccCCccceeeehhhh---hccCCcEEEEEEccCCCEEEEecCCC
Q 043707          295 -SADGTVKVWRRELQGKGTKHFLAQVL---LKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       295 -~~dg~I~vwd~~~~~~~~~~~~~~~~---~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                       ..+..|++|+...+.      .+..+   ..+...+..|+++|+|.++++...++
T Consensus       264 ~~~~~~v~~~~~~~g~------~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~  313 (329)
T 3fvz_A          264 DQEPVQGFVMNFSSGE------IIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTN  313 (329)
T ss_dssp             CSCCCCEEEEETTTCC------EEEEECCSSSCCSSEEEEEECTTSEEEEEESSSC
T ss_pred             cCCCcEEEEEEcCCCe------EEEEEcCCCCccCCeeEEEECCCCCEEEEECCCC
Confidence             234589999987543      22222   35667799999999997777766554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.37  E-value=1.4e-10  Score=100.62  Aligned_cols=182  Identities=11%  Similarity=0.137  Sum_probs=124.8

Q ss_pred             ccEEEEee--cCCEEEEecCCCcEEEEeCCCc-ceeee------cCCCCeeEEEEe-CCCCEEEEEeC-CCcEEEEecCC
Q 043707          124 GHIYSLAA--SGDLLYTGSDSKNIRVWKNLKE-FSGFK------SNSGLVKAIIIT-GDSNKIFTGHQ-DGKIRIWKVSR  192 (347)
Q Consensus       124 ~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~~-~~~~~------~h~~~V~~l~~s-p~~~~l~s~~~-Dg~I~vwd~~~  192 (347)
                      ....++..  +++++++...++.|++||.... ...+.      .+...+.++++. ++++.+++... ++.|++||. +
T Consensus        30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~  108 (286)
T 1q7f_A           30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y  108 (286)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred             CCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-C
Confidence            34555554  5778888888999999986533 22332      234578999995 66655555543 889999994 3


Q ss_pred             CCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEE
Q 043707          193 KNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES  272 (347)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~  272 (347)
                      ++.......                               .+...+..++++++++++++...++.|.+||. +++.+..
T Consensus       109 g~~~~~~~~-------------------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~  156 (286)
T 1q7f_A          109 GQFVRKFGA-------------------------------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHK  156 (286)
T ss_dssp             SCEEEEECT-------------------------------TTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEE
T ss_pred             CcEEEEecC-------------------------------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEE
Confidence            332111100                               13456789999999998888778899999996 4666666


Q ss_pred             Ee--cCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhh--ccCCcEEEEEEccCCCEEEEecCC
Q 043707          273 IN--AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLL--KQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       273 ~~--~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~--~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                      +.  .+...+..|++++++ ++++...++.|++||...  +     ....+.  ++...+..|+++++|+++++...+
T Consensus       157 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g--~-----~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~  227 (286)
T 1q7f_A          157 FGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG--Q-----YLRQIGGEGITNYPIGVGINSNGEILIADNHN  227 (286)
T ss_dssp             EECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC--C-----EEEEESCTTTSCSEEEEEECTTCCEEEEECSS
T ss_pred             eCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC--C-----EEEEEccCCccCCCcEEEECCCCCEEEEeCCC
Confidence            64  344568999999998 455556789999999752  1     112222  233578999999999988887655

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.37  E-value=1.3e-10  Score=100.78  Aligned_cols=183  Identities=14%  Similarity=0.226  Sum_probs=123.2

Q ss_pred             ccEEEEee---cCCEEEEecC-CCcEEEEeCCCc-ceeee-cCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCce
Q 043707          124 GHIYSLAA---SGDLLYTGSD-SKNIRVWKNLKE-FSGFK-SNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSV  197 (347)
Q Consensus       124 ~~V~~l~~---~~~~l~tg~~-dg~I~vwd~~~~-~~~~~-~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~  197 (347)
                      ..+.++++   +++++++... ++.|++|+.... +..+. .+...+.++++.++++.+++...++.|++||.... ...
T Consensus        77 ~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~  155 (286)
T 1q7f_A           77 LYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-VLH  155 (286)
T ss_dssp             SSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEE
T ss_pred             cCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-EEE
Confidence            45666665   3445555533 789999994433 33332 23457899999999988888788899999996432 111


Q ss_pred             eeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecC-
Q 043707          198 HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH-  276 (347)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h-  276 (347)
                      ....                              ..+...+..|+++++++++++...++.|++||. +++.+..+..+ 
T Consensus       156 ~~~~------------------------------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g  204 (286)
T 1q7f_A          156 KFGC------------------------------SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEG  204 (286)
T ss_dssp             EEEC------------------------------TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTT
T ss_pred             EeCC------------------------------CCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCC
Confidence            1000                              014456889999999988888778999999997 56667777543 


Q ss_pred             -CCcEEEEEeCCCC-EEEEEeCCC-cEEEEEcccCCccceeeehhhhhcc--CCcEEEEEEccCCCEEEEecCCC
Q 043707          277 -DDAINSVVAGFDS-LVFTGSADG-TVKVWRRELQGKGTKHFLAQVLLKQ--ENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       277 -~~~v~~i~~~~~~-~l~s~~~dg-~I~vwd~~~~~~~~~~~~~~~~~~h--~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                       ...+..|++++++ ++++...++ .|.+||..  ++     .+..+..+  ...+.+++++|+|+++++ +.|+
T Consensus       205 ~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~--g~-----~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~  271 (286)
T 1q7f_A          205 ITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--GQ-----LISALESKVKHAQCFDVALMDDGSVVLA-SKDY  271 (286)
T ss_dssp             TSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--SC-----EEEEEEESSCCSCEEEEEEETTTEEEEE-ETTT
T ss_pred             ccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC--CC-----EEEEEcccCCCCcceeEEECCCCcEEEE-CCCC
Confidence             3578899999998 555555565 99999964  22     12222222  235789999999987776 4454

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.26  E-value=4.6e-10  Score=99.92  Aligned_cols=201  Identities=11%  Similarity=0.103  Sum_probs=121.8

Q ss_pred             EEeecCCEEEEecCC---C--cEEEEeCCC-cceeeecCCCCeeEEEEeCCCCEEEEEeCC-------------------
Q 043707          128 SLAASGDLLYTGSDS---K--NIRVWKNLK-EFSGFKSNSGLVKAIIITGDSNKIFTGHQD-------------------  182 (347)
Q Consensus       128 ~l~~~~~~l~tg~~d---g--~I~vwd~~~-~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D-------------------  182 (347)
                      +++++|++|+..+.+   +  .|++|+... ....+..+.. +..++|+|+++.|+.++.+                   
T Consensus        65 ~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g  143 (347)
T 2gop_A           65 RISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDD  143 (347)
T ss_dssp             EECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---
T ss_pred             EECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecC
Confidence            455678888877643   3  377777543 2333333334 9999999999998888743                   


Q ss_pred             --------CcEEEEecCCCCC-ceeee-----ecccccccceEEeccC--------CCeEEEEeecceeeeeecCCCeeE
Q 043707          183 --------GKIRIWKVSRKNP-SVHKR-----VGSLPTFKDYVKSSVN--------PKNYVEVRRNRNVLKIRHYDAVSC  240 (347)
Q Consensus       183 --------g~I~vwd~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~h~~~V~~  240 (347)
                              ..|.+||+.+++. .....     +...+.. -++.....        ...++.+..........+ ..+..
T Consensus       144 ~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~  221 (347)
T 2gop_A          144 LGFFDGEKTTFWIFDTESEEVIEEFEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYA  221 (347)
T ss_dssp             ------CEEEEEEEETTTTEEEEEEEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEE
T ss_pred             cccccCccceEEEEECCCCeEEeeecCCCcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEeccC-cceee
Confidence                    5689999987754 21111     0111222 11112111        112222222222222233 34443


Q ss_pred             EEEcCCCCEEEEEeCC--------CcEEEEeCCCCEEEEEEecCCCcEEE-EEeCCCCEEEEEeCCCcEEEEEcccCCcc
Q 043707          241 LSLNAEQGLLYSGSWD--------KTLKVWRISDCKCLESINAHDDAINS-VVAGFDSLVFTGSADGTVKVWRRELQGKG  311 (347)
Q Consensus       241 l~~~~~~~~l~s~s~d--------g~i~vwdl~~~~~~~~~~~h~~~v~~-i~~~~~~~l~s~~~dg~I~vwd~~~~~~~  311 (347)
                        ++|+|+.|+.++.+        ..|.+||  +++.......+...+.. +.|+ ++++++++.++.++|| +. .++ 
T Consensus       222 --~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~-~g~-  293 (347)
T 2gop_A          222 --VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GKVYFTLFEEGSVNLY-IW-DGE-  293 (347)
T ss_dssp             --EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TEEEEEEEETTEEEEE-EE-SSS-
T ss_pred             --ECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-CcEEEEEecCCcEEEE-Ec-CCc-
Confidence              48999988877654        3688888  56554444556777886 8999 7888888999999999 87 332 


Q ss_pred             ceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          312 TKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       312 ~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                          . ..+..+...|.+++|+|  .++++++.++
T Consensus       294 ----~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~  321 (347)
T 2gop_A          294 ----I-KPIAKGRHWIMGFDVDE--IVVYLKETAT  321 (347)
T ss_dssp             ----E-EEEECSSSEEEEEEESS--SEEEEEECSS
T ss_pred             ----e-EEEecCCCeEEeeeeeC--cEEEEEcCCC
Confidence                1 22334467899999999  6777776654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.25  E-value=2.1e-10  Score=102.18  Aligned_cols=164  Identities=12%  Similarity=0.092  Sum_probs=107.5

Q ss_pred             cCCEEEEec---------CCCcEEEEeCCCc-ceeeecCCCCeeEEEEeCCCCEEEEEeCC---Cc--EEEEecCCCCCc
Q 043707          132 SGDLLYTGS---------DSKNIRVWKNLKE-FSGFKSNSGLVKAIIITGDSNKIFTGHQD---GK--IRIWKVSRKNPS  196 (347)
Q Consensus       132 ~~~~l~tg~---------~dg~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s~~~D---g~--I~vwd~~~~~~~  196 (347)
                      +|+.++...         .++.|++|+.... ...+    ..+..++|+|+|++|+.++.+   +.  |.+||+.+++..
T Consensus        23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~   98 (347)
T 2gop_A           23 KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSK   98 (347)
T ss_dssp             ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred             CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceE
Confidence            777655431         2567899986533 2233    568899999999999888754   33  777777665321


Q ss_pred             eeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCC--------------------
Q 043707          197 VHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWD--------------------  256 (347)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d--------------------  256 (347)
                      ...                                 .+.. +..++|+|+++.|+.++.+                    
T Consensus        99 ~l~---------------------------------~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~  144 (347)
T 2gop_A           99 KIL---------------------------------EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDL  144 (347)
T ss_dssp             EEE---------------------------------EESE-EEEEEECTTSSEEEEEEECCCC---------CCCC----
T ss_pred             EEE---------------------------------cCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCc
Confidence            111                                 1223 8899999999988887632                    


Q ss_pred             -------CcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEEEEEeCCC-------cEEEEEcccCCccceeeehhhhhc
Q 043707          257 -------KTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADG-------TVKVWRRELQGKGTKHFLAQVLLK  322 (347)
Q Consensus       257 -------g~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg-------~I~vwd~~~~~~~~~~~~~~~~~~  322 (347)
                             ..|.+||+.+++.+..+.. . .+..+.|+|+++++++..++       ...||.+. .++      ...+..
T Consensus       145 ~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d-~~~------~~~l~~  215 (347)
T 2gop_A          145 GFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE-DGK------EEKMFE  215 (347)
T ss_dssp             -----CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE-TTE------EEEEEE
T ss_pred             ccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeC-CCc------eEEecc
Confidence                   5699999999887555554 3 78889999999555555442       45666655 332      112222


Q ss_pred             cCCcEEEEEEccCCCEEEEecCC
Q 043707          323 QENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       323 h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                      + ..+..+  +|+|+.|+.++.+
T Consensus       216 ~-~~~~~~--spdg~~l~~~~~~  235 (347)
T 2gop_A          216 K-VSFYAV--DSDGERILLYGKP  235 (347)
T ss_dssp             E-ESEEEE--EECSSCEEEEECC
T ss_pred             C-cceeeE--CCCCCEEEEEEcc
Confidence            3 445544  9999988877654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.24  E-value=1.4e-09  Score=93.13  Aligned_cols=182  Identities=8%  Similarity=0.031  Sum_probs=122.3

Q ss_pred             EEEEe--ecCCEEEEecCCCcEEEEeCCCcc-eeee-cCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeee
Q 043707          126 IYSLA--ASGDLLYTGSDSKNIRVWKNLKEF-SGFK-SNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRV  201 (347)
Q Consensus       126 V~~l~--~~~~~l~tg~~dg~I~vwd~~~~~-~~~~-~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~  201 (347)
                      +.++.  .+++++++.. ++.|++||..... ..+. .....+.++++.++++.+++...++.|.+|+..+.......  
T Consensus        69 p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~--  145 (270)
T 1rwi_B           69 PQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP--  145 (270)
T ss_dssp             CCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC--
T ss_pred             cceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec--
Confidence            33444  4567666655 8899999965432 2222 22257899999999987777777889999975443211100  


Q ss_pred             cccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEE
Q 043707          202 GSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAIN  281 (347)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~  281 (347)
                                                    ......+..++++++++++++...++.|.+||............+...+.
T Consensus       146 ------------------------------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~  195 (270)
T 1rwi_B          146 ------------------------------FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPW  195 (270)
T ss_dssp             ------------------------------CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEE
T ss_pred             ------------------------------cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCce
Confidence                                          01234577899999998777777788999999887665443333446688


Q ss_pred             EEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          282 SVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       282 ~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      .|++.+++ ++++...++.|.+|+......      ......+...+.+++++++|+++++...++
T Consensus       196 ~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~------~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~  255 (270)
T 1rwi_B          196 GIAVDEAGTVYVTEHNTNQVVKLLAGSTTS------TVLPFTGLNTPLAVAVDSDRTVYVADRGND  255 (270)
T ss_dssp             EEEECTTCCEEEEETTTSCEEEECTTCSCC------EECCCCSCSCEEEEEECTTCCEEEEEGGGT
T ss_pred             EEEECCCCCEEEEECCCCcEEEEcCCCCcc------eeeccCCCCCceeEEECCCCCEEEEECCCC
Confidence            99999998 444555688999999863221      111122335789999999999777776554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.23  E-value=4.7e-10  Score=97.17  Aligned_cols=171  Identities=8%  Similarity=-0.027  Sum_probs=121.6

Q ss_pred             CCEEEEecCCCcEEEEeCC--CcceeeecCC-CCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccc
Q 043707          133 GDLLYTGSDSKNIRVWKNL--KEFSGFKSNS-GLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKD  209 (347)
Q Consensus       133 ~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~-~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~  209 (347)
                      +++|++++.++.|++||..  +.+..+..+. ..+.++++.|+|+.|+  +.++.|+.||. +++.......        
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~--------   73 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAA--------   73 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEEC--------
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcC--------
Confidence            5689999999999999963  4455666555 4789999999999888  34778999998 5653322211        


Q ss_pred             eEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCCCEEEEEEec------CCCcEEE
Q 043707          210 YVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRISDCKCLESINA------HDDAINS  282 (347)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~vwdl~~~~~~~~~~~------h~~~v~~  282 (347)
                                             .....+.++.+.++++++++.+. ++.+..+|. +++.+..+..      +......
T Consensus        74 -----------------------~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~  129 (276)
T 3no2_A           74 -----------------------PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQ  129 (276)
T ss_dssp             -----------------------CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSC
T ss_pred             -----------------------CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccC
Confidence                                   12245778899999999999887 778888885 7888777652      1123445


Q ss_pred             EEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          283 VVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       283 i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      +...+++ ++++...++.|.+||.. ++.      +..+... ..+.++.+.++++.|++++.++
T Consensus       130 v~~~~~G~~lv~~~~~~~v~~~d~~-G~~------~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~  186 (276)
T 3no2_A          130 INKNKKGNYLVPLFATSEVREIAPN-GQL------LNSVKLS-GTPFSSAFLDNGDCLVACGDAH  186 (276)
T ss_dssp             CEECTTSCEEEEETTTTEEEEECTT-SCE------EEEEECS-SCCCEEEECTTSCEEEECBTTS
T ss_pred             ceECCCCCEEEEecCCCEEEEECCC-CCE------EEEEECC-CCccceeEcCCCCEEEEeCCCC
Confidence            5677777 88888899999999987 432      2222222 3455677888898888876653

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.22  E-value=8.4e-11  Score=106.07  Aligned_cols=145  Identities=6%  Similarity=0.030  Sum_probs=106.0

Q ss_pred             CeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEE
Q 043707          163 LVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLS  242 (347)
Q Consensus       163 ~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  242 (347)
                      .+..+++++...++++|+.+ .+++|++...+.........                      -.......+.. |+.|+
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~----------------------~~~~~~~~lp~-V~~l~   94 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTP----------------------LTFKWEKEIPD-VIFVC   94 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCC----------------------CCCSEEEECTT-EEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhcccccc----------------------ccceEEeeCCC-eeEEE
Confidence            68999999999999999988 56669876432100000000                      00011223666 99999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhc
Q 043707          243 LNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLK  322 (347)
Q Consensus       243 ~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~  322 (347)
                      |  ++.+|+++ .++.|++||+++......+..|...+.++.+.+.. ++++..||.|.+||+.....      .    .
T Consensus        95 f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~------~----~  160 (388)
T 1xip_A           95 F--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKST------K----Q  160 (388)
T ss_dssp             E--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCE------E----E
T ss_pred             E--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcc------c----c
Confidence            9  88999999 78999999998877666777788889888876543 88899999999999974332      1    1


Q ss_pred             cCCcEEEEEEccCCCEEEEecCCCC
Q 043707          323 QENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       323 h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      +...|++++|+|+|  ++.|..||+
T Consensus       161 ~~~~Vs~v~WSpkG--~~vg~~dg~  183 (388)
T 1xip_A          161 LAQNVTSFDVTNSQ--LAVLLKDRS  183 (388)
T ss_dssp             EEESEEEEEECSSE--EEEEETTSC
T ss_pred             ccCCceEEEEcCCc--eEEEEcCCc
Confidence            44589999999999  677777774

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.22  E-value=2.1e-10  Score=101.64  Aligned_cols=168  Identities=8%  Similarity=0.050  Sum_probs=113.3

Q ss_pred             EEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEec
Q 043707          135 LLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSS  214 (347)
Q Consensus       135 ~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  214 (347)
                      .++....++.++.| ..+....+..+...+.+++|+++++.++++..++.|.+||..+++......              
T Consensus        19 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~--------------   83 (333)
T 2dg1_A           19 SAVPIISESELQTI-TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV--------------   83 (333)
T ss_dssp             CSSCCCCGGGSCEE-ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE--------------
T ss_pred             ceeEEeecccCccc-ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee--------------
Confidence            34444566777888 334455566677778999999999888888889999999998765221110              


Q ss_pred             cCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCC----CcEEEEeCCCCEEEEEEe--cCCCcEEEEEeCCC
Q 043707          215 VNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWD----KTLKVWRISDCKCLESIN--AHDDAINSVVAGFD  288 (347)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d----g~i~vwdl~~~~~~~~~~--~h~~~v~~i~~~~~  288 (347)
                                        .+...+.+++++++++++++...+    +.|.+||..+++....+.  .+...+..+++.|+
T Consensus        84 ------------------~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~  145 (333)
T 2dg1_A           84 ------------------SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSK  145 (333)
T ss_dssp             ------------------CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTT
T ss_pred             ------------------CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCC
Confidence                              145679999999999988877766    689999998776543332  24457899999999


Q ss_pred             CEEEEEeCC-------CcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEe
Q 043707          289 SLVFTGSAD-------GTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCG  342 (347)
Q Consensus       289 ~~l~s~~~d-------g~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sg  342 (347)
                      +.++.+...       +.|..||.....       ...+..+...+..++|+|+++.|+.+
T Consensus       146 g~l~v~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~i~~~~dg~~l~v~  199 (333)
T 2dg1_A          146 GGFYFTDFRGYSTNPLGGVYYVSPDFRT-------VTPIIQNISVANGIALSTDEKVLWVT  199 (333)
T ss_dssp             SCEEEEECCCBTTBCCEEEEEECTTSCC-------EEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred             CCEEEEeccccccCCCceEEEEeCCCCE-------EEEeecCCCcccceEECCCCCEEEEE
Confidence            854444432       445555543211       11112233457899999999866544

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.20  E-value=2.3e-09  Score=102.06  Aligned_cols=176  Identities=8%  Similarity=0.059  Sum_probs=126.2

Q ss_pred             EeecCCEEEEecCCCcEEEEeCCC--cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecC--CCCCceeeeeccc
Q 043707          129 LAASGDLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVS--RKNPSVHKRVGSL  204 (347)
Q Consensus       129 l~~~~~~l~tg~~dg~I~vwd~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~--~~~~~~~~~~~~~  204 (347)
                      .++.+.++++...++.|.++|..+  .+..+. ....+..+.|+|+++++++++.|+.|.+||+.  +.+......    
T Consensus       163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~----  237 (567)
T 1qks_A          163 WDLENLFSVTLRDAGQIALIDGSTYEIKTVLD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK----  237 (567)
T ss_dssp             CCGGGEEEEEETTTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE----
T ss_pred             cCCCceEEEEeCCCCeEEEEECCCCeEEEEEe-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe----
Confidence            334455778888899999999653  344444 33467799999999999999999999999996  443222111    


Q ss_pred             ccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEc----CCCCEEEEEeC-CCcEEEEeCCCCEEEEEEecC---
Q 043707          205 PTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLN----AEQGLLYSGSW-DKTLKVWRISDCKCLESINAH---  276 (347)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~----~~~~~l~s~s~-dg~i~vwdl~~~~~~~~~~~h---  276 (347)
                                                   .......++|+    |+|++++++.. ++++.|+|..+.+.+..+...   
T Consensus       238 -----------------------------~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~  288 (567)
T 1qks_A          238 -----------------------------IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT  288 (567)
T ss_dssp             -----------------------------CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEEC
T ss_pred             -----------------------------cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccc
Confidence                                         22345689999    69998888765 699999999999998887632   


Q ss_pred             --------CCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          277 --------DDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       277 --------~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                              ...+..+..++++  +++....+|.|.++|......     +............++.|+|++++++++.
T Consensus       289 ~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~-----~~v~~i~~~~~~~d~~~~pdgr~~~va~  360 (567)
T 1qks_A          289 YDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN-----LKTTEISAERFLHDGGLDGSHRYFITAA  360 (567)
T ss_dssp             TTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE-----EEEEEEECCSSEEEEEECTTSCEEEEEE
T ss_pred             cccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc-----ceeeeeeccccccCceECCCCCEEEEEe
Confidence                    1257788888875  666777889999999864321     1111112234567899999999987765

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.19  E-value=2.6e-10  Score=103.08  Aligned_cols=154  Identities=10%  Similarity=0.034  Sum_probs=108.0

Q ss_pred             cceeeecCCCCeeE-----EEEeCCCCEEEEEeC-CCc--EEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEe
Q 043707          153 EFSGFKSNSGLVKA-----IIITGDSNKIFTGHQ-DGK--IRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVR  224 (347)
Q Consensus       153 ~~~~~~~h~~~V~~-----l~~sp~~~~l~s~~~-Dg~--I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (347)
                      ....+..|......     .+|+|||++|+.++. +|.  |.+||+.+++......                        
T Consensus        22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~------------------------   77 (388)
T 3pe7_A           22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTE------------------------   77 (388)
T ss_dssp             EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCC------------------------
T ss_pred             ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeee------------------------
Confidence            34445555544544     789999999998887 674  7788887764221110                        


Q ss_pred             ecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEE--eCCCC-EEEE--------
Q 043707          225 RNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV--AGFDS-LVFT--------  293 (347)
Q Consensus       225 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~--~~~~~-~l~s--------  293 (347)
                              .+...+..+.|+|+++.|+.++.++.|++||+.+++....+..+...+....  +++++ +++.        
T Consensus        78 --------~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~  149 (388)
T 3pe7_A           78 --------GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDW  149 (388)
T ss_dssp             --------SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGC
T ss_pred             --------CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCccc
Confidence                    2334444678999999999999999999999999988777776666554443  47887 4442        


Q ss_pred             --------------EeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEcc-CCCEEEEecCC
Q 043707          294 --------------GSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQ-ESAVVYCGSSD  345 (347)
Q Consensus       294 --------------~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~sgs~D  345 (347)
                                    ...+..|.+||+..+.       ...+..+...+..++|+| +|+.|+.++.+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~-------~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~  209 (388)
T 3pe7_A          150 VPLTDWKKFHEFYFTKPCCRLMRVDLKTGE-------STVILQENQWLGHPIYRPYDDSTVAFCHEG  209 (388)
T ss_dssp             CCCCSHHHHHHHGGGCCCEEEEEEETTTCC-------EEEEEEESSCEEEEEEETTEEEEEEEEECS
T ss_pred             ccccccchhhhhhccCCcceEEEEECCCCc-------eEEeecCCccccccEECCCCCCEEEEEEec
Confidence                          2245789999987543       223335566789999999 99988876653

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.19  E-value=1.8e-08  Score=87.99  Aligned_cols=204  Identities=10%  Similarity=0.092  Sum_probs=122.7

Q ss_pred             CCEEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeeccccccc--ce
Q 043707          133 GDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFK--DY  210 (347)
Q Consensus       133 ~~~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~--~~  210 (347)
                      +.++++...++.|+.||..............+.+++++++++++++ . ++.|.+||.++++..............  .-
T Consensus        25 ~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~d  102 (297)
T 3g4e_A           25 NSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFND  102 (297)
T ss_dssp             TEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEE
T ss_pred             CEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCC
Confidence            4577777788999999966443233334578999999999985544 4 568999998876532221111000000  01


Q ss_pred             EEeccCCCe--------------------EEEEeec-ceeeeeecCCCeeEEEEcCCCCEEEE-EeCCCcEEEEeC--CC
Q 043707          211 VKSSVNPKN--------------------YVEVRRN-RNVLKIRHYDAVSCLSLNAEQGLLYS-GSWDKTLKVWRI--SD  266 (347)
Q Consensus       211 ~~~~~~~~~--------------------~~~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~dg~i~vwdl--~~  266 (347)
                      +....++..                    ++.+... .......+....+.++|+|+++.|+. .+.++.|.+||+  .+
T Consensus       103 i~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~  182 (297)
T 3g4e_A          103 GKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQT  182 (297)
T ss_dssp             EEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTT
T ss_pred             EEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCC
Confidence            111112221                    2222111 11112223344678999999986654 455789999987  45


Q ss_pred             CEE-----EEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEc-cCCCEE
Q 043707          267 CKC-----LESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVN-QESAVV  339 (347)
Q Consensus       267 ~~~-----~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~-p~~~~l  339 (347)
                      ++.     +..+..+......+++.++| +.++...++.|.+||..++.      +...+..+...+++++|. |+++.|
T Consensus       183 G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~------~~~~i~~p~~~~t~~~f~g~d~~~L  256 (297)
T 3g4e_A          183 GQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK------RLQTVKLPVDKTTSCCFGGKNYSEM  256 (297)
T ss_dssp             CCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCC------EEEEEECSSSBEEEEEEESGGGCEE
T ss_pred             CcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCce------EEEEEECCCCCceEEEEeCCCCCEE
Confidence            542     22333344567889999988 44455567889999986443      344444555689999998 888776


Q ss_pred             EEecC
Q 043707          340 YCGSS  344 (347)
Q Consensus       340 ~sgs~  344 (347)
                      +.++.
T Consensus       257 ~vt~~  261 (297)
T 3g4e_A          257 YVTCA  261 (297)
T ss_dssp             EEEEB
T ss_pred             EEEcC
Confidence            65543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.17  E-value=1.6e-08  Score=96.30  Aligned_cols=227  Identities=13%  Similarity=0.129  Sum_probs=136.2

Q ss_pred             eeEeeeeccc-cEEEEeecCCEEEEecCCCcEEEEeCC--C--cceeeecCCCCeeEEEEe----CCCCEEEEEeC-CCc
Q 043707          115 LIGSIVRKEG-HIYSLAASGDLLYTGSDSKNIRVWKNL--K--EFSGFKSNSGLVKAIIIT----GDSNKIFTGHQ-DGK  184 (347)
Q Consensus       115 ~i~~l~~h~~-~V~~l~~~~~~l~tg~~dg~I~vwd~~--~--~~~~~~~h~~~V~~l~~s----p~~~~l~s~~~-Dg~  184 (347)
                      ++.++..... +...++++|+++++++.|+.|.+||..  +  ....+.. ......++|+    |+|++++++.. ++.
T Consensus       189 v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~  267 (567)
T 1qks_A          189 IKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQ  267 (567)
T ss_dssp             EEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTE
T ss_pred             EEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCCceeEEccccCCCCCEEEEEEccCCe
Confidence            4444443222 334556789999999999999999974  2  2333333 2346789999    69998887764 589


Q ss_pred             EEEEecCCCCCceeeeeccc----------ccccceEEeccCCCeEEEEeeccee-------------eeeecCCCeeEE
Q 043707          185 IRIWKVSRKNPSVHKRVGSL----------PTFKDYVKSSVNPKNYVEVRRNRNV-------------LKIRHYDAVSCL  241 (347)
Q Consensus       185 I~vwd~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~h~~~V~~l  241 (347)
                      |.|+|..+.+......+...          +....++.+......++.......+             ..+........+
T Consensus       268 v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~  347 (567)
T 1qks_A          268 YVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDG  347 (567)
T ss_dssp             EEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEE
T ss_pred             EEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCc
Confidence            99999888765544333221          0111122222112222222211111             122334456788


Q ss_pred             EEcCCCCEEEEEe-CCCcEEEEeCCCCEEEEEEec-----CCCcEEEEEeCCCC--EEEEEe-CCCcEEEEEcccCCcc-
Q 043707          242 SLNAEQGLLYSGS-WDKTLKVWRISDCKCLESINA-----HDDAINSVVAGFDS--LVFTGS-ADGTVKVWRRELQGKG-  311 (347)
Q Consensus       242 ~~~~~~~~l~s~s-~dg~i~vwdl~~~~~~~~~~~-----h~~~v~~i~~~~~~--~l~s~~-~dg~I~vwd~~~~~~~-  311 (347)
                      .|+|++++++++. .++.|.++|+.+++.+..+..     |.+.-.. .++|++  .++++. .++.|.++|....+.. 
T Consensus       348 ~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~  426 (567)
T 1qks_A          348 GLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPD  426 (567)
T ss_dssp             EECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTT
T ss_pred             eECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCcc
Confidence            9999999887776 478999999999998877764     3221112 257774  444443 5689999999753221 


Q ss_pred             ceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          312 TKHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       312 ~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                      .....++.+......-..|+.+|++++|.+..
T Consensus       427 ~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~  458 (567)
T 1qks_A          427 NAWKILDSFPALGGGSLFIKTHPNSQYLYVDA  458 (567)
T ss_dssp             TBTSEEEEEECSCSCCCCEECCTTCSEEEEEC
T ss_pred             ccCEEEEEEecCCCCCEEEEeCCCCCeEEEec
Confidence            11223344443333334577899999888754

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.17  E-value=3.9e-10  Score=102.04  Aligned_cols=205  Identities=9%  Similarity=-0.026  Sum_probs=117.6

Q ss_pred             EeecCCEEEEecC---CCcEEEEeCCCc-ceeeecCCCC-eeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecc
Q 043707          129 LAASGDLLYTGSD---SKNIRVWKNLKE-FSGFKSNSGL-VKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGS  203 (347)
Q Consensus       129 l~~~~~~l~tg~~---dg~I~vwd~~~~-~~~~~~h~~~-V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~  203 (347)
                      ++++|++|+....   +..|++||.... ...+..+... ...+.|+|+|++|+.++.++.|++||+.+++.........
T Consensus        43 ~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~  122 (396)
T 3c5m_A           43 FTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDE  122 (396)
T ss_dssp             BCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCT
T ss_pred             CCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEeccc
Confidence            4456666555433   246788885432 2333333333 3347899999999999999999999998876432222111


Q ss_pred             --cccccceEE-------------------------ec---cCCCeEEEE---eecceeeeeecCCCeeEEEEcC-CCCE
Q 043707          204 --LPTFKDYVK-------------------------SS---VNPKNYVEV---RRNRNVLKIRHYDAVSCLSLNA-EQGL  249 (347)
Q Consensus       204 --~~~~~~~~~-------------------------~~---~~~~~~~~~---~~~~~~~~~~h~~~V~~l~~~~-~~~~  249 (347)
                        .+....++.                         ..   ......+.+   ..........+...+..+.|+| ++..
T Consensus       123 ~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~  202 (396)
T 3c5m_A          123 EWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDST  202 (396)
T ss_dssp             TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEE
T ss_pred             ccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCE
Confidence              011000000                         00   011112222   2223333445677889999999 7876


Q ss_pred             EEEEeCC------CcEEEEeCCCCEEEEEEecC--CCcEEEEEeCCCC-EEEEEeCC-----CcEEEEEcccCCccceee
Q 043707          250 LYSGSWD------KTLKVWRISDCKCLESINAH--DDAINSVVAGFDS-LVFTGSAD-----GTVKVWRRELQGKGTKHF  315 (347)
Q Consensus       250 l~s~s~d------g~i~vwdl~~~~~~~~~~~h--~~~v~~i~~~~~~-~l~s~~~d-----g~I~vwd~~~~~~~~~~~  315 (347)
                      |+..+.+      ..|.+||+..++. ..+..+  ...+..+.|+|++ .|+.++.+     +.|++||+..+..    .
T Consensus       203 l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~----~  277 (396)
T 3c5m_A          203 VGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN----E  277 (396)
T ss_dssp             EEEEECSCSSSCSCCCEEEETTSCCC-EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE----E
T ss_pred             EEEEecCCCCCCCceEEEEECCCCce-eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe----E
Confidence            7666543      4688999876543 333323  2357889999998 45554433     4499999875432    1


Q ss_pred             ehhhhhccCCcEEEEEEcc-CCCEEEEec
Q 043707          316 LAQVLLKQENAITALAVNQ-ESAVVYCGS  343 (347)
Q Consensus       316 ~~~~~~~h~~~V~~l~~~p-~~~~l~sgs  343 (347)
                      .+..+.    ... +.|+| +|++|+.++
T Consensus       278 ~l~~~~----~~~-~~~s~~dg~~l~~~~  301 (396)
T 3c5m_A          278 EVMVMP----PCS-HLMSNFDGSLMVGDG  301 (396)
T ss_dssp             EEEECC----SEE-EEEECSSSSEEEEEE
T ss_pred             EeeeCC----CCC-CCccCCCCceEEEec
Confidence            111111    123 89999 999888754

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.17  E-value=2.5e-09  Score=91.62  Aligned_cols=180  Identities=8%  Similarity=0.040  Sum_probs=116.9

Q ss_pred             EEeecCCEEE-EecCCCcEEEEeCCCcceee--ecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeeccc
Q 043707          128 SLAASGDLLY-TGSDSKNIRVWKNLKEFSGF--KSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSL  204 (347)
Q Consensus       128 ~l~~~~~~l~-tg~~dg~I~vwd~~~~~~~~--~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~  204 (347)
                      ++..++++++ +...++.|.+|+........  ..+...+.++++.++++.+++.. ++.|.+||......... ..   
T Consensus        30 ~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~-~~---  104 (270)
T 1rwi_B           30 AVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVL-PF---  104 (270)
T ss_dssp             EECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEEC-CC---
T ss_pred             EECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeee-ec---
Confidence            3445677666 54778899999865432222  12335688999999988666655 88999999876532110 00   


Q ss_pred             ccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEE
Q 043707          205 PTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV  284 (347)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~  284 (347)
                                                  .....+..+++++++.++++...++.|.+|+..+.............+..|+
T Consensus       105 ----------------------------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~  156 (270)
T 1rwi_B          105 ----------------------------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVA  156 (270)
T ss_dssp             ----------------------------CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEE
T ss_pred             ----------------------------CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEE
Confidence                                        1235678999999998877777788999998765543322223334578899


Q ss_pred             eCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          285 AGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       285 ~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      +.+++ ++++...++.|.+||......      ......+...+..|+++++|.++++...++
T Consensus       157 ~~~~g~l~v~~~~~~~i~~~~~~~~~~------~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~  213 (270)
T 1rwi_B          157 VDNSGNVYVTDTDNNRVVKLEAESNNQ------VVLPFTDITAPWGIAVDEAGTVYVTEHNTN  213 (270)
T ss_dssp             ECTTCCEEEEEGGGTEEEEECTTTCCE------EECCCSSCCSEEEEEECTTCCEEEEETTTS
T ss_pred             EeCCCCEEEEECCCCEEEEEecCCCce------EeecccCCCCceEEEECCCCCEEEEECCCC
Confidence            99988 555555678999999864321      111122335789999999997777665443

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.14  E-value=1.8e-09  Score=105.95  Aligned_cols=186  Identities=8%  Similarity=-0.020  Sum_probs=119.8

Q ss_pred             EEeecCCEEEEecCCC-----cEEEEeCCCcc-eeeecCCCCeeEEEEeCCCCEEEEEeCCCc----------------E
Q 043707          128 SLAASGDLLYTGSDSK-----NIRVWKNLKEF-SGFKSNSGLVKAIIITGDSNKIFTGHQDGK----------------I  185 (347)
Q Consensus       128 ~l~~~~~~l~tg~~dg-----~I~vwd~~~~~-~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~----------------I  185 (347)
                      +++++|++|+.+..++     .|++||..... .........+..++|+|||+.|+.++.++.                |
T Consensus       131 ~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v  210 (710)
T 2xdw_A          131 AFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKL  210 (710)
T ss_dssp             EECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEE
T ss_pred             EECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEE
Confidence            4446788887665433     89999965432 211111223678999999999999988766                9


Q ss_pred             EEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-----CCcEE
Q 043707          186 RIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-----DKTLK  260 (347)
Q Consensus       186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-----dg~i~  260 (347)
                      ++|++.+++........ .                           ..|...+..+.|+|++++|+..+.     +..|+
T Consensus       211 ~~~~l~t~~~~~~~v~~-~---------------------------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~  262 (710)
T 2xdw_A          211 YYHVLGTDQSEDILCAE-F---------------------------PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLW  262 (710)
T ss_dssp             EEEETTSCGGGCEEEEC-C---------------------------TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEE
T ss_pred             EEEECCCCcccceEEec-c---------------------------CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEE
Confidence            99999776421111000 0                           014455778999999999888765     56899


Q ss_pred             EEeCCC------CE-EEEEEecCCCcEEEEEeCCCC-EEEEEeC----CCcEEEEEcccCCccceeeehhhhhccCC--c
Q 043707          261 VWRISD------CK-CLESINAHDDAINSVVAGFDS-LVFTGSA----DGTVKVWRRELQGKGTKHFLAQVLLKQEN--A  326 (347)
Q Consensus       261 vwdl~~------~~-~~~~~~~h~~~v~~i~~~~~~-~l~s~~~----dg~I~vwd~~~~~~~~~~~~~~~~~~h~~--~  326 (347)
                      +||+.+      ++ ....+..+...+... |++++ .|+..+.    .+.|.+||+......    ....+..|..  .
T Consensus       263 ~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~----~~~~l~~~~~~~~  337 (710)
T 2xdw_A          263 YCDLQQESNGITGILKWVKLIDNFEGEYDY-VTNEGTVFTFKTNRHSPNYRLINIDFTDPEES----KWKVLVPEHEKDV  337 (710)
T ss_dssp             EEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG----GCEEEECCCSSCE
T ss_pred             EEECcccccccCCccceEEeeCCCCcEEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc----cceeccCCCCCCe
Confidence            999976      43 456666676666553 66665 4444333    336999998744210    1223334433  6


Q ss_pred             EEEEEEccCCCEEEEecCCC
Q 043707          327 ITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       327 V~~l~~~p~~~~l~sgs~DG  346 (347)
                      +..++|++++.++++...||
T Consensus       338 ~~~~~~~~~~~lv~~~~~~g  357 (710)
T 2xdw_A          338 LEWVACVRSNFLVLCYLHDV  357 (710)
T ss_dssp             EEEEEEETTTEEEEEEEETT
T ss_pred             EEEEEEEcCCEEEEEEEECC
Confidence            88899998778888887776

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.14  E-value=1.6e-09  Score=106.18  Aligned_cols=191  Identities=9%  Similarity=-0.064  Sum_probs=120.0

Q ss_pred             ccccEEEEe--ecCCEEE-----EecCCCcEEEEeCCCcceeeecCCCCe--eEEEEeCCCCEEEEEeCCCc--------
Q 043707          122 KEGHIYSLA--ASGDLLY-----TGSDSKNIRVWKNLKEFSGFKSNSGLV--KAIIITGDSNKIFTGHQDGK--------  184 (347)
Q Consensus       122 h~~~V~~l~--~~~~~l~-----tg~~dg~I~vwd~~~~~~~~~~h~~~V--~~l~~sp~~~~l~s~~~Dg~--------  184 (347)
                      |+..+.++.  ++|++|+     .|+.+..|++||+.........+...+  ..++|+|||+.|+.++.|..        
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~  198 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDER  198 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGG
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccC
Confidence            333455444  5788888     555667899999654322101122222  68999999999999998876        


Q ss_pred             -----EEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCC--
Q 043707          185 -----IRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDK--  257 (347)
Q Consensus       185 -----I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg--  257 (347)
                           |++|++.++......... .                           ..+...+..+.|+|+|++|+..+.++  
T Consensus       199 ~~~~~v~~~~l~t~~~~~~lv~~-~---------------------------~~~~~~~~~~~~SpDG~~l~~~~~~~~~  250 (695)
T 2bkl_A          199 PGYTTIRYHTLGTEPSKDTVVHE-R---------------------------TGDPTTFLQSDLSRDGKYLFVYILRGWS  250 (695)
T ss_dssp             GGGCEEEEEETTSCGGGCEEEEC-C---------------------------CCCTTCEEEEEECTTSCCEEEEEEETTT
T ss_pred             CCCCEEEEEECCCCchhceEEEe-c---------------------------CCCCEEEEEEEECCCCCEEEEEEeCCCC
Confidence                 999999876521111000 0                           02446788999999999888877666  


Q ss_pred             --cEEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEEEEEe---CCCcEEEEEcccCCccceeeehhhhhcc--CCcEEEE
Q 043707          258 --TLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGS---ADGTVKVWRRELQGKGTKHFLAQVLLKQ--ENAITAL  330 (347)
Q Consensus       258 --~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~---~dg~I~vwd~~~~~~~~~~~~~~~~~~h--~~~V~~l  330 (347)
                        .|.+||..+++ ...+..+...+....++++++++.+.   .++.|.+||+......    ....+..+  ...|..+
T Consensus       251 ~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~----~~~~l~~~~~~~~l~~~  325 (695)
T 2bkl_A          251 ENDVYWKRPGEKD-FRLLVKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARA----SWKEIVPEDSSASLLSV  325 (695)
T ss_dssp             EEEEEEECTTCSS-CEEEEECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGG----GCEEEECCCSSCEEEEE
T ss_pred             ceEEEEEcCCCCc-eEEeecCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCcc----CCeEEecCCCCCeEEEE
Confidence              67777765554 34455555566666664444333333   2588999998654310    01222222  4468889


Q ss_pred             EEccCCCEEEEecCCC
Q 043707          331 AVNQESAVVYCGSSDG  346 (347)
Q Consensus       331 ~~~p~~~~l~sgs~DG  346 (347)
                      +|+ ++.++++...||
T Consensus       326 ~~~-~~~lv~~~~~dg  340 (695)
T 2bkl_A          326 SIV-GGHLSLEYLKDA  340 (695)
T ss_dssp             EEE-TTEEEEEEEETT
T ss_pred             EEE-CCEEEEEEEECC
Confidence            998 667788877766

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.13  E-value=1.2e-08  Score=89.32  Aligned_cols=206  Identities=8%  Similarity=0.017  Sum_probs=119.5

Q ss_pred             ecCCEEEE-------ecCCCcEEEEeCC-Ccceeeec-----CCCCeeEEEEeCC-CCEEEEEeCCCcEEEEecCCCCCc
Q 043707          131 ASGDLLYT-------GSDSKNIRVWKNL-KEFSGFKS-----NSGLVKAIIITGD-SNKIFTGHQDGKIRIWKVSRKNPS  196 (347)
Q Consensus       131 ~~~~~l~t-------g~~dg~I~vwd~~-~~~~~~~~-----h~~~V~~l~~sp~-~~~l~s~~~Dg~I~vwd~~~~~~~  196 (347)
                      .++.++++       +..++.|.+|+.. .....+..     +...+.+++++++ ++.++ +...+.|.+||.. ++..
T Consensus        27 ~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~~~~l~~~d~~-g~~~  104 (314)
T 1pjx_A           27 KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADMRLGLLVVQTD-GTFE  104 (314)
T ss_dssp             TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-EETTTEEEEEETT-SCEE
T ss_pred             CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-EECCCCEEEEeCC-CCEE
Confidence            45667777       5778899999843 33333332     4467899999998 65444 4444578899987 5432


Q ss_pred             ee-eeec-ccc-ccc---------ceEEeccCC---------------CeEEEEeecc-eeeeeecCCCeeEEEEc----
Q 043707          197 VH-KRVG-SLP-TFK---------DYVKSSVNP---------------KNYVEVRRNR-NVLKIRHYDAVSCLSLN----  244 (347)
Q Consensus       197 ~~-~~~~-~~~-~~~---------~~~~~~~~~---------------~~~~~~~~~~-~~~~~~h~~~V~~l~~~----  244 (347)
                      .. .... ..+ ...         .++......               ..++.+.... ......+......++|+    
T Consensus       105 ~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~d  184 (314)
T 1pjx_A          105 EIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMND  184 (314)
T ss_dssp             ECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEEEEEEEECTT
T ss_pred             EEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCEEEeccCCCCcceEEEecccC
Confidence            11 1000 000 000         111111111               1122221111 11122233456788999    


Q ss_pred             CCCCEEEEE-eCCCcEEEEeCC-CCE-----EEEEEecCC-CcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceee
Q 043707          245 AEQGLLYSG-SWDKTLKVWRIS-DCK-----CLESINAHD-DAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHF  315 (347)
Q Consensus       245 ~~~~~l~s~-s~dg~i~vwdl~-~~~-----~~~~~~~h~-~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~  315 (347)
                      ++++.|+.+ ..++.|.+||+. +++     ....+..+. ..+..+++.+++ ++++...++.|.+||.+++.      
T Consensus       185 ~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~------  258 (314)
T 1pjx_A          185 GRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ------  258 (314)
T ss_dssp             SCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS------
T ss_pred             CCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCc------
Confidence            998766555 567899999986 454     223333343 567889999988 44455578899999986332      


Q ss_pred             ehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707          316 LAQVLLKQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       316 ~~~~~~~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      ....+..+...+.+++|+++++.|+.++.
T Consensus       259 ~~~~~~~~~~~~~~i~~~~dg~~l~v~~~  287 (314)
T 1pjx_A          259 PKMRIRCPFEKPSNLHFKPQTKTIFVTEH  287 (314)
T ss_dssp             CSEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred             EeEEEeCCCCCceeEEECCCCCEEEEEeC
Confidence            22223344568999999999996665543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.13  E-value=1.6e-08  Score=89.69  Aligned_cols=210  Identities=11%  Similarity=-0.032  Sum_probs=129.0

Q ss_pred             EEEEeecCC-EEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeec
Q 043707          126 IYSLAASGD-LLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVG  202 (347)
Q Consensus       126 V~~l~~~~~-~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~  202 (347)
                      ...+.++++ ++++...++.|.+||..  +.+..+. .......++++++++.+++...++.|.+||..+++......+.
T Consensus        46 ~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g  124 (328)
T 3dsm_A           46 AQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECP  124 (328)
T ss_dssp             EEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECT
T ss_pred             ceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcC
Confidence            345555555 55555667899999965  3344453 3467889999998844444448999999999887654443333


Q ss_pred             c------cccc-----cceEEeccC-CCeEEEEe--ecceeeeeecCCCeeEEEEcCCCCEEEEEeCC----------Cc
Q 043707          203 S------LPTF-----KDYVKSSVN-PKNYVEVR--RNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWD----------KT  258 (347)
Q Consensus       203 ~------~~~~-----~~~~~~~~~-~~~~~~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d----------g~  258 (347)
                      .      .|..     ..++..... ...+..+.  .......+........+.+++++++++++..+          +.
T Consensus       125 ~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~  204 (328)
T 3dsm_A          125 DMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPS  204 (328)
T ss_dssp             TCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCE
T ss_pred             CccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCce
Confidence            3      2221     112222221 22222221  12222223334456788999999877776554          78


Q ss_pred             EEEEeCCCCEEEEEEecC-CCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCC
Q 043707          259 LKVWRISDCKCLESINAH-DDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQES  336 (347)
Q Consensus       259 i~vwdl~~~~~~~~~~~h-~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~  336 (347)
                      |.++|..+++.+..+... ......++++|++ .|+++..  .|.+||..+....    ....+.........++++|++
T Consensus       205 v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~----~~~~~~~~~~~p~gi~vdp~~  278 (328)
T 3dsm_A          205 LYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVP----VRPFLEFRDTKYYGLTVNPNN  278 (328)
T ss_dssp             EEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCC----SSCSBCCCSSCEEEEEECTTT
T ss_pred             EEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCcee----eeeeecCCCCceEEEEEcCCC
Confidence            999999999988777643 2367899999976 6666544  8999998754320    011111124578999999954


Q ss_pred             -CEEEEe
Q 043707          337 -AVVYCG  342 (347)
Q Consensus       337 -~~l~sg  342 (347)
                       .+.++.
T Consensus       279 g~lyva~  285 (328)
T 3dsm_A          279 GEVYVAD  285 (328)
T ss_dssp             CCEEEEE
T ss_pred             CeEEEEc
Confidence             555544

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.13  E-value=1e-08  Score=100.62  Aligned_cols=177  Identities=7%  Similarity=0.030  Sum_probs=115.1

Q ss_pred             EEeecCCEEEEecCCCc----------------EEEEeCCCcc----eeeec--CCCCeeEEEEeCCCCEEEEEeC----
Q 043707          128 SLAASGDLLYTGSDSKN----------------IRVWKNLKEF----SGFKS--NSGLVKAIIITGDSNKIFTGHQ----  181 (347)
Q Consensus       128 ~l~~~~~~l~tg~~dg~----------------I~vwd~~~~~----~~~~~--h~~~V~~l~~sp~~~~l~s~~~----  181 (347)
                      ++.++|+.|+.+..++.                |++|+.....    ..+..  |...+..+.|+|+|++|+.++.    
T Consensus       177 ~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~  256 (710)
T 2xdw_A          177 AWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCD  256 (710)
T ss_dssp             EECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSS
T ss_pred             EEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCC
Confidence            34456888888877765                9999976432    22222  4556889999999999888765    


Q ss_pred             -CCcEEEEecCC------CCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEe
Q 043707          182 -DGKIRIWKVSR------KNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGS  254 (347)
Q Consensus       182 -Dg~I~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s  254 (347)
                       +..|++||+.+      +.......                               ..+...+.. .|++++..|+..+
T Consensus       257 ~~~~l~~~d~~~~~~~~~~~~~~~~l-------------------------------~~~~~~~~~-~~s~dg~~l~~~s  304 (710)
T 2xdw_A          257 PVNRLWYCDLQQESNGITGILKWVKL-------------------------------IDNFEGEYD-YVTNEGTVFTFKT  304 (710)
T ss_dssp             SCCEEEEEEGGGSSSSSCSSCCCEEE-------------------------------ECSSSSCEE-EEEEETTEEEEEE
T ss_pred             CccEEEEEECcccccccCCccceEEe-------------------------------eCCCCcEEE-EEeccCCEEEEEE
Confidence             56899999976      32111111                               123444443 4788888777666


Q ss_pred             CC----CcEEEEeCCCCE--EEEEEecCCC--cEEEEEeCCCC-EEEEEeCCCcEEE--EEcccCCccceeeehhhhhcc
Q 043707          255 WD----KTLKVWRISDCK--CLESINAHDD--AINSVVAGFDS-LVFTGSADGTVKV--WRRELQGKGTKHFLAQVLLKQ  323 (347)
Q Consensus       255 ~d----g~i~vwdl~~~~--~~~~~~~h~~--~v~~i~~~~~~-~l~s~~~dg~I~v--wd~~~~~~~~~~~~~~~~~~h  323 (347)
                      .+    +.|.+||+.+++  ....+..|..  .+..+.|.+++ ++++...|+..+|  |++..++      ....+..+
T Consensus       305 ~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~------~~~~l~~~  378 (710)
T 2xdw_A          305 NRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA------LLKIFPLE  378 (710)
T ss_dssp             CTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC------EEEEECCC
T ss_pred             CCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC------EEEecCCC
Confidence            53    359999998764  2344545544  68888888666 7777888885555  5553222      22334455


Q ss_pred             CCcEEEEEEccCCCEEEEe
Q 043707          324 ENAITALAVNQESAVVYCG  342 (347)
Q Consensus       324 ~~~V~~l~~~p~~~~l~sg  342 (347)
                      ...|..++++|++..|+..
T Consensus       379 ~~~v~~~~~s~d~~~l~~~  397 (710)
T 2xdw_A          379 VGSVVGYSGQKKDTEIFYQ  397 (710)
T ss_dssp             SSEEEEEECCTTCSEEEEE
T ss_pred             CceEEEEecCCCCCEEEEE
Confidence            7788999999998766543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.13  E-value=1.7e-09  Score=95.93  Aligned_cols=153  Identities=12%  Similarity=0.119  Sum_probs=108.0

Q ss_pred             cEEEEee---cCCEEEEec-CCCcEEEEeCCCc-ceeeec----------CCCCeeEEEEeCC-CCEEEEEeCCCcEEEE
Q 043707          125 HIYSLAA---SGDLLYTGS-DSKNIRVWKNLKE-FSGFKS----------NSGLVKAIIITGD-SNKIFTGHQDGKIRIW  188 (347)
Q Consensus       125 ~V~~l~~---~~~~l~tg~-~dg~I~vwd~~~~-~~~~~~----------h~~~V~~l~~sp~-~~~l~s~~~Dg~I~vw  188 (347)
                      ....+++   ++.++++.+ .++.|++|+.... +..+..          +-.....|+++|+ +..+++...++.|++|
T Consensus       144 ~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~  223 (329)
T 3fvz_A          144 QPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCF  223 (329)
T ss_dssp             SEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEE
Confidence            4555554   456777775 6899999995433 333321          2234889999998 7777777788999999


Q ss_pred             ecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC------CCCEEEEEeCCCcEEEE
Q 043707          189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA------EQGLLYSGSWDKTLKVW  262 (347)
Q Consensus       189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~------~~~~l~s~s~dg~i~vw  262 (347)
                      |..+++........                              .+...+..++++|      ++..+++...+.+|++|
T Consensus       224 ~~~~G~~~~~~~~~------------------------------~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~  273 (329)
T 3fvz_A          224 KTDTKEFVREIKHA------------------------------SFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVM  273 (329)
T ss_dssp             ETTTCCEEEEECCT------------------------------TTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEE
T ss_pred             ECCCCcEEEEEecc------------------------------ccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEE
Confidence            99866533222111                              2456677888888      33333333345589999


Q ss_pred             eCCCCEEEEEEe---cCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEccc
Q 043707          263 RISDCKCLESIN---AHDDAINSVVAGFDS-LVFTGSADGTVKVWRREL  307 (347)
Q Consensus       263 dl~~~~~~~~~~---~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~  307 (347)
                      |+.+++.+..+.   .+...+..|++++++ ++++...++.|++|++..
T Consensus       274 ~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          274 NFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             ETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             EcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            999999998883   667779999999998 666777899999999863

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.13  E-value=2.8e-08  Score=86.08  Aligned_cols=182  Identities=10%  Similarity=0.074  Sum_probs=124.2

Q ss_pred             ccEEEEee--cCCEEEEecCCCcEEEEeCCCcceeee--cCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceee
Q 043707          124 GHIYSLAA--SGDLLYTGSDSKNIRVWKNLKEFSGFK--SNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHK  199 (347)
Q Consensus       124 ~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~~~~~~~--~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~  199 (347)
                      ..+.++..  ++.++++...++.|..|+.......+.  .....+.++++.++++.+++...++.|.+||. +++.... 
T Consensus        57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~-  134 (299)
T 2z2n_A           57 AKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREY-  134 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEE-
T ss_pred             CceeeEEECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEe-
Confidence            45666665  567777777788999998664444333  23457899999999988887777889999998 4432111 


Q ss_pred             eecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEE-EecCCC
Q 043707          200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES-INAHDD  278 (347)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~-~~~h~~  278 (347)
                      ..                              ......+..+++.+++.++++...++.|.+||. +++.... +..+..
T Consensus       135 ~~------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~  183 (299)
T 2z2n_A          135 EL------------------------------PNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPAS  183 (299)
T ss_dssp             EC------------------------------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTC
T ss_pred             cC------------------------------CCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCC
Confidence            00                              013456789999999988877777789999998 6655432 333455


Q ss_pred             cEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707          279 AINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       279 ~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      .+..+++.+++ ++++...++.|.+||. .+..  .   ...+..+...+.+|+++++|++.++...
T Consensus       184 ~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~--~---~~~~~~~~~~~~~i~~~~~g~l~v~~~~  244 (299)
T 2z2n_A          184 GPVGITKGNDDALWFVEIIGNKIGRITT-SGEI--T---EFKIPTPNARPHAITAGAGIDLWFTEWG  244 (299)
T ss_dssp             CEEEEEECTTSSEEEEETTTTEEEEECT-TCCE--E---EEECSSTTCCEEEEEECSTTCEEEEETT
T ss_pred             cceeEEECCCCCEEEEccCCceEEEECC-CCcE--E---EEECCCCCCCceeEEECCCCCEEEeccC
Confidence            68899999988 4444456789999998 3321  1   1112234567899999999987766533

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.12  E-value=3.4e-09  Score=95.80  Aligned_cols=163  Identities=10%  Similarity=0.007  Sum_probs=104.5

Q ss_pred             CCCcEEEEeCCC-cceeeecCCCCeeEEEEeC-CCCEEEEEeCC------CcEEEEecCCCCCceeeeecccccccceEE
Q 043707          141 DSKNIRVWKNLK-EFSGFKSNSGLVKAIIITG-DSNKIFTGHQD------GKIRIWKVSRKNPSVHKRVGSLPTFKDYVK  212 (347)
Q Consensus       141 ~dg~I~vwd~~~-~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~D------g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~  212 (347)
                      .+..|++||... ....+..+...+..+.|+| +++.|+.++.+      ..|.+||+..++......            
T Consensus       166 ~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~------------  233 (396)
T 3c5m_A          166 PTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE------------  233 (396)
T ss_dssp             CCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC------------
T ss_pred             CcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec------------
Confidence            456788898653 2334445667899999999 78777776644      357788876543211100            


Q ss_pred             eccCCCeEEEEeecceeeeeec-CCCeeEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCEEEEEEecCCCcEEEEEeC
Q 043707          213 SSVNPKNYVEVRRNRNVLKIRH-YDAVSCLSLNAEQGLLYSGSWD-----KTLKVWRISDCKCLESINAHDDAINSVVAG  286 (347)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~l~s~s~d-----g~i~vwdl~~~~~~~~~~~h~~~v~~i~~~  286 (347)
                                          .. ...+..++|+|+++.|+..+.+     +.|++||+.+++...... ... .. +.|+
T Consensus       234 --------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s  290 (396)
T 3c5m_A          234 --------------------HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMS  290 (396)
T ss_dssp             --------------------CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEE
T ss_pred             --------------------cCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCcc
Confidence                                01 2247788999999977766543     449999998886543322 122 33 8899


Q ss_pred             C-CC-EEEEEe----------------CCCcEEEEEcccCCccceeeehhhhhccCC-----------cEEEEEEccCCC
Q 043707          287 F-DS-LVFTGS----------------ADGTVKVWRRELQGKGTKHFLAQVLLKQEN-----------AITALAVNQESA  337 (347)
Q Consensus       287 ~-~~-~l~s~~----------------~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~-----------~V~~l~~~p~~~  337 (347)
                      | ++ +++.++                .+..|++||+..+..       ..+..+..           .+..++|+|+|+
T Consensus       291 ~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-------~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~  363 (396)
T 3c5m_A          291 NFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-------QKLCKHSTSWDVLDGDRQITHPHPSFTPNDD  363 (396)
T ss_dssp             CSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC-------CEEEECCCCCCCBTTBSSTTCCCCEECTTSS
T ss_pred             CCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce-------EEccCCCCccccccccccCCCCCceEccCCC
Confidence            8 88 555543                347899999874321       22333332           256789999999


Q ss_pred             EEEEecCC
Q 043707          338 VVYCGSSD  345 (347)
Q Consensus       338 ~l~sgs~D  345 (347)
                      .|+.++.+
T Consensus       364 ~l~~~s~~  371 (396)
T 3c5m_A          364 GVLFTSDF  371 (396)
T ss_dssp             EEEEEECT
T ss_pred             eEEEEecC
Confidence            88877653

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.10  E-value=6.7e-08  Score=83.61  Aligned_cols=184  Identities=11%  Similarity=0.110  Sum_probs=124.2

Q ss_pred             ccccEEEEee--cCCEEEEecCCCcEEEEeCCCcceeee--cCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCce
Q 043707          122 KEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKEFSGFK--SNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSV  197 (347)
Q Consensus       122 h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~~~~~~~--~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~  197 (347)
                      +...+.++..  +|+++++...++.|.+||.......+.  .+...+.++++.+++..+++...++.|..||.. ++. .
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~   90 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-K   90 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-E
T ss_pred             cCCCccceEECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-E
Confidence            3456777765  466777666678999999764444333  245679999999999888877778899999875 221 1


Q ss_pred             eeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEE-EecC
Q 043707          198 HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES-INAH  276 (347)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~-~~~h  276 (347)
                      ....   +                           .....+..+++.+++.++++...++.|.+||. +++.... +..+
T Consensus        91 ~~~~---~---------------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~  139 (299)
T 2z2n_A           91 EYTL---P---------------------------NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNK  139 (299)
T ss_dssp             EEEC---S---------------------------STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSST
T ss_pred             EEeC---C---------------------------CcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCC
Confidence            1100   0                           13456888999999988888777889999998 5544322 2334


Q ss_pred             CCcEEEEEeCCCCEE-EEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707          277 DDAINSVVAGFDSLV-FTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       277 ~~~v~~i~~~~~~~l-~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      ...+..+++.+++.+ ++...++.|..||. .+..  .   ...+..+...+..+++++++.+.++...
T Consensus       140 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~--~---~~~~~~~~~~~~~i~~~~~g~l~v~~~~  202 (299)
T 2z2n_A          140 GSYPSFITLGSDNALWFTENQNNAIGRITE-SGDI--T---EFKIPTPASGPVGITKGNDDALWFVEII  202 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE--E---EEECSSTTCCEEEEEECTTSSEEEEETT
T ss_pred             CCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcE--E---EeeCCCCCCcceeEEECCCCCEEEEccC
Confidence            566899999998844 44555789999998 3221  1   1112233456889999999987766543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.09  E-value=1.1e-07  Score=84.28  Aligned_cols=206  Identities=8%  Similarity=0.079  Sum_probs=121.0

Q ss_pred             EEeec-CCEEEEecCCCcEEEEeCCCc-ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeec---
Q 043707          128 SLAAS-GDLLYTGSDSKNIRVWKNLKE-FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVG---  202 (347)
Q Consensus       128 ~l~~~-~~~l~tg~~dg~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~---  202 (347)
                      .+.++ +.+++++..++.|.+||.... ...+ .....+.+++|+++++++++. .+ .|.+||..+++........   
T Consensus        55 ~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~  131 (326)
T 2ghs_A           55 TFDPASGTAWWFNILERELHELHLASGRKTVH-ALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDL  131 (326)
T ss_dssp             EEETTTTEEEEEEGGGTEEEEEETTTTEEEEE-ECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTC
T ss_pred             eEeCCCCEEEEEECCCCEEEEEECCCCcEEEE-ECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCC
Confidence            34444 446777777889999996543 2323 235679999999999766654 44 4999998777532221110   


Q ss_pred             ---------ccccccceEEeccC------CCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEE-eCCCcEEEEeCC-
Q 043707          203 ---------SLPTFKDYVKSSVN------PKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSG-SWDKTLKVWRIS-  265 (347)
Q Consensus       203 ---------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~dg~i~vwdl~-  265 (347)
                               ..+... ++.....      ...++.+..........+......++|+++++.|+.+ +.++.|.+||+. 
T Consensus       132 ~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~  210 (326)
T 2ghs_A          132 PGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDA  210 (326)
T ss_dssp             TTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCT
T ss_pred             CCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEeCCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEccc
Confidence                     011111 1111110      1122222211111122233456789999999876555 457899999986 


Q ss_pred             -CC-E-----EEEEEecCCCcEEEEEeCCCCEEE-EEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEc-cCC
Q 043707          266 -DC-K-----CLESINAHDDAINSVVAGFDSLVF-TGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVN-QES  336 (347)
Q Consensus       266 -~~-~-----~~~~~~~h~~~v~~i~~~~~~~l~-s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~-p~~  336 (347)
                       ++ +     .+..+......+..+++.+++.|. +...++.|.+||..  ++     ....+..+...+++++|. +++
T Consensus       211 ~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~--g~-----~~~~i~~~~~~~~~~af~g~d~  283 (326)
T 2ghs_A          211 RTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD--GN-----HIARYEVPGKQTTCPAFIGPDA  283 (326)
T ss_dssp             TTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT--CC-----EEEEEECSCSBEEEEEEESTTS
T ss_pred             ccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC--CC-----EEEEEECCCCCcEEEEEecCCC
Confidence             55 2     233333344567889999888444 44456889999874  22     223333455679999998 888


Q ss_pred             CEEEEecC
Q 043707          337 AVVYCGSS  344 (347)
Q Consensus       337 ~~l~sgs~  344 (347)
                      +.|+.++.
T Consensus       284 ~~L~vt~~  291 (326)
T 2ghs_A          284 SRLLVTSA  291 (326)
T ss_dssp             CEEEEEEB
T ss_pred             CEEEEEec
Confidence            77755543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.06  E-value=3.6e-08  Score=86.36  Aligned_cols=218  Identities=8%  Similarity=0.092  Sum_probs=131.1

Q ss_pred             eEeeeeccccEEEEe--ecCC-EEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCC
Q 043707          116 IGSIVRKEGHIYSLA--ASGD-LLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSR  192 (347)
Q Consensus       116 i~~l~~h~~~V~~l~--~~~~-~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~  192 (347)
                      +..+...........  ++++ +++++..++.|..|+.......+..+...+..++++++|+++++...++.|.+|+.+ 
T Consensus        37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-  115 (305)
T 3dr2_A           37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-  115 (305)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-
Confidence            333433333344444  4666 778888889999999765566677777889999999999876666666889999976 


Q ss_pred             CCCceeee-ec-----------ccccccceEEe----cc-------------CCCeEEEEee--cceeeeeecCCCeeEE
Q 043707          193 KNPSVHKR-VG-----------SLPTFKDYVKS----SV-------------NPKNYVEVRR--NRNVLKIRHYDAVSCL  241 (347)
Q Consensus       193 ~~~~~~~~-~~-----------~~~~~~~~~~~----~~-------------~~~~~~~~~~--~~~~~~~~h~~~V~~l  241 (347)
                      ++...... ..           ..+.. .++..    ..             ....++.+..  ....... .......+
T Consensus       116 g~~~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl  193 (305)
T 3dr2_A          116 GQAHLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGL  193 (305)
T ss_dssp             SCEEEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEE
T ss_pred             CCEEEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcce
Confidence            43211110 00           00111 11111    00             0112222221  1111122 33456789


Q ss_pred             EEcCCCCEEEEEeCC------CcEEEEeCCCCEEEE---EE-ecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCcc
Q 043707          242 SLNAEQGLLYSGSWD------KTLKVWRISDCKCLE---SI-NAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKG  311 (347)
Q Consensus       242 ~~~~~~~~l~s~s~d------g~i~vwdl~~~~~~~---~~-~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~  311 (347)
                      +|+|+++.|+.+...      +.|.+|++.... +.   .+ .........+++.++|.|.++..+ .|.+|+..  ++ 
T Consensus       194 ~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~-gv~~~~~~--g~-  268 (305)
T 3dr2_A          194 AFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWSSSGT-GVCVFDSD--GQ-  268 (305)
T ss_dssp             EECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEECCSS-EEEEECTT--SC-
T ss_pred             EEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEEecCC-cEEEECCC--CC-
Confidence            999999988887665      689999987654 22   11 112334556888888877666655 48999874  22 


Q ss_pred             ceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          312 TKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       312 ~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                          ....+..+. .+..++|.++++.|+.++.++
T Consensus       269 ----~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          269 ----LLGHIPTPG-TASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             ----EEEEEECSS-CCCEEEECTTSCEEEEEETTE
T ss_pred             ----EEEEEECCC-ceeEEEEeCCCCEEEEEcCCe
Confidence                222222233 588999999998888877665

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.04  E-value=6.3e-09  Score=101.86  Aligned_cols=175  Identities=13%  Similarity=0.004  Sum_probs=112.9

Q ss_pred             EEeecCCEEEEecCCCc-------------EEEEeCCCcc----ee--eecCCCCeeEEEEeCCCCEEEEEeCCC----c
Q 043707          128 SLAASGDLLYTGSDSKN-------------IRVWKNLKEF----SG--FKSNSGLVKAIIITGDSNKIFTGHQDG----K  184 (347)
Q Consensus       128 ~l~~~~~~l~tg~~dg~-------------I~vwd~~~~~----~~--~~~h~~~V~~l~~sp~~~~l~s~~~Dg----~  184 (347)
                      ++.++|+.|+.++.|..             |++|+.....    ..  ...|...+..+.|+|+|++|+.++.++    .
T Consensus       174 ~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~  253 (695)
T 2bkl_A          174 KWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSEND  253 (695)
T ss_dssp             EECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEE
T ss_pred             EEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceE
Confidence            44557888888888766             9999976432    22  223556789999999999998887766    5


Q ss_pred             EEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC---CCcEEE
Q 043707          185 IRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW---DKTLKV  261 (347)
Q Consensus       185 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---dg~i~v  261 (347)
                      |++|+..+++....                                 ..+...+....+ +++.+++....   ++.|.+
T Consensus       254 l~~~~~~~~~~~~l---------------------------------~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~  299 (695)
T 2bkl_A          254 VYWKRPGEKDFRLL---------------------------------VKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFE  299 (695)
T ss_dssp             EEEECTTCSSCEEE---------------------------------EECSSCCEEEEE-ETTEEEEEECTTCTTCEEEE
T ss_pred             EEEEcCCCCceEEe---------------------------------ecCCCceEEEEe-cCCcEEEEECCCCCCCEEEE
Confidence            66665543321111                                 124444555556 45555444442   578999


Q ss_pred             EeCCCCEE--EEEEecC--CCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhcc-CCcEEEEEEccCC
Q 043707          262 WRISDCKC--LESINAH--DDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQ-ENAITALAVNQES  336 (347)
Q Consensus       262 wdl~~~~~--~~~~~~h--~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h-~~~V~~l~~~p~~  336 (347)
                      ||+.+++.  ...+..+  ...+..+.+..+.++++...|+..+||.+...+.     ....+..+ ...|..++++|++
T Consensus       300 ~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~-----~~~~l~~~~~~~v~~~~~s~d~  374 (695)
T 2bkl_A          300 VDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGK-----PVRTVQLPGVGAASNLMGLEDL  374 (695)
T ss_dssp             EBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCC-----EEEECCCSSSSEECCCBSCTTC
T ss_pred             EeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCC-----eeEEecCCCCeEEEEeecCCCC
Confidence            99987653  2333333  4567888888444888888999999997764332     22223333 5678888999988


Q ss_pred             CEEEE
Q 043707          337 AVVYC  341 (347)
Q Consensus       337 ~~l~s  341 (347)
                      +.|+.
T Consensus       375 ~~l~~  379 (695)
T 2bkl_A          375 DDAYY  379 (695)
T ss_dssp             SEEEE
T ss_pred             CEEEE
Confidence            76663

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.03  E-value=6.5e-09  Score=93.54  Aligned_cols=137  Identities=10%  Similarity=0.137  Sum_probs=97.3

Q ss_pred             CCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEe----------CCCcEEEEecCCCCCceeeeeccccccc
Q 043707          141 DSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGH----------QDGKIRIWKVSRKNPSVHKRVGSLPTFK  208 (347)
Q Consensus       141 ~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~----------~Dg~I~vwd~~~~~~~~~~~~~~~~~~~  208 (347)
                      .|+.|++||..  +....+..+..+  .++|+|++++++++.          .++.|.+||..+.+......+...    
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~----  102 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPK----  102 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTT----
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcc----
Confidence            47799999954  334455555444  899999999999986          367899999987654333222100    


