Citrus Sinensis ID: 043735
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 336 | 2.2.26 [Sep-21-2011] | |||||||
| P23586 | 522 | Sugar transport protein 1 | yes | no | 1.0 | 0.643 | 0.836 | 1e-165 | |
| Q41144 | 523 | Sugar carrier protein C O | N/A | no | 1.0 | 0.642 | 0.825 | 1e-162 | |
| O65413 | 508 | Sugar transport protein 1 | no | no | 0.994 | 0.657 | 0.788 | 1e-152 | |
| Q9FMX3 | 514 | Sugar transport protein 1 | no | no | 0.994 | 0.649 | 0.635 | 1e-122 | |
| Q39228 | 514 | Sugar transport protein 4 | no | no | 0.961 | 0.628 | 0.626 | 1e-118 | |
| Q9SX48 | 517 | Sugar transport protein 9 | no | no | 0.943 | 0.613 | 0.648 | 1e-115 | |
| Q9LT15 | 514 | Sugar transport protein 1 | no | no | 0.943 | 0.616 | 0.628 | 1e-115 | |
| Q94AZ2 | 526 | Sugar transport protein 1 | no | no | 1.0 | 0.638 | 0.572 | 1e-111 | |
| Q07423 | 510 | Hexose carrier protein HE | N/A | no | 0.994 | 0.654 | 0.576 | 1e-109 | |
| Q8L7R8 | 514 | Sugar transport protein 3 | no | no | 0.946 | 0.618 | 0.585 | 1e-103 |
| >sp|P23586|STP1_ARATH Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 582 bits (1500), Expect = e-165, Method: Compositional matrix adjust.
Identities = 281/336 (83%), Positives = 308/336 (91%)
Query: 1 MPAAGVFDNGNGKGYPGKLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPS 60
MPA G K YPGKLTPFV TC+VAAMGGLIFGYDIGISGGVTSMPSFLKRFFPS
Sbjct: 1 MPAGGFVVGDGQKAYPGKLTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPS 60
Query: 61 VYRKQQANSSTNQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLF 120
VYRKQQ ++STNQYCQY+S TLT+FTSSLYLAAL+SSLVAS+VTRKFGR+ SMLFGG+LF
Sbjct: 61 VYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGILF 120
Query: 121 FAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITI 180
AGALINGFA+ VWMLIVGR+LLGFGIGFANQ+VPLYLSEMAPYKYRGALNIGFQLSITI
Sbjct: 121 CAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSITI 180
Query: 181 GILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEARE 240
GIL+A VLNYFFAKIKGGWGWRLSLGGA+VPALIITIGSLVLPDTPNSMIERGQ +EA+
Sbjct: 181 GILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQHEEAKT 240
Query: 241 KLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGIN 300
KLR+IRGV+DV +EF+DLVAAS+ S+ +EHPW NLL+RKYRPHLTMA++IPFFQQLTGIN
Sbjct: 241 KLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVMIPFFQQLTGIN 300
Query: 301 VIMFYAPVLFNTIGFGNDASLMSAVITGLVNACATL 336
VIMFYAPVLFNTIGF DASLMSAV+TG VN ATL
Sbjct: 301 VIMFYAPVLFNTIGFTTDASLMSAVVTGSVNVAATL 336
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Major hexose transporter. Mediates an active uptake of hexoses, by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, fructose, xylose, mannose, galactose, fucose, 2-deoxyglucose and arabinose. Confers sensitivity to galactose in seedlings. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q41144|STC_RICCO Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1 | Back alignment and function description |
|---|
Score = 572 bits (1474), Expect = e-162, Method: Compositional matrix adjust.
Identities = 279/338 (82%), Positives = 310/338 (91%), Gaps = 2/338 (0%)
Query: 1 MPAAGVF--DNGNGKGYPGKLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFF 58
MPA G GN K YPG LT +VTVTC+VAAMGGLIFGYDIGISGGVTSM SFLK+FF
Sbjct: 1 MPAVGGIPPSGGNRKVYPGNLTLYVTVTCVVAAMGGLIFGYDIGISGGVTSMDSFLKKFF 60
Query: 59 PSVYRKQQANSSTNQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGV 118
PSVYRK++A+ S+NQYCQY+S+TLT+FTSSLYLAAL++SLVAS++TRKFGRK SMLFGGV
Sbjct: 61 PSVYRKKKADESSNQYCQYDSQTLTMFTSSLYLAALIASLVASTITRKFGRKLSMLFGGV 120
Query: 119 LFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSI 178
LF AGA+ING A+ VWMLI+GR+LLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSI
Sbjct: 121 LFCAGAIINGAAKAVWMLILGRILLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSI 180
Query: 179 TIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEA 238
TIGIL+ANVLNYFFAKIKGGWGWRLSLGGAMVPALIIT+GSLVLPDTPNSMIERGQ +EA
Sbjct: 181 TIGILVANVLNYFFAKIKGGWGWRLSLGGAMVPALIITVGSLVLPDTPNSMIERGQHEEA 240
Query: 239 REKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTG 298
R L+++RGV DVDEEF DLV ASE SK+VEHPW NLL+RKYRPHL+MAI IPFFQQLTG
Sbjct: 241 RAHLKRVRGVEDVDEEFTDLVHASEDSKKVEHPWRNLLQRKYRPHLSMAIAIPFFQQLTG 300
Query: 299 INVIMFYAPVLFNTIGFGNDASLMSAVITGLVNACATL 336
INVIMFYAPVLF+TIGFG+DA+LMSAVITGLVN AT+
Sbjct: 301 INVIMFYAPVLFDTIGFGSDAALMSAVITGLVNVFATM 338
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Ricinus communis (taxid: 3988) |
| >sp|O65413|STP12_ARATH Sugar transport protein 12 OS=Arabidopsis thaliana GN=STP12 PE=2 SV=1 | Back alignment and function description |
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Score = 538 bits (1386), Expect = e-152, Method: Compositional matrix adjust.
Identities = 265/336 (78%), Positives = 296/336 (88%), Gaps = 2/336 (0%)
Query: 1 MPAAGVFDNGNGKGYPGKLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPS 60
MP+ G+ K YPGKLT +VTVTCIVAAMGGLIFGYDIGISGGVT+M SF ++FFPS
Sbjct: 1 MPSVGIVIGDGKKEYPGKLTLYVTVTCIVAAMGGLIFGYDIGISGGVTTMDSFQQKFFPS 60
Query: 61 VYRKQQANSSTNQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLF 120
VY KQ+ + +NQYC+++S +LTLFTSSLYLAAL SSLVAS VTR+FGRK SML GGVLF
Sbjct: 61 VYEKQKKDHDSNQYCRFDSVSLTLFTSSLYLAALCSSLVASYVTRQFGRKISMLLGGVLF 120
Query: 121 FAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITI 180
AGAL+NGFA VWMLIVGRLLLGFGIGF NQSVPLYLSEMAPYKYRGALNIGFQLSITI
Sbjct: 121 CAGALLNGFATAVWMLIVGRLLLGFGIGFTNQSVPLYLSEMAPYKYRGALNIGFQLSITI 180
Query: 181 GILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEARE 240
GIL+ANVLN+FF+KI WGWRLSLGGA+VPALIIT+GSL+LPDTPNSMIERGQ A
Sbjct: 181 GILVANVLNFFFSKIS--WGWRLSLGGAVVPALIITVGSLILPDTPNSMIERGQFRLAEA 238
Query: 241 KLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGIN 300
KLRKIRGV+D+D+E NDL+ ASEASK VEHPW NLL+RKYRPHLTMAILIP FQQLTGIN
Sbjct: 239 KLRKIRGVDDIDDEINDLIIASEASKLVEHPWRNLLQRKYRPHLTMAILIPAFQQLTGIN 298
Query: 301 VIMFYAPVLFNTIGFGNDASLMSAVITGLVNACATL 336
VIMFYAPVLF TIGFG+DA+L+SAV+TGLVN AT+
Sbjct: 299 VIMFYAPVLFQTIGFGSDAALISAVVTGLVNVGATV 334
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMX3|STP11_ARATH Sugar transport protein 11 OS=Arabidopsis thaliana GN=STP11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 438 bits (1126), Expect = e-122, Method: Compositional matrix adjust.
Identities = 214/337 (63%), Positives = 267/337 (79%), Gaps = 3/337 (0%)
Query: 3 AAGVF--DNGNGKGYPGKLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPS 60
A G F ++G+G Y G++T FV +TCIVAAMGGL+FGYDIGISGGV SM FL +FFP
Sbjct: 2 AGGAFIDESGHGGDYEGRVTAFVMITCIVAAMGGLLFGYDIGISGGVISMEDFLTKFFPD 61
Query: 61 VYRK-QQANSSTNQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVL 119
V R+ Q +YC+Y++E LTLFTSSLYLAAL +S +AS++TR FGRK SM+ G +
Sbjct: 62 VLRQMQNKRGRETEYCKYDNELLTLFTSSLYLAALFASFLASTITRLFGRKVSMVIGSLA 121
Query: 120 FFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSIT 179
F +GAL+NG A + MLI+GRL LG G+GFANQSVPLYLSEMAP K RGALNIGFQL+IT
Sbjct: 122 FLSGALLNGLAINLEMLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRGALNIGFQLAIT 181
Query: 180 IGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEAR 239
IGIL AN++NY K++ G GWRLSLG A VPA+++ +G LPDTPNS++ERG +++A+
Sbjct: 182 IGILAANIVNYVTPKLQNGIGWRLSLGLAGVPAVMMLVGCFFLPDTPNSILERGNKEKAK 241
Query: 240 EKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGI 299
E L+KIRG +V+ EFN+L A EA+K+V+HPW N+++ +YRP LT IPFFQQLTGI
Sbjct: 242 EMLQKIRGTMEVEHEFNELCNACEAAKKVKHPWTNIMQARYRPQLTFCTFIPFFQQLTGI 301
Query: 300 NVIMFYAPVLFNTIGFGNDASLMSAVITGLVNACATL 336
NVIMFYAPVLF TIGFGNDASL+SAVITGLVN +T+
Sbjct: 302 NVIMFYAPVLFKTIGFGNDASLISAVITGLVNVLSTI 338
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, galactose, mannose, xylose and 3-O-methylglucose, but not fructose and ribose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q39228|STP4_ARATH Sugar transport protein 4 OS=Arabidopsis thaliana GN=STP4 PE=1 SV=1 | Back alignment and function description |
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Score = 426 bits (1096), Expect = e-118, Method: Compositional matrix adjust.
Identities = 203/324 (62%), Positives = 257/324 (79%), Gaps = 1/324 (0%)
Query: 13 KGYPGKLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQANSSTN 72
+ Y KLTP V VTC + A GGLIFGYD+GISGGVTSM FL+ FFP VY+K ++ + N
Sbjct: 13 RNYNYKLTPKVFVTCFIGAFGGLIFGYDLGISGGVTSMEPFLEEFFPYVYKKMKS-AHEN 71
Query: 73 QYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQG 132
+YC+++S+ LTLFTSSLY+AAL+SSL AS++TR FGRK SM GG FF G+ NGFAQ
Sbjct: 72 EYCRFDSQLLTLFTSSLYVAALVSSLFASTITRVFGRKWSMFLGGFTFFIGSAFNGFAQN 131
Query: 133 VWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFF 192
+ ML++GR+LLGFG+GFANQSVP+YLSEMAP RGA N GFQ++I GI++A ++NYF
Sbjct: 132 IAMLLIGRILLGFGVGFANQSVPVYLSEMAPPNLRGAFNNGFQVAIIFGIVVATIINYFT 191
Query: 193 AKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEAREKLRKIRGVNDVD 252
A++KG GWR+SLG A VPA++I IG+L+LPDTPNS+IERG +EA+E L+ IRG N+VD
Sbjct: 192 AQMKGNIGWRISLGLACVPAVMIMIGALILPDTPNSLIERGYTEEAKEMLQSIRGTNEVD 251
Query: 253 EEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFNT 312
EEF DL+ ASE SKQV+HPW N++ +YRP L M IPFFQQLTGINVI FYAPVLF T
Sbjct: 252 EEFQDLIDASEESKQVKHPWKNIMLPRYRPQLIMTCFIPFFQQLTGINVITFYAPVLFQT 311
Query: 313 IGFGNDASLMSAVITGLVNACATL 336
+GFG+ ASL+SA++TG++ T
Sbjct: 312 LGFGSKASLLSAMVTGIIELLCTF 335
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, methylglucose, galactose, xylose and mannose, but not fructose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX48|STP9_ARATH Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 416 bits (1068), Expect = e-115, Method: Compositional matrix adjust.
Identities = 207/319 (64%), Positives = 253/319 (79%), Gaps = 2/319 (0%)
Query: 19 LTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQANSSTNQYCQYN 78
+T FV +TCIVAAMGGL+FGYD+GISGGVTSM FL +FFP V ++ YC+++
Sbjct: 21 VTVFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLSKFFPEVDKQMHEARRETAYCKFD 80
Query: 79 SETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIV 138
++ L LFTSSLYLAAL SS VAS+VTRK+GRK SM GGV F G+L N FA V MLIV
Sbjct: 81 NQLLQLFTSSLYLAALASSFVASAVTRKYGRKISMFVGGVAFLIGSLFNAFATNVAMLIV 140
Query: 139 GRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGG 198
GRLLLG G+GFANQS P+YLSEMAP K RGALNIGFQ++ITIGILIAN++NY +++
Sbjct: 141 GRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILIANLINYGTSQMAKN 200
Query: 199 WGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEAREKLRKIRGVNDVDEEFNDL 258
GWR+SLG A VPA+I+ IGS VLPDTPNSM+ERG+ ++ARE L+KIRG ++VDEEF DL
Sbjct: 201 -GWRVSLGLAAVPAVIMVIGSFVLPDTPNSMLERGKYEQAREMLQKIRGADNVDEEFQDL 259
Query: 259 VAASEASKQVEHPWGNLLKR-KYRPHLTMAILIPFFQQLTGINVIMFYAPVLFNTIGFGN 317
A EA+K+V++PW N+ ++ KYRP L IPFFQQ+TGINVIMFYAPVLF T+GF +
Sbjct: 260 CDACEAAKKVDNPWKNIFQQAKYRPALVFCSAIPFFQQITGINVIMFYAPVLFKTLGFAD 319
Query: 318 DASLMSAVITGLVNACATL 336
DASL+SAVITG VN +TL
Sbjct: 320 DASLISAVITGAVNVVSTL 338
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Mostly transports glucose, and barely galactose, xylose and mannose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LT15|STP10_ARATH Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 415 bits (1067), Expect = e-115, Method: Compositional matrix adjust.
Identities = 200/318 (62%), Positives = 253/318 (79%), Gaps = 1/318 (0%)
Query: 19 LTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQANSSTNQYCQYN 78
+T FV +TCIVAAMGGL+FGYD+GISGGVTSM FL +FFP V + + YC+++
Sbjct: 21 VTAFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLTKFFPQVESQMKKAKHDTAYCKFD 80
Query: 79 SETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIV 138
++ L LFTSSLYLAAL++S +AS +TRK GRK SM GG+ F GAL N FA V MLI+
Sbjct: 81 NQMLQLFTSSLYLAALVASFMASVITRKHGRKVSMFIGGLAFLIGALFNAFAVNVSMLII 140
Query: 139 GRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGG 198
GRLLLG G+GFANQS P+YLSEMAP K RGALNIGFQ++ITIGIL+AN++NY +K+
Sbjct: 141 GRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILVANLINYGTSKMAQH 200
Query: 199 WGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEAREKLRKIRGVNDVDEEFNDL 258
GWR+SLG A VPA+++ IGS +LPDTPNSM+ERG+ +EA++ L+KIRG ++VD EF DL
Sbjct: 201 -GWRVSLGLAAVPAVVMVIGSFILPDTPNSMLERGKNEEAKQMLKKIRGADNVDHEFQDL 259
Query: 259 VAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFNTIGFGND 318
+ A EA+K+VE+PW N+++ KYRP L IPFFQQ+TGINVIMFYAPVLF T+GFG+D
Sbjct: 260 IDAVEAAKKVENPWKNIMESKYRPALIFCSAIPFFQQITGINVIMFYAPVLFKTLGFGDD 319
Query: 319 ASLMSAVITGLVNACATL 336
A+LMSAVITG+VN +T
Sbjct: 320 AALMSAVITGVVNMLSTF 337
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94AZ2|STP13_ARATH Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 400 bits (1028), Expect = e-111, Method: Compositional matrix adjust.