Q ss_pred             ceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC--CCcEEEEeCCCCEEEEE-EecCCCcEEEEEe
Q 043707          209 DYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW--DKTLKVWRISDCKCLES-INAHDDAINSVVA  285 (347)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--dg~i~vwdl~~~~~~~~-~~~h~~~v~~i~~  285 (347)
                                            ...+......++++|++++|+++..  +++|.+||+.+++.+.. +... . ...+.+
T Consensus       103 ----------------------~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~-~~~v~~  158 (361)
T 2oiz_A          103 ----------------------RVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-G-CWSVIP  158 (361)
T ss_dssp             ----------------------BCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-T-EEEEEE
T ss_pred             ----------------------ccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-C-cceeEE
Confidence                                  0012345677999999999999874  68999999999998887 5532 2 223456


Q ss_pred             CCCC--EEEEEeCCCcEEEEEccc
Q 043707          286 GFDS--LVFTGSADGTVKVWRREL  307 (347)
Q Consensus       286 ~~~~--~l~s~~~dg~I~vwd~~~  307 (347)
                      .|++  .+++.+.||.+.+|+...
T Consensus       159 ~p~~~~~~~~~~~dg~~~~v~~~~  182 (361)
T 2oiz_A          159 QPNRPRSFMTICGDGGLLTINLGE  182 (361)
T ss_dssp             CTTSSSEEEEEETTSSEEEEEECT
T ss_pred             cCCCCeeEEEECCCCcEEEEEECC
Confidence            6765  778888999999999864

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.03  E-value=5e-08  Score=84.32  Aligned_cols=195  Identities=10%  Similarity=0.013  Sum_probs=127.5

Q ss_pred             eeEeeeecc-ccEE--EEeecCCEEEEecCCCcEEEEeC-CCcceeeecC-CCCeeEEEEeCCCCEEEEEeC-CCcEEEE
Q 043707          115 LIGSIVRKE-GHIY--SLAASGDLLYTGSDSKNIRVWKN-LKEFSGFKSN-SGLVKAIIITGDSNKIFTGHQ-DGKIRIW  188 (347)
Q Consensus       115 ~i~~l~~h~-~~V~--~l~~~~~~l~tg~~dg~I~vwd~-~~~~~~~~~h-~~~V~~l~~sp~~~~l~s~~~-Dg~I~vw  188 (347)
                      .+..+..+. ..+.  .+.++|++|++  .++.|+.||. .+.+..+..+ ...+.++.+.++|+.+++.+. ++.|..+
T Consensus        27 ~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~v  104 (276)
T 3no2_A           27 IVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITRDGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEV  104 (276)
T ss_dssp             EEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECTTSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEE
T ss_pred             EEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECCCCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEE
Confidence            344454443 2333  44567888883  4678999996 3445555554 347889999999999999887 7777777


Q ss_pred             ecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCE
Q 043707          189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK  268 (347)
Q Consensus       189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~  268 (347)
                      |. +++..........                         . ..+......+++.+++++|++...++.|.+||.. ++
T Consensus       105 d~-~Gk~l~~~~~~~~-------------------------~-~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~  156 (276)
T 3no2_A          105 NM-KGEVLSKTEFETG-------------------------I-ERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ  156 (276)
T ss_dssp             CT-TSCEEEEEEECCS-------------------------C-SSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             eC-CCCEEEEEeccCC-------------------------C-CcccccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence            75 3432222211100                         0 0122234456788999999999999999999987 99


Q ss_pred             EEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehh-hhhc-cCCcEEEEEEccCCCEEEEe
Q 043707          269 CLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQ-VLLK-QENAITALAVNQESAVVYCG  342 (347)
Q Consensus       269 ~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~-~~~~-h~~~V~~l~~~p~~~~l~sg  342 (347)
                      .+.++.... .+..+...+++ +++++..++.|..+|..+++.  ...... .+.+ ....+..++..++|..+++.
T Consensus       157 ~~w~~~~~~-~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~--~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          157 LLNSVKLSG-TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI--VRRVNANDIEGVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             EEEEEECSS-CCCEEEECTTSCEEEECBTTSEEEEECTTTCCE--EEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred             EEEEEECCC-CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE--EEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence            999887653 45566677776 777777788999999875543  111111 1111 22357889999999888876

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.00  E-value=1.5e-08  Score=88.23  Aligned_cols=150  Identities=13%  Similarity=0.102  Sum_probs=103.1

Q ss_pred             ceeeecCCCCeeEEEEeCCCC-EEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeee
Q 043707          154 FSGFKSNSGLVKAIIITGDSN-KIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKI  232 (347)
Q Consensus       154 ~~~~~~h~~~V~~l~~sp~~~-~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (347)
                      +..+..+.....+++|+|+++ .++++..++.|..||..++ . ....                                
T Consensus        20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~~~~--------------------------------   65 (296)
T 3e5z_A           20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-SPEM--------------------------------   65 (296)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-EEEE--------------------------------
T ss_pred             EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-EEEE--------------------------------
Confidence            445555667789999999998 7888888999999998865 1 1111                                


Q ss_pred             ecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecC----CCcEEEEEeCCCC-EEEE----Ee--------
Q 043707          233 RHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH----DDAINSVVAGFDS-LVFT----GS--------  295 (347)
Q Consensus       233 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h----~~~v~~i~~~~~~-~l~s----~~--------  295 (347)
                      .+...+.++++++++.++++...++.|.+||..+++........    ...+..+++.|+| ++++    |.        
T Consensus        66 ~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~  145 (296)
T 3e5z_A           66 HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYG  145 (296)
T ss_dssp             SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSC
T ss_pred             CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccccc
Confidence            24567889999999998877777789999999888754433221    2345679999998 4444    32        


Q ss_pred             -----CCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707          296 -----ADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       296 -----~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                           ..+.|..++..  +.      ...+..+...+..++|+|+++.|++.+.+
T Consensus       146 ~~~~~~~~~l~~~~~~--g~------~~~~~~~~~~~~gi~~s~dg~~lv~~~~~  192 (296)
T 3e5z_A          146 GEMELPGRWVFRLAPD--GT------LSAPIRDRVKPNGLAFLPSGNLLVSDTGD  192 (296)
T ss_dssp             CCCCSSSCEEEEECTT--SC------EEEEECCCSSEEEEEECTTSCEEEEETTT
T ss_pred             ccccCCCcEEEEECCC--CC------EEEeecCCCCCccEEECCCCCEEEEeCCC
Confidence                 12345555443  22      12223455677899999999988666544

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.93  E-value=5.9e-07  Score=77.60  Aligned_cols=182  Identities=10%  Similarity=0.089  Sum_probs=120.7

Q ss_pred             ccEEEEee--cCCEEEEecCCCcEEEEeCCCcceeeec--CCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceee
Q 043707          124 GHIYSLAA--SGDLLYTGSDSKNIRVWKNLKEFSGFKS--NSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHK  199 (347)
Q Consensus       124 ~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~~~~~~~~--h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~  199 (347)
                      ..+.++..  +++++++...++.|..||.......+..  ....+.++++.++++.+++...++.|..||.. ++... .
T Consensus        62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~-~  139 (300)
T 2qc5_A           62 AKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYE-Y  139 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEE-E
T ss_pred             CcceeEEECCCCCEEEEecCCCeEEEECCCCCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEE-c
Confidence            44566665  4667777666788999986644443332  34678999999999888777778899999876 43211 1


Q ss_pred             eecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEE-EecCCC
Q 043707          200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES-INAHDD  278 (347)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~-~~~h~~  278 (347)
                      ...                              .....+..+++.++++++++...++.|.+||. +++.... +..+..
T Consensus       140 ~~~------------------------------~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~  188 (300)
T 2qc5_A          140 DLP------------------------------NKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAA  188 (300)
T ss_dssp             ECS------------------------------STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTC
T ss_pred             cCC------------------------------CCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCC
Confidence            000                              13356788999999997776666788999998 5554432 223445


Q ss_pred             cEEEEEeCCCCEEEEE-eCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707          279 AINSVVAGFDSLVFTG-SADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       279 ~v~~i~~~~~~~l~s~-~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      .+..+++.+++.|..+ ...+.|.+||.. +..     ....+..+...+.+|+++++|++.++...
T Consensus       189 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~-----~~~~~~~~~~~~~~i~~d~~g~l~v~~~~  249 (300)
T 2qc5_A          189 APVGITSGNDGALWFVEIMGNKIGRITTT-GEI-----SEYDIPTPNARPHAITAGKNSEIWFTEWG  249 (300)
T ss_dssp             CEEEEEECTTSSEEEEETTTTEEEEECTT-CCE-----EEEECSSTTCCEEEEEECSTTCEEEEETT
T ss_pred             CcceEEECCCCCEEEEccCCCEEEEEcCC-CcE-----EEEECCCCCCCceEEEECCCCCEEEeccC
Confidence            6889999988844444 456789999883 221     11112234557899999999987666543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.90  E-value=8.6e-07  Score=76.56  Aligned_cols=182  Identities=11%  Similarity=0.125  Sum_probs=122.1

Q ss_pred             ccEEEEee--cCCEEEEecCCCcEEEEeCCCcceeee--cCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceee
Q 043707          124 GHIYSLAA--SGDLLYTGSDSKNIRVWKNLKEFSGFK--SNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHK  199 (347)
Q Consensus       124 ~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~~~~~~~--~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~  199 (347)
                      ..+.++..  +|+++++...++.|.+|+....+..+.  .....+.++++.++++.+++...++.|.+||.. ++.. ..
T Consensus        20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~   97 (300)
T 2qc5_A           20 SGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EY   97 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EE
T ss_pred             CCcceeeECCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-Ee
Confidence            35556654  577777777789999998664433322  233678999999999877777778889999987 4321 11


Q ss_pred             eecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEE-EEecCCC
Q 043707          200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE-SINAHDD  278 (347)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~-~~~~h~~  278 (347)
                      ...                              .....+..+++.+++.++++...++.|..||.. ++... .+.....
T Consensus        98 ~~~------------------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~  146 (300)
T 2qc5_A           98 PLP------------------------------QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGS  146 (300)
T ss_dssp             ECS------------------------------STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTC
T ss_pred             cCC------------------------------CCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCC
Confidence            100                              123567889999999888877778899999987 55442 2333456


Q ss_pred             cEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707          279 AINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       279 ~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      .+..+++.+++ ++++...++.|..||.. +..     .......+...+..+++.+++.+.++...
T Consensus       147 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~-----~~~~~~~~~~~~~~i~~d~~g~l~v~~~~  207 (300)
T 2qc5_A          147 YPAFITLGSDNALWFTENQNNSIGRITNT-GKL-----EEYPLPTNAAAPVGITSGNDGALWFVEIM  207 (300)
T ss_dssp             CEEEEEECTTSSEEEEETTTTEEEEECTT-CCE-----EEEECSSTTCCEEEEEECTTSSEEEEETT
T ss_pred             CceeEEECCCCCEEEEecCCCeEEEECCC-CcE-----EEeeCCCCCCCcceEEECCCCCEEEEccC
Confidence            78899999988 44444557889999873 221     11112233457899999999887766543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.90  E-value=4.1e-08  Score=96.85  Aligned_cols=184  Identities=8%  Similarity=0.015  Sum_probs=111.9

Q ss_pred             EEeecCCEEEEecCC-----CcEEEEeCCCcc-eeeecCCCCeeEEEEeCCCCEEEEEeCCCc--------------EEE
Q 043707          128 SLAASGDLLYTGSDS-----KNIRVWKNLKEF-SGFKSNSGLVKAIIITGDSNKIFTGHQDGK--------------IRI  187 (347)
Q Consensus       128 ~l~~~~~~l~tg~~d-----g~I~vwd~~~~~-~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~--------------I~v  187 (347)
                      +++++|++|+.+..+     ..|++||..... .....+...+..++|+|| +.|+.+..|+.              |++
T Consensus       169 ~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~  247 (741)
T 1yr2_A          169 AASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWL  247 (741)
T ss_dssp             EECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEE
T ss_pred             EECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEE
Confidence            344568888776543     369999965432 111112222367899999 89888887654              788


Q ss_pred             EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCC-----cEEEE
Q 043707          188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDK-----TLKVW  262 (347)
Q Consensus       188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg-----~i~vw  262 (347)
                      |++.++......... .                           ..+...+..+.|+|||++|+..+.++     .|++|
T Consensus       248 ~~lgt~~~~~~lv~~-~---------------------------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~  299 (741)
T 1yr2_A          248 HRLGTPQSADQPVFA-T---------------------------PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVA  299 (741)
T ss_dssp             EETTSCGGGCEEEEC-C---------------------------TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEE
T ss_pred             EECCCCchhCEEEec-c---------------------------CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEE
Confidence            887655321111000 0                           01333578899999999888877544     79999


Q ss_pred             eCCCCE-E-EEEEecCCCcEEEEEeCCCC-EEEEEeC----CCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccC
Q 043707          263 RISDCK-C-LESINAHDDAINSVVAGFDS-LVFTGSA----DGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQE  335 (347)
Q Consensus       263 dl~~~~-~-~~~~~~h~~~v~~i~~~~~~-~l~s~~~----dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~  335 (347)
                      |+.++. . ...+..+...+....+ |++ .|+..+.    ++.|.+||+.....    .....+..+...+..++|. +
T Consensus       300 d~~~~~~~~~~~l~~~~~~~~~~~~-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~----~~~~l~~~~~~~l~~~~~~-~  373 (741)
T 1yr2_A          300 RVTNGKIGPVTALIPDLKAQWDFVD-GVGDQLWFVSGDGAPLKKIVRVDLSGSTP----RFDTVVPESKDNLESVGIA-G  373 (741)
T ss_dssp             EEETTEECCCEEEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEECSSSSC----EEEEEECCCSSEEEEEEEE-B
T ss_pred             ECCCCCCcccEEecCCCCceEEEEe-ccCCEEEEEECCCCCCCEEEEEeCCCCcc----ccEEEecCCCCeEEEEEEE-C
Confidence            998773 2 5566656555555544 555 5555544    45699999864310    1122223445567788887 5


Q ss_pred             CCEEEEecCCC
Q 043707          336 SAVVYCGSSDG  346 (347)
Q Consensus       336 ~~~l~sgs~DG  346 (347)
                      +.++++...||
T Consensus       374 ~~lv~~~~~dg  384 (741)
T 1yr2_A          374 NRLFASYIHDA  384 (741)
T ss_dssp             TEEEEEEEETT
T ss_pred             CEEEEEEEECC
Confidence            56777777665

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.85  E-value=1.4e-06  Score=79.53  Aligned_cols=208  Identities=10%  Similarity=0.009  Sum_probs=119.9

Q ss_pred             EEEEee--cCCEEEEecCCCcEEEEeCCC-cceeeecCCCCeeEEEEeCCCCEEEEEeCCC--cEEEEecCCCCCceee-
Q 043707          126 IYSLAA--SGDLLYTGSDSKNIRVWKNLK-EFSGFKSNSGLVKAIIITGDSNKIFTGHQDG--KIRIWKVSRKNPSVHK-  199 (347)
Q Consensus       126 V~~l~~--~~~~l~tg~~dg~I~vwd~~~-~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg--~I~vwd~~~~~~~~~~-  199 (347)
                      ...+++  +++++++...++.|++||... .+..+........ ++|+++++.|+.+..++  .|.+|+...+...... 
T Consensus       133 P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g  211 (409)
T 3hrp_A          133 MWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIG  211 (409)
T ss_dssp             EEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEE
T ss_pred             ceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEee
Confidence            445554  566777777789999999763 3433333333344 99999999999988866  7888887765431111 


Q ss_pred             ee-c---c-------cccccceEEeccCCCeEEEEeec-ceeeee------ecCCCe--eEEEEcCC-CCEEEEEeCCCc
Q 043707          200 RV-G---S-------LPTFKDYVKSSVNPKNYVEVRRN-RNVLKI------RHYDAV--SCLSLNAE-QGLLYSGSWDKT  258 (347)
Q Consensus       200 ~~-~---~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~h~~~V--~~l~~~~~-~~~l~s~s~dg~  258 (347)
                      .. .   .       .+....++.... ...+..+... ......      ++...-  ..++|+|+ +.++++-...+.
T Consensus       212 ~~~~~~~~~p~~iav~p~~g~lyv~d~-~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~  290 (409)
T 3hrp_A          212 QLGSTFSGKIGAVALDETEEWLYFVDS-NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSS  290 (409)
T ss_dssp             ECCTTSCSCCCBCEECTTSSEEEEECT-TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTE
T ss_pred             eccchhcCCcEEEEEeCCCCeEEEEEC-CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCE
Confidence            00 0   0       111112222211 2222222211 111111      111112  28999995 555555566889


Q ss_pred             EEEEeCCCCEEEEEEecCC---------------CcEEEEEeCCCC-EEEEEe-CCCcEEEEEcccCCccceeeehhhhh
Q 043707          259 LKVWRISDCKCLESINAHD---------------DAINSVVAGFDS-LVFTGS-ADGTVKVWRRELQGKGTKHFLAQVLL  321 (347)
Q Consensus       259 i~vwdl~~~~~~~~~~~h~---------------~~v~~i~~~~~~-~l~s~~-~dg~I~vwd~~~~~~~~~~~~~~~~~  321 (347)
                      |+.|+....  +..+.++.               .....|++.+++ ++++-. .++.|+.|++..+..       ..+.
T Consensus       291 I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-------~~~~  361 (409)
T 3hrp_A          291 VYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-------STVA  361 (409)
T ss_dssp             EEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-------EEEE
T ss_pred             EEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-------EEEe
Confidence            999997643  33333332               347899999998 555556 789999999653321       1111


Q ss_pred             c---------------cCCcEEEEEEccCCCEEEEecC
Q 043707          322 K---------------QENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       322 ~---------------h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      +               .-.....|++++++.++++-..
T Consensus       362 g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~  399 (409)
T 3hrp_A          362 GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAW  399 (409)
T ss_dssp             ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEEST
T ss_pred             CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECC
Confidence            1               1246899999999776666543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.83  E-value=1.9e-07  Score=81.58  Aligned_cols=157  Identities=11%  Similarity=0.129  Sum_probs=105.8

Q ss_pred             EEEEee--cCCEEEEecCC---------------CcEEEEeCCCcceeeecCCCCeeEEEEe----CCCCEEEEE-eCCC
Q 043707          126 IYSLAA--SGDLLYTGSDS---------------KNIRVWKNLKEFSGFKSNSGLVKAIIIT----GDSNKIFTG-HQDG  183 (347)
Q Consensus       126 V~~l~~--~~~~l~tg~~d---------------g~I~vwd~~~~~~~~~~h~~~V~~l~~s----p~~~~l~s~-~~Dg  183 (347)
                      +.++.+  +|+++++...+               +.|..|+.......+..+......++|+    |+++.|+.+ ..++
T Consensus       119 ~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~  198 (314)
T 1pjx_A          119 CNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTK  198 (314)
T ss_dssp             CCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTT
T ss_pred             CcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCC
Confidence            445554  56677666544               5677777554444443444567899999    998665554 5678


Q ss_pred             cEEEEecC-CCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecC-CCeeEEEEcCCCCEEEEEeCCCcEEE
Q 043707          184 KIRIWKVS-RKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHY-DAVSCLSLNAEQGLLYSGSWDKTLKV  261 (347)
Q Consensus       184 ~I~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~s~dg~i~v  261 (347)
                      .|.+||++ .++.........                           ...+. ..+..++++++++++++...++.|.+
T Consensus       199 ~i~~~~~~~~g~~~~~~~~~~---------------------------~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~  251 (314)
T 1pjx_A          199 KLWSYDIKGPAKIENKKVWGH---------------------------IPGTHEGGADGMDFDEDNNLLVANWGSSHIEV  251 (314)
T ss_dssp             EEEEEEEEETTEEEEEEEEEE---------------------------CCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred             eEEEEECCCCCccccceEEEE---------------------------CCCCCCCCCCceEECCCCCEEEEEcCCCEEEE
Confidence            99999986 222110000000                           00122 45678999999998888878899999


Q ss_pred             EeCCCCEEEEEEecCCCcEEEEEeCCCC-EEE-EEeCCCcEEEEEcccCC
Q 043707          262 WRISDCKCLESINAHDDAINSVVAGFDS-LVF-TGSADGTVKVWRRELQG  309 (347)
Q Consensus       262 wdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~-s~~~dg~I~vwd~~~~~  309 (347)
                      ||.++++.+..+..+...+.++++++++ .|+ +...++.|..|++...+
T Consensus       252 ~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g  301 (314)
T 1pjx_A          252 FGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             ECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             EcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence            9998777777777777789999999987 355 44567899999987543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.82  E-value=3.3e-06  Score=76.16  Aligned_cols=221  Identities=10%  Similarity=-0.013  Sum_probs=120.8

Q ss_pred             eeEeeeeccccEEEEeecCCEEEEec----------CCCcEEEEeCCCc--ceeeecC-------CCCeeEEEEeCCCCE
Q 043707          115 LIGSIVRKEGHIYSLAASGDLLYTGS----------DSKNIRVWKNLKE--FSGFKSN-------SGLVKAIIITGDSNK  175 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~~~~~l~tg~----------~dg~I~vwd~~~~--~~~~~~h-------~~~V~~l~~sp~~~~  175 (347)
                      ++..+..-..+-..++++|++|+.+.          .++.|.+||....  ...+..-       ......++|+|+|++
T Consensus        59 ~~~~i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~  138 (373)
T 2mad_H           59 ILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNAD  138 (373)
T ss_pred             EEEEecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCE
Confidence            45555544444556778899888875          3678999996432  2222211       123458999999999


Q ss_pred             EEEEeC--CCcEEEEecCCCCCcee-eeecc----ccccc-ceEEeccCCCeEEEEeecceeeee------ecCCC-eeE
Q 043707          176 IFTGHQ--DGKIRIWKVSRKNPSVH-KRVGS----LPTFK-DYVKSSVNPKNYVEVRRNRNVLKI------RHYDA-VSC  240 (347)
Q Consensus       176 l~s~~~--Dg~I~vwd~~~~~~~~~-~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~h~~~-V~~  240 (347)
                      |+.+..  ++.|.++| .+++.... ..+..    .+... .++..+.++...+...........      ....+ ...
T Consensus       139 l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~  217 (373)
T 2mad_H          139 LLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQ  217 (373)
T ss_pred             EEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeec
Confidence            998874  57899999 88765433 22211    11111 112222222211111111111000      01111 122


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCC--EEEEEEecC----------CCcEEEEEeCCCC-EEEEEeC----------C
Q 043707          241 LSLNAEQGLLYSGSWDKTLKVWRISDC--KCLESINAH----------DDAINSVVAGFDS-LVFTGSA----------D  297 (347)
Q Consensus       241 l~~~~~~~~l~s~s~dg~i~vwdl~~~--~~~~~~~~h----------~~~v~~i~~~~~~-~l~s~~~----------d  297 (347)
                      ..+.+++..++..+.++.+.+.|+...  +.+..+...          ......+.+++++ .++++..          +
T Consensus       218 ~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~  297 (373)
T 2mad_H          218 PAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAA  297 (373)
T ss_pred             ceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCC
Confidence            345555554444446889999999654  233333211          1223447788886 4444432          3


Q ss_pred             CcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCC-EEEEec
Q 043707          298 GTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESA-VVYCGS  343 (347)
Q Consensus       298 g~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~l~sgs  343 (347)
                      +.|.++|+.+.+      ....+. -......++|+|||+ +++++.
T Consensus       298 ~~V~VID~~t~~------vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~  337 (373)
T 2mad_H          298 KEVTSVTGLVGQ------TSSQIS-LGHDVDAISVAQDGGPDLYALS  337 (373)
T ss_pred             CeEEEEECCCCE------EEEEEE-CCCCcCeEEECCCCCeEEEEEc
Confidence            579999997543      223332 123578999999999 787776

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.76  E-value=5.9e-07  Score=88.55  Aligned_cols=172  Identities=15%  Similarity=0.109  Sum_probs=109.9

Q ss_pred             ecCCEEEEecCCCc--------------EEEEeCCCcc----eeeec--CCCCeeEEEEeCCCCEEEEEeCCC-----cE
Q 043707          131 ASGDLLYTGSDSKN--------------IRVWKNLKEF----SGFKS--NSGLVKAIIITGDSNKIFTGHQDG-----KI  185 (347)
Q Consensus       131 ~~~~~l~tg~~dg~--------------I~vwd~~~~~----~~~~~--h~~~V~~l~~sp~~~~l~s~~~Dg-----~I  185 (347)
                      ++ +.|+.+..++.              |++|+.....    ..+..  +...+..+.|+|+|++|+..+.++     .|
T Consensus       218 pD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l  296 (741)
T 1yr2_A          218 GN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTV  296 (741)
T ss_dssp             TT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEE
T ss_pred             CC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceE
Confidence            45 67777666543              8899865332    22222  333588999999999988887654     79


Q ss_pred             EEEecCCCCCc-eeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCC----CcEE
Q 043707          186 RIWKVSRKNPS-VHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWD----KTLK  260 (347)
Q Consensus       186 ~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d----g~i~  260 (347)
                      ++||+.++... ....                               ..+...+.... .+++..|+..+.+    +.|.
T Consensus       297 ~~~d~~~~~~~~~~~l-------------------------------~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~  344 (741)
T 1yr2_A          297 HVARVTNGKIGPVTAL-------------------------------IPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIV  344 (741)
T ss_dssp             EEEEEETTEECCCEEE-------------------------------ECSSSSCEEEE-EEETTEEEEEECTTCTTCEEE
T ss_pred             EEEECCCCCCcccEEe-------------------------------cCCCCceEEEE-eccCCEEEEEECCCCCCCEEE
Confidence            99998765211 1111                               01333333333 4788888877753    4599


Q ss_pred             EEeCCCC--EEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhc-cCCcEEEEEEccCCC
Q 043707          261 VWRISDC--KCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLK-QENAITALAVNQESA  337 (347)
Q Consensus       261 vwdl~~~--~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~-h~~~V~~l~~~p~~~  337 (347)
                      +||+.++  +....+..+...+..+.+..+.++++...|+..+||.+...+.     ....+.. ....|..++++|+++
T Consensus       345 ~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~-----~~~~l~~~~~~~v~~~~~s~d~~  419 (741)
T 1yr2_A          345 RVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGK-----PAGAVSLPGIGSASGLSGRPGDR  419 (741)
T ss_dssp             EEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSC-----EEEECBCSSSCEEEEEECCBTCS
T ss_pred             EEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCC-----ceeeccCCCCeEEEEeecCCCCC
Confidence            9999874  3444445555567777887444788888999988887763332     2222332 356789999999987


Q ss_pred             EEE
Q 043707          338 VVY  340 (347)
Q Consensus       338 ~l~  340 (347)
                      .|+
T Consensus       420 ~l~  422 (741)
T 1yr2_A          420 HAY  422 (741)
T ss_dssp             CEE
T ss_pred             EEE
Confidence            555

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.72  E-value=1.1e-06  Score=76.49  Aligned_cols=119  Identities=10%  Similarity=0.029  Sum_probs=81.0

Q ss_pred             cEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEE-EEeCCCcEEEEecC--CCCCceeeeecccccccceEEeccCCCeE
Q 043707          144 NIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIF-TGHQDGKIRIWKVS--RKNPSVHKRVGSLPTFKDYVKSSVNPKNY  220 (347)
Q Consensus       144 ~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~~~Dg~I~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (347)
                      .|+.++.......+..+......++|+|+++.|+ +...++.|.+||++  ++...........                
T Consensus       131 ~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~----------------  194 (297)
T 3g4e_A          131 ALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKL----------------  194 (297)
T ss_dssp             EEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEEC----------------
T ss_pred             EEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEEC----------------
Confidence            4555554433333334445678999999998665 45567899999984  3331111100000                


Q ss_pred             EEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeC-CCC
Q 043707          221 VEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAG-FDS  289 (347)
Q Consensus       221 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~-~~~  289 (347)
                                 ..+......+++.++|++.++...++.|.+||..+++.+..+..+...+++++|. |++
T Consensus       195 -----------~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~  253 (297)
T 3g4e_A          195 -----------EKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNY  253 (297)
T ss_dssp             -----------CGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGG
T ss_pred             -----------CCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCC
Confidence                       0123456789999999888877778889999999899999998887789999997 664

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.69  E-value=1.3e-06  Score=77.28  Aligned_cols=192  Identities=6%  Similarity=-0.034  Sum_probs=111.9

Q ss_pred             CCCcEEEEeCCCcc--eee-e-----cCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeeccc-------c
Q 043707          141 DSKNIRVWKNLKEF--SGF-K-----SNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSL-------P  205 (347)
Q Consensus       141 ~dg~I~vwd~~~~~--~~~-~-----~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~-------~  205 (347)
                      .++.|.+||.....  ..+ .     ........+.+.. ++.+++...++.|.+||..+++..........       +
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~   93 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLS   93 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeC
Confidence            47899999965321  111 0     1223467788754 44555566689999999998875443321111       1


Q ss_pred             cccceEEeccCCCeEEEEee--cceeeeeecCC------CeeEEEEcCCCCEEEEEe--CCCcEEEEeCCCCEEEEEEec
Q 043707          206 TFKDYVKSSVNPKNYVEVRR--NRNVLKIRHYD------AVSCLSLNAEQGLLYSGS--WDKTLKVWRISDCKCLESINA  275 (347)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~------~V~~l~~~~~~~~l~s~s--~dg~i~vwdl~~~~~~~~~~~  275 (347)
                      .. .++........+..+..  ......+.-..      ....|++  ++..|+++.  .+++|.++|+.+++.+..+..
T Consensus        94 ~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~  170 (328)
T 3dsm_A           94 DE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI  170 (328)
T ss_dssp             TT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC
T ss_pred             CC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc
Confidence            11 12222211222222211  11111222222      4566777  455566665  488999999999998888875


Q ss_pred             CCCcEEEEEeCCCCEEEEEeC-C----------CcEEEEEcccCCccceeeehhhhhcc-CCcEEEEEEccCCCEEEEec
Q 043707          276 HDDAINSVVAGFDSLVFTGSA-D----------GTVKVWRRELQGKGTKHFLAQVLLKQ-ENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       276 h~~~v~~i~~~~~~~l~s~~~-d----------g~I~vwd~~~~~~~~~~~~~~~~~~h-~~~V~~l~~~p~~~~l~sgs  343 (347)
                      .. ....+++++++.++.++. +          +.|.+||..+..      ....+... ......|+|+|+++.|+++.
T Consensus       171 g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~------v~~~~~~~~g~~p~~la~~~d~~~lyv~~  243 (328)
T 3dsm_A          171 GI-QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT------VEKQFKFKLGDWPSEVQLNGTRDTLYWIN  243 (328)
T ss_dssp             SS-CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE------EEEEEECCTTCCCEEEEECTTSCEEEEES
T ss_pred             CC-CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe------EEEEEecCCCCCceeEEEecCCCEEEEEc
Confidence            43 356788999985554443 3          789999987443      22222211 23689999999999888764

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.66  E-value=6.6e-08  Score=87.19  Aligned_cols=173  Identities=12%  Similarity=0.076  Sum_probs=87.7

Q ss_pred             ecCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeec------
Q 043707          131 ASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVG------  202 (347)
Q Consensus       131 ~~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~------  202 (347)
                      .+++++++++.||.|+.||..  +....+..  +.+.+..+..++..+++++.||.|+.||..+++........      
T Consensus         7 v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~   84 (369)
T 2hz6_A            7 LPETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ   84 (369)
T ss_dssp             -CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred             eeCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence            367889999999999999954  44444444  55655556667778888889999999999887654322111      


Q ss_pred             ccccc--cceEEeccCCCeEEEEee-cceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCc
Q 043707          203 SLPTF--KDYVKSSVNPKNYVEVRR-NRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDA  279 (347)
Q Consensus       203 ~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~  279 (347)
                      ..|..  ...+........++.+.. .....+......  ...++|++..+++++.|+.|+.||.++++.+-.+..+.  
T Consensus        85 ~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~--~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--  160 (369)
T 2hz6_A           85 ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF--ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--  160 (369)
T ss_dssp             TCSCC-----CCCCEEEEEEEEECCC------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--
T ss_pred             cCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC--cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--
Confidence            11111  111111111111111111 111111111111  23456678899999999999999999998765554221  


Q ss_pred             EEEEEeCCC----CEEEEEeCCCcEEEEEcccCC
Q 043707          280 INSVVAGFD----SLVFTGSADGTVKVWRRELQG  309 (347)
Q Consensus       280 v~~i~~~~~----~~l~s~~~dg~I~vwd~~~~~  309 (347)
                      .....+..+    +.+++++.||.|+.||.+++.
T Consensus       161 ~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~  194 (369)
T 2hz6_A          161 YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD  194 (369)
T ss_dssp             ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred             ccCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence            122233332    577888999999999998654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.64  E-value=5.7e-07  Score=87.97  Aligned_cols=182  Identities=15%  Similarity=0.131  Sum_probs=108.1

Q ss_pred             EEeecCCEEEE-----ecCCCcEEEEeCCCcce-eeecCCCCeeEEEEeCCCCEEEEEeCCCc-------------EEEE
Q 043707          128 SLAASGDLLYT-----GSDSKNIRVWKNLKEFS-GFKSNSGLVKAIIITGDSNKIFTGHQDGK-------------IRIW  188 (347)
Q Consensus       128 ~l~~~~~~l~t-----g~~dg~I~vwd~~~~~~-~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~-------------I~vw  188 (347)
                      +++++|++||-     |++...|++||+..... ....+......++|+ |++.|+.+..+..             |++|
T Consensus       135 ~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~  213 (693)
T 3iuj_A          135 SFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFH  213 (693)
T ss_dssp             EECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEE
T ss_pred             EECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEE
Confidence            45567887773     34446799999764321 111111113578899 9999999887743             8888


Q ss_pred             ecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeee-cCCCeeEEEEcCCCCEEEEEeC----CCcEEEEe
Q 043707          189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIR-HYDAVSCLSLNAEQGLLYSGSW----DKTLKVWR  263 (347)
Q Consensus       189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s~----dg~i~vwd  263 (347)
                      ++.+.......... .                           .. |...+..+.|+||+++|+....    +..|+++|
T Consensus       214 ~lgt~~~~~~~v~~-~---------------------------~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d  265 (693)
T 3iuj_A          214 RLGTAQEDDRLVFG-A---------------------------IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKD  265 (693)
T ss_dssp             ETTSCGGGCEEEES-C---------------------------SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEE
T ss_pred             ECCCCcccceEEEe-c---------------------------CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEE
Confidence            88765421111100 0                           01 2344678899999998765432    35899999


Q ss_pred             CCCCE-EEEEEecCCCcEEEEEeCCCC-EEEEEeCC---CcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCE
Q 043707          264 ISDCK-CLESINAHDDAINSVVAGFDS-LVFTGSAD---GTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAV  338 (347)
Q Consensus       264 l~~~~-~~~~~~~h~~~v~~i~~~~~~-~l~s~~~d---g~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~  338 (347)
                      +.+++ ....+..+.........++++ +++....+   +.|.++|+......    ..+.+..|...+.  .|+++++.
T Consensus       266 ~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~----~~~~l~~~~~~~~--~~s~~g~~  339 (693)
T 3iuj_A          266 LSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA----HWRDLIPERQQVL--TVHSGSGY  339 (693)
T ss_dssp             TTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGG----GCEEEECCCSSCE--EEEEETTE
T ss_pred             CCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc----ccEEEecCCCCEE--EEEEECCE
Confidence            97763 455666666665555333334 44444443   67888888743210    1123444544554  88888887


Q ss_pred             EEEecC
Q 043707          339 VYCGSS  344 (347)
Q Consensus       339 l~sgs~  344 (347)
                      |+....
T Consensus       340 lv~~~~  345 (693)
T 3iuj_A          340 LFAEYM  345 (693)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            776543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.59  E-value=1.1e-05  Score=73.52  Aligned_cols=178  Identities=7%  Similarity=0.072  Sum_probs=106.6

Q ss_pred             EEEeecCCEEEEecCCC--cEEEEeCCCcce--ee---ec-CCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCcee
Q 043707          127 YSLAASGDLLYTGSDSK--NIRVWKNLKEFS--GF---KS-NSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVH  198 (347)
Q Consensus       127 ~~l~~~~~~l~tg~~dg--~I~vwd~~~~~~--~~---~~-h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~  198 (347)
                      .++.++++.|+.+..++  .|.+|+......  .+   .. ....+.+++++|++..|+.+..++.|+.||..++.....
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~  255 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI  255 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence            34455677888887766  788887543221  22   12 446688999999545666677789999999987653221


Q ss_pred             ee--------------ecccccccceEEeccCCCeEEEEeecc-eeeeeec---------------CCCeeEEEEcCCCC
Q 043707          199 KR--------------VGSLPTFKDYVKSSVNPKNYVEVRRNR-NVLKIRH---------------YDAVSCLSLNAEQG  248 (347)
Q Consensus       199 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h---------------~~~V~~l~~~~~~~  248 (347)
                      ..              +...+....++........+..+.... .....++               ......+++++++.
T Consensus       256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~  335 (409)
T 3hrp_A          256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN  335 (409)
T ss_dssp             EECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC
T ss_pred             ecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC
Confidence            00              000111111222222222222222111 1122222               23478899999999


Q ss_pred             EEEEEe-CCCcEEEEeCCCCEEEEEEecC---------------CCcEEEEEeCCCC-EEEEEeCCCcEEEEEc
Q 043707          249 LLYSGS-WDKTLKVWRISDCKCLESINAH---------------DDAINSVVAGFDS-LVFTGSADGTVKVWRR  305 (347)
Q Consensus       249 ~l~s~s-~dg~i~vwdl~~~~~~~~~~~h---------------~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~  305 (347)
                      ++++-. .+++|+.||+.+++. ..+.++               -.....|++.+++ ++++-..+++|+.+++
T Consensus       336 lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          336 FYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             EEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            777777 789999999888764 444433               2457899999988 4455566788887765

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.56  E-value=3.6e-06  Score=75.65  Aligned_cols=148  Identities=10%  Similarity=0.053  Sum_probs=100.8

Q ss_pred             ecCCEEEEecC-----CCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEe----------CCCcEEEEecCCC
Q 043707          131 ASGDLLYTGSD-----SKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGH----------QDGKIRIWKVSRK  193 (347)
Q Consensus       131 ~~~~~l~tg~~-----dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~----------~Dg~I~vwd~~~~  193 (347)
                      ++++.++....     ++.|.+.|..  +.+..+..-..+  .++++|+|++++.+.          .++.|.+||..+.
T Consensus        42 pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~  119 (386)
T 3sjl_D           42 PDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL  119 (386)
T ss_dssp             CCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC
Confidence            56666666654     5789999964  334444443344  499999999888876          3678999999988


Q ss_pred             CCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC--CCcEEEEeCCCCEEEE
Q 043707          194 NPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW--DKTLKVWRISDCKCLE  271 (347)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--dg~i~vwdl~~~~~~~  271 (347)
                      +......+..-..                         .........++|+|||++|+++..  ++.|.|+|+.+++.+.
T Consensus       120 ~v~~~I~v~~g~r-------------------------~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~  174 (386)
T 3sjl_D          120 LPTADIELPDAPR-------------------------FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKR  174 (386)
T ss_dssp             CEEEEEEETTCCC-------------------------CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred             eEEEEEECCCccc-------------------------cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEE
Confidence            7544433221000                         001224557999999999998874  6899999999999999


Q ss_pred             EEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCC
Q 043707          272 SINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQG  309 (347)
Q Consensus       272 ~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~  309 (347)
                      ++.....   ...+ |.+  .+++.+.||++.+.++...+
T Consensus       175 tI~v~g~---~~~~-P~g~~~~~~~~~DG~~~~v~~~~~g  210 (386)
T 3sjl_D          175 MLDVPDC---YHIF-PTAPDTFFMHCRDGSLAKVAFGTEG  210 (386)
T ss_dssp             EEECCSE---EEEE-EEETTEEEEEETTSCEEEEECCSSS
T ss_pred             EEECCCc---ceee-cCCCceeEEECCCCCEEEEECCCCC
Confidence            9864321   1222 332  66788889999999987533

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.54  E-value=3.5e-06  Score=74.94  Aligned_cols=157  Identities=10%  Similarity=0.107  Sum_probs=99.7

Q ss_pred             CCeeEEEEeCCCCEEEEEe--CCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCee
Q 043707          162 GLVKAIIITGDSNKIFTGH--QDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVS  239 (347)
Q Consensus       162 ~~V~~l~~sp~~~~l~s~~--~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  239 (347)
                      ..+..++++++|+.+++..  .++.++||.+.+++.   .   ..+...                    .....+...+.
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~---~---~~p~~~--------------------~~~~~~~~~p~   70 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL---I---PFPPQS--------------------GNAIITFDTVL   70 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE---E---ESCCCC--------------------SSCCCCCSCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe---e---cCCCcc--------------------cCcccceeEee
Confidence            6789999999998888864  234467777653321   1   011000                    00013567899


Q ss_pred             EEEEcCCCCEEEEEeC-----CCcEEEEeCCCCEEEEEEecC------CCcEEEEEeCCC-CEE-EEEe---CCCcEEEE
Q 043707          240 CLSLNAEQGLLYSGSW-----DKTLKVWRISDCKCLESINAH------DDAINSVVAGFD-SLV-FTGS---ADGTVKVW  303 (347)
Q Consensus       240 ~l~~~~~~~~l~s~s~-----dg~i~vwdl~~~~~~~~~~~h------~~~v~~i~~~~~-~~l-~s~~---~dg~I~vw  303 (347)
                      .++++++++++++-..     ++.|.+||+.+++.+..+...      ...+..+++.++ +.+ ++..   .++.|.+|
T Consensus        71 gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~  150 (343)
T 2qe8_A           71 GIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRV  150 (343)
T ss_dssp             EEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEE
T ss_pred             EEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEE
Confidence            9999999876665433     578999999999987777542      235688999875 544 4444   57899999


Q ss_pred             EcccCCccceeeehh--h---------hhc--------------cCCcEEEEEEccCCCEEEEecCCC
Q 043707          304 RRELQGKGTKHFLAQ--V---------LLK--------------QENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       304 d~~~~~~~~~~~~~~--~---------~~~--------------h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      |+..+..  ......  .         ..+              -...+..|+|+|+++.|+.+..++
T Consensus       151 d~~~g~~--~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~  216 (343)
T 2qe8_A          151 DLQTGLA--ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHS  216 (343)
T ss_dssp             ETTTCCE--EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSC
T ss_pred             ECCCCCE--EEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCC
Confidence            9874321  000000  0         000              012468999999999998876554

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.54  E-value=4.1e-06  Score=75.23  Aligned_cols=221  Identities=11%  Similarity=0.075  Sum_probs=124.7

Q ss_pred             ceeEeeeeccccEEEEeecCCEEEEec----------CCCcEEEEeCCCc--ceeeecC-------CCCeeEEEEeCCCC
Q 043707          114 GLIGSIVRKEGHIYSLAASGDLLYTGS----------DSKNIRVWKNLKE--FSGFKSN-------SGLVKAIIITGDSN  174 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~~~~~l~tg~----------~dg~I~vwd~~~~--~~~~~~h-------~~~V~~l~~sp~~~  174 (347)
                      +.+.++..-..+-..++++|++|+.+.          .++.|.+||....  ...+...       ......++|+|||+
T Consensus        70 ~v~~~I~vG~~P~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk  149 (386)
T 3sjl_D           70 RVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK  149 (386)
T ss_dssp             EEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS
T ss_pred             eEEEEEECCCCCcEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCC
Confidence            345555544444367778899777765          3678999996533  3333221       12466799999999


Q ss_pred             EEEEEeC--CCcEEEEecCCCCCceeeeecc----cccc-cceEEeccCCCeEEEEeec-ceeeee--ecC----CCe-e
Q 043707          175 KIFTGHQ--DGKIRIWKVSRKNPSVHKRVGS----LPTF-KDYVKSSVNPKNYVEVRRN-RNVLKI--RHY----DAV-S  239 (347)
Q Consensus       175 ~l~s~~~--Dg~I~vwd~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~--~h~----~~V-~  239 (347)
                      +++.+..  ++.|.++|+.+++......+..    .|.. ..++..+.++...+..... ......  .+.    ..+ .
T Consensus       150 ~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~  229 (386)
T 3sjl_D          150 TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLIN  229 (386)
T ss_dssp             EEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCS
T ss_pred             EEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccc
Confidence            9888864  6899999999987654443321    1211 2233333333332222211 121110  111    111 1


Q ss_pred             EEEEc-CCCCEEEEEeCCCcEEEEeCCCCE--EEEEEec----------CCCcEEEEEeCCCC-EEEEEeC---------
Q 043707          240 CLSLN-AEQGLLYSGSWDKTLKVWRISDCK--CLESINA----------HDDAINSVVAGFDS-LVFTGSA---------  296 (347)
Q Consensus       240 ~l~~~-~~~~~l~s~s~dg~i~vwdl~~~~--~~~~~~~----------h~~~v~~i~~~~~~-~l~s~~~---------  296 (347)
                      ...|. ++|++++ .+.+|++++.|+....  .+..+..          .......+++++++ .++....         
T Consensus       230 ~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~  308 (386)
T 3sjl_D          230 HPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKT  308 (386)
T ss_dssp             CCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTS
T ss_pred             cceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCC
Confidence            23554 5665555 5558999999997553  3333320          11223346677776 4444321         


Q ss_pred             -CCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCC-EEEEe
Q 043707          297 -DGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESA-VVYCG  342 (347)
Q Consensus       297 -dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~l~sg  342 (347)
                       .++|.+.|+.+.+.      +..+.. ...+..|++++|++ +|+++
T Consensus       309 ~~~~V~viD~~t~kv------~~~i~v-g~~~~~lavs~D~~~~ly~t  349 (386)
T 3sjl_D          309 ASRFVVVLDAKTGER------LAKFEM-GHEIDSINVSQDEKPLLYAL  349 (386)
T ss_dssp             CEEEEEEEETTTCCE------EEEEEE-EEEECEEEECSSSSCEEEEE
T ss_pred             CCCEEEEEECCCCeE------EEEEEC-CCCcceEEECCCCCeEEEEE
Confidence             35799999986543      222211 12688999999996 66664

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.52  E-value=1.1e-05  Score=71.80  Aligned_cols=196  Identities=10%  Similarity=0.051  Sum_probs=111.5

Q ss_pred             ccEEEEee--cCCEEEEec--CCCcEEEEeC-CCcceee-------ecCCCCeeEEEEeCCCCEEEEEeC-----CCcEE
Q 043707          124 GHIYSLAA--SGDLLYTGS--DSKNIRVWKN-LKEFSGF-------KSNSGLVKAIIITGDSNKIFTGHQ-----DGKIR  186 (347)
Q Consensus       124 ~~V~~l~~--~~~~l~tg~--~dg~I~vwd~-~~~~~~~-------~~h~~~V~~l~~sp~~~~l~s~~~-----Dg~I~  186 (347)
                      .....++.  +|+++++..  .++.++||.+ ...+..+       ..|-..+.++++.++++.+++-..     ++.|.
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~   96 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV   96 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence            45555554  577887753  2342445542 2222222       124467999999999865555433     57899


Q ss_pred             EEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEE-EEe---CCCcEEEE
Q 043707          187 IWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLY-SGS---WDKTLKVW  262 (347)
Q Consensus       187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s---~dg~i~vw  262 (347)
                      +||+.+++...........                          ..+...+..+++++++..++ +..   .++.|.+|
T Consensus        97 ~~d~~tg~~~~~~~~~~~~--------------------------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~  150 (343)
T 2qe8_A           97 AWDTLNNQLSRVIYLPPPI--------------------------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRV  150 (343)
T ss_dssp             EEETTTTEEEEEEECCTTT--------------------------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEE
T ss_pred             EEECCCCeEEEEEECChhh--------------------------cccccccceEEEecCCCEEEEEcCccCCCCeEEEE
Confidence            9999877533222211000                          01334568899998655554 444   57899999


Q ss_pred             eCCCCEEEEEEecCC-----------------------------CcEEEEEeCCCC-EEEEEeCCC-cEEEEEcccCCcc
Q 043707          263 RISDCKCLESINAHD-----------------------------DAINSVVAGFDS-LVFTGSADG-TVKVWRRELQGKG  311 (347)
Q Consensus       263 dl~~~~~~~~~~~h~-----------------------------~~v~~i~~~~~~-~l~s~~~dg-~I~vwd~~~~~~~  311 (347)
                      |+.+++....+..|.                             ..++.|+++|++ .|+.+..++ .|..++.......
T Consensus       151 d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~  230 (343)
T 2qe8_A          151 DLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNL  230 (343)
T ss_dssp             ETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCT
T ss_pred             ECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCC
Confidence            998887766554321                             235789999998 677666555 5544443211100


Q ss_pred             --ceeeehhh--hhccCCcEEEEEEccCCCEEEEecCC
Q 043707          312 --TKHFLAQV--LLKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       312 --~~~~~~~~--~~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                        ........  ..++......++++++|.++++...+
T Consensus       231 ~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~  268 (343)
T 2qe8_A          231 QLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAH  268 (343)
T ss_dssp             TCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGG
T ss_pred             CCChhhhhcceEecccCCCCceEEECCCCCEEEEccCC
Confidence              00000111  11233456678899988877765543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.51  E-value=2.2e-05  Score=70.70  Aligned_cols=132  Identities=5%  Similarity=-0.069  Sum_probs=87.6

Q ss_pred             cEEEEeCCC--cceeeecCCCCeeEEEEeCCCCEEEEEe----------CCCcEEEEecCCCCCceeeeecccccccceE
Q 043707          144 NIRVWKNLK--EFSGFKSNSGLVKAIIITGDSNKIFTGH----------QDGKIRIWKVSRKNPSVHKRVGSLPTFKDYV  211 (347)
Q Consensus       144 ~I~vwd~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~~----------~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~  211 (347)
                      .|.++|...  .+..+..-..+  .++++|++++++.+.          .++.|.+||..+.+......+.....     
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~-----  120 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR-----  120 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccc-----
Confidence            788888543  23333332233  999999999999886          36789999998765433322210000     


Q ss_pred             EeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC--CCcEEEEeCCCCEEEEE-EecCCCcEEEEEeCCC
Q 043707          212 KSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW--DKTLKVWRISDCKCLES-INAHDDAINSVVAGFD  288 (347)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--dg~i~vwdl~~~~~~~~-~~~h~~~v~~i~~~~~  288 (347)
                                          ..+......+.|+|++++|+++..  ++.|.++| .+++.+.. +.... .   +.+.|+
T Consensus       121 --------------------~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~-~---~~~~~~  175 (373)
T 2mad_H          121 --------------------FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT-C---YHIHPG  175 (373)
T ss_pred             --------------------cccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc-e---EEEEeC
Confidence                                001123457899999999999874  57899999 99998877 65322 2   334444


Q ss_pred             C--EEEEEeCCCcEEEEEcccC
Q 043707          289 S--LVFTGSADGTVKVWRRELQ  308 (347)
Q Consensus       289 ~--~l~s~~~dg~I~vwd~~~~  308 (347)
                      +  .+++.+.||.+.++|. .+
T Consensus       176 ~~~~~~~~~~dg~~~~vd~-~g  196 (373)
T 2mad_H          176 APSTFYLLCAQGGLAKTDH-AG  196 (373)
T ss_pred             CCceEEEEcCCCCEEEEEC-CC
Confidence            3  5667778999999998 44

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.50  E-value=8.3e-07  Score=86.81  Aligned_cols=142  Identities=13%  Similarity=0.137  Sum_probs=89.8

Q ss_pred             CCCCeeEEEEeCCCCEEEE-----EeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeec
Q 043707          160 NSGLVKAIIITGDSNKIFT-----GHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRH  234 (347)
Q Consensus       160 h~~~V~~l~~sp~~~~l~s-----~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  234 (347)
                      |...+..++|+|||++|+-     |+.+.+|++||+.+++......                                 .
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~---------------------------------~  173 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL---------------------------------K  173 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE---------------------------------E
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc---------------------------------C
Confidence            5567889999999998884     3333579999999886322110                                 0


Q ss_pred             CCCeeEEEEcCCCCEEEEEeCCCc-------------EEEEeCCCCE----EEEEEec-CCCcEEEEEeCCCC-EE-EEE
Q 043707          235 YDAVSCLSLNAEQGLLYSGSWDKT-------------LKVWRISDCK----CLESINA-HDDAINSVVAGFDS-LV-FTG  294 (347)
Q Consensus       235 ~~~V~~l~~~~~~~~l~s~s~dg~-------------i~vwdl~~~~----~~~~~~~-h~~~v~~i~~~~~~-~l-~s~  294 (347)
                      ......++|+ |++.|+.++.+..             |++|++.+..    ++..... |...+..+.|+||+ +| ++.
T Consensus       174 ~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~  252 (693)
T 3iuj_A          174 DVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISA  252 (693)
T ss_dssp             EEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEE
T ss_pred             CceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEE
Confidence            0112457899 9998888887743             9999997654    3433344 55567889999998 44 443


Q ss_pred             e---CCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEE
Q 043707          295 S---ADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYC  341 (347)
Q Consensus       295 ~---~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s  341 (347)
                      .   ..+.|+++|+.....     ....+..+....... |++++..|+.
T Consensus       253 ~~~~~~~~i~~~d~~~~~~-----~~~~l~~~~~~~~~~-~~~~g~~l~~  296 (693)
T 3iuj_A          253 ANSTSGNRLYVKDLSQENA-----PLLTVQGDLDADVSL-VDNKGSTLYL  296 (693)
T ss_dssp             ESSSSCCEEEEEETTSTTC-----CCEEEECSSSSCEEE-EEEETTEEEE
T ss_pred             ccCCCCcEEEEEECCCCCC-----ceEEEeCCCCceEEE-EeccCCEEEE
Confidence            3   235899999875432     122333444444444 5555554443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.48  E-value=1e-05  Score=73.51  Aligned_cols=181  Identities=12%  Similarity=0.123  Sum_probs=114.1

Q ss_pred             CC-EEEEecCCCcEEEEeCCCc------ceeee------c-CCCCeeEEEEeCCCCEEEEEeCC------CcEEEEecCC
Q 043707          133 GD-LLYTGSDSKNIRVWKNLKE------FSGFK------S-NSGLVKAIIITGDSNKIFTGHQD------GKIRIWKVSR  192 (347)
Q Consensus       133 ~~-~l~tg~~dg~I~vwd~~~~------~~~~~------~-h~~~V~~l~~sp~~~~l~s~~~D------g~I~vwd~~~  192 (347)
                      ++ ++++|..+++|+|+|....      .+.+.      . -...-..+...|+| .++++..+      |.|.+.|..+
T Consensus        95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T  173 (462)
T 2ece_A           95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYS  173 (462)
T ss_dssp             SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTT
T ss_pred             CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCC
Confidence            44 5666788899999996422      22221      0 11244567888999 77777666      7899999988


Q ss_pred             CCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEe------------------
Q 043707          193 KNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGS------------------  254 (347)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s------------------  254 (347)
                      .+..........                             -..--..+.|+|+++.+++..                  
T Consensus       174 ~~v~~~~~~~~~-----------------------------~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~  224 (462)
T 2ece_A          174 FEPLGKWEIDRG-----------------------------DQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKD  224 (462)
T ss_dssp             CCEEEECCSBCT-----------------------------TCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHH
T ss_pred             CeEEEEEccCCC-----------------------------CccccceEEECCCCCEEEEccCcCccccccccchhhhhh
Confidence            875443332211                             111223578899999999886                  


Q ss_pred             -CCCcEEEEeCCCCEEEEEEecCC--CcEEEEEe--CCCC-EEEE-Ee-----CCCcEEEEEcccCCccceeeeh-----
Q 043707          255 -WDKTLKVWRISDCKCLESINAHD--DAINSVVA--GFDS-LVFT-GS-----ADGTVKVWRRELQGKGTKHFLA-----  317 (347)
Q Consensus       255 -~dg~i~vwdl~~~~~~~~~~~h~--~~v~~i~~--~~~~-~l~s-~~-----~dg~I~vwd~~~~~~~~~~~~~-----  317 (347)
                       .+.+|.+||+.+++.+.++....  .....|.|  +|++ ++++ +-     .+++|.+|.... +.-.....+     
T Consensus       225 ~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-g~~~~~~vIdi~~~  303 (462)
T 2ece_A          225 RYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED-GKWNAEKVIEIPAE  303 (462)
T ss_dssp             HSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET-TEEEEEEEEEECCE
T ss_pred             ccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC-CceeEEEEEeCCCc
Confidence             36899999999999888887531  23445555  8987 4444 44     677888877653 210000000     


Q ss_pred             ---hhh-------hccCCcEEEEEEccCCCEEEEecC
Q 043707          318 ---QVL-------LKQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       318 ---~~~-------~~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                         ..+       .+-...+..|.+++||++|+++..
T Consensus       304 ~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnr  340 (462)
T 2ece_A          304 PLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLW  340 (462)
T ss_dssp             ECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEET
T ss_pred             cccccccccccccccCCCceeEEEECCCCCEEEEEeC
Confidence               000       001245789999999999998764

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.45  E-value=6.9e-06  Score=73.64  Aligned_cols=193  Identities=10%  Similarity=0.025  Sum_probs=114.5

Q ss_pred             cceeEeeeeccccEEEEeecCCEEEEec----------CCCcEEEEeCC--CcceeeecC-------CCCeeEEEEeCCC
Q 043707          113 NGLIGSIVRKEGHIYSLAASGDLLYTGS----------DSKNIRVWKNL--KEFSGFKSN-------SGLVKAIIITGDS  173 (347)
Q Consensus       113 ~~~i~~l~~h~~~V~~l~~~~~~l~tg~----------~dg~I~vwd~~--~~~~~~~~h-------~~~V~~l~~sp~~  173 (347)
                      .+.+.++..-..+-..+.+++++++.+.          .++.|.+||..  +....+...       ......++++|||
T Consensus        56 ~~v~~~i~vG~~P~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDG  135 (368)
T 1mda_H           56 GVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASS  135 (368)
T ss_dssp             TEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTS
T ss_pred             CeEEEEEeCCCCCceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCC
Confidence            4556666554445566778888887775          46889999965  334444432       1246689999999


Q ss_pred             CEEEEEeC--CCcEEE--EecCCCCCceeeeecc----cccccce-EEeccC----------------------------
Q 043707          174 NKIFTGHQ--DGKIRI--WKVSRKNPSVHKRVGS----LPTFKDY-VKSSVN----------------------------  216 (347)
Q Consensus       174 ~~l~s~~~--Dg~I~v--wd~~~~~~~~~~~~~~----~~~~~~~-~~~~~~----------------------------  216 (347)
                      ++++++..  +..|.+  +|..+   .....+..    .+..... +..+.+                            
T Consensus       136 k~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~v  212 (368)
T 1mda_H          136 ACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNC  212 (368)
T ss_dssp             SCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCB
T ss_pred             CEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeC
Confidence            99999875  467888  98865   11111100    0100000 000000                            


Q ss_pred             ---------CCe--------E--EEEeecceeee--ee-----------cCCCeeEEEEcCCCCEEEEEeC---------
Q 043707          217 ---------PKN--------Y--VEVRRNRNVLK--IR-----------HYDAVSCLSLNAEQGLLYSGSW---------  255 (347)
Q Consensus       217 ---------~~~--------~--~~~~~~~~~~~--~~-----------h~~~V~~l~~~~~~~~l~s~s~---------  255 (347)
                               ...        +  ++.........  ..           .......++++++++.++.+..         
T Consensus       213 g~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~  292 (368)
T 1mda_H          213 SSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAA  292 (368)
T ss_dssp             CSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSC
T ss_pred             CCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCccccc
Confidence                     000        0  01100000000  00           0011222789999988887643         


Q ss_pred             CCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC--EEEEEe-CCCcEEEEEcccCC
Q 043707          256 DKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGS-ADGTVKVWRRELQG  309 (347)
Q Consensus       256 dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~--~l~s~~-~dg~I~vwd~~~~~  309 (347)
                      ++.+.++|+.+.+.+..+.... ....|++++|+  ++++.. .++.|.++|+.+.+
T Consensus       293 ~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k  348 (368)
T 1mda_H          293 AENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             EEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             CCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence            2356699999999998887554 57899999997  566666 69999999998654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.45  E-value=3.9e-05  Score=64.73  Aligned_cols=191  Identities=10%  Similarity=0.075  Sum_probs=116.3

Q ss_pred             ceeEeeeecccc--EEEEeecCC-EEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707          114 GLIGSIVRKEGH--IYSLAASGD-LLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW  188 (347)
Q Consensus       114 ~~i~~l~~h~~~--V~~l~~~~~-~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw  188 (347)
                      +.+.++ .|...  ...|.++++ ++.+.+.+|.|+++|..  +....+......-..+++..+ +.....-.++.+.+|
T Consensus        44 ~Vv~~~-phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~-~Ly~ltw~~~~v~V~  121 (268)
T 3nok_A           44 HIIREY-PHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGE-RLYQLTWTEGLLFTW  121 (268)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSS-CEEEEESSSCEEEEE
T ss_pred             EEEEEE-cCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCC-EEEEEEccCCEEEEE
Confidence            345555 45443  467777666 55666778899999954  333333111112234555433 344444578899999


Q ss_pred             ecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCE
Q 043707          189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK  268 (347)
Q Consensus       189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~  268 (347)
                      |..+.+........                                 ..-..++  +++..|+.+..++.|.++|..+.+
T Consensus       122 D~~Tl~~~~ti~~~---------------------------------~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~  166 (268)
T 3nok_A          122 SGMPPQRERTTRYS---------------------------------GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFA  166 (268)
T ss_dssp             ETTTTEEEEEEECS---------------------------------SCCCCEE--EETTEEEEECSSSEEEEECTTTCC
T ss_pred             ECCcCcEEEEEeCC---------------------------------CceeEEe--cCCCEEEEECCCCEEEEEcCCCCe
Confidence            99887644333221                                 1112333  457788887778999999999999


Q ss_pred             EEEEEecCC-----CcEEEEEeCCCCEEEEEe-CCCcEEEEEcccCCccceeeehhhhh--------ccCCcEEEEEEcc
Q 043707          269 CLESINAHD-----DAINSVVAGFDSLVFTGS-ADGTVKVWRRELQGKGTKHFLAQVLL--------KQENAITALAVNQ  334 (347)
Q Consensus       269 ~~~~~~~h~-----~~v~~i~~~~~~~l~s~~-~dg~I~vwd~~~~~~~~~~~~~~~~~--------~h~~~V~~l~~~p  334 (347)
                      .+.++....     ..++.+.|. +|.|++.. .++.|.+.|.+++..... .....+.        ......+.|||+|
T Consensus       167 v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~-Idl~~L~~~~~~~~~~~~~vlNGIA~dp  244 (268)
T 3nok_A          167 LVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGV-IDASALTRAVAGQVTNPEAVLNGIAVEP  244 (268)
T ss_dssp             EEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEE-EECHHHHHHHTTTCCCTTCCEEEEEECT
T ss_pred             EEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEE-EECCCCcccccccccCcCCceEEEEEcC
Confidence            988886432     245677777 66555554 688999999986643111 1111111        1234678999999


Q ss_pred             CCCEEEEec
Q 043707          335 ESAVVYCGS  343 (347)
Q Consensus       335 ~~~~l~sgs  343 (347)
                      +++.|+..+
T Consensus       245 ~~~rlfVTG  253 (268)
T 3nok_A          245 GSGRIFMTG  253 (268)
T ss_dssp             TTCCEEEEE
T ss_pred             CCCEEEEeC
Confidence            875555544

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.44  E-value=1.2e-05  Score=78.45  Aligned_cols=81  Identities=16%  Similarity=0.114  Sum_probs=52.3

Q ss_pred             CCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhh-ccCCcEEEEEEcc
Q 043707          256 DKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLL-KQENAITALAVNQ  334 (347)
Q Consensus       256 dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~-~h~~~V~~l~~~p  334 (347)
                      +|+|+.||+.+++.+-+++.+...........+++++.++.||.|+.||.++++.      +..+. .+.....-+.|..
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~------lw~~~~~~~~~~~p~ty~~  527 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEK------LWEQPAASGVMAAPVTYSV  527 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE------EEEEECSSCCCSCCEEEEE
T ss_pred             ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCcc------ceeeeCCCCcccCceEEEE
Confidence            4789999999999988887554322222223456999999999999999987653      22222 2222223466677


Q ss_pred             CCC-EEEEe
Q 043707          335 ESA-VVYCG  342 (347)
Q Consensus       335 ~~~-~l~sg  342 (347)
                      +|+ ++++.
T Consensus       528 ~G~qyv~~~  536 (689)
T 1yiq_A          528 DGEQYVTFM  536 (689)
T ss_dssp             TTEEEEEEE
T ss_pred             CCEEEEEEE
Confidence            885 44433

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.38  E-value=5.8e-05  Score=64.22  Aligned_cols=100  Identities=13%  Similarity=0.080  Sum_probs=67.0

Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCC-----CcEEEEEeCCCCEEEEE-eCCCcEEEEEcccCCccceeee
Q 043707          243 LNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHD-----DAINSVVAGFDSLVFTG-SADGTVKVWRRELQGKGTKHFL  316 (347)
Q Consensus       243 ~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~-----~~v~~i~~~~~~~l~s~-~~dg~I~vwd~~~~~~~~~~~~  316 (347)
                      +.++++.|+++..+++|.++|..+.+.+..+....     ..++.+.|. ++.+++. ..++.|.+.|..++.. .....
T Consensus       112 lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V-~~~I~  189 (266)
T 2iwa_A          112 LATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTL-LGWIL  189 (266)
T ss_dssp             EEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCE-EEEEE
T ss_pred             EEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcE-EEEEE
Confidence            45577777777778999999999999888876332     136778887 6755544 4688999999986543 11111


Q ss_pred             hhhhh------cc--CCcEEEEEEccCCCEEEEecC
Q 043707          317 AQVLL------KQ--ENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       317 ~~~~~------~h--~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      ...+.      .+  ......|+|+|+++.|++++.
T Consensus       190 ~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk  225 (266)
T 2iwa_A          190 LPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK  225 (266)
T ss_dssp             CHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET
T ss_pred             CCCcccccccccccccCceEEEEEcCCCCEEEEECC
Confidence            11111      11  246799999999976666553

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.38  E-value=1.7e-05  Score=72.40  Aligned_cols=195  Identities=10%  Similarity=0.064  Sum_probs=117.2

Q ss_pred             ceeEeeeeccccEEEEeecCCEEEEec----------CCCcEEEEeCCCc--ceeeecC-------CCCeeEEEEeCCCC
Q 043707          114 GLIGSIVRKEGHIYSLAASGDLLYTGS----------DSKNIRVWKNLKE--FSGFKSN-------SGLVKAIIITGDSN  174 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~~~~~l~tg~----------~dg~I~vwd~~~~--~~~~~~h-------~~~V~~l~~sp~~~  174 (347)
                      +.+.++..-..+-..+++++++|+.+.          .++.|.++|....  ...+.--       ......++|+|+|+
T Consensus       110 ~vv~~I~vG~~Pgia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk  189 (426)
T 3c75_H          110 RILGMTDGGFLPHPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNK  189 (426)
T ss_dssp             EEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSS
T ss_pred             EEEEEEECCCCCceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCC
Confidence            345555443334456677888777775          4678999996533  3333211       13456789999999


Q ss_pred             EEEEEeC--CCcEEEEecCCCCCceeeeeccc----ccc-cceEEeccCCCeE---------------------------
Q 043707          175 KIFTGHQ--DGKIRIWKVSRKNPSVHKRVGSL----PTF-KDYVKSSVNPKNY---------------------------  220 (347)
Q Consensus       175 ~l~s~~~--Dg~I~vwd~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~---------------------------  220 (347)
                      +++.+..  ++.|.+.|+.+.+......+...    +.. ..++..+.++...                           
T Consensus       190 ~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~  269 (426)
T 3c75_H          190 NLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINH  269 (426)
T ss_dssp             EEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSC
T ss_pred             EEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeE
Confidence            9999874  57899999998875444333210    100 1111111111100                           


Q ss_pred             ----------EEEeecceeeeee------------------------cCCCeeEEEEcCCCCEEEEEeC----------C
Q 043707          221 ----------VEVRRNRNVLKIR------------------------HYDAVSCLSLNAEQGLLYSGSW----------D  256 (347)
Q Consensus       221 ----------~~~~~~~~~~~~~------------------------h~~~V~~l~~~~~~~~l~s~s~----------d  256 (347)
                                +..........+.                        .......++++++++.+++...          +
T Consensus       270 ~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s  349 (426)
T 3c75_H          270 PAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAAS  349 (426)
T ss_dssp             CEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCE
T ss_pred             eeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCC
Confidence                      0000000000000                        0011123688998887777642          3


Q ss_pred             CcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC--EEEEEe-CCCcEEEEEcccCC
Q 043707          257 KTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGS-ADGTVKVWRRELQG  309 (347)
Q Consensus       257 g~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~--~l~s~~-~dg~I~vwd~~~~~  309 (347)
                      +.|.+.|+.+.+.+.++.... ....|+|+||+  ++++.. .++.|.|+|+.+.+
T Consensus       350 ~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k  404 (426)
T 3c75_H          350 RFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE  404 (426)
T ss_dssp             EEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             CEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence            579999999999999987433 47889999997  577766 59999999998654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.36  E-value=1.5e-05  Score=69.53  Aligned_cols=146  Identities=8%  Similarity=0.075  Sum_probs=92.8

Q ss_pred             eecCCCCeeEEEEeCCCC-EEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecC
Q 043707          157 FKSNSGLVKAIIITGDSN-KIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHY  235 (347)
Q Consensus       157 ~~~h~~~V~~l~~sp~~~-~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  235 (347)
                      +..........+|+|+++ .+++...++.|..|+.. ++... .                                ..+.
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~~-~--------------------------------~~~~   85 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVDV-L--------------------------------LDAT   85 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEEE-E--------------------------------EESC
T ss_pred             EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEEE-E--------------------------------eCCC
Confidence            333445678899999988 56777788999999873 32110 0                                1244


Q ss_pred             CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecC----CCcEEEEEeCCCCEEEE-----EeC----------
Q 043707          236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH----DDAINSVVAGFDSLVFT-----GSA----------  296 (347)
Q Consensus       236 ~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h----~~~v~~i~~~~~~~l~s-----~~~----------  296 (347)
                      ..+..++++++++++++...++.|.+|+.. ++........    ...++.+++.++|.+..     |..          
T Consensus        86 ~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~  164 (305)
T 3dr2_A           86 AFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADP  164 (305)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCC
T ss_pred             CccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcccccccccccc
Confidence            568899999999977666566889999986 5432221111    13467899999984444     332          


Q ss_pred             ---CCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707          297 ---DGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       297 ---dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                         .+.|..||...+..  .     .+. .......++|+|+++.|+.+..+
T Consensus       165 ~~~~~~v~~~d~~~g~~--~-----~~~-~~~~p~gl~~spdg~~lyv~~~~  208 (305)
T 3dr2_A          165 ELAHHSVYRLPPDGSPL--Q-----RMA-DLDHPNGLAFSPDEQTLYVSQTP  208 (305)
T ss_dssp             SSSCEEEEEECSSSCCC--E-----EEE-EESSEEEEEECTTSSEEEEEECC
T ss_pred             ccCCCeEEEEcCCCCcE--E-----EEe-cCCCCcceEEcCCCCEEEEEecC
Confidence               24566666543221  1     111 33456889999999988776543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.35  E-value=3.9e-05  Score=64.72  Aligned_cols=98  Identities=10%  Similarity=0.083  Sum_probs=65.3

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCC-----CcEEEEEeCCCCEEEEEe-CCCcEEEEEcccCCccceeeehh
Q 043707          245 AEQGLLYSGSWDKTLKVWRISDCKCLESINAHD-----DAINSVVAGFDSLVFTGS-ADGTVKVWRRELQGKGTKHFLAQ  318 (347)
Q Consensus       245 ~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~-----~~v~~i~~~~~~~l~s~~-~dg~I~vwd~~~~~~~~~~~~~~  318 (347)
                      +++..|+.+..++.|.++|..+.+.+.++....     ..++.+.|. ++.|++.. .++.|.+.|.+++..... ....
T Consensus       134 ~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~-Id~~  211 (262)
T 3nol_A          134 HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGI-IDLN  211 (262)
T ss_dssp             ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEE-EECT
T ss_pred             cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEE-EECC
Confidence            466777776667889999999999888876432     335567776 66555554 688999999986543111 1111


Q ss_pred             hhhc-------cCCcEEEEEEccCCCEEEEecC
Q 043707          319 VLLK-------QENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       319 ~~~~-------h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      .+..       .....+.|||+|+++.|+..+.
T Consensus       212 ~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          212 GILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             TGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             cCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            1111       1245789999999877777664

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.35  E-value=4.3e-05  Score=67.30  Aligned_cols=144  Identities=8%  Similarity=-0.011  Sum_probs=90.2