Identities = 193/337 (57%), Positives = 257/337 (76%), Gaps = 1/337 (0%)
Query: 1 MPAAGVFDNGNGKGYPGKLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPS 60
M G + NG + K+TP V ++CI+AA GGL+FGYD+G+SGGVTSMP FL++FFP
Sbjct: 1 MTGGGFATSANGVEFEAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMPDFLEKFFPV 60
Query: 61 VYRKQQANSSTN-QYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVL 119
VYRK A + + YC+Y+++ L LFTSSLYLA L ++ AS TR GR+ +ML GV
Sbjct: 61 VYRKVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTMLIAGVF 120
Query: 120 FFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSIT 179
F G +N AQ + MLI GR+LLG G+GFANQ+VPL+LSE+AP + RG LNI FQL++T
Sbjct: 121 FIIGVALNAGAQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVT 180
Query: 180 IGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEAR 239
IGIL AN++NY AKIKGGWGWRLSLG A +PAL++T+G+L++ +TPNS++ERG+ DE +
Sbjct: 181 IGILFANLVNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNSLVERGRLDEGK 240
Query: 240 EKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGI 299
LR+IRG ++V+ EF DL+ AS +K+V+HP+ NLL+R+ RP L +A+ + FQQ TGI
Sbjct: 241 AVLRRIRGTDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRPQLVIAVALQIFQQCTGI 300
Query: 300 NVIMFYAPVLFNTIGFGNDASLMSAVITGLVNACATL 336
N IMFYAPVLF+T+GFG+DASL SAV+TG VN +TL
Sbjct: 301 NAIMFYAPVLFSTLGFGSDASLYSAVVTGAVNVLSTL 337
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q07423|HEX6_RICCO Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 393 bits (1010), Expect = e-109, Method: Compositional matrix adjust.
Identities = 193/335 (57%), Positives = 255/335 (76%), Gaps = 1/335 (0%)
Query: 3 AAGVFDNGNGKGYPGKLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVY 62
AAG+ G Y G++T FV ++C++AAMGG+IFGYDIG+SGGVTSM FLK+FFP VY
Sbjct: 2 AAGLAITSEGGQYNGRMTSFVALSCMMAAMGGVIFGYDIGVSGGVTSMDPFLKKFFPDVY 61
Query: 63 RKQQANSSTNQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFA 122
RK + ++ + YC+++S+ LT FTSSLY+A L++S ASSVTR FGRK S+L GG +F A
Sbjct: 62 RKMKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGRKPSILLGGXVFLA 121
Query: 123 GALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGI 182
A + G A V+MLI GR+LLG G+GFANQ+VPLYLSEMAP +YRGA+N GFQ S+ IG
Sbjct: 122 XAALGGAAVNVYMLIFGRVLLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSVGIGA 181
Query: 183 LIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDE-AREK 241
L AN++NY KI+GGWGWR+SL A VPA I+T G+L LP+TPNS+I+R E A+
Sbjct: 182 LSANLINYGTEKIEGGWGWRISLAMAAVPAAILTFGALFLPETPNSLIQRSNDHERAKLM 241
Query: 242 LRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINV 301
L+++RG DV E +DL+ AS S+ ++HP+ N+++RKYRP L MA+ IPFFQQ+TGINV
Sbjct: 242 LQRVRGTTDVQAELDDLIKASIISRTIQHPFKNIMRRKYRPQLVMAVAIPFFQQVTGINV 301
Query: 302 IMFYAPVLFNTIGFGNDASLMSAVITGLVNACATL 336
I FYAP+LF TIG ASL+S+++TGLV + +T
Sbjct: 302 IAFYAPILFRTIGLEESASLLSSIVTGLVGSASTF 336
|
Active uptake of hexoses. Probable glucose/hydrogen symport. Ricinus communis (taxid: 3988) |
| >sp|Q8L7R8|STP3_ARATH Sugar transport protein 3 OS=Arabidopsis thaliana GN=STP3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 375 bits (963), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/326 (58%), Positives = 241/326 (73%), Gaps = 8/326 (2%)
Query: 17 GKLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQAN-----SST 71
GK+T FV +C++AAMGG+IFGYDIG+SGGV SM FLKRFFP VY+ Q+ + +S
Sbjct: 18 GKITYFVVASCVMAAMGGVIFGYDIGVSGGVMSMGPFLKRFFPKVYKLQEEDRRRRGNSN 77
Query: 72 NQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQ 131
N YC +NS+ LT FTSSLY++ L+++L+ASSVTR +GRK S+ GGV F AGA + G AQ
Sbjct: 78 NHYCLFNSQLLTSFTSSLYVSGLIATLLASSVTRSWGRKPSIFLGGVSFLAGAALGGSAQ 137
Query: 132 GVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYF 191
V MLI+ RLLLG G+GFANQSVPLYLSEMAP KYRGA++ GFQL I IG L ANV+NY
Sbjct: 138 NVAMLIIARLLLGVGVGFANQSVPLYLSEMAPAKYRGAISNGFQLCIGIGFLSANVINYE 197
Query: 192 FAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIE-RGQRDEAREKLRKIRGVND 250
IK GWR+SL A +PA I+T+GSL LP+TPNS+I+ G + LR++RG ND
Sbjct: 198 TQNIKH--GWRISLATAAIPASILTLGSLFLPETPNSIIQTTGDVHKTELMLRRVRGTND 255
Query: 251 VDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLF 310
V +E DLV AS S + + LL+RKYRP L MA++IPFFQQ+TGINV+ FYAPVL+
Sbjct: 256 VQDELTDLVEASSGSDTDSNAFLKLLQRKYRPELVMALVIPFFQQVTGINVVAFYAPVLY 315
Query: 311 NTIGFGNDASLMSAVITGLVNACATL 336
T+GFG SLMS ++TG+V +TL
Sbjct: 316 RTVGFGESGSLMSTLVTGIVGTSSTL 341
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 336 | ||||||
| 30349804 | 523 | monosaccharide-H+ symporter [Datisca glo | 1.0 | 0.642 | 0.830 | 1e-164 | |
| 68271836 | 521 | hexose transporter 1 [Juglans regia] | 0.988 | 0.637 | 0.851 | 1e-164 | |
| 215271818 | 522 | hexose transporter 1 [Hevea brasiliensis | 1.0 | 0.643 | 0.842 | 1e-164 | |
| 68271838 | 508 | hexose transporter 2 [Juglans regia] | 0.988 | 0.653 | 0.851 | 1e-164 | |
| 21618276 | 522 | glucose transporter [Arabidopsis thalian | 1.0 | 0.643 | 0.836 | 1e-164 | |
| 15220330 | 522 | sugar transporter 1 [Arabidopsis thalian | 1.0 | 0.643 | 0.836 | 1e-164 | |
| 16520 | 522 | glucose transporter [Arabidopsis thalian | 1.0 | 0.643 | 0.836 | 1e-163 | |
| 297843956 | 522 | hypothetical protein ARALYDRAFT_888424 [ | 0.997 | 0.641 | 0.839 | 1e-163 | |
| 3915039 | 523 | RecName: Full=Sugar carrier protein C gi | 1.0 | 0.642 | 0.825 | 1e-160 | |
| 255567421 | 523 | sugar transporter, putative [Ricinus com | 1.0 | 0.642 | 0.825 | 1e-160 |
| >gi|30349804|emb|CAD30830.1| monosaccharide-H+ symporter [Datisca glomerata] | Back alignment and taxonomy information |
|---|
Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust.
Identities = 280/337 (83%), Positives = 314/337 (93%), Gaps = 1/337 (0%)
Query: 1 MPAAG-VFDNGNGKGYPGKLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFP 59
MPA G + G+ K YPG LTP+VT+TCIVAAMGGLIFGYDIGISGGVTSM SFLK+FFP
Sbjct: 1 MPAVGGIVVGGSKKEYPGNLTPYVTITCIVAAMGGLIFGYDIGISGGVTSMDSFLKKFFP 60
Query: 60 SVYRKQQANSSTNQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVL 119
+VYRK++ +S+TNQYCQY+S+TLT+FTSSLYLAALL+S+VAS++TRKFGR+ SMLFGG+L
Sbjct: 61 AVYRKKELDSTTNQYCQYDSQTLTMFTSSLYLAALLASIVASTITRKFGRRLSMLFGGIL 120
Query: 120 FFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSIT 179
F AGA+INGFAQ VWMLI+GR+ LGFGIGF+NQSVPLYLSEMAPYKYRGALNIGFQLSIT
Sbjct: 121 FCAGAIINGFAQAVWMLILGRMFLGFGIGFSNQSVPLYLSEMAPYKYRGALNIGFQLSIT 180
Query: 180 IGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEAR 239
IGIL+ANVLNYFFAKI+GGWGWRLSLGGAMVPALIIT+GSL+LPDTPNS+IERG RDEAR
Sbjct: 181 IGILVANVLNYFFAKIRGGWGWRLSLGGAMVPALIITVGSLLLPDTPNSLIERGNRDEAR 240
Query: 240 EKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGI 299
KL+++RGV+DVDEEFNDLVAASE SKQVEHPW NLL+RKYRPHL MAILIPFFQQLTGI
Sbjct: 241 SKLQRVRGVDDVDEEFNDLVAASEESKQVEHPWTNLLRRKYRPHLAMAILIPFFQQLTGI 300
Query: 300 NVIMFYAPVLFNTIGFGNDASLMSAVITGLVNACATL 336
NVIMFYAPVLFNTIGFG+DASLMSAVITG VN TL
Sbjct: 301 NVIMFYAPVLFNTIGFGSDASLMSAVITGCVNVAGTL 337
|
Source: Datisca glomerata Species: Datisca glomerata Genus: Datisca Family: Datiscaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|68271836|gb|AAY89231.1| hexose transporter 1 [Juglans regia] | Back alignment and taxonomy information |
|---|
Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust.
Identities = 286/336 (85%), Positives = 314/336 (93%), Gaps = 4/336 (1%)
Query: 1 MPAAGVFDNGNGKGYPGKLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPS 60
+PA GV GK YPG LTP+VTVTCIVAAMGGLIFGYDIGISGGVTSM FLK+FFPS
Sbjct: 7 VPAGGV----PGKAYPGNLTPYVTVTCIVAAMGGLIFGYDIGISGGVTSMDPFLKKFFPS 62
Query: 61 VYRKQQANSSTNQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLF 120
VYRK+ + STNQYCQY+SETLT+FTSSLYLAALLSS+VAS+VTRKFGRK SMLFGGVLF
Sbjct: 63 VYRKKNEDKSTNQYCQYDSETLTMFTSSLYLAALLSSIVASTVTRKFGRKLSMLFGGVLF 122
Query: 121 FAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITI 180
AGA++NGFA+ VWMLIVGR+LLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITI
Sbjct: 123 CAGAILNGFAKAVWMLIVGRILLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITI 182
Query: 181 GILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEARE 240
GIL+ANVLNYFFAKI+GGWGWRLSLGGAMVPALIIT+GSLVLPDTPNSMIERGQ DEA+E
Sbjct: 183 GILVANVLNYFFAKIEGGWGWRLSLGGAMVPALIITVGSLVLPDTPNSMIERGQHDEAKE 242
Query: 241 KLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGIN 300
KL++IRGV+DV+EEF DLVAASEAS+ VE+PW NLL+RKYRPHL+MAILIPFFQQLTGIN
Sbjct: 243 KLKRIRGVDDVEEEFCDLVAASEASQLVENPWRNLLQRKYRPHLSMAILIPFFQQLTGIN 302
Query: 301 VIMFYAPVLFNTIGFGNDASLMSAVITGLVNACATL 336
VIMFYAPVLFNTIGFG+DASLMSAVITG+VN AT+
Sbjct: 303 VIMFYAPVLFNTIGFGSDASLMSAVITGIVNVGATM 338
|
Source: Juglans regia Species: Juglans regia Genus: Juglans Family: Juglandaceae Order: Fagales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|215271818|emb|CAN87006.1| hexose transporter 1 [Hevea brasiliensis] gi|218047177|emb|CAR92125.1| putative hexose transporter protein [Hevea brasiliensis] | Back alignment and taxonomy information |
|---|
Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust.
Identities = 284/337 (84%), Positives = 313/337 (92%), Gaps = 1/337 (0%)
Query: 1 MPAAGVFDNGNGK-GYPGKLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFP 59
MPA G GNGK YPG LT +VTVTCIVAAMGGLIFGYDIGISGGVTSM SFLK+FFP
Sbjct: 1 MPAVGGIATGNGKREYPGNLTLYVTVTCIVAAMGGLIFGYDIGISGGVTSMDSFLKKFFP 60
Query: 60 SVYRKQQANSSTNQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVL 119
SVYRK++ +S++NQYCQY+S+TLT+FTSSLYLAAL++SLVAS +TRKFGRK SMLFGGVL
Sbjct: 61 SVYRKKEEDSTSNQYCQYDSQTLTMFTSSLYLAALVASLVASWITRKFGRKLSMLFGGVL 120
Query: 120 FFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSIT 179
FFAGA+ING A+ VWMLI+GR+LLGFGIGFANQSVPLYLSEMAPY+YRGALNIGFQLSIT
Sbjct: 121 FFAGAIINGLAKAVWMLILGRILLGFGIGFANQSVPLYLSEMAPYRYRGALNIGFQLSIT 180
Query: 180 IGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEAR 239
IGIL+ANVLNYFFAKI GGWGWRLSLGGAMVPALIIT+GSLVLPDTPNSMIERGQ +EAR
Sbjct: 181 IGILVANVLNYFFAKIHGGWGWRLSLGGAMVPALIITVGSLVLPDTPNSMIERGQYEEAR 240
Query: 240 EKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGI 299
+L+++RGV+DVDEEFNDLV ASE SK+VEHPW NLL+RKYRPHLTMAI IPFFQQLTGI
Sbjct: 241 SQLKRVRGVHDVDEEFNDLVLASEESKKVEHPWRNLLQRKYRPHLTMAIAIPFFQQLTGI 300
Query: 300 NVIMFYAPVLFNTIGFGNDASLMSAVITGLVNACATL 336
NVIMFYAPVLFNTIGFGNDASLMSAVITGLVN AT+
Sbjct: 301 NVIMFYAPVLFNTIGFGNDASLMSAVITGLVNVFATM 337
|
Source: Hevea brasiliensis Species: Hevea brasiliensis Genus: Hevea Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|68271838|gb|AAY89232.1| hexose transporter 2 [Juglans regia] | Back alignment and taxonomy information |
|---|
Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust.
Identities = 286/336 (85%), Positives = 314/336 (93%), Gaps = 4/336 (1%)
Query: 1 MPAAGVFDNGNGKGYPGKLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPS 60
+PA GV GK YPG LTP+VTVTCIVAAMGGLIFGYDIGISGGVTSM FLK+FFPS
Sbjct: 7 VPAGGV----PGKAYPGNLTPYVTVTCIVAAMGGLIFGYDIGISGGVTSMDPFLKKFFPS 62
Query: 61 VYRKQQANSSTNQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLF 120
VYRK+ + STNQYCQY+SETLT+FTSSLYLAALLSS+VAS+VTRKFGRK SMLFGGVLF
Sbjct: 63 VYRKKNEDKSTNQYCQYDSETLTMFTSSLYLAALLSSIVASTVTRKFGRKLSMLFGGVLF 122
Query: 121 FAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITI 180
AGA++NGFA+ VWMLIVGR+LLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITI
Sbjct: 123 CAGAILNGFAKAVWMLIVGRILLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITI 182
Query: 181 GILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEARE 240
GIL+ANVLNYFFAKI+GGWGWRLSLGGAMVPALIIT+GSLVLPDTPNSMIERGQ DEA+E
Sbjct: 183 GILVANVLNYFFAKIEGGWGWRLSLGGAMVPALIITVGSLVLPDTPNSMIERGQHDEAKE 242
Query: 241 KLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGIN 300
KL++IRGV+DV+EEF DLVAASEAS+ VE+PW NLL+RKYRPHL+MAILIPFFQQLTGIN
Sbjct: 243 KLKRIRGVDDVEEEFCDLVAASEASQLVENPWRNLLQRKYRPHLSMAILIPFFQQLTGIN 302
Query: 301 VIMFYAPVLFNTIGFGNDASLMSAVITGLVNACATL 336
VIMFYAPVLFNTIGFG+DASLMSAVITG+VN AT+
Sbjct: 303 VIMFYAPVLFNTIGFGSDASLMSAVITGIVNVGATM 338
|
Source: Juglans regia Species: Juglans regia Genus: Juglans Family: Juglandaceae Order: Fagales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21618276|gb|AAM67326.1| glucose transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust.