Q ss_pred             cEEEEee--cCCEEEEecC------CCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEE-eCCCcEEEEecC--CC
Q 043707          125 HIYSLAA--SGDLLYTGSD------SKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTG-HQDGKIRIWKVS--RK  193 (347)
Q Consensus       125 ~V~~l~~--~~~~l~tg~~------dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-~~Dg~I~vwd~~--~~  193 (347)
                      .+.++.+  +|+++++...      .+.|+.++ ......+..+......++|+|+++.++.+ ..++.|.+||+.  ++
T Consensus       135 ~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~G  213 (326)
T 2ghs_A          135 RSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTG  213 (326)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTC
T ss_pred             CCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccC
Confidence            3555554  4666554432      24566666 33333333334467899999999876554 457899999986  33


Q ss_pred             -CCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEE
Q 043707          194 -NPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES  272 (347)
Q Consensus       194 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~  272 (347)
                       ............                           .....+..+++.+++.+.++...++.|.+||. +++.+..
T Consensus       214 l~~~~~~~~~~~~---------------------------~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~  265 (326)
T 2ghs_A          214 LPTGKAEVFIDST---------------------------GIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIAR  265 (326)
T ss_dssp             CBSSCCEEEEECT---------------------------TSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEE
T ss_pred             CcccCceEEEECC---------------------------CCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEE
Confidence             211100000000                           12234567899999987777766789999998 6777888


Q ss_pred             EecCCCcEEEEEeC-CCC-EEE-EEeCC
Q 043707          273 INAHDDAINSVVAG-FDS-LVF-TGSAD  297 (347)
Q Consensus       273 ~~~h~~~v~~i~~~-~~~-~l~-s~~~d  297 (347)
                      +..+...+.+++|. +++ .|+ +...+
T Consensus       266 i~~~~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          266 YEVPGKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             EECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             EECCCCCcEEEEEecCCCCEEEEEecCC
Confidence            88777789999997 775 444 44333

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.34  E-value=3.1e-05  Score=70.41  Aligned_cols=179  Identities=11%  Similarity=0.172  Sum_probs=110.1

Q ss_pred             ecCCEEEEecCC------CcEEEEeCC--CcceeeecC---CCCeeEEEEeCCCCEEEEEe-------------------
Q 043707          131 ASGDLLYTGSDS------KNIRVWKNL--KEFSGFKSN---SGLVKAIIITGDSNKIFTGH-------------------  180 (347)
Q Consensus       131 ~~~~~l~tg~~d------g~I~vwd~~--~~~~~~~~h---~~~V~~l~~sp~~~~l~s~~-------------------  180 (347)
                      ++| +++++..+      |.|.++|..  +.+..+..-   ...-+.+.|+|+++.+++..                   
T Consensus       147 pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~  225 (462)
T 2ece_A          147 PDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDR  225 (462)
T ss_dssp             SSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHH
T ss_pred             CCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhc
Confidence            567 77766555      789999954  334444321   12345688999999888884                   


Q ss_pred             CCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEE--cCCCCEEEEEe----
Q 043707          181 QDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSL--NAEQGLLYSGS----  254 (347)
Q Consensus       181 ~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~--~~~~~~l~s~s----  254 (347)
                      .+.+|.+||+.+++......++.                              .......+.|  +|+++++++++    
T Consensus       226 ~~d~V~v~D~~~~k~~~tI~vg~------------------------------~g~~P~~i~f~~~Pdg~~aYV~~e~~~  275 (462)
T 2ece_A          226 YGNRIHFWDLRKRKRIHSLTLGE------------------------------ENRMALELRPLHDPTKLMGFINMVVSL  275 (462)
T ss_dssp             SCCEEEEEETTTTEEEEEEESCT------------------------------TEEEEEEEEECSSTTCCEEEEEEEEET
T ss_pred             cCCEEEEEECCCCcEeeEEecCC------------------------------CCCccceeEeeECCCCCEEEEEEeeec
Confidence            46899999998764322222210                              0112334445  99999888877    


Q ss_pred             --CCCcEEEEeCCCCEE--EEEE--ecC----------------CCcEEEEEeCCCC-EEE-EEeCCCcEEEEEcccCCc
Q 043707          255 --WDKTLKVWRISDCKC--LESI--NAH----------------DDAINSVVAGFDS-LVF-TGSADGTVKVWRRELQGK  310 (347)
Q Consensus       255 --~dg~i~vwdl~~~~~--~~~~--~~h----------------~~~v~~i~~~~~~-~l~-s~~~dg~I~vwd~~~~~~  310 (347)
                        .+++|.+|....++.  ++.+  ...                ......|.+++|+ +|+ +.-..+.|.+||+.....
T Consensus       276 ~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~  355 (462)
T 2ece_A          276 KDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFK  355 (462)
T ss_dssp             TTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTS
T ss_pred             cCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCC
Confidence              466888877655431  1211  110                1346788999998 444 444588999999863322


Q ss_pred             cceeeehhhhhcc--------------CCcEEEEEEccCCCEEEEec
Q 043707          311 GTKHFLAQVLLKQ--------------ENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       311 ~~~~~~~~~~~~h--------------~~~V~~l~~~p~~~~l~sgs  343 (347)
                         ..+...+...              ......++++|||++|+++.
T Consensus       356 ---~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          356 ---PVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             ---CEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             ---cEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence               1112211111              11357899999999999886

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.25  E-value=0.00098  Score=57.90  Aligned_cols=209  Identities=11%  Similarity=0.073  Sum_probs=111.9

Q ss_pred             EeecCCEEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCC--cEEEEecCCCCCceeeeecc--c
Q 043707          129 LAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDG--KIRIWKVSRKNPSVHKRVGS--L  204 (347)
Q Consensus       129 l~~~~~~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg--~I~vwd~~~~~~~~~~~~~~--~  204 (347)
                      +..+++++++-..++.|..||.......+......+.++++.++++.+++.....  .|..+|..+++.........  .
T Consensus        39 ~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~  118 (306)
T 2p4o_A           39 SAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIF  118 (306)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSC
T ss_pred             ECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccc
Confidence            3345777777778899999986544433333345788999999998665554332  36666666665322211111  0


Q ss_pred             ccc------cceEEeccCCCeEEEEeecc--eeeee-----------ecCCCeeEEEEcCCCCEEEEEe-CCCcEEEEeC
Q 043707          205 PTF------KDYVKSSVNPKNYVEVRRNR--NVLKI-----------RHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRI  264 (347)
Q Consensus       205 ~~~------~~~~~~~~~~~~~~~~~~~~--~~~~~-----------~h~~~V~~l~~~~~~~~l~s~s-~dg~i~vwdl  264 (347)
                      +..      ...+........++.+....  .....           ........|  +++++.|+.+. ..++|.++|+
T Consensus       119 ~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~  196 (306)
T 2p4o_A          119 LNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPV  196 (306)
T ss_dssp             EEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEB
T ss_pred             cCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEe
Confidence            000      01122222222333332211  01110           111233445  77777666554 5678999998


Q ss_pred             CC-CEE--EEEEecCCCcEEEEEeCCCCEEE-EEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEc---cCCC
Q 043707          265 SD-CKC--LESINAHDDAINSVVAGFDSLVF-TGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVN---QESA  337 (347)
Q Consensus       265 ~~-~~~--~~~~~~h~~~v~~i~~~~~~~l~-s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~---p~~~  337 (347)
                      .. ++.  ...+.. ......+++.++|.|+ +....+.|.++|..  ++  . .....+.......++++|.   |+++
T Consensus       197 ~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~--G~--~-~~~~~~~~~~~~p~~~a~~g~~~d~~  270 (306)
T 2p4o_A          197 DSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD--RS--T-TIIAQAEQGVIGSTAVAFGQTEGDCT  270 (306)
T ss_dssp             CTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT--CC--E-EEEECGGGTCTTEEEEEECCSTTTTT
T ss_pred             CCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC--CC--E-EEEeecccccCCceEEEEecccCCCC
Confidence            64 321  112211 1234567888888444 44457889999875  22  1 1111222233568999998   8988


Q ss_pred             EEEEecCC
Q 043707          338 VVYCGSSD  345 (347)
Q Consensus       338 ~l~sgs~D  345 (347)
                      .|+.+...
T Consensus       271 ~LyVt~~~  278 (306)
T 2p4o_A          271 AIYVVTNG  278 (306)
T ss_dssp             EEEEEECT
T ss_pred             EEEEECCC
Confidence            77776654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.25  E-value=4.6e-05  Score=69.52  Aligned_cols=145  Identities=8%  Similarity=-0.004  Sum_probs=96.1

Q ss_pred             ecCCEEEEecC-C----CcEEEEeCCC--cceeeecCCCCeeEEEEeCCCCEEEEEe----------CCCcEEEEecCCC
Q 043707          131 ASGDLLYTGSD-S----KNIRVWKNLK--EFSGFKSNSGLVKAIIITGDSNKIFTGH----------QDGKIRIWKVSRK  193 (347)
Q Consensus       131 ~~~~~l~tg~~-d----g~I~vwd~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~~----------~Dg~I~vwd~~~~  193 (347)
                      ++++.++.... +    +.|.++|..+  .+..+..-..+  .++++|++++++.+.          .++.|.++|..+.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            35665555544 2    6999999653  34444433344  899999999888886          4678999999988


Q ss_pred             CCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC--CCcEEEEeCCCCEEEE
Q 043707          194 NPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW--DKTLKVWRISDCKCLE  271 (347)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--dg~i~vwdl~~~~~~~  271 (347)
                      +......+......                         ........+.|+||+++|+++..  ++.|.+.|+.+++.+.
T Consensus       160 ~vv~~I~v~g~~r~-------------------------~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~  214 (426)
T 3c75_H          160 LPIADIELPDAPRF-------------------------LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDR  214 (426)
T ss_dssp             CEEEEEEETTCCCC-------------------------CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred             cEEEEEECCCcccc-------------------------ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEE
Confidence            75444333200000                         01123456899999999999875  5789999999999998


Q ss_pred             EEecCCCcEEEEEeCCC--CEEEEEeCCCcEEEEEcc
Q 043707          272 SINAHDDAINSVVAGFD--SLVFTGSADGTVKVWRRE  306 (347)
Q Consensus       272 ~~~~h~~~v~~i~~~~~--~~l~s~~~dg~I~vwd~~  306 (347)
                      ++.....    ....|+  ..+++.+.||++.+.+..
T Consensus       215 ~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~  247 (426)
T 3c75_H          215 MLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFA  247 (426)
T ss_dssp             EEECCSE----EEEEEEETTEEEEEETTSSEEEEECC
T ss_pred             EEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECC
Confidence            8874321    222233  255566677887777773

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.23  E-value=2.3e-05  Score=68.63  Aligned_cols=200  Identities=16%  Similarity=0.161  Sum_probs=116.1

Q ss_pred             CCEEEEecCCCcEEEEeCC-CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccc------
Q 043707          133 GDLLYTGSDSKNIRVWKNL-KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLP------  205 (347)
Q Consensus       133 ~~~l~tg~~dg~I~vwd~~-~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~------  205 (347)
                      +..|+.++.++.|..+|.. +....+......+.++...+++. ++.++.++.|..+|.. ++...........      
T Consensus       107 ~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~  184 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASI  184 (330)
T ss_dssp             TTEEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE
T ss_pred             CCEEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEE
Confidence            6667777777888888754 44444444555566677776664 5667777888888877 5433222211100      


Q ss_pred             -cccceEEeccCCCeEEEEeecceeeee--ecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEE
Q 043707          206 -TFKDYVKSSVNPKNYVEVRRNRNVLKI--RHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINS  282 (347)
Q Consensus       206 -~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~  282 (347)
                       ....++...   ..+..+.......+.  .....+.++...+++. |+.++.++.|..+|. +++.+..+......+..
T Consensus       185 d~~g~l~v~t---~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~  259 (330)
T 3hxj_A          185 GKDGTIYFGS---DKVYAINPDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESS  259 (330)
T ss_dssp             CTTCCEEEES---SSEEEECTTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSC
T ss_pred             cCCCEEEEEe---CEEEEECCCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCcccc
Confidence             011122222   222222222122221  1234577888887765 556677888999984 66666666655554555


Q ss_pred             EEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          283 VVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       283 i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      +...+++.|..++.+|.|..+|.. +..      ..........+.++...+++. |..++.+|.
T Consensus       260 ~~~~~~g~l~v~t~~ggl~~~d~~-g~~------~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~  316 (330)
T 3hxj_A          260 PVIGNTDTIYFGSYDGHLYAINPD-GTE------KWNFETGSWIIATPVIDENGT-IYFGTRNGK  316 (330)
T ss_dssp             CEECTTSCEEEECTTCEEEEECTT-SCE------EEEEECSSCCCSCCEECTTCC-EEEECTTSC
T ss_pred             ceEcCCCeEEEecCCCCEEEECCC-CcE------EEEEEcCCccccceEEcCCCE-EEEEcCCCe
Confidence            666667888889999999999853 221      111222344566777777776 455666763

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.23  E-value=0.00028  Score=58.91  Aligned_cols=98  Identities=10%  Similarity=0.125  Sum_probs=64.8

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCC-----CcEEEEEeCCCCEEEEEe-CCCcEEEEEcccCCccceeeehh
Q 043707          245 AEQGLLYSGSWDKTLKVWRISDCKCLESINAHD-----DAINSVVAGFDSLVFTGS-ADGTVKVWRRELQGKGTKHFLAQ  318 (347)
Q Consensus       245 ~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~-----~~v~~i~~~~~~~l~s~~-~dg~I~vwd~~~~~~~~~~~~~~  318 (347)
                      +++..|+.+..++.|.++|..+.+.+.+++...     ..++.+.|. ++.|++.. .+..|.+.|.+++... ......
T Consensus       112 ~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~-~~idl~  189 (243)
T 3mbr_X          112 SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVV-AWIDLQ  189 (243)
T ss_dssp             ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEE-EEEECG
T ss_pred             eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEE-EEEECC
Confidence            456667777778999999999999988886432     345677776 56444444 6789999999865431 111111


Q ss_pred             hhh--------ccCCcEEEEEEccCCCEEEEecC
Q 043707          319 VLL--------KQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       319 ~~~--------~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      .+.        ......+.||++|+++.|+..+.
T Consensus       190 ~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          190 ALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             GGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             cCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            111        12346789999998877666553

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.18  E-value=7.2e-05  Score=72.79  Aligned_cols=78  Identities=15%  Similarity=0.104  Sum_probs=49.8

Q ss_pred             CcEEEEeCCCCEEEEEEecCCCcEEEEEeC-CCCEEEEEeCCCcEEEEEcccCCccceeeehhhhh-ccCCcEEEEEEcc
Q 043707          257 KTLKVWRISDCKCLESINAHDDAINSVVAG-FDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLL-KQENAITALAVNQ  334 (347)
Q Consensus       257 g~i~vwdl~~~~~~~~~~~h~~~v~~i~~~-~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~-~h~~~V~~l~~~p  334 (347)
                      |.|..||+.+++.+-+++.. ..+....+. .+++++.++.||.|++||+++++.      +..+. .+.....-+.|..
T Consensus       457 g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~------lw~~~~~~~~~~~p~~y~~  529 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK------LWEAPTGTGVVAAPSTYMV  529 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE------EEEEECSSCCCSCCEEEEE
T ss_pred             cEEEEEeCCCCcEEeecCCC-CCCcCcceEeCCCEEEEECCCCcEEEEECCCCce------eeeeeCCCCcccCCEEEEe
Confidence            78999999999998887633 233333333 345888899999999999987653      22221 2222223455667


Q ss_pred             CCCEEEE
Q 043707          335 ESAVVYC  341 (347)
Q Consensus       335 ~~~~l~s  341 (347)
                      +|+.+++
T Consensus       530 ~G~~~v~  536 (677)
T 1kb0_A          530 DGRQYVS  536 (677)
T ss_dssp             TTEEEEE
T ss_pred             CCEEEEE
Confidence            7754433

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.15  E-value=2.9e-05  Score=67.92  Aligned_cols=172  Identities=12%  Similarity=0.086  Sum_probs=98.2

Q ss_pred             cEEEEeec-CCEEEEecCCCcEEEEeCC-CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeec
Q 043707          125 HIYSLAAS-GDLLYTGSDSKNIRVWKNL-KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVG  202 (347)
Q Consensus       125 ~V~~l~~~-~~~l~tg~~dg~I~vwd~~-~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~  202 (347)
                      .+.++..+ ...|+.++.+  |..+|.. +....+...........+. ++ .|+.++.++.|..+|.. ++........
T Consensus        61 ~~~~~~~~~~g~l~v~t~~--l~~~d~~g~~~~~~~~~~~~~~~~~~~-~~-~l~v~t~~~~l~~~d~~-g~~~~~~~~~  135 (330)
T 3hxj_A           61 IECRPSIGKDGTIYFGSDK--VYAINPDGTEKWRFDTKKAIVSDFTIF-ED-ILYVTSMDGHLYAINTD-GTEKWRFKTK  135 (330)
T ss_dssp             EEECCEETTTTEECCSSCE--EEEECCCGGGGGGSCC-----CCEEEE-TT-EEEEECTTSEEEEECTT-SCEEEEEECS
T ss_pred             cccceEEecCCcEEEecCc--EEEECCCCcEEEEEECCCCcccCceEE-CC-EEEEEecCCEEEEEcCC-CCEEEEEcCC
Confidence            34555554 4566667665  8899844 3333443333333334444 66 67778888999999988 5544333222


Q ss_pred             ccc------cccceEEeccCCCeEEEEeecceeee--eecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEe
Q 043707          203 SLP------TFKDYVKSSVNPKNYVEVRRNRNVLK--IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN  274 (347)
Q Consensus       203 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~  274 (347)
                      ...      .....+........+..+.......+  ......+.++...+++.++ .++  +.|..+| .+++.+..+.
T Consensus       136 ~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~~~~~~~  211 (330)
T 3hxj_A          136 KAIYATPIVSEDGTIYVGSNDNYLYAINPDGTEKWRFKTNDAITSAASIGKDGTIY-FGS--DKVYAIN-PDGTEKWNFY  211 (330)
T ss_dssp             SCCCSCCEECTTSCEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTCCEE-EES--SSEEEEC-TTSCEEEEEC
T ss_pred             CceeeeeEEcCCCEEEEEcCCCEEEEECCCCCEeEEEecCCCceeeeEEcCCCEEE-EEe--CEEEEEC-CCCcEEEEEc
Confidence            110      00111111222222322222222111  1123456667777777644 444  7899999 7888777777


Q ss_pred             cCCCcEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 043707          275 AHDDAINSVVAGFDSLVFTGSADGTVKVWRR  305 (347)
Q Consensus       275 ~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~  305 (347)
                      .....+.++...+++.|..++.++.|..+|.
T Consensus       212 ~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~  242 (330)
T 3hxj_A          212 AGYWTVTRPAISEDGTIYVTSLDGHLYAINP  242 (330)
T ss_dssp             CSSCCCSCCEECTTSCEEEEETTTEEEEECT
T ss_pred             cCCcceeceEECCCCeEEEEcCCCeEEEECC
Confidence            6666788888888888888888888888875

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.13  E-value=0.00038  Score=62.25  Aligned_cols=172  Identities=10%  Similarity=0.113  Sum_probs=98.7

Q ss_pred             CCEEEEecCCCcEEEEeCCC--cceeeecCCCCe-----eEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecc--
Q 043707          133 GDLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLV-----KAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGS--  203 (347)
Q Consensus       133 ~~~l~tg~~dg~I~vwd~~~--~~~~~~~h~~~V-----~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~--  203 (347)
                      +..++.++.++.|+.+|...  ....+.......     ......  +..++.+..++.|..+|..+++.........  
T Consensus       143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~  220 (376)
T 3q7m_A          143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQAT  220 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC--
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCC
Confidence            45788888899999999543  333332211110     122222  3478888889999999999887654433221  


Q ss_pred             -------------cccc-cceEEeccCCCeEEEEee-cceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCE
Q 043707          204 -------------LPTF-KDYVKSSVNPKNYVEVRR-NRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK  268 (347)
Q Consensus       204 -------------~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~  268 (347)
                                   .+.. ...+........+..+.. .....+.........+..  ++..++.++.++.+..+|.++++
T Consensus       221 ~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~  298 (376)
T 3q7m_A          221 GSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGV  298 (376)
T ss_dssp             ---------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCCEEEEEE--ETTEEEEEETTCCEEEEETTTCC
T ss_pred             CCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCCCCCceE--ECCEEEEEcCCCeEEEEECCCCc
Confidence                         1110 111111111222222221 223333333333444444  36688888899999999999999


Q ss_pred             EEEEEecC-CCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCC
Q 043707          269 CLESINAH-DDAINSVVAGFDSLVFTGSADGTVKVWRRELQG  309 (347)
Q Consensus       269 ~~~~~~~h-~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~  309 (347)
                      .+-..... ...+..... .++.|+.++.+|.|.++|.+++.
T Consensus       299 ~~w~~~~~~~~~~~~~~~-~~~~l~v~~~~g~l~~~d~~tG~  339 (376)
T 3q7m_A          299 TLWTQSDLLHRLLTSPVL-YNGNLVVGDSEGYLHWINVEDGR  339 (376)
T ss_dssp             EEEEECTTTTSCCCCCEE-ETTEEEEECTTSEEEEEETTTCC
T ss_pred             EEEeecccCCCcccCCEE-ECCEEEEEeCCCeEEEEECCCCc
Confidence            87766522 222222222 25688899999999999998654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.12  E-value=2.6e-07  Score=83.29  Aligned_cols=131  Identities=15%  Similarity=0.137  Sum_probs=65.8

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEE
Q 043707          172 DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLY  251 (347)
Q Consensus       172 ~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~  251 (347)
                      ++..+++++.||.|+.||..+++.......                                  ..+.+..+..++..++
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~----------------------------------~~~~s~p~~~~g~~~v   53 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE----------------------------------DPVLQVPTHVEEPAFL   53 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC----------------------------------CCSCCCC-----CCEE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC----------------------------------CCceecceEcCCCEEE
Confidence            466999999999999999999875433221                                  2222333345666778


Q ss_pred             EEeCCCcEEEEeCCCCEEEEEEecCCC-cEE-EEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEE
Q 043707          252 SGSWDKTLKVWRISDCKCLESINAHDD-AIN-SVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITA  329 (347)
Q Consensus       252 s~s~dg~i~vwdl~~~~~~~~~~~h~~-~v~-~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~  329 (347)
                      +++.||.|+.||.++++.+..+..+.. .+. +.....++.|++++.|+.|+.||.+++..      ...+..+.    .
T Consensus        54 ~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~------~w~~~~~~----~  123 (369)
T 2hz6_A           54 PDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEK------QQTLSSAF----A  123 (369)
T ss_dssp             ECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC-----------------------
T ss_pred             EeCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcE------EEEecCCC----c
Confidence            888999999999999988766654321 111 11112356788888999999999986543      22222222    2


Q ss_pred             EEEccCCCEEEEecCCC
Q 043707          330 LAVNQESAVVYCGSSDG  346 (347)
Q Consensus       330 l~~~p~~~~l~sgs~DG  346 (347)
                      ..++|++..|++++.||
T Consensus       124 ~~~~p~~~~v~~~~~dg  140 (369)
T 2hz6_A          124 DSLSPSTSLLYLGRTEY  140 (369)
T ss_dssp             ---------EEEEEEEE
T ss_pred             ccccccCCEEEEEecCC
Confidence            34556777888777654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.07  E-value=0.001  Score=58.19  Aligned_cols=180  Identities=9%  Similarity=0.075  Sum_probs=105.2

Q ss_pred             EEeecCCEEEEecCCCcEEEEeCCC-cceeeec--------------------CCCCeeEEEEeC-CCCEEEEEeCCCcE
Q 043707          128 SLAASGDLLYTGSDSKNIRVWKNLK-EFSGFKS--------------------NSGLVKAIIITG-DSNKIFTGHQDGKI  185 (347)
Q Consensus       128 ~l~~~~~~l~tg~~dg~I~vwd~~~-~~~~~~~--------------------h~~~V~~l~~sp-~~~~l~s~~~Dg~I  185 (347)
                      ++..++++++++..++.|..|+... .+..+..                    ....+.+|++.+ ++ .|+.+...+.|
T Consensus        25 ~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~v~d~~~~i  103 (322)
T 2fp8_A           25 TFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLYIVDCYYHL  103 (322)
T ss_dssp             ECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEEEEETTTEE
T ss_pred             EEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCC-cEEEEECCCCE
Confidence            3445567778888888999998543 2333221                    113578999998 55 56666555557


Q ss_pred             EEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC-CCCEEEEEeC---------
Q 043707          186 RIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA-EQGLLYSGSW---------  255 (347)
Q Consensus       186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~---------  255 (347)
                      ..+|..++........  ..                     .     ........+++.+ +++++++-..         
T Consensus       104 ~~~d~~~g~~~~~~~~--~~---------------------~-----~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~  155 (322)
T 2fp8_A          104 SVVGSEGGHATQLATS--VD---------------------G-----VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQ  155 (322)
T ss_dssp             EEECTTCEECEEEESE--ET---------------------T-----EECSCEEEEEECTTTCCEEEEESCSSCCTTCHH
T ss_pred             EEEeCCCCEEEEeccc--CC---------------------C-----CcccccceEEEecCCCEEEEECCcccccccccc
Confidence            8887664421111000  00                     0     0123466788999 8877666432         


Q ss_pred             --------CCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEE-eCCCcEEEEEcccCCccceeeehhhhhccCC
Q 043707          256 --------DKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTG-SADGTVKVWRRELQGKGTKHFLAQVLLKQEN  325 (347)
Q Consensus       256 --------dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~-~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~  325 (347)
                              ++.|..||..+++...... .-...+.|++++++ .|+.+ ...+.|.+|++......... ....+   ..
T Consensus       156 ~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~-~~~~~---~g  230 (322)
T 2fp8_A          156 QIMDTSDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAE-VLVKI---PN  230 (322)
T ss_dssp             HHHHHTCCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEE-EEEEC---SS
T ss_pred             eehcccCCCceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccc-eEEeC---CC
Confidence                    3678899987776433222 12335678999997 45544 56789999998742111111 11111   22


Q ss_pred             cEEEEEEccCCCEEEEe
Q 043707          326 AITALAVNQESAVVYCG  342 (347)
Q Consensus       326 ~V~~l~~~p~~~~l~sg  342 (347)
                       ...|++.++|++.++.
T Consensus       231 -P~gi~~d~~G~l~va~  246 (322)
T 2fp8_A          231 -PGNIKRNADGHFWVSS  246 (322)
T ss_dssp             -EEEEEECTTSCEEEEE
T ss_pred             -CCCeEECCCCCEEEEe
Confidence             6788899988766654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.06  E-value=0.00015  Score=65.01  Aligned_cols=138  Identities=14%  Similarity=0.154  Sum_probs=89.9

Q ss_pred             CCEEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEE
Q 043707          133 GDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVK  212 (347)
Q Consensus       133 ~~~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~  212 (347)
                      +..++.++.++.|..+|.................+...  +..++.++.++.|..+|..+++........          
T Consensus       239 ~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~----------  306 (376)
T 3q7m_A          239 NGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIVD--GNRIYLVDQNDRVMALTIDGGVTLWTQSDL----------  306 (376)
T ss_dssp             TTEEEEECTTSCEEEEETTTCCEEEEECCCCEEEEEEE--TTEEEEEETTCCEEEEETTTCCEEEEECTT----------
T ss_pred             CCEEEEEecCcEEEEEECCCCcEEeeccCCCCCCceEE--CCEEEEEcCCCeEEEEECCCCcEEEeeccc----------
Confidence            55677788888999998654333333333344455543  458888888999999999888643222100          


Q ss_pred             eccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEEE
Q 043707          213 SSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVF  292 (347)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l~  292 (347)
                                           ....+.....  .+..|+.++.+|.+.++|.++++.+..+......+.......++.|+
T Consensus       307 ---------------------~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~~l~  363 (376)
T 3q7m_A          307 ---------------------LHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLL  363 (376)
T ss_dssp             ---------------------TTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEETTEEE
T ss_pred             ---------------------CCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEECCEEE
Confidence                                 0111111222  24688899999999999999999988877644333322112367889


Q ss_pred             EEeCCCcEEEEEc
Q 043707          293 TGSADGTVKVWRR  305 (347)
Q Consensus       293 s~~~dg~I~vwd~  305 (347)
                      .++.+|.|..|+.
T Consensus       364 v~~~~G~l~~~~~  376 (376)
T 3q7m_A          364 IQAKDGTVYSITR  376 (376)
T ss_dssp             EEBTTSCEEEEEC
T ss_pred             EEeCCCEEEEEeC
Confidence            9999999999873

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.02  E-value=0.00093  Score=56.69  Aligned_cols=145  Identities=6%  Similarity=0.032  Sum_probs=89.0

Q ss_pred             CCeeEEEEeCCCCEEEE-EeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeE
Q 043707          162 GLVKAIIITGDSNKIFT-GHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSC  240 (347)
Q Consensus       162 ~~V~~l~~sp~~~~l~s-~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  240 (347)
                      ..+.+++|++++..|+. -...+.|.+++.........  ..                              ........
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~--~~------------------------------~~~~~p~~   83 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTI--IR------------------------------QDLGSPEG   83 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEE--EC------------------------------TTCCCEEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEE--EE------------------------------CCCCCccE
Confidence            45789999996555554 44678999999876532110  00                              12245788


Q ss_pred             EEEcCCCCEEEEEe-CCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCC-CEEEEEeC---CCcEEEEEcccCCccceee
Q 043707          241 LSLNAEQGLLYSGS-WDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSA---DGTVKVWRRELQGKGTKHF  315 (347)
Q Consensus       241 l~~~~~~~~l~s~s-~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~-~~l~s~~~---dg~I~vwd~~~~~~~~~~~  315 (347)
                      +++++++..|+.+. ..+.|.++++........+.........++++|+ +.|+.+..   .+.|..+++.....  . .
T Consensus        84 ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~--~-~  160 (267)
T 1npe_A           84 IALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR--R-I  160 (267)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC--E-E
T ss_pred             EEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc--E-E
Confidence            99999766555554 4678999998643222222222245789999985 66555543   46888888752211  1 1


Q ss_pred             ehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707          316 LAQVLLKQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       316 ~~~~~~~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      ..   .........++++++++.|+.+..
T Consensus       161 ~~---~~~~~~P~gia~d~~~~~lyv~d~  186 (267)
T 1npe_A          161 LA---QDNLGLPNGLTFDAFSSQLCWVDA  186 (267)
T ss_dssp             EE---CTTCSCEEEEEEETTTTEEEEEET
T ss_pred             EE---ECCCCCCcEEEEcCCCCEEEEEEC
Confidence            11   112346789999998877766543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.02  E-value=3.8e-05  Score=72.25  Aligned_cols=201  Identities=10%  Similarity=0.032  Sum_probs=116.9

Q ss_pred             ecCCEEEEec------------------CCCcEEEEeCCCcc--eeeecCCCCeeEEEEeCCCCEEEEEeCCC-------
Q 043707          131 ASGDLLYTGS------------------DSKNIRVWKNLKEF--SGFKSNSGLVKAIIITGDSNKIFTGHQDG-------  183 (347)
Q Consensus       131 ~~~~~l~tg~------------------~dg~I~vwd~~~~~--~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg-------  183 (347)
                      ++++++++++                  .++.+.+.|.....  ..+.- .+.-..++++|+|+++++.+.+.       
T Consensus       145 p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~V-gg~pd~~~~spdGk~~~vt~~~se~~~~i~  223 (595)
T 1fwx_A          145 PRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLP  223 (595)
T ss_dssp             SBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHH
T ss_pred             CCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEe-CCCccceEECCCCCEEEEEecCcccCcchh
Confidence            6788888874                  23467777765432  22221 12446788999999999888663       


Q ss_pred             --------cEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEee--cce-eeeeecCCCeeEEEEcCCCCEEEE
Q 043707          184 --------KIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRR--NRN-VLKIRHYDAVSCLSLNAEQGLLYS  252 (347)
Q Consensus       184 --------~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~h~~~V~~l~~~~~~~~l~s  252 (347)
                              .|.+.|......       ..+.......   +...+++...  ... ...+.-.....++.++|||+++++
T Consensus       224 ~~~~~~~d~v~V~~~~~~~~-------~v~~Gk~~~i---~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V  293 (595)
T 1fwx_A          224 EMTAAEMDHIVVFNIAEIEK-------AIAAGDYQEL---NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCV  293 (595)
T ss_dssp             HHTCCSEEEEEEEEHHHHHH-------HHHHTCSEEE---TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEE
T ss_pred             hccccccceEEEeeccceeE-------eccCCCeeEE---CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEE
Confidence                    355555432211       0111111111   2233334433  112 223334456778999999998887


Q ss_pred             EeC-CCcEEEEeCCCCE------------EEEEEecCCCcEEEEEeCCCCEEE-EEeCCCcEEEEEcccCCc---c-cee
Q 043707          253 GSW-DKTLKVWRISDCK------------CLESINAHDDAINSVVAGFDSLVF-TGSADGTVKVWRRELQGK---G-TKH  314 (347)
Q Consensus       253 ~s~-dg~i~vwdl~~~~------------~~~~~~~h~~~v~~i~~~~~~~l~-s~~~dg~I~vwd~~~~~~---~-~~~  314 (347)
                      ++. +.+|.++|+.+.+            .+..+.. ......++|+++|.++ +.--|++|.+||+....+   + ...
T Consensus       294 ~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~  372 (595)
T 1fwx_A          294 AGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVD  372 (595)
T ss_dssp             ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCC
T ss_pred             eCCCCCeEEEEECcccccccccccCcccceEEEcCC-CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccc
Confidence            764 7899999998653            3344432 3457889999999444 566799999999975210   0 011


Q ss_pred             eehhhhhccCCc-----EEEEEEccCCCEEEEec
Q 043707          315 FLAQVLLKQENA-----ITALAVNQESAVVYCGS  343 (347)
Q Consensus       315 ~~~~~~~~h~~~-----V~~l~~~p~~~~l~sgs  343 (347)
                      ..+..+..|-.+     -..+.++|||++|+++.
T Consensus       373 ~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N  406 (595)
T 1fwx_A          373 PIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  406 (595)
T ss_dssp             CEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             eeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence            233444444322     12335689999999864

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.00  E-value=0.00035  Score=59.40  Aligned_cols=151  Identities=9%  Similarity=-0.038  Sum_probs=100.3

Q ss_pred             EEeecCCEE-EEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeeccc
Q 043707          128 SLAASGDLL-YTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSL  204 (347)
Q Consensus       128 ~l~~~~~~l-~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~  204 (347)
                      .+.++++.| ++.-.++.|.++|..  +.+..+..-..  ....++++++.++.+..++.|.++|..+.+......+...
T Consensus        70 Gi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~  147 (266)
T 2iwa_A           70 GLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN  147 (266)
T ss_dssp             EEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET
T ss_pred             EEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC
Confidence            445556544 445567899999965  33444432211  2234566787777777889999999988765444433211


Q ss_pred             ccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecC--------
Q 043707          205 PTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH--------  276 (347)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h--------  276 (347)
                      +                           ..-..++.+.|. ++.+++..-.++.|.+.|..+++.+..+...        
T Consensus       148 ~---------------------------~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~  199 (266)
T 2iwa_A          148 G---------------------------HRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLID  199 (266)
T ss_dssp             T---------------------------EECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHH
T ss_pred             C---------------------------cccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCccccccc
Confidence            0                           011235677777 6644444445789999999999999988642        


Q ss_pred             -----CCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccC
Q 043707          277 -----DDAINSVVAGFDS--LVFTGSADGTVKVWRRELQ  308 (347)
Q Consensus       277 -----~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~  308 (347)
                           ....+.|+++|++  +++++...+.|.+.++...
T Consensus       200 ~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          200 EGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             TTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             ccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence                 1356899999987  7778888999999998743

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.99  E-value=9.1e-05  Score=72.07  Aligned_cols=72  Identities=14%  Similarity=0.107  Sum_probs=49.0

Q ss_pred             CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCC-cEEEEEeCCCC--EEEEEeC---------------
Q 043707          235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDD-AINSVVAGFDS--LVFTGSA---------------  296 (347)
Q Consensus       235 ~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~-~v~~i~~~~~~--~l~s~~~---------------  296 (347)
                      ...+....+..++.+++.++.||.+++||+++++.+.++..... ...-+.+..+|  ++++.+.               
T Consensus       476 ~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~  555 (677)
T 1kb0_A          476 VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQ  555 (677)
T ss_dssp             SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCC
T ss_pred             CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccC
Confidence            33444455666788999999999999999999999999975432 22334555666  4444222               


Q ss_pred             -CCcEEEEEcc
Q 043707          297 -DGTVKVWRRE  306 (347)
Q Consensus       297 -dg~I~vwd~~  306 (347)
                       .+.+.+|.+.
T Consensus       556 ~~~~l~~f~l~  566 (677)
T 1kb0_A          556 GPGTVYTFVVG  566 (677)
T ss_dssp             CCCEEEEEEET
T ss_pred             CCCeEEEEecc
Confidence             4677777775

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.91  E-value=0.0051  Score=51.83  Aligned_cols=200  Identities=11%  Similarity=0.054  Sum_probs=117.5

Q ss_pred             eeeeccccEEEEeec--CC-EEEEecCCCcEEEEeCCCc-ceeee-cCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCC
Q 043707          118 SIVRKEGHIYSLAAS--GD-LLYTGSDSKNIRVWKNLKE-FSGFK-SNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSR  192 (347)
Q Consensus       118 ~l~~h~~~V~~l~~~--~~-~l~tg~~dg~I~vwd~~~~-~~~~~-~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~  192 (347)
                      .+.+-.+.+..++++  ++ ++++...++.|...|.... .+.+. .-......|++.+++.++++.-.++.+.++++..
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~  100 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP  100 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence            344444567777765  44 5555777888888886533 22221 1124688999999887767766778899998876


Q ss_pred             CCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC---CCEE
Q 043707          193 KNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS---DCKC  269 (347)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~---~~~~  269 (347)
                      ...........++.                       ...........|+|+|.++.|+++.......||.++   ..+.
T Consensus       101 ~~~i~~~~~~~~~~-----------------------~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~  157 (255)
T 3qqz_A          101 NSEVKILKKIKIPL-----------------------QESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNE  157 (255)
T ss_dssp             TCCEEEEEEEECCC-----------------------SSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSC
T ss_pred             CCeeeeeeeecccc-----------------------ccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCc
Confidence            54311111000000                       001245567899999998777777765555555553   1111


Q ss_pred             EEEEe-------cCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhc---cCCcEEEEEEccCCC
Q 043707          270 LESIN-------AHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLK---QENAITALAVNQESA  337 (347)
Q Consensus       270 ~~~~~-------~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~---h~~~V~~l~~~p~~~  337 (347)
                      +..+.       .+...+..++++|..  +++.....+.|.++|.... ......+..-..+   --.....|+|.++|+
T Consensus       158 l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~  236 (255)
T 3qqz_A          158 LHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN  236 (255)
T ss_dssp             CEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCC
T ss_pred             eeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCC
Confidence            22221       123356889999875  6667778889999997622 1111111111111   123678999999998


Q ss_pred             EEEE
Q 043707          338 VVYC  341 (347)
Q Consensus       338 ~l~s  341 (347)
                      +.++
T Consensus       237 lyIv  240 (255)
T 3qqz_A          237 IYIV  240 (255)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5555

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.83  E-value=0.0048  Score=61.05  Aligned_cols=192  Identities=11%  Similarity=0.208  Sum_probs=117.8

Q ss_pred             ccEEEEeecC-CEEEEecCCCcEEEEeCCCc-ceeeec-------CCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 043707          124 GHIYSLAASG-DLLYTGSDSKNIRVWKNLKE-FSGFKS-------NSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKN  194 (347)
Q Consensus       124 ~~V~~l~~~~-~~l~tg~~dg~I~vwd~~~~-~~~~~~-------h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~  194 (347)
                      ..|.++..+. ..|..|+.++-|..|+.... +..+..       ....|.++...++|+ |..|..++-|..||..++.
T Consensus       310 ~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~  388 (795)
T 4a2l_A          310 RSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQR  388 (795)
T ss_dssp             SCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCC
T ss_pred             CcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCc
Confidence            3577877653 35666777777888874322 222211       234699999888874 5567777778889887654


Q ss_pred             CceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEe
Q 043707          195 PSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN  274 (347)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~  274 (347)
                      ..........+                       . ..-....|.++...+++.+|..|+.++.|.+||..+++...-..
T Consensus       389 ~~~~~~~~~~~-----------------------~-~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~  444 (795)
T 4a2l_A          389 FTSYTLQEDES-----------------------A-RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQ  444 (795)
T ss_dssp             EEEECCC------------------------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECT
T ss_pred             EEEEecCCCCc-----------------------c-cCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeec
Confidence            21111000000                       0 00023568899988888867778887889999988776433221


Q ss_pred             ----cCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhh----hccCCcEEEEEEccCCCEEEEecCCC
Q 043707          275 ----AHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVL----LKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       275 ----~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~----~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                          .....|.++...+++.|..|+. +-|.+||.....-    ......    ......|.++...++|.+.+.+. +|
T Consensus       445 ~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~G  518 (795)
T 4a2l_A          445 RNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSF----TTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EG  518 (795)
T ss_dssp             TTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEE----EECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SC
T ss_pred             CCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeE----EEccccccccccCCceEEEEEECCCCCEEEEeC-Cc
Confidence                2345789999888886666666 4588888764321    111110    11235799999999888766554 44

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.78  E-value=0.00057  Score=67.32  Aligned_cols=150  Identities=15%  Similarity=0.049  Sum_probs=82.9

Q ss_pred             EEEe-ecCCEEEEe-cCCC----cEEEEeCCCc-ceeeecC-CCCeeEEEEeCCCCEEEEEeCCC-----cEEEEecCCC
Q 043707          127 YSLA-ASGDLLYTG-SDSK----NIRVWKNLKE-FSGFKSN-SGLVKAIIITGDSNKIFTGHQDG-----KIRIWKVSRK  193 (347)
Q Consensus       127 ~~l~-~~~~~l~tg-~~dg----~I~vwd~~~~-~~~~~~h-~~~V~~l~~sp~~~~l~s~~~Dg-----~I~vwd~~~~  193 (347)
                      .+++ ++|++|+-+ +.+|    .|+++|+... .. +..+ ......++|+||++.|+....|.     .|.++++.++
T Consensus       179 ~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~  257 (751)
T 2xe4_A          179 VKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-IADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKL  257 (751)
T ss_dssp             EEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-CCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSC
T ss_pred             eEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-CCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCC
Confidence            3566 778876644 2222    5999996543 21 1111 11234688999998888777652     4667777654


Q ss_pred             CCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC---CCcEEEEeCCCC--E
Q 043707          194 NPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW---DKTLKVWRISDC--K  268 (347)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---dg~i~vwdl~~~--~  268 (347)
                      .........                             .........+.|+||+++|+..+.   ...|.++|+.++  +
T Consensus       258 ~~~~~lv~~-----------------------------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~  308 (751)
T 2xe4_A          258 QSEDVCLYE-----------------------------EHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAH  308 (751)
T ss_dssp             GGGCEEEEE-----------------------------CCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTC
T ss_pred             chhcEEEEe-----------------------------cCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCC
Confidence            311000000                             012234567889999998877653   345888898765  2


Q ss_pred             E-EEEE-ecCCCcEEEEEeCCCCE-EEEEeCC--C--cEEEEEcc
Q 043707          269 C-LESI-NAHDDAINSVVAGFDSL-VFTGSAD--G--TVKVWRRE  306 (347)
Q Consensus       269 ~-~~~~-~~h~~~v~~i~~~~~~~-l~s~~~d--g--~I~vwd~~  306 (347)
                      . +..+ .........+.|+.++. ++....+  +  .|..+++.
T Consensus       309 ~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~  353 (751)
T 2xe4_A          309 NTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRG  353 (751)
T ss_dssp             CCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETT
T ss_pred             ceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCC
Confidence            2 1333 33345556666555554 4444443  3  55555554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.77  E-value=0.00026  Score=69.03  Aligned_cols=54  Identities=19%  Similarity=0.159  Sum_probs=39.6

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcE-EEEEeCCCC--EEEEE
Q 043707          241 LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAI-NSVVAGFDS--LVFTG  294 (347)
Q Consensus       241 l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v-~~i~~~~~~--~l~s~  294 (347)
                      -.+...+.+++.++.||.++.||.++++.+.+++.....+ .-+.|..+|  ++++.
T Consensus       480 g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~  536 (689)
T 1yiq_A          480 GTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFM  536 (689)
T ss_dssp             CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             ccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEE
Confidence            3455578899999999999999999999999887553322 335566677  55543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.75  E-value=0.014  Score=49.19  Aligned_cols=150  Identities=13%  Similarity=0.095  Sum_probs=91.8

Q ss_pred             cEEEEeec--CC-EEEEecCCCcEEEEeCCCc-ceeee-cCCCCeeEEEEeCCCCEEEEE-eCCCcEEEEecCCCCCcee
Q 043707          125 HIYSLAAS--GD-LLYTGSDSKNIRVWKNLKE-FSGFK-SNSGLVKAIIITGDSNKIFTG-HQDGKIRIWKVSRKNPSVH  198 (347)
Q Consensus       125 ~V~~l~~~--~~-~l~tg~~dg~I~vwd~~~~-~~~~~-~h~~~V~~l~~sp~~~~l~s~-~~Dg~I~vwd~~~~~~~~~  198 (347)
                      ....+.++  ++ ++++-..++.|.+++.... ...+. ........+++.+++..|+.+ ...+.|.+++++.......
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~  116 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL  116 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence            34455553  44 5555566789999986533 22222 222468899999965555544 5567899998865421110


Q ss_pred             eeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCC---CcEEEEeCCCCEEEEEEe-
Q 043707          199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWD---KTLKVWRISDCKCLESIN-  274 (347)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d---g~i~vwdl~~~~~~~~~~-  274 (347)
                        ..                              ........++++|++..|+.+...   +.|..+++.. +....+. 
T Consensus       117 --~~------------------------------~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~  163 (267)
T 1npe_A          117 --FD------------------------------TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQ  163 (267)
T ss_dssp             --EC------------------------------SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEEC
T ss_pred             --EE------------------------------CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEE
Confidence              00                              012346789999976666666543   6788888753 3233332 


Q ss_pred             cCCCcEEEEEeCCCC-EE-EEEeCCCcEEEEEccc
Q 043707          275 AHDDAINSVVAGFDS-LV-FTGSADGTVKVWRREL  307 (347)
Q Consensus       275 ~h~~~v~~i~~~~~~-~l-~s~~~dg~I~vwd~~~  307 (347)
                      ..-.....+++++++ .| ++-...+.|.++|...
T Consensus       164 ~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g  198 (267)
T 1npe_A          164 DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ  198 (267)
T ss_dssp             TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE
T ss_pred             CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC
Confidence            233457889999864 44 4555678999999863

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.74  E-value=0.0015  Score=61.40  Aligned_cols=201  Identities=11%  Similarity=0.012  Sum_probs=108.5

Q ss_pred             cCCEEEEec-CCCcEEEEeCCC--cceeeec-CCCCeeEEEE-e-CCCCEEEEEe------------------CCCcEEE
Q 043707          132 SGDLLYTGS-DSKNIRVWKNLK--EFSGFKS-NSGLVKAIII-T-GDSNKIFTGH------------------QDGKIRI  187 (347)
Q Consensus       132 ~~~~l~tg~-~dg~I~vwd~~~--~~~~~~~-h~~~V~~l~~-s-p~~~~l~s~~------------------~Dg~I~v  187 (347)
                      +|++|+... .++.|.+.|+..  ..+.+.- ....+..+++ . |+++++++++                  .++.+.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            677666654 456799998654  2332222 2345888898 5 9999998885                  3457888


Q ss_pred             EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecc-eeeee---ecC--CCeeEE------EEcCCCCEEEEEeC
Q 043707          188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNR-NVLKI---RHY--DAVSCL------SLNAEQGLLYSGSW  255 (347)
Q Consensus       188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~h~--~~V~~l------~~~~~~~~l~s~s~  255 (347)
                      .|..+.+......++..|   +.+....++...+...... ....+   ...  +.|..+      .+.++|+.+..   
T Consensus       180 ID~~t~~v~~qI~Vgg~p---d~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i---  253 (595)
T 1fwx_A          180 VDADKWEVAWQVLVSGNL---DNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL---  253 (595)
T ss_dssp             EETTTTEEEEEEEESSCC---CCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE---
T ss_pred             EECCCCeEEEEEEeCCCc---cceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE---
Confidence            888877655554443322   2222222222222221111 00000   000  001111      11223433332   


Q ss_pred             CCcEEEEeCCC--CEE-EEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCcc------ceeeehhhhhccC
Q 043707          256 DKTLKVWRISD--CKC-LESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKG------TKHFLAQVLLKQE  324 (347)
Q Consensus       256 dg~i~vwdl~~--~~~-~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~------~~~~~~~~~~~h~  324 (347)
                       +.+.|.|.++  ++. +..+.... ...++.++|||  .++++..+.+|.++|+......      ......... .-.
T Consensus       254 -~~V~VID~~~~~~~~~~~~Ipvg~-~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG  330 (595)
T 1fwx_A          254 -NGVKVVDGRKEASSLFTRYIPIAN-NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELG  330 (595)
T ss_dssp             -TTEEEEECSGGGCCSSEEEEEEES-SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCC
T ss_pred             -CcEEEEeCcccCCceeEEEEecCC-CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCC
Confidence             4589999987  555 55555332 45678999999  5556668999999999843210      000011111 123


Q ss_pred             CcEEEEEEccCCCEEEEe
Q 043707          325 NAITALAVNQESAVVYCG  342 (347)
Q Consensus       325 ~~V~~l~~~p~~~~l~sg  342 (347)
                      .....++|+|+| .+++.
T Consensus       331 ~gP~h~aF~~dG-~aY~t  347 (595)
T 1fwx_A          331 LGPLHTAFDGRG-NAYTS  347 (595)
T ss_dssp             SCEEEEEECTTS-EEEEE
T ss_pred             CCcceEEECCCC-eEEEE
Confidence            468899999999 65553

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.70  E-value=0.014  Score=57.73  Aligned_cols=187  Identities=10%  Similarity=0.149  Sum_probs=116.6

Q ss_pred             ccEEEEeecC-CEEEEecCCCcEEEEeCCCc-ceeeec---------CCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCC
Q 043707          124 GHIYSLAASG-DLLYTGSDSKNIRVWKNLKE-FSGFKS---------NSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSR  192 (347)
Q Consensus       124 ~~V~~l~~~~-~~l~tg~~dg~I~vwd~~~~-~~~~~~---------h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~  192 (347)
                      ..|.++..+. ..|..|+.++-|..|+.... +..+..         ....|.+++..++++.|..|..++-|.+||..+
T Consensus       357 ~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~  436 (795)
T 4a2l_A          357 NVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS  436 (795)
T ss_dssp             SSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT
T ss_pred             CeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC
Confidence            3588888753 35667887777999986532 322221         235799999998887577788777799999877


Q ss_pred             CCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEE
Q 043707          193 KNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES  272 (347)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~  272 (347)
                      ++.......  .+.                          .....|.++...+++.+.+. +. +.+.+||..+++....
T Consensus       437 ~~~~~~~~~--~~~--------------------------l~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~  486 (795)
T 4a2l_A          437 GQVENFNQR--NSQ--------------------------LVNENVYAILPDGEGNLWLG-TL-SALVRFNPEQRSFTTI  486 (795)
T ss_dssp             CCEEEECTT--TSC--------------------------CSCSCEEEEEECSSSCEEEE-ES-SCEEEEETTTTEEEEC
T ss_pred             CcEEEeecC--CCC--------------------------cCCCeeEEEEECCCCCEEEE-ec-CceeEEeCCCCeEEEc
Confidence            642211100  000                          13457889988887775554 44 4589999887754332


Q ss_pred             Eec------CCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeeh-hhhhccCCcEEEEEEccCCCEEEEec
Q 043707          273 INA------HDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLA-QVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       273 ~~~------h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~-~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                      ...      ....|.++...+++.|..|+. +-|..||......  ..... .........|.+|...++|.+.+++.
T Consensus       487 ~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~  561 (795)
T 4a2l_A          487 EKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR  561 (795)
T ss_dssp             CBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES
T ss_pred             cccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC
Confidence            211      235789999888886666666 5688888763321  00000 00112345799999999988666544

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.61  E-value=0.0024  Score=53.81  Aligned_cols=135  Identities=10%  Similarity=0.095  Sum_probs=84.2

Q ss_pred             EeecCCEEEEe-cCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccc
Q 043707          129 LAASGDLLYTG-SDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLP  205 (347)
Q Consensus       129 l~~~~~~l~tg-~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~  205 (347)
                      +.+.++.|+.. -.++.+.+||..  +.+..+..-.   ....+++++..|+.+..++.|.++|..+.+......+....
T Consensus        92 it~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g  168 (262)
T 3nol_A           92 ISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHG  168 (262)
T ss_dssp             EEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETT
T ss_pred             EEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCC
Confidence            45555544444 457899999954  4455554322   22334456777777776888999999887654443332100


Q ss_pred             cccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEe-CCCcEEEEeCCCCEEEEEEecC--------
Q 043707          206 TFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDCKCLESINAH--------  276 (347)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~vwdl~~~~~~~~~~~h--------  276 (347)
                                                 .--..++.+.|. +|. |+... .+..|.+.|.++++.+..+...        
T Consensus       169 ---------------------------~~~~~lNELe~~-~G~-lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~  219 (262)
T 3nol_A          169 ---------------------------EELPELNELEWV-DGE-IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGP  219 (262)
T ss_dssp             ---------------------------EECCCEEEEEEE-TTE-EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCS
T ss_pred             ---------------------------ccccccceeEEE-CCE-EEEEEccCCeEEEEECCCCcEEEEEECCcCcccccc
Confidence                                       011334556776 564 55555 5789999999999999888642        


Q ss_pred             ----CCcEEEEEeCCCC-EEEEEe
Q 043707          277 ----DDAINSVVAGFDS-LVFTGS  295 (347)
Q Consensus       277 ----~~~v~~i~~~~~~-~l~s~~  295 (347)
                          ....+.|+++|++ .|+..+
T Consensus       220 ~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          220 LPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             CCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             ccCcCCceEEEEEcCCCCEEEEEC
Confidence                1356899999976 444443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.61  E-value=0.025  Score=50.02  Aligned_cols=163  Identities=9%  Similarity=0.033  Sum_probs=95.7

Q ss_pred             CcEEEEeCCCc-ceeeecCCCCeeEEEEeCCCCEEE-EEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeE
Q 043707          143 KNIRVWKNLKE-FSGFKSNSGLVKAIIITGDSNKIF-TGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNY  220 (347)
Q Consensus       143 g~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~~~l~-s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (347)
                      ..|+..+.... ...+......+..++|.+....|+ +-...+.|+.+++..........                    
T Consensus        53 ~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~--------------------  112 (349)
T 3v64_C           53 IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS--------------------  112 (349)
T ss_dssp             SCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------------------
T ss_pred             cceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe--------------------
Confidence            45777775432 223323334588999998555555 44467888888887654211110                    


Q ss_pred             EEEeecceeeeeecCCCeeEEEEcCCCCEE-EEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCC-CEEE-EEeCC
Q 043707          221 VEVRRNRNVLKIRHYDAVSCLSLNAEQGLL-YSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVF-TGSAD  297 (347)
Q Consensus       221 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~-~~l~-s~~~d  297 (347)
                                  ........+++.+.+..| ++-...+.|.+.++........+...-.....|++.|. +.|+ +-...
T Consensus       113 ------------~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~  180 (349)
T 3v64_C          113 ------------TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN  180 (349)
T ss_dssp             ------------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSS
T ss_pred             ------------CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCC
Confidence                        012345678888755544 45555788999998654332223333456789999985 5444 44444


Q ss_pred             -CcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          298 -GTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       298 -g~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                       +.|..+++.....      .............|+++|++..|+.+.
T Consensus       181 ~~~I~r~~~dG~~~------~~~~~~~~~~PnGla~d~~~~~lY~aD  221 (349)
T 3v64_C          181 TPRIEASSMDGSGR------RIIADTHLFWPNGLTIDYAGRRMYWVD  221 (349)
T ss_dssp             SCEEEEEETTSCSC------EESCCSSCSCEEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEeCCCCCc------EEEEECCCCCcceEEEeCCCCEEEEEE
Confidence             7788887753211      111112234678999998777776654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.60  E-value=0.0026  Score=61.69  Aligned_cols=56  Identities=16%  Similarity=0.213  Sum_probs=40.3

Q ss_pred             CCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCc
Q 043707          255 WDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGK  310 (347)
Q Consensus       255 ~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~  310 (347)
                      .+|.|..||+.+++.+-+++.+...........+++++.++.|+.|++||.++++.
T Consensus       436 ~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~  491 (668)
T 1kv9_A          436 VSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA  491 (668)
T ss_dssp             CEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChh
Confidence            35889999999999987776443222111222456899999999999999986653

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.52  E-value=0.0032  Score=53.07  Aligned_cols=134  Identities=12%  Similarity=0.099  Sum_probs=86.9

Q ss_pred             EeecCC-EEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccc
Q 043707          129 LAASGD-LLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLP  205 (347)
Q Consensus       129 l~~~~~-~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~  205 (347)
                      +.+.++ +.+....++.+.+||..  +.+..+..- ..-+.++  ++++.|+.+..++.|.++|..+.+......+...+
T Consensus       101 it~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g  177 (268)
T 3nok_A          101 LASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRG  177 (268)
T ss_dssp             EEECSSCEEEEESSSCEEEEEETTTTEEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETT
T ss_pred             EEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCC
Confidence            555555 44445568899999954  444555432 2223444  46678887777899999999887654444332111


Q ss_pred             cccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEe-CCCcEEEEeCCCCEEEEEEecC--------
Q 043707          206 TFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDCKCLESINAH--------  276 (347)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~vwdl~~~~~~~~~~~h--------  276 (347)
                      .                           .-..++.+.|. +|. |+... .+..|.+.|.++++.+..+...        
T Consensus       178 ~---------------------------~v~~lNeLe~~-dG~-lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~  228 (268)
T 3nok_A          178 Q---------------------------PVELINELECA-NGV-IYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAG  228 (268)
T ss_dssp             E---------------------------ECCCEEEEEEE-TTE-EEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTT
T ss_pred             c---------------------------ccccccccEEe-CCE-EEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccc
Confidence            0                           12245667776 564 55555 4789999999999999888632        


Q ss_pred             -----CCcEEEEEeCCCC--EEEEE
Q 043707          277 -----DDAINSVVAGFDS--LVFTG  294 (347)
Q Consensus       277 -----~~~v~~i~~~~~~--~l~s~  294 (347)
                           .+-.+.|++.|++  +++||
T Consensus       229 ~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          229 QVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             TCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             cccCcCCceEEEEEcCCCCEEEEeC
Confidence                 1357899999975  55555

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.52  E-value=0.018  Score=51.85  Aligned_cols=105  Identities=16%  Similarity=0.128  Sum_probs=73.2

Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCE------------EEEEEec------CCCcEEEEEeCCCC----EEEEE
Q 043707          237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK------------CLESINA------HDDAINSVVAGFDS----LVFTG  294 (347)
Q Consensus       237 ~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~------------~~~~~~~------h~~~v~~i~~~~~~----~l~s~  294 (347)
                      .|..+..+|+|.+|+..+ +.+|.|-.+..+.            ..+.+.-      ...+|..+.|||-+    .|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            577899999999999987 5689999887321            1233432      24679999999964    89999


Q ss_pred             eCCCcEEEEEcccCCccceeeehhh-----hhccCCcEEEEEEccCCCEEEEec
Q 043707          295 SADGTVKVWRRELQGKGTKHFLAQV-----LLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       295 ~~dg~I~vwd~~~~~~~~~~~~~~~-----~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                      ..|+.|++||+........ .+-..     .......|.+++|..++-.|+..+
T Consensus       146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~  198 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLN  198 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEE
T ss_pred             ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEe
Confidence            9999999999985322111 11111     112236799999999887666643

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.50  E-value=0.00028  Score=63.15  Aligned_cols=130  Identities=8%  Similarity=-0.058  Sum_probs=82.3

Q ss_pred             cEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEe----------CCCcEEEEecCCCCCceeeeecccccccceE
Q 043707          144 NIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGH----------QDGKIRIWKVSRKNPSVHKRVGSLPTFKDYV  211 (347)
Q Consensus       144 ~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~----------~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~  211 (347)
                      +|.++|..  +.+..+..-..+  .++++|++++++.+.          .++.|.+||..+.+......++.-+.+    
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~----  120 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRF----  120 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSC----
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccc----
Confidence            78888854  345555544445  799999999998886          378999999999876544433200000    


Q ss_pred             EeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC--CCcEEE--EeCCCCEEEEEEecCCCcEEEEEeCC
Q 043707          212 KSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW--DKTLKV--WRISDCKCLESINAHDDAINSVVAGF  287 (347)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--dg~i~v--wdl~~~~~~~~~~~h~~~v~~i~~~~  287 (347)
                                           ........++++||+++|+++..  +..+.+  +|+.+   +..+.....    +...|
T Consensus       121 ---------------------~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p  172 (368)
T 1mda_H          121 ---------------------SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FHIHP  172 (368)
T ss_dssp             ---------------------CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CCCEE
T ss_pred             ---------------------ccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eEEcc
Confidence                                 00123456899999999999875  456888  99877   455542111    11223


Q ss_pred             CC--EEEEEeCCCcEEEEEccc
Q 043707          288 DS--LVFTGSADGTVKVWRREL  307 (347)
Q Consensus       288 ~~--~l~s~~~dg~I~vwd~~~  307 (347)
                      ++  .+++.+.||.+.+.|+..
T Consensus       173 ~g~~~~~~~~~dg~~~~vd~~~  194 (368)
T 1mda_H          173 GAAATHYLGSCPASLAASDLAA  194 (368)
T ss_dssp             EETTEEECCCCTTSCEEEECCS
T ss_pred             CCCeEEEEEcCCCCEEEEECcc
Confidence            32  445556677776666654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.47  E-value=0.0099  Score=54.32  Aligned_cols=143  Identities=8%  Similarity=-0.010  Sum_probs=85.8

Q ss_pred             CCEEEEecCCCcEEEEeCCC-cceeeecCCCCeeEEEEeCCCCEEEEEeCC-C---cEEEEecCCCCCceeeeecccccc
Q 043707          133 GDLLYTGSDSKNIRVWKNLK-EFSGFKSNSGLVKAIIITGDSNKIFTGHQD-G---KIRIWKVSRKNPSVHKRVGSLPTF  207 (347)
Q Consensus       133 ~~~l~tg~~dg~I~vwd~~~-~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D-g---~I~vwd~~~~~~~~~~~~~~~~~~  207 (347)
                      +..|+.+...+.|+.+|... .+..+.........|+|++++++|+.+... +   ...+|-...+.......+      
T Consensus       149 ~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l------  222 (430)
T 3tc9_A          149 HNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITEL------  222 (430)
T ss_dssp             EEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEE------
T ss_pred             CCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeee------
Confidence            34555555447888888654 344444445568899999999866666542 2   122222222221100000      


Q ss_pred             cceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCEEEEEEec-CCCcEEEEEe
Q 043707          208 KDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESINA-HDDAINSVVA  285 (347)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~-h~~~v~~i~~  285 (347)
                                               ........++++| ++.++++-..++.|..++...+.....+.. .......|++
T Consensus       223 -------------------------~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~  277 (430)
T 3tc9_A          223 -------------------------TKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQF  277 (430)
T ss_dssp             -------------------------EECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEE
T ss_pred             -------------------------ccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEE
Confidence                                     0123356788999 666666666678999999987764332322 2234678999


Q ss_pred             CCCC-EEE-EEeCCCcEEEEEcc
Q 043707          286 GFDS-LVF-TGSADGTVKVWRRE  306 (347)
Q Consensus       286 ~~~~-~l~-s~~~dg~I~vwd~~  306 (347)
                      +|++ +|+ +-...+.|..++..
T Consensus       278 ~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          278 HPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cCCCCEEEEEECCCCEEEEEeCC
Confidence            9998 344 45567899998865

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.45  E-value=0.023  Score=51.08  Aligned_cols=170  Identities=9%  Similarity=0.048  Sum_probs=97.3

Q ss_pred             EEEEecCCCcEEEEeCCC-cceeeecCCCCeeEEEEeCCCCEEE-EEeCCCcEEEEecCCCCCceeeeecccccccceEE
Q 043707          135 LLYTGSDSKNIRVWKNLK-EFSGFKSNSGLVKAIIITGDSNKIF-TGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVK  212 (347)
Q Consensus       135 ~l~tg~~dg~I~vwd~~~-~~~~~~~h~~~V~~l~~sp~~~~l~-s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~  212 (347)
                      +|+.+. ...|+..+... ....+......+..++|.+.+..|+ +-...+.|+.+++..........            
T Consensus        89 ~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~------------  155 (386)
T 3v65_B           89 VLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS------------  155 (386)
T ss_dssp             EEEEEC-BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC------------
T ss_pred             eeEeec-CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe------------
Confidence            343333 35688887543 2333333345688999998555554 44567788888887653211100            


Q ss_pred             eccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEE-EEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCC-CE
Q 043707          213 SSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLL-YSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SL  290 (347)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~-~~  290 (347)
                                          ........+++.+.+..| ++-...+.|.+.++........+...-.....|++.|. +.
T Consensus       156 --------------------~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~  215 (386)
T 3v65_B          156 --------------------TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGT  215 (386)
T ss_dssp             --------------------SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTE
T ss_pred             --------------------CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCe
Confidence                                012234568888755544 44455678888888644333333333356788999875 44


Q ss_pred             EEEEe-CC-CcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          291 VFTGS-AD-GTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       291 l~s~~-~d-g~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                      |+... .. +.|..+++.....  .    ............|+|+|++..|+.+.
T Consensus       216 ly~td~~~~~~I~r~~~dG~~~--~----~~~~~~~~~PnGlavd~~~~~lY~aD  264 (386)
T 3v65_B          216 IYWTDWGNTPRIEASSMDGSGR--R----IIADTHLFWPNGLTIDYAGRRMYWVD  264 (386)
T ss_dssp             EEEEECSSSCEEEEEETTSCSC--E----EEECSSCSCEEEEEEEGGGTEEEEEE
T ss_pred             EEEeccCCCCEEEEEeCCCCCc--E----EEEECCCCCeeeEEEeCCCCEEEEEE
Confidence            44443 44 6788777753211  1    11112234578999998777766653

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.41  E-value=0.04  Score=48.18  Aligned_cols=184  Identities=7%  Similarity=0.056  Sum_probs=97.4

Q ss_pred             ccEEEEee--cCCEEEEecCCCcEEE-EeCCCcceee-ecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceee
Q 043707          124 GHIYSLAA--SGDLLYTGSDSKNIRV-WKNLKEFSGF-KSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHK  199 (347)
Q Consensus       124 ~~V~~l~~--~~~~l~tg~~dg~I~v-wd~~~~~~~~-~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~  199 (347)
                      +.++.+.+  ++.+++.+ .+|.|+. .|-.+..... ......+..+++.+++.+++.+...+..+-+|-. +..-...
T Consensus       122 ~~~~~i~~~~~~~~~~~~-~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G~tW~~~  199 (327)
T 2xbg_A          122 GSPRLIKALGNGSAEMIT-NVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-QTAWEPH  199 (327)
T ss_dssp             SCEEEEEEEETTEEEEEE-TTCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT-CSSCEEE
T ss_pred             CCeEEEEEECCCCEEEEe-CCccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC-CCceeEC
Confidence            34556654  34445444 4565533 3434333322 2345678899999988777666443333333321 1110000


Q ss_pred             eecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEec----
Q 043707          200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA----  275 (347)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~----  275 (347)
                      .                               ......+..+.+.+++.+++ .+.+|.+++.+...++....+..    
T Consensus       200 ~-------------------------------~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~  247 (327)
T 2xbg_A          200 N-------------------------------RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRR  247 (327)
T ss_dssp             E-------------------------------CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSS
T ss_pred             C-------------------------------CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCccc
Confidence            0                               01345677888888877654 45578887775333444433321    


Q ss_pred             CCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          276 HDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       276 h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      +...+..+.+.+++.+++++.++.|. +..+ .++  ..............+.+|.|.+++. +++++.+|
T Consensus       248 ~~~~~~~v~~~~~~~~~~~g~~g~i~-~S~D-gG~--tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G  313 (327)
T 2xbg_A          248 NSVGFLDLAYRTPNEVWLAGGAGALL-CSQD-GGQ--TWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKG  313 (327)
T ss_dssp             CCSCEEEEEESSSSCEEEEESTTCEE-EESS-TTS--SCEECGGGTTSSSCCCEEEEEETTE-EEEECSTT
T ss_pred             CCcceEEEEecCCCEEEEEeCCCeEE-EeCC-CCc--ccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCc
Confidence            22358889998877555566677763 3332 232  2222222222335678888875554 55556666

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.39  E-value=0.011  Score=49.20  Aligned_cols=134  Identities=16%  Similarity=0.143  Sum_probs=84.0

Q ss_pred             EeecCC-EEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccc
Q 043707          129 LAASGD-LLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLP  205 (347)
Q Consensus       129 l~~~~~-~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~  205 (347)
                      +...++ +......++.+.+||..  +.+..+..- ..=+.++  +++..|+.+..+++|.++|..+.+......+...+
T Consensus        70 i~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~-~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g  146 (243)
T 3mbr_X           70 IVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYP-GEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGG  146 (243)
T ss_dssp             EEEETTEEEEEESSSSEEEEEETTTTEEEEEEECS-SCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETT
T ss_pred             EEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCC-CCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCC
Confidence            444444 44445668899999954  444555432 2223444  56667777777899999999887654444332110


Q ss_pred             cccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEe-CCCcEEEEeCCCCEEEEEEecC--------
Q 043707          206 TFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDCKCLESINAH--------  276 (347)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~vwdl~~~~~~~~~~~h--------  276 (347)
                      .                           --..++.+.|. ++. |+... .+..|.+.|.++++.+..+...        
T Consensus       147 ~---------------------------~~~~lNeLe~~-~G~-lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~  197 (243)
T 3mbr_X          147 R---------------------------PLDNLNELEWV-NGE-LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADA  197 (243)
T ss_dssp             E---------------------------ECCCEEEEEEE-TTE-EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTS
T ss_pred             c---------------------------ccccceeeEEe-CCE-EEEEECCCCeEEEEECCCCCEEEEEECCcCcccccc
Confidence            0                           11234556665 454 44554 4789999999999999888622        


Q ss_pred             -----CCcEEEEEeCCCC--EEEEE
Q 043707          277 -----DDAINSVVAGFDS--LVFTG  294 (347)
Q Consensus       277 -----~~~v~~i~~~~~~--~l~s~  294 (347)
                           .+-.+.|++.|++  +++||
T Consensus       198 ~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          198 LTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             CCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             ccCCcCCceEEEEEcCCCCEEEEEC
Confidence                 1356899999975  55555

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.39  E-value=0.019  Score=56.64  Aligned_cols=184  Identities=16%  Similarity=0.205  Sum_probs=111.6

Q ss_pred             ccEEEEeecC-CEEEEecCCCcEEEEeCCCc-ceee----ecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCce
Q 043707          124 GHIYSLAASG-DLLYTGSDSKNIRVWKNLKE-FSGF----KSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSV  197 (347)
Q Consensus       124 ~~V~~l~~~~-~~l~tg~~dg~I~vwd~~~~-~~~~----~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~  197 (347)
                      ..|.++..+. ..|..|+.++-|..|+.... ...+    ......|.++...+++. |..|..++-|..+|..+++...
T Consensus       363 ~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~  441 (781)
T 3v9f_A          363 KVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQI  441 (781)
T ss_dssp             SCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEE
T ss_pred             cceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEE
Confidence            4588888764 35666776666888886532 2111    12235789998887775 4557766678888876653211


Q ss_pred             eeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecC-
Q 043707          198 HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH-  276 (347)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h-  276 (347)
                      .... .                             .....|.++...+++. |..|+. +.|.+||..+++........ 
T Consensus       442 ~~~~-~-----------------------------~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~  489 (781)
T 3v9f_A          442 IELE-K-----------------------------NELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSN  489 (781)
T ss_dssp             CCST-T-----------------------------TCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTT
T ss_pred             eccC-C-----------------------------CCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcc
Confidence            1000 0                             1345688888887765 455555 56899998776543322222 


Q ss_pred             ----CCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          277 ----DDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       277 ----~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                          ...|.++...+++.|..|+.++-|..||......  .... ..-.-....|.++...++|.+.+++.
T Consensus       490 ~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~--~~~~-~~~~l~~~~i~~i~~d~~g~lWi~T~  557 (781)
T 3v9f_A          490 SQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLV--RKFN-QYEGFCSNTINQIYRSSKGQMWLATG  557 (781)
T ss_dssp             SSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEE--EEEC-TTTTCSCSCEEEEEECTTSCEEEEET
T ss_pred             cccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeE--EEcc-CCCCCCCCeeEEEEECCCCCEEEEEC
Confidence                3578999988888777777755577788753211  1111 00011245789999998888766543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.38  E-value=0.012  Score=55.98  Aligned_cols=54  Identities=11%  Similarity=0.030  Sum_probs=38.7