Identities = 281/336 (83%), Positives = 308/336 (91%)
Query: 1 MPAAGVFDNGNGKGYPGKLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPS 60
MPA G K YPGKLTPFV TC+VAAMGGLIFGYDIGISGGVTSMPSFLKRFFPS
Sbjct: 1 MPAGGFVVGDGQKAYPGKLTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPS 60
Query: 61 VYRKQQANSSTNQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLF 120
VYRKQQ ++STNQYCQY+S TLT+FTSSLYLAAL+SSLVAS+VTRKFGR+ SMLFGG+LF
Sbjct: 61 VYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGILF 120
Query: 121 FAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITI 180
AGALINGFA+ VWMLIVGR+LLGFGIGFANQ+VPLYLSEMAPYKYRGALNIGFQLSITI
Sbjct: 121 CAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSITI 180
Query: 181 GILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEARE 240
GIL+A VLNYFFAKIKGGWGWRLSLGGA+VPALIITIGSLVLPDTPNSMIERGQ +EA+
Sbjct: 181 GILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQHEEAKT 240
Query: 241 KLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGIN 300
KLR+IRGV+DV +EF+DLVAAS+ S+ +EHPW NLL+RKYRPHLTMA++IPFFQQLTGIN
Sbjct: 241 KLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVMIPFFQQLTGIN 300
Query: 301 VIMFYAPVLFNTIGFGNDASLMSAVITGLVNACATL 336
VIMFYAPVLFNTIGF DASLMSAV+TG VN ATL
Sbjct: 301 VIMFYAPVLFNTIGFTTDASLMSAVVTGSVNVAATL 336
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15220330|ref|NP_172592.1| sugar transporter 1 [Arabidopsis thaliana] gi|21542458|sp|P23586.2|STP1_ARATH RecName: Full=Sugar transport protein 1; AltName: Full=Glucose transporter; AltName: Full=Hexose transporter 1 gi|5734730|gb|AAD49995.1|AC007259_8 glucose transporter [Arabidopsis thaliana] gi|15809962|gb|AAL06908.1| At1g11260/T28P6_18 [Arabidopsis thaliana] gi|16604673|gb|AAL24129.1| putative glucose transporter protein [Arabidopsis thaliana] gi|22136870|gb|AAM91779.1| putative glucose transporter protein [Arabidopsis thaliana] gi|332190584|gb|AEE28705.1| sugar transporter 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 582 bits (1500), Expect = e-164, Method: Compositional matrix adjust.
Identities = 281/336 (83%), Positives = 308/336 (91%)
Query: 1 MPAAGVFDNGNGKGYPGKLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPS 60
MPA G K YPGKLTPFV TC+VAAMGGLIFGYDIGISGGVTSMPSFLKRFFPS
Sbjct: 1 MPAGGFVVGDGQKAYPGKLTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPS 60
Query: 61 VYRKQQANSSTNQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLF 120
VYRKQQ ++STNQYCQY+S TLT+FTSSLYLAAL+SSLVAS+VTRKFGR+ SMLFGG+LF
Sbjct: 61 VYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGILF 120
Query: 121 FAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITI 180
AGALINGFA+ VWMLIVGR+LLGFGIGFANQ+VPLYLSEMAPYKYRGALNIGFQLSITI
Sbjct: 121 CAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSITI 180
Query: 181 GILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEARE 240
GIL+A VLNYFFAKIKGGWGWRLSLGGA+VPALIITIGSLVLPDTPNSMIERGQ +EA+
Sbjct: 181 GILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQHEEAKT 240
Query: 241 KLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGIN 300
KLR+IRGV+DV +EF+DLVAAS+ S+ +EHPW NLL+RKYRPHLTMA++IPFFQQLTGIN
Sbjct: 241 KLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVMIPFFQQLTGIN 300
Query: 301 VIMFYAPVLFNTIGFGNDASLMSAVITGLVNACATL 336
VIMFYAPVLFNTIGF DASLMSAV+TG VN ATL
Sbjct: 301 VIMFYAPVLFNTIGFTTDASLMSAVVTGSVNVAATL 336
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|16520|emb|CAA39037.1| glucose transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust.
Identities = 281/336 (83%), Positives = 308/336 (91%)
Query: 1 MPAAGVFDNGNGKGYPGKLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPS 60
MPA G K YPGKLTPFV TC+VAAMGGLIFGYDIGISGGVTSMPSFLKRFFPS
Sbjct: 1 MPAGGFVVGDGQKAYPGKLTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPS 60
Query: 61 VYRKQQANSSTNQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLF 120
VYRKQQ ++STNQYCQY+S TLT+FTSSLYLAAL+SSLVAS+VTRKFGR+ SMLFGG+LF
Sbjct: 61 VYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGILF 120
Query: 121 FAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITI 180
AGALINGFA+ VWMLIVGR+LLGFGIGFANQ+VPLYLSEMAPYKYRGALNIGFQLSITI
Sbjct: 121 CAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSITI 180
Query: 181 GILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEARE 240
GIL+A VLNYFFAKIKGGWGWRLSLGGA+VPALIITIGSLVLPDTPNSMIERGQ +EA+
Sbjct: 181 GILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQHEEAKT 240
Query: 241 KLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGIN 300
KLR+IRGV+DV +EF+DLVAAS+ S+ +EHPW NLL+RKYRPHLTMA++IPFFQQLTGIN
Sbjct: 241 KLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVMIPFFQQLTGIN 300
Query: 301 VIMFYAPVLFNTIGFGNDASLMSAVITGLVNACATL 336
VIMFYAPVLFNTIGF DASLMSAV+TG VN ATL
Sbjct: 301 VIMFYAPVLFNTIGFTTDASLMSAVVTGSVNVGATL 336
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297843956|ref|XP_002889859.1| hypothetical protein ARALYDRAFT_888424 [Arabidopsis lyrata subsp. lyrata] gi|297335701|gb|EFH66118.1| hypothetical protein ARALYDRAFT_888424 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust.
Identities = 283/337 (83%), Positives = 312/337 (92%), Gaps = 2/337 (0%)
Query: 1 MPAAGVFDNGNGK-GYPGKLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFP 59
MPA G F G+G+ YPGKLTPFV TC+VAAMGGLIFGYDIGISGGVTSMPSFLKRFFP
Sbjct: 1 MPAGG-FVVGDGQNAYPGKLTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFP 59
Query: 60 SVYRKQQANSSTNQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVL 119
SVYRKQQ ++STNQYCQY+S TLT+FTSSLYLAAL+SSLVAS+VTRKFGR+ SMLFGG+L
Sbjct: 60 SVYRKQQEDASTNQYCQYDSATLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGIL 119
Query: 120 FFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSIT 179
F AGALINGFA+ VWMLIVGR+LLGFGIGFANQ+VPLYLSEMAPYKYRGALNIGFQLSIT
Sbjct: 120 FCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSIT 179
Query: 180 IGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEAR 239
IGIL+A VLNYFFAKIKGGWGWRLSLGGA+VPALIITIGSLVLPDTPNSMIERGQ +EA+
Sbjct: 180 IGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQHEEAK 239
Query: 240 EKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGI 299
KLR+IRGV+DV +EF+DLVAAS+ S+ +EHPW NLL+RKYRPHLTMA++IPFFQQLTGI
Sbjct: 240 TKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVMIPFFQQLTGI 299
Query: 300 NVIMFYAPVLFNTIGFGNDASLMSAVITGLVNACATL 336
NVIMFYAPVLFNTIGF DASLMSAV+TG VN ATL
Sbjct: 300 NVIMFYAPVLFNTIGFTTDASLMSAVVTGSVNVAATL 336
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3915039|sp|Q41144.1|STC_RICCO RecName: Full=Sugar carrier protein C gi|169718|gb|AAA79761.1| sugar carrier protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust.
Identities = 279/338 (82%), Positives = 310/338 (91%), Gaps = 2/338 (0%)
Query: 1 MPAAGVF--DNGNGKGYPGKLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFF 58
MPA G GN K YPG LT +VTVTC+VAAMGGLIFGYDIGISGGVTSM SFLK+FF
Sbjct: 1 MPAVGGIPPSGGNRKVYPGNLTLYVTVTCVVAAMGGLIFGYDIGISGGVTSMDSFLKKFF 60
Query: 59 PSVYRKQQANSSTNQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGV 118
PSVYRK++A+ S+NQYCQY+S+TLT+FTSSLYLAAL++SLVAS++TRKFGRK SMLFGGV
Sbjct: 61 PSVYRKKKADESSNQYCQYDSQTLTMFTSSLYLAALIASLVASTITRKFGRKLSMLFGGV 120
Query: 119 LFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSI 178
LF AGA+ING A+ VWMLI+GR+LLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSI
Sbjct: 121 LFCAGAIINGAAKAVWMLILGRILLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSI 180
Query: 179 TIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEA 238
TIGIL+ANVLNYFFAKIKGGWGWRLSLGGAMVPALIIT+GSLVLPDTPNSMIERGQ +EA
Sbjct: 181 TIGILVANVLNYFFAKIKGGWGWRLSLGGAMVPALIITVGSLVLPDTPNSMIERGQHEEA 240
Query: 239 REKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTG 298
R L+++RGV DVDEEF DLV ASE SK+VEHPW NLL+RKYRPHL+MAI IPFFQQLTG
Sbjct: 241 RAHLKRVRGVEDVDEEFTDLVHASEDSKKVEHPWRNLLQRKYRPHLSMAIAIPFFQQLTG 300
Query: 299 INVIMFYAPVLFNTIGFGNDASLMSAVITGLVNACATL 336
INVIMFYAPVLF+TIGFG+DA+LMSAVITGLVN AT+
Sbjct: 301 INVIMFYAPVLFDTIGFGSDAALMSAVITGLVNVFATM 338
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255567421|ref|XP_002524690.1| sugar transporter, putative [Ricinus communis] gi|223536051|gb|EEF37709.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust.
Identities = 279/338 (82%), Positives = 310/338 (91%), Gaps = 2/338 (0%)
Query: 1 MPAAGVF--DNGNGKGYPGKLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFF 58
MPA G GN K YPG LT +VTVTC+VAAMGGLIFGYDIGISGGVTSM SFLK+FF
Sbjct: 1 MPAVGGIPPSGGNRKVYPGNLTLYVTVTCVVAAMGGLIFGYDIGISGGVTSMDSFLKKFF 60
Query: 59 PSVYRKQQANSSTNQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGV 118
PSVYRK++A+ S+NQYCQY+S+TLT+FTSSLYLAAL++SLVAS++TRKFGRK SMLFGGV
Sbjct: 61 PSVYRKKKADESSNQYCQYDSQTLTMFTSSLYLAALIASLVASTITRKFGRKLSMLFGGV 120
Query: 119 LFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSI 178
LF AGA+ING A+ VWMLI+GR+LLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSI
Sbjct: 121 LFCAGAIINGAAKAVWMLILGRILLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSI 180
Query: 179 TIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEA 238
TIGIL+ANVLNYFFAKIKGGWGWRLSLGGAMVPALIIT+GSLVLPDTPNSMIERGQ +EA
Sbjct: 181 TIGILVANVLNYFFAKIKGGWGWRLSLGGAMVPALIITVGSLVLPDTPNSMIERGQHEEA 240
Query: 239 REKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTG 298
R L+++RGV DVDEEF DLV ASE SK+VEHPW NLL+RKYRPHL+MAI IPFFQQLTG
Sbjct: 241 RAHLKRVRGVEDVDEEFTDLVHASEDSKKVEHPWRNLLQRKYRPHLSMAIAIPFFQQLTG 300
Query: 299 INVIMFYAPVLFNTIGFGNDASLMSAVITGLVNACATL 336
INVIMFYAPVLF+TIGFG+DA+LMSAVITGLVN AT+
Sbjct: 301 INVIMFYAPVLFDTIGFGSDAALMSAVITGLVNVFATM 338
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 336 | ||||||
| TAIR|locus:2202044 | 522 | STP1 "AT1G11260" [Arabidopsis | 0.997 | 0.641 | 0.783 | 1.3e-139 | |
| TAIR|locus:2166781 | 514 | STP11 "sugar transporter 11" [ | 0.994 | 0.649 | 0.584 | 6e-103 | |
| TAIR|locus:2092286 | 514 | STP4 "sugar transporter 4" [Ar | 0.988 | 0.645 | 0.562 | 9.1e-100 | |
| TAIR|locus:2092221 | 514 | AT3G19940 [Arabidopsis thalian | 0.988 | 0.645 | 0.571 | 1.5e-99 | |
| TAIR|locus:2011957 | 517 | STP9 "sugar transporter 9" [Ar | 0.991 | 0.644 | 0.582 | 1e-98 | |
| TAIR|locus:2151074 | 526 | MSS1 "AT5G26340" [Arabidopsis | 1.0 | 0.638 | 0.534 | 2.6e-95 | |
| TAIR|locus:2151596 | 514 | AT5G61520 [Arabidopsis thalian | 0.946 | 0.618 | 0.542 | 1.4e-87 | |
| TAIR|locus:2179734 | 507 | AT5G26250 [Arabidopsis thalian | 0.982 | 0.650 | 0.502 | 6e-87 | |
| TAIR|locus:2083003 | 507 | STP6 "sugar transporter 6" [Ar | 0.982 | 0.650 | 0.478 | 2.2e-82 | |
| TAIR|locus:2195995 | 504 | STP14 "sugar transport protein | 0.997 | 0.664 | 0.476 | 4.5e-82 |
| TAIR|locus:2202044 STP1 "AT1G11260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1366 (485.9 bits), Expect = 1.3e-139, P = 1.3e-139
Identities = 264/337 (78%), Positives = 289/337 (85%)
Query: 1 MPAAGVFDNGNG-KGYPGKLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFP 59
MPA G F G+G K YPGKLTPFV TC+VAAMGGLIFGYDIGISGGVTSMPSFLKRFFP
Sbjct: 1 MPAGG-FVVGDGQKAYPGKLTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFP 59
Query: 60 SVYRKQQANSSTNQYCQYNXXXXXXXXXXXXXXXXXXXXXXXXVTRKFGRKKSMLFGGVL 119
SVYRKQQ ++STNQYCQY+ VTRKFGR+ SMLFGG+L
Sbjct: 60 SVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGIL 119
Query: 120 FFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSIT 179
F AGALINGFA+ VWMLIVGR+LLGFGIGFANQ+VPLYLSEMAPYKYRGALNIGFQLSIT
Sbjct: 120 FCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSIT 179
Query: 180 IGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEAR 239
IGIL+A VLNYFFAKIKGGWGWRLSLGGA+VPALIITIGSLVLPDTPNSMIERGQ +EA+
Sbjct: 180 IGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQHEEAK 239
Query: 240 EKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGI 299
KLR+IRGV+DV +EF+DLVAAS+ S+ +EHPW NLL+RKYRPHLTMA++IPFFQQLTGI
Sbjct: 240 TKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVMIPFFQQLTGI 299
Query: 300 NVIMFYAPVLFNTIGFGNDASLMSAVITGLVNACATL 336
NVIMFYAPVLFNTIGF DASLMSAV+TG VN ATL
Sbjct: 300 NVIMFYAPVLFNTIGFTTDASLMSAVVTGSVNVAATL 336
|
|
| TAIR|locus:2166781 STP11 "sugar transporter 11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1020 (364.1 bits), Expect = 6.0e-103, P = 6.0e-103
Identities = 197/337 (58%), Positives = 246/337 (72%)
Query: 3 AAGVF--DNGNGKGYPGKLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPS 60
A G F ++G+G Y G++T FV +TCIVAAMGGL+FGYDIGISGGV SM FL +FFP
Sbjct: 2 AGGAFIDESGHGGDYEGRVTAFVMITCIVAAMGGLLFGYDIGISGGVISMEDFLTKFFPD 61
Query: 61 VYRKQQ-ANSSTNQYCQYNXXXXXXXXXXXXXXXXXXXXXXXXVTRKFGRKKSMLFGGVL 119
V R+ Q +YC+Y+ +TR FGRK SM+ G +
Sbjct: 62 VLRQMQNKRGRETEYCKYDNELLTLFTSSLYLAALFASFLASTITRLFGRKVSMVIGSLA 121
Query: 120 FFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSIT 179
F +GAL+NG A + MLI+GRL LG G+GFANQSVPLYLSEMAP K RGALNIGFQL+IT
Sbjct: 122 FLSGALLNGLAINLEMLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRGALNIGFQLAIT 181
Query: 180 IGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEAR 239
IGIL AN++NY K++ G GWRLSLG A VPA+++ +G LPDTPNS++ERG +++A+
Sbjct: 182 IGILAANIVNYVTPKLQNGIGWRLSLGLAGVPAVMMLVGCFFLPDTPNSILERGNKEKAK 241
Query: 240 EKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGI 299
E L+KIRG +V+ EFN+L A EA+K+V+HPW N+++ +YRP LT IPFFQQLTGI
Sbjct: 242 EMLQKIRGTMEVEHEFNELCNACEAAKKVKHPWTNIMQARYRPQLTFCTFIPFFQQLTGI 301
Query: 300 NVIMFYAPVLFNTIGFGNDASLMSAVITGLVNACATL 336
NVIMFYAPVLF TIGFGNDASL+SAVITGLVN +T+
Sbjct: 302 NVIMFYAPVLFKTIGFGNDASLISAVITGLVNVLSTI 338
|
|
| TAIR|locus:2092286 STP4 "sugar transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 990 (353.6 bits), Expect = 9.1e-100, P = 9.1e-100
Identities = 188/334 (56%), Positives = 238/334 (71%)
Query: 3 AAGVFDNGNG-KGYPGKLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSV 61
A G G + Y KLTP V VTC + A GGLIFGYD+GISGGVTSM FL+ FFP V
Sbjct: 2 AGGFVSQTPGVRNYNYKLTPKVFVTCFIGAFGGLIFGYDLGISGGVTSMEPFLEEFFPYV 61
Query: 62 YRKQQANSSTNQYCQYNXXXXXXXXXXXXXXXXXXXXXXXXVTRKFGRKKSMLFGGVLFF 121
Y+K ++ + N+YC+++ +TR FGRK SM GG FF
Sbjct: 62 YKKMKS-AHENEYCRFDSQLLTLFTSSLYVAALVSSLFASTITRVFGRKWSMFLGGFTFF 120
Query: 122 AGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIG 181
G+ NGFAQ + ML++GR+LLGFG+GFANQSVP+YLSEMAP RGA N GFQ++I G
Sbjct: 121 IGSAFNGFAQNIAMLLIGRILLGFGVGFANQSVPVYLSEMAPPNLRGAFNNGFQVAIIFG 180
Query: 182 ILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEAREK 241
I++A ++NYF A++KG GWR+SLG A VPA++I IG+L+LPDTPNS+IERG +EA+E
Sbjct: 181 IVVATIINYFTAQMKGNIGWRISLGLACVPAVMIMIGALILPDTPNSLIERGYTEEAKEM 240
Query: 242 LRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINV 301
L+ IRG N+VDEEF DL+ ASE SKQV+HPW N++ +YRP L M IPFFQQLTGINV
Sbjct: 241 LQSIRGTNEVDEEFQDLIDASEESKQVKHPWKNIMLPRYRPQLIMTCFIPFFQQLTGINV 300
Query: 302 IMFYAPVLFNTIGFGNDASLMSAVITGLVNACAT 335
I FYAPVLF T+GFG+ ASL+SA++TG++ T
Sbjct: 301 ITFYAPVLFQTLGFGSKASLLSAMVTGIIELLCT 334
|
|
| TAIR|locus:2092221 AT3G19940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 988 (352.9 bits), Expect = 1.5e-99, P = 1.5e-99
Identities = 192/336 (57%), Positives = 241/336 (71%)
Query: 3 AAGVF---DNGNGKGYPGKLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFP 59
A G F G G+ Y G +T FV +TCIVAAMGGL+FGYD+GISGGVTSM FL +FFP
Sbjct: 2 AGGAFVSEGGGGGRSYEGGVTAFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLTKFFP 61
Query: 60 SVYRKQQANSSTNQYCQYNXXXXXXXXXXXXXXXXXXXXXXXXVTRKFGRKKSMLFGGVL 119
V + + YC+++ +TRK GRK SM GG+
Sbjct: 62 QVESQMKKAKHDTAYCKFDNQMLQLFTSSLYLAALVASFMASVITRKHGRKVSMFIGGLA 121
Query: 120 FFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSIT 179
F GAL N FA V MLI+GRLLLG G+GFANQS P+YLSEMAP K RGALNIGFQ++IT
Sbjct: 122 FLIGALFNAFAVNVSMLIIGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAIT 181
Query: 180 IGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEAR 239
IGIL+AN++NY +K+ GWR+SLG A VPA+++ IGS +LPDTPNSM+ERG+ +EA+
Sbjct: 182 IGILVANLINYGTSKM-AQHGWRVSLGLAAVPAVVMVIGSFILPDTPNSMLERGKNEEAK 240
Query: 240 EKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGI 299
+ L+KIRG ++VD EF DL+ A EA+K+VE+PW N+++ KYRP L IPFFQQ+TGI
Sbjct: 241 QMLKKIRGADNVDHEFQDLIDAVEAAKKVENPWKNIMESKYRPALIFCSAIPFFQQITGI 300
Query: 300 NVIMFYAPVLFNTIGFGNDASLMSAVITGLVNACAT 335
NVIMFYAPVLF T+GFG+DA+LMSAVITG+VN +T
Sbjct: 301 NVIMFYAPVLFKTLGFGDDAALMSAVITGVVNMLST 336
|
|
| TAIR|locus:2011957 STP9 "sugar transporter 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 980 (350.0 bits), Expect = 1.0e-98, P = 1.0e-98
Identities = 197/338 (58%), Positives = 240/338 (71%)
Query: 3 AAGVF---DNGNGKGYPGKLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFP 59
A G F G G Y G +T FV +TCIVAAMGGL+FGYD+GISGGVTSM FL +FFP
Sbjct: 2 AGGAFVSEGGGGGNSYEGGVTVFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLSKFFP 61
Query: 60 SVYRKQQANSSTNQYCQYNXXXXXXXXXXXXXXXXXXXXXXXXVTRKFGRKKSMLFGGVL 119
V ++ YC+++ VTRK+GRK SM GGV
Sbjct: 62 EVDKQMHEARRETAYCKFDNQLLQLFTSSLYLAALASSFVASAVTRKYGRKISMFVGGVA 121
Query: 120 FFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSIT 179
F G+L N FA V MLIVGRLLLG G+GFANQS P+YLSEMAP K RGALNIGFQ++IT
Sbjct: 122 FLIGSLFNAFATNVAMLIVGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAIT 181
Query: 180 IGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEAR 239
IGILIAN++NY +++ GWR+SLG A VPA+I+ IGS VLPDTPNSM+ERG+ ++AR