Q ss_pred             CCcEEEEeCCCCEEEEEEecCCCcEEEE-EeCCCCEEEEEeCCCcEEEEEcccCCc
Q 043707          256 DKTLKVWRISDCKCLESINAHDDAINSV-VAGFDSLVFTGSADGTVKVWRRELQGK  310 (347)
Q Consensus       256 dg~i~vwdl~~~~~~~~~~~h~~~v~~i-~~~~~~~l~s~~~dg~I~vwd~~~~~~  310 (347)
                      +|.|..||+.+++.+-+++.... +... ....+++++.++.|+.|+.||.++++.
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~~~-~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~  497 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEKFA-AWGGTLYTKGGLVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSC-CCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCeEEEEECCCCCEEEEecCCCC-ccceeEEECCCEEEEEcCCCeEEEEECCCCCE
Confidence            57899999999998877763322 2211 122356888899999999999987653

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.38  E-value=0.0012  Score=65.10  Aligned_cols=111  Identities=8%  Similarity=0.030  Sum_probs=69.9

Q ss_pred             CeeEEEEe-CCCCEEEEEeC-CC----cEEEEecCCC-CCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecC
Q 043707          163 LVKAIIIT-GDSNKIFTGHQ-DG----KIRIWKVSRK-NPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHY  235 (347)
Q Consensus       163 ~V~~l~~s-p~~~~l~s~~~-Dg----~I~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  235 (347)
                      .+...+|+ |||++|+-+.. +|    +|+++|+.++ +.... .+                                 .
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~---------------------------------~  220 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KV---------------------------------S  220 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CE---------------------------------E
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cc---------------------------------c
Confidence            67889999 99998775442 33    4999999887 52110 00                                 0


Q ss_pred             CCeeEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCEE--EEEEe-cCCCcEEEEEeCCCC-EEE-EEe--CCCcEEEE
Q 043707          236 DAVSCLSLNAEQGLLYSGSWD-----KTLKVWRISDCKC--LESIN-AHDDAINSVVAGFDS-LVF-TGS--ADGTVKVW  303 (347)
Q Consensus       236 ~~V~~l~~~~~~~~l~s~s~d-----g~i~vwdl~~~~~--~~~~~-~h~~~v~~i~~~~~~-~l~-s~~--~dg~I~vw  303 (347)
                      .....++|+||++.|+....|     ..|+++++.+++.  ...+. ........+.|+||+ +|+ +..  ....|.++
T Consensus       221 ~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~  300 (751)
T 2xe4_A          221 GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLL  300 (751)
T ss_dssp             EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEE
T ss_pred             CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEE
Confidence            012457899999877766654     2588888877531  22232 223456678999998 444 332  24567777


Q ss_pred             Eccc
Q 043707          304 RREL  307 (347)
Q Consensus       304 d~~~  307 (347)
                      |+..
T Consensus       301 d~~~  304 (751)
T 2xe4_A          301 DLRK  304 (751)
T ss_dssp             ESSS
T ss_pred             ECCC
Confidence            8764

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.37  E-value=0.028  Score=55.44  Aligned_cols=189  Identities=14%  Similarity=0.172  Sum_probs=113.7

Q ss_pred             ccEEEEeecC-CEEEEecCCCcEEEEeCCCc-ceeee----------cCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecC
Q 043707          124 GHIYSLAASG-DLLYTGSDSKNIRVWKNLKE-FSGFK----------SNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVS  191 (347)
Q Consensus       124 ~~V~~l~~~~-~~l~tg~~dg~I~vwd~~~~-~~~~~----------~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~  191 (347)
                      ..|.++..+. ..|-.|+.++-|..++.... +..+.          .....|.++...+++. |..|..++-|.+||..
T Consensus       313 ~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~  391 (781)
T 3v9f_A          313 ASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENG  391 (781)
T ss_dssp             SCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETT
T ss_pred             CeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECC
Confidence            3578877653 35666776677888875432 22221          1235689999888774 5566666668888876


Q ss_pred             CCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEE
Q 043707          192 RKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE  271 (347)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~  271 (347)
                      ++.......    +.                         ......|.++...+++.+ ..|+.++.|..+|.++++.. 
T Consensus       392 ~~~~~~~~~----~~-------------------------~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~-  440 (781)
T 3v9f_A          392 KRVAIYNKE----NR-------------------------ELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQ-  440 (781)
T ss_dssp             EEEEECC----------------------------------CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEEE-
T ss_pred             CCeEEEccC----CC-------------------------CCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcEE-
Confidence            432110000    00                         013466888888877764 45777777999998776543 


Q ss_pred             EEe---cCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          272 SIN---AHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       272 ~~~---~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      .+.   .....|.++...+++.|..|+. +-|..||....... ..............|.++...++|.+.+.+..+|
T Consensus       441 ~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G  516 (781)
T 3v9f_A          441 IIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVI-HHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG  516 (781)
T ss_dssp             ECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCC-EEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC
T ss_pred             EeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEE-ecccCcccccccceeEEEEEcCCCCEEEEEcCCC
Confidence            332   1346789998888887777777 56888887643210 0000000011145799999999888766554344

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.33  E-value=0.051  Score=47.49  Aligned_cols=182  Identities=10%  Similarity=0.071  Sum_probs=98.3

Q ss_pred             ccEEEEeecCCEEEEecCCCcEEEEeC-CCcceeee---cCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceee
Q 043707          124 GHIYSLAASGDLLYTGSDSKNIRVWKN-LKEFSGFK---SNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHK  199 (347)
Q Consensus       124 ~~V~~l~~~~~~l~tg~~dg~I~vwd~-~~~~~~~~---~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~  199 (347)
                      ..+.++.++++.++.++..+.|+.-+. .+......   .+.+.+..|.+.+++..++.+ .+|.|  |....+-..-..
T Consensus        80 ~~~~~i~~~~~~~~~~g~~g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v--~~S~DgG~tW~~  156 (327)
T 2xbg_A           80 YRFNSVSFQGNEGWIVGEPPIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAI--YRTKDSGKNWQA  156 (327)
T ss_dssp             CEEEEEEEETTEEEEEEETTEEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCE--EEESSTTSSEEE
T ss_pred             ccEEEEEecCCeEEEEECCCeEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccE--EEEcCCCCCCEE
Confidence            356777766555555566676655432 22222221   233457788877666555544 45543  222221111111


Q ss_pred             eecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC--CCCEEEEEEecCC
Q 043707          200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI--SDCKCLESINAHD  277 (347)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl--~~~~~~~~~~~h~  277 (347)
                      ..                              ......+..+.+.+++.+++.+...+..+-+|-  .+.+.+.  ....
T Consensus       157 ~~------------------------------~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~  204 (327)
T 2xbg_A          157 LV------------------------------QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTS  204 (327)
T ss_dssp             EE------------------------------CSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSS
T ss_pred             ee------------------------------cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCC
Confidence            00                              013446788899998888777654433334442  3444442  2345


Q ss_pred             CcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhh-hccCCcEEEEEEccCCCEEEEec
Q 043707          278 DAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVL-LKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       278 ~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~-~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                      ..+..+.+.+++.++.++.+|.+++++.. .++  .......- ..+...+.++++.+++..++++.
T Consensus       205 ~~~~~~~~~~~g~~~~~~~~G~~~~s~~D-~G~--tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~  268 (327)
T 2xbg_A          205 RRLHNMGFTPDGRLWMIVNGGKIAFSDPD-NSE--NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG  268 (327)
T ss_dssp             SCEEEEEECTTSCEEEEETTTEEEEEETT-EEE--EECCCBCTTSSCCSCEEEEEESSSSCEEEEES
T ss_pred             CccceeEECCCCCEEEEeCCceEEEecCC-CCC--eeEeccCCcccCCcceEEEEecCCCEEEEEeC
Confidence            67888999888866677788888776422 111  11111111 11234688999998888777665

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.31  E-value=0.0096  Score=56.68  Aligned_cols=55  Identities=24%  Similarity=0.245  Sum_probs=39.2

Q ss_pred             CCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCc
Q 043707          256 DKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGK  310 (347)
Q Consensus       256 dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~  310 (347)
                      +|.|..||+.+++.+-+.+.............+++++.++.|+.|+.||.++++.
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~  519 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE  519 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCE
Confidence            6889999999999887765432211111112367888899999999999987654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.28  E-value=0.077  Score=46.61  Aligned_cols=182  Identities=12%  Similarity=0.192  Sum_probs=103.8

Q ss_pred             cCCEEEEecCCCcEEEEeCCCc-ceeeecCCCCeeEEEEeCC----CC---E-EEEEeC--CCcEEEEecCCCCCceeee
Q 043707          132 SGDLLYTGSDSKNIRVWKNLKE-FSGFKSNSGLVKAIIITGD----SN---K-IFTGHQ--DGKIRIWKVSRKNPSVHKR  200 (347)
Q Consensus       132 ~~~~l~tg~~dg~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~----~~---~-l~s~~~--Dg~I~vwd~~~~~~~~~~~  200 (347)
                      ...+++.....+-+.+||+... ++.+..  +.++.+..-|+    ++   + +++.-.  +++|++|++...... ...
T Consensus        39 ~~s~ii~t~k~~gL~Vydl~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~  115 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSLDGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS  115 (355)
T ss_dssp             GGCEEEEEETTTEEEEEETTSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred             CccEEEEEcCCCCEEEEcCCCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence            3446666667788999997533 333332  66777777663    22   2 333334  578999988532211 111


Q ss_pred             eccc--ccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEE--cCC-CC-EEEEEeCCCcEEEEeCC-------CC
Q 043707          201 VGSL--PTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSL--NAE-QG-LLYSGSWDKTLKVWRIS-------DC  267 (347)
Q Consensus       201 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~--~~~-~~-~l~s~s~dg~i~vwdl~-------~~  267 (347)
                      +...  |.                         ..-...+..+++  ++. +. ++++...+|.+..|++.       +.
T Consensus       116 i~~~~~pv-------------------------~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~  170 (355)
T 3amr_A          116 MTDPDHPI-------------------------ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISG  170 (355)
T ss_dssp             CSCTTSCE-------------------------ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEE
T ss_pred             ccccccCc-------------------------CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccc
Confidence            1110  10                         001144566776  664 43 68888889999999983       34


Q ss_pred             EEEEEEecCCCcEEEEEeCCC-CEEEEEeCCCcEEEEEcccCCccceeeehhhh-hcc-CCcEEEEEEc--cCCC-EEEE
Q 043707          268 KCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVWRRELQGKGTKHFLAQVL-LKQ-ENAITALAVN--QESA-VVYC  341 (347)
Q Consensus       268 ~~~~~~~~h~~~v~~i~~~~~-~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~-~~h-~~~V~~l~~~--p~~~-~l~s  341 (347)
                      +.+++|.... .+-.|...+. +.|+.+-++.-|..++.+.... ....++... .++ ...+..|++-  ++++ +|++
T Consensus       171 ~lVR~f~lgs-q~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~-~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLiv  248 (355)
T 3amr_A          171 KKVRAFKMNS-QTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGG-SNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMA  248 (355)
T ss_dssp             EEEEEEECSS-CEEEEEEETTTTEEEEEETTTEEEEEECSTTSC-SCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEE
T ss_pred             eEEEEecCCC-CcceEEEcCCCCeEEEecccceEEEEeCCcCCC-CCceEEEEecCCccccCcceEEEEecCCCCEEEEE
Confidence            6778887554 4666666654 5999999986665555442221 111122222 223 3478888884  5555 5665


Q ss_pred             ec
Q 043707          342 GS  343 (347)
Q Consensus       342 gs  343 (347)
                      ++
T Consensus       249 Ss  250 (355)
T 3amr_A          249 SS  250 (355)
T ss_dssp             EE
T ss_pred             Ec
Confidence            55

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.27  E-value=0.014  Score=56.47  Aligned_cols=212  Identities=10%  Similarity=0.018  Sum_probs=104.0

Q ss_pred             EeecCCEEEEecC-CCcEEEEeCCCcc-eeee-cCCCC-eeEEEEeCCCCEEEEEe-CC-----CcEEEEecCCCCCcee
Q 043707          129 LAASGDLLYTGSD-SKNIRVWKNLKEF-SGFK-SNSGL-VKAIIITGDSNKIFTGH-QD-----GKIRIWKVSRKNPSVH  198 (347)
Q Consensus       129 l~~~~~~l~tg~~-dg~I~vwd~~~~~-~~~~-~h~~~-V~~l~~sp~~~~l~s~~-~D-----g~I~vwd~~~~~~~~~  198 (347)
                      +..++++++.|+. +..+++||..... .... -+... -.+++..++++.++.|+ .+     ..+.+||..+.+-...
T Consensus       250 ~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~  329 (656)
T 1k3i_A          250 MDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL  329 (656)
T ss_dssp             ECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE
T ss_pred             CCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeC
Confidence            3457888888884 4589999854331 1111 11111 23455667888999888 44     5689999876542111


Q ss_pred             eee--ccccc----------ccceEEeccCCCe-------EEEEeec---ceeeeee-c---------CCCeeEEEEcC-
Q 043707          199 KRV--GSLPT----------FKDYVKSSVNPKN-------YVEVRRN---RNVLKIR-H---------YDAVSCLSLNA-  245 (347)
Q Consensus       199 ~~~--~~~~~----------~~~~~~~~~~~~~-------~~~~~~~---~~~~~~~-h---------~~~V~~l~~~~-  245 (347)
                      ...  ..++.          ..-++....++..       .+.....   .-....+ +         ...-.++.|.. 
T Consensus       330 ~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~  409 (656)
T 1k3i_A          330 PNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAV  409 (656)
T ss_dssp             TTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETT
T ss_pred             CCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCC
Confidence            000  00110          0111222111110       1111110   0000000 0         11123444433 


Q ss_pred             CCCEEEEEeCCC-----------cEEEEeCCCCEEEEEE--ecCCCcE-EEEEeCCCC-EEEEEeCC-----------Cc
Q 043707          246 EQGLLYSGSWDK-----------TLKVWRISDCKCLESI--NAHDDAI-NSVVAGFDS-LVFTGSAD-----------GT  299 (347)
Q Consensus       246 ~~~~l~s~s~dg-----------~i~vwdl~~~~~~~~~--~~h~~~v-~~i~~~~~~-~l~s~~~d-----------g~  299 (347)
                      ++++++.|+.++           .|.+||..+.+-....  ..+.... .+++..+++ +++.|+.+           ..
T Consensus       410 ~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~  489 (656)
T 1k3i_A          410 KGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFT  489 (656)
T ss_dssp             TTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCC
T ss_pred             CCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccc
Confidence            677777777532           6788888776543332  1122222 233455666 67777654           56


Q ss_pred             EEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707          300 VKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       300 I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      +.+||....    .......+...........+.|++++++.||.
T Consensus       490 v~~ydp~t~----~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          490 PEIYVPEQD----TFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CEEEEGGGT----EEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             eEEEcCCCC----ceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            899998743    22222222222222334556789999999985

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.27  E-value=0.014  Score=50.75  Aligned_cols=131  Identities=13%  Similarity=0.070  Sum_probs=79.3

Q ss_pred             CcEEEEeCC-CcceeeecCCCCeeEEEEeCCCCEEEEE-eCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeE
Q 043707          143 KNIRVWKNL-KEFSGFKSNSGLVKAIIITGDSNKIFTG-HQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNY  220 (347)
Q Consensus       143 g~I~vwd~~-~~~~~~~~h~~~V~~l~~sp~~~~l~s~-~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (347)
                      +.|..||.. .....+...-.....|+|+|+++.|+.+ ...+.|.++++............                  
T Consensus       165 g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~------------------  226 (322)
T 2fp8_A          165 GRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV------------------  226 (322)
T ss_dssp             EEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE------------------
T ss_pred             ceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE------------------
Confidence            567777753 2222222222345679999999866655 55688999998753211000000                  


Q ss_pred             EEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCEEEEEEecCC----CcEEEEEeC
Q 043707          221 VEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW----------DKTLKVWRISDCKCLESINAHD----DAINSVVAG  286 (347)
Q Consensus       221 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~----------dg~i~vwdl~~~~~~~~~~~h~----~~v~~i~~~  286 (347)
                                  .... ...+++.++|++.++...          .+.|..+|. +++.+..+....    ..+..+++.
T Consensus       227 ------------~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~  292 (322)
T 2fp8_A          227 ------------KIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEH  292 (322)
T ss_dssp             ------------ECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEE
T ss_pred             ------------eCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEEe
Confidence                        0112 567889999886666544          366888886 577777776442    346666663


Q ss_pred             CCC-EEEEEeCCCcEEEEEcc
Q 043707          287 FDS-LVFTGSADGTVKVWRRE  306 (347)
Q Consensus       287 ~~~-~l~s~~~dg~I~vwd~~  306 (347)
                       ++ ++++...++.|.++++.
T Consensus       293 -~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          293 -DGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             -TTEEEEECSSCSEEEEEEC-
T ss_pred             -CCEEEEeecCCCceEEEecc
Confidence             55 44455568899999886

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.22  E-value=0.005  Score=56.32  Aligned_cols=141  Identities=7%  Similarity=0.010  Sum_probs=82.3

Q ss_pred             CeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEE
Q 043707          163 LVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCL  241 (347)
Q Consensus       163 ~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  241 (347)
                      ....|+++| ++..|+.+...+.|+.+|+..+......                                 ........|
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~---------------------------------~~~~~P~~i  184 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY---------------------------------SGLSKVRTI  184 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE---------------------------------CCCSCEEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe---------------------------------cCCCCcceE
Confidence            457889998 4556776666578888888765321110                                 133457789


Q ss_pred             EEcCCCCEEEEEeCC-C----cEEEEeCCCCEEE--EEEecCCCcEEEEEeCC-CCEEE-EEeCCCcEEEEEcccCCccc
Q 043707          242 SLNAEQGLLYSGSWD-K----TLKVWRISDCKCL--ESINAHDDAINSVVAGF-DSLVF-TGSADGTVKVWRRELQGKGT  312 (347)
Q Consensus       242 ~~~~~~~~l~s~s~d-g----~i~vwdl~~~~~~--~~~~~h~~~v~~i~~~~-~~~l~-s~~~dg~I~vwd~~~~~~~~  312 (347)
                      +|+++++.|+.+... +    .+.+.+. .+...  ..+.. ......++++| ++.|+ +-..++.|..++......  
T Consensus       185 a~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~--  260 (430)
T 3tc9_A          185 CWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET--  260 (430)
T ss_dssp             EECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE--
T ss_pred             EEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE--
Confidence            999999966666642 2    2333432 22111  22221 23356778898 66544 445678899998863221  


Q ss_pred             eeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          313 KHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       313 ~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                        ..+... ........|+|+|++++|+.+.
T Consensus       261 --~~~~~~-~~~~~P~gia~~pdG~~lyv~d  288 (430)
T 3tc9_A          261 --TPLFTI-QDSGWEFHIQFHPSGNYAYIVV  288 (430)
T ss_dssp             --EEEEEC-SSSSCCEEEEECTTSSEEEEEE
T ss_pred             --EEEEEc-CCCCcceeEEEcCCCCEEEEEE
Confidence              011111 1123568999999999666554

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.22  E-value=0.092  Score=47.33  Aligned_cols=165  Identities=13%  Similarity=0.073  Sum_probs=97.1

Q ss_pred             CcEEEEeCCCc-ceeeecCCCCeeEEEEeCCCCEEEEE-eCCCcEEEEecCCCCC--ceeeeecccccccceEEeccCCC
Q 043707          143 KNIRVWKNLKE-FSGFKSNSGLVKAIIITGDSNKIFTG-HQDGKIRIWKVSRKNP--SVHKRVGSLPTFKDYVKSSVNPK  218 (347)
Q Consensus       143 g~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s~-~~Dg~I~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  218 (347)
                      ..|+..++... ...+......+.+|+|.+.+..|+.. ...+.|+.+++.....  .....+                 
T Consensus        92 ~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~-----------------  154 (400)
T 3p5b_L           92 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-----------------  154 (400)
T ss_dssp             TEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE-----------------
T ss_pred             ceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE-----------------
Confidence            56777775533 33333445678899999865555544 4567888888865321  000000                 


Q ss_pred             eEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCC-CEEEEEe-
Q 043707          219 NYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGS-  295 (347)
Q Consensus       219 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~-~~l~s~~-  295 (347)
                                   .........|++.+. ++++++-...+.|.+.++........+...-.....|++.|. +.|+... 
T Consensus       155 -------------~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~  221 (400)
T 3p5b_L          155 -------------SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW  221 (400)
T ss_dssp             -------------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEEC
T ss_pred             -------------eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeC
Confidence                         012345678899885 444455555788999998765444444434455789999885 5555443 


Q ss_pred             -CCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          296 -ADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       296 -~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                       ..+.|...++.....  . .+   ....-.....|+++++++.|+.+.
T Consensus       222 ~~~~~I~~~~~dG~~~--~-~~---~~~~l~~P~glavd~~~~~lY~aD  264 (400)
T 3p5b_L          222 GTPAKIKKGGLNGVDI--Y-SL---VTENIQWPNGITLDLLSGRLYWVD  264 (400)
T ss_dssp             SSSCCEEEEETTSCSC--E-EE---ECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEEeCCCCcc--E-EE---EECCCCceEEEEEEeCCCEEEEEE
Confidence             247788888763221  1 11   112234678999998887777653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.19  E-value=0.015  Score=50.72  Aligned_cols=161  Identities=11%  Similarity=0.056  Sum_probs=94.9

Q ss_pred             ecCCCCeeEEEEeCCCCEEEEEe-CCCcEEEEecCCCCCceeeeecccc-cccceEEeccCCCeEEEEeecceeeeeecC
Q 043707          158 KSNSGLVKAIIITGDSNKIFTGH-QDGKIRIWKVSRKNPSVHKRVGSLP-TFKDYVKSSVNPKNYVEVRRNRNVLKIRHY  235 (347)
Q Consensus       158 ~~h~~~V~~l~~sp~~~~l~s~~-~Dg~I~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  235 (347)
                      .....--.+++|.+....|+.++ ..++|..||...+..... .+.... ..                         ...
T Consensus         9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g-------------------------~~~   62 (334)
T 2p9w_A            9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNG-------------------------DGE   62 (334)
T ss_dssp             CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSS-------------------------CCS
T ss_pred             cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccC-------------------------CCc
Confidence            33445567899998555666666 789999999875532211 111000 00                         011


Q ss_pred             CCeeEEEE---cCCCCEEEEEe-------------CCCcEEEEeCC---CCEEEEEEe--cC-----------CCcEEEE
Q 043707          236 DAVSCLSL---NAEQGLLYSGS-------------WDKTLKVWRIS---DCKCLESIN--AH-----------DDAINSV  283 (347)
Q Consensus       236 ~~V~~l~~---~~~~~~l~s~s-------------~dg~i~vwdl~---~~~~~~~~~--~h-----------~~~v~~i  283 (347)
                      ..+..|.|   .+++.++++..             .+..+..||+.   +++.+....  ..           ....+.+
T Consensus        63 ~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDv  142 (334)
T 2p9w_A           63 QQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQS  142 (334)
T ss_dssp             EEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEE
T ss_pred             ceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCcee
Confidence            13578999   68877776543             26779999999   787765554  11           1247899


Q ss_pred             EeCCCC-EEEEEeCC-CcEEEEEcccCCccce-eeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          284 VAGFDS-LVFTGSAD-GTVKVWRRELQGKGTK-HFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       284 ~~~~~~-~l~s~~~d-g~I~vwd~~~~~~~~~-~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      +..++| ..++++.. +.|...+..  ++... ..............+.|+++|++..|++...+|
T Consensus       143 avD~~GnaYVt~s~~~~~I~rV~pd--G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g  206 (334)
T 2p9w_A          143 AQDRDGNSYVAFALGMPAIARVSAD--GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPR  206 (334)
T ss_dssp             EECTTSCEEEEEEESSCEEEEECTT--SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSS
T ss_pred             EECCCCCEEEeCCCCCCeEEEEeCC--CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCC
Confidence            999998 44456666 666555543  22111 111110111223467999999998888775544

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.18  E-value=0.098  Score=45.39  Aligned_cols=165  Identities=13%  Similarity=0.073  Sum_probs=94.1

Q ss_pred             CcEEEEeCCCc-ceeeecCCCCeeEEEEeCCCCEEE-EEeCCCcEEEEecCCCCC--ceeeeecccccccceEEeccCCC
Q 043707          143 KNIRVWKNLKE-FSGFKSNSGLVKAIIITGDSNKIF-TGHQDGKIRIWKVSRKNP--SVHKRVGSLPTFKDYVKSSVNPK  218 (347)
Q Consensus       143 g~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~~~l~-s~~~Dg~I~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  218 (347)
                      ..|+..+.... ...+...-..+.+++|.+.+..|+ +-...+.|..+++.....  .....+.                
T Consensus        10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~----------------   73 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS----------------   73 (316)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC----------------
T ss_pred             CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe----------------
Confidence            45777775532 222333345678999998655554 445568899998875210  0000000                


Q ss_pred             eEEEEeecceeeeeecCCCeeEEEEcCCCCEE-EEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCC-CEEEEEeC
Q 043707          219 NYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLL-YSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSA  296 (347)
Q Consensus       219 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~-~~l~s~~~  296 (347)
                                    ........+++.+.+..| ++-...+.|.+.++........+.........+++.|. +.|+.+..
T Consensus        74 --------------~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~  139 (316)
T 1ijq_A           74 --------------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW  139 (316)
T ss_dssp             --------------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC
T ss_pred             --------------CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEcc
Confidence                          122345788898755544 45456789999998754333333333456789999984 55554443


Q ss_pred             -C-CcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          297 -D-GTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       297 -d-g~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                       . +.|...++.....   ..+.   ...-.....|+++++++.|+.+.
T Consensus       140 ~~~~~I~~~~~dG~~~---~~~~---~~~~~~P~gla~d~~~~~lY~~D  182 (316)
T 1ijq_A          140 GTPAKIKKGGLNGVDI---YSLV---TENIQWPNGITLDLLSGRLYWVD  182 (316)
T ss_dssp             SSSCEEEEEETTSCCE---EEEE---CSSCSCEEEEEEETTTTEEEEEE
T ss_pred             CCCCeEEEEcCCCCCe---EEEE---ECCCCCceEEEEeccCCEEEEEE
Confidence             2 6788887752211   1111   11234678999998877776654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.18  E-value=0.12  Score=46.27  Aligned_cols=150  Identities=8%  Similarity=0.108  Sum_probs=88.3

Q ss_pred             cEEEEeec--CC-EEEEecCCCcEEEEeCCCc-ceee-ecCCCCeeEEEEeCCCCE-EEEEeCCCcEEEEecCCCCCcee
Q 043707          125 HIYSLAAS--GD-LLYTGSDSKNIRVWKNLKE-FSGF-KSNSGLVKAIIITGDSNK-IFTGHQDGKIRIWKVSRKNPSVH  198 (347)
Q Consensus       125 ~V~~l~~~--~~-~l~tg~~dg~I~vwd~~~~-~~~~-~~h~~~V~~l~~sp~~~~-l~s~~~Dg~I~vwd~~~~~~~~~  198 (347)
                      ...+++++  ++ ++++-...+.|+.++.... ...+ .........+++.+.+.. +++-...+.|.+.+++.......
T Consensus       117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l  196 (386)
T 3v65_B          117 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL  196 (386)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEE
T ss_pred             ccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEe
Confidence            35556654  33 5555556778888886533 2222 222235678899875444 45555567788877764431111


Q ss_pred             eeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-C-CcEEEEeCCCCEEEEEEecC
Q 043707          199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-D-KTLKVWRISDCKCLESINAH  276 (347)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-d-g~i~vwdl~~~~~~~~~~~h  276 (347)
                      .                                .........|+++|.+..|+.... . +.|..+++............
T Consensus       197 ~--------------------------------~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~  244 (386)
T 3v65_B          197 L--------------------------------WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTH  244 (386)
T ss_dssp             E--------------------------------CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS
T ss_pred             e--------------------------------cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECC
Confidence            0                                012345678999987776666654 3 67888887543222222333


Q ss_pred             CCcEEEEEeCCC-CEE-EEEeCCCcEEEEEcc
Q 043707          277 DDAINSVVAGFD-SLV-FTGSADGTVKVWRRE  306 (347)
Q Consensus       277 ~~~v~~i~~~~~-~~l-~s~~~dg~I~vwd~~  306 (347)
                      -...+.|+++++ +.| ++-...+.|..+|+.
T Consensus       245 ~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d  276 (386)
T 3v65_B          245 LFWPNGLTIDYAGRRMYWVDAKHHVIERANLD  276 (386)
T ss_dssp             CSCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred             CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence            445788999865 444 444567789999876

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.14  E-value=0.049  Score=45.80  Aligned_cols=157  Identities=8%  Similarity=0.099  Sum_probs=91.2

Q ss_pred             eecCCCCeeEEEEeCCCCEEEE-EeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecC
Q 043707          157 FKSNSGLVKAIIITGDSNKIFT-GHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHY  235 (347)
Q Consensus       157 ~~~h~~~V~~l~~sp~~~~l~s-~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  235 (347)
                      +.+-...+..++|.|++..|++ ...++.|...|.. ++......+.                               -.
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~-------------------------------g~   69 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD-------------------------------FV   69 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS-------------------------------SC
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC-------------------------------CC
Confidence            3444467999999997665554 6677888888876 4422222111                               22


Q ss_pred             CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCE---EEEEEe------cCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEc
Q 043707          236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK---CLESIN------AHDDAINSVVAGFDS-LVFTGSADGTVKVWRR  305 (347)
Q Consensus       236 ~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~---~~~~~~------~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~  305 (347)
                      ...-.|++.+++.++++.-.++.+.++++....   .+....      ........|+|.|++ .|+++.......+|.+
T Consensus        70 ~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~  149 (255)
T 3qqz_A           70 KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKV  149 (255)
T ss_dssp             SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEE
T ss_pred             CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEE
Confidence            456678888888766665567889998876443   223332      123346899999986 5665655555556655


Q ss_pred             ccCCccceeeehh----hhhccCCcEEEEEEccCCCEEEEecCC
Q 043707          306 ELQGKGTKHFLAQ----VLLKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       306 ~~~~~~~~~~~~~----~~~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                      .............    .-..+...+.+|+++|....|+.-|..
T Consensus       150 ~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~  193 (255)
T 3qqz_A          150 NGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHE  193 (255)
T ss_dssp             ESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETT
T ss_pred             cccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECC
Confidence            4100000000110    001133467899999987666665543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.10  E-value=0.062  Score=49.05  Aligned_cols=140  Identities=8%  Similarity=0.016  Sum_probs=81.1

Q ss_pred             CEEEEecCCCcEEEEeC-CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCC----c-EEEEecCCCCCceeeeecccccc
Q 043707          134 DLLYTGSDSKNIRVWKN-LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDG----K-IRIWKVSRKNPSVHKRVGSLPTF  207 (347)
Q Consensus       134 ~~l~tg~~dg~I~vwd~-~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg----~-I~vwd~~~~~~~~~~~~~~~~~~  207 (347)
                      ..|+.+...+.|+.++. ...+..+........+|+++++++ |+.+...+    . +...+..... ....        
T Consensus       153 g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~-~~~~--------  222 (433)
T 4hw6_A          153 DDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGF-TERL--------  222 (433)
T ss_dssp             CEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTT-CCEE--------
T ss_pred             CEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCe-eccc--------
Confidence            45555544488999986 344444444445689999999998 44444322    1 2222211110 0000        


Q ss_pred             cceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCEEEEEE-ecC-CCcEEEEE
Q 043707          208 KDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESI-NAH-DDAINSVV  284 (347)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~vwdl~~~~~~~~~-~~h-~~~v~~i~  284 (347)
                                             ..........+++++ ++.++++-..++.|+.+|..+++....+ ... ...-..|+
T Consensus       223 -----------------------~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia  279 (433)
T 4hw6_A          223 -----------------------SLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIV  279 (433)
T ss_dssp             -----------------------EEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEE
T ss_pred             -----------------------cccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEE
Confidence                                   001223456688899 5665555556788999998877653333 211 22234699


Q ss_pred             eCCCC-EEE-EEeCCCcEEEEEcc
Q 043707          285 AGFDS-LVF-TGSADGTVKVWRRE  306 (347)
Q Consensus       285 ~~~~~-~l~-s~~~dg~I~vwd~~  306 (347)
                      ++|++ .|+ +-...+.|+.++..
T Consensus       280 ~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          280 WHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             EeCCCCEEEEEeCCCCEEEEEeCC
Confidence            99987 354 44567889998865

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.07  E-value=0.033  Score=48.48  Aligned_cols=158  Identities=5%  Similarity=0.010  Sum_probs=94.8

Q ss_pred             EEeec--CCEEEEe-cCCCcEEEEeCCCc-ceee--ec----CC--CCeeEEEE---eCCCCEEEEEe------------
Q 043707          128 SLAAS--GDLLYTG-SDSKNIRVWKNLKE-FSGF--KS----NS--GLVKAIII---TGDSNKIFTGH------------  180 (347)
Q Consensus       128 ~l~~~--~~~l~tg-~~dg~I~vwd~~~~-~~~~--~~----h~--~~V~~l~~---sp~~~~l~s~~------------  180 (347)
                      +..|+  ...|+.+ -..++|..|+.... ...+  ..    ..  ..+..|.|   .|+++++++..            
T Consensus        17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~   96 (334)
T 2p9w_A           17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSS   96 (334)
T ss_dssp             CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCS
T ss_pred             CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccccc
Confidence            45554  3444444 47899999986522 2222  11    11  13679999   68876666543            


Q ss_pred             -CCCcEEEEecC---CCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeee-cCCCeeEEEEcCCCCEEEEEeC
Q 043707          181 -QDGKIRIWKVS---RKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIR-HYDAVSCLSLNAEQGLLYSGSW  255 (347)
Q Consensus       181 -~Dg~I~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s~  255 (347)
                       .+..|..+|+.   +++......+.......                    ..+.+ -......++..++|+..++++.
T Consensus        97 ~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~--------------------~~~~g~~~~~~nDvavD~~GnaYVt~s~  156 (334)
T 2p9w_A           97 HGASSFHSFNLPLSENSKPVWSVNFEKVQDEF--------------------EKKAGKRPFGVVQSAQDRDGNSYVAFAL  156 (334)
T ss_dssp             SSCCEEEEEESSCCTTCCCSEEEESHHHHHHH--------------------HHHHSSCCEEEEEEEECTTSCEEEEEEE
T ss_pred             CCCCEEEEEcCCcCCCCCEEEEecCccccccc--------------------cccccccccCCceeEECCCCCEEEeCCC
Confidence             26779999998   66654443322110000                    00000 1123678999999999999888


Q ss_pred             C-CcEEEEeCCCCEEEEEEe------cCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcc
Q 043707          256 D-KTLKVWRISDCKCLESIN------AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRE  306 (347)
Q Consensus       256 d-g~i~vwdl~~~~~~~~~~------~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~  306 (347)
                      . +.|...+.. ++.+..+.      ......+.|+++|++ .|++...+|.|..+|+.
T Consensus       157 ~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          157 GMPAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             SSCEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             CCCeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence            8 887777754 33333321      112236789999998 66666559999999987

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.07  E-value=0.037  Score=52.75  Aligned_cols=56  Identities=16%  Similarity=0.077  Sum_probs=38.7

Q ss_pred             CCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCc
Q 043707          255 WDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGK  310 (347)
Q Consensus       255 ~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~  310 (347)
                      .+|.|..||+.+++.+-+.+.............+++++.++.|+.|+.||.++++.
T Consensus       451 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~  506 (599)
T 1w6s_A          451 GLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDL  506 (599)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             CcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCE
Confidence            35789999999999877665221111111122356888899999999999987654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.02  E-value=0.078  Score=46.17  Aligned_cols=165  Identities=7%  Similarity=0.003  Sum_probs=94.4

Q ss_pred             CCcEEEEeCCCc---ceeeecCCCCeeEEEEeCC-CCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCC
Q 043707          142 SKNIRVWKNLKE---FSGFKSNSGLVKAIIITGD-SNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNP  217 (347)
Q Consensus       142 dg~I~vwd~~~~---~~~~~~h~~~V~~l~~sp~-~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (347)
                      ...|+..++...   ..........+.+++|.+. +..+++-...+.|..+++..........                 
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~-----------------   74 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV-----------------   74 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEE-----------------
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEE-----------------
Confidence            356777775432   1111112235678999985 4444555567788888887653111000                 


Q ss_pred             CeEEEEeecceeeeeecCCCeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCC-CEEEEEe
Q 043707          218 KNYVEVRRNRNVLKIRHYDAVSCLSLNAEQG-LLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGS  295 (347)
Q Consensus       218 ~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~-~~l~s~~  295 (347)
                                    .........+++.+.+. ++++-...+.|.++++........+.........|++.|. +.|+.+.
T Consensus        75 --------------~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td  140 (318)
T 3sov_A           75 --------------VSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTD  140 (318)
T ss_dssp             --------------EECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEE
T ss_pred             --------------cCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEe
Confidence                          01223456788887544 4455455788999998643322223234456788999875 5555554


Q ss_pred             --CCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          296 --ADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       296 --~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                        ..+.|...++.....  . .+   ....-...+.|+|+++++.|+.+.
T Consensus       141 ~~~~~~I~r~~~dG~~~--~-~~---~~~~l~~Pnglavd~~~~~lY~aD  184 (318)
T 3sov_A          141 WGEVPKIERAGMDGSSR--F-II---INSEIYWPNGLTLDYEEQKLYWAD  184 (318)
T ss_dssp             CSSSCEEEEEETTSCSC--E-EE---ECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             cCCCCEEEEEEcCCCCe--E-EE---EECCCCCccEEEEeccCCEEEEEE
Confidence              357788777752211  1 11   111234578999999877776654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.02  E-value=0.067  Score=48.17  Aligned_cols=156  Identities=12%  Similarity=0.125  Sum_probs=90.8

Q ss_pred             ecCCEEEEecCCCcEEEEeCC--CcceeeecC----CCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeeccc
Q 043707          131 ASGDLLYTGSDSKNIRVWKNL--KEFSGFKSN----SGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSL  204 (347)
Q Consensus       131 ~~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h----~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~  204 (347)
                      -+|.-++.+- ++.||.-+..  ...+.+..-    -..|..+..+|+|++||..+ +..|.|-.+..+...........
T Consensus        30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~  107 (452)
T 3pbp_A           30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQD  107 (452)
T ss_dssp             TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHH
T ss_pred             cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccccc
Confidence            3444444443 2566666643  224443332    12678899999999988886 55899998874321111000000


Q ss_pred             ccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC---CCEEEEEeCCCcEEEEeCCCC--EEEEEEe-----
Q 043707          205 PTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE---QGLLYSGSWDKTLKVWRISDC--KCLESIN-----  274 (347)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~---~~~l~s~s~dg~i~vwdl~~~--~~~~~~~-----  274 (347)
                      +.            ......-+..  .......|..+.|||-   +..|++-..|++|++||+...  ++. .++     
T Consensus       108 ~~------------q~~ty~l~~~--~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~  172 (452)
T 3pbp_A          108 AF------------QIFHYSIDEE--EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNS  172 (452)
T ss_dssp             TT------------EEEEEEGGGC--C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSE
T ss_pred             cc------------ceeEEEcCCc--ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccc
Confidence            00            0000000000  0114678999999994   578999999999999999752  222 332     


Q ss_pred             ----cCCCcEEEEEeCCCC---EEEEEeCCCcEEEE
Q 043707          275 ----AHDDAINSVVAGFDS---LVFTGSADGTVKVW  303 (347)
Q Consensus       275 ----~h~~~v~~i~~~~~~---~l~s~~~dg~I~vw  303 (347)
                          .....|.+++|..++   ++++...+|.|+-.
T Consensus       173 fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          173 FGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             cCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence                223568899999887   45556688887654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.01  E-value=0.04  Score=53.22  Aligned_cols=67  Identities=16%  Similarity=0.239  Sum_probs=43.3

Q ss_pred             EEee-cCCEEEEecCCC-----------cEEEEeCCCc----ceeee-cCCCCeeEEEEeCCCCEEEEEeC-CCcEEEEe
Q 043707          128 SLAA-SGDLLYTGSDSK-----------NIRVWKNLKE----FSGFK-SNSGLVKAIIITGDSNKIFTGHQ-DGKIRIWK  189 (347)
Q Consensus       128 ~l~~-~~~~l~tg~~dg-----------~I~vwd~~~~----~~~~~-~h~~~V~~l~~sp~~~~l~s~~~-Dg~I~vwd  189 (347)
                      ++.+ ++++++.|+.+.           .+.+||....    +..+. .+.....++++..+++.++.|+. +..+.+||
T Consensus       192 av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd  271 (656)
T 1k3i_A          192 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYD  271 (656)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred             EEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEec
Confidence            4444 677888876543           5788885432    22221 13333445778889999999984 56899999


Q ss_pred             cCCCC
Q 043707          190 VSRKN  194 (347)
Q Consensus       190 ~~~~~  194 (347)
                      ..+.+
T Consensus       272 ~~t~~  276 (656)
T 1k3i_A          272 SSSDS  276 (656)
T ss_dssp             GGGTE
T ss_pred             CcCCc
Confidence            88653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.98  E-value=0.19  Score=45.18  Aligned_cols=153  Identities=8%  Similarity=0.089  Sum_probs=92.5

Q ss_pred             cccEEEEeec--CC-EEEEecCCCcEEEEeCCC-----cceee-ecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCC
Q 043707          123 EGHIYSLAAS--GD-LLYTGSDSKNIRVWKNLK-----EFSGF-KSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSR  192 (347)
Q Consensus       123 ~~~V~~l~~~--~~-~l~tg~~dg~I~vwd~~~-----~~~~~-~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~  192 (347)
                      ...+.+++++  ++ ++.+-...+.|+.++...     ....+ ...-.....|++.+ .++.+++-...+.|.+.+++.
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g  190 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  190 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence            3456677765  34 444545667888887543     12222 22335678899998 444555555677888888875


Q ss_pred             CCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC--CCcEEEEeCCCCEEE
Q 043707          193 KNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW--DKTLKVWRISDCKCL  270 (347)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--dg~i~vwdl~~~~~~  270 (347)
                      .......                                .........|+++|.+..|+...+  .+.|...++......
T Consensus       191 ~~~~~l~--------------------------------~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~  238 (400)
T 3p5b_L          191 VKRKTLF--------------------------------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  238 (400)
T ss_dssp             CSEEEEE--------------------------------ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE
T ss_pred             CceEEEE--------------------------------eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE
Confidence            4311110                                012345678999997777776654  367888888643332


Q ss_pred             EEEecCCCcEEEEEeCCCC-EEEEE-eCCCcEEEEEccc
Q 043707          271 ESINAHDDAINSVVAGFDS-LVFTG-SADGTVKVWRREL  307 (347)
Q Consensus       271 ~~~~~h~~~v~~i~~~~~~-~l~s~-~~dg~I~vwd~~~  307 (347)
                      ..+...-...+.|++.+++ .|+.+ ...+.|..+|+..
T Consensus       239 ~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG  277 (400)
T 3p5b_L          239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  277 (400)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence            2233333567899999764 55444 4577899999863

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.97  E-value=0.0078  Score=57.17  Aligned_cols=31  Identities=26%  Similarity=0.270  Sum_probs=27.1

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCEEEEEEecC
Q 043707          246 EQGLLYSGSWDKTLKVWRISDCKCLESINAH  276 (347)
Q Consensus       246 ~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h  276 (347)
                      .+.+++.++.|+.|++||.++++.+.+++..
T Consensus       474 ~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~  504 (571)
T 2ad6_A          474 KGGLVWYATLDGYLKALDNKDGKELWNFKMP  504 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CCCEEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence            4678888999999999999999999888754

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.95  E-value=0.18  Score=44.58  Aligned_cols=171  Identities=11%  Similarity=0.096  Sum_probs=93.8

Q ss_pred             CCCcEEEEeCCCc---cee--eec-----CCCCeeEEEEeC--CCC-EEEEE-eC--CCcEEEEecCCCCCceeeeeccc
Q 043707          141 DSKNIRVWKNLKE---FSG--FKS-----NSGLVKAIIITG--DSN-KIFTG-HQ--DGKIRIWKVSRKNPSVHKRVGSL  204 (347)
Q Consensus       141 ~dg~I~vwd~~~~---~~~--~~~-----h~~~V~~l~~sp--~~~-~l~s~-~~--Dg~I~vwd~~~~~~~~~~~~~~~  204 (347)
                      .+|.|.++|..+.   ...  +.+     .......|.+.+  ++. +|+.+ ..  +.+|.+|+++....... .+...
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~-~~~~~  159 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLL-HLKTI  159 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEE-EEEEE
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEE-EEecc
Confidence            6899999996521   111  111     234567777765  343 34433 33  45677777765432111 00000


Q ss_pred             ccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-----------------CCcEEEEeCCCC
Q 043707          205 PTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-----------------DKTLKVWRISDC  267 (347)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-----------------dg~i~vwdl~~~  267 (347)
                      .                          -......+.+.+.++|.++++...                 .|.+..+|.  +
T Consensus       160 ~--------------------------g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~  211 (355)
T 3sre_A          160 R--------------------------HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--N  211 (355)
T ss_dssp             C--------------------------CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--T
T ss_pred             c--------------------------cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--C
Confidence            0                          012235678888888887776541                 244555554  3


Q ss_pred             EEEEEEecCCCcEEEEEeCCCC-EE-EEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEcc-CCCEEEEecC
Q 043707          268 KCLESINAHDDAINSVVAGFDS-LV-FTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQ-ESAVVYCGSS  344 (347)
Q Consensus       268 ~~~~~~~~h~~~v~~i~~~~~~-~l-~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~sgs~  344 (347)
                      + +..+...-..-+.|+|+||+ .| ++-+..+.|..|++...+.....   ..+ ......-.+++.+ +|++.+++..
T Consensus       212 ~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~---~~~-~~~g~PDGi~vD~e~G~lwva~~~  286 (355)
T 3sre_A          212 D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPL---RVL-SFDTLVDNISVDPVTGDLWVGCHP  286 (355)
T ss_dssp             C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEE---EEE-ECSSEEEEEEECTTTCCEEEEEES
T ss_pred             e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecC---EEE-eCCCCCceEEEeCCCCcEEEEecC
Confidence            2 22222223456899999998 44 45556889999998643321111   111 2245678899999 5888776643


Q ss_pred             C
Q 043707          345 D  345 (347)
Q Consensus       345 D  345 (347)
                      +
T Consensus       287 ~  287 (355)
T 3sre_A          287 N  287 (355)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.82  E-value=0.16  Score=43.58  Aligned_cols=111  Identities=14%  Similarity=0.121  Sum_probs=69.4

Q ss_pred             CCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEE
Q 043707          162 GLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCL  241 (347)
Q Consensus       162 ~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  241 (347)
                      .....++|.++++.+++-..++.|..||..... ..  ..                               .....+..+
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~--~~-------------------------------~~~~~p~gi   77 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QI--HA-------------------------------TVEGKVSGL   77 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EE--EE-------------------------------ECSSEEEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-EE--EE-------------------------------eCCCCceeE
Confidence            457789999998877776678899988876431 10  00                               122357789


Q ss_pred             EEcCCCCEEEEEeCCC--cEEEEeCCCCEEEEEEec-CCCcEEEEEeCCCCEEEEEe-CCCcEEEEEcc
Q 043707          242 SLNAEQGLLYSGSWDK--TLKVWRISDCKCLESINA-HDDAINSVVAGFDSLVFTGS-ADGTVKVWRRE  306 (347)
Q Consensus       242 ~~~~~~~~l~s~s~dg--~i~vwdl~~~~~~~~~~~-h~~~v~~i~~~~~~~l~s~~-~dg~I~vwd~~  306 (347)
                      ++.++++++++.....  .|..+|..+++....... .......++..+++.++... .++.|.++|..
T Consensus        78 a~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~  146 (306)
T 2p4o_A           78 AFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVV  146 (306)
T ss_dssp             EECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETT
T ss_pred             EEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCC
Confidence            9999998666554322  477778777765433221 12233445555566544444 58888888875

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.81  E-value=0.24  Score=43.65  Aligned_cols=150  Identities=8%  Similarity=0.110  Sum_probs=89.7

Q ss_pred             cEEEEeec--CC-EEEEecCCCcEEEEeCCCc-ceee-ecCCCCeeEEEEeCCCC-EEEEEeCCCcEEEEecCCCCCcee
Q 043707          125 HIYSLAAS--GD-LLYTGSDSKNIRVWKNLKE-FSGF-KSNSGLVKAIIITGDSN-KIFTGHQDGKIRIWKVSRKNPSVH  198 (347)
Q Consensus       125 ~V~~l~~~--~~-~l~tg~~dg~I~vwd~~~~-~~~~-~~h~~~V~~l~~sp~~~-~l~s~~~Dg~I~vwd~~~~~~~~~  198 (347)
                      ...+++++  .+ ++++-...+.|+.++.... ...+ .........+++.+.+. .+++-...+.|.+.+++.......
T Consensus        74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l  153 (349)
T 3v64_C           74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL  153 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEE
Confidence            35566654  33 4455556788888885533 2222 22224567899998544 445555677899988875432111


Q ss_pred             eeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-C-CcEEEEeCCCCEEEEEE-ec
Q 043707          199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-D-KTLKVWRISDCKCLESI-NA  275 (347)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-d-g~i~vwdl~~~~~~~~~-~~  275 (347)
                      .                                .........++++|.+..|+.... . +.|...++... ....+ ..
T Consensus       154 ~--------------------------------~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~  200 (349)
T 3v64_C          154 L--------------------------------WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADT  200 (349)
T ss_dssp             E--------------------------------CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEESCCS
T ss_pred             E--------------------------------eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEEEC
Confidence            0                                012345678999997666666554 3 67888887543 22232 22


Q ss_pred             CCCcEEEEEeCCC-CEEE-EEeCCCcEEEEEccc
Q 043707          276 HDDAINSVVAGFD-SLVF-TGSADGTVKVWRREL  307 (347)
Q Consensus       276 h~~~v~~i~~~~~-~~l~-s~~~dg~I~vwd~~~  307 (347)
                      .-...+.|+++++ +.|+ +-...+.|..+|+..
T Consensus       201 ~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG  234 (349)
T 3v64_C          201 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG  234 (349)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            3345788999975 4444 445677899999863

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.79  E-value=0.28  Score=48.37  Aligned_cols=168  Identities=13%  Similarity=0.052  Sum_probs=95.8

Q ss_pred             CCcEEEEeCCC-cceeeecCCCCeeEEEEeCCCCE-EEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCe
Q 043707          142 SKNIRVWKNLK-EFSGFKSNSGLVKAIIITGDSNK-IFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKN  219 (347)
Q Consensus       142 dg~I~vwd~~~-~~~~~~~h~~~V~~l~~sp~~~~-l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (347)
                      ...|+..++.. ....+......+.+|+|.+.... +++-...+.|+.+++.........                    
T Consensus       403 ~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~--------------------  462 (791)
T 3m0c_C          403 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY--------------------  462 (791)
T ss_dssp             BSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C--------------------
T ss_pred             ccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcce--------------------
Confidence            35677776542 23333444567889999985444 445555678888888653210000                    


Q ss_pred             EEEEeecceeeeeecCCCeeEEEEcCCCCEEEE-EeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCC-CEEEEEeC-
Q 043707          220 YVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYS-GSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSA-  296 (347)
Q Consensus       220 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~-~~l~s~~~-  296 (347)
                              ..+..........|++.+.++.|+. -...+.|.+.++........+.........|++.|. +.|+.... 
T Consensus       463 --------~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g  534 (791)
T 3m0c_C          463 --------DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG  534 (791)
T ss_dssp             --------EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS
T ss_pred             --------eEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC
Confidence                    0000012345667999887655554 445788999998755433333334456789999886 55555442 


Q ss_pred             -CCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          297 -DGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       297 -dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                       .+.|.+.++.....      ...+...-.....|++++.+..|+.+-
T Consensus       535 ~~~~I~~~~~dG~~~------~~lv~~~l~~P~GLavD~~~~~LYwaD  576 (791)
T 3m0c_C          535 TPAKIKKGGLNGVDI------YSLVTENIQWPNGITLDLLSGRLYWVD  576 (791)
T ss_dssp             SSCEEEEEETTSCCE------EEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             CCCeEEEEecCCCce------EEEEeCCCCCceEEEEecCCCeEEEEe
Confidence             36788877752211      111112234688899998777776653

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.62  E-value=0.3  Score=42.28  Aligned_cols=149  Identities=9%  Similarity=0.116  Sum_probs=89.8

Q ss_pred             cEEEEeec--CC-EEEEecCCCcEEEEeCCC-----cceee-ecCCCCeeEEEEeCCCCEE-EEEeCCCcEEEEecCCCC
Q 043707          125 HIYSLAAS--GD-LLYTGSDSKNIRVWKNLK-----EFSGF-KSNSGLVKAIIITGDSNKI-FTGHQDGKIRIWKVSRKN  194 (347)
Q Consensus       125 ~V~~l~~~--~~-~l~tg~~dg~I~vwd~~~-----~~~~~-~~h~~~V~~l~~sp~~~~l-~s~~~Dg~I~vwd~~~~~  194 (347)
                      ...++.++  ++ ++++-..++.|+.++...     ....+ ...-.....+++.+.+..| ++-...+.|.+.+++...
T Consensus        31 ~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~  110 (316)
T 1ijq_A           31 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK  110 (316)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS
T ss_pred             ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCc
Confidence            44566654  34 555556678899988653     22222 2222456889998754444 455667889998886542


Q ss_pred             CceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCC--CcEEEEeCCCCEEEEE
Q 043707          195 PSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWD--KTLKVWRISDCKCLES  272 (347)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d--g~i~vwdl~~~~~~~~  272 (347)
                      .....                                .........++++|.+..|+.....  +.|...++. ++....
T Consensus       111 ~~~~~--------------------------------~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~  157 (316)
T 1ijq_A          111 RKTLF--------------------------------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYS  157 (316)
T ss_dssp             EEEEE--------------------------------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEE
T ss_pred             eEEEE--------------------------------ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEE
Confidence            11100                                0123456789999977766666653  678888875 333333


Q ss_pred             E-ecCCCcEEEEEeCCCC-EEE-EEeCCCcEEEEEcc
Q 043707          273 I-NAHDDAINSVVAGFDS-LVF-TGSADGTVKVWRRE  306 (347)
Q Consensus       273 ~-~~h~~~v~~i~~~~~~-~l~-s~~~dg~I~vwd~~  306 (347)
                      + ...-...+.|++.+++ .|+ +-...+.|..+|+.
T Consensus       158 ~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d  194 (316)
T 1ijq_A          158 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  194 (316)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence            3 2234567899999764 444 44567799999986

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.62  E-value=0.011  Score=56.33  Aligned_cols=49  Identities=14%  Similarity=0.165  Sum_probs=35.0

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcE-EEEEeCCCC--EEEEE
Q 043707          246 EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAI-NSVVAGFDS--LVFTG  294 (347)
Q Consensus       246 ~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v-~~i~~~~~~--~l~s~  294 (347)
                      .+.+++.++.|+.++.||.++++.+-+++.....+ .-+.+..++  ++++.
T Consensus       496 agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~  547 (582)
T 1flg_A          496 AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEE
Confidence            46788889999999999999999999987644322 124454566  44433

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.60  E-value=0.093  Score=46.39  Aligned_cols=103  Identities=15%  Similarity=0.204  Sum_probs=59.5

Q ss_pred             CCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEE
Q 043707          162 GLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCL  241 (347)
Q Consensus       162 ~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  241 (347)
                      .....|+|.|+|++ +.+..+|.|++++  .++.   ..+...+                        ...........|
T Consensus        31 ~~P~~ia~~pdG~l-~V~e~~g~I~~i~--~g~~---~~~~~~~------------------------v~~~g~~~p~gi   80 (352)
T 2ism_A           31 EVPWALAFLPDGGM-LIAERPGRIRLFR--EGRL---STYAELS------------------------VYHRGESGLLGL   80 (352)
T ss_dssp             SCEEEEEECTTSCE-EEEETTTEEEEEE--TTEE---EEEEECC------------------------CCCSTTCSEEEE
T ss_pred             CCceEEEEcCCCeE-EEEeCCCeEEEEE--CCCc---cEeecce------------------------EeecCCCCceeE
Confidence            34679999999974 5556679999988  3321   1111000                        000124567889


Q ss_pred             EEcCC---CCEEEEEeC-C-----CcEEEEeCCCC-----EEE-EEEec---CCCcEEEEEeCCCCEEEEE
Q 043707          242 SLNAE---QGLLYSGSW-D-----KTLKVWRISDC-----KCL-ESINA---HDDAINSVVAGFDSLVFTG  294 (347)
Q Consensus       242 ~~~~~---~~~l~s~s~-d-----g~i~vwdl~~~-----~~~-~~~~~---h~~~v~~i~~~~~~~l~s~  294 (347)
                      +++|+   +..|+.+.. .     +.|..|++...     +.+ ..+..   .......|+|.||+.|+.+
T Consensus        81 a~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~  151 (352)
T 2ism_A           81 ALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVT  151 (352)
T ss_dssp             EECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEE
T ss_pred             EECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEE
Confidence            99998   555555543 2     56888887643     122 22331   1123468999999955544

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.60  E-value=0.64  Score=45.79  Aligned_cols=151  Identities=7%  Similarity=0.071  Sum_probs=91.3

Q ss_pred             ccEEEEeec---CCEEEEecCCCcEEEEeCCCc------ceeeecCCCCeeEEEEeCCCCEE-EEEeCCCcEEEEecCCC
Q 043707          124 GHIYSLAAS---GDLLYTGSDSKNIRVWKNLKE------FSGFKSNSGLVKAIIITGDSNKI-FTGHQDGKIRIWKVSRK  193 (347)
Q Consensus       124 ~~V~~l~~~---~~~l~tg~~dg~I~vwd~~~~------~~~~~~h~~~V~~l~~sp~~~~l-~s~~~Dg~I~vwd~~~~  193 (347)
                      ..+.+|+++   +.++++-...+.|+.+++...      ...+.........|++.+.++.| ++-...+.|.+.+++..
T Consensus       424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~  503 (791)
T 3m0c_C          424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  503 (791)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC
Confidence            345566654   335555556677888875431      12222233567789999866544 45556788988888754


Q ss_pred             CCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCC--CcEEEEeCCCCEEEE
Q 043707          194 NPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWD--KTLKVWRISDCKCLE  271 (347)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d--g~i~vwdl~~~~~~~  271 (347)
                      ......                                .........|+++|.+..|+...+.  +.|.+.++.......
T Consensus       504 ~~~~l~--------------------------------~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~  551 (791)
T 3m0c_C          504 KRKTLF--------------------------------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS  551 (791)
T ss_dssp             SEEEEE--------------------------------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred             eEEEEE--------------------------------eCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE
Confidence            311110                                0133457889999987777776643  678888886444333


Q ss_pred             EEecCCCcEEEEEeCCC-CEEEEE-eCCCcEEEEEcc
Q 043707          272 SINAHDDAINSVVAGFD-SLVFTG-SADGTVKVWRRE  306 (347)
Q Consensus       272 ~~~~h~~~v~~i~~~~~-~~l~s~-~~dg~I~vwd~~  306 (347)
                      .+...-...+.|++.+. +.|+.+ ...+.|...++.
T Consensus       552 lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d  588 (791)
T 3m0c_C          552 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  588 (791)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecC
Confidence            33333456888999865 455544 456788888886

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.57  E-value=0.11  Score=42.30  Aligned_cols=147  Identities=6%  Similarity=-0.042  Sum_probs=78.3

Q ss_pred             CeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeec--CCCeeE
Q 043707          163 LVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRH--YDAVSC  240 (347)
Q Consensus       163 ~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~  240 (347)
                      .+.+++|+|++.+.+.  .+|.+.-.+..+..........                           ..++.  -..-.+
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~---------------------------t~IG~~Gw~~F~a   92 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA---------------------------KKIGNGGWNQFQF   92 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC---------------------------EEEECSCGGGCSE
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc---------------------------cEecccccccceE
Confidence            6789999999875555  6776555554332211100000                           00000  011467


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCEEE------EEE-ecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccce
Q 043707          241 LSLNAEQGLLYSGSWDKTLKVWRISDCKCL------ESI-NAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTK  313 (347)
Q Consensus       241 l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~------~~~-~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~  313 (347)
                      +.|.+++.+.++  .||.|+-++-.+...-      ..+ ..-=..+..|.+.|+|.|.+.. |+.++-+....... ..
T Consensus        93 ~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~-~~  168 (236)
T 1tl2_A           93 LFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQ-DN  168 (236)
T ss_dssp             EEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTT-CC
T ss_pred             EEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEecCCCCCCC-cc
Confidence            899999988887  4698887775331100      111 1111457899999999888777 88854322221110 01


Q ss_pred             eeehhhhh--ccCCcEEEEEEccCCCEEEEe
Q 043707          314 HFLAQVLL--KQENAITALAVNQESAVVYCG  342 (347)
Q Consensus       314 ~~~~~~~~--~h~~~V~~l~~~p~~~~l~sg  342 (347)
                      ........  ......+-+.|.+++.+.++.
T Consensus       169 wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~  199 (236)
T 1tl2_A          169 WLARATKIGQGGWDTFKFLFFSSVGTLFGVQ  199 (236)
T ss_dssp             HHHHCEEEESSSGGGEEEEEECTTSCEEEEE
T ss_pred             cccccceeccCCcceEEEEEECCCCcEEEEe
Confidence            10011111  122245567788888776655

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.55  E-value=0.34  Score=42.08  Aligned_cols=149  Identities=10%  Similarity=0.087  Sum_probs=91.2

Q ss_pred             cEEEEeec---CCEEEEecCCCcEEEEeCCCcc---eeeecCCCCeeEEEEeCC-CCEEEEEeCCCcEEEEecCCCCCce
Q 043707          125 HIYSLAAS---GDLLYTGSDSKNIRVWKNLKEF---SGFKSNSGLVKAIIITGD-SNKIFTGHQDGKIRIWKVSRKNPSV  197 (347)
Q Consensus       125 ~V~~l~~~---~~~l~tg~~dg~I~vwd~~~~~---~~~~~h~~~V~~l~~sp~-~~~l~s~~~Dg~I~vwd~~~~~~~~  197 (347)
                      ...+++++   +.++.+-...+.|+.++.....   ..+...-.....+++.+. +..+++-...+.|.+++++......
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  115 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV  115 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence            45566664   4455566667889888854331   122222345778999974 4445555567789999887543211


Q ss_pred             eeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC--CCcEEEEeCCCCEEEEEE-e
Q 043707          198 HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW--DKTLKVWRISDCKCLESI-N  274 (347)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--dg~i~vwdl~~~~~~~~~-~  274 (347)
                      ...                                ........++++|.+..|+...+  .+.|...++.. +....+ .
T Consensus       116 l~~--------------------------------~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~  162 (318)
T 3sov_A          116 LFW--------------------------------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIIN  162 (318)
T ss_dssp             EEC--------------------------------SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEEC
T ss_pred             EEe--------------------------------CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEE
Confidence            100                                13345678999987667776664  46788888753 222222 2


Q ss_pred             cCCCcEEEEEeCCC-CEEE-EEeCCCcEEEEEcc
Q 043707          275 AHDDAINSVVAGFD-SLVF-TGSADGTVKVWRRE  306 (347)
Q Consensus       275 ~h~~~v~~i~~~~~-~~l~-s~~~dg~I~vwd~~  306 (347)
                      ..-...+.|+++++ +.|+ +=...+.|..+|+.
T Consensus       163 ~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d  196 (318)
T 3sov_A          163 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD  196 (318)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCC
Confidence            23345688999985 4444 44567889999986

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.39  E-value=0.046  Score=52.90  Aligned_cols=170  Identities=13%  Similarity=0.138  Sum_probs=93.7

Q ss_pred             CCEEEEecCCCcEEEEeCC--CcceeeecCC----CCeeE-EEEeCCCCEEEEEeC------CCcEEEEecCCCCCceee
Q 043707          133 GDLLYTGSDSKNIRVWKNL--KEFSGFKSNS----GLVKA-IIITGDSNKIFTGHQ------DGKIRIWKVSRKNPSVHK  199 (347)
Q Consensus       133 ~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~----~~V~~-l~~sp~~~~l~s~~~------Dg~I~vwd~~~~~~~~~~  199 (347)
                      +..++.++.|+.|+.+|..  +.+..+....    ..+.+ ..+. ++ .++.+..      +|.|+.+|.++++..-..
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  194 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRF  194 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence            5578888889999999854  3333333210    11111 1111 33 5555543      589999999999865443


Q ss_pred             eec-cccccc---ceEEeccCCCeEEEEeeccee-eeeecCCCeeEEEEcCCCCEEEEEeCCCc----------------
Q 043707          200 RVG-SLPTFK---DYVKSSVNPKNYVEVRRNRNV-LKIRHYDAVSCLSLNAEQGLLYSGSWDKT----------------  258 (347)
Q Consensus       200 ~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~dg~----------------  258 (347)
                      ... ..+...   ..+.....      .+..... ....+......+++.++..+++.+..++.                
T Consensus       195 ~~~~~~p~~~~~~~~~~~~~~------~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~  268 (668)
T 1kv9_A          195 YTVPGDPALPYEHPELREAAK------TWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLY  268 (668)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHT------TCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred             cccCCCCCccccccccccccc------cCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCcee
Confidence            321 111000   00000000      0000000 00012233345788888888988887763                


Q ss_pred             ---EEEEeCCCCEEEEEEec--CC-------CcEEEEEeCCCC----EEEEEeCCCcEEEEEcccCCc
Q 043707          259 ---LKVWRISDCKCLESINA--HD-------DAINSVVAGFDS----LVFTGSADGTVKVWRRELQGK  310 (347)
Q Consensus       259 ---i~vwdl~~~~~~~~~~~--h~-------~~v~~i~~~~~~----~l~s~~~dg~I~vwd~~~~~~  310 (347)
                         |..+|.++++.+-.++.  |.       .+.....+..++    .++.++.+|.++++|.++++.
T Consensus       269 ~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  336 (668)
T 1kv9_A          269 LSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (668)
T ss_dssp             TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             eeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence               99999999999887764  32       222222222244    588899999999999986653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=95.97  E-value=0.1  Score=47.55  Aligned_cols=142  Identities=4%  Similarity=-0.001  Sum_probs=77.5

Q ss_pred             CeeEEEEeCC--CCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeE
Q 043707          163 LVKAIIITGD--SNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSC  240 (347)
Q Consensus       163 ~V~~l~~sp~--~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  240 (347)
                      ....|+|.|+  ...|+.+...+.|+.+|..++......                                 ........
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~---------------------------------~~~~~P~g  186 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT---------------------------------TNIGQCAD  186 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC---------------------------------CCCSCEEE
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee---------------------------------cCCCCccE
Confidence            3568999984  445666655588888888665421110                                 13345789


Q ss_pred             EEEcCCCCEEEEEeCCC----c-EEEEeCCCCEE-EEEEecCCCcEEEEEeCC-CCEEEEE-eCCCcEEEEEcccCCccc
Q 043707          241 LSLNAEQGLLYSGSWDK----T-LKVWRISDCKC-LESINAHDDAINSVVAGF-DSLVFTG-SADGTVKVWRRELQGKGT  312 (347)
Q Consensus       241 l~~~~~~~~l~s~s~dg----~-i~vwdl~~~~~-~~~~~~h~~~v~~i~~~~-~~~l~s~-~~dg~I~vwd~~~~~~~~  312 (347)
                      |+++++++ |+.+...+    . +...+...+.. ...+. .-.....+++++ ++.|+.+ ..++.|+.+|...+... 
T Consensus       187 iavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~-  263 (433)
T 4hw6_A          187 VNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT-  263 (433)
T ss_dssp             EEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE-
T ss_pred             EEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE-
Confidence            99999999 55554322    1 33333221110 01121 223346678888 6755544 46778888887633210 


Q ss_pred             eeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          313 KHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       313 ~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                       ..+. .. .....-..|+|+|+++.|+.+.
T Consensus       264 -~~~~-~~-~~~~~~~~ia~dpdG~~LYvad  291 (433)
T 4hw6_A          264 -EEEV-MM-DTKGSNFHIVWHPTGDWAYIIY  291 (433)
T ss_dssp             -EEEE-EC-SCCSSCEEEEECTTSSEEEEEE
T ss_pred             -EEEe-cc-CCCCCcccEEEeCCCCEEEEEe
Confidence             0011 11 1112234799999998666554

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.87  E-value=0.44  Score=42.06  Aligned_cols=103  Identities=16%  Similarity=0.157  Sum_probs=58.5

Q ss_pred             CCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEE
Q 043707          162 GLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCL  241 (347)
Q Consensus       162 ~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  241 (347)
                      .....|+|.|+|+ |+.+..+|.|+++|. .++    ..+..++.                        ..........|
T Consensus        29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~----~~~~~~~v------------------------~~~g~~g~~gi   78 (354)
T 3a9g_A           29 EVPWSIAPLGGGR-YLVTERPGRLVLISP-SGK----KLVASFDV------------------------ANVGEAGLLGL   78 (354)
T ss_dssp             SCEEEEEEEETTE-EEEEETTTEEEEECS-SCE----EEEEECCC------------------------CCSTTCSEEEE
T ss_pred             CCCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCc----eEeeccce------------------------eecCCCceeeE
Confidence            3567999999996 555666799998873 332    11111100                        00123457889


Q ss_pred             EEcCC---CCEEEEEeC----C----CcEEEEeCCCC-------EEE-EEEec-CCCcEEEEEeCCCCEEEEE
Q 043707          242 SLNAE---QGLLYSGSW----D----KTLKVWRISDC-------KCL-ESINA-HDDAINSVVAGFDSLVFTG  294 (347)
Q Consensus       242 ~~~~~---~~~l~s~s~----d----g~i~vwdl~~~-------~~~-~~~~~-h~~~v~~i~~~~~~~l~s~  294 (347)
                      +++|+   +..|+.+..    +    ..|..|++...       +.+ ..+.. .......|+|.||+.|+.+
T Consensus        79 a~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt  151 (354)
T 3a9g_A           79 ALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYIT  151 (354)
T ss_dssp             EECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEE
T ss_pred             EeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEE
Confidence            99997   555555443    2    56777776543       112 22321 1123467899999954444

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.86  E-value=0.3  Score=43.09  Aligned_cols=29  Identities=17%  Similarity=0.378  Sum_probs=22.5

Q ss_pred             CeeEEEEeCCCCEEEEEeCCCcEEEEecC
Q 043707          163 LVKAIIITGDSNKIFTGHQDGKIRIWKVS  191 (347)
Q Consensus       163 ~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~  191 (347)
                      ....|+|.|+|+.|+.+...|.|++++..
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~   47 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG   47 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC
Confidence            46799999999845566678999988753

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=95.83  E-value=1.3  Score=42.05  Aligned_cols=70  Identities=13%  Similarity=0.064  Sum_probs=48.0

Q ss_pred             EEEEcCCCCEEEEEeCC----------------CcEEEEeCCCCEEEEEEecCCC----------cEEEEEeC-CCC---
Q 043707          240 CLSLNAEQGLLYSGSWD----------------KTLKVWRISDCKCLESINAHDD----------AINSVVAG-FDS---  289 (347)
Q Consensus       240 ~l~~~~~~~~l~s~s~d----------------g~i~vwdl~~~~~~~~~~~h~~----------~v~~i~~~-~~~---  289 (347)
                      .+++.++..+++.+..+                +.|..+|.++++.+-.++....          ++. +... .++   
T Consensus       245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~  323 (599)
T 1w6s_A          245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKAR  323 (599)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEE
T ss_pred             ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEE
Confidence            35566777788888765                3799999999999877764221          121 2221 344   


Q ss_pred             -EEEEEeCCCcEEEEEcccCCc
Q 043707          290 -LVFTGSADGTVKVWRRELQGK  310 (347)
Q Consensus       290 -~l~s~~~dg~I~vwd~~~~~~  310 (347)
                       .++.++.+|.+.++|.++++.
T Consensus       324 ~~v~~~~~~G~l~~lD~~tG~~  345 (599)
T 1w6s_A          324 KLLTHPDRNGIVYTLDRTDGAL  345 (599)
T ss_dssp             EEEEEECTTSEEEEEETTTCCE
T ss_pred             EEEEEECCCcEEEEEECCCCCE
Confidence             566788999999999986543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.83  E-value=0.063  Score=43.85  Aligned_cols=101  Identities=6%  Similarity=-0.011  Sum_probs=62.0

Q ss_pred             CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEE------EEEEe--cCCCcEEEEEeCCCCEEEEEeCCCcEEEEEccc
Q 043707          236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC------LESIN--AHDDAINSVVAGFDSLVFTGSADGTVKVWRREL  307 (347)
Q Consensus       236 ~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~------~~~~~--~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~  307 (347)
                      ..+..++|+|++.+.++  .+|.++-.+..+.+.      -..+-  +.. ...++.|.+++.|.++ .||.|.-++..+
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav-~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV-SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE-ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe-CCCEEEEeCCCc
Confidence            47789999998886666  577766666544111      11111  111 2578899999977777 679888776543