Sbjct: 182 IGILIANLINYGTSQMAKN-GWRVSLGLAAVPAVIMVIGSFVLPDTPNSMLERGKYEQAR 240
Query: 240 EKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKR-KYRPHLTMAILIPFFQQLTG 298
E L+KIRG ++VDEEF DL A EA+K+V++PW N+ ++ KYRP L IPFFQQ+TG
Sbjct: 241 EMLQKIRGADNVDEEFQDLCDACEAAKKVDNPWKNIFQQAKYRPALVFCSAIPFFQQITG 300
Query: 299 INVIMFYAPVLFNTIGFGNDASLMSAVITGLVNACATL 336
INVIMFYAPVLF T+GF +DASL+SAVITG VN +TL
Sbjct: 301 INVIMFYAPVLFKTLGFADDASLISAVITGAVNVVSTL 338
|
|
| TAIR|locus:2151074 MSS1 "AT5G26340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 948 (338.8 bits), Expect = 2.6e-95, P = 2.6e-95
Identities = 180/337 (53%), Positives = 240/337 (71%)
Query: 1 MPAAGVFDNGNGKGYPGKLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPS 60
M G + NG + K+TP V ++CI+AA GGL+FGYD+G+SGGVTSMP FL++FFP
Sbjct: 1 MTGGGFATSANGVEFEAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMPDFLEKFFPV 60
Query: 61 VYRKQQANSSTNQ-YCQYNXXXXXXXXXXXXXXXXXXXXXXXXVTRKFGRKKSMLFGGVL 119
VYRK A + + YC+Y+ TR GR+ +ML GV
Sbjct: 61 VYRKVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTMLIAGVF 120
Query: 120 FFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSIT 179
F G +N AQ + MLI GR+LLG G+GFANQ+VPL+LSE+AP + RG LNI FQL++T
Sbjct: 121 FIIGVALNAGAQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVT 180
Query: 180 IGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEAR 239
IGIL AN++NY AKIKGGWGWRLSLG A +PAL++T+G+L++ +TPNS++ERG+ DE +
Sbjct: 181 IGILFANLVNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNSLVERGRLDEGK 240
Query: 240 EKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGI 299
LR+IRG ++V+ EF DL+ AS +K+V+HP+ NLL+R+ RP L +A+ + FQQ TGI
Sbjct: 241 AVLRRIRGTDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRPQLVIAVALQIFQQCTGI 300
Query: 300 NVIMFYAPVLFNTIGFGNDASLMSAVITGLVNACATL 336
N IMFYAPVLF+T+GFG+DASL SAV+TG VN +TL
Sbjct: 301 NAIMFYAPVLFSTLGFGSDASLYSAVVTGAVNVLSTL 337
|
|
| TAIR|locus:2151596 AT5G61520 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 875 (313.1 bits), Expect = 1.4e-87, P = 1.4e-87
Identities = 177/326 (54%), Positives = 220/326 (67%)
Query: 17 GKLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQAN-----SST 71
GK+T FV +C++AAMGG+IFGYDIG+SGGV SM FLKRFFP VY+ Q+ + +S
Sbjct: 18 GKITYFVVASCVMAAMGGVIFGYDIGVSGGVMSMGPFLKRFFPKVYKLQEEDRRRRGNSN 77
Query: 72 NQYCQYNXXXXXXXXXXXXXXXXXXXXXXXXVTRKFGRKKSMLFGGVLFFAGALINGFAQ 131
N YC +N VTR +GRK S+ GGV F AGA + G AQ
Sbjct: 78 NHYCLFNSQLLTSFTSSLYVSGLIATLLASSVTRSWGRKPSIFLGGVSFLAGAALGGSAQ 137
Query: 132 GVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYF 191
V MLI+ RLLLG G+GFANQSVPLYLSEMAP KYRGA++ GFQL I IG L ANV+NY
Sbjct: 138 NVAMLIIARLLLGVGVGFANQSVPLYLSEMAPAKYRGAISNGFQLCIGIGFLSANVINYE 197
Query: 192 FAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIER-GQRDEAREKLRKIRGVND 250
IK GW R+SL A +PA I+T+GSL LP+TPNS+I+ G + LR++RG ND
Sbjct: 198 TQNIKHGW--RISLATAAIPASILTLGSLFLPETPNSIIQTTGDVHKTELMLRRVRGTND 255
Query: 251 VDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLF 310
V +E DLV AS S + + LL+RKYRP L MA++IPFFQQ+TGINV+ FYAPVL+
Sbjct: 256 VQDELTDLVEASSGSDTDSNAFLKLLQRKYRPELVMALVIPFFQQVTGINVVAFYAPVLY 315
Query: 311 NTIGFGNDASLMSAVITGLVNACATL 336
T+GFG SLMS ++TG+V +TL
Sbjct: 316 RTVGFGESGSLMSTLVTGIVGTSSTL 341
|
|
| TAIR|locus:2179734 AT5G26250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
Identities = 168/334 (50%), Positives = 226/334 (67%)
Query: 3 AAGVFDNGNGKGYPGKLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVY 62
A + NGN K + K+T +V + I+AA+GGLIFGYDIGISGGVT+M FLK FFPSVY
Sbjct: 2 AVVISSNGNSKSFDAKMTVYVFICVIIAAVGGLIFGYDIGISGGVTAMDDFLKEFFPSVY 61
Query: 63 -RKQQANSSTNQYCQYNXXXXXXXXXXXXXXXXXXXXXXXXVTRKFGRKKSMLFGGVLFF 121
RK+ A+ N YC+Y+ K GR+ +M + F
Sbjct: 62 ERKKHAHE--NNYCKYDNQFLQLFTSSLYLAALVASFFASATCSKLGRRPTMQLASIFFL 119
Query: 122 AGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIG 181
G + A ++MLI+GR+LLGFG+GF NQ+VPL+LSE+AP + RG LNI FQL +TIG
Sbjct: 120 IGVGLAAGAVNIYMLIIGRILLGFGVGFGNQAVPLFLSEIAPARLRGGLNIVFQLMVTIG 179
Query: 182 ILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEAREK 241
ILIAN++NYF + I +GWR++LGGA +PALI+ GSL++ +TP S+IER + E +E
Sbjct: 180 ILIANIVNYFTSSIHP-YGWRIALGGAGIPALILLFGSLLICETPTSLIERNKTKEGKET 238
Query: 242 LRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINV 301
L+KIRGV DVDEE+ +V A + ++QV+ P+ L+K RP + +L+ FFQQ TGIN
Sbjct: 239 LKKIRGVEDVDEEYESIVHACDIARQVKDPYTKLMKPASRPPFVIGMLLQFFQQFTGINA 298
Query: 302 IMFYAPVLFNTIGFGNDASLMSAVITGLVNACAT 335
IMFYAPVLF T+GFGNDA+L+SAV+TG +N +T
Sbjct: 299 IMFYAPVLFQTVGFGNDAALLSAVVTGTINVLST 332
|
|
| TAIR|locus:2083003 STP6 "sugar transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 826 (295.8 bits), Expect = 2.2e-82, P = 2.2e-82
Identities = 159/332 (47%), Positives = 222/332 (66%)
Query: 4 AGVFDNGNGKGYPGKLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYR 63
A V N N + K+T +V + ++AA+GGLIFGYDIGISGGV++M FLK FFP+V+
Sbjct: 2 AVVVSNANAPAFEAKMTVYVFICVMIAAVGGLIFGYDIGISGGVSAMDDFLKEFFPAVWE 61
Query: 64 KQQANSSTNQYCQYNXXXXXXXXXXXXXXXXXXXXXXXXVTRKFGRKKSMLFGGVLFFAG 123
+++ + N YC+Y+ K GR+ +M F + F G
Sbjct: 62 RKK-HVHENNYCKYDNQFLQLFTSSLYLAALVASFVASATCSKLGRRPTMQFASIFFLIG 120
Query: 124 ALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGIL 183
+ A + MLI+GRL LGFG+GF NQ+VPL+LSE+AP + RG LNI FQL +TIGIL
Sbjct: 121 VGLTAGAVNLVMLIIGRLFLGFGVGFGNQAVPLFLSEIAPAQLRGGLNIVFQLMVTIGIL 180
Query: 184 IANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEAREKLR 243
IAN++NYF A + +GWR++LGGA +PA+I+ GSL++ +TP S+IER + +E +E LR
Sbjct: 181 IANIVNYFTATVHP-YGWRIALGGAGIPAVILLFGSLLIIETPTSLIERNKNEEGKEALR 239
Query: 244 KIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIM 303
KIRGV+D+++E+ +V A + + QV+ P+ LLK RP + +L+ FQQ TGIN IM
Sbjct: 240 KIRGVDDINDEYESIVHACDIASQVKDPYRKLLKPASRPPFIIGMLLQLFQQFTGINAIM 299
Query: 304 FYAPVLFNTIGFGNDASLMSAVITGLVNACAT 335
FYAPVLF T+GFG+DA+L+SAVITG +N AT
Sbjct: 300 FYAPVLFQTVGFGSDAALLSAVITGSINVLAT 331
|
|
| TAIR|locus:2195995 STP14 "sugar transport protein 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 823 (294.8 bits), Expect = 4.5e-82, P = 4.5e-82
Identities = 162/340 (47%), Positives = 226/340 (66%)
Query: 1 MPAAGVFDNGNGKG---YPGKLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRF 57
M + D G K Y ++T + CIV +MGG +FGYD+G+SGGVTSM FLK F
Sbjct: 1 MAGGALTDEGGLKRAHLYEHRITSYFIFACIVGSMGGSLFGYDLGVSGGVTSMDDFLKEF 60
Query: 58 FPSVYRKQQANSSTNQYCQYNXXXXXXXXXXXXXXXXXXXXXXXXVTRKFGRKKSMLFGG 117
FP +Y+++Q + + YC+Y+ VTR +GR+ S+L G
Sbjct: 61 FPGIYKRKQMHLNETDYCKYDNQILTLFTSSLYFAGLISTFGASYVTRIYGRRGSILVGS 120
Query: 118 VLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLS 177
V FF G +IN A+ + MLI+GR+ LG GIGF NQ+VPLYLSEMAP K RG +N FQL+
Sbjct: 121 VSFFLGGVINAAAKNILMLILGRIFLGIGIGFGNQAVPLYLSEMAPAKIRGTVNQLFQLT 180
Query: 178 ITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDE 237
IGIL+AN++NY +I WGWRLSLG A VPA+++ +G LVLP+TPNS++E+G+ ++
Sbjct: 181 TCIGILVANLINYKTEQIHP-WGWRLSLGLATVPAILMFLGGLVLPETPNSLVEQGKLEK 239
Query: 238 AREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTM-AILIPFFQQL 296
A+ L K+RG N+++ EF DLV AS+A++ V++P+ NLL R+ RP L + AI +P FQQL
Sbjct: 240 AKAVLIKVRGTNNIEAEFQDLVEASDAARAVKNPFRNLLARRNRPQLVIGAIGLPAFQQL 299
Query: 297 TGINVIMFYAPVLFNTIGFGNDASLMSAVITGLVNACATL 336
TG+N I+FYAPV+F ++GFG ASL+S+ IT A +
Sbjct: 300 TGMNSILFYAPVMFQSLGFGGSASLISSTITNAALVVAAI 339
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q41144 | STC_RICCO | No assigned EC number | 0.8254 | 1.0 | 0.6424 | N/A | no |
| P23586 | STP1_ARATH | No assigned EC number | 0.8363 | 1.0 | 0.6436 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 336 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 2e-86 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 2e-69 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 4e-39 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 6e-19 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 4e-13 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 9e-12 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 6e-11 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 3e-08 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 3e-08 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 6e-08 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 8e-08 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 2e-07 | |
| COG2807 | 395 | COG2807, CynX, Cyanate permease [Inorganic ion tra | 7e-06 | |
| pfam13347 | 425 | pfam13347, MFS_2, MFS/sugar transport protein | 7e-06 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 9e-06 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 2e-05 | |
| COG2211 | 467 | COG2211, MelB, Na+/melibiose symporter and related | 3e-05 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 7e-05 | |
| PRK10213 | 394 | PRK10213, nepI, ribonucleoside transporter; Review | 1e-04 | |
| pfam06609 | 598 | pfam06609, TRI12, Fungal trichothecene efflux pump | 4e-04 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 0.002 | |
| TIGR00792 | 437 | TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuron | 0.002 | |
| PRK15075 | 434 | PRK15075, PRK15075, citrate-proton symporter; Prov | 0.003 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 266 bits (683), Expect = 2e-86
Identities = 125/314 (39%), Positives = 180/314 (57%), Gaps = 15/314 (4%)
Query: 27 CIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQANSSTNQYCQYNSETLTLFT 86
+VAA+GG +FGYD G+ G ++ F KRF A S+ L
Sbjct: 2 ALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLS---------GLIV 52
Query: 87 SSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQG--VWMLIVGRLLLG 144
S + L+ SL A + +FGRKKS+L G VLF GAL+ GFA+G +MLIVGR+++G
Sbjct: 53 SIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVG 112
Query: 145 FGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLS 204
G+G + VP+Y+SE+AP K RGAL +QL IT GIL+A ++ K GWR+
Sbjct: 113 LGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIP 172
Query: 205 LGGAMVPALIITIGSLVLPDTPNSMIERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEA 264
LG VPA+++ IG L LP++P ++ +G+ +EAR L K+RGV+DVD+E + + E
Sbjct: 173 LGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLER 232
Query: 265 SKQVEHPWGNLLKRK--YRPHLTMAILIPFFQQLTGINVIMFYAPVLFNTIGFGNDASLM 322
S + E L R R L M +++ FQQLTGIN I +Y+P +F T+G + +
Sbjct: 233 SVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSL--L 290
Query: 323 SAVITGLVNACATL 336
+I G+VN T
Sbjct: 291 VTIIVGVVNFVFTF 304
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 224 bits (572), Expect = 2e-69
Identities = 121/334 (36%), Positives = 188/334 (56%), Gaps = 26/334 (7%)
Query: 15 YPGKLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQANSSTNQY 74
G V + ++AA+GGL+FGYD G+ GG ++P+F +F ANS +
Sbjct: 18 GLGSTYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTS-------ANSDS--- 67
Query: 75 CQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALING---FAQ 131
Y+S L S + + +L A ++ +FGRKKS+L +LF GA++ G FA
Sbjct: 68 --YSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFAL 125
Query: 132 GVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYF 191
V MLIVGR+LLG G+G A+ VP+YLSE+AP RGAL +QL+IT GIL+A
Sbjct: 126 SVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGS- 184
Query: 192 FAKIKGGW--GWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEAREKLRKIRGVN 249
K+ GWR+ LG ++PA ++ +G LP++P ++ +G+ +EAR+ L ++RG +
Sbjct: 185 -GKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTS 243
Query: 250 DVDEEFNDLVAASEA-----SKQVEHPWGNL--LKRKYRPHLTMAILIPFFQQLTGINVI 302
D+E D + + + V+ WG+L R+ R L + +++ +FQQ TGIN I
Sbjct: 244 GEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAI 303
Query: 303 MFYAPVLFNTIGFGNDASLMSAVITGLVNACATL 336
M+Y+P +F G D + + ++I G VN T
Sbjct: 304 MYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTF 337
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 4e-39
Identities = 88/330 (26%), Positives = 156/330 (47%), Gaps = 41/330 (12%)
Query: 28 IVAAMGGLIFGYDIG-ISGGVTSMPSFLKRFFPSVYRKQQANSSTNQYCQYNSETLTLFT 86
+VA +GGL+FGYD ISG V S+ + + N + L
Sbjct: 15 LVATLGGLLFGYDTAVISGTVESLNTVFV-------------APQNLSESAANSLLGFCV 61
Query: 87 SSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALING------FAQG------VW 134
+S + ++ + + +FGR+ S+ VLFF AL + + G V
Sbjct: 62 ASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVP 121
Query: 135 MLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAK 194
++ R++ G G+G A+ P+Y++E+AP RG L Q +I G L+ +NYF A+
Sbjct: 122 EFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIAR 181
Query: 195 IKGG-W----GWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEAREKLRKIRGVN 249
W GWR +PAL+ + +P+TP ++ RG++++A LRKI G
Sbjct: 182 SGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNT 241
Query: 250 DVDEEFNDLVAASEASKQVEHP---WGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYA 306
+ ++ + + ++ +G + + + +++ FQQ GINV+++YA
Sbjct: 242 LATQALQEIKHSLDHGRKTGGKLLMFGVGV-------IVIGVMLSVFQQFVGINVVLYYA 294
Query: 307 PVLFNTIGFGNDASLMSAVITGLVNACATL 336
P +F T+G D +L+ +I G++N T+
Sbjct: 295 PEIFKTLGASTDIALLQTIIVGVINLTFTV 324
|
Length = 479 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 6e-19
Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 3/151 (1%)
Query: 73 QYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQG 132
+ ++ L S+ L L SL+A ++ +FGR++ +L G +LF G+L+ FA
Sbjct: 27 EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASS 86
Query: 133 VWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFF 192
+W+L+VGR LLG G G + ++E P K RG F +G L+ +L
Sbjct: 87 LWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLL 146
Query: 193 AKIKGGWGWRLSLGGAMVPALIITIGSLVLP 223
A+ GWR + L++ + L L
Sbjct: 147 AES---LGWRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 4e-13
Identities = 59/252 (23%), Positives = 106/252 (42%), Gaps = 20/252 (7%)
Query: 84 LFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLL 143
L S ++ LL S V ++ +FGRKK +L ++ ++ F+ + +V RLL+
Sbjct: 131 LTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLV 190
Query: 144 GFGI-GFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWR 202
G GI G Q+V L E P K R + Q+ ++G+++ ++ YF WR
Sbjct: 191 GMGIGGIWVQAVVLNT-EFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP------DWR 243
Query: 203 LSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEAREKLRKIRGVND--VDEEFNDLVA 260
+P + + S +P++P +I +G+ +EA + L++I +N + E L
Sbjct: 244 WLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSL 303
Query: 261 ASEASKQVEHP--WGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFNTIGFGND 318
+ S + R +++ F +Y VL GN
Sbjct: 304 EKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWF-----TTAFS-YYGLVLDLGNLGGNI 357
Query: 319 ASLMSAVITGLV 330
+ I+GLV
Sbjct: 358 --YLDLFISGLV 367
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 9e-12
Identities = 52/257 (20%), Positives = 98/257 (38%), Gaps = 35/257 (13%)
Query: 81 TLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGR 140
+ L ++ L L+ +A ++ +FGR++ +L G +LF G L+ FA +W+L+V R
Sbjct: 33 EIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLR 92
Query: 141 LLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWG 200
+L G G G + +++ P + RG +G + +L A + +G
Sbjct: 93 VLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASL---FG 149
Query: 201 WRLSLGGAMVPALI-ITIGSLVLPDTPNSMIERGQRDEAREKLRKIRGVNDVDEEFNDLV 259
WR + + AL+ + +L+LP P +EA L
Sbjct: 150 WRAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPA-------------- 195
Query: 260 AASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFNTIGFGNDA 319
W LL+ + +L+ ++ Y P+ +G
Sbjct: 196 ------------WKLLLRDPV-----LWLLLALLLFGFAFFALLTYLPLYQEVLGLSALL 238
Query: 320 SLMSAVITGLVNACATL 336
+ + + GL+ A L
Sbjct: 239 AGLLLGLAGLLGAIGRL 255
|
Length = 346 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 6e-11
Identities = 54/254 (21%), Positives = 109/254 (42%), Gaps = 19/254 (7%)
Query: 84 LFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLL 143
LF++ L + +L + + GR++ +L+ +LF L+ A V L++ R L
Sbjct: 57 LFSAGL-IGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLA 115
Query: 144 GFGIGFANQSVPLYLSEMAPYKYR----GALNIGFQLSITIGILIANVLNYFFAKIKGGW 199
G G+G ++ +SE AP ++R G + G+ + +G +A L F
Sbjct: 116 GLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF------- 168
Query: 200 GWR-LSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEAREKLRKIRGVNDVDEEFNDL 258
GWR L G + P L++ + LP++ + ++ + + R + I + E
Sbjct: 169 GWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRP-ETVRRIVNAI--APQMQAEAQSA 225
Query: 259 VAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFNTIGFGND 318
+ +A++ + L + +T+ + + +F L G+ + + P L + G
Sbjct: 226 LPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKL--MVELGFS 283
Query: 319 ASLMSAVITGLVNA 332
S ++A L N
Sbjct: 284 LS-LAATGGALFNF 296
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 3e-08
Identities = 35/160 (21%), Positives = 60/160 (37%), Gaps = 13/160 (8%)
Query: 91 LAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFA 150
L L + + + +T + R++ +L LF L++ A +L++ R L G G
Sbjct: 59 LGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVF 118
Query: 151 NQSVPLYLSEMAPYKYRGA----LNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLG 206
+ + P RG + G L+ +G+ + L +GWR +
Sbjct: 119 WSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQL-------FGWRATFL 171
Query: 207 GAMVPALIITIGSLVLPDTPNSMIERGQRDEAREKLRKIR 246
V AL+ + L P S I R LR +R
Sbjct: 172 AIAVLALLALLLLWKL--LPPSEISGSLPGPLRTLLRLLR 209
|
Length = 394 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 3e-08
Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 16/176 (9%)
Query: 87 SSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFG 146
+YL ++ + + K GRK+ +L + A + F QG + RLL GFG
Sbjct: 209 LIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFG 268
Query: 147 IGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLG 206
IG A V Y +E + RG + IG + A + + I +GW +G
Sbjct: 269 IGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAW---AIIPHYGWSFQMG 325
Query: 207 GA----------MVPAL--IITIGSLV-LPDTPNSMIERGQRDEAREKLRKIRGVN 249
A +V A + IG+L +P++P +E G+ DEA L+ I N
Sbjct: 326 SAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTN 381
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 6e-08
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 4/148 (2%)
Query: 77 YNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKS-MLFGGVLFFAGALINGFAQGVWM 135
++ L S L +L +L+ ++ + GR++ +L G +L G L+ A + +
Sbjct: 208 LSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLAL 267
Query: 136 LIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKI 195
L+V LLLGFG+GFA ++ SE+AP + RG + F ++G + +
Sbjct: 268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALG---PLLAGLL 324
Query: 196 KGGWGWRLSLGGAMVPALIITIGSLVLP 223
G+ AL+ + L+LP
Sbjct: 325 LDTGGYGGVFLILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 8e-08
Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 4/144 (2%)
Query: 83 TLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLL 142
L + L L+ S ++ +T +FGRK +L G +F + + + +LI+ R L
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 143 LGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWR 202
GFG FA + ++++ P + RG I +G L+ L + GWR
Sbjct: 61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGV---LAQFLGWR 117
Query: 203 LSLGGAMVPALIITI-GSLVLPDT 225
+ AL I + +LP+T
Sbjct: 118 APFLFLAILALAAFILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 9/134 (6%)
Query: 86 TSSLYLAALLS----SLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRL 141
+SL AA +S L+ ++ ++GR+ +M+ VLF G L GFA G W L + RL
Sbjct: 57 AASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARL 116
Query: 142 LLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLS-ITIGILIANVLNYFFAKIKGGWG 200
++G G+ S Y+ E P R + GF +S +IG ++A + ++ + WG
Sbjct: 117 VIGMGMAGEYGSSATYVIESWPKHLRNKAS-GFLISGFSIGAVVAAQV---YSLVVPVWG 172
Query: 201 WRLSLGGAMVPALI 214
WR ++P +
Sbjct: 173 WRALFFIGILPIIF 186
|
Length = 496 |
| >gnl|CDD|225365 COG2807, CynX, Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 7e-06
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 18/124 (14%)
Query: 97 SLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPL 156
+ A + R+FG ++S+ +L AG LI G+ +L +G LL G GI N +P
Sbjct: 64 APAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPS 122
Query: 157 YLSEMAPYK-------YRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAM 209
+ P + Y +L G L+ + + +A GWR +LG
Sbjct: 123 LIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSG----------GWRGALGFWA 172
Query: 210 VPAL 213
+ AL
Sbjct: 173 LLAL 176
|
Length = 395 |
| >gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 7e-06
Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 74 YCQY---NSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFA 130
Y Y N+ ++ +AA+L + + + ++FG+K++ L G +L G ++ F
Sbjct: 248 YFTYVLGNAGLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFL 307
Query: 131 --QGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPY 164
+W+ +V +L G G+G A L+++ Y
Sbjct: 308 PPGSLWLFLVLVVLAGIGLGLATLLPWAMLADVVDY 343
|
This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 9e-06
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 1/122 (0%)
Query: 104 TRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAP 163
++GR+ M+ VLF AG L GFA G + + RL++G G+G S Y+ E P
Sbjct: 71 GDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWP 130
Query: 164 YKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLP 223
R + +G ++A + + G GWR +++P + +P
Sbjct: 131 KHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGD-GWRALFFISILPIIFALWLRKNIP 189
Query: 224 DT 225
+
Sbjct: 190 EA 191
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Query: 106 KFGRKKSMLFG----GVLFFAGALINGFAQ-GVW---MLIVGRLLLGFGIGFANQSVPLY 157
+ GRKK+++ G+ L+ +A G+W +L++ RL+ GF +G LY
Sbjct: 61 RIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALY 120
Query: 158 LSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGG-----WGWRL 203
L+E AP RG Q+ +G+L+A + + + G WGWR+
Sbjct: 121 LAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRI 171
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 3e-05
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Query: 64 KQQANSSTNQYCQYNSETLTLFTS----SLYLAALLSSLVASSVTRKFGRKKSMLFGGVL 119
S Y Y LF + L+ ++ + +KFG+KK L G +L
Sbjct: 252 FNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLL 311
Query: 120 FFAGALINGFAQG--VWMLIVGRLLLGFGIGFAN 151
G L+ F V +++V ++ G G G AN
Sbjct: 312 LAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIAN 345
|
Length = 467 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 7e-05
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 3/110 (2%)
Query: 106 KFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYK 165
KFGRK M++ V + G ++G A GV ML + R ++G G+ Y E P
Sbjct: 79 KFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKH 138
Query: 166 YRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALII 215
+ + IG +IA YF +GWR + ++P L++
Sbjct: 139 LKSKASAFLVSGFGIGNIIA---AYFMPSFAEAYGWRAAFFVGLLPVLLV 185
|
Length = 426 |
| >gnl|CDD|182309 PRK10213, nepI, ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 1e-04
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 6/136 (4%)
Query: 93 ALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGI-GFAN 151
A+ +SL + + R+ ++ VL L+ FA +L++GR LG + GF
Sbjct: 68 AMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWA 127
Query: 152 QSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVP 211
S L + + P AL++ F +++I ++IA L F ++ GWR A V
Sbjct: 128 MSASLTMRLVPPRTVPKALSVIFG-AVSIALVIAAPLGSFLGEL---IGWRNVFNAAAVM 183
Query: 212 ALIITIGSL-VLPDTP 226
++ + LP P
Sbjct: 184 GVLCIFWIIKSLPSLP 199
|
Length = 394 |
| >gnl|CDD|115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12) | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 4e-04
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query: 79 SETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIV 138
SE LF++ + +S L+ +T +FGR+ ++ ++ GA++ A L+
Sbjct: 77 SENQGLFSTLWTMGQAVSILMMGRLTDRFGRRPFVIATHIIGLVGAIVGCTANKFNTLLA 136
Query: 139 GRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAK---I 195
LLG G A S PL++ E+ K + +G L ++ + N +F + I
Sbjct: 137 AMTLLGVAAGPAGAS-PLFIGELMSNKTK---FLGL-LIVSAPTIAMNGAGPYFGQRLAI 191
Query: 196 KGGWGW 201
+G W W
Sbjct: 192 QGNWRW 197
|
This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster.It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes. Length = 598 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 8/136 (5%)
Query: 106 KFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYK 165
+ GRK+ ++ LF +L A L+V RLL G G+G A ++ SE +
Sbjct: 76 RIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPR 135
Query: 166 YRGALNIGFQLS-ITIGILIANVLNYFFAKIKGGWGWR--LSLGGAMVPALIITIGSLVL 222
RG + + G +A+V+ A G WR +GG P L++ + L
Sbjct: 136 LRG-TAVSLMYCGVPFGGALASVIGVLAA---GDAAWRHIFYVGGV-GPLLLVPLLMRWL 190
Query: 223 PDTPNSMIERGQRDEA 238
P++ G +
Sbjct: 191 PESRAFAQAAGAGKQR 206
|
Length = 406 |
| >gnl|CDD|233128 TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 68 NSSTNQYCQYNSETLTLFT--SSLYLAALLSSLVASSVT-RKFGRKKSMLFGGVLFFAGA 124
N Y Y LF+ S+ + A L ++ +KFGRK G +L G
Sbjct: 242 NGVQVYYFTYVLGDPELFSYMGSIAIGAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGY 301
Query: 125 LINGFA-QGVWMLIVGRLLLGFGIGFAN 151
LI FA + +++V +L GFG F
Sbjct: 302 LIFFFAGSNLPLILVLIILAGFGQNFVT 329
|
The Glycoside-Pentoside-Hexuronide (GPH):Cation Symporter Family (TC 2.A.2) GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 437 |
| >gnl|CDD|237902 PRK15075, PRK15075, citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.003
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 33/136 (24%)
Query: 106 KFGRKKSMLFGGVLFFAG----ALINGFAQ-GVW---MLIVGRLLLGFGIGFANQSVPLY 157
+ GR+K ++ + +G A + G+A G+ ++++GRLL GF G V +Y
Sbjct: 82 RVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVY 141
Query: 158 LSEMAPYKYRGALNIGF---------QLSITIGILIANVLNYFFAKIK-GGWGWRLSLGG 207
L+E+A + GF Q+++ L+ +LN + + + WGWR
Sbjct: 142 LAEIATPGRK-----GFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWR----- 191
Query: 208 AMVPALIITIGSLVLP 223
+P L IG L++P
Sbjct: 192 --IPFL---IGCLIVP 202
|
Length = 434 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 336 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.98 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.97 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.97 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.96 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.96 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.96 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.95 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.95 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.95 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.94 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.94 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.94 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.94 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.93 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.93 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.93 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.93 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.93 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.93 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.93 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.93 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.93 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.92 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.92 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.92 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.92 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.91 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.91 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.91 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.91 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.9 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.9 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.9 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.9 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.9 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.9 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.9 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.89 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.89 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.89 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.89 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.89 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.89 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.89 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.88 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.88 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.88 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.88 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.88 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.88 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.88 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.88 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.88 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.87 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.87 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.87 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.86 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.86 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.86 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.86 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.85 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.85 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.85 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.85 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.85 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.85 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.84 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.84 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.83 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.83 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.83 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.83 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.82 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.81 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.81 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.8 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.78 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.78 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.78 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.78 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.78 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.77 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.76 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.76 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.76 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.75 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.74 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.74 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.71 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.71 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.71 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.7 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.7 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.67 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.64 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.63 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.63 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.62 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.6 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.59 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.58 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.58 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.57 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.55 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.55 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.53 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.53 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.52 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.51 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.5 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.5 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.47 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.46 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.46 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.46 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.44 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.43 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.43 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.42 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.42 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.42 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.42 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.42 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.42 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.41 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.4 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.4 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.39 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.39 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.39 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.38 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.38 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.38 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.38 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.38 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.37 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.37 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.36 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.34 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.31 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.31 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.3 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.29 