Q ss_pred             CCccceeeehhhhhc---cCCcEEEEEEccCCCEEEEe
Q 043707          308 QGKGTKHFLAQVLLK---QENAITALAVNQESAVVYCG  342 (347)
Q Consensus       308 ~~~~~~~~~~~~~~~---h~~~V~~l~~~p~~~~l~sg  342 (347)
                      .+.  ...+-..-..   --..+..|.|.|+|.+-+..
T Consensus       117 ~~~--~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A          117 SDT--DNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             STT--CCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred             CCC--CceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence            322  1111110111   12468999999999877766

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.77  E-value=0.42  Score=44.19  Aligned_cols=141  Identities=7%  Similarity=0.016  Sum_probs=80.3

Q ss_pred             EEEEecCCCcEEEEeCCC-cceeeecC----CCCeeEEEE-------eCCCCEEEEEeCCC-c------EEEEecCC-CC
Q 043707          135 LLYTGSDSKNIRVWKNLK-EFSGFKSN----SGLVKAIII-------TGDSNKIFTGHQDG-K------IRIWKVSR-KN  194 (347)
Q Consensus       135 ~l~tg~~dg~I~vwd~~~-~~~~~~~h----~~~V~~l~~-------sp~~~~l~s~~~Dg-~------I~vwd~~~-~~  194 (347)
                      ++++-...+.|++.|..+ .+..+..-    -.....|+|       +++++.|+.+...+ .      |.+.+... +.
T Consensus       154 Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~  233 (496)
T 3kya_A          154 LYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGT  233 (496)
T ss_dssp             EEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSC
T ss_pred             EEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCc
Confidence            444444446788888654 34443322    125889999       99998666666544 2      44554322 11


Q ss_pred             Cce-e--eeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCC-----
Q 043707          195 PSV-H--KRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRIS-----  265 (347)
Q Consensus       195 ~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwdl~-----  265 (347)
                      ... .  ..+                            .   -......++++|+ +.++++-..++.|..+|+.     
T Consensus       234 ~~~~~~~~~v----------------------------~---~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~  282 (496)
T 3kya_A          234 FDDRSDIQLI----------------------------A---AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKT  282 (496)
T ss_dssp             CSTTSCEEEE----------------------------E---EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHH
T ss_pred             eeecccceee----------------------------c---cCCCceEEEEcCCCCeEEEEECCCCEEEEEeccccccc
Confidence            100 0  000                            0   0113346788995 5555556667889999987     


Q ss_pred             --CCEE-----------EEE-Eec-CCCcEEEEEeCCCC-EEE-EEeCCCcEEEEEcc
Q 043707          266 --DCKC-----------LES-INA-HDDAINSVVAGFDS-LVF-TGSADGTVKVWRRE  306 (347)
Q Consensus       266 --~~~~-----------~~~-~~~-h~~~v~~i~~~~~~-~l~-s~~~dg~I~vwd~~  306 (347)
                        ++..           ... +.. .......|+|+|++ .|+ +-.....|+.++..
T Consensus       283 ~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          283 IKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             HHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence              4443           122 221 23446789999998 444 44567788887654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.74  E-value=0.91  Score=41.53  Aligned_cols=33  Identities=18%  Similarity=0.128  Sum_probs=22.8

Q ss_pred             CCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 043707          162 GLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKN  194 (347)
Q Consensus       162 ~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~  194 (347)
                      ...+.|+|.|+|+++++-...+.|++++..++.
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~   59 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGS   59 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCc
Confidence            356799999999766665444578888765443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.59  E-value=0.37  Score=44.55  Aligned_cols=150  Identities=9%  Similarity=0.033  Sum_probs=83.6

Q ss_pred             CeeEEEEeC-CCCEEEEEeC-CCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeE
Q 043707          163 LVKAIIITG-DSNKIFTGHQ-DGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSC  240 (347)
Q Consensus       163 ~V~~l~~sp-~~~~l~s~~~-Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  240 (347)
                      ....|+|.| +...|+.+.. .+.|++.|+..+..........                             ........
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~-----------------------------~~~~~p~~  190 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINT-----------------------------IPTNRIRS  190 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTT-----------------------------SSCSBEEE
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCc-----------------------------cccCCCcE
Confidence            356899998 3555555554 3668888877664322111100                             02235788


Q ss_pred             EEE-------cCCCCEEEEEeCCC-c------EEEEeCCC-CEEE-----EEEecCCCcEEEEEeCCC-C-EEEEEeCCC
Q 043707          241 LSL-------NAEQGLLYSGSWDK-T------LKVWRISD-CKCL-----ESINAHDDAINSVVAGFD-S-LVFTGSADG  298 (347)
Q Consensus       241 l~~-------~~~~~~l~s~s~dg-~------i~vwdl~~-~~~~-----~~~~~h~~~v~~i~~~~~-~-~l~s~~~dg  298 (347)
                      |+|       ++++..|+.+...+ .      +.+++... ++..     ..+.... ....++.+|+ + ++++-..++
T Consensus       191 ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g  269 (496)
T 3kya_A          191 IAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKG  269 (496)
T ss_dssp             EEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTT
T ss_pred             EEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCC
Confidence            999       99999777776654 2      56665332 1111     1222112 2346678884 5 555666788


Q ss_pred             cEEEEEcc-------cCCccce--------eeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          299 TVKVWRRE-------LQGKGTK--------HFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       299 ~I~vwd~~-------~~~~~~~--------~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                      .|..+|+.       .......        ...+... ........|+|+|++++|+.+-
T Consensus       270 ~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD  328 (496)
T 3kya_A          270 QVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGV  328 (496)
T ss_dssp             EEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEE
T ss_pred             EEEEEecccccccccCceeecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEe
Confidence            89999987       2221000        0000111 1234568999999999665553

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.58  E-value=1.1  Score=39.46  Aligned_cols=105  Identities=9%  Similarity=0.091  Sum_probs=58.9

Q ss_pred             CCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEE
Q 043707          162 GLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCL  241 (347)
Q Consensus       162 ~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  241 (347)
                      ...+.|+|.|+|+++++--..|.|++++...++......+   +.                       +..........|
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~---~~-----------------------v~~~g~~GllGi   85 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEV---PG-----------------------VSPSGEGGLLGI   85 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC---TT-----------------------CCCBTTBSEEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeeccc---Cc-----------------------eeecCCCCceee
Confidence            3467999999998766665589999887655432111111   00                       001234567889


Q ss_pred             EEcCC---CCEEEEE-e--CCCcEEEEeCCC----------CEEEE-EEe-cCCCcEEEEEeCCCCEEE
Q 043707          242 SLNAE---QGLLYSG-S--WDKTLKVWRISD----------CKCLE-SIN-AHDDAINSVVAGFDSLVF  292 (347)
Q Consensus       242 ~~~~~---~~~l~s~-s--~dg~i~vwdl~~----------~~~~~-~~~-~h~~~v~~i~~~~~~~l~  292 (347)
                      +++|+   ...|+.. +  .++.|.-|.+..          .+.+. .+. .....-..|+|.||+.|+
T Consensus        86 a~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Ly  154 (347)
T 3das_A           86 ALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLY  154 (347)
T ss_dssp             EECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEE
T ss_pred             EeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEE
Confidence            99995   3445443 2  345566665543          12222 232 112234678999999443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.51  E-value=1.2  Score=42.44  Aligned_cols=165  Identities=8%  Similarity=-0.009  Sum_probs=90.9

Q ss_pred             CCcEEEEeCCCc---ceeeecCCCCeeEEEEeCCCCEEEEEe-CCCcEEEEecCCCCCceeeeecccccccceEEeccCC
Q 043707          142 SKNIRVWKNLKE---FSGFKSNSGLVKAIIITGDSNKIFTGH-QDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNP  217 (347)
Q Consensus       142 dg~I~vwd~~~~---~~~~~~h~~~V~~l~~sp~~~~l~s~~-~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (347)
                      ...|+..++...   .......-..+.+|+|++.+..|+.+. ..+.|..++++....... .+.               
T Consensus        17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~-v~~---------------   80 (619)
T 3s94_A           17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN-VVV---------------   80 (619)
T ss_dssp             SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE-EEC---------------
T ss_pred             cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE-EEe---------------
Confidence            456777775432   222223334578999999665665554 457788888765421110 000               


Q ss_pred             CeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEE-eCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCC-CEEEEEe
Q 043707          218 KNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSG-SWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGS  295 (347)
Q Consensus       218 ~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~-~~l~s~~  295 (347)
                                     ........|++.+.++.|+.+ ...+.|.+.++........+...-.....|++.|. +.|+...
T Consensus        81 ---------------~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD  145 (619)
T 3s94_A           81 ---------------SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTD  145 (619)
T ss_dssp             ---------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEE
T ss_pred             ---------------CCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEec
Confidence                           122457789999865555554 45788999998654322222233445678899885 5555544


Q ss_pred             C--CCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          296 A--DGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       296 ~--dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                      .  .+.|...++.....  . .+.   ...-.....|+++++++.|+.+-
T Consensus       146 ~g~~~~I~r~~~dG~~~--~-~l~---~~~~~~P~Glald~~~~~LY~aD  189 (619)
T 3s94_A          146 WGEVPKIERAGMDGSSR--F-III---NSEIYWPNGLTLDYEEQKLYWAD  189 (619)
T ss_dssp             CSSSCEEEEEETTSCSC--E-EEE---CSSCSSEEEEEEETTTTEEEEEE
T ss_pred             cCCCCEEEEEECCCCce--E-EEE---eCCCCCCcEEEEEccCCEEEEEe
Confidence            3  45666666542111  1 111   11234678999999877776653

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.47  E-value=0.36  Score=42.57  Aligned_cols=106  Identities=8%  Similarity=0.096  Sum_probs=61.7

Q ss_pred             CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEE--EEEEe---cCCCcEEEEEeCCC----CEEEEEeC-C-----Cc
Q 043707          235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC--LESIN---AHDDAINSVVAGFD----SLVFTGSA-D-----GT  299 (347)
Q Consensus       235 ~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~--~~~~~---~h~~~v~~i~~~~~----~~l~s~~~-d-----g~  299 (347)
                      -.....|+|.|++++++ +..+|.|++++  +++.  +..+.   ........|+++|+    +.|+.+.. .     +.
T Consensus        30 l~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CSCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CCCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            34567899999998555 45679999998  4442  22222   12356789999998    55554433 2     56


Q ss_pred             EEEEEcccCCccceeeehhhhh---ccCCcEEEEEEccCCCEEEEec
Q 043707          300 VKVWRRELQGKGTKHFLAQVLL---KQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       300 I~vwd~~~~~~~~~~~~~~~~~---~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                      |..|+...........+...+.   ........|+|.|+|.+.++.+
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            7777765221101111222122   1112336899999997666644

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=95.36  E-value=0.054  Score=52.71  Aligned_cols=165  Identities=13%  Similarity=0.071  Sum_probs=87.3

Q ss_pred             CCcEEEEeCCCc-ceeeecCCCCeeEEEEeCCCCEEEEEe-CCCcEEEEecCCCCC--ceeeeecccccccceEEeccCC
Q 043707          142 SKNIRVWKNLKE-FSGFKSNSGLVKAIIITGDSNKIFTGH-QDGKIRIWKVSRKNP--SVHKRVGSLPTFKDYVKSSVNP  217 (347)
Q Consensus       142 dg~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s~~-~Dg~I~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  217 (347)
                      .+.|++.+.... ...+......+.+|+|.+.+..|+.+. ..+.|+.+++.....  .....+.               
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~---------------  449 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS---------------  449 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC---------------
T ss_pred             ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe---------------
Confidence            356777765432 222222234577899998666666554 557888888875210  0000000               


Q ss_pred             CeEEEEeecceeeeeecCCCeeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCC-CEEEEEe
Q 043707          218 KNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ-GLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGS  295 (347)
Q Consensus       218 ~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~-~~l~s~~  295 (347)
                                     ........|++.+.+ +++++-...+.|.++++........+.........|++.|. ++|+.+.
T Consensus       450 ---------------~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td  514 (699)
T 1n7d_A          450 ---------------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTD  514 (699)
T ss_dssp             ---------------SCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECC
T ss_pred             ---------------CCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcc
Confidence                           011234457787544 44444455788999998755433333322344677888885 4444443


Q ss_pred             C--CCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEe
Q 043707          296 A--DGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCG  342 (347)
Q Consensus       296 ~--dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sg  342 (347)
                      .  .+.|.++++.....  . .+.   .........|+|+|+++.|+.+
T Consensus       515 ~~~~~~I~~~~~dG~~~--~-~l~---~~~l~~PnGlavd~~~~~LY~a  557 (699)
T 1n7d_A          515 WGTPAKIKKGGLNGVDI--Y-SLV---TENIQWPNGITLDLLSGRLYWV  557 (699)
T ss_dssp             CSSSCCEEBCCSSSCCC--C-EES---CSSCSSCCCEEECTTTCCEEEE
T ss_pred             cCCCCeEEEEeCCCCCe--e-EEE---eCCCCCccEEEEeccCCEEEEE
Confidence            2  36777777652211  0 111   1122356788999876655544

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.32  E-value=2.1  Score=40.92  Aligned_cols=164  Identities=9%  Similarity=0.015  Sum_probs=95.2

Q ss_pred             CCCcEEEEeCCCc-cee-ee-cCCCCeeEEEEeCCCCEEE-EEeCCCcEEEEecCCCCCceeeeecccccccceEEeccC
Q 043707          141 DSKNIRVWKNLKE-FSG-FK-SNSGLVKAIIITGDSNKIF-TGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVN  216 (347)
Q Consensus       141 ~dg~I~vwd~~~~-~~~-~~-~h~~~V~~l~~sp~~~~l~-s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (347)
                      ....|+..++... ... +. ..-..+.+|+|.+.+..|+ +-..++.|+.++++.........                
T Consensus        13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~----------------   76 (628)
T 4a0p_A           13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVE----------------   76 (628)
T ss_dssp             ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC----------------
T ss_pred             eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEe----------------
Confidence            3456777775432 111 11 1224678999999655555 44567888888887543211110                


Q ss_pred             CCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEE-eCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCC-CEEEEE
Q 043707          217 PKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSG-SWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTG  294 (347)
Q Consensus       217 ~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~-~~l~s~  294 (347)
                                      ........|++.+.+..|+.+ ...+.|.+.++........+...-.....|++.|. +.|+..
T Consensus        77 ----------------~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~t  140 (628)
T 4a0p_A           77 ----------------FGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWT  140 (628)
T ss_dssp             ----------------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEE
T ss_pred             ----------------CCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEe
Confidence                            012345678888765555444 45678999998644322222233445789999984 665555


Q ss_pred             e--CCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          295 S--ADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       295 ~--~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                      .  ..+.|...++.....       ..+.........|+++++++.|+.+-
T Consensus       141 D~g~~~~I~r~~~dG~~~-------~~l~~~~~~P~GlalD~~~~~LY~aD  184 (628)
T 4a0p_A          141 EWGGKPKIDRAAMDGSER-------TTLVPNVGRANGLTIDYAKRRLYWTD  184 (628)
T ss_dssp             ECSSSCEEEEEETTSCSC-------EEEECSCSSEEEEEEETTTTEEEEEE
T ss_pred             CCCCCCEEEEEeCCCCce-------EEEECCCCCcceEEEccccCEEEEEE
Confidence            4  356777777652221       11112345678999999877776654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=95.29  E-value=0.094  Score=51.03  Aligned_cols=141  Identities=11%  Similarity=0.119  Sum_probs=78.1

Q ss_pred             CCEEEEe-cCCCcEEEEeCCC-----cceee-ecCCCCeeEEEEeCC-CCEEEEEeCCCcEEEEecCCCCCceeeeeccc
Q 043707          133 GDLLYTG-SDSKNIRVWKNLK-----EFSGF-KSNSGLVKAIIITGD-SNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSL  204 (347)
Q Consensus       133 ~~~l~tg-~~dg~I~vwd~~~-----~~~~~-~~h~~~V~~l~~sp~-~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~  204 (347)
                      +..|+.. ...+.|+.++...     ....+ ...-.....|++.+. ++++++-...+.|.+.++..........    
T Consensus       417 ~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~----  492 (699)
T 1n7d_A          417 SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR----  492 (699)
T ss_dssp             TTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECC----
T ss_pred             cCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEe----
Confidence            4445444 4557888887543     11111 111224567888764 4444454566788888876543111100    


Q ss_pred             ccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCC--CcEEEEeCCCCEEEEEE-ecCCCcEE
Q 043707          205 PTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWD--KTLKVWRISDCKCLESI-NAHDDAIN  281 (347)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d--g~i~vwdl~~~~~~~~~-~~h~~~v~  281 (347)
                                                  ........|+++|.+..|+.....  +.|.++++... ....+ ...-...+
T Consensus       493 ----------------------------~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~l~~Pn  543 (699)
T 1n7d_A          493 ----------------------------EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPN  543 (699)
T ss_dssp             ----------------------------CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSSCSSCC
T ss_pred             ----------------------------CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCCCCCcc
Confidence                                        012334678888876656555432  67877777532 22222 22233467


Q ss_pred             EEEeCCCC--EEEEEeCCCcEEEEEcc
Q 043707          282 SVVAGFDS--LVFTGSADGTVKVWRRE  306 (347)
Q Consensus       282 ~i~~~~~~--~l~s~~~dg~I~vwd~~  306 (347)
                      .|++++++  ++++-...+.|.++++.
T Consensus       544 Glavd~~~~~LY~aD~~~~~I~~~d~d  570 (699)
T 1n7d_A          544 GITLDLLSGRLYWVDSKLHSISSIDVN  570 (699)
T ss_dssp             CEEECTTTCCEEEEETTTTEEEEECSS
T ss_pred             EEEEeccCCEEEEEecCCCeEEEEccC
Confidence            88999864  44555567889999886

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.29  E-value=0.58  Score=41.27  Aligned_cols=147  Identities=14%  Similarity=0.134  Sum_probs=76.5

Q ss_pred             CeeEEEEeCCCCEEEEEe------------CCCcEEEEecCCCCCcee-eeeccc-ccccceEEeccCCCeEEEEeecce
Q 043707          163 LVKAIIITGDSNKIFTGH------------QDGKIRIWKVSRKNPSVH-KRVGSL-PTFKDYVKSSVNPKNYVEVRRNRN  228 (347)
Q Consensus       163 ~V~~l~~sp~~~~l~s~~------------~Dg~I~vwd~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  228 (347)
                      ...+|++.|+|..+++++            .+|.|.++|.++...... ..+... ..                      
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~----------------------  108 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLD----------------------  108 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCC----------------------
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCC----------------------
Confidence            456778888875544442            689999999875322111 111000 00                      


Q ss_pred             eeeeecCCCeeEEEEcC--CCC-EEEEE-eC--CCcEEEEeCCCC----EEEEEEecC-CCcEEEEEeCCCCEEEEEeC-
Q 043707          229 VLKIRHYDAVSCLSLNA--EQG-LLYSG-SW--DKTLKVWRISDC----KCLESINAH-DDAINSVVAGFDSLVFTGSA-  296 (347)
Q Consensus       229 ~~~~~h~~~V~~l~~~~--~~~-~l~s~-s~--dg~i~vwdl~~~----~~~~~~~~h-~~~v~~i~~~~~~~l~s~~~-  296 (347)
                          ........|.+.+  ++. +|+.+ ..  +.+|.+|++...    ..+..+.+. -...+.+.+.++|.++.+.. 
T Consensus       109 ----~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~  184 (355)
T 3sre_A          109 ----ISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDH  184 (355)
T ss_dssp             ----GGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESC
T ss_pred             ----cCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCc
Confidence                0122344455544  333 34333 22  467778776542    223344322 24578899988885544432 


Q ss_pred             -----------------CCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707          297 -----------------DGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       297 -----------------dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                                       .|.|.-+|..   +      ...+...-...+.|+|+||++.|+.+..
T Consensus       185 ~ftd~~~~~~e~~~~~~~g~vyr~d~~---~------~~~~~~~l~~pNGia~spDg~~lYvadt  240 (355)
T 3sre_A          185 YFIDPYLKSWEMHLGLAWSFVTYYSPN---D------VRVVAEGFDFANGINISPDGKYVYIAEL  240 (355)
T ss_dssp             SCSSHHHHHHHHHTTCCCEEEEEECTT---C------CEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred             EeCCcccccchhhccCCccEEEEEECC---e------EEEeecCCcccCcceECCCCCEEEEEeC
Confidence                             1334333331   1      1122222345789999999998887653

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.73  E-value=1.1  Score=39.43  Aligned_cols=111  Identities=10%  Similarity=0.052  Sum_probs=66.4

Q ss_pred             cCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEE--EEEE----ecCCCcEEEEEeCCC----CEEEEE---eCCCcE
Q 043707          234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC--LESI----NAHDDAINSVVAGFD----SLVFTG---SADGTV  300 (347)
Q Consensus       234 h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~--~~~~----~~h~~~v~~i~~~~~----~~l~s~---~~dg~I  300 (347)
                      .-...+.|+|.|++.++++--..|.|++++...++.  +..+    .........|+++|+    +.|+..   ..++.|
T Consensus        30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v  109 (347)
T 3das_A           30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI  109 (347)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred             CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence            455678999999999777765589999998765543  2222    123556889999995    544432   345556


Q ss_pred             EEEEcccCC----c-cceeeehhhhh-ccCCcEEEEEEccCCCEEEEecC
Q 043707          301 KVWRRELQG----K-GTKHFLAQVLL-KQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       301 ~vwd~~~~~----~-~~~~~~~~~~~-~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      .-|.+....    . .....++..+. .....-..|+|.|||.+.++.+.
T Consensus       110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd  159 (347)
T 3das_A          110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGE  159 (347)
T ss_dssp             EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBC
T ss_pred             EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECC
Confidence            556554311    1 01111111121 11223467999999987777654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=94.60  E-value=2.2  Score=37.45  Aligned_cols=137  Identities=11%  Similarity=0.251  Sum_probs=87.0

Q ss_pred             CCcEEEEeCC---Ccceeeec------CC-CCeeEEEE--eCC-CC-EEEEEeCCCcEEEEecCCCCC--ceeeeecccc
Q 043707          142 SKNIRVWKNL---KEFSGFKS------NS-GLVKAIII--TGD-SN-KIFTGHQDGKIRIWKVSRKNP--SVHKRVGSLP  205 (347)
Q Consensus       142 dg~I~vwd~~---~~~~~~~~------h~-~~V~~l~~--sp~-~~-~l~s~~~Dg~I~vwd~~~~~~--~~~~~~~~~~  205 (347)
                      +.+|.+|++.   ..+..+..      .. ..+..+++  +|. +. +++....+|.+..|++.....  ...+.+.   
T Consensus        98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR---  174 (355)
T 3amr_A           98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVR---  174 (355)
T ss_dssp             CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEE---
T ss_pred             CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEE---
Confidence            5789999642   23333311      11 56777888  774 43 688888999999999854211  1111111   


Q ss_pred             cccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC-----CCEEEEEEe-cC-CC
Q 043707          206 TFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS-----DCKCLESIN-AH-DD  278 (347)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~-----~~~~~~~~~-~h-~~  278 (347)
                                               .+.-...+..+...+....|+.+-++..|..++.+     +++.+..+. .+ ..
T Consensus       175 -------------------------~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~a  229 (355)
T 3amr_A          175 -------------------------AFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTR  229 (355)
T ss_dssp             -------------------------EEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCS
T ss_pred             -------------------------EecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCcccc
Confidence                                     11234567888899988999999999776666754     355665553 22 23


Q ss_pred             cEEEEEe--CCC--CEEEEEe-CCCcEEEEEcc
Q 043707          279 AINSVVA--GFD--SLVFTGS-ADGTVKVWRRE  306 (347)
Q Consensus       279 ~v~~i~~--~~~--~~l~s~~-~dg~I~vwd~~  306 (347)
                      .+..|++  .++  ++|++++ .++++.|||++
T Consensus       230 DvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          230 DIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             CEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             CcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            5777766  443  3566555 67899999996

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=94.46  E-value=4.3  Score=41.83  Aligned_cols=73  Identities=16%  Similarity=0.277  Sum_probs=51.0

Q ss_pred             cCCCeeEEEEcCC------CCEEEEEeC-CCcEEEEeCCCCEEEEEEecC-CCcEEEEEeCC-CC--EEEEEeCCCcEEE
Q 043707          234 HYDAVSCLSLNAE------QGLLYSGSW-DKTLKVWRISDCKCLESINAH-DDAINSVVAGF-DS--LVFTGSADGTVKV  302 (347)
Q Consensus       234 h~~~V~~l~~~~~------~~~l~s~s~-dg~i~vwdl~~~~~~~~~~~h-~~~v~~i~~~~-~~--~l~s~~~dg~I~v  302 (347)
                      -...|.|+++.+.      +.+++.|.+ |++++|+++.+.+.+....-. .....++.+.. ++  +|..|-.||.+.-
T Consensus       552 l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~  631 (1158)
T 3ei3_A          552 MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFY  631 (1158)
T ss_dssp             CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEE
T ss_pred             CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEE
Confidence            3567999998763      479999998 999999999987776544321 12334443321 23  8889999999877


Q ss_pred             EEcc
Q 043707          303 WRRE  306 (347)
Q Consensus       303 wd~~  306 (347)
                      +.+.
T Consensus       632 ~~~d  635 (1158)
T 3ei3_A          632 FGLN  635 (1158)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            7654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.43  E-value=1.5  Score=40.17  Aligned_cols=110  Identities=5%  Similarity=0.052  Sum_probs=63.6

Q ss_pred             CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEE--EEEEec------CCCcEEEEEeCC----CCEEEEEeC------
Q 043707          235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC--LESINA------HDDAINSVVAGF----DSLVFTGSA------  296 (347)
Q Consensus       235 ~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~--~~~~~~------h~~~v~~i~~~~----~~~l~s~~~------  296 (347)
                      -...+.|+|.|+++++++-...+.|++++..+++.  +..+..      .+..+..|+++|    ++.|+.+..      
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            44667999999998777655445798888765543  233321      245677999999    454444332      


Q ss_pred             -------CCcEEEEEcccCCc--cceeeehhhhh-ccCCcEEEEEEccCCCEEEEecC
Q 043707          297 -------DGTVKVWRRELQGK--GTKHFLAQVLL-KQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       297 -------dg~I~vwd~~~~~~--~~~~~~~~~~~-~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                             ...|.-|+......  .....++..+. ........|+|.|||.+.++.+.
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                   23455555432111  01111221121 11235789999999987777654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=94.41  E-value=3.6  Score=39.21  Aligned_cols=149  Identities=11%  Similarity=0.137  Sum_probs=86.0

Q ss_pred             EEEEeec--CCEEE-EecCCCcEEEEeCCCc--ce-eeecCCCCeeEEEEeCCCCEE-EEEeCCCcEEEEecCCCCCcee
Q 043707          126 IYSLAAS--GDLLY-TGSDSKNIRVWKNLKE--FS-GFKSNSGLVKAIIITGDSNKI-FTGHQDGKIRIWKVSRKNPSVH  198 (347)
Q Consensus       126 V~~l~~~--~~~l~-tg~~dg~I~vwd~~~~--~~-~~~~h~~~V~~l~~sp~~~~l-~s~~~Dg~I~vwd~~~~~~~~~  198 (347)
                      ..+++++  ++.|+ +-...+.|+.++....  .. .+..--.....|++.+.+..| ++-...+.|.+.+++.......
T Consensus        42 ~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l  121 (619)
T 3s94_A           42 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL  121 (619)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             eEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEE
Confidence            3455443  44444 4445677888775432  12 222222568899999955544 4455678899999876532111


Q ss_pred             eeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCC--CcEEEEeCCCCEEEEEEecC
Q 043707          199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWD--KTLKVWRISDCKCLESINAH  276 (347)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d--g~i~vwdl~~~~~~~~~~~h  276 (347)
                      ..                                ........|+++|.+..|+...+.  +.|...++............
T Consensus       122 ~~--------------------------------~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~  169 (619)
T 3s94_A          122 FW--------------------------------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE  169 (619)
T ss_dssp             EC--------------------------------SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS
T ss_pred             Ee--------------------------------CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCC
Confidence            10                                123446679999987777766653  56666666432222222233


Q ss_pred             CCcEEEEEeCCC-CEEE-EEeCCCcEEEEEcc
Q 043707          277 DDAINSVVAGFD-SLVF-TGSADGTVKVWRRE  306 (347)
Q Consensus       277 ~~~v~~i~~~~~-~~l~-s~~~dg~I~vwd~~  306 (347)
                      -...+.|++.++ +.|+ +=...+.|..+|+.
T Consensus       170 ~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d  201 (619)
T 3s94_A          170 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD  201 (619)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTCCEEEESSS
T ss_pred             CCCCcEEEEEccCCEEEEEeCCCCeEEEecCC
Confidence            456788999875 4444 44556788888886

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=94.23  E-value=2.2  Score=36.14  Aligned_cols=83  Identities=14%  Similarity=0.147  Sum_probs=39.9

Q ss_pred             CcEEEEeCCCCEEEE--EEecCCCcEEEEEeCCCCEEEEEeCC-----CcEEEEEcccCCccceeeehhhhhccCCcEEE
Q 043707          257 KTLKVWRISDCKCLE--SINAHDDAINSVVAGFDSLVFTGSAD-----GTVKVWRRELQGKGTKHFLAQVLLKQENAITA  329 (347)
Q Consensus       257 g~i~vwdl~~~~~~~--~~~~h~~~v~~i~~~~~~~l~s~~~d-----g~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~  329 (347)
                      ..+.+||+.+.+-..  .+......-..+.+ .+.+++.|+.+     ..+.+||+...    ....+..+.........
T Consensus       169 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~----~W~~~~~~p~~r~~~~~  243 (306)
T 3ii7_A          169 NSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLN----EWKMVSPMPWKGVTVKC  243 (306)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTT----EEEECCCCSCCBSCCEE
T ss_pred             ceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCC----cEEECCCCCCCccceeE
Confidence            458899988764322  12111111122222 33356666543     46788888643    22222222222222233


Q ss_pred             EEEccCCCEEEEecCCC
Q 043707          330 LAVNQESAVVYCGSSDG  346 (347)
Q Consensus       330 l~~~p~~~~l~sgs~DG  346 (347)
                      +.+  ++++++.|+.++
T Consensus       244 ~~~--~~~i~v~GG~~~  258 (306)
T 3ii7_A          244 AAV--GSIVYVLAGFQG  258 (306)
T ss_dssp             EEE--TTEEEEEECBCS
T ss_pred             EEE--CCEEEEEeCcCC
Confidence            333  667888887654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=93.89  E-value=2.6  Score=35.60  Aligned_cols=94  Identities=10%  Similarity=0.155  Sum_probs=46.1

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCEEEEE--EecCCCcEEEEEeCCCCEEEEEeCC-----CcEEEEEcccCCccce
Q 043707          246 EQGLLYSGSWD-----KTLKVWRISDCKCLES--INAHDDAINSVVAGFDSLVFTGSAD-----GTVKVWRRELQGKGTK  313 (347)
Q Consensus       246 ~~~~l~s~s~d-----g~i~vwdl~~~~~~~~--~~~h~~~v~~i~~~~~~~l~s~~~d-----g~I~vwd~~~~~~~~~  313 (347)
                      ++.+++.|+.+     ..+.+||+.+.+-...  +.........+.+ .+.+++.|+.+     ..|.+||+....    
T Consensus       159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~----  233 (301)
T 2vpj_A          159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL-NDHIYVVGGFDGTAHLSSVEAYNIRTDS----  233 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTE----
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE-CCEEEEEeCCCCCcccceEEEEeCCCCc----
Confidence            45666666543     4588999877643222  2111111222233 23366666654     468889886432    


Q ss_pred             eeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          314 HFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       314 ~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      ...+..+.........+.+  ++++++.|+.++
T Consensus       234 W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~  264 (301)
T 2vpj_A          234 WTTVTSMTTPRCYVGATVL--RGRLYAIAGYDG  264 (301)
T ss_dssp             EEEECCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred             EEECCCCCCcccceeEEEE--CCEEEEEcCcCC
Confidence            2222222211112222222  567777777654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=93.28  E-value=3.3  Score=34.96  Aligned_cols=94  Identities=16%  Similarity=0.168  Sum_probs=44.6

Q ss_pred             CCCEEEEEeCC-------CcEEEEeCCCCEEEE--EEecCCCcEEEEEeCCCCEEEEEeCC-----CcEEEEEcccCCcc
Q 043707          246 EQGLLYSGSWD-------KTLKVWRISDCKCLE--SINAHDDAINSVVAGFDSLVFTGSAD-----GTVKVWRRELQGKG  311 (347)
Q Consensus       246 ~~~~l~s~s~d-------g~i~vwdl~~~~~~~--~~~~h~~~v~~i~~~~~~~l~s~~~d-----g~I~vwd~~~~~~~  311 (347)
                      ++.+++.|+.+       ..+.+||+.+.+-..  .+.........+.+ .+.+++.|+.+     ..+.+||+....  
T Consensus       155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~--  231 (302)
T 2xn4_A          155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNA--  231 (302)
T ss_dssp             TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTE--
T ss_pred             CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCC--
Confidence            44555555432       358899988764322  22211111222232 33466666654     468888886431  


Q ss_pred             ceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          312 TKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       312 ~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                        ...+..+.........+.+  ++++++.|+.++
T Consensus       232 --W~~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~  262 (302)
T 2xn4_A          232 --WRQVADMNMCRRNAGVCAV--NGLLYVVGGDDG  262 (302)
T ss_dssp             --EEEECCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred             --EeeCCCCCCccccCeEEEE--CCEEEEECCcCC
Confidence              2222222111111112222  567778887654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=92.97  E-value=3.8  Score=34.79  Aligned_cols=94  Identities=14%  Similarity=0.208  Sum_probs=45.8

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCEEEE--EEecCCCcEEEEEeCCCCEEEEEeCC-----CcEEEEEcccCCccce
Q 043707          246 EQGLLYSGSWD-----KTLKVWRISDCKCLE--SINAHDDAINSVVAGFDSLVFTGSAD-----GTVKVWRRELQGKGTK  313 (347)
Q Consensus       246 ~~~~l~s~s~d-----g~i~vwdl~~~~~~~--~~~~h~~~v~~i~~~~~~~l~s~~~d-----g~I~vwd~~~~~~~~~  313 (347)
                      ++.+++.|+.+     ..+.+||+.+.+-..  .+......-..+.+ .+.+++.|+.+     ..+.+||+...    .
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~----~  242 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETE----T  242 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTT----E
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCC----c
Confidence            45566666543     458899987764321  12111111222333 33366666654     56888988643    2


Q ss_pred             eeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          314 HFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       314 ~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      ...+..+.........+.+  ++++++.|+.++
T Consensus       243 W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~  273 (308)
T 1zgk_A          243 WTFVAPMKHRRSALGITVH--QGRIYVLGGYDG  273 (308)
T ss_dssp             EEECCCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred             EEECCCCCCCccceEEEEE--CCEEEEEcCcCC
Confidence            2222222211112222222  567777777654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=92.95  E-value=3.7  Score=34.60  Aligned_cols=94  Identities=14%  Similarity=0.190  Sum_probs=44.7

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCEE--EEEEecCCCcEEEEEeCCCCEEEEEeCC-----CcEEEEEcccCCccce
Q 043707          246 EQGLLYSGSWD-----KTLKVWRISDCKC--LESINAHDDAINSVVAGFDSLVFTGSAD-----GTVKVWRRELQGKGTK  313 (347)
Q Consensus       246 ~~~~l~s~s~d-----g~i~vwdl~~~~~--~~~~~~h~~~v~~i~~~~~~~l~s~~~d-----g~I~vwd~~~~~~~~~  313 (347)
                      ++.+++.|+.+     ..+.+||+.+.+-  +..+......-..+.+ .+.+++.|+.+     ..+.+||+.+..    
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~----  186 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-SGVIYCLGGYDGLNILNSVEKYDPHTGH----  186 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTE----
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE-CCEEEEECCCCCCcccceEEEEeCCCCc----
Confidence            45566666543     3588899877653  3322221112222222 23355566654     468888876432    


Q ss_pred             eeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          314 HFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       314 ~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      ...+..+.........+.+  ++++++.|+.++
T Consensus       187 W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~  217 (301)
T 2vpj_A          187 WTNVTPMATKRSGAGVALL--NDHIYVVGGFDG  217 (301)
T ss_dssp             EEEECCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred             EEeCCCCCcccccceEEEE--CCEEEEEeCCCC
Confidence            1222222111111222222  567777777654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=92.01  E-value=8.7  Score=36.63  Aligned_cols=183  Identities=9%  Similarity=0.027  Sum_probs=98.4

Q ss_pred             cEEEEeec--CC-EEEEecCCCcEEEEeCCCc-ceeeec-CCCCeeEEEEeCCCCEE-EEEeCCCcEEEEecCCCCCcee
Q 043707          125 HIYSLAAS--GD-LLYTGSDSKNIRVWKNLKE-FSGFKS-NSGLVKAIIITGDSNKI-FTGHQDGKIRIWKVSRKNPSVH  198 (347)
Q Consensus       125 ~V~~l~~~--~~-~l~tg~~dg~I~vwd~~~~-~~~~~~-h~~~V~~l~~sp~~~~l-~s~~~Dg~I~vwd~~~~~~~~~  198 (347)
                      ...+++++  ++ ++++-..++.|+.++.... ...+.. -......|++.+.+..| ++-...+.|.+.+++.......
T Consensus        38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l  117 (628)
T 4a0p_A           38 EASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVL  117 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEE
T ss_pred             ceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEE
Confidence            34455554  34 4555566788888875432 222222 22457889998755554 4445567899999876542211


Q ss_pred             eeecccccccceEEeccCCCeEEEEee------------cceeeeeecCCCeeEEEEcCCCCEEEEEe-CCCcEEEEeCC
Q 043707          199 KRVGSLPTFKDYVKSSVNPKNYVEVRR------------NRNVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRIS  265 (347)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~vwdl~  265 (347)
                      . ...+.....+......+..++..+.            ...............|++++++..|+.+. ..+.|...|+.
T Consensus       118 ~-~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~d  196 (628)
T 4a0p_A          118 V-WKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNML  196 (628)
T ss_dssp             E-CSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             E-eCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCC
Confidence            1 1111111122221112222222111            11122223445678899999877666665 46789999986


Q ss_pred             CCEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCC
Q 043707          266 DCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQG  309 (347)
Q Consensus       266 ~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~  309 (347)
                      .... ..+...-.....|++..+.++++-...+.|...|..++.
T Consensus       197 G~~~-~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          197 GLNR-EVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             SCSC-EEEEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred             CCce-EEeeccCCCceEEEEECCEEEEecCCCCEEEEEECCCCC
Confidence            4332 233333334557777554455555568888888875543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=91.86  E-value=9.9  Score=36.96  Aligned_cols=182  Identities=16%  Similarity=0.207  Sum_probs=97.5

Q ss_pred             EEEEeecCCEEEEecCCCcEEEEeCCC-cceeee-----cCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceee
Q 043707          126 IYSLAASGDLLYTGSDSKNIRVWKNLK-EFSGFK-----SNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHK  199 (347)
Q Consensus       126 V~~l~~~~~~l~tg~~dg~I~vwd~~~-~~~~~~-----~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~  199 (347)
                      |.++......|..|+.+ -|..++... .+..+.     .....|.++....++...+ |..+| |..++..+++.... 
T Consensus       105 i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~-  180 (758)
T 3ott_A          105 VRTMALQGDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFEGI-  180 (758)
T ss_dssp             EEEEEEETTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEEE-
T ss_pred             EEEEEecCCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceEEe-
Confidence            55554444455556655 577787542 222221     1134688888877775544 55544 66677655431100 


Q ss_pred             eecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCc
Q 043707          200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDA  279 (347)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~  279 (347)
                      .   .+...                       ......|.++....++..|..|+. +-+..+|..+++...........
T Consensus       181 ~---~~~~~-----------------------~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~  233 (758)
T 3ott_A          181 P---LPVHS-----------------------SQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNS  233 (758)
T ss_dssp             C---CCCCT-----------------------TCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEE
T ss_pred             c---CCCcc-----------------------ccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCe
Confidence            0   00000                       001234788888777776666664 46888998776543221112345


Q ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhh---hhccCCcEEEEEEccCCCEEEE
Q 043707          280 INSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQV---LLKQENAITALAVNQESAVVYC  341 (347)
Q Consensus       280 v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~---~~~h~~~V~~l~~~p~~~~l~s  341 (347)
                      |.++....++.|..|..+ -|.+++......  .......   ..-....|.++....+|.+-+.
T Consensus       234 i~~i~~d~~g~lWigT~~-Gl~~~~~~~~~~--~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiG  295 (758)
T 3ott_A          234 IKSLALDGNGDLLAGTDN-GLYVYHNDTTPL--QHIIHDSRNIQSLTNNIIWNIFADQEHNIWLG  295 (758)
T ss_dssp             EEEEEECTTCCEEEEETT-EEEEECCTTSCC--EEECCCTTCTTSCSCSCEEEEEECTTCCEEEE
T ss_pred             EEEEEEcCCCCEEEEeCC-ceeEEecCCCcE--EEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEE
Confidence            888888878866667654 577787653221  1110000   0112346889988887765443

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=90.18  E-value=7.6  Score=39.08  Aligned_cols=39  Identities=26%  Similarity=0.382  Sum_probs=33.8

Q ss_pred             CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEe
Q 043707          236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN  274 (347)
Q Consensus       236 ~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~  274 (347)
                      ..+.+++..++..++++-+.|+++|||++.+++++.+..
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            356777788888999999999999999999999988753

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=89.63  E-value=8.6  Score=32.51  Aligned_cols=94  Identities=10%  Similarity=0.105  Sum_probs=44.2

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCEEEE--EEecCCCcEEEEEeCCCCEEEEEeCC-----CcEEEEEcccCCccce
Q 043707          246 EQGLLYSGSWD-----KTLKVWRISDCKCLE--SINAHDDAINSVVAGFDSLVFTGSAD-----GTVKVWRRELQGKGTK  313 (347)
Q Consensus       246 ~~~~l~s~s~d-----g~i~vwdl~~~~~~~--~~~~h~~~v~~i~~~~~~~l~s~~~d-----g~I~vwd~~~~~~~~~  313 (347)
                      ++.+++.|+.+     ..+.+||+.+.+-..  .+......-..+.+ .+.+++.|+.+     ..+.+||+....    
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~----  195 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNE----  195 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTE----
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCe----
Confidence            45556665532     358889987764322  22211111222233 23355566654     458888886431    


Q ss_pred             eeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          314 HFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       314 ~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      ...+..+.........+.+  ++++++.|+.++
T Consensus       196 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~  226 (308)
T 1zgk_A          196 WRMITAMNTIRSGAGVCVL--HNCIYAAGGYDG  226 (308)
T ss_dssp             EEECCCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred             EeeCCCCCCccccceEEEE--CCEEEEEeCCCC
Confidence            2222222211112222333  567777777653

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=89.45  E-value=2.1  Score=37.60  Aligned_cols=107  Identities=9%  Similarity=0.009  Sum_probs=58.8

Q ss_pred             CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEE-------ecCCCcEEEEEeCCC----CEEEEEeC--------
Q 043707          236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI-------NAHDDAINSVVAGFD----SLVFTGSA--------  296 (347)
Q Consensus       236 ~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~-------~~h~~~v~~i~~~~~----~~l~s~~~--------  296 (347)
                      .....|+|.|+++.|+++...|.|++++. +++....+       .........|+++|+    +.|+.+..        
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            45678999999983445556899999985 34432111       112345789999995    55544422        


Q ss_pred             CCcEEEEEcccCCc--cceeeehhhhh---ccCCcEEEEEEccCCCEEEEec
Q 043707          297 DGTVKVWRRELQGK--GTKHFLAQVLL---KQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       297 dg~I~vwd~~~~~~--~~~~~~~~~~~---~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                      ...|..|++.....  .....++..+.   ........|+|.|||.+.++.+
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  148 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG  148 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence            23555565542211  01111221221   1111235799999996666544

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=88.59  E-value=10  Score=31.88  Aligned_cols=61  Identities=18%  Similarity=0.228  Sum_probs=32.6

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCEEEE--EEecCCCcEEEEEeCCCCEEEEEeCCC-----cEEEEEccc
Q 043707          246 EQGLLYSGSWD-----KTLKVWRISDCKCLE--SINAHDDAINSVVAGFDSLVFTGSADG-----TVKVWRREL  307 (347)
Q Consensus       246 ~~~~l~s~s~d-----g~i~vwdl~~~~~~~--~~~~h~~~v~~i~~~~~~~l~s~~~dg-----~I~vwd~~~  307 (347)
                      ++.+++.|+.+     ..+.+||+.+.+-..  .+.........+. ..+.+++.|+.++     .|.+||+..
T Consensus       204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~  276 (302)
T 2xn4_A          204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTT  276 (302)
T ss_dssp             TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE-ECCEEEEECCcCCCcccccEEEEcCCC
Confidence            45666666653     368899998764322  1211111112222 2233666666553     488888864

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=88.58  E-value=14  Score=33.53  Aligned_cols=167  Identities=12%  Similarity=0.138  Sum_probs=99.7

Q ss_pred             ceeEeeeeccc----cEEEEe--ecCCEEEE-ec------CCCcEEEEeCCCc-ceeeecCCCCeeEEEEeCCC---CEE
Q 043707          114 GLIGSIVRKEG----HIYSLA--ASGDLLYT-GS------DSKNIRVWKNLKE-FSGFKSNSGLVKAIIITGDS---NKI  176 (347)
Q Consensus       114 ~~i~~l~~h~~----~V~~l~--~~~~~l~t-g~------~dg~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~---~~l  176 (347)
                      .+++.+..|..    .|....  .+.++++. |-      -.|.+.+|...+. .+.+.+|.+.-..+....+.   +.|
T Consensus       137 ~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf  216 (494)
T 1bpo_A          137 QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLF  216 (494)
T ss_dssp             CCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEE
T ss_pred             CchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEE
Confidence            34555555543    344444  34555443 31      2478889987655 56677776555444432211   133


Q ss_pred             EEEeCC---CcEEEEecCCC---CCceee---eecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCC
Q 043707          177 FTGHQD---GKIRIWKVSRK---NPSVHK---RVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ  247 (347)
Q Consensus       177 ~s~~~D---g~I~vwd~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~  247 (347)
                      +.+...   ++++|-++...   .....+   .+...|.                          ...+---++..++..
T Consensus       217 ~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe--------------------------~~~DFPvamqvs~ky  270 (494)
T 1bpo_A          217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE--------------------------AQNDFPVAMQISEKH  270 (494)
T ss_dssp             EEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTT--------------------------STTCCEEEEEEETTT
T ss_pred             EEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcc--------------------------cccCceeEEEecccC
Confidence            434332   78999988643   111111   1111111                          123445678899998


Q ss_pred             CEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCC-CEEEEEeCCCcEEEEEcc
Q 043707          248 GLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVWRRE  306 (347)
Q Consensus       248 ~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~-~~l~s~~~dg~I~vwd~~  306 (347)
                      ..++.-+.-|.|++||+.++.++..-+--.+.|..-+.... +=++.....|.|.--.++
T Consensus       271 gviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~  330 (494)
T 1bpo_A          271 DVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE  330 (494)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEEC
T ss_pred             CEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEc
Confidence            99999999999999999999999888766777755544433 345555588887766665

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=87.93  E-value=13  Score=32.42  Aligned_cols=64  Identities=6%  Similarity=0.012  Sum_probs=37.3

Q ss_pred             CcEEEEEeC-------CCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          278 DAINSVVAG-------FDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       278 ~~v~~i~~~-------~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                      .....+++.       .++ ++++.-..+.|...++...+....  ....+......+..|++.|||.+.++..
T Consensus       259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~--~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRK--ISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEE--EEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccc--eeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            346777773       345 455555667888887764322100  1111222245789999999998776653

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=87.76  E-value=16  Score=33.39  Aligned_cols=29  Identities=17%  Similarity=0.386  Sum_probs=23.2

Q ss_pred             CeeEEEEeCCCC-EEEEEeCCCcEEEEecC
Q 043707          163 LVKAIIITGDSN-KIFTGHQDGKIRIWKVS  191 (347)
Q Consensus       163 ~V~~l~~sp~~~-~l~s~~~Dg~I~vwd~~  191 (347)
                      .-+.|+|.|++. .|+.+...|.|++++..
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~   44 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPE   44 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence            467899999986 56677789999999754

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=87.30  E-value=17  Score=33.01  Aligned_cols=95  Identities=13%  Similarity=0.090  Sum_probs=65.7

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhh
Q 043707          241 LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVL  320 (347)
Q Consensus       241 l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~  320 (347)
                      .-.+|..+.|+.-. ..++.|+|+++...++.+.-.+ .|.--.|-.+..|+-. .+..|+-|++.....     +.+.+
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~l~lV-T~taVyHWsi~~~s~-----P~kvF  142 (494)
T 1bpo_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALV-TDNAVYHWSMEGESQ-----PVKMF  142 (494)
T ss_dssp             EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTEEEEE-CSSEEEEEESSSSCC-----CEEEE
T ss_pred             eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCCeEEEE-cCCeeEEecccCCCC-----chhhe
Confidence            44677777777665 6889999999999998887554 4666677666655544 356899999864222     22222


Q ss_pred             hcc----CCcEEEEEEccCCCEEEEec
Q 043707          321 LKQ----ENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       321 ~~h----~~~V~~l~~~p~~~~l~sgs  343 (347)
                      ..|    ...|..-..+++.++++..|
T Consensus       143 dR~~~L~~~QIInY~~d~~~kW~~l~G  169 (494)
T 1bpo_A          143 DRHSSLAGCQIINYRTDAKQKWLLLTG  169 (494)
T ss_dssp             ECCGGGTTCEEEEEEECTTSSEEEEEE
T ss_pred             ecchhcccceEEEEEECCCCCeEEEEe
Confidence            222    46788888899998877654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=86.12  E-value=7.5  Score=33.63  Aligned_cols=13  Identities=8%  Similarity=0.251  Sum_probs=9.1

Q ss_pred             cCCCEEEEecCCC
Q 043707          334 QESAVVYCGSSDG  346 (347)
Q Consensus       334 p~~~~l~sgs~DG  346 (347)
                      -++++++.||.++
T Consensus       315 ~~~~i~v~GG~~~  327 (357)
T 2uvk_A          315 WNNSLLIIGGETA  327 (357)
T ss_dssp             ETTEEEEEEEECG
T ss_pred             eCCEEEEEeeeCC
Confidence            3678888888653

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=85.83  E-value=0.83  Score=39.98  Aligned_cols=30  Identities=13%  Similarity=0.284  Sum_probs=25.4

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCEEEEEEec
Q 043707          246 EQGLLYSGSWDKTLKVWRISDCKCLESINA  275 (347)
Q Consensus       246 ~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~  275 (347)
                      .+..+++|+.+|++...|+++|+.+..+..
T Consensus       110 ~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A          110 EDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             cCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            356788999999999999999998888763

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=85.49  E-value=16  Score=31.07  Aligned_cols=61  Identities=8%  Similarity=-0.025  Sum_probs=31.6

Q ss_pred             EEcCCCCEEEEEeC-CCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEe-CC-CcEEEEEcc
Q 043707          242 SLNAEQGLLYSGSW-DKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGS-AD-GTVKVWRRE  306 (347)
Q Consensus       242 ~~~~~~~~l~s~s~-dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~-~d-g~I~vwd~~  306 (347)
                      .++++++.|+-.+. ..+|.+-++..+.....+.   +... ..+.|++ +|+-.. .+ ..|..-++.
T Consensus       151 ~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ld  215 (302)
T 3s25_A          151 TCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNIN  215 (302)
T ss_dssp             CSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSS
T ss_pred             EeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECC
Confidence            45666777665554 5778888887665443333   2222 2344655 544333 23 244444443

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=84.66  E-value=17  Score=30.67  Aligned_cols=61  Identities=7%  Similarity=0.060  Sum_probs=31.5

Q ss_pred             CCCEEEEEeC------CCcEEEEeCCCCEEE--EEEecCCCcEEEEEeCCCCEEEEEeCCC-----cEEEEEccc
Q 043707          246 EQGLLYSGSW------DKTLKVWRISDCKCL--ESINAHDDAINSVVAGFDSLVFTGSADG-----TVKVWRREL  307 (347)
Q Consensus       246 ~~~~l~s~s~------dg~i~vwdl~~~~~~--~~~~~h~~~v~~i~~~~~~~l~s~~~dg-----~I~vwd~~~  307 (347)
                      ++.+++.|+.      -..+.+||+.+.+-.  ..+......-.++.+ .+.+++.|+.++     .+.+||+.+
T Consensus       148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~  221 (315)
T 4asc_A          148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITD  221 (315)
T ss_dssp             TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEEEEECSSSEEEEEEEEETTT
T ss_pred             CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE-CCEEEEEeccCCCCccceEEEEECCC
Confidence            4456666654      245889998776422  222211111122222 334666666544     577888764

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=84.57  E-value=21  Score=32.58  Aligned_cols=110  Identities=8%  Similarity=0.031  Sum_probs=60.9

Q ss_pred             CCeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCC---EEEEEEe---c------CCCcEEEEEeCCC----CEEEEE--e-
Q 043707          236 DAVSCLSLNAEQG-LLYSGSWDKTLKVWRISDC---KCLESIN---A------HDDAINSVVAGFD----SLVFTG--S-  295 (347)
Q Consensus       236 ~~V~~l~~~~~~~-~l~s~s~dg~i~vwdl~~~---~~~~~~~---~------h~~~v~~i~~~~~----~~l~s~--~-  295 (347)
                      ...+.|+|.|++. .|+++...|.|++++....   +.+..+.   .      .+.....|+++|+    ++|+..  . 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            4567899999985 4555667899999975322   1223221   1      1456788999997    433322  1 


Q ss_pred             CC----------CcEEEEEcccCC-c----cceeeehhhh-hccCCcEEEEEEccCCCEEEEecCC
Q 043707          296 AD----------GTVKVWRRELQG-K----GTKHFLAQVL-LKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       296 ~d----------g~I~vwd~~~~~-~----~~~~~~~~~~-~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                      .+          ..|.-|.+.... .    .....++... ......-..|+|.|||.+.++.++.
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~  159 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG  159 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence            12          134445553210 0    0111122111 1112346799999999887776654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=83.16  E-value=19  Score=30.11  Aligned_cols=62  Identities=11%  Similarity=0.097  Sum_probs=31.9

Q ss_pred             CCCEEEEEeCC------CcEEEEeCCCCEEEEE--EecCCCcEEEEEeCCCCEEEEEeC---------CCcEEEEEcccC
Q 043707          246 EQGLLYSGSWD------KTLKVWRISDCKCLES--INAHDDAINSVVAGFDSLVFTGSA---------DGTVKVWRRELQ  308 (347)
Q Consensus       246 ~~~~l~s~s~d------g~i~vwdl~~~~~~~~--~~~h~~~v~~i~~~~~~~l~s~~~---------dg~I~vwd~~~~  308 (347)
                      ++.+++.|+.+      ..+.+||+.+.+-...  +......-..+.+ .+.+++.|+.         -..+.+||+...
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~  179 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATE  179 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE-CCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence            45666666654      4588999887653222  2111111122222 2335555543         345888888643

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=82.28  E-value=20  Score=36.12  Aligned_cols=38  Identities=13%  Similarity=0.119  Sum_probs=31.9

Q ss_pred             CeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeee
Q 043707          163 LVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKR  200 (347)
Q Consensus       163 ~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~  200 (347)
                      .+.+++..++..++++-+.|+++|+|++.+++......
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            57788888888899999999999999999987654443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=81.86  E-value=50  Score=33.99  Aligned_cols=70  Identities=16%  Similarity=0.026  Sum_probs=43.8

Q ss_pred             EEEEeecCCEEEEecCCCcEEEEeCCC-ccee--eecCCCCeeEEEEeCC------CCEEEEEeC-CCcEEEEecCCCCC
Q 043707          126 IYSLAASGDLLYTGSDSKNIRVWKNLK-EFSG--FKSNSGLVKAIIITGD------SNKIFTGHQ-DGKIRIWKVSRKNP  195 (347)
Q Consensus       126 V~~l~~~~~~l~tg~~dg~I~vwd~~~-~~~~--~~~h~~~V~~l~~sp~------~~~l~s~~~-Dg~I~vwd~~~~~~  195 (347)
                      |.+.+.++.+++.+. ++.+.+++... .+..  -..-...|.|+++.|.      ..+++.|.. |++|+|+.+..-+.
T Consensus       516 I~~As~n~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~  594 (1158)
T 3ei3_A          516 ISVASCNSSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFEL  594 (1158)
T ss_dssp             CCEEEECSSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCE
T ss_pred             EEEEEeCCCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCe
Confidence            333444455666664 56777775431 1111  1123467999999763      368999996 99999999986544


Q ss_pred             c
Q 043707          196 S  196 (347)
Q Consensus       196 ~  196 (347)
                      .
T Consensus       595 ~  595 (1158)
T 3ei3_A          595 L  595 (1158)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=81.25  E-value=24  Score=29.81  Aligned_cols=93  Identities=6%  Similarity=0.142  Sum_probs=43.0

Q ss_pred             CCCEEEEEeC------CCcEEEEeCCCCEEEE--EEecCCCcEEEEEeCCCCEEEEEeCC-----CcEEEEEcccCCccc
Q 043707          246 EQGLLYSGSW------DKTLKVWRISDCKCLE--SINAHDDAINSVVAGFDSLVFTGSAD-----GTVKVWRRELQGKGT  312 (347)
Q Consensus       246 ~~~~l~s~s~------dg~i~vwdl~~~~~~~--~~~~h~~~v~~i~~~~~~~l~s~~~d-----g~I~vwd~~~~~~~~  312 (347)
                      ++.+++.|+.      -..+.+||+.+.+-..  .+.........+.+ .+.+++.|+.+     ..+.+||+.+..   
T Consensus       158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~---  233 (318)
T 2woz_A          158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNK---  233 (318)
T ss_dssp             TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCC---
T ss_pred             CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCe---
Confidence            4556666653      2358899998765322  12211111122222 33455566543     346678876432   


Q ss_pred             eeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707          313 KHFLAQVLLKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       313 ~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                       ...+..+.........+.+  ++++++.||.+
T Consensus       234 -W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~  263 (318)
T 2woz_A          234 -WEVMTEFPQERSSISLVSL--AGSLYAIGGFA  263 (318)
T ss_dssp             -EEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred             -EEECCCCCCcccceEEEEE--CCEEEEECCee
Confidence             2222222211111122222  56777777764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	347
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-16
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-16
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-15
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-11
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	9e-11
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	9e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.003
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.002
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.3 bits (186), Expect = 4e-16
 Identities = 28/174 (16%), Positives = 53/174 (30%), Gaps = 33/174 (18%)

Query: 133 GDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKV 190
             L  +G+   + ++W  +       F  +   + AI    + N   TG  D   R++ +
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255

Query: 191 SRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLL 250
                 +                                        ++ +S +    LL
Sbjct: 256 RADQELMTYS------------------------------HDNIICGITSVSFSKSGRLL 285

Query: 251 YSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVW 303
            +G  D    VW          +  HD+ ++ +    D   V TGS D  +K+W
Sbjct: 286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.5 bits (145), Expect = 6e-11
 Identities = 39/245 (15%), Positives = 76/245 (31%), Gaps = 25/245 (10%)

Query: 123 EGH---IYSLAAS--GDLLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNK 175
            GH   IY++       LL + S    + +W      +       S  V         N 
Sbjct: 52  RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY 111

Query: 176 IFTGHQDGKIRIWKVSRKNPSVHK-------------RVGSLPTFKDYVKSSVNPKNYVE 222
           +  G  D    I+ +  +  +V                                   +  
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI 171

Query: 223 VRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINS 282
               +      H   V  LSL  +  L  SG+ D + K+W + +  C ++   H+  IN+
Sbjct: 172 ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINA 231

Query: 283 VVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYC 341
           +    +     TGS D T +++      +   +            IT+++ ++   ++  
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN----IICGITSVSFSKSGRLLLA 287

Query: 342 GSSDG 346
           G  D 
Sbjct: 288 GYDDF 292

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.4 bits (137), Expect = 6e-10
 Identities = 26/116 (22%), Positives = 38/116 (32%), Gaps = 9/116 (7%)

Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKV--WRISDCKCLESINAHDDAINSVVAGFDS-L 290
           H   ++ +          +GS D T ++   R        S +     I SV       L
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284

Query: 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346
           +  G  D    VW         K   A VL   +N ++ L V  +   V  GS D 
Sbjct: 285 LLAGYDDFNCNVW------DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.1 bits (136), Expect = 8e-10
 Identities = 26/146 (17%), Positives = 47/146 (32%), Gaps = 38/146 (26%)

Query: 123 EGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKEFSGFKSNSGL----VKAIIITGDSNKI 176
           E  I ++     G+   TGSD    R++    +      +       + ++  +     +
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285

Query: 177 FTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYD 236
             G+ D    +W   +       R G L                             H +
Sbjct: 286 LAGYDDFNCNVWDALKA-----DRAGVLA---------------------------GHDN 313

Query: 237 AVSCLSLNAEQGLLYSGSWDKTLKVW 262
            VSCL +  +   + +GSWD  LK+W
Sbjct: 314 RVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 211 VKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL 270
           + ++++P   +++R  R  L+  H   +  +    +  LL S S D  L +W       +
Sbjct: 33  ITNNIDPVGRIQMR-TRRTLR-GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV 90

Query: 271 ESINAHDDAINSV 283
            +I      + + 
Sbjct: 91  HAIPLRSSWVMTC 103

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.2 bits (183), Expect = 6e-16
 Identities = 47/288 (16%), Positives = 95/288 (32%), Gaps = 23/288 (7%)

Query: 62  YNNNSGTRTPTSGEASPYLMSPWNNQPVSPYTKSPWLMPPYSPNENLLSSCNGLIGSIVR 121
           ++  +G    T    +  +     +            M     +         + G    
Sbjct: 44  WDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN 103

Query: 122 KEGHIYSLAASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIITGDSNKIFTG 179
                     +GD + + S  K I++W  +       F  +   V+ +    D   I + 
Sbjct: 104 VSSVSIM--PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC 161

Query: 180 HQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVS 239
             D  +R+W V+ K                 ++   +    +      +   I       
Sbjct: 162 SNDQTVRVWVVATKECKAE------------LREHRHVVECISWAPESSYSSISEATGSE 209

Query: 240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADG 298
                     L SGS DKT+K+W +S   CL ++  HD+ +  V+       + + + D 
Sbjct: 210 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 269

Query: 299 TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346
           T++VW  +   +       + L   E+ +T+L  ++ +  V  GS D 
Sbjct: 270 TLRVWDYK-NKR-----CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ 311

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.8 bits (169), Expect = 5e-14
 Identities = 38/182 (20%), Positives = 72/182 (39%), Gaps = 15/182 (8%)

Query: 125 HIYSLAASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQD 182
            +      G L+ + S+ + +RVW     +  +  + +  +V+ I    +S+        
Sbjct: 147 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 206

Query: 183 GKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLS 242
           G           P      GS    +D      +    + +          H + V  + 
Sbjct: 207 GSETKKSG---KPGPFLLSGS----RDKTIKMWDVSTGMCLMTLVG-----HDNWVRGVL 254

Query: 243 LNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVK 301
            ++    + S + DKTL+VW   + +C++++NAH+  + S+        V TGS D TVK
Sbjct: 255 FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVK 314

Query: 302 VW 303
           VW
Sbjct: 315 VW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.1 bits (144), Expect = 8e-11
 Identities = 39/262 (14%), Positives = 85/262 (32%), Gaps = 44/262 (16%)

Query: 123 EGH---IYSLAAS--GDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIITGDSNK 175
            GH   +  +       ++ + S+   I+VW  +        K ++  V+ I        
Sbjct: 14  SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 73

Query: 176 IFTGHQDGKIRIWKVSRKNPS--------VHKRVGSLPTFKDYVKSSVNPKNYVEVRRNR 227
           + +   D  I++W                    V  +P     V +S +    +   +  
Sbjct: 74  LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 133

Query: 228 NVLKI--RHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVA 285
             +K    H + V  +  N +  L+ S S D+T++VW ++  +C   +  H   +  +  
Sbjct: 134 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISW 193

Query: 286 GFDS---------------------LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQE 324
             +S                      + +GS D T+K+W                L+  +
Sbjct: 194 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS------TGMCLMTLVGHD 247

Query: 325 NAITALAVNQESAVVYCGSSDG 346
           N +  +  +     +   + D 
Sbjct: 248 NWVRGVLFHSGGKFILSCADDK 269

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.3 bits (121), Expect = 6e-08
 Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 218 KNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHD 277
           K ++     +  L   H   V+ +  +    ++ S S D T+KVW         ++  H 
Sbjct: 1   KEWIPRPPEKYALS-GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT 59

Query: 278 DAINSV 283
           D++  +
Sbjct: 60  DSVQDI 65

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.6 bits (114), Expect = 4e-07
 Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 21/163 (12%)

Query: 157 FKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVN 216
              +   V  +I     + + +  +D  I++W              +L    D V+    
Sbjct: 13  LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-----DFERTLKGHTDSVQDISF 67

Query: 217 PKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQG---------------LLYSGSWDKTLKV 261
             +   +      + I+ +D      +    G                + S S DKT+K+
Sbjct: 68  DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 127

Query: 262 WRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVW 303
           W +    C+++   H + +  V    D +L+ + S D TV+VW
Sbjct: 128 WEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 170

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.7 bits (109), Expect = 2e-06
 Identities = 14/79 (17%), Positives = 35/79 (44%), Gaps = 4/79 (5%)

Query: 115 LIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIIT 170
            + ++V  +  +  +     G  + + +D K +RVW  KN +      ++   V ++   
Sbjct: 239 CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH 298

Query: 171 GDSNKIFTGHQDGKIRIWK 189
             +  + TG  D  +++W+
Sbjct: 299 KTAPYVVTGSVDQTVKVWE 317

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.2 bits (183), Expect = 1e-15
 Identities = 52/320 (16%), Positives = 88/320 (27%), Gaps = 48/320 (15%)

Query: 1   MTNEGGGAIVVKPNNNLHRPKFGSFLYPESVIFSPRNNNNQDDGDYYSGHPKSSASSTSP 60
                  A    P N        S LY  SV FSP             G   ++ +    
Sbjct: 97  ARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP------------DGKFLATGAEDRL 144

Query: 61  RYNNNSGTRTPTSGEASPYLMSPWNNQPVSPYTKSPWLMPPYSPNENLLSSCNGLIGSIV 120
               +   R                +   S                +L +    L  SI 
Sbjct: 145 IRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE 204

Query: 121 RKEGHIYSLAASGDLLYTGSDSKNIRVW---------KNLKEFSGFKSNSGLVKAIIITG 171
                +      G  +  GS  + +RVW         +   E      +   V +++ T 
Sbjct: 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR 264

Query: 172 DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLK 231
           D   + +G  D  +++W +   N                        +         V  
Sbjct: 265 DGQSVVSGSLDRSVKLWNLQNANNKSD--------------------SKTPNSGTCEVTY 304

Query: 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-- 289
           I H D V  ++       + SGS D+ +  W       L  +  H +++ SV     S  
Sbjct: 305 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 364

Query: 290 -----LVFTGSADGTVKVWR 304
                +  TGS D   ++W+
Sbjct: 365 GPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.4 bits (116), Expect = 3e-07
 Identities = 51/330 (15%), Positives = 106/330 (32%), Gaps = 65/330 (19%)

Query: 78  PYLMSPWNNQPVSPYTKSPWLMPPYSPNENLLSSCNGLI------------GSIVRKEGH 125
           PY     +++P+ P+      +   S  + L    N                 + +   H
Sbjct: 5   PYNQRANHSKPIPPFLLD---LDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDH 61

Query: 126 ---IYSLAAS--GDLLYTGSDSKNIRVW-----KNLKEFSG---------------FKSN 160
              +  +  S  G+ L TG + K  +V+       +   S                  S+
Sbjct: 62  TSVVCCVKFSNDGEYLATGCN-KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 120

Query: 161 SGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNP--- 217
              ++++  + D   + TG +D  IRIW +  +   +  +      +      S +    
Sbjct: 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 180

Query: 218 -------KNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC- 269
                  + +       ++         +      +   + +GS D+ ++VW        
Sbjct: 181 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240

Query: 270 ------LESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLA----- 317
                  ES   H D++ SVV   D   V +GS D +VK+W  +     +          
Sbjct: 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 300

Query: 318 -QVLLKQENAITALAVNQESAVVYCGSSDG 346
               +  ++ + ++A  Q    +  GS D 
Sbjct: 301 EVTYIGHKDFVLSVATTQNDEYILSGSKDR 330

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.0 bits (115), Expect = 4e-07
 Identities = 24/158 (15%), Positives = 53/158 (33%), Gaps = 42/158 (26%)

Query: 123 EGHIYSLAAS--GDLLYTGSDSKNIRVW--------------KNLKEFSGFKSNSGLVKA 166
           +  +YS+  +  G  + +GS  +++++W               +      +  +   V +
Sbjct: 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313

Query: 167 IIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRN 226
           +  T +   I +G +D  +  W     NP     +  L   ++ V S             
Sbjct: 314 VATTQNDEYILSGSKDRGVLFWDKKSGNP-----LLMLQGHRNSVIS------------- 355

Query: 227 RNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI 264
                       +  SL  E  +  +GS D   ++W+ 
Sbjct: 356 --------VAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.2 bits (100), Expect = 3e-05
 Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 10/80 (12%)

Query: 123 EGHIYSLAAS--GDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIITG------D 172
           +  + S+A +   + + +GS  + +  W  K+       + +   V ++ +        +
Sbjct: 308 KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPE 367

Query: 173 SNKIFTGHQDGKIRIWKVSR 192
            N   TG  D K RIWK  +
Sbjct: 368 YNVFATGSGDCKARIWKYKK 387

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.4 bits (147), Expect = 4e-11
 Identities = 31/248 (12%), Positives = 78/248 (31%), Gaps = 29/248 (11%)

Query: 123 EGH---IYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITG-------- 171
           + H   I+S++A      + S    ++VW N    +    +      +  +G        
Sbjct: 11  KAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 70

Query: 172 -------DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKS------SVNPK 218
                  +   + T    G +  ++++R++ +       L      +K            
Sbjct: 71  AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGAS 130

Query: 219 NYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDD 278
           N   +        ++    +      A++    + +W  TL++        +ES      
Sbjct: 131 NDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQG-----TVESPMTPSQ 185

Query: 279 AINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAV 338
              SV      L+ TG  +GTV++                 ++   N+I ++  + + ++
Sbjct: 186 FATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL 245

Query: 339 VYCGSSDG 346
           +       
Sbjct: 246 LAIAHDSN 253

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 34/212 (16%), Positives = 64/212 (30%), Gaps = 30/212 (14%)

Query: 113 NGLIGSIVRKEGHIYSLAASGD-LLYTGSDSKNIRVWKNLKEFS--------GFKSNSGL 163
            G + S +       S+  S   L+ TG ++  +++ +                 +NS  
Sbjct: 174 QGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS 233

Query: 164 VKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEV 223
           ++++  +   + +   H         +            S+PT                 
Sbjct: 234 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA------ 287

Query: 224 RRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV 283
                     H   V  LS N     L S  WD  L+ W +   + + ++N H D I   
Sbjct: 288 ----------HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIE 337

Query: 284 VAGFDSLVFT--GSADGTVKVWRRELQGKGTK 313
               D L     G +     V+  +   KG +
Sbjct: 338 E---DILAVDEHGDSLAEPGVFDVKFLKKGWR 366

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.6 bits (142), Expect = 9e-11
 Identities = 20/126 (15%), Positives = 45/126 (35%), Gaps = 1/126 (0%)

Query: 180 HQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVS 239
               K     +S     +             ++S     +    R ++            
Sbjct: 160 PLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG 219

Query: 240 CLSLNAEQGLLYSGSWDKTLKVWRISD-CKCLESINAHDDAINSVVAGFDSLVFTGSADG 298
                 E+ L+ +GS D  + ++ +    K ++++NAH D +N+++    S + +  AD 
Sbjct: 220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADA 279

Query: 299 TVKVWR 304
            +K W 
Sbjct: 280 CIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (92), Expect = 2e-04
 Identities = 17/99 (17%), Positives = 25/99 (25%), Gaps = 32/99 (32%)

Query: 166 AIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRR 225
           A     + + + TG  D  I I+ V R    +                            
Sbjct: 220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA----------------------- 256

Query: 226 NRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI 264
                   H D V+ L        L S   D  +K W +
Sbjct: 257 --------HKDGVNNLLWETP-STLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 2e-04
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 9/61 (14%)

Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFT 293
           H   ++ L++N     L SGS+D  +  W  S          H + I S+         +
Sbjct: 12  HNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDNSKAQEYSS 62

Query: 294 G 294
            
Sbjct: 63  I 63

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.6 bits (90), Expect = 3e-04
 Identities = 10/52 (19%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 268 KCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQV 319
           + L++I+ H+  I ++    + L+ +GS DG +  W      +   + +  +
Sbjct: 4   EVLKTISGHNKGITALT--VNPLI-SGSYDGRIMEWSSSSMHQDHSNLIVSL 52

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.8 bits (88), Expect = 5e-04
 Identities = 18/124 (14%), Positives = 35/124 (28%), Gaps = 4/124 (3%)

Query: 70  TPTSGEASPYLMSPWNNQPVSPYTKSPWLMPPYSPNENLLSSCNGLIGSIVRKEGHIYSL 129
            P+    SP          +               +     +      S    E      
Sbjct: 164 KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEE 223

Query: 130 AASGDLLYTGSDSKNIRVW---KNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIR 186
               DL+ TGS   NI ++   + +K      ++   V  ++     + + +   D  I+
Sbjct: 224 EIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP-STLVSSGADACIK 282

Query: 187 IWKV 190
            W V
Sbjct: 283 RWNV 286

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 2e-10
 Identities = 35/194 (18%), Positives = 73/194 (37%), Gaps = 11/194 (5%)

Query: 123 EGH----IYSLAASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIITGDSNKI 176
           +GH    I  L   G+ + +GSD   ++VW     K       ++G V +  +  +    
Sbjct: 13  KGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIIS 72

Query: 177 FTGHQDGKIRIWKVSRKNPSVHKRVGSL----PTFKDYVKSSVNPKNYVEVRRNRNVLKI 232
            +  +  K+   +      +++    ++       K  V  S +    V        L +
Sbjct: 73  GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHV 132

Query: 233 RHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVF 292
                 +   +  +   + SG++D  +KVW      CL ++  H + +   +      V 
Sbjct: 133 LMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY-SLQFDGIHVV 191

Query: 293 TGSADGTVKVWRRE 306
           +GS D +++VW  E
Sbjct: 192 SGSLDTSIRVWDVE 205

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 2e-08
 Identities = 33/181 (18%), Positives = 65/181 (35%), Gaps = 9/181 (4%)

Query: 174 NKIFTGHQDGKIRIWKVSRKNP----SVHKRVGSLPTF--KDYVKSSVNPKNYVEVRRNR 227
            ++ +G  D  +++W    +        H        F     V  S++    V      
Sbjct: 148 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETG 207

Query: 228 NVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE--SINAHDDAINSVVA 285
           N +            +  +  +L SG+ D T+K+W I   +CL+         +  + + 
Sbjct: 208 NCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ 267

Query: 286 GFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345
              + V T S DGTVK+W  +  G+  ++ +          +  +  +    V   GS +
Sbjct: 268 FNKNFVITSSDDGTVKLWDLK-TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 326

Query: 346 G 346
           G
Sbjct: 327 G 327

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 3e-08
 Identities = 28/203 (13%), Positives = 56/203 (27%), Gaps = 41/203 (20%)

Query: 111 SCNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIIT 170
                + ++      +YSL   G  + +GS   +IRVW                    + 
Sbjct: 165 ETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME 224

Query: 171 GDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVL 230
              N + +G+ D  ++IW +         +  +                           
Sbjct: 225 LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVI---------- 274

Query: 231 KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA-----HDDAINSVVA 285
                                + S D T+K+W +   + + ++           +  + A
Sbjct: 275 ---------------------TSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA 313

Query: 286 GFDSLVF-TGSADGT----VKVW 303
               LV   GS +GT    + V 
Sbjct: 314 SNTKLVCAVGSRNGTEETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 1e-06
 Identities = 13/42 (30%), Positives = 23/42 (54%)

Query: 262 WRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVW 303
           WR  + K  + +  HDD + + +    + + +GS D T+KVW
Sbjct: 1   WRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVW 42

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 4e-10
 Identities = 15/71 (21%), Positives = 20/71 (28%), Gaps = 2/71 (2%)

Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF 292
           H   V  L          S   D  L  WR      +        ++ S     D   + 
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIV 322

Query: 293 TGSADGTVKVW 303
           TGS D    V+
Sbjct: 323 TGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 9e-06
 Identities = 8/93 (8%), Positives = 23/93 (24%), Gaps = 33/93 (35%)

Query: 172 DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLK 231
                 +  +D  +  W+                                       + +
Sbjct: 276 CGKWFVSTGKDNLLNAWRTPYGAS---------------------------------IFQ 302

Query: 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI 264
            +   +V    ++ +   + +GS DK   V+ +
Sbjct: 303 SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 3/65 (4%)

Query: 128 SLAASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKI 185
             A  G    +      +  W           K +S  V +  I+ D   I TG  D K 
Sbjct: 272 KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS-VLSCDISVDDKYIVTGSGDKKA 330

Query: 186 RIWKV 190
            +++V
Sbjct: 331 TVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 224 RRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI-----NAHDD 278
           R  R +  + H + V  ++++     +Y+G     +KVW IS       +        D+
Sbjct: 40  RHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDN 98

Query: 279 AINSV 283
            I S 
Sbjct: 99  YIRSC 103

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 5e-04
 Identities = 17/145 (11%), Positives = 46/145 (31%), Gaps = 9/145 (6%)

Query: 203 SLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVW 262
           S    K +     N     ++R  R + +      +  L      G   +   + +    
Sbjct: 192 SNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYC-PTGEWLAVGMESSNVEV 250

Query: 263 RISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLL 321
              +      ++ H+  + S+   +      +   D  +  WR       T +  +    
Sbjct: 251 LHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR-------TPYGASIFQS 303

Query: 322 KQENAITALAVNQESAVVYCGSSDG 346
           K+ +++ +  ++ +   +  GS D 
Sbjct: 304 KESSSVLSCDISVDDKYIVTGSGDK 328

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 7e-04
 Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 4/101 (3%)

Query: 247 QGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRR 305
           Q        D  +        + + ++N H + + +V     +  V+TG   G VKVW  
Sbjct: 22  QMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTISNPTRHVYTGG-KGCVKVWDI 79

Query: 306 ELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346
                          L ++N I +  +  +   +  G    
Sbjct: 80  S-HPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS 119

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.2 bits (136), Expect = 9e-10
 Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 3/73 (4%)

Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD--CKCLESINAHDDAINSVVAGFDS-L 290
             + +SC + N ++  +     +  + ++  S      +  +  H+  +  V    DS  
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65

Query: 291 VFTGSADGTVKVW 303
           + T   D    VW
Sbjct: 66  IVTCGTDRNAYVW 78

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.4 bits (108), Expect = 2e-06
 Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 6/69 (8%)

Query: 126 IYSLAAS--GDLLYTGSDSKNIRVW----KNLKEFSGFKSNSGLVKAIIITGDSNKIFTG 179
           I   A +     +    ++  + ++        +    K ++G V  +    DSN+I T 
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 180 HQDGKIRIW 188
             D    +W
Sbjct: 70  GTDRNAYVW 78

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.8 bits (96), Expect = 7e-05
 Identities = 10/106 (9%), Positives = 26/106 (24%), Gaps = 30/106 (28%)

Query: 164 VKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEV 223
           +       D  +I     + ++ I++ S            +   K+              
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQ------VHELKE-------------- 49

Query: 224 RRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC 269
                     H   V+ +    +   + +   D+   VW +     
Sbjct: 50  ----------HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 85

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 19/188 (10%), Positives = 47/188 (25%), Gaps = 15/188 (7%)

Query: 130 AASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK 189
           A   ++    + +         +      S+ G V  +  + + +++     D  + +  
Sbjct: 170 AYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD 229

Query: 190 VSRKNPSVHKRVGSLPTFKDYVK---------SSVNPKNYVEVRRNRNVLKIRHYDAVSC 240
             +K         +LP                    P  +        +      D    
Sbjct: 230 ADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQ 289

Query: 241 LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV-----AGFDSLVFTGS 295
            S           + DK       +        + H ++++ +          S   T  
Sbjct: 290 SSQRGLTARERFQNLDKKASSEGSAA-AGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTG 348

Query: 296 ADGTVKVW 303
            DG + +W
Sbjct: 349 MDGGMSIW 356

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 9/70 (12%), Positives = 23/70 (32%), Gaps = 5/70 (7%)

Query: 278 DAINSVVAGFD-SLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQES 336
           + I+      D + +     +  V ++ +     G K      L +    +T +    +S
Sbjct: 8   EPISCHAWNKDRTQIAICPNNHEVHIYEKS----GNKWVQVHELKEHNGQVTGVDWAPDS 63

Query: 337 AVVYCGSSDG 346
             +    +D 
Sbjct: 64  NRIVTCGTDR 73

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.3 bits (131), Expect = 2e-09
 Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV--VAGFDSLV 291
           H  +V  L+ + +   + S S DKT+K+W ++  K  ++I       +    +      +
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 296

Query: 292 FTGSADGTVKVWRRE 306
            + SA+G +     E
Sbjct: 297 VSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.9 bits (91), Expect = 3e-04
 Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 7/69 (10%)

Query: 125 HIYSLAASGDLLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIITGDSNKIFTG 179
              + +  G  + + S  K I++W     K  K              II T  +  + + 
Sbjct: 242 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA--LVSI 299

Query: 180 HQDGKIRIW 188
             +G I   
Sbjct: 300 SANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.8 bits (83), Expect = 0.002
 Identities = 7/70 (10%), Positives = 15/70 (21%), Gaps = 2/70 (2%)

Query: 238 VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSA 296
              L        +   +   ++    +      E    H                 +G  
Sbjct: 20  AVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78

Query: 297 DGTVKVWRRE 306
            G V++W   
Sbjct: 79  HGNVRIWDTT 88

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.5 bits (129), Expect = 6e-09
 Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 249 LLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGF----DSLVFTGSADGTVKVW 303
              +   D T++VW ++  KC++        + +   G     +  + + S DGT+  +
Sbjct: 265 KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.1 bits (94), Expect = 1e-04
 Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 133 GDLLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI 187
                T      IRVW     K +++++  K   G  +  ++   + +I +   DG +  
Sbjct: 263 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322

Query: 188 WKV 190
           +++
Sbjct: 323 YEL 325

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.4 bits (126), Expect = 1e-08
 Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES-INAHDDAINSVVAGFDSLVF 292
           H+  +S ++       +     +    ++ +   K + + I    D I SV     +LV 
Sbjct: 280 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVA 339

Query: 293 TGSADGTVKVW 303
               DG   + 
Sbjct: 340 AVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.0 bits (125), Expect = 2e-08
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 234 HYDAV-SCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVF 292
           H  +V +CL        + +G+ DK ++V+   + K L  ++ HD  + ++      ++ 
Sbjct: 11  HMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILV 68

Query: 293 TGSADGTVKVW 303
           +GS D TV+VW
Sbjct: 69  SGSTDRTVRVW 79

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 9e-04
 Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 6/72 (8%)

Query: 272 SINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALA 331
           ++  H  ++ + +   D+ V TG+ D  ++V+                L   +  + AL 
Sbjct: 7   TLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSI------NKKFLLQLSGHDGGVWALK 60

Query: 332 VNQESAVVYCGS 343
                 +V   +
Sbjct: 61  YAHGGILVSGST 72

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 2e-08
 Identities = 26/178 (14%), Positives = 53/178 (29%), Gaps = 46/178 (25%)

Query: 136 LYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNP 195
           + + S  + I+VW           N        +      + +G  D  IR+W +     
Sbjct: 151 IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI----- 205

Query: 196 SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW 255
                                             L++          +  +   + SG++
Sbjct: 206 -----------------------------ECGACLRVLEGHEELVRCIRFDNKRIVSGAY 236

Query: 256 DKTLKVWRI---------SDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVW 303
           D  +KVW +         +   CL ++  H   +  +   FD   + + S D T+ +W
Sbjct: 237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ--FDEFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 2e-08
 Identities = 29/187 (15%), Positives = 68/187 (36%), Gaps = 10/187 (5%)

Query: 126 IYSLAASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDG 183
           +Y L      + +G     I++W    L+       ++G V  +          +     
Sbjct: 18  VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTV 77

Query: 184 KIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVR-------RNRNVLKIRHYD 236
           ++          ++     ++   +      V       +         +  + ++    
Sbjct: 78  RVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH 137

Query: 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSA 296
             +   ++ +   + S S D+T+KVW  S C+ + ++N H   I  +    D LV +GS+
Sbjct: 138 RAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-DRLVVSGSS 196

Query: 297 DGTVKVW 303
           D T+++W
Sbjct: 197 DNTIRLW 203

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 2e-06
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINS 282
               V CL  + +   + SG  D T+K+W  +  +C   +  H  ++  
Sbjct: 14  TSKGVYCLQYDDQ--KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC 60

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.9 bits (122), Expect = 3e-08
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 3/91 (3%)

Query: 228 NVLKIR--HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI-NAHDDAINSVV 284
           ++ ++R  H  A++ LS +A+   L+S   +  +  W IS         + H   I  + 
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 285 AGFDSLVFTGSADGTVKVWRRELQGKGTKHF 315
                 +FT S D  +KV      G  +   
Sbjct: 63  TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKA 93

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.9 bits (109), Expect = 2e-06
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 251 YSGSWDKTLKVWRISDCKCLESINA---HDDAINSVVAGFDSLVFTGSADGTVKVWR 304
            +GS D ++ VW ++       I        ++NSV+   ++ + +   D  +K W 
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.5 bits (82), Expect = 0.003
 Identities = 16/119 (13%), Positives = 33/119 (27%), Gaps = 4/119 (3%)

Query: 77  SPYLMSPWNNQPVSPYTKSPWLMPPYSPNENLLSSCNGLIGSIVRKEGHIYSLAASGDLL 136
           +      ++N                    N     +    +    +    S +     L
Sbjct: 180 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 239

Query: 137 YTGSDSKNIRVW----KNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVS 191
            TGS   ++ VW     +        +++      +I  +   I +  QD  I+ W V 
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 3e-07
 Identities = 15/137 (10%), Positives = 38/137 (27%), Gaps = 17/137 (12%)

Query: 172 DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLK 231
           +         DG++ +     +    +                 N               
Sbjct: 205 EQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTN--------------- 249

Query: 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLV 291
                 V+ +  +     LY+   D  +  W +   K +++    ++     +A  D+++
Sbjct: 250 --LAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNIL 307

Query: 292 FTGSADGTVKVWRRELQ 308
              ++D T K      Q
Sbjct: 308 CLATSDDTFKTNAAIDQ 324

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 2e-06
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC---LESINAHDDAINSVVAGFDS- 289
             D +S + +   + LL   SWD +L V++         L     +   +       ++ 
Sbjct: 10  PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD 69

Query: 290 -LVFTGSADGTVKVW 303
             ++ G+  G +   
Sbjct: 70  LQIYVGTVQGEILKV 84

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 12/79 (15%), Positives = 31/79 (39%), Gaps = 5/79 (6%)

Query: 268 KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENA 326
           + ++   A  D I+ +       L+   S DG++ V++ +      K+      L+ ++ 
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFD---IQAKNVDLLQSLRYKHP 58

Query: 327 ITALAVNQES-AVVYCGSS 344
           +        +   +Y G+ 
Sbjct: 59  LLCCNFIDNTDLQIYVGTV 77

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 16/143 (11%), Positives = 42/143 (29%), Gaps = 37/143 (25%)

Query: 141 DSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKR 200
           +S     ++  +      + +  V +I  +     ++T   DG I  W +  +     K+
Sbjct: 231 NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR-----KK 285

Query: 201 VGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLK 260
           + +                               ++  S + +     +L   + D T K
Sbjct: 286 IKNFA----------------------------KFNEDSVVKIACSDNILCLATSDDTFK 317

Query: 261 VWRISDCKCLESINAHDDAINSV 283
                     ++I  +  +I  +
Sbjct: 318 TNA----AIDQTIELNASSIYII 336

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 47.2 bits (110), Expect = 1e-06
 Identities = 17/172 (9%), Positives = 35/172 (20%), Gaps = 21/172 (12%)

Query: 133 GDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSR 192
              LY  S                   +  ++           +             V R
Sbjct: 190 SKNLYYLSYRSLDPSP-----------DRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPR 238

Query: 193 KNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYS 252
              S          +K     +V+P +Y  +    +          S             
Sbjct: 239 SMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLES-----SILIYSVPVHGEFAAYYQG 293

Query: 253 GSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVW 303
                 L  + +   K    +    + +  +    D   V     DG +  +
Sbjct: 294 APEKGVLLKYDVKTRK----VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTF 341

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.1 bits (97), Expect = 6e-05
 Identities = 10/140 (7%), Positives = 38/140 (27%), Gaps = 8/140 (5%)

Query: 155 SGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNP--------SVHKRVGSLPT 206
               S            D +          +    +              V     ++  
Sbjct: 191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP 250

Query: 207 FKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD 266
            K     + N     ++ +N ++ ++    +   ++++ +   ++ G     L  +    
Sbjct: 251 AKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET 310

Query: 267 CKCLESINAHDDAINSVVAG 286
            +    ++   +A  S+ + 
Sbjct: 311 LEKKGQVDLPGNASMSLASV 330

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 21/249 (8%), Positives = 53/249 (21%), Gaps = 19/249 (7%)

Query: 61  RYNNNSGTRTPTSGEASPYLMSPWNNQPVSPYTKSPWLMPPYSPNEN-LLSSCNGLIGSI 119
                   R           ++P     +         +              +      
Sbjct: 93  DIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH 152

Query: 120 VRKEGHIYSLAASGD--LLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIF 177
           +             D  L      ++      + +       +  L+     +  + ++ 
Sbjct: 153 IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE--VFHPEDEFLINHPAYSQKAGRLV 210

Query: 178 TGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA 237
                GKI    +S  +      V +L   +            V   R  + + +     
Sbjct: 211 WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQR 270

Query: 238 VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS---LVFTG 294
                           +  + + V      + L         I+S+    D    L    
Sbjct: 271 ----------DEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALS 319

Query: 295 SADGTVKVW 303
           + D T+ + 
Sbjct: 320 TGDKTLYIH 328

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.3 bits (90), Expect = 5e-04
 Identities = 12/109 (11%), Positives = 34/109 (31%), Gaps = 3/109 (2%)

Query: 241 LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN-AHDDAINSVVAGFDS--LVFTGSAD 297
            +L A    +   ++   L V  ++     +S          + +   D+       +  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 298 GTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346
           G +     +         L+ V  +   ++ + A++ +   VY   +  
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPT 110

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 15/179 (8%), Positives = 45/179 (25%), Gaps = 20/179 (11%)

Query: 128 SLAASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGL-VKAIIITGDSNKIF-TGHQDG 183
           +L A  + +   +   N+ V    +   +              ++  D+   +   +  G
Sbjct: 3   ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYG 62

Query: 184 KIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSL 243
            I        +    K            +   +  ++      + V              
Sbjct: 63  DIYGI-----DLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVY---------ATVN 108

Query: 244 NAEQGLLYSGSWDKTLKVWRISDCKCLESINAHD--DAINSVVAGFDSLVFTGSADGTV 300
             ++   +       L+V+  +D    + +        +  + A  D  ++    D   
Sbjct: 109 PTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYK 167

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	347
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.98
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.98
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.96
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.95
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.95
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.94
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.94
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.93
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.92
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.92
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.91
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.9
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.9
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.88
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.87
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.87
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.83
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.82
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.81
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.78
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.78
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.74
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.7
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.65
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.58
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.56
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.55
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.55
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.52
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.42
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.41
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.41
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.38
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.28
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.28
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.12
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.07
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.05
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.94
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.88
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.83
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.65
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.63
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.56
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.47
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.47
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.47
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.46
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.37
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.34
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.34
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.34
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.29
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.26
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.16
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.13
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.87
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.54
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.51
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.3
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.62
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.27
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	94.97
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.35
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.85
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	93.69
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	93.4
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.99
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	92.75
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	92.0
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	91.99
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	91.94
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.71
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	91.64
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	91.29
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	91.06
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	90.89
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	90.17
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	89.9
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	89.88
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	89.62
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	89.33
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	87.47
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	87.22
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	86.14
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	85.31
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	84.62
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	80.82

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.98  E-value=4.4e-30  Score=226.32  Aligned_cols=227  Identities=17%  Similarity=0.205  Sum_probs=175.7

Q ss_pred             ceeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707          114 GLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK  189 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd  189 (347)
                      ...++|++|++.|++++++  +++|++|+.||+|+|||..  +.+..+..|...|.+++|+|++.++++|+.|+.+++|+
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~  125 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN  125 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccc
Confidence            3567899999999999974  7799999999999999965  45677889999999999999999999999999999999


Q ss_pred             cCCCCCceee--eeccccc--------------------------------------------------ccceEEeccCC
Q 043707          190 VSRKNPSVHK--RVGSLPT--------------------------------------------------FKDYVKSSVNP  217 (347)
Q Consensus       190 ~~~~~~~~~~--~~~~~~~--------------------------------------------------~~~~~~~~~~~  217 (347)
                      ..........  .......                                                  ...++..... 
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  204 (340)
T d1tbga_         126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC-  204 (340)
T ss_dssp             SSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET-
T ss_pred             ccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeec-
Confidence            8765432111  0000000                                                  0000000000 


Q ss_pred             CeEEEEee---cce-eeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEe--cCCCcEEEEEeCCCC-E
Q 043707          218 KNYVEVRR---NRN-VLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN--AHDDAINSVVAGFDS-L  290 (347)
Q Consensus       218 ~~~~~~~~---~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~--~h~~~v~~i~~~~~~-~  290 (347)
                      ...+.++.   ... ..+.+|...|++++|+|++.+|++|+.||.|++||++..+.+..+.  .+...|.+++|+|++ +
T Consensus       205 d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  284 (340)
T d1tbga_         205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL  284 (340)
T ss_dssp             TTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCE
T ss_pred             CceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCE
Confidence            01111111   111 1234689999999999999999999999999999999998887764  556779999999997 9


Q ss_pred             EEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       291 l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      |++|+.||.|++||+....      ++..+.+|...|++|+|+|++++|++|+.||+
T Consensus       285 l~~g~~dg~i~iwd~~~~~------~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~  335 (340)
T d1tbga_         285 LLAGYDDFNCNVWDALKAD------RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF  335 (340)
T ss_dssp             EEEEETTSCEEEEETTTCC------EEEEECCCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred             EEEEECCCEEEEEECCCCc------EEEEEcCCCCCEEEEEEeCCCCEEEEEccCCE
Confidence            9999999999999997543      56778899999999999999999999999985

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.98  E-value=3.4e-30  Score=226.72  Aligned_cols=202  Identities=16%  Similarity=0.155  Sum_probs=169.0

Q ss_pred             ceeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCCc----ceeeecCCCCeeEEEEeCCCCEEEEEeC--CCcE
Q 043707          114 GLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKE----FSGFKSNSGLVKAIIITGDSNKIFTGHQ--DGKI  185 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~~----~~~~~~h~~~V~~l~~sp~~~~l~s~~~--Dg~I  185 (347)
                      .....+.+|.+.|+++++  +|++|++|+.||+|+|||....    ...+..|.+.|.+++|+|++++|++++.  +..+
T Consensus        49 ~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~  128 (311)
T d1nr0a1          49 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG  128 (311)
T ss_dssp             SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred             ceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccc
Confidence            356677899999999986  5789999999999999996543    2457789999999999999999999986  4569


Q ss_pred             EEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCC-EEEEEeCCCcEEEEeC
Q 043707          186 RIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQG-LLYSGSWDKTLKVWRI  264 (347)
Q Consensus       186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~dg~i~vwdl  264 (347)
                      +||++++++.....                                .+|.+.|++++|+|++. .|++|+.|+.|++||+
T Consensus       129 ~v~~~~~~~~~~~l--------------------------------~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~  176 (311)
T d1nr0a1         129 HVFLFDTGTSNGNL--------------------------------TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG  176 (311)
T ss_dssp             EEEETTTCCBCBCC--------------------------------CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEET
T ss_pred             cccccccccccccc--------------------------------cccccccccccccccceeeecccccccccccccc
Confidence            99999877543221                                14889999999999887 4888999999999999


Q ss_pred             CCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCcccee-eehhhhhccCCcEEEEEEccCCCEEEEe
Q 043707          265 SDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKH-FLAQVLLKQENAITALAVNQESAVVYCG  342 (347)
Q Consensus       265 ~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~-~~~~~~~~h~~~V~~l~~~p~~~~l~sg  342 (347)
                      ++++++..+..|...|.++.|+|++ +|++++.|+.|++||+......... .......+|...|++++|+|++++|++|
T Consensus       177 ~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tg  256 (311)
T d1nr0a1         177 PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA  256 (311)
T ss_dssp             TTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEE
T ss_pred             cccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEE
Confidence            9999999999999999999999997 8999999999999999865431111 1123345789999999999999999999


Q ss_pred             cCCCC
Q 043707          343 SSDGL  347 (347)
Q Consensus       343 s~DG~  347 (347)
                      +.||+
T Consensus       257 s~Dg~  261 (311)
T d1nr0a1         257 SADKT  261 (311)
T ss_dssp             ETTSE
T ss_pred             eCCCe
Confidence            99983

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=8.3e-29  Score=214.97  Aligned_cols=226  Identities=21%  Similarity=0.294  Sum_probs=161.7

Q ss_pred             eEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCC-------------------
Q 043707          116 IGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGD-------------------  172 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~-------------------  172 (347)
                      ..+|.+|++.|+++++  ++++|+||+.||+|+|||..  +....+.+|...|.+++|+|+                   
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ   89 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccc
Confidence            4578999999999987  47799999999999999854  345555566666655555554                   


Q ss_pred             -----------------------CCEEEEEeCCCcEEEEecCCCCCceeeee--------cccccccceEEeccCCCeEE
Q 043707          173 -----------------------SNKIFTGHQDGKIRIWKVSRKNPSVHKRV--------GSLPTFKDYVKSSVNPKNYV  221 (347)
Q Consensus       173 -----------------------~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~  221 (347)
                                             ++.+++++.|+.+++||+++++.......        ...+....++....+....+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~  169 (317)
T d1vyhc1          90 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV  169 (317)
T ss_dssp             SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             ccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEE
Confidence                                   45566666777777777766543222110        01111111122222222111


Q ss_pred             EEee-cc-eeeeeecCCCeeEEEEcCCC--------------------CEEEEEeCCCcEEEEeCCCCEEEEEEecCCCc
Q 043707          222 EVRR-NR-NVLKIRHYDAVSCLSLNAEQ--------------------GLLYSGSWDKTLKVWRISDCKCLESINAHDDA  279 (347)
Q Consensus       222 ~~~~-~~-~~~~~~h~~~V~~l~~~~~~--------------------~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~  279 (347)
                      .... .. ......|...+.+++|+++.                    .++++++.|+.|++||+++++++..+.+|...
T Consensus       170 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~  249 (317)
T d1vyhc1         170 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW  249 (317)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred             EeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCC
Confidence            1111 11 11233577778888887653                    46888999999999999999999999999999


Q ss_pred             EEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          280 INSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       280 v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      |.+++++|++ +|++|+.||.|++||++...      ++..+.+|...|++|+|+|++++|++|+.||+
T Consensus       250 v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~  312 (317)
T d1vyhc1         250 VRGVLFHSGGKFILSCADDKTLRVWDYKNKR------CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT  312 (317)
T ss_dssp             EEEEEECSSSSCEEEEETTTEEEEECCTTSC------CCEEEECCSSCEEEEEECSSSSCEEEEETTSE
T ss_pred             EEEEEECCCCCEEEEEECCCeEEEEECCCCc------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCe
Confidence            9999999997 89999999999999997543      56778899999999999999999999999984

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-28  Score=218.40  Aligned_cols=224  Identities=17%  Similarity=0.277  Sum_probs=169.4

Q ss_pred             ceeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCCCc-------ceeeecCCCCeeEEEEeCCCCEEEEEeCCCc
Q 043707          114 GLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE-------FSGFKSNSGLVKAIIITGDSNKIFTGHQDGK  184 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~~~-------~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~  184 (347)
                      +.+.++ .|...|.|++++  |++|++|+ ||.|+|||+...       ......|.+.|.+++|+|++++|++|+.||.
T Consensus        43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~  120 (337)
T d1gxra_          43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST  120 (337)
T ss_dssp             EEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred             eEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccc
Confidence            456666 799999998874  77999998 799999996432       1233578899999999999999999999999


Q ss_pred             EEEEecCCCCCceeeeecc----------cccccceEEeccCCCeEE-EEeecc-eeeeeecCCCeeEEEEcCCCCEEEE
Q 043707          185 IRIWKVSRKNPSVHKRVGS----------LPTFKDYVKSSVNPKNYV-EVRRNR-NVLKIRHYDAVSCLSLNAEQGLLYS  252 (347)
Q Consensus       185 I~vwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s  252 (347)
                      |++||+.............          .+....++....+....+ ...... ......|...|.+++|++++..+++
T Consensus       121 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~  200 (337)
T d1gxra_         121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT  200 (337)
T ss_dssp             EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999998665432222211          111111222222222211 111111 2233458899999999999999999


Q ss_pred             EeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEE
Q 043707          253 GSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALA  331 (347)
Q Consensus       253 ~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~  331 (347)
                      ++.|+.+++||+++++.+..+. |...|.+++|+|++ +|++++.|+.|++||++....       .....|...|++++
T Consensus       201 ~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~-------~~~~~~~~~i~~v~  272 (337)
T d1gxra_         201 GGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-------YQLHLHESCVLSLK  272 (337)
T ss_dssp             EETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-------EEECCCSSCEEEEE
T ss_pred             ccccccccccccccceeecccc-cccceEEEEEcccccccceecccccccccccccccc-------ccccccccccceEE
Confidence            9999999999999999988776 78899999999987 899999999999999975432       23467889999999


Q ss_pred             EccCCCEEEEecCCCC
Q 043707          332 VNQESAVVYCGSSDGL  347 (347)
Q Consensus       332 ~~p~~~~l~sgs~DG~  347 (347)
                      |+|++++|++|+.||+
T Consensus       273 ~s~~g~~l~s~s~Dg~  288 (337)
T d1gxra_         273 FAYCGKWFVSTGKDNL  288 (337)
T ss_dssp             ECTTSSEEEEEETTSE
T ss_pred             ECCCCCEEEEEeCCCe
Confidence            9999999999999983

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=4.1e-29  Score=224.89  Aligned_cols=216  Identities=15%  Similarity=0.123  Sum_probs=173.1

Q ss_pred             CCCCCCCCCCCccccccc---------------ceeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCC----cc
Q 043707           96 PWLMPPYSPNENLLSSCN---------------GLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK----EF  154 (347)
Q Consensus        96 ~~~~~~~~p~~~~~~~~~---------------~~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~----~~  154 (347)
                      |.....|+|++..++.+.               ..+..+.+|++.|.++++  ++++|++|+.|++|+|||...    ..
T Consensus         9 pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~   88 (371)
T d1k8kc_           9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT   88 (371)
T ss_dssp             CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccc
Confidence            333446667776654321               156778899999999986  588999999999999999542    23


Q ss_pred             eeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeec
Q 043707          155 SGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRH  234 (347)
Q Consensus       155 ~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  234 (347)
                      ..+..|...|.+++|+|++++|++|+.|++|++|+++..........                            ....|
T Consensus        89 ~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~----------------------------~~~~~  140 (371)
T d1k8kc_          89 LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH----------------------------IKKPI  140 (371)
T ss_dssp             EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE----------------------------ECTTC
T ss_pred             cccccccccccccccccccccceeecccCcceeeeeecccccccccc----------------------------ccccc
Confidence            44567889999999999999999999999999999887653221110                            11148


Q ss_pred             CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC------------------CEEEEEEecCCCcEEEEEeCCCC-EEEEEe
Q 043707          235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD------------------CKCLESINAHDDAINSVVAGFDS-LVFTGS  295 (347)
Q Consensus       235 ~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~------------------~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~  295 (347)
                      ...|.+++|+|++.+|++|+.|++|++||+..                  ++.+.....|...|.+++|+|++ +|++++
T Consensus       141 ~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~  220 (371)
T d1k8kc_         141 RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS  220 (371)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred             ccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccc
Confidence            88999999999999999999999999999753                  24667778899999999999997 899999


Q ss_pred             CCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707          296 ADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       296 ~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                      .|+.|++||++...      .+..+..|..+|++++|+|++++|++|+++
T Consensus       221 ~d~~i~iwd~~~~~------~~~~~~~~~~~v~s~~fs~d~~~la~g~d~  264 (371)
T d1k8kc_         221 HDSTVCLADADKKM------AVATLASETLPLLAVTFITESSLVAAGHDC  264 (371)
T ss_dssp             TTTEEEEEEGGGTT------EEEEEECSSCCEEEEEEEETTEEEEEETTS
T ss_pred             cCCcceEEeeeccc------ceeeeecccccceeeeecCCCCEEEEEcCC
Confidence            99999999997543      456677889999999999999988877643

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=4.5e-28  Score=210.76  Aligned_cols=230  Identities=14%  Similarity=0.199  Sum_probs=172.1

Q ss_pred             ceeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCCC--cceee-ecCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707          114 GLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLK--EFSGF-KSNSGLVKAIIITGDSNKIFTGHQDGKIRIW  188 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~~--~~~~~-~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw  188 (347)
                      .+.+.+.+|++.|++++++  +++|++|+.||+|++||...  ....+ ..|...|.+++|+|+++ +++++.|+.+++|
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~   81 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVV   81 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEE
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEe
Confidence            4678999999999999874  77999999999999999653  34444 46889999999999985 5677789999999


Q ss_pred             ecCCCCCceeeeec-ccccccceEEeccCCC-------eEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 043707          189 KVSRKNPSVHKRVG-SLPTFKDYVKSSVNPK-------NYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLK  260 (347)
Q Consensus       189 d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~  260 (347)
                      +............. ........+....+..       ..+.++.............+.+++|+|++.+|++|+.||.|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~  161 (299)
T d1nr0a2          82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVH  161 (299)
T ss_dssp             CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred             ccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            98765322111110 0000001111111111       123334444444455667789999999999999999999999


Q ss_pred             EEeCCCCEEEE-EEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCE
Q 043707          261 VWRISDCKCLE-SINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAV  338 (347)
Q Consensus       261 vwdl~~~~~~~-~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~  338 (347)
                      +||+++++... ....|...|.+++|+|++ +|++++.|+.|++||+.....   ......+..|...|++++|+|++++
T Consensus       162 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~---~~~~~~~~~h~~~v~~l~~s~~~~~  238 (299)
T d1nr0a2         162 VYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE---LAHTNSWTFHTAKVACVSWSPDNVR  238 (299)
T ss_dssp             EEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE---ESCCCCCCCCSSCEEEEEECTTSSE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccc
Confidence            99998887654 345789999999999987 899999999999999975432   2234556789999999999999999


Q ss_pred             EEEecCCCC
Q 043707          339 VYCGSSDGL  347 (347)
Q Consensus       339 l~sgs~DG~  347 (347)
                      |++|+.||+
T Consensus       239 l~sgs~dg~  247 (299)
T d1nr0a2         239 LATGSLDNS  247 (299)
T ss_dssp             EEEEETTSC
T ss_pred             eEEEcCCCE
Confidence            999999984

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-27  Score=212.37  Aligned_cols=221  Identities=14%  Similarity=0.222  Sum_probs=172.1

Q ss_pred             eeeccccEEEEee--cCCEEEEecCCCcEEEEeCCC----cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCC
Q 043707          119 IVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK----EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSR  192 (347)
Q Consensus       119 l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~----~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~  192 (347)
                      ..+|++.|.++++  ++++|++|+.||.|++||...    ....+..|...|.+++|+|++.++++++.|+.|++|++.+
T Consensus        93 ~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~  172 (337)
T d1gxra_          93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN  172 (337)
T ss_dssp             CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3468889999887  578999999999999999652    2456778999999999999999999999999999999988


Q ss_pred             CCCceeeee--------cccccccceEEeccCCCe-EEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 043707          193 KNPSVHKRV--------GSLPTFKDYVKSSVNPKN-YVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWR  263 (347)
Q Consensus       193 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwd  263 (347)
                      ++.......        ...+....++....+... ++++..........|...|.+++|+|++.+|++++.|+.+++||
T Consensus       173 ~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d  252 (337)
T d1gxra_         173 QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLH  252 (337)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccceeecccccccceEEEEEcccccccceecccccccccc
Confidence            754322211        111122222222222222 22233344455567899999999999999999999999999999


Q ss_pred             CCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEe
Q 043707          264 ISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCG  342 (347)
Q Consensus       264 l~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sg  342 (347)
                      +++++.. ....|...|.+++|+|++ +|++++.||.|++||+.....      +.. ..|...|++++|+|++++|++|
T Consensus       253 ~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~------~~~-~~~~~~v~~~~~s~d~~~l~t~  324 (337)
T d1gxra_         253 VNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS------IFQ-SKESSSVLSCDISVDDKYIVTG  324 (337)
T ss_dssp             TTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE------EEE-EECSSCEEEEEECTTSCEEEEE
T ss_pred             ccccccc-cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCE------EEE-ccCCCCEEEEEEeCCCCEEEEE
Confidence            9988765 456799999999999997 999999999999999985542      222 4578899999999999999999


Q ss_pred             cCCCC
Q 043707          343 SSDGL  347 (347)
Q Consensus       343 s~DG~  347 (347)
                      +.||+
T Consensus       325 s~D~~  329 (337)
T d1gxra_         325 SGDKK  329 (337)
T ss_dssp             ETTSC
T ss_pred             eCCCe
Confidence            99985

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.4e-28  Score=211.33  Aligned_cols=222  Identities=14%  Similarity=0.156  Sum_probs=166.2

Q ss_pred             cceeEeeeeccccEEEEeecCCEEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCC
Q 043707          113 NGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSR  192 (347)
Q Consensus       113 ~~~i~~l~~h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~  192 (347)
                      .+++++|.+|.+.|++++++.  |+||+.||+|++||..+   ....|...|.++++++++ .+++++.|++|++|++..
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~--l~sgs~Dg~v~~Wd~~~---~~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~   76 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP--LISGSYDGRIMEWSSSS---MHQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITK   76 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT--TEEEETTSCEEETTTTE---EECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEE
T ss_pred             cceeEEECCCCCceEEEEECc--EEEEeCCCeEEEEECCC---CCCCCCCCEEEEEecCCC-eEEEEeeccccccccccc
Confidence            468999999999999999986  99999999999999764   346899999999998765 789999999999999865


Q ss_pred             CCCceeee-eccc--------------------------------------ccccceEEeccCCCeEEEEeec---ce--
Q 043707          193 KNPSVHKR-VGSL--------------------------------------PTFKDYVKSSVNPKNYVEVRRN---RN--  228 (347)
Q Consensus       193 ~~~~~~~~-~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~---~~--  228 (347)
                      .+...... ....                                      +....++....+.. .+.++..   ..  
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~v~~~~~~~~~~~~  155 (287)
T d1pgua2          77 HEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGN-TIQVFKLSDLEVSF  155 (287)
T ss_dssp             EECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTS-CEEEEETTEEEEEE
T ss_pred             cccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccc-eeeeeeccccceee
Confidence            32110000 0000                                      00001111111111 1222211   11  


Q ss_pred             eeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEE-EecCCCcEEEEEeCCCC-----------EEEEEeC
Q 043707          229 VLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES-INAHDDAINSVVAGFDS-----------LVFTGSA  296 (347)
Q Consensus       229 ~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~-~~~h~~~v~~i~~~~~~-----------~l~s~~~  296 (347)
                      .....|...+++++|+|++.+|++|+.||.|++||+.+++.+.. +.+|...|.+++|+|.+           +|++|+.
T Consensus       156 ~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~  235 (287)
T d1pgua2         156 DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL  235 (287)
T ss_dssp             ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEET
T ss_pred             eeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecC
Confidence            11224778899999999999999999999999999999987654 67899999999998743           7999999


Q ss_pred             CCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          297 DGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       297 dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      |++|+|||++...+     ....+.+|...|++++|+|++ .|++++.||+
T Consensus       236 D~~i~iw~~~~~~~-----~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~  280 (287)
T d1pgua2         236 DTNIFIYSVKRPMK-----IIKALNAHKDGVNNLLWETPS-TLVSSGADAC  280 (287)
T ss_dssp             TSCEEEEESSCTTC-----CEEETTSSTTCEEEEEEEETT-EEEEEETTSC
T ss_pred             CCeEEEEECCCCCe-----EEEEeCCCCCCeEEEEECCCC-EEEEEECCCe
Confidence            99999999975443     566778899999999999986 6889999985

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=3.7e-28  Score=218.58  Aligned_cols=194  Identities=15%  Similarity=0.160  Sum_probs=157.1

Q ss_pred             ccEEEEee--cCCEEEEecCCCcEEEEeCC--C--cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCce
Q 043707          124 GHIYSLAA--SGDLLYTGSDSKNIRVWKNL--K--EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSV  197 (347)
Q Consensus       124 ~~V~~l~~--~~~~l~tg~~dg~I~vwd~~--~--~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~  197 (347)
                      .+|+|+++  ++++||+|+.||.|+|||..  +  ....+++|.+.|.+|+|+|++++|++|+.|++|+|||+.++....
T Consensus         8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~   87 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP   87 (371)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccc
Confidence            46777775  57899999999999999953  2  456788999999999999999999999999999999998664222


Q ss_pred             eeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCE----EEEEE
Q 043707          198 HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK----CLESI  273 (347)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~----~~~~~  273 (347)
                      ...                              ..+|...|.+++|+|+++.|++++.|++|++|++....    .....
T Consensus        88 ~~~------------------------------~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~  137 (371)
T d1k8kc_          88 TLV------------------------------ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIK  137 (371)
T ss_dssp             EEE------------------------------CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEEC
T ss_pred             ccc------------------------------cccccccccccccccccccceeecccCcceeeeeecccccccccccc
Confidence            111                              12488899999999999999999999999999986543    23344


Q ss_pred             ecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccc------------eeeehhhhhccCCcEEEEEEccCCCEEE
Q 043707          274 NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGT------------KHFLAQVLLKQENAITALAVNQESAVVY  340 (347)
Q Consensus       274 ~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~------------~~~~~~~~~~h~~~V~~l~~~p~~~~l~  340 (347)
                      ..|...|.+++|+|++ +|++|+.|+.|++|+........            ...+......|...|.+++|+|++++|+
T Consensus       138 ~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  217 (371)
T d1k8kc_         138 KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA  217 (371)
T ss_dssp             TTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred             cccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccc
Confidence            5788999999999998 89999999999999986432110            0123344567888999999999999999


Q ss_pred             EecCCCC
Q 043707          341 CGSSDGL  347 (347)
Q Consensus       341 sgs~DG~  347 (347)
                      +++.||+
T Consensus       218 s~~~d~~  224 (371)
T d1k8kc_         218 WVSHDST  224 (371)
T ss_dssp             EEETTTE
T ss_pred             ccccCCc
Confidence            9999973

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.6e-26  Score=202.42  Aligned_cols=229  Identities=18%  Similarity=0.271  Sum_probs=165.0

Q ss_pred             eEeeeecccc-EEEEeecCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCC
Q 043707          116 IGSIVRKEGH-IYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSR  192 (347)
Q Consensus       116 i~~l~~h~~~-V~~l~~~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~  192 (347)
                      ..+|++|... |+|+++++++|+||+.||+|+|||..  +.+..+.+|.+.|.+++|+|++ +|++|+.||+|++|++..
T Consensus         5 ~~tL~GH~~~vitc~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~-~l~s~s~D~~i~iw~~~~   83 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK   83 (355)
T ss_dssp             EEEEECCSSSCEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT-EEEEEETTCCEEEEETTT
T ss_pred             cEEECCcCCCcEEEEEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC-EEEEEecccccccccccc
Confidence            5678999887 58999999999999999999999964  5578899999999999999864 899999999999999987


Q ss_pred             CCCceeeeecc----------cccccceEEeccCC---------------------------------------------
Q 043707          193 KNPSVHKRVGS----------LPTFKDYVKSSVNP---------------------------------------------  217 (347)
Q Consensus       193 ~~~~~~~~~~~----------~~~~~~~~~~~~~~---------------------------------------------  217 (347)
                      .+.........          .+....++....+.                                             
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (355)
T d1nexb2          84 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS  163 (355)
T ss_dssp             TEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSC
T ss_pred             cccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccc
Confidence            65321111000          00000111111000                                             


Q ss_pred             --------CeEE--------EEee---cce-eeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCC
Q 043707          218 --------KNYV--------EVRR---NRN-VLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHD  277 (347)
Q Consensus       218 --------~~~~--------~~~~---~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~  277 (347)
                              ..++        ..+.   ... ....++...+.++.+++++.++++++.|++|++||+++++++..+++|.
T Consensus       164 v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~  243 (355)
T d1nexb2         164 VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHT  243 (355)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred             ccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccccc
Confidence                    0000        0000   000 1122466778899999999999999999999999999999999999999


Q ss_pred             CcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCcc----------------------------------ceeeeh-hhhhc
Q 043707          278 DAINSVVAGFDSLVFTGSADGTVKVWRRELQGKG----------------------------------TKHFLA-QVLLK  322 (347)
Q Consensus       278 ~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~----------------------------------~~~~~~-~~~~~  322 (347)
                      ..|.++.+++ .+|++|+.||.|++||++...+.                                  ....++ ..+.+
T Consensus       244 ~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~  322 (355)
T d1nexb2         244 ALVGLLRLSD-KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILK  322 (355)
T ss_dssp             SCCCEEEECS-SEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTT
T ss_pred             cccccccccc-ceeeeeecccccccccccccceecccccCCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEecC
Confidence            9999998864 47888888888888888643220                                  001122 34567


Q ss_pred             cCCcEEEEEEccCCCEEEEecCCCC
Q 043707          323 QENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       323 h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      |...|++++|+|+ .+|++++.||.
T Consensus       323 ~~~~V~~v~~~~~-~~~~~~s~dg~  346 (355)
T d1nexb2         323 DADQIWSVNFKGK-TLVAAVEKDGQ  346 (355)
T ss_dssp             TCSEEEEEEEETT-EEEEEEESSSC
T ss_pred             CCCCEEEEEEcCC-eEEEEEECCCc
Confidence            8889999999986 57888888984

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=3.9e-27  Score=207.00  Aligned_cols=185  Identities=13%  Similarity=0.170  Sum_probs=158.4

Q ss_pred             EEEEeecCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecc
Q 043707          126 IYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGS  203 (347)
Q Consensus       126 V~~l~~~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~  203 (347)
                      +.+..++|+.|+.+. ++.|.+|+..  +....+.+|...|.+++|+|+|++|++|+.||+|+|||+...........  
T Consensus        22 ~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~--   98 (311)
T d1nr0a1          22 VLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI--   98 (311)
T ss_dssp             CCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE--
T ss_pred             EEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccccc--
Confidence            346667888888875 5679999965  45667889999999999999999999999999999999998764433221  


Q ss_pred             cccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC--CCcEEEEeCCCCEEEEEEecCCCcEE
Q 043707          204 LPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW--DKTLKVWRISDCKCLESINAHDDAIN  281 (347)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--dg~i~vwdl~~~~~~~~~~~h~~~v~  281 (347)
                                                  ..|...|.+++|+|++.+|++++.  ++.++||++++++.+..+.+|...|.
T Consensus        99 ----------------------------~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~  150 (311)
T d1nr0a1          99 ----------------------------PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMN  150 (311)
T ss_dssp             ----------------------------ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEE
T ss_pred             ----------------------------ccccCccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                        248899999999999999999986  46699999999999999999999999


Q ss_pred             EEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          282 SVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       282 ~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      +++|+|++  .|++|+.|+.|++||++...      ....+..|...|++++|+|++++|++|+.||.
T Consensus       151 ~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~------~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~  212 (311)
T d1nr0a1         151 SVDFKPSRPFRIISGSDDNTVAIFEGPPFK------FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT  212 (311)
T ss_dssp             EEEECSSSSCEEEEEETTSCEEEEETTTBE------EEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccccccceeeecccccccccccccccccc------cccccccccccccccccCcccccccccccccc
Confidence            99999987  68899999999999998432      45667789999999999999999999999984

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.9e-26  Score=207.28  Aligned_cols=221  Identities=23%  Similarity=0.352  Sum_probs=165.5

Q ss_pred             eccccEEEEee--cCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCc
Q 043707          121 RKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPS  196 (347)
Q Consensus       121 ~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~  196 (347)
                      .|...|.++++  ++++|++|+.||.|++|+..  +....+.+|...|.+++|++++..+++++.++.|++||+++....
T Consensus       119 ~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  198 (388)
T d1erja_         119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS  198 (388)
T ss_dssp             CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             CCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccc
Confidence            45667888887  47799999999999999955  446677889999999999999999999999999999999876543


Q ss_pred             eeeeec-------ccccccceEEe-ccCCCeEEEE-eec--------ceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcE
Q 043707          197 VHKRVG-------SLPTFKDYVKS-SVNPKNYVEV-RRN--------RNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTL  259 (347)
Q Consensus       197 ~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~-~~~--------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i  259 (347)
                      ......       ..+....++.. ..+....+.. ...        ......+|...|.+++|+|++.+|++++.||.|
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i  278 (388)
T d1erja_         199 LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV  278 (388)
T ss_dssp             EEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             cccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcE
Confidence            222111       11222223322 2222222111 111        111223588899999999999999999999999


Q ss_pred             EEEeCCCCE------------EEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCc
Q 043707          260 KVWRISDCK------------CLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENA  326 (347)
Q Consensus       260 ~vwdl~~~~------------~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~  326 (347)
                      ++||+++++            +......|...|.+++|+|++ +|++|+.||.|++||++++.      ++..+.+|...
T Consensus       279 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~------~~~~l~~H~~~  352 (388)
T d1erja_         279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN------PLLMLQGHRNS  352 (388)
T ss_dssp             EEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC------EEEEEECCSSC
T ss_pred             EEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCc------EEEEEeCCCCC
Confidence            999997653            344556789999999999987 99999999999999998543      56778899999


Q ss_pred             EEEEEE------ccCCCEEEEecCCCC
Q 043707          327 ITALAV------NQESAVVYCGSSDGL  347 (347)
Q Consensus       327 V~~l~~------~p~~~~l~sgs~DG~  347 (347)
                      |+++++      +|++.+|++|+.||+
T Consensus       353 V~~~~~~~~~~~spd~~~l~s~s~Dg~  379 (388)
T d1erja_         353 VISVAVANGSSLGPEYNVFATGSGDCK  379 (388)
T ss_dssp             EEEEEECSSCTTCTTCEEEEEEETTSE
T ss_pred             EEEEEEecCcccCCCCCEEEEEeCCCE
Confidence            999975      678999999999984

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.6e-26  Score=198.78  Aligned_cols=229  Identities=19%  Similarity=0.287  Sum_probs=140.6

Q ss_pred             ceeEeeeeccccE-EEEeecCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEec
Q 043707          114 GLIGSIVRKEGHI-YSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKV  190 (347)
Q Consensus       114 ~~i~~l~~h~~~V-~~l~~~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~  190 (347)
                      ++.+.|++|++.| .|++++|++|+||+.||+|+|||..  +.+..+.+|.+.|.+++|+|+  +|++|+.|+.+++|+.
T Consensus         7 ~~~~~l~GH~~~V~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~   84 (342)
T d2ovrb2           7 KSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNA   84 (342)
T ss_dssp             CCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEET
T ss_pred             CcCEEECCcCCceEEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceeccccccccc
Confidence            4567899999986 5789999999999999999999954  567889999999999999986  9999999999999998


Q ss_pred             CCCCCceeeeecccc--------------------------cc--------------------cceEEeccCCCeEEEEe
Q 043707          191 SRKNPSVHKRVGSLP--------------------------TF--------------------KDYVKSSVNPKNYVEVR  224 (347)
Q Consensus       191 ~~~~~~~~~~~~~~~--------------------------~~--------------------~~~~~~~~~~~~~~~~~  224 (347)
                      ...............                          ..                    ..++....+....+...
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~  164 (342)
T d2ovrb2          85 ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP  164 (342)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEG
T ss_pred             ccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeec
Confidence            765432111100000                          00                    00000001110000000


Q ss_pred             ecce--eeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCC--------------
Q 043707          225 RNRN--VLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD--------------  288 (347)
Q Consensus       225 ~~~~--~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~--------------  288 (347)
                      ....  ....+|...+.  .+.+++.+|++++.||+|++||++.++++..+..|...+.++.++++              
T Consensus       165 ~~~~~~~~~~~~~~~~~--~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iw  242 (342)
T d2ovrb2         165 ETETCLHTLQGHTNRVY--SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIW  242 (342)
T ss_dssp             GGTEEEEEECCCSSCEE--EEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEE
T ss_pred             ccceeeEEEcCcccccc--cccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCCCEEEEEcCCCEEEEE
Confidence            0001  11112333333  33445667777777777777777777666666666555555544321              


Q ss_pred             ----------------------------CEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEE
Q 043707          289 ----------------------------SLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVY  340 (347)
Q Consensus       289 ----------------------------~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~  340 (347)
                                                  .++++|+.||+|++||+++++. ..........+|...|++++|+|++.+|+
T Consensus       243 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~-i~~~~~~~~~~~~~~v~~v~~s~~~~~la  321 (342)
T d2ovrb2         243 DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF-IRNLVTLESGGSGGVVWRIRASNTKLVCA  321 (342)
T ss_dssp             ETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE-EEEEEECTTGGGTCEEEEEEECSSEEEEE
T ss_pred             ecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCE-EEEEecccCCCCCCCEEEEEECCCCCEEE
Confidence                                        1444555555555555543321 00011112346778899999999999999


Q ss_pred             EecCCCC
Q 043707          341 CGSSDGL  347 (347)
Q Consensus       341 sgs~DG~  347 (347)
                      +|+.||+
T Consensus       322 ~g~~dGt  328 (342)
T d2ovrb2         322 VGSRNGT  328 (342)
T ss_dssp             EECSSSS
T ss_pred             EEeCCCC
Confidence            9999984

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9.9e-26  Score=193.29  Aligned_cols=225  Identities=19%  Similarity=0.315  Sum_probs=159.5

Q ss_pred             eEeeeeccccEEEEeecCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 043707          116 IGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRK  193 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~  193 (347)
                      +.....|...|+|+++++++|+||+.||+|+|||..  +.+..+.+|.+.|.+++|  ++++|++|+.||.|++|++..+
T Consensus         8 i~~~~~~~~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~   85 (293)
T d1p22a2           8 IHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG   85 (293)
T ss_dssp             EECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred             EeccCCCCCCEEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccc
Confidence            455567788899999999999999999999999954  567889999999999887  5679999999999999999877


Q ss_pred             CCceeeeeccc------ccccceEEecc-----------------------------------------CCCeEEEEee-
Q 043707          194 NPSVHKRVGSL------PTFKDYVKSSV-----------------------------------------NPKNYVEVRR-  225 (347)
Q Consensus       194 ~~~~~~~~~~~------~~~~~~~~~~~-----------------------------------------~~~~~~~~~~-  225 (347)
                      ...........      .....++....                                         .....+..+. 
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~  165 (293)
T d1p22a2          86 EMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNT  165 (293)
T ss_dssp             CEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEET
T ss_pred             cccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCceeeecC
Confidence            53221111000      00000000000                                         0001111111 


Q ss_pred             --cce-eeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEE
Q 043707          226 --NRN-VLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKV  302 (347)
Q Consensus       226 --~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~v  302 (347)
                        ... ....++...|..+.++  +..+++++.||+|++||+++.+.+..+.+|...+..+... ..+|++|+.||.|++
T Consensus       166 ~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~l~sg~~dg~i~i  242 (293)
T d1p22a2         166 STCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD-NKRIVSGAYDGKIKV  242 (293)
T ss_dssp             TTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECC-SSEEEEEETTSCEEE
T ss_pred             CCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeeecccc-ceEEEEEcCCCEEEE
Confidence              111 1123456666666665  5689999999999999999999999999999888765542 348999999999999


Q ss_pred             EEcccCCcc---ceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          303 WRRELQGKG---TKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       303 wd~~~~~~~---~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      ||+......   ......+.+.+|...|++|+|+  +.+|++||.||+
T Consensus       243 wd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~  288 (293)
T d1p22a2         243 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDT  288 (293)
T ss_dssp             EEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSE
T ss_pred             EECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCE
Confidence            998753321   1122456678899999999995  578999999984

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=6.4e-25  Score=198.73  Aligned_cols=231  Identities=12%  Similarity=0.176  Sum_probs=155.5

Q ss_pred             eEeeeeccccEEEEeecCCEEEEecCCCcEEEEeCCCc--------ceeeecCCCCeeEEEE------eC-CCCEEEEEe
Q 043707          116 IGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKE--------FSGFKSNSGLVKAIII------TG-DSNKIFTGH  180 (347)
Q Consensus       116 i~~l~~h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~~~--------~~~~~~h~~~V~~l~~------sp-~~~~l~s~~  180 (347)
                      ....++|++.|+++++++++|+||+.|++|+|||....        ......|...+..+..      .. +...+++++
T Consensus         7 ~~~~~~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   86 (393)
T d1sq9a_           7 ANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS   86 (393)
T ss_dssp             EEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             eecCCcccCccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence            34567899999999999999999999999999984321        1222334444333322      11 234688999


Q ss_pred             CCCcEEEEecCCCCCceeeeecc---cc--------------------cccceEEeccCCCeEE-EEeec----------
Q 043707          181 QDGKIRIWKVSRKNPSVHKRVGS---LP--------------------TFKDYVKSSVNPKNYV-EVRRN----------  226 (347)
Q Consensus       181 ~Dg~I~vwd~~~~~~~~~~~~~~---~~--------------------~~~~~~~~~~~~~~~~-~~~~~----------  226 (347)
                      .||.|++|++.............   ..                    ....++....++...+ .+...          
T Consensus        87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~  166 (393)
T d1sq9a_          87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN  166 (393)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred             CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeee
Confidence            99999999987654322111100   00                    0011122222222222 11100          


Q ss_pred             ---------ceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEe------cCCCcEEEEEeCCCC-E
Q 043707          227 ---------RNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN------AHDDAINSVVAGFDS-L  290 (347)
Q Consensus       227 ---------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~------~h~~~v~~i~~~~~~-~  290 (347)
                               .......+...+.+++|+|++ +|++|+.||+|+|||+++++++..++      +|..+|++|+|+|++ +
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~  245 (393)
T d1sq9a_         167 WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL  245 (393)
T ss_dssp             CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTE
T ss_pred             eccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccce
Confidence                     001112355668999999987 89999999999999999998877654      688999999999998 9


Q ss_pred             EEEEeCCCc---EEEEEcccCCcc-------ceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          291 VFTGSADGT---VKVWRRELQGKG-------TKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       291 l~s~~~dg~---I~vwd~~~~~~~-------~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      |++|+.|++   |++||++.+...       ........+.+|...|++|+|+|++++|++||.||+
T Consensus       246 l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~  312 (393)
T d1sq9a_         246 LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK  312 (393)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE
T ss_pred             eeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCE
Confidence            999998874   999999865431       111223445689999999999999999999999984

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=8.4e-25  Score=196.45  Aligned_cols=197  Identities=20%  Similarity=0.317  Sum_probs=154.2

Q ss_pred             eeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCCc--cee------------------eecCCCCeeEEEEeCCCCE
Q 043707          118 SIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKE--FSG------------------FKSNSGLVKAIIITGDSNK  175 (347)
Q Consensus       118 ~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~~--~~~------------------~~~h~~~V~~l~~sp~~~~  175 (347)
                      ...+|++.|+|+++  +|++|++|+ |++|+|||..+.  +..                  ...|...|.+++|+|++++
T Consensus        57 ~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~  135 (388)
T d1erja_          57 KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF  135 (388)
T ss_dssp             EEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred             eeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCc
Confidence            33479999999987  477999987 899999996432  111                  2356778999999999999


Q ss_pred             EEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC
Q 043707          176 IFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW  255 (347)
Q Consensus       176 l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~  255 (347)
                      |++|+.||.|++||...++....                                ..+|...|.++++++++..+++++.
T Consensus       136 l~s~~~dg~v~i~~~~~~~~~~~--------------------------------~~~h~~~v~~~~~~~~~~~~~~~~~  183 (388)
T d1erja_         136 LATGAEDRLIRIWDIENRKIVMI--------------------------------LQGHEQDIYSLDYFPSGDKLVSGSG  183 (388)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEE--------------------------------ECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ceecccccccccccccccccccc--------------------------------ccccccccccccccccccccccccc
Confidence            99999999999999987643221                                1248999999999999999999999


Q ss_pred             CCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccce-eeehhhhhccCCcEEEEEEc
Q 043707          256 DKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTK-HFLAQVLLKQENAITALAVN  333 (347)
Q Consensus       256 dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~-~~~~~~~~~h~~~V~~l~~~  333 (347)
                      ++.+++||+++.........+...+..+.+.+++ +|++|+.|+.|++||.+....... ........+|...|++++|+
T Consensus       184 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  263 (388)
T d1erja_         184 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT  263 (388)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC
T ss_pred             ceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEEC
Confidence            9999999999999888887666655444444455 899999999999999986543111 11233445788999999999


Q ss_pred             cCCCEEEEecCCCC
Q 043707          334 QESAVVYCGSSDGL  347 (347)
Q Consensus       334 p~~~~l~sgs~DG~  347 (347)
                      |++++|++|+.||.
T Consensus       264 ~~~~~l~s~~~d~~  277 (388)
T d1erja_         264 RDGQSVVSGSLDRS  277 (388)
T ss_dssp             TTSSEEEEEETTSE
T ss_pred             CCCCEEEEEECCCc
Confidence            99999999999873

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.5e-24  Score=191.34  Aligned_cols=194  Identities=13%  Similarity=0.102  Sum_probs=153.1

Q ss_pred             eEeeeecc-ccEEEEeec----CCEEEEecCCCcEEEEeCCCc----------ceeeecCCCCeeEEEEeCCCCEEEEEe
Q 043707          116 IGSIVRKE-GHIYSLAAS----GDLLYTGSDSKNIRVWKNLKE----------FSGFKSNSGLVKAIIITGDSNKIFTGH  180 (347)
Q Consensus       116 i~~l~~h~-~~V~~l~~~----~~~l~tg~~dg~I~vwd~~~~----------~~~~~~h~~~V~~l~~sp~~~~l~s~~  180 (347)
                      +..+.+|. ..|++++++    +.+|++|+.||+|+|||....          ...+..|.++|.+++|++++++|++++
T Consensus        55 ~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  134 (325)
T d1pgua1          55 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG  134 (325)
T ss_dssp             EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             eEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceee
Confidence            44566664 579999874    569999999999999984311          123456889999999999999988876


Q ss_pred             C--CCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCC-EEEEEeCCC
Q 043707          181 Q--DGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQG-LLYSGSWDK  257 (347)
Q Consensus       181 ~--Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~dg  257 (347)
                      .  ++.+++|+.++++.....                                .+|...|.+++|+|++. ++++++.|+
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~--------------------------------~~h~~~v~~~~~~~~~~~~~~~~~~d~  182 (325)
T d1pgua1         135 EGRDNFGVFISWDSGNSLGEV--------------------------------SGHSQRINACHLKQSRPMRSMTVGDDG  182 (325)
T ss_dssp             CCSSCSEEEEETTTCCEEEEC--------------------------------CSCSSCEEEEEECSSSSCEEEEEETTT
T ss_pred             ccccceEEEEeecccccceee--------------------------------eecccccccccccccccceEEEeeccc
Confidence            4  678999999876532221                                14899999999999876 477899999


Q ss_pred             cEEEEeCCCCEEEEEEe---cCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEE
Q 043707          258 TLKVWRISDCKCLESIN---AHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAV  332 (347)
Q Consensus       258 ~i~vwdl~~~~~~~~~~---~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~  332 (347)
                      .+++||++..+....+.   .|...|.+++|+|++  +|++++.|+.|++||++...      ....+.+|..++..+.|
T Consensus       183 ~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~------~~~~l~~~~~~v~~~~~  256 (325)
T d1pgua1         183 SVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE------FLKYIEDDQEPVQGGIF  256 (325)
T ss_dssp             EEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC------EEEECCBTTBCCCSCEE
T ss_pred             ccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccc------cccccccccccccccee
Confidence            99999999888776664   567789999999974  89999999999999997543      45666777776665555


Q ss_pred             c---cCCCEEEEecCCCC
Q 043707          333 N---QESAVVYCGSSDGL  347 (347)
Q Consensus       333 ~---p~~~~l~sgs~DG~  347 (347)
                      +   |++++|++++.||+
T Consensus       257 s~~~~dg~~l~s~s~D~~  274 (325)
T d1pgua1         257 ALSWLDSQKFATVGADAT  274 (325)
T ss_dssp             EEEESSSSEEEEEETTSE
T ss_pred             eeeccCCCEEEEEeCCCe
Confidence            5   68999999999984

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.7e-25  Score=202.63  Aligned_cols=162  Identities=15%  Similarity=0.195  Sum_probs=126.9

Q ss_pred             CCEEEEecCCCcEEEEeCCCc--------------------ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCC
Q 043707          133 GDLLYTGSDSKNIRVWKNLKE--------------------FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSR  192 (347)
Q Consensus       133 ~~~l~tg~~dg~I~vwd~~~~--------------------~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~  192 (347)
                      +.++++++.||+|++|++...                    ......+...+.+++|+|++ +|++|+.||+|+|||+.+
T Consensus       136 ~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~  214 (393)
T d1sq9a_         136 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST  214 (393)
T ss_dssp             CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT
T ss_pred             ccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecc
Confidence            458999999999999984210                    11122345678999999997 999999999999999988


Q ss_pred             CCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCc---EEEEeCCCCEE
Q 043707          193 KNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKT---LKVWRISDCKC  269 (347)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~---i~vwdl~~~~~  269 (347)
                      ++.......                          .....+|...|++++|+|++++|++|+.|++   |++||++++++
T Consensus       215 ~~~~~~~~~--------------------------~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~  268 (393)
T d1sq9a_         215 LRPLYNFES--------------------------QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER  268 (393)
T ss_dssp             TEEEEEEEC--------------------------CC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred             ccccccccc--------------------------ccccccccceEEEcccccccceeeeecCCCCcceeeeccccccee
Confidence            754322211                          1112359999999999999999999999875   89999999988


Q ss_pred             EEEEe-------------cCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcE
Q 043707          270 LESIN-------------AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAI  327 (347)
Q Consensus       270 ~~~~~-------------~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V  327 (347)
                      +..+.             +|.+.|++|+|+|++ +|++|+.|++|+|||++.+.      ++.++.+|...|
T Consensus       269 ~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~------~~~~l~gH~~~v  334 (393)
T d1sq9a_         269 IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE------RITTLNMHCDDI  334 (393)
T ss_dssp             EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE------EEEEEECCGGGC
T ss_pred             eeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCC------EEEEECCcCCcc
Confidence            88774             799999999999998 99999999999999998543      455566665443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.92  E-value=4e-24  Score=185.45  Aligned_cols=227  Identities=13%  Similarity=0.092  Sum_probs=153.1

Q ss_pred             eEee-eeccccEEEEeecCC-EEEEecCCCcEEEEeCCCc-----ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707          116 IGSI-VRKEGHIYSLAASGD-LLYTGSDSKNIRVWKNLKE-----FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW  188 (347)
Q Consensus       116 i~~l-~~h~~~V~~l~~~~~-~l~tg~~dg~I~vwd~~~~-----~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw  188 (347)
                      +..+ ..|.+.|.++.+.++ .+++++.|+.|++|+....     ......+...+.+++|+++++.+++++ ++.+++|
T Consensus        47 ~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~  125 (299)
T d1nr0a2          47 NRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIY  125 (299)
T ss_dssp             EECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEE
T ss_pred             EEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccCCccccccccccccccccccccccccccccccccc-ccccccc
Confidence            4444 358888999887532 4566677899999984321     223345677888899999887666554 5688888


Q ss_pred             ecCCCCCce----eeeecccccccceEEeccCCCeEE-EEeecc--eeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 043707          189 KVSRKNPSV----HKRVGSLPTFKDYVKSSVNPKNYV-EVRRNR--NVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKV  261 (347)
Q Consensus       189 d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~v  261 (347)
                      +........    ...+...+....++....+....+ ++....  ......|...|++++|+|++.+|++++.|+.|++
T Consensus       126 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~  205 (299)
T d1nr0a2         126 SHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIP  205 (299)
T ss_dssp             ETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            865432111    111222233333333333333222 222222  2334578999999999999999999999999999


Q ss_pred             EeCCCCEEE---EEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCC
Q 043707          262 WRISDCKCL---ESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESA  337 (347)
Q Consensus       262 wdl~~~~~~---~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~  337 (347)
                      ||+.+++.+   ..+..|...|++++|+|++ +|++|+.||.|++||++.....   ........+...|.++.| ++++
T Consensus       206 ~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~---~~~~~~~~~~~~v~~~~~-~~~~  281 (299)
T d1nr0a2         206 YSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH---PIIIKGAHAMSSVNSVIW-LNET  281 (299)
T ss_dssp             EEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSC---CEEETTSSTTSCEEEEEE-EETT
T ss_pred             ccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcc---eEEEecCCCCCcEEEEEE-CCCC
Confidence            999877654   3456789999999999998 9999999999999999854431   111222234556777766 5578


Q ss_pred             EEEEecCCCC
Q 043707          338 VVYCGSSDGL  347 (347)
Q Consensus       338 ~l~sgs~DG~  347 (347)
                      +|++|+.||+
T Consensus       282 ~l~s~s~D~~  291 (299)
T d1nr0a2         282 TIVSAGQDSN  291 (299)
T ss_dssp             EEEEEETTSC
T ss_pred             EEEEEeCCCE
Confidence            9999999985

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.1e-23  Score=184.89  Aligned_cols=156  Identities=20%  Similarity=0.307  Sum_probs=133.4

Q ss_pred             eeeccccEEEEee--cCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 043707          119 IVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKN  194 (347)
Q Consensus       119 l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~  194 (347)
                      ...+...+.+...  .+.++++|+.|+.|++||..  +....+.+|.+.|.+++|+|++++|++|+.||.|++||++...
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~  259 (340)
T d1tbga_         180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ  259 (340)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             ccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccc
Confidence            3344555555554  46799999999999999965  4466788999999999999999999999999999999998765


Q ss_pred             CceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEe
Q 043707          195 PSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN  274 (347)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~  274 (347)
                      .......                              ..+...|.+++|+|++.+|++|+.||.|++||+.+++++..+.
T Consensus       260 ~~~~~~~------------------------------~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~  309 (340)
T d1tbga_         260 ELMTYSH------------------------------DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA  309 (340)
T ss_dssp             EEEEECC------------------------------TTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             ccccccc------------------------------ccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEc
Confidence            3222111                              1367789999999999999999999999999999999999999


Q ss_pred             cCCCcEEEEEeCCCC-EEEEEeCCCcEEEEE
Q 043707          275 AHDDAINSVVAGFDS-LVFTGSADGTVKVWR  304 (347)
Q Consensus       275 ~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd  304 (347)
                      +|.+.|++|+|+|++ +|++|+.||.|+|||
T Consensus       310 ~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            999999999999997 899999999999997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=5.7e-23  Score=181.09  Aligned_cols=194  Identities=14%  Similarity=0.090  Sum_probs=144.4

Q ss_pred             eeeccccEEEEeec--CCEEEEec--CCCcEEEEeC--CCcceeeecCCCCeeEEEEeCCCCE-EEEEeCCCcEEEEecC
Q 043707          119 IVRKEGHIYSLAAS--GDLLYTGS--DSKNIRVWKN--LKEFSGFKSNSGLVKAIIITGDSNK-IFTGHQDGKIRIWKVS  191 (347)
Q Consensus       119 l~~h~~~V~~l~~~--~~~l~tg~--~dg~I~vwd~--~~~~~~~~~h~~~V~~l~~sp~~~~-l~s~~~Dg~I~vwd~~  191 (347)
                      +..|.+.|.++.++  +++|++++  .++.+++|+.  .+.+..+.+|...|.+++|+|++.+ +++++.|+.|++||+.
T Consensus       111 ~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~  190 (325)
T d1pgua1         111 FQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP  190 (325)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETT
T ss_pred             cccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeeccccccccccc
Confidence            44577889998874  66777664  4667888874  4667788899999999999998765 7789999999999987


Q ss_pred             CCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCEEE
Q 043707          192 RKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCKCL  270 (347)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwdl~~~~~~  270 (347)
                      ..+.......                             ...|...|.+++|+|+ +.+|++++.|+.|++||+++++++
T Consensus       191 ~~~~~~~~~~-----------------------------~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~  241 (325)
T d1pgua1         191 PFKFSASDRT-----------------------------HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL  241 (325)
T ss_dssp             TBEEEEEECS-----------------------------SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE
T ss_pred             ccccceeccc-----------------------------ccCCCCccEEeeeccccceeccccccccceeeeeecccccc
Confidence            6542211111                             1147888999999996 689999999999999999999999


Q ss_pred             EEEecCCCcEEEE----EeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhc--cCCcEEEEEEccC-CCEEEEec
Q 043707          271 ESINAHDDAINSV----VAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLK--QENAITALAVNQE-SAVVYCGS  343 (347)
Q Consensus       271 ~~~~~h~~~v~~i----~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~--h~~~V~~l~~~p~-~~~l~sgs  343 (347)
                      ..+++|...+..+    .|.+..+|++++.|+.|+|||++.++      +++.+..  |...+..+++.+. +.+|++|+
T Consensus       242 ~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s  315 (325)
T d1pgua1         242 KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK------CVQKWTLDKQQLGNQQVGVVATGNGRIISLS  315 (325)
T ss_dssp             EECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTE------EEEEEECCTTCGGGCEEEEEEEETTEEEEEE
T ss_pred             ccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCC------EEEEEEecCCcccCeEEEEEECCCCEEEEEE
Confidence            9999888766544    44434499999999999999998543      3333333  3333344444332 35789999