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.29 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.29 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.28 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.28 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.27 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.27 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.27 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.25 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.25 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.25 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.23 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.23 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.23 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.22 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.22 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.22 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.2 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.17 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.16 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.16 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.16 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.15 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.14 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.14 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.13 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.13 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.13 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.13 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.12 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.12 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.12 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.12 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.11 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.11 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.09 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.09 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.09 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.09 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.08 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.08 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.07 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.07 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.06 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.06 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.05 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.04 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.03 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.03 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.03 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.03 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.03 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.02 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.01 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.0 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.99 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.98 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.97 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.96 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.96 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.95 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.95 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.92 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.89 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.88 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.88 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.88 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.85 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.83 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.8 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.79 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.75 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.72 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.69 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.66 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.65 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.62 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.6 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.59 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.58 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.57 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.57 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.54 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.53 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.45 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.42 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.38 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.38 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.35 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.28 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.28 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.22 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.21 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.19 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.18 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.11 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.08 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.99 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.96 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 97.77 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.74 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.72 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.71 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 97.66 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.52 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.47 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.47 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 97.46 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 97.42 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.35 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 97.33 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.07 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.04 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.03 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.9 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 96.58 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 96.55 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.47 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 96.34 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 96.25 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 96.23 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 96.19 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 95.61 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 95.61 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 95.46 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 93.47 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 93.19 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 90.58 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 90.48 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 90.24 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 89.16 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 88.52 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 87.75 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 87.36 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 85.22 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 84.34 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 83.19 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 81.42 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.9e-30 Score=229.62 Aligned_cols=313 Identities=30% Similarity=0.539 Sum_probs=250.6
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhhhccccccccchhhHHhhhccchhhhcccCCCCcccccCCCchhHHHHHHHHHHHHH
Q 043735 16 PGKLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQANSSTNQYCQYNSETLTLFTSSLYLAALL 95 (336)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i 95 (336)
+++..++....+..++++.+.+||+.+..+.. -...++++.+.+.++++.+.-++.+ +...+.+.+++.+|.++
T Consensus 2 ~~~~t~~L~~~~~~~~~gsf~~Gy~~~~iNap---~~~i~~f~n~t~~~r~g~~~s~~~~---~~lwS~~vs~f~iG~~~ 75 (485)
T KOG0569|consen 2 KPKLTRRLLLAVIVATLGSFQFGYNIGVVNAP---QELIKSFINETLIERYGLPLSDSTL---DLLWSLIVSIFFIGGMI 75 (485)
T ss_pred CCCccHHHHHHHHHHHHhchhhhhhheecCch---HHHHHHHHHHHHHHhcCCCCChHHH---HHHHHHHHHHHHHHHHH
Confidence 34566777888888888889999999887533 3566677666665554322222211 22357889999999999
Q ss_pred HHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHhhhhhhhhhhHHHHhhhcCCCccchhHHH
Q 043735 96 SSLVASSVTRKFGRKKSMLFGGVLFFAGALINGF---AQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNI 172 (336)
Q Consensus 96 ~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~---~~~~~~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 172 (336)
|++..|+++||+|||..+.++.++..++.++..+ .+++.+++++|++.|+..|......+.++.|..|++.||....
T Consensus 76 Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~ 155 (485)
T KOG0569|consen 76 GSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGT 155 (485)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHH
Confidence 9999999999999999999999888888877665 4678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCCChHHHHh-cCChHHHHHHHHHHcCCCcc
Q 043735 173 GFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIE-RGQRDEAREKLRKIRGVNDV 251 (336)
Q Consensus 173 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 251 (336)
..+.+..+|..++..++..-. ......|++.+....+++++..+...++||+|||+.. ++++++|++.++..++++++
T Consensus 156 ~~~~~~~~g~ll~~~~~l~~i-lGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~ 234 (485)
T KOG0569|consen 156 LLQIGVVIGILLGQVLGLPSL-LGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDV 234 (485)
T ss_pred HHHHHHHHHHHHHHHHccHHh-cCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcc
Confidence 999999999999976653222 1113469999999999999988888999999999987 78999999999999999876
Q ss_pred hHHHHHHHHHHHh---ccccccchhhhccc-cchhHHHHHHHHHHHHHhhchhHHHHcHHHHHHhcCCCCcHHHHHHHHH
Q 043735 252 DEEFNDLVAASEA---SKQVEHPWGNLLKR-KYRPHLTMAILIPFFQQLTGINVIMFYAPVLFNTIGFGNDASLMSAVIT 327 (336)
Q Consensus 252 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~~~~~~~~~ 327 (336)
+++.++..++.++ +++++.+.++++++ ..++...+.+.+....++.+.+...+|...++++.|++.+++.+++...
T Consensus 235 ~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~ 314 (485)
T KOG0569|consen 235 EAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGI 314 (485)
T ss_pred hhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 6665544333322 22356778899885 4555566777777888999999999999999999999999999999888
Q ss_pred hHhhheec
Q 043735 328 GLVNACAT 335 (336)
Q Consensus 328 ~~~~~~~~ 335 (336)
++.+++.+
T Consensus 315 g~v~~~~t 322 (485)
T KOG0569|consen 315 GIVNLLST 322 (485)
T ss_pred HHHHHHHH
Confidence 88877654
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-27 Score=221.30 Aligned_cols=299 Identities=28% Similarity=0.548 Sum_probs=212.9
Q ss_pred CchHHHHHHHHHHHHHHHHhhhccccccccchhhHHhhhccchhhhcccCCCCcccccCCCchhHHHHHHHHHHHHHHHH
Q 043735 19 LTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQANSSTNQYCQYNSETLTLFTSSLYLAALLSSL 98 (336)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~ 98 (336)
..+++...+.++.++.+.++|+...++.. .|.+.+.+. ++...+++.+..+.+++.+.+.++..++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----------~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~ 73 (479)
T PRK10077 6 NSSYIFSITLVATLGGLLFGYDTAVISGT--VESLNTVFV----------APQNLSESAANSLLGFCVASALIGCIIGGA 73 (479)
T ss_pred cchHHHHHHHHHHHHHHhcCcccceehHh--HHHHHHHhc----------ccccccccCChhHHHHHHHHHHHHHHHHHH
Confidence 34556667777778889999999887754 366666664 334556689999999999999999999999
Q ss_pred HhHHhhhhhchhHHHHHHHHHHHHHHHHHHhh------------hhHHHHHHHHHHHhhhhhhhhhhHHHHhhhcCCCcc
Q 043735 99 VASSVTRKFGRKKSMLFGGVLFFAGALINGFA------------QGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKY 166 (336)
Q Consensus 99 ~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~------------~~~~~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~~ 166 (336)
++|+++||+|||++++.+.++.+++.+.+++. +.++.+++.|+++|++.|..++....+++|++|+++
T Consensus 74 ~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~ 153 (479)
T PRK10077 74 LGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI 153 (479)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh
Confidence 99999999999999999999999888877652 235678899999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhcc-----cCCchhHHHHhhhHHHHHHHHHhhcccCCChHHHHhcCChHHHHHH
Q 043735 167 RGALNIGFQLSITIGILIANVLNYFFAKI-----KGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEAREK 241 (336)
Q Consensus 167 r~~~~~~~~~~~~~g~~~~~~l~~~~~~~-----~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 241 (336)
|++++++.+.+..+|..+++.++..+... ...++||+.|++.+++.++..+..+++||+|+++..+++.+++++.
T Consensus 154 rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~ 233 (479)
T PRK10077 154 RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGI 233 (479)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHH
Confidence 99999999999999999988777655421 1246899999988777776666667899999988777776666555
Q ss_pred HHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHHHhcCCCCcHHH
Q 043735 242 LRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFNTIGFGNDASL 321 (336)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~~~ 321 (336)
.++..+.++.+...++.++..+.+.. ..+..+. ..............+....+++...++.|.+.++.|++...+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~ 309 (479)
T PRK10077 234 LRKIMGNTLATQALQEIKHSLDHGRK---TGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIAL 309 (479)
T ss_pred HHHHcCChhHHHHHHHHHHHHHHhhh---hhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHH
Confidence 55544333222222222111111110 0111111 1111112222223344455566677888999999999887777
Q ss_pred HHHHHHhHhhhe
Q 043735 322 MSAVITGLVNAC 333 (336)
Q Consensus 322 ~~~~~~~~~~~~ 333 (336)
+.....++..++
T Consensus 310 ~~~~~~~~~~~i 321 (479)
T PRK10077 310 LQTIIVGVINLT 321 (479)
T ss_pred HHHHHHHHHHHH
Confidence 666655555444
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=229.29 Aligned_cols=288 Identities=19% Similarity=0.251 Sum_probs=206.7
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHhhhccccccccchhhHHhhhccchhhhcccCCCCcccccCCCchhHHHHHHHHHHHH
Q 043735 15 YPGKLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQANSSTNQYCQYNSETLTLFTSSLYLAAL 94 (336)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 94 (336)
++.+..++++..+.++.++.+.+||+....+... |.+.+++. ..+.+.+..+.+++.+...++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~--~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~ig~~ 70 (502)
T TIGR00887 6 DTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVT--KMLGYVYY-------------HGKGPLPSSVSAAVNGSASIGTL 70 (502)
T ss_pred hccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhc-------------cCcccchHHHHHHHHHHHHHHHH
Confidence 3456667788888888999999999998876553 33322211 01124566778999999999999
Q ss_pred HHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHHhhhhhhhhhhHHHHhhhcCCCccch
Q 043735 95 LSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQG------VWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRG 168 (336)
Q Consensus 95 i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~~r~ 168 (336)
++++++|+++||+|||+++.++.++..++.++++++++ ++.++++|++.|++.|...+....++.|++|+++|+
T Consensus 71 ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg 150 (502)
T TIGR00887 71 AGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRG 150 (502)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHH
Confidence 99999999999999999999999999999988887765 688999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcc--------------------cCCchhHHHHhhhHHHHHHHHHhhcccCCChHH
Q 043735 169 ALNIGFQLSITIGILIANVLNYFFAKI--------------------KGGWGWRLSLGGAMVPALIITIGSLVLPDTPNS 228 (336)
Q Consensus 169 ~~~~~~~~~~~~g~~~~~~l~~~~~~~--------------------~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~ 228 (336)
++.++.+....+|..+++.+...+... ..+++||+.+.+.++++++..+..+++||+|+|
T Consensus 151 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~ 230 (502)
T TIGR00887 151 AMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRY 230 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999998887765321 012579999998888888777777889999999
Q ss_pred HHhcCChH-HHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccc---hhHHHHHHHHHHHHHhhchhHHHH
Q 043735 229 MIERGQRD-EAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKY---RPHLTMAILIPFFQQLTGINVIMF 304 (336)
Q Consensus 229 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 304 (336)
+..+++++ ++.+.+.+....+..+. .++.++..+++++.+.++++++++.. ..+..+.....+++....++....