Q ss_pred             CCCC
Q 043707          344 SDGL  347 (347)
Q Consensus       344 ~DG~  347 (347)
                      .||+
T Consensus       316 ~dg~  319 (325)
T d1pgua1         316 LDGT  319 (325)
T ss_dssp             TTSC
T ss_pred             CCCE
Confidence            9985

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=7.7e-23  Score=176.81  Aligned_cols=159  Identities=25%  Similarity=0.425  Sum_probs=139.1

Q ss_pred             ceeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCC----------------
Q 043707          114 GLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDS----------------  173 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~----------------  173 (347)
                      ..+..+.+|...+.++.+  ++++|++|+.|+.|++|+..  +....+..|...+.+++|+|++                
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  213 (317)
T d1vyhc1         134 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKS  213 (317)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC----
T ss_pred             eeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeee
Confidence            356778889999988886  47799999999999999965  4466778899999999998764                


Q ss_pred             ----CEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCE
Q 043707          174 ----NKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGL  249 (347)
Q Consensus       174 ----~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~  249 (347)
                          ..+++++.|+.|++||+++++....                                ..+|...|.+++|+|++.+
T Consensus       214 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~--------------------------------~~~~~~~v~~~~~~~~~~~  261 (317)
T d1vyhc1         214 GKPGPFLLSGSRDKTIKMWDVSTGMCLMT--------------------------------LVGHDNWVRGVLFHSGGKF  261 (317)
T ss_dssp             ---CCEEEEEETTSEEEEEETTTTEEEEE--------------------------------EECCSSCEEEEEECSSSSC
T ss_pred             ccCCceeEeccCCCEEEEEECCCCcEEEE--------------------------------EeCCCCCEEEEEECCCCCE
Confidence                4689999999999999987753221                                1248899999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEE
Q 043707          250 LYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWR  304 (347)
Q Consensus       250 l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd  304 (347)
                      |++|+.||.|+|||+++++++..+.+|.+.|++++|+|++ +|++|+.||+|+|||
T Consensus       262 l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         262 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            9999999999999999999999999999999999999987 899999999999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=3.9e-22  Score=173.97  Aligned_cols=233  Identities=15%  Similarity=0.089  Sum_probs=155.9

Q ss_pred             ceeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCC--c---ceeeecCCCCeeEEEEeCC-CCEEEEEeCCCcE
Q 043707          114 GLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK--E---FSGFKSNSGLVKAIIITGD-SNKIFTGHQDGKI  185 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~--~---~~~~~~h~~~V~~l~~sp~-~~~l~s~~~Dg~I  185 (347)
                      ++|..+.+|++.|++|++  ++++|++|+.||+|+|||...  .   +....+|.++|.+++|+|+ +.+|++|+.||.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            457788899999999987  578999999999999999532  2   2334479999999999985 5589999999999


Q ss_pred             EEEecCCCCCceeeeecccccc--------cceEEeccCCCeEEEEee---cc-eeeee------ecCCCeeEEEEcCCC
Q 043707          186 RIWKVSRKNPSVHKRVGSLPTF--------KDYVKSSVNPKNYVEVRR---NR-NVLKI------RHYDAVSCLSLNAEQ  247 (347)
Q Consensus       186 ~vwd~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~---~~-~~~~~------~h~~~V~~l~~~~~~  247 (347)
                      ++|++.................        ...+....... .+.++.   .. .....      ........+.+.+.+
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDG-LIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS  160 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTS-EEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred             eeeeccccccccccccccccccccccccccccccccccccc-ccceeeccccccceeeecccccccccceeeeeeeeccC
Confidence            9999987764333221111111        01111111111 111111   00 00011      122334566778888


Q ss_pred             CEEEEEeCCCcEEEEeCCCCEEE---EEEecCCCcEEEEEeCCC-C-EEEEEeCCCcEEEEEcccCCccce---------
Q 043707          248 GLLYSGSWDKTLKVWRISDCKCL---ESINAHDDAINSVVAGFD-S-LVFTGSADGTVKVWRRELQGKGTK---------  313 (347)
Q Consensus       248 ~~l~s~s~dg~i~vwdl~~~~~~---~~~~~h~~~v~~i~~~~~-~-~l~s~~~dg~I~vwd~~~~~~~~~---------  313 (347)
                      ..+++++.|+.|++||++..+..   .....+...+.++.+.+. + .+++++.||.+.+|+.........         
T Consensus       161 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~  240 (342)
T d1yfqa_         161 SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC  240 (342)
T ss_dssp             SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred             CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeee
Confidence            99999999999999999866432   223344555666666554 3 899999999999999874432100         


Q ss_pred             eeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          314 HFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       314 ~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      .........|...|++|+|+|++++|++|+.||+
T Consensus       241 ~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~  274 (342)
T d1yfqa_         241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI  274 (342)
T ss_dssp             CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC
T ss_pred             eeeccCCCcccccceeEEecCCccEEEEECCCCE
Confidence            1112233457778999999999999999999985

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1.3e-21  Score=168.45  Aligned_cols=154  Identities=19%  Similarity=0.294  Sum_probs=126.1

Q ss_pred             eccccEEEEeecCCEEEEecCCC-cEEEEeCCCc---ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCc
Q 043707          121 RKEGHIYSLAASGDLLYTGSDSK-NIRVWKNLKE---FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPS  196 (347)
Q Consensus       121 ~h~~~V~~l~~~~~~l~tg~~dg-~I~vwd~~~~---~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~  196 (347)
                      .+...+.++.++++.+++++.++ .|++|+....   ......|.+.|.+++|+|++.+|++|+.||.|++||+.+++..
T Consensus       118 ~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~  197 (287)
T d1pgua2         118 RLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK  197 (287)
T ss_dssp             ECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             cccceeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccc
Confidence            34556778888888888777765 7999996533   2223357789999999999999999999999999999876432


Q ss_pred             eeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC----------CCEEEEEeCCCcEEEEeCCC
Q 043707          197 VHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE----------QGLLYSGSWDKTLKVWRISD  266 (347)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~----------~~~l~s~s~dg~i~vwdl~~  266 (347)
                      ...                               +..|...|.+++|+|.          +.+|++|+.|++|+|||+++
T Consensus       198 ~~~-------------------------------~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~  246 (287)
T d1pgua2         198 TSR-------------------------------WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR  246 (287)
T ss_dssp             ECC-------------------------------SCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSC
T ss_pred             ccc-------------------------------ccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCC
Confidence            111                               1248899999999874          46899999999999999976


Q ss_pred             -CEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 043707          267 -CKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRR  305 (347)
Q Consensus       267 -~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~  305 (347)
                       .+.+..+.+|...|+++.|+|++.|++++.|+.|++|++
T Consensus       247 ~~~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         247 PMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             TTCCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             CCeEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence             567777889999999999999999999999999999986

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.87  E-value=3.1e-21  Score=170.64  Aligned_cols=181  Identities=12%  Similarity=0.053  Sum_probs=148.9

Q ss_pred             EEEEee-cCCEEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCC--cEEEEecCCCCCceeeeec
Q 043707          126 IYSLAA-SGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDG--KIRIWKVSRKNPSVHKRVG  202 (347)
Q Consensus       126 V~~l~~-~~~~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg--~I~vwd~~~~~~~~~~~~~  202 (347)
                      ...++| +|+++++++. |.|++||..........|...|.+++|+|||++|++++.+.  .|++||+++++....    
T Consensus         7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~----   81 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKF----   81 (360)
T ss_dssp             EEEEEECGGGCEEEEET-TEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEEC----
T ss_pred             cccccCCCCCEEEEEEC-CeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEe----
Confidence            467888 8999998874 79999997655444457999999999999999998877654  799999988753221    


Q ss_pred             ccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEE
Q 043707          203 SLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINS  282 (347)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~  282 (347)
                                                   ..|...|.+++|+|++++|++++.++.+++|++.++++...+..|...+.+
T Consensus        82 -----------------------------~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (360)
T d1k32a3          82 -----------------------------EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITD  132 (360)
T ss_dssp             -----------------------------CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCC
T ss_pred             -----------------------------eCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccc
Confidence                                         148899999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCC-EEEEE----------eCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707          283 VVAGFDS-LVFTG----------SADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL  347 (347)
Q Consensus       283 i~~~~~~-~l~s~----------~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~  347 (347)
                      ++|+|++ +|+.+          ..++.+++||+....       ...+..+...+..++|+|+|++|++++.|+.
T Consensus       133 ~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~-------~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~  201 (360)
T d1k32a3         133 FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-------IFAATTENSHDYAPAFDADSKNLYYLSYRSL  201 (360)
T ss_dssp             EEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-------EEECSCSSSBEEEEEECTTSCEEEEEESCCC
T ss_pred             hhhccceeeeeeeccccccceeeccccceeeeccccCc-------eeeecccccccccccccCCCCEEEEEeCCCc
Confidence            9999998 66533          345679999997442       2334456778899999999999999998863

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.2e-20  Score=164.78  Aligned_cols=160  Identities=20%  Similarity=0.379  Sum_probs=133.0

Q ss_pred             ceeEeeeeccccEEEEeecCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecC
Q 043707          114 GLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVS  191 (347)
Q Consensus       114 ~~i~~l~~h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~  191 (347)
                      ..+..+.+|...+.++.+++.+|++|+.||.|++||..  +.+..+..|...|.++.++++  +|++|+.||.|++||+.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~s~d~~i~iwd~~  245 (342)
T d2ovrb2         168 TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIK  245 (342)
T ss_dssp             EEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETT--EEEEEETTSCEEEEETT
T ss_pred             eeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCCC--EEEEEcCCCEEEEEecc
Confidence            35677888999999999999999999999999999955  556778889999999888765  99999999999999998


Q ss_pred             CCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEE
Q 043707          192 RKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE  271 (347)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~  271 (347)
                      ..+........                             ..|...+.++.++  ++++++|+.||+|+|||+++++++.
T Consensus       246 ~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~  294 (342)
T d2ovrb2         246 TGQCLQTLQGP-----------------------------NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIR  294 (342)
T ss_dssp             TCCEEEEECST-----------------------------TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             ccccccccccc-----------------------------ceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEE
Confidence            77533222111                             1266677777775  4699999999999999999999998


Q ss_pred             EEe-----cCCCcEEEEEeCCCC-EEEEEeCCCc----EEEEEcc
Q 043707          272 SIN-----AHDDAINSVVAGFDS-LVFTGSADGT----VKVWRRE  306 (347)
Q Consensus       272 ~~~-----~h~~~v~~i~~~~~~-~l~s~~~dg~----I~vwd~~  306 (347)
                      .+.     +|...|++++|+|++ +|++|+.||+    |++||+.
T Consensus       295 ~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         295 NLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             EEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             EEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence            874     577789999999998 7888888885    9999986

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.83  E-value=8.2e-20  Score=161.32  Aligned_cols=172  Identities=11%  Similarity=0.122  Sum_probs=132.8

Q ss_pred             CCCC-CCcccccc-----------cceeEeeeeccccEEEEee--cCCEEEEecCCC--cEEEEeCC-CcceeeecCCCC
Q 043707          101 PYSP-NENLLSSC-----------NGLIGSIVRKEGHIYSLAA--SGDLLYTGSDSK--NIRVWKNL-KEFSGFKSNSGL  163 (347)
Q Consensus       101 ~~~p-~~~~~~~~-----------~~~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg--~I~vwd~~-~~~~~~~~h~~~  163 (347)
                      -|+| +|+.++..           .+.+..+ .|.+.|.++.|  +|++|++++.+.  .|++||.. .....+..|...
T Consensus         9 ~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~   87 (360)
T d1k32a3           9 DFSPLDGDLIAFVSRGQAFIQDVSGTYVLKV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGN   87 (360)
T ss_dssp             EEEECGGGCEEEEETTEEEEECTTSSBEEEC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCS
T ss_pred             cccCCCCCEEEEEECCeEEEEECCCCcEEEc-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCce
Confidence            4666 66655422           2334444 68999999887  577777665443  79999965 346677889999


Q ss_pred             eeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEE
Q 043707          164 VKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSL  243 (347)
Q Consensus       164 V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  243 (347)
                      |.+++|+|++++|++++.++.+++|++.+++.....                                ..|...+.+++|
T Consensus        88 v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~  135 (360)
T d1k32a3          88 VFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE--------------------------------RSREAMITDFTI  135 (360)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--------------------------------ECSSSCCCCEEE
T ss_pred             EEeeeecccccccceeccccccccccccccceeeee--------------------------------ecccccccchhh
Confidence            999999999999999999999999999887632221                                137778899999


Q ss_pred             cCCCCEEEEEe----------CCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcc
Q 043707          244 NAEQGLLYSGS----------WDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRE  306 (347)
Q Consensus       244 ~~~~~~l~s~s----------~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~  306 (347)
                      +|++++|+.+.          .++.+++||+.+++.... ..+...+..+.|+|++ .|++++.|+.+++|+..
T Consensus       136 spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~  208 (360)
T d1k32a3         136 SDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA-TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV  208 (360)
T ss_dssp             CTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC-SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred             ccceeeeeeeccccccceeeccccceeeeccccCceeee-cccccccccccccCCCCEEEEEeCCCceEccccc
Confidence            99999998654          355699999998876544 4467778899999998 88999999999999854

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=4.8e-19  Score=154.06  Aligned_cols=222  Identities=14%  Similarity=0.116  Sum_probs=140.6

Q ss_pred             eeeeccccEEEEeec---CCEEEEecCCCcEEEEeCCCc--ceeeecC-CCCeeEEEEeCCCCEEEEEeCCCcEEEEecC
Q 043707          118 SIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLKE--FSGFKSN-SGLVKAIIITGDSNKIFTGHQDGKIRIWKVS  191 (347)
Q Consensus       118 ~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~~~--~~~~~~h-~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~  191 (347)
                      ...+|.+.|++++|.   +.+|++|+.||.|++|+....  ......+ ........+.++...+++++.|+++++||++
T Consensus        51 ~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~  130 (342)
T d1yfqa_          51 QSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPR  130 (342)
T ss_dssp             EEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHH
T ss_pred             EecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeecc
Confidence            334699999999874   448999999999999996533  2233333 3344555666788899999999999999987


Q ss_pred             CCCCceeeeeccc--------------ccccceEEeccCCCeEE-EEeecce----eeeeecCCCeeEEEEcC-CCCEEE
Q 043707          192 RKNPSVHKRVGSL--------------PTFKDYVKSSVNPKNYV-EVRRNRN----VLKIRHYDAVSCLSLNA-EQGLLY  251 (347)
Q Consensus       192 ~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~h~~~V~~l~~~~-~~~~l~  251 (347)
                      .............              +....++....+....+ .+.....    .....+...+.+..+.+ ++..++
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (342)
T d1yfqa_         131 NYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYA  210 (342)
T ss_dssp             HHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEE
T ss_pred             ccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEE
Confidence            6543222111100              00111112222211111 1111111    11122344555666555 678999


Q ss_pred             EEeCCCcEEEEeCCCCE---------EEEE------EecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceee
Q 043707          252 SGSWDKTLKVWRISDCK---------CLES------INAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHF  315 (347)
Q Consensus       252 s~s~dg~i~vwdl~~~~---------~~~~------~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~  315 (347)
                      +++.||.+.+|++....         ....      ...|...|++|+|+|++ +|++|+.||.|+|||++...      
T Consensus       211 ~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~------  284 (342)
T d1yfqa_         211 CSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK------  284 (342)
T ss_dssp             EEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE------
T ss_pred             eecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCc------
Confidence            99999999999986432         1111      12466789999999987 99999999999999998543      


Q ss_pred             ehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          316 LAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       316 ~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      .+..+..+ ..+..++|+|++++|++++.|+
T Consensus       285 ~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd  314 (342)
T d1yfqa_         285 KIKNFAKF-NEDSVVKIACSDNILCLATSDD  314 (342)
T ss_dssp             EEEECCCC-SSSEEEEEEECSSEEEEEEECT
T ss_pred             EEEEecCC-CCCEEEEEEeCCCEEEEEEcCC
Confidence            23333322 2445677888899999988775

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.4e-18  Score=147.95  Aligned_cols=187  Identities=17%  Similarity=0.281  Sum_probs=129.3

Q ss_pred             cceeEeeeeccccEEEEeecCCEEEEecCCCcEEEEeCCCc---------------------------------------
Q 043707          113 NGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKE---------------------------------------  153 (347)
Q Consensus       113 ~~~i~~l~~h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~~~---------------------------------------  153 (347)
                      .+++.++.+|++.|+++++++++|++|+.||.|++|+....                                       
T Consensus        45 ~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (293)
T d1p22a2          45 LECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS  124 (293)
T ss_dssp             CCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSS
T ss_pred             CcEEEEEecCCCCEeeeecccceeecccccccccccccccccccccccccccccccccccccceeecccccceeEeeccc
Confidence            34688899999999999999999999999999999984211                                       


Q ss_pred             ------ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeeccc-----cc-ccceEEeccCCCeEE
Q 043707          154 ------FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSL-----PT-FKDYVKSSVNPKNYV  221 (347)
Q Consensus       154 ------~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~  221 (347)
                            ...+..|...|.++.+.+.  .+++++.|+.|++||+++.+..........     .. ...++....+....+
T Consensus       125 ~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i  202 (293)
T d1p22a2         125 PTDITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRL  202 (293)
T ss_dssp             SSCCEEEEEECCCSSCEEEEEEETT--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEE
T ss_pred             cccccccccccccccccccceeccc--ccccccCCCceeeecCCCCcEEEEEcccccccccccCCCCeEEEecCCCEEEE
Confidence                  0112345666777766654  889999999999999998865433221111     11 111222222222221


Q ss_pred             -EEeeccee-eeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC---------CEEEEEEecCCCcEEEEEeCCCCE
Q 043707          222 -EVRRNRNV-LKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD---------CKCLESINAHDDAINSVVAGFDSL  290 (347)
Q Consensus       222 -~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~---------~~~~~~~~~h~~~v~~i~~~~~~~  290 (347)
                       +....... ....|...+.+  +.+++.+|++|+.||.|++||+..         ..++..+.+|.+.|++++|++ .+
T Consensus       203 ~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~-~~  279 (293)
T d1p22a2         203 WDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE-FQ  279 (293)
T ss_dssp             EETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECS-SC
T ss_pred             Eecccceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcC-CE
Confidence             11122211 22235555554  556788999999999999999742         357888999999999999953 48


Q ss_pred             EEEEeCCCcEEEEE
Q 043707          291 VFTGSADGTVKVWR  304 (347)
Q Consensus       291 l~s~~~dg~I~vwd  304 (347)
                      |++|+.||+|+|||
T Consensus       280 l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         280 IVSSSHDDTILIWD  293 (293)
T ss_dssp             EEECCSSSEEEEEC
T ss_pred             EEEEecCCEEEEeC
Confidence            99999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=3.1e-18  Score=149.99  Aligned_cols=191  Identities=15%  Similarity=0.214  Sum_probs=138.7

Q ss_pred             eeEeeeeccccEEEEeecCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCC
Q 043707          115 LIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSR  192 (347)
Q Consensus       115 ~i~~l~~h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~  192 (347)
                      .+.....|...+.+..+++++++++..|+.|++||..  +......++...+.++.|+|++.++++++.|+.|++||+++
T Consensus       153 ~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~  232 (355)
T d1nexb2         153 FVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN  232 (355)
T ss_dssp             EEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred             eeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccc
Confidence            4566667888899999999999999999999999965  34556777888999999999999999999999999999998


Q ss_pred             CCCceeeeeccc-----ccccceEE-eccCCCeEEEEeecceeeeeecCCCeeEE-EEcCCCCEEEEEeCCCcEEEEeCC
Q 043707          193 KNPSVHKRVGSL-----PTFKDYVK-SSVNPKNYVEVRRNRNVLKIRHYDAVSCL-SLNAEQGLLYSGSWDKTLKVWRIS  265 (347)
Q Consensus       193 ~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~V~~l-~~~~~~~~l~s~s~dg~i~vwdl~  265 (347)
                      +...........     .....++. ...++...+............|...+.++ .+++++.+|++|+ |++|+|||++
T Consensus       233 ~~~~~~~~~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~  311 (355)
T d1nexb2         233 GELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLR  311 (355)
T ss_dssp             CCEEEEECCCSSCCCEEEECSSEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEE-TTEEEEEETT
T ss_pred             cccccccccccccccccccccceeeeeecccccccccccccceecccccCCceEEEEEcCCCCEEEEEe-CCEEEEEECC
Confidence            765433221111     01112222 22222222211122223334455666555 4566777777665 8999999999


Q ss_pred             CCEEEE-EEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcc
Q 043707          266 DCKCLE-SINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRE  306 (347)
Q Consensus       266 ~~~~~~-~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~  306 (347)
                      +++++. .+.+|.+.|.+++|+|+.++++++.||+++||.+.
T Consensus       312 tg~~~~~~~~~~~~~V~~v~~~~~~~~~~~s~dg~~~l~~~d  353 (355)
T d1nexb2         312 SGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILD  353 (355)
T ss_dssp             TCCBCCSCTTTTCSEEEEEEEETTEEEEEEESSSCEEEEEEE
T ss_pred             CCCEEEEEecCCCCCEEEEEEcCCeEEEEEECCCcEEEEEEe
Confidence            999885 46789999999999998888899999998877653

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=5e-18  Score=155.03  Aligned_cols=179  Identities=9%  Similarity=0.064  Sum_probs=136.2

Q ss_pred             EEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEE
Q 043707          135 LLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVK  212 (347)
Q Consensus       135 ~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~  212 (347)
                      ++++.+.||+|.|||..  +.+..+..+ ..+..++|+|||+++++++.||+|++||+.+++......+...        
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~--------  104 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG--------  104 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC--------
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecC--------
Confidence            46899999999999954  567777766 4699999999999999999999999999988765433322211        


Q ss_pred             eccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEE-EEEeCCCcEEEEeCCCCEEEEEEecC-----------CCcE
Q 043707          213 SSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLL-YSGSWDKTLKVWRISDCKCLESINAH-----------DDAI  280 (347)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~dg~i~vwdl~~~~~~~~~~~h-----------~~~v  280 (347)
                                         .+|...+....|+|||++| +++..+++|+|||..+++++..+..|           ....
T Consensus       105 -------------------~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~  165 (432)
T d1qksa2         105 -------------------SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRV  165 (432)
T ss_dssp             -------------------SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCE
T ss_pred             -------------------CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCce
Confidence                               1244556666788999976 67788999999999999998887654           3445


Q ss_pred             EEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          281 NSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       281 ~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      ..+.+++++  ++++...++.|.+||......     .......+...+.+++|+|+|+++++++.++
T Consensus       166 ~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~-----~~~~~i~~g~~~~~~~~spdg~~~~va~~~~  228 (432)
T d1qksa2         166 AAILASHYRPEFIVNVKETGKILLVDYTDLNN-----LKTTEISAERFLHDGGLDGSHRYFITAANAR  228 (432)
T ss_dssp             EEEEECSSSSEEEEEETTTTEEEEEETTCSSE-----EEEEEEECCSSEEEEEECTTSCEEEEEEGGG
T ss_pred             eEEEECCCCCEEEEEEccCCeEEEEEccCCCc-----ceEEEEcccCccccceECCCCCEEEEecccc
Confidence            678889987  567778899999999875432     1111123456789999999999988887653

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.74  E-value=2.1e-16  Score=143.74  Aligned_cols=228  Identities=10%  Similarity=0.014  Sum_probs=144.8

Q ss_pred             cceeEeeeeccccEEEEe--ecCCEEEEecCCCcEEEEeCCCc--c-----eeeecCCCCeeEEEEeCCCCEEEE-EeCC
Q 043707          113 NGLIGSIVRKEGHIYSLA--ASGDLLYTGSDSKNIRVWKNLKE--F-----SGFKSNSGLVKAIIITGDSNKIFT-GHQD  182 (347)
Q Consensus       113 ~~~i~~l~~h~~~V~~l~--~~~~~l~tg~~dg~I~vwd~~~~--~-----~~~~~h~~~V~~l~~sp~~~~l~s-~~~D  182 (347)
                      .+++.++..|.. +..++  ++|++|++++.|++|++||....  .     ....+|.+.+.+++|+|||+++++ +..+
T Consensus        52 ~~~~~~l~~g~~-~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~  130 (426)
T d1hzua2          52 KKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWP  130 (426)
T ss_dssp             CSEEEEEECCSS-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEES
T ss_pred             CcEEEEEeCCCC-eeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCC
Confidence            456778877654 55555  57999999999999999996532  1     222356667778888999998754 5588


Q ss_pred             CcEEEEecCCCCCceeeeeccc--------ccc-cceEEeccCCCe----------EEEEeecc----eeeeeecCCCee
Q 043707          183 GKIRIWKVSRKNPSVHKRVGSL--------PTF-KDYVKSSVNPKN----------YVEVRRNR----NVLKIRHYDAVS  239 (347)
Q Consensus       183 g~I~vwd~~~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~----------~~~~~~~~----~~~~~~h~~~V~  239 (347)
                      +.+++||..+............        +.. ...+....+...          ........    ......+...+.
T Consensus       131 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  210 (426)
T d1hzua2         131 PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLA  210 (426)
T ss_dssp             SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEE
T ss_pred             CeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccE
Confidence            9999999998765432221110        011 111122222221          11111111    123345777788


Q ss_pred             EEEEcCCCCEEEEEeC-CCcEEEEeCCCC---------------------------------------------------
Q 043707          240 CLSLNAEQGLLYSGSW-DKTLKVWRISDC---------------------------------------------------  267 (347)
Q Consensus       240 ~l~~~~~~~~l~s~s~-dg~i~vwdl~~~---------------------------------------------------  267 (347)
                      .+.|+|++++++++.. +..+.+++..++                                                   
T Consensus       211 ~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~  290 (426)
T d1hzua2         211 DGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ  290 (426)
T ss_dssp             EEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTT
T ss_pred             eeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccccccc
Confidence            8899998887777654 444666665433                                                   


Q ss_pred             ---EEEEEEecCCCcEEEEEeCCCC-EEEE-------EeCCCcEEEEEcccCCccceeeehh---hhhccCCcEEEEEEc
Q 043707          268 ---KCLESINAHDDAINSVVAGFDS-LVFT-------GSADGTVKVWRRELQGKGTKHFLAQ---VLLKQENAITALAVN  333 (347)
Q Consensus       268 ---~~~~~~~~h~~~v~~i~~~~~~-~l~s-------~~~dg~I~vwd~~~~~~~~~~~~~~---~~~~h~~~V~~l~~~  333 (347)
                         +....+.+|...+..++|+|++ +|++       +..|++|+|||+++........+..   .+..|...|.+++|+
T Consensus       291 ~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fS  370 (426)
T d1hzua2         291 YAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYN  370 (426)
T ss_dssp             TBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEEC
T ss_pred             ccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEEC
Confidence               3444566777888999999998 6663       4568899999998765422222222   233556679999999


Q ss_pred             cCCCEEEE
Q 043707          334 QESAVVYC  341 (347)
Q Consensus       334 p~~~~l~s  341 (347)
                      |||++|+.
T Consensus       371 pDGk~i~v  378 (426)
T d1hzua2         371 KRGDEVWF  378 (426)
T ss_dssp             SSSSEEEE
T ss_pred             CCCCEEEE
Confidence            99987744

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.70  E-value=1.2e-16  Score=145.31  Aligned_cols=183  Identities=10%  Similarity=0.048  Sum_probs=126.3

Q ss_pred             EEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEE
Q 043707          135 LLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVK  212 (347)
Q Consensus       135 ~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~  212 (347)
                      ++++...||+|+|||..  +.+..+..| ..+..++|+|||++|++++.|++|++||+.+++......+...        
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~--------  104 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG--------  104 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC--------
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCC--------
Confidence            56888999999999954  556777776 4699999999999999999999999999998875443332211        


Q ss_pred             eccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEE-eCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC--
Q 043707          213 SSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSG-SWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--  289 (347)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~--  289 (347)
                                         .+|...+.+++|+|||++|+++ ..++++++||..+++++..+..|...+..+.+.+++  
T Consensus       105 -------------------~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (426)
T d1hzua2         105 -------------------IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRV  165 (426)
T ss_dssp             -------------------SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCE
T ss_pred             -------------------CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCce
Confidence                               1355566677889999987555 478999999999999988887766555444444433  


Q ss_pred             EEEEEeCCCcEEEEEcccCCcc------ceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707          290 LVFTGSADGTVKVWRRELQGKG------TKHFLAQVLLKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       290 ~l~s~~~dg~I~vwd~~~~~~~------~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                      ..++.+.|+...+|.....+..      ....+......+...+..++|+|++++++++..+
T Consensus       166 ~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~  227 (426)
T d1hzua2         166 AAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANN  227 (426)
T ss_dssp             EEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETT
T ss_pred             eEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeec
Confidence            3334444444433333211110      0001122334567789999999999998887654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.65  E-value=5.8e-15  Score=128.27  Aligned_cols=202  Identities=10%  Similarity=0.022  Sum_probs=129.5

Q ss_pred             CEEEEecCCCcEEEEeCCC--cceeeec--CCCCeeEEEEeCCCCEE-EEEeCCCcEEEEecCCCCCceeeeeccccc--
Q 043707          134 DLLYTGSDSKNIRVWKNLK--EFSGFKS--NSGLVKAIIITGDSNKI-FTGHQDGKIRIWKVSRKNPSVHKRVGSLPT--  206 (347)
Q Consensus       134 ~~l~tg~~dg~I~vwd~~~--~~~~~~~--h~~~V~~l~~sp~~~~l-~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~--  206 (347)
                      ++|++++.|++|+|||...  .+..+..  +...+.+++|+|||+++ ++++.++.|.+||+.+++............  
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            5899999999999999664  3444543  34568899999999987 466789999999999987544333221100  


Q ss_pred             -ccceEEeccCCCeEE-----------------------EEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 043707          207 -FKDYVKSSVNPKNYV-----------------------EVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVW  262 (347)
Q Consensus       207 -~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vw  262 (347)
                       ...-+....+...++                       +...........+...+..++|++++.++++++.  .+.+|
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~~  159 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR--DLHVM  159 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS--SEEEE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcC--Cccee
Confidence             000111111111111                       1111222233446677889999999999999874  46789


Q ss_pred             eCCCCEEEEEEec------------------------------------------------------------------C
Q 043707          263 RISDCKCLESINA------------------------------------------------------------------H  276 (347)
Q Consensus       263 dl~~~~~~~~~~~------------------------------------------------------------------h  276 (347)
                      |..+++....+..                                                                  +
T Consensus       160 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (337)
T d1pbyb_         160 DPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM  239 (337)
T ss_dssp             ETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC
T ss_pred             eeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCC
Confidence            8877665544321                                                                  2


Q ss_pred             CCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          277 DDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       277 ~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      ...+..+.+++++ +++.+  ++.|++||+.+...      +..+ .+...+.+++|+|||++|++++.||
T Consensus       240 ~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~------~~~~-~~~~~~~~~~~s~dG~~l~v~~~~~  301 (337)
T d1pbyb_         240 DVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNAS------IKRV-PLPHSYYSVNVSTDGSTVWLGGALG  301 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEE------EEEE-ECSSCCCEEEECTTSCEEEEESBSS
T ss_pred             CcceEEEEecccceEEEEc--cccEEEEECCCCcE------EEEE-cCCCCEEEEEECCCCCEEEEEeCCC
Confidence            2233444555555 33333  58999999985532      2222 3456789999999999999999887

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.58  E-value=3e-13  Score=115.41  Aligned_cols=169  Identities=15%  Similarity=0.180  Sum_probs=125.8

Q ss_pred             EEEecCCCcEEEEeCCCc--ceeeecCCCCeeEEEEeCCCCEEE-EEeCCCcEEEEecCCCCCceeeeecccccccceEE
Q 043707          136 LYTGSDSKNIRVWKNLKE--FSGFKSNSGLVKAIIITGDSNKIF-TGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVK  212 (347)
Q Consensus       136 l~tg~~dg~I~vwd~~~~--~~~~~~h~~~V~~l~~sp~~~~l~-s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~  212 (347)
                      +++++.|++|.+||..+.  +..+.. ...+..++|+|+|++|+ ++..++.|++||+.+++......            
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~------------   71 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP------------   71 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE------------
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee------------
Confidence            456788999999996533  444443 35678999999999874 66789999999998875332211            


Q ss_pred             eccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEE-EeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC--
Q 043707          213 SSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYS-GSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--  289 (347)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~--  289 (347)
                                           ....+..++|++++..++. +..++.+.+|+..+++.+..+..+. ...++.++|++  
T Consensus        72 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dg~~  129 (301)
T d1l0qa2          72 ---------------------AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKK  129 (301)
T ss_dssp             ---------------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSE
T ss_pred             ---------------------ccccccccccccccccccccccccceeeecccccceeeeeccccc-cceEEEeecCCCe
Confidence                                 2345678999999886655 5567889999999999998888554 56789999998  


Q ss_pred             EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          290 LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       290 ~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      +++++..++.+.+|+......      ...+ .+...+..++++|+++.+++++.+.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  179 (301)
T d1l0qa2         130 LYVTNNGDKTVSVINTVTKAV------INTV-SVGRSPKGIAVTPDGTKVYVANFDS  179 (301)
T ss_dssp             EEEEETTTTEEEEEETTTTEE------EEEE-ECCSSEEEEEECTTSSEEEEEETTT
T ss_pred             eeeeeccccceeeeeccccce------eeec-ccCCCceEEEeeccccceeeecccc
Confidence            556777899999999975432      2222 2344688999999999888887653

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=2.2e-13  Score=118.16  Aligned_cols=181  Identities=12%  Similarity=0.220  Sum_probs=126.1

Q ss_pred             EEEEecCCCcEEEEeCCC--cceee--ecCCCCeeEEEEeCCCCEEEEEe-CCCcEEEEecCCCCCceeeeecccccccc
Q 043707          135 LLYTGSDSKNIRVWKNLK--EFSGF--KSNSGLVKAIIITGDSNKIFTGH-QDGKIRIWKVSRKNPSVHKRVGSLPTFKD  209 (347)
Q Consensus       135 ~l~tg~~dg~I~vwd~~~--~~~~~--~~h~~~V~~l~~sp~~~~l~s~~-~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~  209 (347)
                      .+++++.|++|++|++..  .+..+  ..|.+.|..|+|+|||++|++++ .|+.|++|++...........        
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~--------   77 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA--------   77 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE--------
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEee--------
Confidence            467888999999999542  23333  36788999999999999986655 589999999987653222110        


Q ss_pred             eEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCCCEEEEE--EecCCCcEEEEEeC
Q 043707          210 YVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRISDCKCLES--INAHDDAINSVVAG  286 (347)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~vwdl~~~~~~~~--~~~h~~~v~~i~~~  286 (347)
                                           ...+...+..++|+|||++|++++. ++.+.+|+.........  ...+...+.++.++
T Consensus        78 ---------------------~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s  136 (333)
T d1ri6a_          78 ---------------------ESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANIS  136 (333)
T ss_dssp             ---------------------EEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEEC
T ss_pred             ---------------------ecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEee
Confidence                                 0124556788999999999999885 67899998877655433  34566678889999


Q ss_pred             CCC-EEEE-EeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707          287 FDS-LVFT-GSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       287 ~~~-~l~s-~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      |++ +++. ...+..|.+|+.........................++|++++..++....
T Consensus       137 ~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~  196 (333)
T d1ri6a_         137 PDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE  196 (333)
T ss_dssp             TTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET
T ss_pred             ecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeecc
Confidence            998 4444 446778999998754432111111122234456789999999988776543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.55  E-value=2e-12  Score=110.24  Aligned_cols=223  Identities=9%  Similarity=0.134  Sum_probs=142.4

Q ss_pred             ceeEeeeeccccEE--EEeecCCEE-EEecCCCcEEEEeCCC--cceeeecCCCCeeEEEEeCCCCEEE-EEeCCCcEEE
Q 043707          114 GLIGSIVRKEGHIY--SLAASGDLL-YTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIITGDSNKIF-TGHQDGKIRI  187 (347)
Q Consensus       114 ~~i~~l~~h~~~V~--~l~~~~~~l-~tg~~dg~I~vwd~~~--~~~~~~~h~~~V~~l~~sp~~~~l~-s~~~Dg~I~v  187 (347)
                      ++++++... +...  ++.++|++| +++..++.|++||...  .+..+..+. .+..++|++++..++ ++..++.+++
T Consensus        23 ~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (301)
T d1l0qa2          23 KVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSV  100 (301)
T ss_dssp             EEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             eEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccccccccccccccccceeee
Confidence            345555433 3344  455678866 5778899999999653  355555554 578999999988655 5557788999


Q ss_pred             EecCCCCCceeeeecc-------cccccceEEeccCCCeEE--EEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCC-C
Q 043707          188 WKVSRKNPSVHKRVGS-------LPTFKDYVKSSVNPKNYV--EVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWD-K  257 (347)
Q Consensus       188 wd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d-g  257 (347)
                      |+..+++.........       .+....++..........  ............+...+.++.+++++..++++..+ +
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (301)
T d1l0qa2         101 IDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSM  180 (301)
T ss_dssp             EETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTT
T ss_pred             cccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeeccccc
Confidence            9998875433222211       112222222222222211  11222233344566778999999999988888765 6


Q ss_pred             cEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEE---eCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEc
Q 043707          258 TLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTG---SADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVN  333 (347)
Q Consensus       258 ~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~---~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~  333 (347)
                      .+.+|+....+....+..+ ..+..+++++++ .++.+   ..++.|++||+.+..      ....+. +...+.+++|+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~------~~~~~~-~~~~~~~va~s  252 (301)
T d1l0qa2         181 SISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK------ITARIP-VGPDPAGIAVT  252 (301)
T ss_dssp             EEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE------EEEEEE-CCSSEEEEEEC
T ss_pred             ccccccccceeeeeccccc-CCcceeeccccccccccccccceeeeeeeeecCCCe------EEEEEc-CCCCEEEEEEe
Confidence            6778888888777777654 456788899887 44333   345789999997543      223332 24568999999


Q ss_pred             cCCCEE-EEecCCC
Q 043707          334 QESAVV-YCGSSDG  346 (347)
Q Consensus       334 p~~~~l-~sgs~DG  346 (347)
                      |||++| ++++.||
T Consensus       253 pdg~~l~va~~~~~  266 (301)
T d1l0qa2         253 PDGKKVYVALSFCN  266 (301)
T ss_dssp             TTSSEEEEEETTTT
T ss_pred             CCCCEEEEEECCCC
Confidence            999987 5666665

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.55  E-value=6.2e-13  Score=120.77  Aligned_cols=222  Identities=8%  Similarity=-0.032  Sum_probs=136.6

Q ss_pred             cceeEeeeeccccEEEEe--ecCCEEEEecCCCcEEEEeCCCc-------ceeeecCCCCeeEEEEeCCCCEE-EEEeCC
Q 043707          113 NGLIGSIVRKEGHIYSLA--ASGDLLYTGSDSKNIRVWKNLKE-------FSGFKSNSGLVKAIIITGDSNKI-FTGHQD  182 (347)
Q Consensus       113 ~~~i~~l~~h~~~V~~l~--~~~~~l~tg~~dg~I~vwd~~~~-------~~~~~~h~~~V~~l~~sp~~~~l-~s~~~D  182 (347)
                      .+++..+..|. .+..+.  ++|++|++++.|++|++||....       +.....|.+.+.+..|+|||++| +++..+
T Consensus        52 ~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~  130 (432)
T d1qksa2          52 YEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWP  130 (432)
T ss_dssp             CCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEET
T ss_pred             CcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCC
Confidence            45677777664 355554  67999999999999999995422       12223455667777788899975 678889


Q ss_pred             CcEEEEecCCCCCceeeeecc-------------------cccccceEEeccCCCeEEEEe--ecc--eeeeeecCCCee
Q 043707          183 GKIRIWKVSRKNPSVHKRVGS-------------------LPTFKDYVKSSVNPKNYVEVR--RNR--NVLKIRHYDAVS  239 (347)
Q Consensus       183 g~I~vwd~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~h~~~V~  239 (347)
                      ++|++||..+++.........                   .+....++........+..+.  ...  ....+.+...+.
T Consensus       131 ~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~  210 (432)
T d1qksa2         131 PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLH  210 (432)
T ss_dssp             TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEE
T ss_pred             CeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccc
Confidence            999999999887543322111                   111111222222222222222  111  223445677889


Q ss_pred             EEEEcCCCCEEEEEeC-CCcEEEEeCCCCEEEEEEec-----CCCcEEEEEeCCCCE-EEEE-eCCCcEEEEEcccCCcc
Q 043707          240 CLSLNAEQGLLYSGSW-DKTLKVWRISDCKCLESINA-----HDDAINSVVAGFDSL-VFTG-SADGTVKVWRRELQGKG  311 (347)
Q Consensus       240 ~l~~~~~~~~l~s~s~-dg~i~vwdl~~~~~~~~~~~-----h~~~v~~i~~~~~~~-l~s~-~~dg~I~vwd~~~~~~~  311 (347)
                      .++|+|+++++++++. ++.+.++|.++++.+..+..     |........+...+. .++. ..++.|.+|+....   
T Consensus       211 ~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~---  287 (432)
T d1qksa2         211 DGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE---  287 (432)
T ss_dssp             EEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT---
T ss_pred             cceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccc---
Confidence            9999999998877765 56799999999988877653     334444555554453 3333 24889999987532   


Q ss_pred             ceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707          312 TKHFLAQVLLKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       312 ~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                             .+..|...|....+.|++..+++++.|
T Consensus       288 -------~~~~~~~~v~~~~~~~~g~~~~~~s~p  314 (432)
T d1qksa2         288 -------GHPDNAWKILDSFPALGGGSLFIKTHP  314 (432)
T ss_dssp             -------TCTTTBTSEEEEEECSCSCCCCEECCT
T ss_pred             -------cccccccEEEEEEEcCCCCeEEEEecC
Confidence                   122344455555555555555555443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.52  E-value=6.2e-13  Score=115.56  Aligned_cols=70  Identities=10%  Similarity=0.111  Sum_probs=55.3

Q ss_pred             EEeecCCEEEEecCCCcEEEEeCCC--cceeee-cCCCCeeEEEEeCCCCEEE-EEeCCCcEEEEecCCCCCce
Q 043707          128 SLAASGDLLYTGSDSKNIRVWKNLK--EFSGFK-SNSGLVKAIIITGDSNKIF-TGHQDGKIRIWKVSRKNPSV  197 (347)
Q Consensus       128 ~l~~~~~~l~tg~~dg~I~vwd~~~--~~~~~~-~h~~~V~~l~~sp~~~~l~-s~~~Dg~I~vwd~~~~~~~~  197 (347)
                      +++.++++|++++.+++|.+||..+  .+..++ .|...+.+++|+|||++++ ++..++.|++||+.+++...
T Consensus         3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~   76 (346)
T d1jmxb_           3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF   76 (346)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             cCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeee
Confidence            3456788999999999999999663  345555 3556788999999999874 55678999999999876543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=7.1e-11  Score=101.89  Aligned_cols=222  Identities=10%  Similarity=0.166  Sum_probs=133.4

Q ss_pred             eccccEEEEe--ecCCEEE-EecCCCcEEEEeCCCc--ce---eeecCCCCeeEEEEeCCCCEEEEEeC-CCcEEEEecC
Q 043707          121 RKEGHIYSLA--ASGDLLY-TGSDSKNIRVWKNLKE--FS---GFKSNSGLVKAIIITGDSNKIFTGHQ-DGKIRIWKVS  191 (347)
Q Consensus       121 ~h~~~V~~l~--~~~~~l~-tg~~dg~I~vwd~~~~--~~---~~~~h~~~V~~l~~sp~~~~l~s~~~-Dg~I~vwd~~  191 (347)
                      .|.+.+..++  ++|++|+ ++..|+.|++|++...  ..   ....+...+..++|+|+|++|++++. ++.|++|+..
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~  113 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE  113 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccc
Confidence            5777776655  5788775 4556899999985422  21   22334556788999999999998885 6789999887


Q ss_pred             CCCCceeeeeccc----------ccccceEEeccCCCeEEEEe--ecce-------eeeeecCCCeeEEEEcCCCCEEEE
Q 043707          192 RKNPSVHKRVGSL----------PTFKDYVKSSVNPKNYVEVR--RNRN-------VLKIRHYDAVSCLSLNAEQGLLYS  252 (347)
Q Consensus       192 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~--~~~~-------~~~~~h~~~V~~l~~~~~~~~l~s  252 (347)
                      .............          +.....+........+....  ....       ............++|++++..++.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~  193 (333)
T d1ri6a_         114 DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYC  193 (333)
T ss_dssp             TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEE
T ss_pred             cccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEe
Confidence            6653332222111          11122222222222111111  1111       112234456788999999888776


Q ss_pred             Ee-CCCcEEEEeCCCC----EEEEEEe------cCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhh
Q 043707          253 GS-WDKTLKVWRISDC----KCLESIN------AHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQV  319 (347)
Q Consensus       253 ~s-~dg~i~vwdl~~~----~~~~~~~------~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~  319 (347)
                      .. ..+...+|+....    .....+.      ........+++++++  +++++..++.+.+|++......   .....
T Consensus       194 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  270 (333)
T d1ri6a_         194 VNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV---LSKEG  270 (333)
T ss_dssp             EETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC---EEEEE
T ss_pred             eccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCE---EEEEE
Confidence            65 4567888886432    2223332      123456678889987  5566778899999998754431   11111


Q ss_pred             hhccCCcEEEEEEccCCCEEEEecCC
Q 043707          320 LLKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       320 ~~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                      .......+.+++|+|||++|++++.|
T Consensus       271 ~~~~~~~p~~~a~spDGk~l~va~~~  296 (333)
T d1ri6a_         271 FQPTETQPRGFNVDHSGKYLIAAGQK  296 (333)
T ss_dssp             EEECSSSCCCEEECTTSSEEEEECTT
T ss_pred             EeCCCCCeeEEEEeCCCCEEEEEECC
Confidence            22334567899999999998887654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.41  E-value=1.5e-11  Score=106.65  Aligned_cols=75  Identities=11%  Similarity=0.058  Sum_probs=63.0

Q ss_pred             ecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCC
Q 043707          233 RHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQG  309 (347)
Q Consensus       233 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~  309 (347)
                      .|...+..+.+++++.+++... ++.|.+||+.+++.+..+. +...+.+++|+||+ +|++++.|+.|+|||+++.+
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~  324 (346)
T d1jmxb_         249 DLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE  324 (346)
T ss_dssp             ECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred             cccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCC
Confidence            4666778888888877777666 4679999999999998886 45578999999998 88999999999999998654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.41  E-value=9.9e-11  Score=103.01  Aligned_cols=80  Identities=10%  Similarity=0.038  Sum_probs=63.2

Q ss_pred             EEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC---EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCC
Q 043707          249 LLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS---LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQEN  325 (347)
Q Consensus       249 ~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~---~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~  325 (347)
                      .++....++.+.+||+.+++.+..+. +...+..++|+|||   ++++++.|+.|+|||+.+++      .+..+..+..
T Consensus       290 ~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~------~~~~~~~~g~  362 (373)
T d2madh_         290 AWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD------QDQSTVELGS  362 (373)
T ss_pred             eEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC------EEEEECCCCC
Confidence            34456667889999999999998886 56678999999997   45688999999999998654      4667777777


Q ss_pred             cEEEEEEccC
Q 043707          326 AITALAVNQE  335 (347)
Q Consensus       326 ~V~~l~~~p~  335 (347)
                      ..+.|++.++
T Consensus       363 ~P~~l~~~~~  372 (373)
T d2madh_         363 GPQVLSVMNE  372 (373)
T ss_pred             CCcEEEEecC
Confidence            7777777554

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.38  E-value=1.4e-12  Score=112.76  Aligned_cols=135  Identities=11%  Similarity=0.079  Sum_probs=101.0

Q ss_pred             CEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEE-E
Q 043707          174 NKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLY-S  252 (347)
Q Consensus       174 ~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s  252 (347)
                      ++|++++.|++|+|||+.+.+........                              .+...+..++|+|||++|+ +
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~------------------------------~~~~~~~~i~~spDg~~l~v~   51 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIA------------------------------DAGPTPMVPMVAPGGRIAYAT   51 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECT------------------------------TCTTCCCCEEECTTSSEEEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECC------------------------------CCCCCccEEEECCCCCEEEEE
Confidence            48999999999999999987644333222                              1445678899999999875 5


Q ss_pred             EeCCCcEEEEeCCCCEEEEEEecCCC-----cEEEEEeCCCC-EEEEEe------------CCCcEEEEEcccCCcccee
Q 043707          253 GSWDKTLKVWRISDCKCLESINAHDD-----AINSVVAGFDS-LVFTGS------------ADGTVKVWRRELQGKGTKH  314 (347)
Q Consensus       253 ~s~dg~i~vwdl~~~~~~~~~~~h~~-----~v~~i~~~~~~-~l~s~~------------~dg~I~vwd~~~~~~~~~~  314 (347)
                      ++.++.|.+||+.+++.+..+..+..     .+..++++|++ +++++.            .+..+.+||.....     
T Consensus        52 ~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----  126 (337)
T d1pbyb_          52 VNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-----  126 (337)
T ss_dssp             ETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-----
T ss_pred             ECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCe-----
Confidence            67799999999999999998876543     34578899997 665554            46788888887443     


Q ss_pred             eehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707          315 FLAQVLLKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       315 ~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                       ....+. +...+..++|+|+|+++++++.|
T Consensus       127 -~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~  155 (337)
T d1pbyb_         127 -RRKAFE-APRQITMLAWARDGSKLYGLGRD  155 (337)
T ss_dssp             -EEEEEE-CCSSCCCEEECTTSSCEEEESSS
T ss_pred             -EEEecc-ccCCceEEEEcCCCCEEEEEcCC
Confidence             222222 34567889999999999998765

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.28  E-value=3.7e-10  Score=98.37  Aligned_cols=216  Identities=11%  Similarity=0.026  Sum_probs=128.0

Q ss_pred             cceeEeeeeccccEEEEeecCCEEEEe----------cCCCcEEEEeCCC--cceeeecC-------CCCeeEEEEeCCC
Q 043707          113 NGLIGSIVRKEGHIYSLAASGDLLYTG----------SDSKNIRVWKNLK--EFSGFKSN-------SGLVKAIIITGDS  173 (347)
Q Consensus       113 ~~~i~~l~~h~~~V~~l~~~~~~l~tg----------~~dg~I~vwd~~~--~~~~~~~h-------~~~V~~l~~sp~~  173 (347)
                      .+++.++..+...-.+++++|++|++.          ..|+.|++||...  ....+..+       ......++|+|++
T Consensus        38 g~~~~~~~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg  117 (355)
T d2bbkh_          38 GRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG  117 (355)
T ss_dssp             TEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS
T ss_pred             CcEEEEEECCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCC
Confidence            346777777766666788899977754          4578999999653  23333222       2234568999999


Q ss_pred             CEEEEEe--CCCcEEEEecCCCCCceeeeeccc---------------ccccceEEe-----------------------
Q 043707          174 NKIFTGH--QDGKIRIWKVSRKNPSVHKRVGSL---------------PTFKDYVKS-----------------------  213 (347)
Q Consensus       174 ~~l~s~~--~Dg~I~vwd~~~~~~~~~~~~~~~---------------~~~~~~~~~-----------------------  213 (347)
                      ++++.+.  .+..+.+|+..+++..........               +....++..                       
T Consensus       118 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  197 (355)
T d2bbkh_         118 KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLI  197 (355)
T ss_dssp             SEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBC
T ss_pred             CeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceeccee
Confidence            9887765  567899999988764322211100               000000000                       


Q ss_pred             -----ccCCCeEEEEeecceeeee--------------e----------cCCCeeEEEEcCCCCEEEEEeCC--------
Q 043707          214 -----SVNPKNYVEVRRNRNVLKI--------------R----------HYDAVSCLSLNAEQGLLYSGSWD--------  256 (347)
Q Consensus       214 -----~~~~~~~~~~~~~~~~~~~--------------~----------h~~~V~~l~~~~~~~~l~s~s~d--------  256 (347)
                           ......++...........              .          .......+++++++..++....+        
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  277 (355)
T d2bbkh_         198 NHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKT  277 (355)
T ss_dssp             SCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTS
T ss_pred             eeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecC
Confidence                 0011111111111110000              0          01123457888888877766543        


Q ss_pred             --CcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC---EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEE
Q 043707          257 --KTLKVWRISDCKCLESINAHDDAINSVVAGFDS---LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALA  331 (347)
Q Consensus       257 --g~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~---~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~  331 (347)
                        ..|.+||+.+++.+..+.. ...+.+++|+||+   ++++++.|+.|+|||+++++      .+..+..+......|.
T Consensus       278 ~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~------~~~~i~~~G~~p~~i~  350 (355)
T d2bbkh_         278 ASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE------ELRSVNQLGHGPQVIT  350 (355)
T ss_dssp             CEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC------EEEEECCCCSSCCEEE
T ss_pred             CCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCC------EEEEEeCcCCCccEEE
Confidence              3689999999998888864 4568899999997   45667789999999998654      3455555544445555


Q ss_pred             EccC
Q 043707          332 VNQE  335 (347)
Q Consensus       332 ~~p~  335 (347)
                      +.++
T Consensus       351 ~~d~  354 (355)
T d2bbkh_         351 TADM  354 (355)
T ss_dssp             CCCC
T ss_pred             eCCC
Confidence            4443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.28  E-value=7.3e-10  Score=97.26  Aligned_cols=178  Identities=8%  Similarity=-0.021  Sum_probs=111.2

Q ss_pred             EeecCCEEEEe-----cCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEe----------CCCcEEEEecC
Q 043707          129 LAASGDLLYTG-----SDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGH----------QDGKIRIWKVS  191 (347)
Q Consensus       129 l~~~~~~l~tg-----~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~----------~Dg~I~vwd~~  191 (347)
                      +.++|+.++..     +.++.|.+||..  +.+..+..+.  ...++|+|||++|+++.          .++.|.+||..
T Consensus        28 ~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~--~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~  105 (373)
T d2madh_          28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF--LPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV  105 (373)
T ss_pred             cCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCC--CccEEEcCCCCEEEEEeecCCcccccccceEEEEEECC
Confidence            34566665543     334578888843  4455555544  33799999999998875          45789999999


Q ss_pred             CCCCceeeeeccc---------------ccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCE-EEEEeC
Q 043707          192 RKNPSVHKRVGSL---------------PTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGL-LYSGSW  255 (347)
Q Consensus       192 ~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~  255 (347)
                      +++..........               +.....+.........+.+..........+.....++.+++++.. +++.+.
T Consensus       106 t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~  185 (373)
T d2madh_         106 TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCA  185 (373)
T ss_pred             CCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcC
Confidence            8875433322211               111111122222222222222222233455566788999998765 467888


Q ss_pred             CCcEEEEeCCCCEEEEEEecCC------CcEEEEEeCCCCEEEEEeCCCcEEEEEcccC
Q 043707          256 DKTLKVWRISDCKCLESINAHD------DAINSVVAGFDSLVFTGSADGTVKVWRRELQ  308 (347)
Q Consensus       256 dg~i~vwdl~~~~~~~~~~~h~------~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~  308 (347)
                      |+++.+|+...++.......+.      .....+.+.+++.++..+.++.+.+|+....
T Consensus       186 dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  244 (373)
T d2madh_         186 QGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAA  244 (373)
T ss_pred             CCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCC
Confidence            9999999999888776654322      2234456677777788889999999998754

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.12  E-value=1.3e-09  Score=94.88  Aligned_cols=123  Identities=10%  Similarity=0.059  Sum_probs=83.8

Q ss_pred             EEeecCCEEEEe-----cCCCcEEEEeCCCc--ceeeecCCCCeeEEEEeCCCCEEEEE----------eCCCcEEEEec
Q 043707          128 SLAASGDLLYTG-----SDSKNIRVWKNLKE--FSGFKSNSGLVKAIIITGDSNKIFTG----------HQDGKIRIWKV  190 (347)
Q Consensus       128 ~l~~~~~~l~tg-----~~dg~I~vwd~~~~--~~~~~~h~~~V~~l~~sp~~~~l~s~----------~~Dg~I~vwd~  190 (347)
                      +.+++++.++..     ..+..|.+||....  +..+..+  .+..++|+|||++|++.          ..|+.|++||+
T Consensus         8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g--~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~   85 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP   85 (355)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC--SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECC--CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEEC
Confidence            345677766554     34567999996543  4455444  44579999999988765          34789999999


Q ss_pred             CCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEe--CCCcEEEEeCCCCE
Q 043707          191 SRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGS--WDKTLKVWRISDCK  268 (347)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s--~dg~i~vwdl~~~~  268 (347)
                      .+++..........+.                         .........++|+++++.++.+.  .+..+.+|+..+++
T Consensus        86 ~t~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~  140 (355)
T d2bbkh_          86 VTLLPTADIELPDAPR-------------------------FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA  140 (355)
T ss_dssp             TTCCEEEEEEETTCCC-------------------------CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred             CCCCEEEEEecCCcce-------------------------eecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCc
Confidence            9887544333221110                         01223445689999999888775  46789999999999


Q ss_pred             EEEEEecCC
Q 043707          269 CLESINAHD  277 (347)
Q Consensus       269 ~~~~~~~h~  277 (347)
                      .+..+..+.
T Consensus       141 ~~~~~~~~~  149 (355)
T d2bbkh_         141 FKRMLDVPD  149 (355)
T ss_dssp             EEEEEECCS
T ss_pred             EeeEEecCC
Confidence            998887554

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.07  E-value=4.8e-09  Score=92.19  Aligned_cols=197  Identities=8%  Similarity=-0.022  Sum_probs=119.9

Q ss_pred             ccceeEeeeeccccEEEEeecCCEEEEec----------CCCcEEEEeCCC--cceeeecCC-------CCeeEEEEeCC
Q 043707          112 CNGLIGSIVRKEGHIYSLAASGDLLYTGS----------DSKNIRVWKNLK--EFSGFKSNS-------GLVKAIIITGD  172 (347)
Q Consensus       112 ~~~~i~~l~~h~~~V~~l~~~~~~l~tg~----------~dg~I~vwd~~~--~~~~~~~h~-------~~V~~l~~sp~  172 (347)
                      ..+++..+..+......+.++|+.|++.+          .|+.|++||...  ....+..+.       .....++|+||
T Consensus        55 ~~~~~~~~~~~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpD  134 (368)
T d1mdah_          55 CGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS  134 (368)
T ss_dssp             TTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTT
T ss_pred             CCcEEEEEeCCCCCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCC
Confidence            34566777777777778888998777643          477899999653  333333322       22456899999


Q ss_pred             CCEEEEEe-CCCcEEEEecCCCCCceeeeecccc----ccc-ceEEeccCC-----------------------------
Q 043707          173 SNKIFTGH-QDGKIRIWKVSRKNPSVHKRVGSLP----TFK-DYVKSSVNP-----------------------------  217 (347)
Q Consensus       173 ~~~l~s~~-~Dg~I~vwd~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~-----------------------------  217 (347)
                      |++|+++. .++.|.+||+.+++...........    ... .++..+.++                             
T Consensus       135 Gk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (368)
T d1mdah_         135 SACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSS  214 (368)
T ss_dssp             SSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCS
T ss_pred             CCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccce
Confidence            99998876 5799999999887643332221100    000 000000000                             


Q ss_pred             -----------------CeEEEEeecceeeeee--------------cCCCeeEEEEcCCCCEEEEEeCC---------C
Q 043707          218 -----------------KNYVEVRRNRNVLKIR--------------HYDAVSCLSLNAEQGLLYSGSWD---------K  257 (347)
Q Consensus       218 -----------------~~~~~~~~~~~~~~~~--------------h~~~V~~l~~~~~~~~l~s~s~d---------g  257 (347)
                                       ..++............              .......+++++++..++....+         .
T Consensus       215 ~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~  294 (368)
T d1mdah_         215 QAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAE  294 (368)
T ss_dssp             CCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEE
T ss_pred             eecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCc
Confidence                             0000000111100000              01123457888888877665332         3


Q ss_pred             cEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC---EEEEEeCCCcEEEEEcccCC
Q 043707          258 TLKVWRISDCKCLESINAHDDAINSVVAGFDS---LVFTGSADGTVKVWRRELQG  309 (347)
Q Consensus       258 ~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~---~l~s~~~dg~I~vwd~~~~~  309 (347)
                      .|.+||..+++.+..+.. ...+..++|+||+   +++++..|+.|+|||..+++
T Consensus       295 ~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk  348 (368)
T d1mdah_         295 NTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             EEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             eEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence            589999999998888763 4568899999997   35577789999999998654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.05  E-value=6.5e-10  Score=101.28  Aligned_cols=151  Identities=8%  Similarity=-0.014  Sum_probs=105.0

Q ss_pred             eEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEc
Q 043707          165 KAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLN  244 (347)
Q Consensus       165 ~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~  244 (347)
                      ..+.|.++++++..  .|+.|.+||+.+++.........+                           ..|...|.++.|+
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~---------------------------~~~~~~i~~~~~S   70 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTF---------------------------DEFGHSINDYSIS   70 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTT---------------------------TTSSSCCCEEEEC
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhh---------------------------hhccCccceeEEC
Confidence            45789999877664  578899999999874322211111                           1366789999999


Q ss_pred             CCCCEEEEEeC---------CCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCcccee
Q 043707          245 AEQGLLYSGSW---------DKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKH  314 (347)
Q Consensus       245 ~~~~~l~s~s~---------dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~  314 (347)
                      ||+++|+.++.         ++.+.|||+.+++. ..+..+...+..+.|+||| .||. ..++.+.+|+...+......
T Consensus        71 pDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~-~~~~~l~~~~~~~g~~~~~t  148 (470)
T d2bgra1          71 PDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAY-VWNNDIYVKIEPNLPSYRIT  148 (470)
T ss_dssp             TTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEE-EETTEEEEESSTTSCCEECC
T ss_pred             CCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeE-eecccceEEECCCCceeeee
Confidence            99999998753         56789999998874 5577888899999999999 5555 46788999998754320000


Q ss_pred             ---eehh---------hhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          315 ---FLAQ---------VLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       315 ---~~~~---------~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                         ..-.         ...........+.|+|||++|+....|.
T Consensus       149 ~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~  192 (470)
T d2bgra1         149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFND  192 (470)
T ss_dssp             SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEEC
T ss_pred             eccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecC
Confidence               0000         0011233456788999999999987654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.94  E-value=3e-07  Score=78.30  Aligned_cols=186  Identities=11%  Similarity=0.058  Sum_probs=129.9

Q ss_pred             EEeecCCEEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccc
Q 043707          128 SLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTF  207 (347)
Q Consensus       128 ~l~~~~~~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~  207 (347)
                      ++.++|+++++...+++|+.|+.......+....+.+.+++|.++|+++++...++.+.+|+.............     
T Consensus        34 Av~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~-----  108 (302)
T d2p4oa1          34 ASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLT-----  108 (302)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEE-----
T ss_pred             EECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccc-----
Confidence            566789999999999999999977667777777789999999999999999888899988887654322211110     


Q ss_pred             cceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEec----------CC
Q 043707          208 KDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA----------HD  277 (347)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~----------h~  277 (347)
                                              .........+++.++++++++.+.++.+..+|...+........          ..
T Consensus       109 ------------------------~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (302)
T d2p4oa1         109 ------------------------LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF  164 (302)
T ss_dssp             ------------------------CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS
T ss_pred             ------------------------cCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcc
Confidence                                    01345578899999999988888899999999887754332221          11


Q ss_pred             CcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          278 DAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       278 ~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      .....+.+..+.++++....+.|..++........    .............|++.++|++.++...++
T Consensus       165 ~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~pdgia~d~dG~l~va~~~~~  229 (302)
T d2p4oa1         165 PAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPG----EPEIFVEQTNIDDFAFDVEGNLYGATHIYN  229 (302)
T ss_dssp             CSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBC----CCEEEEESCCCSSEEEBTTCCEEEECBTTC
T ss_pred             cccccccccCCceeeecCCCCeEEecccccccccc----ccccccCCCCCcceEECCCCCEEEEEcCCC
Confidence            24566777655577788889999988886443211    111112233456789999988766655443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.88  E-value=9.4e-09  Score=90.26  Aligned_cols=175  Identities=9%  Similarity=-0.059  Sum_probs=109.0

Q ss_pred             ecCCCc--EEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEe----------CCCcEEEEecCCCCCceeeeeccc
Q 043707          139 GSDSKN--IRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGH----------QDGKIRIWKVSRKNPSVHKRVGSL  204 (347)
Q Consensus       139 g~~dg~--I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~----------~Dg~I~vwd~~~~~~~~~~~~~~~  204 (347)
                      ...+|.  |.+||..  +.+.....+...  .++|+|+|+.|++.+          .|+.|++||..+.+..........
T Consensus        40 ~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~  117 (368)
T d1mdah_          40 AYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA  117 (368)
T ss_dssp             TTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS
T ss_pred             ccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCcc
Confidence            444555  5555743  334455555433  689999999888764          477899999998875443332211


Q ss_pred             ccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEe-CCCcEEEEeCCCCEEEEEEecCCCcEEEE
Q 043707          205 PTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDCKCLESINAHDDAINSV  283 (347)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~vwdl~~~~~~~~~~~h~~~v~~i  283 (347)
                      ...                         ........++|+|||++|+++. .++.+.+||+.+++.+..+..+....  +
T Consensus       118 ~~~-------------------------~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~  170 (368)
T d1mdah_         118 PRF-------------------------SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH--I  170 (368)
T ss_dssp             CSC-------------------------CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC--C
T ss_pred             cee-------------------------cccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce--E
Confidence            000                         0122234689999999988876 47999999999999999887665432  1


Q ss_pred             EeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEe
Q 043707          284 VAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCG  342 (347)
Q Consensus       284 ~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sg  342 (347)
                      .......+++.+.||.+.+|++.................+...+..+.+.+++..+.+.
T Consensus       171 ~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  229 (368)
T d1mdah_         171 HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV  229 (368)
T ss_dssp             EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB
T ss_pred             ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec
Confidence            11223477778889999999887554422222222333344445556666666555443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.83  E-value=6.9e-09  Score=94.31  Aligned_cols=138  Identities=11%  Similarity=0.057  Sum_probs=95.8

Q ss_pred             cCCEEEEecCCCcEEEEeCCCcc--e-----eeecCCCCeeEEEEeCCCCEEEEEeC---------CCcEEEEecCCCCC
Q 043707          132 SGDLLYTGSDSKNIRVWKNLKEF--S-----GFKSNSGLVKAIIITGDSNKIFTGHQ---------DGKIRIWKVSRKNP  195 (347)
Q Consensus       132 ~~~~l~tg~~dg~I~vwd~~~~~--~-----~~~~h~~~V~~l~~sp~~~~l~s~~~---------Dg~I~vwd~~~~~~  195 (347)
                      ++++++.  .|+.|.+||.....  .     .+..|...|.++.|+|||++|+.++.         ++.+.|||+.+++.
T Consensus        27 d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~  104 (470)
T d2bgra1          27 DHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL  104 (470)
T ss_dssp             SSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred             CCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc
Confidence            3445543  36789999955332  2     34456678999999999999998853         56788999988753


Q ss_pred             ceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEec
Q 043707          196 SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA  275 (347)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~  275 (347)
                      ....                                 .+...+..+.|+|||+.|+... ++.+++|++.+++.......
T Consensus       105 ~~l~---------------------------------~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~  150 (470)
T d2bgra1         105 ITEE---------------------------------RIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWT  150 (470)
T ss_dssp             CCSS---------------------------------CCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSC
T ss_pred             cccc---------------------------------cCCccccccccccCcceeeEee-cccceEEECCCCceeeeeec
Confidence            2111                                 3778899999999999999865 77899999998876544322


Q ss_pred             C------------------CCcEEEEEeCCCC-EEEEEeCC-CcEEEEEc
Q 043707          276 H------------------DDAINSVVAGFDS-LVFTGSAD-GTVKVWRR  305 (347)
Q Consensus       276 h------------------~~~v~~i~~~~~~-~l~s~~~d-g~I~vwd~  305 (347)
                      +                  .+....+.|+||| .|+....| ..+..|.+
T Consensus       151 ~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         151 GKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             CBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred             cCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEE
Confidence            1                  1234567899998 66665544 33544443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.65  E-value=3.4e-07  Score=81.37  Aligned_cols=222  Identities=13%  Similarity=0.002  Sum_probs=126.1

Q ss_pred             ccccEEEE--eecCCEEEEe-cCCCcEEEEeCCCc--ceeee-cCCCCeeEEEEeCCCC--EEEEEeCCC----------
Q 043707          122 KEGHIYSL--AASGDLLYTG-SDSKNIRVWKNLKE--FSGFK-SNSGLVKAIIITGDSN--KIFTGHQDG----------  183 (347)
Q Consensus       122 h~~~V~~l--~~~~~~l~tg-~~dg~I~vwd~~~~--~~~~~-~h~~~V~~l~~sp~~~--~l~s~~~Dg----------  183 (347)
                      |..+....  .++|++|+.. ..+.+|.++|....  .+.+. .+...+..++|+|+++  +++..+.+.          
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~  149 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDF  149 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCC
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccc
Confidence            44445444  4789877554 67789999996643  33333 3567899999999887  444444332          


Q ss_pred             -------cEEEEecCCCCCceeeeeccc-------ccccceEEeccCCC-------------------------------
Q 043707          184 -------KIRIWKVSRKNPSVHKRVGSL-------PTFKDYVKSSVNPK-------------------------------  218 (347)
Q Consensus       184 -------~I~vwd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-------------------------------  218 (347)
                             .+..+|..+.+......+...       +.....+..+.+..                               
T Consensus       150 ~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dG  229 (441)
T d1qnia2         150 SLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAG  229 (441)
T ss_dssp             CGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTT
T ss_pred             ccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCC
Confidence                   234467666554333222221       22222222221111                               


Q ss_pred             ----------eEEEEeec-ceeeeeecCCCeeEEEEcCCCCEEEE-EeCCCcEEEEeCCCCEEE--------EEEecC--
Q 043707          219 ----------NYVEVRRN-RNVLKIRHYDAVSCLSLNAEQGLLYS-GSWDKTLKVWRISDCKCL--------ESINAH--  276 (347)
Q Consensus       219 ----------~~~~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~dg~i~vwdl~~~~~~--------~~~~~h--  276 (347)
                                ..+..... .....+.-......+.++|||+++++ +..++++.|||+++.+..        ..+.++  
T Consensus       230 k~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~  309 (441)
T d1qnia2         230 NFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPE  309 (441)
T ss_dssp             CCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCB
T ss_pred             CEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecc
Confidence                      11111111 11112222334567899999998765 566999999998653210        111111  


Q ss_pred             -CCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCC-----cc----ceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          277 -DDAINSVVAGFDS-LVFTGSADGTVKVWRRELQG-----KG----TKHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       277 -~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~-----~~----~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                       .-......|.+++ .+.+...|.+|..|++....     ..    .....++...+|...+.+.+++|||++|++++
T Consensus       310 ~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         310 LGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred             cccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence             1123445788888 44566789999999985211     10    01112233367888888889999999999993

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.63  E-value=5.9e-07  Score=79.82  Aligned_cols=185  Identities=9%  Similarity=0.014  Sum_probs=103.2

Q ss_pred             CCCCeeEEEEeCCCCEEEEEe-CCCcEEEEecCCCCCceeeeecc---------cccccc-eEEeccCCC----------
Q 043707          160 NSGLVKAIIITGDSNKIFTGH-QDGKIRIWKVSRKNPSVHKRVGS---------LPTFKD-YVKSSVNPK----------  218 (347)
Q Consensus       160 h~~~V~~l~~sp~~~~l~s~~-~Dg~I~vwd~~~~~~~~~~~~~~---------~~~~~~-~~~~~~~~~----------  218 (347)
                      |...+......|||++|+... .+..|.++|+++.+......+..         .+.... ++.......          
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~  149 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDF  149 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCC
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccc
Confidence            344455566688999886664 77899999999876543332211         111111 111110000          


Q ss_pred             ----e--E---EEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCC---------------------------------
Q 043707          219 ----N--Y---VEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWD---------------------------------  256 (347)
Q Consensus       219 ----~--~---~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d---------------------------------  256 (347)
                          .  .   ++.........+........+.++|+|+++++.+.+                                 
T Consensus       150 ~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dG  229 (441)
T d1qnia2         150 SLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAG  229 (441)
T ss_dssp             CGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTT
T ss_pred             ccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCC
Confidence                0  0   111111111112233457789999999999888753                                 


Q ss_pred             --------CcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCcc--ceeeehhhhhcc-
Q 043707          257 --------KTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKG--TKHFLAQVLLKQ-  323 (347)
Q Consensus       257 --------g~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~--~~~~~~~~~~~h-  323 (347)
                              +.+.|++....+.+..+..... ...+.++|||  +++++..+++|.|||++...+.  ........+.++ 
T Consensus       230 k~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~  308 (441)
T d1qnia2         230 NFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEP  308 (441)
T ss_dssp             CCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECC
T ss_pred             CEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeec
Confidence                    3445555555556666766554 4678999998  4556778999999999742210  000011111111 