T Consensus 231 l~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 309 (502)
T TIGR00887 231 TADVAKDVEQAASDMSAVLQVKIEAE-PDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNL 309 (502)
T ss_pred HHHhCcchHHHHHHHHHHhccccccC-cccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 98776654 35555554433221110 11111000111111235777765322 112233333333334445567778
Q ss_pred cHHHHHHhcCCCCc
Q 043735 305 YAPVLFNTIGFGND 318 (336)
Q Consensus 305 ~~~~~~~~~G~s~~ 318 (336)
|.|.++++.|++..
T Consensus 310 ~~p~i~~~~G~~~~ 323 (502)
T TIGR00887 310 NQKVILSAIGYSPP 323 (502)
T ss_pred ccHHHHHHHcCCCC
Confidence 89999988898754
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-27 Score=219.50 Aligned_cols=302 Identities=40% Similarity=0.720 Sum_probs=233.3
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHhhhccccccccchhhHHhhhccchhhhcccCCCCcccccCCC--chhHHHHHHHHHH
Q 043735 15 YPGKLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQANSSTNQYCQYNS--ETLTLFTSSLYLA 92 (336)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~~~~~~~~~ 92 (336)
++.+........+..+.++.+.+||+ +..+....+....++..... +...+. .+.+++.+...++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~fg~~-g~~g~~s~~~~~~~~~~~~~------------~~~~~~~~~~~s~~~s~~~lg 101 (513)
T KOG0254|consen 35 KPTMISPFVILLALVAALGGLLFGYD-GDIGGISGALDFLQRFASLY------------DLSTGEYSVRQGLLTSILNLG 101 (513)
T ss_pred ccccCceehHHHHHHHHHHHHHhCcc-cccccchhhHHHHHhccccc------------ccccchhHHHHHHHHHHHHHH
Confidence 34455567788888888999999998 43333333333333321110 001112 4569999999999
Q ss_pred HHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHHHHhhhcCCCccchhHHH
Q 043735 93 ALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNI 172 (336)
Q Consensus 93 ~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 172 (336)
..++++++|+++|++|||+.++++.+++.++.+++++++++.+++++|++.|+|.|....+.+.+++|..|++.||...+
T Consensus 102 a~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~ 181 (513)
T KOG0254|consen 102 ALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVS 181 (513)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCCChHHHHhcCChHHHHHHHHHHcC--CCc
Q 043735 173 GFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEAREKLRKIRG--VND 250 (336)
Q Consensus 173 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~--~~~ 250 (336)
..+....+|..++..++....+. . ++||..+.+..+++++..+..+++||+|+|+..+++.+++++.+.+.++ +.+
T Consensus 182 ~~~l~~~~Gi~~~~~~~~~~~~~-~-~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~ 259 (513)
T KOG0254|consen 182 LYQLFITIGILLGYCINYGTSKV-Y-AGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPED 259 (513)
T ss_pred HHHHHHHHHHHHHHHHhhhhccC-C-ccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcc
Confidence 99999999988885555554432 1 5799999999999888888888899999999999999999999998888 334
Q ss_pred chHHHHHHHHHHHhc---cccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHHHhcCCCCcHHHHHHHHH
Q 043735 251 VDEEFNDLVAASEAS---KQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFNTIGFGNDASLMSAVIT 327 (336)
Q Consensus 251 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~~~~~~~~~ 327 (336)
.+.+.++.+.+...+ .+.+..+.+++++...++..+...+..+.++.+++...+|.+.+++..|++... .....+.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~ 338 (513)
T KOG0254|consen 260 VEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIIL 338 (513)
T ss_pred hHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHH
Confidence 444444444222111 122224667777667777888888899999999999999999999999987654 3444444
Q ss_pred hHhhh
Q 043735 328 GLVNA 332 (336)
Q Consensus 328 ~~~~~ 332 (336)
++..+
T Consensus 339 ~~v~~ 343 (513)
T KOG0254|consen 339 GVVNF 343 (513)
T ss_pred HHHHH
Confidence 44443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-27 Score=223.53 Aligned_cols=272 Identities=21% Similarity=0.252 Sum_probs=211.6
Q ss_pred chHHHHHHHHHHHHHHHHhhhccccccccchhhHHhhhccchhhhcccCCCCcccccCCCchhHHHHHHHHHHHHHHHHH
Q 043735 20 TPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQANSSTNQYCQYNSETLTLFTSSLYLAALLSSLV 99 (336)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~ 99 (336)
.+++|.+.+++.++.+.++++...++.. +|.+.+++ |++..+.+++.++.+++.++++++
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~i--lp~i~~~~------------------gls~~~~g~l~s~~~lG~iiG~li 221 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFV--LPSAEKDL------------------CIPDSGKGMLGLIVYLGMMVGAFF 221 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777788888888888765533 45554444 889999999999999999999999
Q ss_pred hHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHH
Q 043735 100 ASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSIT 179 (336)
Q Consensus 100 ~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 179 (336)
+|+++||+|||+++++++++.+++.++++++++++.++++|++.|++.|+..+....++.|++|+++|++..+++..+..
T Consensus 222 ~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~ 301 (742)
T TIGR01299 222 WGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWM 301 (742)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccC----------CchhHHHHhhhHHHHHHHHHhhcccCCChHHHHhcCChHHHHHHHHHHcCCC
Q 043735 180 IGILIANVLNYFFAKIKG----------GWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEAREKLRKIRGVN 249 (336)
Q Consensus 180 ~g~~~~~~l~~~~~~~~~----------~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (336)
+|.++++.++..+....+ ..+||+.+++.+++.++.++..+++||+|+|+..+++.+++.+.++++...+
T Consensus 302 iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n 381 (742)
T TIGR01299 302 IGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTN 381 (742)
T ss_pred HHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 999999988766654211 1379999998888877777777889999999999999999999888887655
Q ss_pred cch----H-H--HHHHHHHHHh----c-cccc-------------------cchhhhccccchhHHHHHHHHHHHHHhhc
Q 043735 250 DVD----E-E--FNDLVAASEA----S-KQVE-------------------HPWGNLLKRKYRPHLTMAILIPFFQQLTG 298 (336)
Q Consensus 250 ~~~----~-~--~~~~~~~~~~----~-~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (336)
... . . .++.+..... + ++.. .+++++++++.++++++ +.+.+++...+
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~-l~~~wf~~~~~ 460 (742)
T TIGR01299 382 MRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIK-LMGVWFTLSFG 460 (742)
T ss_pred CCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHH-HHHHHHHHHHH
Confidence 321 1 1 0111110000 0 0000 12445566655555444 44456666668
Q ss_pred hhHHHHcHHHHHHh
Q 043735 299 INVIMFYAPVLFNT 312 (336)
Q Consensus 299 ~~~~~~~~~~~~~~ 312 (336)
++++..|+|.++++
T Consensus 461 yygl~~w~P~~~~~ 474 (742)
T TIGR01299 461 YYGLSVWFPDMIKH 474 (742)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998754
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=214.17 Aligned_cols=305 Identities=37% Similarity=0.665 Sum_probs=212.9
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHhhhccccccccchhhHHhhhccchhhhcccCCCCcccccCCCchhHHHHHHHHHHHH
Q 043735 15 YPGKLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQANSSTNQYCQYNSETLTLFTSSLYLAAL 94 (336)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 94 (336)
...+..|+.+..+.++.++.+..+++...++... |....++.- .. ..+-+.+..+.+++.+++.++..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--------~~--~~~~~~~~~~~~~~~~~~~~~~~ 85 (481)
T TIGR00879 18 GLGSTYWKVALLSLIAAIGGLMFGYDTGVIGGAL--ALPAFEFKF--------TS--ANSDSYSSSLWGLVVSIFLVGGF 85 (481)
T ss_pred CCCcccHHHHHHHHHHHHHHHhcccccchhhhhh--hcHHHHHhc--------CC--cccCCCChhHHHHHHHHHHHHHH
Confidence 3344556666677777777788888877765443 333333210 00 11114678999999999999999
Q ss_pred HHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHhhhhhhhhhhHHHHhhhcCCCccchhHH
Q 043735 95 LSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQ---GVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALN 171 (336)
Q Consensus 95 i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~---~~~~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~ 171 (336)
++++++|+++||+|||+++..+.++..++.+++.+.. +++.+++.|++.|++.+...+....++.|++|+++|+++.
T Consensus 86 i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 165 (481)
T TIGR00879 86 IGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALT 165 (481)
T ss_pred HHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhh
Confidence 9999999999999999999999999999998885543 4558999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH---HHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCCChHHHHhcCChHHHHHHHHHHcCC
Q 043735 172 IGFQLSITIGILIANVLN---YFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEAREKLRKIRGV 248 (336)
Q Consensus 172 ~~~~~~~~~g~~~~~~l~---~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 248 (336)
++++.+..+|..+++.++ ....+ ..+||+.|++.++..++..+..+++||+|++...+++.+++++..++....
T Consensus 166 ~~~~~~~~~G~~~~~~~~~~~~~~~~---~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (481)
T TIGR00879 166 SLYQLAITFGILVAYGFGSGKVSLNN---TLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGT 242 (481)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCC---CccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCC
Confidence 999999999999999988 44333 358999999876666666666678899988776666655555544443333
Q ss_pred CcchHHHHH----HHH-HHHhccccccchhhhcccc--chhHHHHHHHHHHHHHhhchhHHHHcHHHHHHhcCCCCcHHH
Q 043735 249 NDVDEEFND----LVA-ASEASKQVEHPWGNLLKRK--YRPHLTMAILIPFFQQLTGINVIMFYAPVLFNTIGFGNDASL 321 (336)
Q Consensus 249 ~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~~~ 321 (336)
++.+.+..+ .+. ...+.+..+.++.+.++.. ..++.++...+..+..........++.|.+.++.|++..+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 322 (481)
T TIGR00879 243 SGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAF 322 (481)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHH
Confidence 222111111 000 0011111122244444322 234555555555555555566678888999999999998888
Q ss_pred HHHHHHhHhhhee
Q 043735 322 MSAVITGLVNACA 334 (336)
Q Consensus 322 ~~~~~~~~~~~~~ 334 (336)
....+..+..+++
T Consensus 323 ~~~~~~~~~~~~~ 335 (481)
T TIGR00879 323 LVSIIVGAVNFAF 335 (481)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666554
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=210.35 Aligned_cols=257 Identities=16% Similarity=0.215 Sum_probs=181.8
Q ss_pred CcccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhh
Q 043735 71 TNQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFA 150 (336)
Q Consensus 71 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~ 150 (336)
+++++|+|.++.+++.+++.+++.+++++.|+++||+|||+++..+.++..+++++++++++++.+++.|++.|++.+..
T Consensus 34 l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 113 (412)
T TIGR02332 34 MGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGF 113 (412)
T ss_pred hHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhH
Confidence 35566999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcc---cCCchhHHHHhhhHHHHHHHHH-hhcccCCCh
Q 043735 151 NQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKI---KGGWGWRLSLGGAMVPALIITI-GSLVLPDTP 226 (336)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~---~~~~~w~~~~~~~~~~~~~~~~-~~~~~~e~~ 226 (336)
.+....++.|++|+++|++++++++.+..+|..+++++++.+.+. .+..|||+.|++.+++.++..+ ..+++||+|
T Consensus 114 ~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p 193 (412)
T TIGR02332 114 LPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSP 193 (412)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 999989999999999999999999999999999999999887642 1235899999988777665444 446778887
Q ss_pred HHHHhcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcH
Q 043735 227 NSMIERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYA 306 (336)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (336)
+.... .++++.+...+..+......++.+ +.. ++.+..+++.+++...+. ++...+.+++....++.+..|.
T Consensus 194 ~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 265 (412)
T TIGR02332 194 DKAKW-LDEEDKKALKEMIDNDQLTLEQPE---GAF---AHAAMPQRSMLREIFTPA-IMLYTLAYFCLTNTLSAINIWT 265 (412)
T ss_pred ccCCC-CCHHHHHHHHHHHHhccccccccc---ccc---ccccccHHHHHHHhcChH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 42100 001111111111110000000000 000 000111111122222223 4444555556666677888999
Q ss_pred HHHHHhc--CCCCcHHHHHHHHHhHhhheec
Q 043735 307 PVLFNTI--GFGNDASLMSAVITGLVNACAT 335 (336)
Q Consensus 307 ~~~~~~~--G~s~~~~~~~~~~~~~~~~~~~ 335 (336)
|.++++. |++..+++.......+..+++.
T Consensus 266 p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~ 296 (412)
T TIGR02332 266 PQILQSFNQGSSNIMIGLLAAIPQFCTIFGM 296 (412)
T ss_pred HHHHHhcCCCCcHHHhHHHhhHHHHHHHHHH
Confidence 9999874 6777787877777777666543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-27 Score=204.28 Aligned_cols=245 Identities=18% Similarity=0.175 Sum_probs=197.9
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhh
Q 043735 72 NQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFAN 151 (336)
Q Consensus 72 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~ 151 (336)
.++.++|.+|.|++.+.+++.+.++..+.|.++||.+.|+.+..++++.++++++++++++.+.+.++.+++|+..|...
T Consensus 56 ~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gw 135 (448)
T COG2271 56 IEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGW 135 (448)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCC
Confidence 34448999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHH--HHhhcccCCchhHHHHhhhHHHHHHHHHhh-cccCCChHH
Q 043735 152 QSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLN--YFFAKIKGGWGWRLSLGGAMVPALIITIGS-LVLPDTPNS 228 (336)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~--~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~ 228 (336)
|.+..++..|+|+++||+..++++++.++|+.+.|++. +++.. +.+||..|++.++++++..++. +..+|+|+.
T Consensus 136 pp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~---~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs 212 (448)
T COG2271 136 PPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAF---HGGWRAAFYFPGIIAIIVALILLFLLRDRPQS 212 (448)
T ss_pred cHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHh---ccchhHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 99999999999999999999999999999999999998 66665 3479999999888877666655 567888842
Q ss_pred HHhcCChHHHHHHHHHHcCCCcchHHHHHHHHH-HHhccccccchhhhc-cccchhHHHHHHHHHHHHHhhchhHHHHcH
Q 043735 229 MIERGQRDEAREKLRKIRGVNDVDEEFNDLVAA-SEASKQVEHPWGNLL-KRKYRPHLTMAILIPFFQQLTGINVIMFYA 306 (336)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (336)
.-- ++.++..++..+. +++++.+..+.++++ +....++..|.+++...+....-++++.|.