Q ss_pred             --CCcEEEEEEccCCCEEEEecCC
Q 043707          324 --ENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       324 --~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                        .-.....+|.++|..+.+...|
T Consensus       309 ~~glgplh~~fd~~g~~yts~~~d  332 (441)
T d1qnia2         309 ELGLGPLHTTFDGRGNAYTTLFID  332 (441)
T ss_dssp             BCCSCEEEEEECSSSEEEEEETTT
T ss_pred             ccccCcccceecCCceEEEccccc
Confidence              1134557899998877777665

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.56  E-value=2.1e-06  Score=75.01  Aligned_cols=157  Identities=8%  Similarity=0.041  Sum_probs=94.1

Q ss_pred             CCeeEEEEeCCCCEEEEEeC-CCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeE
Q 043707          162 GLVKAIIITGDSNKIFTGHQ-DGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSC  240 (347)
Q Consensus       162 ~~V~~l~~sp~~~~l~s~~~-Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  240 (347)
                      ..+.++.|+|+|++++++.. ...|.+|+............                           ..........+.
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~---------------------------~~~~~~g~gPr~  197 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGS---------------------------VDAPDPGDHPRW  197 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEE---------------------------EECSSTTCCEEE
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccc---------------------------eeecCCCCceEE
Confidence            34789999999998888764 45788887654322111100                           000113456788


Q ss_pred             EEEcCCCCEEEEEeC-CCcEEEEeCCCCEE--EEE---Ee--------------cCCCcEEEEEeCCCC-EEEEEe-CCC
Q 043707          241 LSLNAEQGLLYSGSW-DKTLKVWRISDCKC--LES---IN--------------AHDDAINSVVAGFDS-LVFTGS-ADG  298 (347)
Q Consensus       241 l~~~~~~~~l~s~s~-dg~i~vwdl~~~~~--~~~---~~--------------~h~~~v~~i~~~~~~-~l~s~~-~dg  298 (347)
                      ++|+|+++++++..+ +++|.+|++...+.  +..   +.              .+......+.++|++ +|+++. .+.
T Consensus       198 i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~  277 (365)
T d1jofa_         198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK  277 (365)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred             EEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCC
Confidence            999999998877664 78999999865532  222   11              111235678899998 555543 222


Q ss_pred             -----cEEEEEcccCCccceeeehhhhhccCCcEEEEEEcc-CCCEEEEecCC
Q 043707          299 -----TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQ-ESAVVYCGSSD  345 (347)
Q Consensus       299 -----~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~sgs~D  345 (347)
                           .|..|++...+...................+++++| +|++|+++..+
T Consensus       278 ~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~  330 (365)
T d1jofa_         278 FELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ  330 (365)
T ss_dssp             TTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS
T ss_pred             CccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCC
Confidence                 377777654332111111122222344567899998 78988887643

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.47  E-value=1.1e-05  Score=68.18  Aligned_cols=202  Identities=16%  Similarity=0.120  Sum_probs=119.1

Q ss_pred             EeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCC---cceeee--cCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707          117 GSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK---EFSGFK--SNSGLVKAIIITGDSNKIFTGHQDGKIRIWK  189 (347)
Q Consensus       117 ~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~---~~~~~~--~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd  189 (347)
                      ..+....+.+.++++  +|+++++...++.+.+|+...   ....+.  ........+++.++++++++-+.++.+..+|
T Consensus        61 ~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~  140 (302)
T d2p4oa1          61 QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLID  140 (302)
T ss_dssp             EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeee
Confidence            334444555666654  678888888888888886322   122221  2345688999999998888888888888888


Q ss_pred             cCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEE
Q 043707          190 VSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC  269 (347)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~  269 (347)
                      ...+............                      .............+.+.. +.++++.+..+.|..++......
T Consensus       141 ~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~  197 (302)
T d2p4oa1         141 VVQPSGSIWLEHPMLA----------------------RSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDK  197 (302)
T ss_dssp             TTTTEEEEEEECGGGS----------------------CSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSC
T ss_pred             ccCCcceeEecCCccc----------------------eeeccCcccccccccccC-CceeeecCCCCeEEecccccccc
Confidence            7765321111100000                      000001223345566654 34556666788888888765432


Q ss_pred             EE--EEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEE---ccCCCEEEEec
Q 043707          270 LE--SINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAV---NQESAVVYCGS  343 (347)
Q Consensus       270 ~~--~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~---~p~~~~l~sgs  343 (347)
                      ..  ...........+++.++| ++++...+++|..++...+.     ..+......-...++++|   .+|++.|+.++
T Consensus       198 ~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~-----~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt  272 (302)
T d2p4oa1         198 PGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRST-----TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT  272 (302)
T ss_dssp             BCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCE-----EEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred             ccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCE-----EEEEecCCCCCCceEEEEcCCCCCCCEEEEEC
Confidence            21  111123345678999998 55556678889888765211     122223334456899999   67888888776


Q ss_pred             CCC
Q 043707          344 SDG  346 (347)
Q Consensus       344 ~DG  346 (347)
                      ..|
T Consensus       273 ~~g  275 (302)
T d2p4oa1         273 NGG  275 (302)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.47  E-value=1.7e-05  Score=65.50  Aligned_cols=178  Identities=7%  Similarity=0.025  Sum_probs=112.6

Q ss_pred             EEeecCCEEEEecCCCcEEEEeCCCcceeeec-CCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeeccccc
Q 043707          128 SLAASGDLLYTGSDSKNIRVWKNLKEFSGFKS-NSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPT  206 (347)
Q Consensus       128 ~l~~~~~~l~tg~~dg~I~vwd~~~~~~~~~~-h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~  206 (347)
                      ++..+++++++....+.|++++.......+.. ......+|++.++++++++-.....+.+++...........      
T Consensus        63 av~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~------  136 (260)
T d1rwia_          63 AVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF------  136 (260)
T ss_dssp             EECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCC------
T ss_pred             EEcCCCCEEEeeeeeceeeeeeeccceeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeee------
Confidence            45566777777777777777654433222221 12467899999998887776666667777665443211100      


Q ss_pred             ccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeC
Q 043707          207 FKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAG  286 (347)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~  286 (347)
                                                ........+++.++++++++...++.|..+|.............-.....|++.
T Consensus       137 --------------------------~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d  190 (260)
T d1rwia_         137 --------------------------TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVD  190 (260)
T ss_dssp             --------------------------CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEEC
T ss_pred             --------------------------cccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceee
Confidence                                      122345688999999988888888899999987554333222444567889998


Q ss_pred             CCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          287 FDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       287 ~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                      +++ ++++....+.|..++......      .......-.....|+++++|.++++-.
T Consensus       191 ~~g~l~vsd~~~~~i~~~~~~~~~~------~~~~~~~~~~P~~i~~d~~g~l~vad~  242 (260)
T d1rwia_         191 EAGTVYVTEHNTNQVVKLLAGSTTS------TVLPFTGLNTPLAVAVDSDRTVYVADR  242 (260)
T ss_dssp             TTCCEEEEETTTTEEEEECTTCSCC------EECCCCSCCCEEEEEECTTCCEEEEEG
T ss_pred             eeeeeeeeecCCCEEEEEeCCCCeE------EEEccCCCCCeEEEEEeCCCCEEEEEC
Confidence            888 555555677888887653221      001112234678999999998776643

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.47  E-value=2.9e-05  Score=67.47  Aligned_cols=108  Identities=12%  Similarity=0.026  Sum_probs=70.2

Q ss_pred             CCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCC-CEE--EEEEe--cCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEccc
Q 043707          236 DAVSCLSLNAEQGLLYSGSW-DKTLKVWRISD-CKC--LESIN--AHDDAINSVVAGFDS--LVFTGSADGTVKVWRREL  307 (347)
Q Consensus       236 ~~V~~l~~~~~~~~l~s~s~-dg~i~vwdl~~-~~~--~~~~~--~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~  307 (347)
                      ..+.++.|+|++++|++++. ...|.+|+... ++.  ...+.  ........++|+|++  +.++...+++|.+|++..
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence            34789999999998888875 45688887643 222  22222  234568899999998  445566789999999875


Q ss_pred             CCccceee----eh---------hhhhccCCcEEEEEEccCCCEEEEec
Q 043707          308 QGKGTKHF----LA---------QVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       308 ~~~~~~~~----~~---------~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                      ........    ..         .....+......+.++|+|++|+++.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsn  273 (365)
T d1jofa_         225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEc
Confidence            43210000    00         01112334567899999999998864

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.46  E-value=0.00029  Score=59.69  Aligned_cols=216  Identities=15%  Similarity=0.032  Sum_probs=116.9

Q ss_pred             EeecCCEEEEecCCCcEEEEeCCCc--ceeeecCCCCeeEEEEeCCCCEEEEEeCC----CcEEEEecCCCCCceeeeec
Q 043707          129 LAASGDLLYTGSDSKNIRVWKNLKE--FSGFKSNSGLVKAIIITGDSNKIFTGHQD----GKIRIWKVSRKNPSVHKRVG  202 (347)
Q Consensus       129 l~~~~~~l~tg~~dg~I~vwd~~~~--~~~~~~h~~~V~~l~~sp~~~~l~s~~~D----g~I~vwd~~~~~~~~~~~~~  202 (347)
                      +..+|+++++-...+.|+.|+....  ...+.........|++.++|+.+++...+    +.|...+.............
T Consensus        47 ~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~  126 (319)
T d2dg1a1          47 FDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL  126 (319)
T ss_dssp             ECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS
T ss_pred             ECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCC
Confidence            3446788888888899999985433  33344455678899999999877765432    23444444443322111100


Q ss_pred             ccccccceEEeccCCCeEE---------------EEeecc-e-eeeeecCCCeeEEEEcCCCCEEEEE-eCCCcEEEEeC
Q 043707          203 SLPTFKDYVKSSVNPKNYV---------------EVRRNR-N-VLKIRHYDAVSCLSLNAEQGLLYSG-SWDKTLKVWRI  264 (347)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~---------------~~~~~~-~-~~~~~h~~~V~~l~~~~~~~~l~s~-s~dg~i~vwdl  264 (347)
                      .......-+....++..++               .+.... . ......-...+.|+|+++++.|+.+ +..+.|..||+
T Consensus       127 ~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~  206 (319)
T d2dg1a1         127 STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIAL  206 (319)
T ss_dssp             SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             CcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEE
Confidence            0000011111111222111               111111 1 1112223345679999999866555 55789999988


Q ss_pred             CCC-E---EEE-E---EecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccC
Q 043707          265 SDC-K---CLE-S---INAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQE  335 (347)
Q Consensus       265 ~~~-~---~~~-~---~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~  335 (347)
                      ... .   ... .   ..........+++..+| +.++....+.|.+||.. +.......+...-..+...+++++|.++
T Consensus       207 ~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~-G~~l~~i~~P~~~~~~~~~~~~~~~~~~  285 (319)
T d2dg1a1         207 EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPG  285 (319)
T ss_dssp             CTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred             cCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC-CcEEEEEeCCCcCCCcCceeeeEEEeCC
Confidence            532 1   111 1   11112235678888888 55555678999999964 2221111222222345567889999998


Q ss_pred             CCEEEEecCC
Q 043707          336 SAVVYCGSSD  345 (347)
Q Consensus       336 ~~~l~sgs~D  345 (347)
                      ...+++...|
T Consensus       286 ~~~~~~t~~~  295 (319)
T d2dg1a1         286 TNQLIICSND  295 (319)
T ss_dssp             SCEEEEEEEC
T ss_pred             CCEEEEEcCC
Confidence            8777766543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.37  E-value=1.3e-05  Score=66.22  Aligned_cols=179  Identities=8%  Similarity=0.012  Sum_probs=108.2

Q ss_pred             EEeecCCEEEE-ecCCCcEEEEeCCCcceeeecC--CCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeeccc
Q 043707          128 SLAASGDLLYT-GSDSKNIRVWKNLKEFSGFKSN--SGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSL  204 (347)
Q Consensus       128 ~l~~~~~~l~t-g~~dg~I~vwd~~~~~~~~~~h--~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~  204 (347)
                      ++..+|++.++ .+..+.|..++...........  ......+++.++++.+++....+.+++++-.+....  ...   
T Consensus        20 avd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~--~~~---   94 (260)
T d1rwia_          20 AVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTV--LPF---   94 (260)
T ss_dssp             EECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEE--CCC---
T ss_pred             EEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceee--eee---
Confidence            55566776555 4566778888755443222211  234678899999987777766666666554333211  100   


Q ss_pred             ccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEE
Q 043707          205 PTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV  284 (347)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~  284 (347)
                                                  ........+++.++++++++-.....+..++...................|+
T Consensus        95 ----------------------------~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~  146 (260)
T d1rwia_          95 ----------------------------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVA  146 (260)
T ss_dssp             ----------------------------CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEE
T ss_pred             ----------------------------eeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceee
Confidence                                        1234578899999998887776677777777654332211112223457888


Q ss_pred             eCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707          285 AGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       285 ~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                      +.+++ ++++...++.|..++......      .............|++.++|.++++....
T Consensus       147 ~~~~g~~~v~~~~~~~i~~~d~~~~~~------~~~~~~~~~~p~gi~~d~~g~l~vsd~~~  202 (260)
T d1rwia_         147 VDNSGNVYVTDTDNNRVVKLEAESNNQ------VVLPFTDITAPWGIAVDEAGTVYVTEHNT  202 (260)
T ss_dssp             ECTTCCEEEEEGGGTEEEEECTTTCCE------EECCCSSCCSEEEEEECTTCCEEEEETTT
T ss_pred             ecCCCCEeeecccccccccccccccee------eeeeccccCCCccceeeeeeeeeeeecCC
Confidence            88887 666667788899998764322      11112334467899999999877776543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.34  E-value=2.5e-05  Score=65.10  Aligned_cols=147  Identities=9%  Similarity=0.201  Sum_probs=103.7

Q ss_pred             EeecCCEEEEecCCCcEEEEeCCCc-ceee--ecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccc
Q 043707          129 LAASGDLLYTGSDSKNIRVWKNLKE-FSGF--KSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLP  205 (347)
Q Consensus       129 l~~~~~~l~tg~~dg~I~vwd~~~~-~~~~--~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~  205 (347)
                      +..++.++++....+.+.+++.... +..+  ..+......+++.++++.+++....+.|++||..... .  ..+..  
T Consensus       121 vd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~-~--~~~g~--  195 (279)
T d1q7fa_         121 VDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQY-L--RQIGG--  195 (279)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCE-E--EEESC--
T ss_pred             cccCCcEEEEeeccceeeEeccCCceeecccccccccccceeeeccceeEEeeeccccceeeeecCCce-e--eeecc--
Confidence            3445777777777777888875433 3332  2345678889999999888888888999999875431 1  11110  


Q ss_pred             cccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCCCEEEEEEecC--CCcEEE
Q 043707          206 TFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRISDCKCLESINAH--DDAINS  282 (347)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~vwdl~~~~~~~~~~~h--~~~v~~  282 (347)
                                                .+.......|++.++++++++-.. ++.|.+|+ .+++.+..+...  ......
T Consensus       196 --------------------------~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~  248 (279)
T d1q7fa_         196 --------------------------EGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFD  248 (279)
T ss_dssp             --------------------------TTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEE
T ss_pred             --------------------------cccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeE
Confidence                                      023445678999999997777554 45699998 568888777533  335788


Q ss_pred             EEeCCCCEEEEEeCCCcEEEEEccc
Q 043707          283 VVAGFDSLVFTGSADGTVKVWRREL  307 (347)
Q Consensus       283 i~~~~~~~l~s~~~dg~I~vwd~~~  307 (347)
                      |++.+++.|+++..++.|++|....
T Consensus       249 vav~~dG~l~V~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         249 VALMDDGSVVLASKDYRLYIYRYVQ  273 (279)
T ss_dssp             EEEETTTEEEEEETTTEEEEEECSC
T ss_pred             EEEeCCCcEEEEeCCCeEEEEEeee
Confidence            9999999777788899999998863

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.34  E-value=0.00011  Score=62.22  Aligned_cols=209  Identities=9%  Similarity=0.083  Sum_probs=112.3

Q ss_pred             EEeecCCEEEEecC-------CCcEEEEeCCCccee-eec-----CCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 043707          128 SLAASGDLLYTGSD-------SKNIRVWKNLKEFSG-FKS-----NSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKN  194 (347)
Q Consensus       128 ~l~~~~~~l~tg~~-------dg~I~vwd~~~~~~~-~~~-----h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~  194 (347)
                      ++..+|+++++...       +|+|..||....... +..     ..+.-..++|.++++.++++...+.|...+.+...
T Consensus        24 a~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~  103 (314)
T d1pjxa_          24 VFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTF  103 (314)
T ss_dssp             EECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETTSCE
T ss_pred             EEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCCcE
Confidence            45566776665432       467888885543222 111     12345689999999888888877778888876543


Q ss_pred             Cceeeeec-ccc-cccceEEeccCCCeEE------------------------EEeec-ceeeeeecCCCeeEEEEcCCC
Q 043707          195 PSVHKRVG-SLP-TFKDYVKSSVNPKNYV------------------------EVRRN-RNVLKIRHYDAVSCLSLNAEQ  247 (347)
Q Consensus       195 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~~------------------------~~~~~-~~~~~~~h~~~V~~l~~~~~~  247 (347)
                      ........ ..+ ....-+....++..++                        .+... ............+.++|++++
T Consensus       104 ~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~~pNGi~~~~d~  183 (314)
T d1pjxa_         104 EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMN  183 (314)
T ss_dssp             EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEEEEEEEECT
T ss_pred             EEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeCCcceeeeeEECCCC
Confidence            21111100 000 0001111111222221                        11111 111111222334578888875


Q ss_pred             C-----EEEEEeCCCcEEEEeCCCCEEEE------EEec-CCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCcccee
Q 043707          248 G-----LLYSGSWDKTLKVWRISDCKCLE------SINA-HDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKH  314 (347)
Q Consensus       248 ~-----~l~s~s~dg~i~vwdl~~~~~~~------~~~~-h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~  314 (347)
                      .     ++++-+..+.|..||+.....+.      .+.. +......+++..+| ++++....+.|.+||.+...     
T Consensus       184 d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~-----  258 (314)
T d1pjxa_         184 DGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ-----  258 (314)
T ss_dssp             TSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS-----
T ss_pred             CcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCE-----
Confidence            4     44455667888888875332221      2221 22345678888888 44455578899999876332     


Q ss_pred             eehhhhhccCCcEEEEEEccCCCEEEEe
Q 043707          315 FLAQVLLKQENAITALAVNQESAVVYCG  342 (347)
Q Consensus       315 ~~~~~~~~h~~~V~~l~~~p~~~~l~sg  342 (347)
                       +...+..+...+++++|.|+++.|+..
T Consensus       259 -~~~~i~~p~~~~t~~afg~d~~~lyVt  285 (314)
T d1pjxa_         259 -PKMRIRCPFEKPSNLHFKPQTKTIFVT  285 (314)
T ss_dssp             -CSEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred             -EEEEEECCCCCEEEEEEeCCCCEEEEE
Confidence             223333445678999999999755544

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.34  E-value=8.7e-05  Score=60.84  Aligned_cols=164  Identities=13%  Similarity=0.052  Sum_probs=96.5

Q ss_pred             cEEEEeCC-CcceeeecCCCCeeEEEEeCCCCEEEEEeCCC---cEEEEecCCCCCceeeeecccccccceEEeccCCCe
Q 043707          144 NIRVWKNL-KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDG---KIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKN  219 (347)
Q Consensus       144 ~I~vwd~~-~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg---~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (347)
                      .|+|-|.. ...+.+..+...+..-+|+|||++||-.....   .+.+.+...+...                       
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-----------------------   76 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-----------------------   76 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-----------------------
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-----------------------
Confidence            35555532 34555555667788999999999998665433   2444454443311                       


Q ss_pred             EEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CCc--EEEEeCCCCEEEEEEecCCCcEEEEEeCCCC--EEEEE
Q 043707          220 YVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKT--LKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTG  294 (347)
Q Consensus       220 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~--i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~--~l~s~  294 (347)
                                ....+........|+|++..++.... ++.  +..+........... ..........+++++  .+++.
T Consensus        77 ----------~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  145 (269)
T d2hqsa1          77 ----------QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAFTS  145 (269)
T ss_dssp             ----------EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECC-CCSSCEEEEEECTTSSEEEEEE
T ss_pred             ----------EEeeeecccccceecCCCCeeeEeeecCCccceeecccccccceeee-eccccccccccccccccceecc
Confidence                      11136677888999999998887664 333  233333333333222 233334444566655  66666


Q ss_pred             eCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707          295 SADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG  346 (347)
Q Consensus       295 ~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG  346 (347)
                      ..++...+|.......     ....+..+........|+|+++.++..+.++
T Consensus       146 ~~~g~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~  192 (269)
T d2hqsa1         146 DQAGRPQVYKVNINGG-----APQRITWEGSQNQDADVSSDGKFMVMVSSNG  192 (269)
T ss_dssp             CTTSSCEEEEEETTSS-----CCEECCCSSSEEEEEEECTTSSEEEEEEECS
T ss_pred             cccCCceEeeeecccc-----cceeeecccccccccccccccceeEEEeecC
Confidence            6677666665543332     2223334556778889999999888776543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=0.00025  Score=57.94  Aligned_cols=210  Identities=9%  Similarity=-0.002  Sum_probs=110.1

Q ss_pred             eEeeeeccccEEE--EeecCCEEEEecC-CC--cEEEEeCC-CcceeeecCCCCeeEEEEeCCCCEEEEEeC-CCcEEEE
Q 043707          116 IGSIVRKEGHIYS--LAASGDLLYTGSD-SK--NIRVWKNL-KEFSGFKSNSGLVKAIIITGDSNKIFTGHQ-DGKIRIW  188 (347)
Q Consensus       116 i~~l~~h~~~V~~--l~~~~~~l~tg~~-dg--~I~vwd~~-~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~-Dg~I~vw  188 (347)
                      ...+..+...+..  ++++|+.||-... .+  .+.+.+.. .....+..+.+......|+|+|..++.... ++...++
T Consensus        31 ~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~  110 (269)
T d2hqsa1          31 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY  110 (269)
T ss_dssp             CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred             cEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCcccee
Confidence            4444455566655  4457887765433 33  35555543 334556667788999999999998877653 3333333


Q ss_pred             ecCCCCCceeeeec---------cccccc-ceEEeccCCC-eEEEEe--ecceeeeeecCCCeeEEEEcCCCCEEEEEeC
Q 043707          189 KVSRKNPSVHKRVG---------SLPTFK-DYVKSSVNPK-NYVEVR--RNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW  255 (347)
Q Consensus       189 d~~~~~~~~~~~~~---------~~~~~~-~~~~~~~~~~-~~~~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~  255 (347)
                      ..............         ...... .++.....+. .+....  ..................|+|++..++..+.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~  190 (269)
T d2hqsa1         111 VMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSS  190 (269)
T ss_dssp             EEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEE
T ss_pred             ecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEee
Confidence            33222211111000         001111 1111111111 111111  1112222334455667889999998777655


Q ss_pred             C-CcEE--EEeCCCCEEEEEEecCCCcEEEEEeCCCC-EE-EEEeC--CCcEEEEEcccCCccceeeehhhhhccCCcEE
Q 043707          256 D-KTLK--VWRISDCKCLESINAHDDAINSVVAGFDS-LV-FTGSA--DGTVKVWRRELQGKGTKHFLAQVLLKQENAIT  328 (347)
Q Consensus       256 d-g~i~--vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l-~s~~~--dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~  328 (347)
                      + +...  +.|...+..  .+..+........|+||| .| ++...  ...|.++++....       ...+......+.
T Consensus       191 ~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~-------~~~lt~~~g~~~  261 (269)
T d2hqsa1         191 NGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-------KARLPATDGQVK  261 (269)
T ss_dssp             CSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-------EEECCCSSSEEE
T ss_pred             cCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC-------EEEEeCCCCcEE
Confidence            4 4444  445444433  333445566778999998 44 34333  3467788876322       233444566788


Q ss_pred             EEEEcc
Q 043707          329 ALAVNQ  334 (347)
Q Consensus       329 ~l~~~p  334 (347)
                      ..+|+|
T Consensus       262 ~p~WSP  267 (269)
T d2hqsa1         262 FPAWSP  267 (269)
T ss_dssp             EEEECC
T ss_pred             eEEeCC
Confidence            899998

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.26  E-value=0.00058  Score=57.08  Aligned_cols=201  Identities=8%  Similarity=0.056  Sum_probs=113.4

Q ss_pred             CCEEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccce--
Q 043707          133 GDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDY--  210 (347)
Q Consensus       133 ~~~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~--  210 (347)
                      +.++.+--..+.|..||..............+.++++.+++.++++ +.+ -|.++|..+++................  
T Consensus        30 ~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd  107 (295)
T d2ghsa1          30 GTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSND  107 (295)
T ss_dssp             TEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEE
T ss_pred             CEEEEEECCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCccccee
Confidence            3455555566788888866543333334567889999998866654 555 488899888764332221111111111  


Q ss_pred             EEeccCCC---------------eEEEEeecceeeeeecCCCeeEEEEcCCCCEEEE-EeCCCcEEEEeCCCC-------
Q 043707          211 VKSSVNPK---------------NYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYS-GSWDKTLKVWRISDC-------  267 (347)
Q Consensus       211 ~~~~~~~~---------------~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~dg~i~vwdl~~~-------  267 (347)
                      .....++.               .++.................+.++|+++++.|+. -+..+.|..+++...       
T Consensus       108 ~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~  187 (295)
T d2ghsa1         108 GRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK  187 (295)
T ss_dssp             EEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC
T ss_pred             eEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccc
Confidence            11111111               1222222222222233344578999999886554 455788888887421       


Q ss_pred             -EEEEEEecCCCcEEEEEeCCCCEEEEE-eCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEc-cCCCEEEEe
Q 043707          268 -KCLESINAHDDAINSVVAGFDSLVFTG-SADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVN-QESAVVYCG  342 (347)
Q Consensus       268 -~~~~~~~~h~~~v~~i~~~~~~~l~s~-~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~-p~~~~l~sg  342 (347)
                       .....+.........+++..+|.|.++ -..+.|..||..  ++     +...+.-....+++++|- ++.+.|+..
T Consensus       188 ~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~--G~-----~~~~i~lP~~~~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         188 AEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD--GN-----HIARYEVPGKQTTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             CEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT--CC-----EEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred             eEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC--Cc-----EeeEecCCCCceEEEEEeCCCCCEEEEE
Confidence             112223334556788888888854444 467789999965  32     333333344579999996 676666544

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.16  E-value=7.5e-05  Score=63.38  Aligned_cols=121  Identities=12%  Similarity=0.137  Sum_probs=82.5

Q ss_pred             CeeEEEEeCCCC-----EEEEEeCCCcEEEEecCCCCCceeeeec-ccccccceEEeccCCCeEEEEeecceeeeeecCC
Q 043707          163 LVKAIIITGDSN-----KIFTGHQDGKIRIWKVSRKNPSVHKRVG-SLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYD  236 (347)
Q Consensus       163 ~V~~l~~sp~~~-----~l~s~~~Dg~I~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  236 (347)
                      .-+.++|+|++.     ++++-+..+.|..||+..........+. ..+                          .....
T Consensus       173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~--------------------------~~~~~  226 (314)
T d1pjxa_         173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP--------------------------GTHEG  226 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC--------------------------CCSSC
T ss_pred             eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcc--------------------------ccccc
Confidence            345788888654     3444466778888877643221111110 000                          01222


Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCC
Q 043707          237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQG  309 (347)
Q Consensus       237 ~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~  309 (347)
                      ....|++..+|+++++....+.|.+||.+.++.+..+.......++++|.+++  ++++.+.+|.|..+++...+
T Consensus       227 ~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         227 GADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             EEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             cceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence            34578999999988887778999999988887777777776778999999987  66677788988888886554

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.13  E-value=0.0012  Score=54.37  Aligned_cols=206  Identities=15%  Similarity=0.198  Sum_probs=114.4

Q ss_pred             EEeecCCEEEEecCCCcEEEEeCCCc-ceeeec------CCCCeeEEEEeCCCC-EEEEE-eCCCcEEEEecCCCCCcee
Q 043707          128 SLAASGDLLYTGSDSKNIRVWKNLKE-FSGFKS------NSGLVKAIIITGDSN-KIFTG-HQDGKIRIWKVSRKNPSVH  198 (347)
Q Consensus       128 ~l~~~~~~l~tg~~dg~I~vwd~~~~-~~~~~~------h~~~V~~l~~sp~~~-~l~s~-~~Dg~I~vwd~~~~~~~~~  198 (347)
                      ++.++++++++-..+..|++||.... +..+..      ....-..+++..+.. .+++. +.++.|.+++.... ....
T Consensus        29 avd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~-~~~~  107 (279)
T d1q7fa_          29 AVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQ-FVRK  107 (279)
T ss_dssp             EECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSC-EEEE
T ss_pred             EEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccccc-ceee
Confidence            55667888888777889999985432 222211      112345666666433 33333 34456766665432 1111


Q ss_pred             eeecccc--------cccceEEeccCCCeEEEEeecceee-e---eecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 043707          199 KRVGSLP--------TFKDYVKSSVNPKNYVEVRRNRNVL-K---IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD  266 (347)
Q Consensus       199 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~  266 (347)
                      .......        ....++........+.........+ .   ..+......+++.++++++++....+.|++||. +
T Consensus       108 ~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~  186 (279)
T d1q7fa_         108 FGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-E  186 (279)
T ss_dssp             ECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-T
T ss_pred             cCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeecccccccccccceeeeccceeEEeeeccccceeeeec-C
Confidence            1101000        0011222222222222222221111 1   124556788899999988888888899999996 5


Q ss_pred             CEEEEEEe--cCCCcEEEEEeCCCCEEEEE-e-CCCcEEEEEcccCCccceeeehhhhh--ccCCcEEEEEEccCCCEEE
Q 043707          267 CKCLESIN--AHDDAINSVVAGFDSLVFTG-S-ADGTVKVWRRELQGKGTKHFLAQVLL--KQENAITALAVNQESAVVY  340 (347)
Q Consensus       267 ~~~~~~~~--~h~~~v~~i~~~~~~~l~s~-~-~dg~I~vwd~~~~~~~~~~~~~~~~~--~h~~~V~~l~~~p~~~~l~  340 (347)
                      ++.+.++.  +.......|++.+++.|+.+ . .++.|.+|+..  ++     .+..+.  ........|++.++|.+++
T Consensus       187 G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~--G~-----~~~~~~~~~~~~~p~~vav~~dG~l~V  259 (279)
T d1q7fa_         187 GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--GQ-----LISALESKVKHAQCFDVALMDDGSVVL  259 (279)
T ss_dssp             CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--SC-----EEEEEEESSCCSCEEEEEEETTTEEEE
T ss_pred             CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC--CC-----EEEEEeCCCCCCCEeEEEEeCCCcEEE
Confidence            67777773  34456788999999844433 3 35579999864  22     222222  1233578999999997666


Q ss_pred             Ee
Q 043707          341 CG  342 (347)
Q Consensus       341 sg  342 (347)
                      +.
T Consensus       260 ~~  261 (279)
T d1q7fa_         260 AS  261 (279)
T ss_dssp             EE
T ss_pred             Ee
Confidence            54

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=0.00014  Score=65.16  Aligned_cols=112  Identities=8%  Similarity=-0.010  Sum_probs=70.4

Q ss_pred             CeeEEEEeCCCCEEEEEe---------CCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeee
Q 043707          163 LVKAIIITGDSNKIFTGH---------QDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIR  233 (347)
Q Consensus       163 ~V~~l~~sp~~~~l~s~~---------~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (347)
                      .+....|+||+++++...         ..+.+.++|+.++.........                              .
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~------------------------------~  111 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPE------------------------------V  111 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTT------------------------------C
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCcc------------------------------C
Confidence            567788999999887764         3467888898877643221110                              1


Q ss_pred             cCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEe-cCCCc-----------------EEEEEeCCCC-EEEEE
Q 043707          234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN-AHDDA-----------------INSVVAGFDS-LVFTG  294 (347)
Q Consensus       234 h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~-~h~~~-----------------v~~i~~~~~~-~l~s~  294 (347)
                      ....+....|+|+|+.|+-.. ++.|.+.+...++.++... +....                 -..+.|+||| .||..
T Consensus       112 ~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~  190 (465)
T d1xfda1         112 SNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA  190 (465)
T ss_dssp             CSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred             CccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEE
Confidence            233455678999999888766 6788888887765544332 11111                 1467799998 55544


Q ss_pred             e-CCCcEEEEEc
Q 043707          295 S-ADGTVKVWRR  305 (347)
Q Consensus       295 ~-~dg~I~vwd~  305 (347)
                      . .+..|..+.+
T Consensus       191 ~~D~s~V~~~~~  202 (465)
T d1xfda1         191 AINDSRVPIMEL  202 (465)
T ss_dssp             EEECTTSCEEEE
T ss_pred             Eecccccceeec
Confidence            3 3444444443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=7.9e-05  Score=66.90  Aligned_cols=145  Identities=8%  Similarity=0.036  Sum_probs=87.8

Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC
Q 043707          167 IIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE  246 (347)
Q Consensus       167 l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~  246 (347)
                      ..|.+++.++. -..+|.|.+||+.+++.........+                             ....+....|+||
T Consensus        22 ~~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~-----------------------------~~~~~~~~~~SpD   71 (465)
T d1xfda1          22 AKWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKI-----------------------------ESLRAIRYEISPD   71 (465)
T ss_dssp             CCBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTT-----------------------------TTTTCSEEEECTT
T ss_pred             CEEeCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCccc-----------------------------cccccceeEECCC
Confidence            35778776654 35678999999988864322221111                             2235667889999


Q ss_pred             CCEEEEEe---------CCCcEEEEeCCCCEEEEE--EecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCcccee
Q 043707          247 QGLLYSGS---------WDKTLKVWRISDCKCLES--INAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKH  314 (347)
Q Consensus       247 ~~~l~s~s---------~dg~i~vwdl~~~~~~~~--~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~  314 (347)
                      +++++...         ..+.+.++|+.+++....  .......+....|+||| .||-. .++.|.+.+...+..  . 
T Consensus        72 ~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv-~~~nl~~~~~~~~~~--~-  147 (465)
T d1xfda1          72 REYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFI-FENNIYYCAHVGKQA--I-  147 (465)
T ss_dssp             SSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEE-ETTEEEEESSSSSCC--E-
T ss_pred             CCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEE-ecceEEEEecCCCce--E-
Confidence            99887764         356789999987754322  22334456667899998 44443 366787777653321  0 


Q ss_pred             eehh------hhhccC---------CcEEEEEEccCCCEEEEecCC
Q 043707          315 FLAQ------VLLKQE---------NAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       315 ~~~~------~~~~h~---------~~V~~l~~~p~~~~l~sgs~D  345 (347)
                      .+..      .+.+..         ..-.++-|+|||++||....|
T Consensus       148 ~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D  193 (465)
T d1xfda1         148 RVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIN  193 (465)
T ss_dssp             EEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEE
T ss_pred             EEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEec
Confidence            0000      000111         112578899999999987544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.51  E-value=0.006  Score=51.20  Aligned_cols=144  Identities=9%  Similarity=0.057  Sum_probs=85.3

Q ss_pred             CCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEE
Q 043707          162 GLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCL  241 (347)
Q Consensus       162 ~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  241 (347)
                      ..+..++|.++|+++++-...++|..|+...+......                                .........|
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~--------------------------------~~~~~~p~gl   87 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF--------------------------------VSHKANPAAI   87 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE--------------------------------ECSSSSEEEE
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEE--------------------------------eCCCCCeeEE
Confidence            34678999999988877778898988887765421111                                1134457789


Q ss_pred             EEcCCCCEEEEEeCC----CcEEEEeCCCCEEEEEEec--CCCcEEEEEeCCCCEEEEEeCCC-----cEEEEEcccCCc
Q 043707          242 SLNAEQGLLYSGSWD----KTLKVWRISDCKCLESINA--HDDAINSVVAGFDSLVFTGSADG-----TVKVWRRELQGK  310 (347)
Q Consensus       242 ~~~~~~~~l~s~s~d----g~i~vwdl~~~~~~~~~~~--h~~~v~~i~~~~~~~l~s~~~dg-----~I~vwd~~~~~~  310 (347)
                      +++++|+++++...+    +.+...+............  -....+.+++.++|.|+.+..++     .=.+|.+...+.
T Consensus        88 a~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~  167 (319)
T d2dg1a1          88 KIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR  167 (319)
T ss_dssp             EECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC
T ss_pred             EECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc
Confidence            999999888776432    3355555554443333321  12347788999998555554322     122333332221


Q ss_pred             cceeeehhhhhccCCcEEEEEEccCCCEEEEe
Q 043707          311 GTKHFLAQVLLKQENAITALAVNQESAVVYCG  342 (347)
Q Consensus       311 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sg  342 (347)
                           ....+...-...+.|+|+|+++.|+.+
T Consensus       168 -----~~~~~~~~~~~pnGia~s~dg~~lyva  194 (319)
T d2dg1a1         168 -----TVTPIIQNISVANGIALSTDEKVLWVT  194 (319)
T ss_dssp             -----CEEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred             -----eeEEEeeccceeeeeeeccccceEEEe
Confidence                 111112223356789999999877655

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.30  E-value=0.012  Score=47.49  Aligned_cols=66  Identities=14%  Similarity=0.105  Sum_probs=44.7

Q ss_pred             EEeec--CCEEEEecCCCcEEEEeCC-CcceeeecCCCCeeEEEEeCCCCEEEEEeC-CC-----cEEEEecCCCC
Q 043707          128 SLAAS--GDLLYTGSDSKNIRVWKNL-KEFSGFKSNSGLVKAIIITGDSNKIFTGHQ-DG-----KIRIWKVSRKN  194 (347)
Q Consensus       128 ~l~~~--~~~l~tg~~dg~I~vwd~~-~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~-Dg-----~I~vwd~~~~~  194 (347)
                      .++|+  |+.++-.+ +|.|.+.|.. ...+.+..+.+.+...+|+|||++|+-... ++     .|.+++..+++
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~   79 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE   79 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence            35566  88766554 4568888865 345566677788999999999999886542 22     36666666654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.62  E-value=0.0081  Score=48.55  Aligned_cols=97  Identities=8%  Similarity=-0.034  Sum_probs=60.0

Q ss_pred             EEcCC--CCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEE-EEeCC---C--cEEEEEcccCCccc
Q 043707          242 SLNAE--QGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF-TGSAD---G--TVKVWRRELQGKGT  312 (347)
Q Consensus       242 ~~~~~--~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~-s~~~d---g--~I~vwd~~~~~~~~  312 (347)
                      .++|+  |+.++-.+ ++.|.+.|+..++.. .+..+.+.+....|+||| .|| +...+   .  .|.+++...+..  
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~--   80 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI--   80 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE--
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce--
Confidence            35677  88877665 567888899887754 566677788899999998 555 33222   2  355555543321  


Q ss_pred             eeeehhh---hhccCCcEEEEEEccCCCEEEEec
Q 043707          313 KHFLAQV---LLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       313 ~~~~~~~---~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                       ..+...   ...........+|+|+|+.|+...
T Consensus        81 -~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          81 -KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             -EECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             -EEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence             111100   011123456889999999888654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.27  E-value=0.18  Score=41.14  Aligned_cols=110  Identities=8%  Similarity=0.048  Sum_probs=71.7

Q ss_pred             CCeeEEEEeCCCCEE-EEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeE
Q 043707          162 GLVKAIIITGDSNKI-FTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSC  240 (347)
Q Consensus       162 ~~V~~l~~sp~~~~l-~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  240 (347)
                      ..-..++|+++++.+ ++-+..+.|..++++............       +         +        ...+.......
T Consensus       148 ~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~-------~---------~--------~~~~~~g~pdG  203 (295)
T d2ghsa1         148 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEV-------F---------I--------DSTGIKGGMDG  203 (295)
T ss_dssp             SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEE-------E---------E--------ECTTSSSEEEE
T ss_pred             CCcceeeecCCCceEEEeecccceeeEeeecccccccccceEE-------E---------e--------ccCcccccccc
Confidence            346789999988765 455567889888876432211100000       0         0        00012334677


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeC-CCC--EEEEEeC
Q 043707          241 LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAG-FDS--LVFTGSA  296 (347)
Q Consensus       241 l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~-~~~--~l~s~~~  296 (347)
                      +++..+|++.++.-..+.|..|| .+++.+..+......+++++|. ++.  +++|...
T Consensus       204 ~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         204 SVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             EEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             eEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence            89999998777776778899999 4788999988776779999995 554  5555443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.97  E-value=0.65  Score=36.96  Aligned_cols=147  Identities=8%  Similarity=0.042  Sum_probs=87.0

Q ss_pred             CCCCeeEEEEeCCCCEEEEE-eCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCe
Q 043707          160 NSGLVKAIIITGDSNKIFTG-HQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAV  238 (347)
Q Consensus       160 h~~~V~~l~~sp~~~~l~s~-~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  238 (347)
                      +...+.+|+|.+..+.|+-. ..++.|+..+++.........                                .....+
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~--------------------------------~~~~~p   81 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR--------------------------------QDLGSP   81 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC--------------------------------TTCCCE
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEE--------------------------------eccccc
Confidence            34457889999866666555 456778888887654321110                                122457


Q ss_pred             eEEEEcCCCCEEEEE-eCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCC-CEEEEE-eCCCcEEEEEcccCCccceee
Q 043707          239 SCLSLNAEQGLLYSG-SWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTG-SADGTVKVWRRELQGKGTKHF  315 (347)
Q Consensus       239 ~~l~~~~~~~~l~s~-s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~-~~l~s~-~~dg~I~vwd~~~~~~~~~~~  315 (347)
                      ..|++..-+..|+.+ ...+.|.+.++....+...+.........++..|. ++++-. ...+..+||.....+.... .
T Consensus        82 ~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~-~  160 (263)
T d1npea_          82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR-I  160 (263)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE-E
T ss_pred             cEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce-e
Confidence            889998766666544 45778999998755433333333456889999876 454433 2333445665543333111 1


Q ss_pred             ehhhhhccCCcEEEEEEccCCCEEEEe
Q 043707          316 LAQVLLKQENAITALAVNQESAVVYCG  342 (347)
Q Consensus       316 ~~~~~~~h~~~V~~l~~~p~~~~l~sg  342 (347)
                      +   ....-....+|++.+.++.|+.+
T Consensus       161 i---~~~~~~~P~glaiD~~~~~lYw~  184 (263)
T d1npea_         161 L---AQDNLGLPNGLTFDAFSSQLCWV  184 (263)
T ss_dssp             E---ECTTCSCEEEEEEETTTTEEEEE
T ss_pred             e---eeecccccceEEEeecCcEEEEE
Confidence            1   11223466899999888777655

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.35  E-value=0.15  Score=46.10  Aligned_cols=54  Identities=13%  Similarity=0.102  Sum_probs=37.0

Q ss_pred             CcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCc
Q 043707          257 KTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGK  310 (347)
Q Consensus       257 g~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~  310 (347)
                      |.|.-+|+.+++.+-+...-............+++++|+.||.++.+|.++++.
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~  497 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcE
Confidence            568888999988876654222111111222466888999999999999997664

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=93.85  E-value=0.49  Score=42.35  Aligned_cols=54  Identities=17%  Similarity=0.234  Sum_probs=37.8

Q ss_pred             CcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCc
Q 043707          257 KTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGK  310 (347)
Q Consensus       257 g~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~  310 (347)
                      |.|.-||+.+++.+-++...............+++++|+.||.++.+|.++++.
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~  491 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA  491 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcE
Confidence            578889999999887665322111111122356888999999999999997764

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=93.69  E-value=0.38  Score=40.26  Aligned_cols=110  Identities=15%  Similarity=0.123  Sum_probs=66.1

Q ss_pred             EEeecCCEEEEecCCC-----------cEEEEeCCCcc----ee-eecCCCCeeEEEEeCCCCEEEEEeCC-CcEEEEec
Q 043707          128 SLAASGDLLYTGSDSK-----------NIRVWKNLKEF----SG-FKSNSGLVKAIIITGDSNKIFTGHQD-GKIRIWKV  190 (347)
Q Consensus       128 ~l~~~~~~l~tg~~dg-----------~I~vwd~~~~~----~~-~~~h~~~V~~l~~sp~~~~l~s~~~D-g~I~vwd~  190 (347)
                      ++..+|++++.|+.+.           .+.+||.....    .. ...|.......++.+++++++.|+.+ ..+.+||.
T Consensus        26 ~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~  105 (387)
T d1k3ia3          26 IEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDS  105 (387)
T ss_dssp             EETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEG
T ss_pred             EEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecC
Confidence            3445677777776421           37789855321    11 12233334566788999898888765 57999998


Q ss_pred             CCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCC------CcEEEEeC
Q 043707          191 SRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWD------KTLKVWRI  264 (347)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d------g~i~vwdl  264 (347)
                      .+..-.   .....+                            ....-...+..+++++++.|+.+      ..+.+||.
T Consensus       106 ~~~~w~---~~~~~~----------------------------~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~  154 (387)
T d1k3ia3         106 SSDSWI---PGPDMQ----------------------------VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSP  154 (387)
T ss_dssp             GGTEEE---ECCCCS----------------------------SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEET
T ss_pred             ccCccc---cccccc----------------------------ccccccceeeecCCceeeeccccccccccceeeeecC
Confidence            876421   111111                            11122346667788888888752      35889998


Q ss_pred             CCCE
Q 043707          265 SDCK  268 (347)
Q Consensus       265 ~~~~  268 (347)
                      .+.+
T Consensus       155 ~~~~  158 (387)
T d1k3ia3         155 SSKT  158 (387)
T ss_dssp             TTTE
T ss_pred             CCCc
Confidence            7654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=93.40  E-value=0.97  Score=38.59  Aligned_cols=162  Identities=12%  Similarity=0.167  Sum_probs=87.9

Q ss_pred             EEEEEeCCCcEEEEecCCCCCceeeeecccccccceE---------EeccCC--CeEEEEeecceeeeeecCCCeeEEEE
Q 043707          175 KIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYV---------KSSVNP--KNYVEVRRNRNVLKIRHYDAVSCLSL  243 (347)
Q Consensus       175 ~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~--~~~~~~~~~~~~~~~~h~~~V~~l~~  243 (347)
                      .|.||+..|.|+|+-+-+.+......+........+=         ......  ..++.. +.......+.... ..+++
T Consensus        15 ~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~-~g~~~~~~GD~HH-P~~S~   92 (459)
T d1fwxa2          15 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAA-NGKRIHDNGDLHH-VHMSF   92 (459)
T ss_dssp             EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC---------------CCCCCBCC-EEEEE
T ss_pred             EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhc-cCcccccCCCcCC-Ccccc
Confidence            3788999999999999888755444433221111100         000000  001111 1111111111111 14555


Q ss_pred             cC---CCCEEEEEeC-CCcEEEEeCCCCEEEEEEec-CCCcEEEEEeCCCC---EEEEEeCCC-----------------
Q 043707          244 NA---EQGLLYSGSW-DKTLKVWRISDCKCLESINA-HDDAINSVVAGFDS---LVFTGSADG-----------------  298 (347)
Q Consensus       244 ~~---~~~~l~s~s~-dg~i~vwdl~~~~~~~~~~~-h~~~v~~i~~~~~~---~l~s~~~dg-----------------  298 (347)
                      -.   ||++|++... +.+|-+-|+++.++.+.+.. ....+..+...+++   +++.++.+.                 
T Consensus        93 TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~  172 (459)
T d1fwxa2          93 TEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV  172 (459)
T ss_dssp             ETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EE
T ss_pred             cCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcc
Confidence            44   7888888774 78899999999998775543 23445555554432   777776643                 


Q ss_pred             -cEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707          299 -TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD  345 (347)
Q Consensus       299 -~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D  345 (347)
                       .+.++|..+...     ..+...  ......++++++|+++++.+.+
T Consensus       173 ~~~t~ID~~tm~V-----~~QV~V--~g~ld~~~~s~dGK~af~TsyN  213 (459)
T d1fwxa2         173 NVFTAVDADKWEV-----AWQVLV--SGNLDNCDADYEGKWAFSTSYN  213 (459)
T ss_dssp             EEEEEEETTTTEE-----EEEEEE--SSCCCCEEECSSSSEEEEEESC
T ss_pred             eEEEEEecCCceE-----EEEeee--CCChhccccCCCCCEEEEEecc
Confidence             256677764332     111111  2245689999999999987743

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=92.99  E-value=0.66  Score=41.60  Aligned_cols=53  Identities=21%  Similarity=0.271  Sum_probs=37.2

Q ss_pred             CcEEEEeCCCCEEEEEEecCCCcEE-EEEeCCCCEEEEEeCCCcEEEEEcccCCc
Q 043707          257 KTLKVWRISDCKCLESINAHDDAIN-SVVAGFDSLVFTGSADGTVKVWRRELQGK  310 (347)
Q Consensus       257 g~i~vwdl~~~~~~~~~~~h~~~v~-~i~~~~~~~l~s~~~dg~I~vwd~~~~~~  310 (347)
                      |.|.-||+.+++.+-+.+....... .++ ...++|++|+.||.++.+|.++++.
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~ls-tagglVF~G~~dg~l~A~Da~TGe~  510 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLT-TAGNVVFQGTADGRLVAYHAATGEK  510 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEE-ETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEE-EcCCEEEEECCCCeEEEEECCCCcE
Confidence            4678889889888877654321111 122 2356888999999999999998764

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.75  E-value=2.4  Score=36.49  Aligned_cols=34  Identities=18%  Similarity=0.107  Sum_probs=27.4

Q ss_pred             CCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCC
Q 043707          162 GLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNP  195 (347)
Q Consensus       162 ~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~  195 (347)
                      ..-++|+|.|++++|++--..|+|++++..++..
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~   60 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSV   60 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcE
Confidence            4677999999998887776689999998777653

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.00  E-value=3  Score=35.80  Aligned_cols=111  Identities=6%  Similarity=0.067  Sum_probs=63.7

Q ss_pred             cCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEE--EEEe------cCCCcEEEEEeCCC----CEEEEEeC-----
Q 043707          234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL--ESIN------AHDDAINSVVAGFD----SLVFTGSA-----  296 (347)
Q Consensus       234 h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~--~~~~------~h~~~v~~i~~~~~----~~l~s~~~-----  296 (347)
                      .-...++|+|.|++++|++--.+|+|++++..+++..  ..+.      .-+.....|+++|+    ++|+....     
T Consensus        25 ~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~  104 (450)
T d1crua_          25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (450)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCC
Confidence            3467789999999998887755799999998776543  2221      12356788999986    34443211     


Q ss_pred             --C----Cc--EEEEEcccCCcc--ceeeehhhh-hccCCcEEEEEEccCCCEEEEecC
Q 043707          297 --D----GT--VKVWRRELQGKG--TKHFLAQVL-LKQENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       297 --d----g~--I~vwd~~~~~~~--~~~~~~~~~-~~h~~~V~~l~~~p~~~~l~sgs~  344 (347)
                        +    +.  |..+........  ....+...+ .........|+|.||+.+.++.++
T Consensus       105 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence              1    12  333333221110  001111111 111234579999999988777664

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.99  E-value=2.5  Score=37.65  Aligned_cols=55  Identities=24%  Similarity=0.245  Sum_probs=39.1

Q ss_pred             CCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCc
Q 043707          256 DKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGK  310 (347)
Q Consensus       256 dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~  310 (347)
                      .|.|.-+|+.+++.+-+++.+........-...+++++|+.||.++.+|.++++.
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~  519 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE  519 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcE
Confidence            3678889999999887776443222111122346888999999999999998764

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=91.94  E-value=2.3  Score=36.19  Aligned_cols=52  Identities=13%  Similarity=0.142  Sum_probs=31.0

Q ss_pred             ecCCEEEEe-cCCCcEEEEeCCCc--ceeee-cCCCCeeEEEEe--CCCCEEEEEeCC
Q 043707          131 ASGDLLYTG-SDSKNIRVWKNLKE--FSGFK-SNSGLVKAIIIT--GDSNKIFTGHQD  182 (347)
Q Consensus       131 ~~~~~l~tg-~~dg~I~vwd~~~~--~~~~~-~h~~~V~~l~~s--p~~~~l~s~~~D  182 (347)
                      ++|++|+.. -.+.+|-+-|+...  .+... .....+..+...  |+..+++.++++
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~  154 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGED  154 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECS
T ss_pred             cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCcc
Confidence            467766665 46788888886532  22222 234556766664  455677777764

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=91.71  E-value=3  Score=36.96  Aligned_cols=32  Identities=13%  Similarity=0.282  Sum_probs=27.8

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCEEEEEEecC
Q 043707          245 AEQGLLYSGSWDKTLKVWRISDCKCLESINAH  276 (347)
Q Consensus       245 ~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h  276 (347)
                      -.+.+++.|+.||.++.+|.++|+.+-+++..
T Consensus       467 TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~  498 (560)
T d1kv9a2         467 TAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ  498 (560)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             ECCCEEEEECCCCcEEEEECCCCcEeEEEECC
Confidence            35678899999999999999999999888743

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.64  E-value=0.81  Score=39.24  Aligned_cols=102  Identities=9%  Similarity=0.119  Sum_probs=60.4

Q ss_pred             eeEEEEcCCCCEEEEE-eCC----CcEEEEeCCCCEEEEE-EecCCCcEEEEEeCCCC--EEEEEe--------------
Q 043707          238 VSCLSLNAEQGLLYSG-SWD----KTLKVWRISDCKCLES-INAHDDAINSVVAGFDS--LVFTGS--------------  295 (347)
Q Consensus       238 V~~l~~~~~~~~l~s~-s~d----g~i~vwdl~~~~~~~~-~~~h~~~v~~i~~~~~~--~l~s~~--------------  295 (347)
                      +..++++|++++++.+ +.+    .+|+++|+.+++.+.. +.  ......++|.+|+  ++++.-              
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~--~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~  204 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc--cccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence            3456789999887743 223    3599999999987642 22  1122467899887  444431              


Q ss_pred             -CCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707          296 -ADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       296 -~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs  343 (347)
                       ....|..+.+.+...  ...++.........+..+..+.++++|+...
T Consensus       205 ~~~~~v~~h~lgt~~~--~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~  251 (430)
T d1qfma1         205 NLHQKLYYHVLGTDQS--EDILCAEFPDEPKWMGGAELSDDGRYVLLSI  251 (430)
T ss_dssp             CCCCEEEEEETTSCGG--GCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred             CCcceEEEEECCCCcc--ccccccccccCCceEEeeeccCCcceeeEEe
Confidence             122577777654332  1122222222334577888899998877543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.29  E-value=1.6  Score=36.61  Aligned_cols=100  Identities=7%  Similarity=-0.027  Sum_probs=64.8

Q ss_pred             cEEEEeecCCEEEEecCCCcEEEEeCCCcceee--ecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeec
Q 043707          125 HIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGF--KSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVG  202 (347)
Q Consensus       125 ~V~~l~~~~~~l~tg~~dg~I~vwd~~~~~~~~--~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~  202 (347)
                      .|..++++++.|+... ++.+..++........  ..-...+..+.+.|.  .++....+|.+.++++...+...... +
T Consensus        88 ~v~~vafs~d~l~v~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~-~  163 (381)
T d1xipa_          88 DVIFVCFHGDQVLVST-RNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQ-N  163 (381)
T ss_dssp             TEEEEEEETTEEEEEE-SSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEE-S
T ss_pred             CeEEEEeeCCEEEEEe-CCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccC-C
Confidence            4777888888777664 4567888765443332  233456888888776  67778889999999998775211100 0


Q ss_pred             ccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEe
Q 043707          203 SLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGS  254 (347)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s  254 (347)
                                                ..-..-...+.|++|++.+..++++.
T Consensus       164 --------------------------v~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         164 --------------------------VTSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             --------------------------EEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             --------------------------cceEEecCCceEEEEeCCcEEEEEeC
Confidence                                      00001236688999998888888874

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.06  E-value=2.8  Score=32.99  Aligned_cols=165  Identities=13%  Similarity=0.090  Sum_probs=91.7

Q ss_pred             cEEEEeCCCc-ceeeecCCCCeeEEEEeCCCCEEEEEe-CCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEE
Q 043707          144 NIRVWKNLKE-FSGFKSNSGLVKAIIITGDSNKIFTGH-QDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYV  221 (347)
Q Consensus       144 ~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s~~-~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (347)
                      .|+..++... ...+......+.+|+|.+..+.|+-.. .++.|+..+++........                      
T Consensus        11 ~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~----------------------   68 (266)
T d1ijqa1          11 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY----------------------   68 (266)
T ss_dssp             SEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C----------------------
T ss_pred             eEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcce----------------------
Confidence            4776765432 233333445678899998766666554 4556666665432211000                      


Q ss_pred             EEeecceeeeeecCCCeeEEEEcCCCCEEEEE-eCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCC-CEEEEEe--CC
Q 043707          222 EVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSG-SWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGS--AD  297 (347)
Q Consensus       222 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~-~~l~s~~--~d  297 (347)
                            ..........+..|++.+.+..|+.. ...++|.+.++........+.........++.+|. ++|+-..  ..
T Consensus        69 ------~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~  142 (266)
T d1ijqa1          69 ------DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP  142 (266)
T ss_dssp             ------EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSS
T ss_pred             ------EEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCC
Confidence                  00011123456788998766555555 45678999999876655555555566888998875 5554433  34


Q ss_pred             CcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEe
Q 043707          298 GTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCG  342 (347)
Q Consensus       298 g~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sg  342 (347)
                      +.|.-.++.  +..    ........-...++|++.+.++.|+.+
T Consensus       143 ~~I~r~~~d--Gs~----~~~l~~~~~~~p~gl~iD~~~~~lYw~  181 (266)
T d1ijqa1         143 AKIKKGGLN--GVD----IYSLVTENIQWPNGITLDLLSGRLYWV  181 (266)
T ss_dssp             CEEEEEETT--SCC----EEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred             cceeEeccC--CCc----eecccccccceeeEEEeeccccEEEEe
Confidence            455555554  221    111111223456788888877766655

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=90.89  E-value=2  Score=38.26  Aligned_cols=31  Identities=13%  Similarity=0.189  Sum_probs=27.6

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCEEEEEEecC
Q 043707          246 EQGLLYSGSWDKTLKVWRISDCKCLESINAH  276 (347)
Q Consensus       246 ~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h  276 (347)
                      .+.++++|+.||.++.+|.++|+.+-+++..
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~~  517 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTG  517 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeEEEECC
Confidence            5789999999999999999999999888743

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.17  E-value=3.8  Score=33.00  Aligned_cols=95  Identities=13%  Similarity=0.093  Sum_probs=67.0

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhh
Q 043707          241 LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVL  320 (347)
Q Consensus       241 l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~  320 (347)
                      .-.+|..+.|+.-+ ..++.|+|+++.+.++.+.-.+ .|.--.|-.+..|+... +..|+-|+++....     +.+.+
T Consensus        68 AIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~~~L~lVT-~taVYHW~~~g~s~-----P~k~f  139 (327)
T d1utca2          68 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVT-DNAVYHWSMEGESQ-----PVKMF  139 (327)
T ss_dssp             EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESSSSEEEEEC-SSEEEEEESSSSCC-----CEEEE
T ss_pred             hhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-CcEEEEecCCCEEEEEc-CCceEEEcccCCCC-----chhhh
Confidence            44678888887776 5689999999999999887554 56667787777666554 45799999863322     22222


Q ss_pred             hcc----CCcEEEEEEccCCCEEEEec
Q 043707          321 LKQ----ENAITALAVNQESAVVYCGS  343 (347)
Q Consensus       321 ~~h----~~~V~~l~~~p~~~~l~sgs  343 (347)
                      ..|    ...|..-..+++.++++..|
T Consensus       140 dR~~~L~~~QIInY~~d~~~kW~~l~G  166 (327)
T d1utca2         140 DRHSSLAGCQIINYRTDAKQKWLLLTG  166 (327)
T ss_dssp             ECCGGGTTCEEEEEEECTTSCEEEEEE
T ss_pred             hhcccccCceEEEEEECCCCCEEEEEe
Confidence            222    45788888889888877654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=89.90  E-value=4.3  Score=33.26  Aligned_cols=100  Identities=11%  Similarity=0.001  Sum_probs=54.7

Q ss_pred             CeeEEEEcCCCCEEEEEeC---------------CCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCc
Q 043707          237 AVSCLSLNAEQGLLYSGSW---------------DKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGT  299 (347)
Q Consensus       237 ~V~~l~~~~~~~~l~s~s~---------------dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~  299 (347)
                      ..+.+++..++.+++|-..               -++-.+|....++...... .-...+.|+++||+  ++++-...++
T Consensus       151 ~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~-~l~~pNGI~~s~d~~~lyVa~t~~~~  229 (340)
T d1v04a_         151 SVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE-GFDFANGINISPDGKYVYIAELLAHK  229 (340)
T ss_dssp             SEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEE-EESSEEEEEECTTSSEEEEEEGGGTE
T ss_pred             CccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcC-CCCccceeEECCCCCEEEEEeCCCCe
Confidence            4567777777777776311               1233444443333322222 23457899999987  5556677899


Q ss_pred             EEEEEcccCCccceeeehhhhhccCCcEEEEEEccC-CCEEEE
Q 043707          300 VKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQE-SAVVYC  341 (347)
Q Consensus       300 I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~-~~~l~s  341 (347)
                      |++|++...+...   ..... .-....-.+.+.++ |.+.+.
T Consensus       230 i~~y~~~~~~~l~---~~~~~-~l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         230 IHVYEKHANWTLT---PLRVL-SFDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             EEEEEECTTSCEE---EEEEE-ECSSEEEEEEECTTTCCEEEE
T ss_pred             EEEEEeCCCcccc---eEEEe-cCCCCCCccEEecCCCEEEEE
Confidence            9999987433211   11111 12334567777654 444433

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=89.88  E-value=2.3  Score=35.06  Aligned_cols=69  Identities=13%  Similarity=0.163  Sum_probs=43.7

Q ss_pred             eeEEEEcCCCCEEEEEeCC-CcEEEEeCCCCEEEEE--EecCCCcEEEEEeCCCC-EEEEEeCC------CcEEEEEccc
Q 043707          238 VSCLSLNAEQGLLYSGSWD-KTLKVWRISDCKCLES--INAHDDAINSVVAGFDS-LVFTGSAD------GTVKVWRREL  307 (347)
Q Consensus       238 V~~l~~~~~~~~l~s~s~d-g~i~vwdl~~~~~~~~--~~~h~~~v~~i~~~~~~-~l~s~~~d------g~I~vwd~~~  307 (347)
                      ....++.+++.+++.|+.+ ..+.+||..+..-...  +...... ...+..+|+ +++.|+.+      ..+.+||...
T Consensus        78 ~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~-~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3          78 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGY-QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSS-CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             eeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccc-cceeeecCCceeeeccccccccccceeeeecCCC
Confidence            4456788899999988765 5799999987654321  1111122 234555676 55666542      3688999864

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.62  E-value=0.74  Score=41.36  Aligned_cols=32  Identities=19%  Similarity=0.267  Sum_probs=28.0

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCEEEEEEecC
Q 043707          245 AEQGLLYSGSWDKTLKVWRISDCKCLESINAH  276 (347)
Q Consensus       245 ~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h  276 (347)
                      ..+.+++.|+.||.++.+|.++|+.+-+++..
T Consensus       495 tagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~  526 (582)
T d1flga_         495 TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG  526 (582)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             EcCCeEEEeCCCCeEEEEECCCCcEeEEEECC
Confidence            45778899999999999999999999888743

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=89.33  E-value=2.8  Score=37.52  Aligned_cols=54  Identities=17%  Similarity=0.129  Sum_probs=36.4

Q ss_pred             CcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCc
Q 043707          257 KTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGK  310 (347)
Q Consensus       257 g~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~  310 (347)
                      |.|.-||+.+++.+-+................+++++|..||.++.+|.++++.
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~  506 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDL  506 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcE
Confidence            578889999998876554221111111112356888999999999999998764

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.47  E-value=6.6  Score=33.10  Aligned_cols=94  Identities=12%  Similarity=0.136  Sum_probs=55.5

Q ss_pred             CeeEEEEeCCCCEEEEE-eCCC----cEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCC
Q 043707          163 LVKAIIITGDSNKIFTG-HQDG----KIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA  237 (347)
Q Consensus       163 ~V~~l~~sp~~~~l~s~-~~Dg----~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  237 (347)
                      .+..++++|++++++-+ +.+|    .|++.|+.+++.......                                 ...
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~---------------------------------~~~  172 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE---------------------------------RVK  172 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE---------------------------------EEC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc---------------------------------ccc
Confidence            45567889999987743 3333    699999999863321110                                 011


Q ss_pred             eeEEEEcCCCCEEEEEeCC----------------CcEEEEeCCCCE--EEEEEecCC--CcEEEEEeCCCC
Q 043707          238 VSCLSLNAEQGLLYSGSWD----------------KTLKVWRISDCK--CLESINAHD--DAINSVVAGFDS  289 (347)
Q Consensus       238 V~~l~~~~~~~~l~s~s~d----------------g~i~vwdl~~~~--~~~~~~~h~--~~v~~i~~~~~~  289 (347)
                      ...++|.+++..|+-...|                ..+..|.+.+..  ....+....  ..+..+..+.++
T Consensus       173 ~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~  244 (430)
T d1qfma1         173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG  244 (430)
T ss_dssp             SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS
T ss_pred             ccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCc
Confidence            2357899988876654332                247777776642  223333332  345666778887

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=87.22  E-value=2.4  Score=34.93  Aligned_cols=21  Identities=10%  Similarity=0.205  Sum_probs=16.6

Q ss_pred             CCcEEEEEEccCCCEEEEecC
Q 043707          324 ENAITALAVNQESAVVYCGSS  344 (347)
Q Consensus       324 ~~~V~~l~~~p~~~~l~sgs~  344 (347)
                      -...+.|+++|++++|+.+..
T Consensus       205 l~~pNGI~~s~d~~~lyVa~t  225 (340)
T d1v04a_         205 FDFANGINISPDGKYVYIAEL  225 (340)
T ss_dssp             ESSEEEEEECTTSSEEEEEEG
T ss_pred             CCccceeEECCCCCEEEEEeC
Confidence            346789999999998887653

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.14  E-value=6.3  Score=30.77  Aligned_cols=154  Identities=14%  Similarity=0.091  Sum_probs=88.7

Q ss_pred             ccccEEEEeec--CCEEEEe-cCCCcEEEEeCCCc-ceee-ecCCCCeeEEEEeCCCCEEE-EEeCCCcEEEEecCCCCC
Q 043707          122 KEGHIYSLAAS--GDLLYTG-SDSKNIRVWKNLKE-FSGF-KSNSGLVKAIIITGDSNKIF-TGHQDGKIRIWKVSRKNP  195 (347)
Q Consensus       122 h~~~V~~l~~~--~~~l~tg-~~dg~I~vwd~~~~-~~~~-~~h~~~V~~l~~sp~~~~l~-s~~~Dg~I~vwd~~~~~~  195 (347)
                      +...+.+++++  .+.|+-. ..++.|+..+.... ...+ ......+.+|++..-+..|+ +-...+.|.+.+++....
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~  113 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR  113 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE
Confidence            33445666654  5555544 55677887775422 2222 22335788999987555655 445667899998876542


Q ss_pred             ceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCC-CcEEEE--eCCCCEEEEE
Q 043707          196 SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWD-KTLKVW--RISDCKCLES  272 (347)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d-g~i~vw--dl~~~~~~~~  272 (347)
                      .....                                ........++++|...+|+-.... +..+||  ++........
T Consensus       114 ~~l~~--------------------------------~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i  161 (263)
T d1npea_         114 RVLFD--------------------------------TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL  161 (263)
T ss_dssp             EEEEC--------------------------------SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE
T ss_pred             EEEec--------------------------------ccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceee
Confidence            11100                                123457789999987777755433 233444  5543322222


Q ss_pred             EecCCCcEEEEEeCCCC-EE-EEEeCCCcEEEEEccc
Q 043707          273 INAHDDAINSVVAGFDS-LV-FTGSADGTVKVWRREL  307 (347)
Q Consensus       273 ~~~h~~~v~~i~~~~~~-~l-~s~~~dg~I~vwd~~~  307 (347)
                      ....-.....|++.+.+ .| .+-...+.|...++..
T Consensus       162 ~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g  198 (263)
T d1npea_         162 AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ  198 (263)
T ss_dssp             ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE
T ss_pred             eeecccccceEEEeecCcEEEEEeCCCCEEEEEECCC
Confidence            23333456788887654 44 4445678888888863

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.31  E-value=7.9  Score=31.10  Aligned_cols=134  Identities=10%  Similarity=0.145  Sum_probs=80.3

Q ss_pred             CCcEEEEeCCCc-ceeeecCCCCeeEEEEeCCC---CEEEEE---eCCCcEEEEecCCCCC---ceee---eeccccccc
Q 043707          142 SKNIRVWKNLKE-FSGFKSNSGLVKAIIITGDS---NKIFTG---HQDGKIRIWKVSRKNP---SVHK---RVGSLPTFK  208 (347)
Q Consensus       142 dg~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~---~~l~s~---~~Dg~I~vwd~~~~~~---~~~~---~~~~~~~~~  208 (347)
                      .|.+.+|...+. .+.+++|.+.-..+.+..+.   +.|+-+   ...++++|-++.....   ...+   .+...|.  
T Consensus       175 ~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppe--  252 (327)
T d1utca2         175 VGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE--  252 (327)
T ss_dssp             EEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTT--
T ss_pred             eEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCcc--
Confidence            367889987654 55677775544444332211   122222   2236888888876321   1111   1111111  


Q ss_pred             ceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCC
Q 043707          209 DYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD  288 (347)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~  288 (347)
                                              ...+---+|..++....++.-+.-|.|++||+.++.++..-+--.+.|..-+-..+
T Consensus       253 ------------------------a~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~  308 (327)
T d1utca2         253 ------------------------AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEA  308 (327)
T ss_dssp             ------------------------CTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETT
T ss_pred             ------------------------ccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCC
Confidence                                    12344567888998899999999999999999999999887766666654443333


Q ss_pred             -CEEEEEeCCCcEE
Q 043707          289 -SLVFTGSADGTVK  301 (347)
Q Consensus       289 -~~l~s~~~dg~I~  301 (347)
                       +=+++...+|.|.
T Consensus       309 ~~Gi~~VNr~GqVl  322 (327)
T d1utca2         309 TAGIIGVNRKGQVL  322 (327)
T ss_dssp             TTEEEEEETTSEEE
T ss_pred             CceEEEECCCCeEE
Confidence             3444444666654

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=84.62  E-value=3.3  Score=36.81  Aligned_cols=30  Identities=27%  Similarity=0.291  Sum_probs=26.6

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCEEEEEEec
Q 043707          246 EQGLLYSGSWDKTLKVWRISDCKCLESINA  275 (347)
Q Consensus       246 ~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~  275 (347)
                      .+.+++.|+.||.++.+|.++|+.+-+++.
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l  503 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEEEEEEC
Confidence            467888999999999999999999988864

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.82  E-value=11  Score=29.36  Aligned_cols=154  Identities=8%  Similarity=0.087  Sum_probs=87.1

Q ss_pred             ccccEEEEeec--CCEEEEe-cCCCcEEEEeCCC-----ccee-eecCCCCeeEEEEeCCCCEEEEE-eCCCcEEEEecC
Q 043707          122 KEGHIYSLAAS--GDLLYTG-SDSKNIRVWKNLK-----EFSG-FKSNSGLVKAIIITGDSNKIFTG-HQDGKIRIWKVS  191 (347)
Q Consensus       122 h~~~V~~l~~~--~~~l~tg-~~dg~I~vwd~~~-----~~~~-~~~h~~~V~~l~~sp~~~~l~s~-~~Dg~I~vwd~~  191 (347)
                      ....+.+++++  .+.|+-. ..++.|+..++..     .... ....-..+.+|++.+-+..|+.+ ...+.|.+.+++
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence            33455667664  4555544 4556666555321     1122 22223457789998755555444 566789999887


Q ss_pred             CCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC--CCcEEEEeCCCCEE
Q 043707          192 RKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW--DKTLKVWRISDCKC  269 (347)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--dg~i~vwdl~~~~~  269 (347)
                      ........                                .........++++|...+|+-...  .+.|.-.++.....
T Consensus       108 g~~~~~~~--------------------------------~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~  155 (266)
T d1ijqa1         108 GVKRKTLF--------------------------------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI  155 (266)
T ss_dssp             SSSEEEEE--------------------------------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred             CceEEEEE--------------------------------cCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce
Confidence            65421111                                123455778999987666665543  34566666654333


Q ss_pred             EEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEccc
Q 043707          270 LESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRREL  307 (347)
Q Consensus       270 ~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~  307 (347)
                      .......-...+.+++.+.+  +..+-...+.|...++..
T Consensus       156 ~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG  195 (266)
T d1ijqa1         156 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (266)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             ecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCC
Confidence            33333333557888888754  444446678888888863