T Consensus 213 ~GL-----------------P~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~ 275 (448)
T COG2271 213 EGL-----------------PPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWG 275 (448)
T ss_pred cCC-----------------CCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhH
Confidence 100 0011110010010 111111113444444 455667788888888888888899999999
Q ss_pred HHHHHh-cCCCCcHHHHHHHHHhHhhheecC
Q 043735 307 PVLFNT-IGFGNDASLMSAVITGLVNACATL 336 (336)
Q Consensus 307 ~~~~~~-~G~s~~~~~~~~~~~~~~~~~~~~ 336 (336)
|.|+.+ .|+|..++....+.+-+++++|++
T Consensus 276 p~YL~e~k~~s~~~a~~a~~lfE~agl~G~L 306 (448)
T COG2271 276 PLYLSEVKGFSLVKANWAISLFEVAGLPGTL 306 (448)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhHHHH
Confidence 999955 799999999999999999988763
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-26 Score=200.36 Aligned_cols=227 Identities=19% Similarity=0.286 Sum_probs=183.7
Q ss_pred CCCcccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhh
Q 043735 69 SSTNQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIG 148 (336)
Q Consensus 69 ~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~ 148 (336)
|++.+++|+|..+.|++.+++.++..++.++...+.||+.||++++..+.++.++++++++++|++.+.++|++.|+..|
T Consensus 37 p~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G 116 (394)
T COG2814 37 PPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHG 116 (394)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 33455559999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhh-cccCCChH
Q 043735 149 FANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGS-LVLPDTPN 227 (336)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~ 227 (336)
..++....+..+..|+++|++++++...+..++..+|.+++.++.+. +|||+.|+..+.++++..+.. ..+| |+
T Consensus 117 ~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~---~GWR~~F~~ia~l~ll~~~~~~~~lP--~~ 191 (394)
T COG2814 117 VFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQL---FGWRATFLAIAVLALLALLLLWKLLP--PS 191 (394)
T ss_pred HHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHhCC--Cc
Confidence 99999999999999999999999999999999999999999999984 679999999888887776655 4677 21
Q ss_pred HHHhcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHH
Q 043735 228 SMIERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAP 307 (336)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (336)
. .+++.+.+.++.++..++++.+.............+..+.|..|
T Consensus 192 ~-----------------------------------~~~~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P 236 (394)
T COG2814 192 E-----------------------------------ISGSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRP 236 (394)
T ss_pred c-----------------------------------CCCCCCcchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHH
Confidence 0 00111122222223233334444444444444444445555666
Q ss_pred HHHHhcCCCCcHHHHHHHHHhHhhheec
Q 043735 308 VLFNTIGFGNDASLMSAVITGLVNACAT 335 (336)
Q Consensus 308 ~~~~~~G~s~~~~~~~~~~~~~~~~~~~ 335 (336)
.+.+..|++.+..++....++++.++|+
T Consensus 237 ~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn 264 (394)
T COG2814 237 FLESVAGFSVSAVSLVLLAFGIAGFIGN 264 (394)
T ss_pred HHHHccCCCHhHHHHHHHHHHHHHHHHH
Confidence 6667789999999999999999988875
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-25 Score=205.90 Aligned_cols=267 Identities=16% Similarity=0.264 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHHhhhccccccccchhhHHhhhccchhhhcccCCCCcccccCCCc--hhHH--HHHHHHHHHHHHHHHhH
Q 043735 26 TCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQANSSTNQYCQYNSE--TLTL--FTSSLYLAALLSSLVAS 101 (336)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~~--~~~~~~~~~~i~~~~~g 101 (336)
...++.++.+.++||...++.. .|...+.+.|+ .++. ..+. +.++.++++.+|++++|
T Consensus 17 ~~~~~~~g~~~~~~d~~~~~~~--~~~i~~~~~~~----------------~~~~~~~~~~~~~~~~~~l~~~ig~~~~G 78 (490)
T PRK10642 17 AITAASLGNAMEWFDFGVYGFV--AYALGKVFFPG----------------ADPSVQMIAALATFSVPFLIRPLGGLFFG 78 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhCCC----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567889999999887644 46555555321 1111 1111 25778899999999999
Q ss_pred HhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHH--------HHHHHHHHhhhhhhhhhhHHHHhhhcCCCccchhHHHH
Q 043735 102 SVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWM--------LIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIG 173 (336)
Q Consensus 102 ~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~--------~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 173 (336)
+++||+|||+++.++.++++++++++++++++.. ++++|+++|++.|..++....++.|++|+++||+..++
T Consensus 79 ~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~ 158 (490)
T PRK10642 79 MLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSW 158 (490)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHH
Confidence 9999999999999999999999999999999864 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc-----CCchhHHHHhhhHHHHHHHHHhhcccCCChHHHHhcCChHHHHHHHHHHcCC
Q 043735 174 FQLSITIGILIANVLNYFFAKIK-----GGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEAREKLRKIRGV 248 (336)
Q Consensus 174 ~~~~~~~g~~~~~~l~~~~~~~~-----~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 248 (336)
...+..+|..+++.+...+.... .++|||+.|++.+++.++..++...+||+|++...+++.++. .
T Consensus 159 ~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~-------~-- 229 (490)
T PRK10642 159 LDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQG-------D-- 229 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhh-------c--
Confidence 99888888888876665443211 147899999987766665555556789998764221110000 0
Q ss_pred CcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHHH-hcCCCCcHHHHHHHHH
Q 043735 249 NDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFN-TIGFGNDASLMSAVIT 327 (336)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~s~~~~~~~~~~~ 327 (336)
++...++++.++++++++ ..+. +.......++....++....|.|.+++ ..|++..++.......
T Consensus 230 ------------~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~ 295 (490)
T PRK10642 230 ------------REGLQDGPKVSFKEIATK-HWRS-LLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAI 295 (490)
T ss_pred ------------cccccccccCCHHHHHHH-hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 000001112345555543 2222 222222233334456777889999885 5799887777666655
Q ss_pred hHhhhe
Q 043735 328 GLVNAC 333 (336)
Q Consensus 328 ~~~~~~ 333 (336)
.++.++
T Consensus 296 ~~~~~~ 301 (490)
T PRK10642 296 MIGMLF 301 (490)
T ss_pred HHHHHH
Confidence 555443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=205.36 Aligned_cols=242 Identities=14% Similarity=0.144 Sum_probs=175.6
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhh
Q 043735 74 YCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQS 153 (336)
Q Consensus 74 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~ 153 (336)
++|+|.++.+++.+.+.+++.+++++.|+++||+|||+++.++.++.+++++++.++++++.+++.|++.|++.|...+.
T Consensus 52 ~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~ 131 (434)
T PRK11663 52 DLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPV 131 (434)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchH
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred HHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHH-hhcccCCChHHHHhc
Q 043735 154 VPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITI-GSLVLPDTPNSMIER 232 (336)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~ 232 (336)
...++.|++|+++|++++++++.+..+|..+++.+.+.+.+ .++||+.|.+.+++.++..+ ..+++||+|++....
T Consensus 132 ~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~---~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~ 208 (434)
T PRK11663 132 CAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL---HYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLP 208 (434)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCC
Confidence 99999999999999999999999999999999999998876 35799999887776554433 345678876432100
Q ss_pred CChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccc-cchhHHHHHHHHHHHHHhhchhHHHHcHHHHH-
Q 043735 233 GQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKR-KYRPHLTMAILIPFFQQLTGINVIMFYAPVLF- 310 (336)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 310 (336)
...+..+ +.+ + .+++ .++++.++++.++. ..+++.++...+..+........+..|.|.++
T Consensus 209 ~~~~~~~----------~~~----~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~ 271 (434)
T PRK11663 209 SVGEWRH----------DAL----E--LAQQ-QEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMS 271 (434)
T ss_pred Ccccccc----------ccc----c--cchh-ccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 000 0 0000 00011122232221 11222233333334444444556777889888
Q ss_pred HhcCCCCcHHHHHHHHHhHhhheec
Q 043735 311 NTIGFGNDASLMSAVITGLVNACAT 335 (336)
Q Consensus 311 ~~~G~s~~~~~~~~~~~~~~~~~~~ 335 (336)
++.|++..+++...+...+++++++
T Consensus 272 ~~~g~s~~~a~~~~~~~~~~~~~g~ 296 (434)
T PRK11663 272 ETLGVDLVTANSAVSMFELGGFIGA 296 (434)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHH
Confidence 5679999999888888877776654
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.5e-25 Score=199.90 Aligned_cols=260 Identities=19% Similarity=0.213 Sum_probs=179.7
Q ss_pred chHHHHHHHHHHHHHHHHhhhccccccccchhhHHhhhccchhhhcccCCCCcccccCCCch---hHHHHHHHHHHHHHH
Q 043735 20 TPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQANSSTNQYCQYNSET---LTLFTSSLYLAALLS 96 (336)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~~~~~~~~~~~~i~ 96 (336)
..+++.....+.++.+.+.||...++.. .|.+.+++.|+ +.+..+ .+.+.+..+++..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~ig 79 (432)
T PRK10406 17 TRRRIWAIVGASSGNLVEWFDFYVYSFC--SLYFAHIFFPS---------------GNTTTQLLQTAGVFAAGFLMRPIG 79 (432)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCCC---------------CCchHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556667778899998886544 46665665321 223333 344455566666799
Q ss_pred HHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHhhhhhhhhhhHHHHhhhcCCCccch
Q 043735 97 SLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVW--------MLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRG 168 (336)
Q Consensus 97 ~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~--------~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~~r~ 168 (336)
++++|+++||+|||+++..+.++++++++.+++++++. .+++.|+++|++.|..++....++.|++|+++|+
T Consensus 80 ~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 159 (432)
T PRK10406 80 GWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKG 159 (432)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCccc
Confidence 99999999999999999999999999999999888763 5889999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccc-----CCchhHHHHhhhHHHHHHHHHhhcccCCChHHHHhcCChHHHHHHHH
Q 043735 169 ALNIGFQLSITIGILIANVLNYFFAKIK-----GGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEAREKLR 243 (336)
Q Consensus 169 ~~~~~~~~~~~~g~~~~~~l~~~~~~~~-----~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 243 (336)
+..++...+...|..+++.+...+.... ..+|||+.|++.+++.++.......+||++++.. +
T Consensus 160 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~--------~---- 227 (432)
T PRK10406 160 FYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQET--------R---- 227 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHH--------h----
Confidence 9999988888888888877655543221 1368999999888777665555455677653200 0
Q ss_pred HHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHHH-hcCCCCcHHHH
Q 043735 244 KIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFN-TIGFGNDASLM 322 (336)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~s~~~~~~ 322 (336)
+. +++.+++++++++ +.+.............++....|.|.++. +.|++..+++.
T Consensus 228 ------------------~~---~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~ 283 (432)
T PRK10406 228 ------------------AL---KEAGSLKGLWRNR---RAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASG 283 (432)
T ss_pred ------------------hh---cccccHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 00 0012345555422 22222222233323456667788998885 57999888777
Q ss_pred HHHHHhHhhh
Q 043735 323 SAVITGLVNA 332 (336)
Q Consensus 323 ~~~~~~~~~~ 332 (336)
..++..+...
T Consensus 284 ~~~i~~~~~~ 293 (432)
T PRK10406 284 IMTAALFVFM 293 (432)
T ss_pred HHHHHHHHHH
Confidence 6665555443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=197.74 Aligned_cols=189 Identities=21% Similarity=0.282 Sum_probs=156.6
Q ss_pred CchHHHHHHHHHHHHHHHHhhhccccccccchhhHHhhhccchhhhcccCCCCcccccCCCchhHHHHHHHHHHHHHHHH
Q 043735 19 LTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQANSSTNQYCQYNSETLTLFTSSLYLAALLSSL 98 (336)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~ 98 (336)
.+++++.....+.++.+.++++....+.. .|.+. +++|+|.++.+++.++..++..++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~------------------~~~~~s~~~~g~~~~~~~~~~~~~~~ 65 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALV--LAEVA------------------GEFGLTTVDAASLISAALISRWFGAL 65 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH------------------HHhCCChhhHHHHHHHHHHHHHHHHH
Confidence 34455555566666667777777655433 24443 34499999999999999999999999
Q ss_pred HhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHHHHhhhcCCCccchhHHHHHHHHH
Q 043735 99 VASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSI 178 (336)
Q Consensus 99 ~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 178 (336)
+.|+++||+|||+++..+.++.+++++++.+.++++.+++.|++.|++.+..++....++.|++|+++|+++.++.+.+.
T Consensus 66 ~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 145 (405)
T TIGR00891 66 MFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGY 145 (405)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCCChHH
Q 043735 179 TIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNS 228 (336)
Q Consensus 179 ~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~ 228 (336)
.+|..+++.+.+.+.+..+ .+||+.+++.+++.++..+....+||++++
T Consensus 146 ~~g~~~~~~l~~~l~~~~~-~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 194 (405)
T TIGR00891 146 AVGAVVAAQVYSLVVPVWG-DGWRALFFISILPIIFALWLRKNIPEAEDW 194 (405)
T ss_pred HHHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHHHHHhCCCChhH
Confidence 9999999999988876432 359999987666655555555667887654
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=202.22 Aligned_cols=220 Identities=22% Similarity=0.396 Sum_probs=174.4
Q ss_pred CCCCcccccCC---CchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 043735 68 NSSTNQYCQYN---SETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLG 144 (336)
Q Consensus 68 ~~~~~~~~~~s---~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g 144 (336)
.+.+.+|++++ ..+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.++.+++++++.+++.|++.|
T Consensus 112 ~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G 191 (505)
T TIGR00898 112 SSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVG 191 (505)
T ss_pred cccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 45678888998 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCC
Q 043735 145 FGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPD 224 (336)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e 224 (336)
++.+...+....++.|++|+++|+.+.++...+..+|.++++.++..+. +||+.+++.+++.++..+..+++||
T Consensus 192 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~------~wr~~~~~~~i~~~~~~~~~~~~~e 265 (505)
T TIGR00898 192 MGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP------DWRWLQLAVSLPTFLFFLLSWFVPE 265 (505)
T ss_pred hhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999998876654 3999999888887777777788999
Q ss_pred ChHHHHhcCChHHHHHHHHHHcCCCcch--HHHHHHH-HHHHhccccccchhhhccccchhHHHHHHHHHHH
Q 043735 225 TPNSMIERGQRDEAREKLRKIRGVNDVD--EEFNDLV-AASEASKQVEHPWGNLLKRKYRPHLTMAILIPFF 293 (336)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (336)
+|+|+..+++.+++.+.+++..+.+..+ .+..+.. +++..+++++.+.+++++++..+...+...+.++
T Consensus 266 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 337 (505)
T TIGR00898 266 SPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWF 337 (505)
T ss_pred ChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHH
Confidence 9999999888888877766554433211 1111111 1111111223466777776655554444444333
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-30 Score=236.53 Aligned_cols=281 Identities=36% Similarity=0.743 Sum_probs=216.6
Q ss_pred HHHHHHHHHhhhccccccccchhhHHhhhccchhhhcccCCCCcccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhc
Q 043735 29 VAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQANSSTNQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFG 108 (336)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G 108 (336)
++.++.+.+||+.+.++.....+.+...+..+.. +.+.+.+..+.+++.+...++..+|++++|.++||+|
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~G 74 (451)
T PF00083_consen 4 IASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSS---------ESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYG 74 (451)
T ss_pred eeHHHHHHHHHHHHHHhhHHhhhhhhhccccccc---------cccccchHHHHHHHHHHHHhhhccccccccccccccc
Confidence 3456668999999887655544433333321111 1111124456789999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHhhhhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHH
Q 043735 109 RKKSMLFGGVLFFAGALINGFAQ---GVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIA 185 (336)
Q Consensus 109 rr~~l~~~~~~~~i~~~~~~~~~---~~~~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~ 185 (336)
||+.+..+.++..++.++.++++ +++.+.++|++.|++.|...+....++.|..|+++|++..+..+....+|..++
T Consensus 75 Rk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~ 154 (451)
T PF00083_consen 75 RKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLA 154 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999 999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCCChHHHHhcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhc
Q 043735 186 NVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEAS 265 (336)
Q Consensus 186 ~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (336)
..+........++++||..+.+..+++++..+..+++||||+|+..+++.+++++.+++.++++..+++.++..++.++.
T Consensus 155 ~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~ 234 (451)
T PF00083_consen 155 SLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKES 234 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccc
Confidence 87765553332235799999988888877777778899999999999999999988888665554444444443333333
Q ss_pred cccccchhhhccccc-hhHHHHHHHHHHHHHhhchhHHHHcHHHHHHhcCCCCc
Q 043735 266 KQVEHPWGNLLKRKY-RPHLTMAILIPFFQQLTGINVIMFYAPVLFNTIGFGND 318 (336)
Q Consensus 266 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~ 318 (336)
++.+.+++++++++. +++......+.......+.+...+|.+.++++.|.+..
T Consensus 235 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~ 288 (451)
T PF00083_consen 235 QESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS 288 (451)
T ss_pred cccceeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 333366778887644 45556666666666666777788888988888888777
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=193.06 Aligned_cols=223 Identities=14% Similarity=0.034 Sum_probs=162.8
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhh
Q 043735 72 NQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFAN 151 (336)
Q Consensus 72 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~ 151 (336)
++++|+|.++.+++.+.+.+++.+++++.|+++||+|||+++....+....+.......++++.+++.|++.|++.+. .
T Consensus 18 ~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~-~ 96 (368)
T TIGR00903 18 AEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPF-L 96 (368)
T ss_pred HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHH-H
Confidence 444499999999999999999999999999999999999887655555444433233337899999999999999886 4
Q ss_pred hhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHH-hhcccCCChHHHH
Q 043735 152 QSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITI-GSLVLPDTPNSMI 230 (336)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~ 230 (336)
......++|++|+++|++++++.+.+..+|..++++++..+.+ .+|||+.|++.++++++..+ ..+++||+|++.
T Consensus 97 ~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~---~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~- 172 (368)
T TIGR00903 97 LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT---AGGLQLLIIPIAAVAAAGIILVLAALPALPFQA- 172 (368)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCC-
Confidence 5556667999999999999999999999999999999999887 46899999987777655444 445789887431
Q ss_pred hcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHH
Q 043735 231 ERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLF 310 (336)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (336)
++. .+. ++ . ..+++++++++ ..+...+..++....++.+..|+|.++
T Consensus 173 --~~~---------------~~~--~~----~------~~~~~~ll~~~----~~~~~~~~~~~~~~~~~~~~~wlp~~L 219 (368)
T TIGR00903 173 --AEG---------------FGF--KD----A------VKEFGALAGRK----DLWIIGAILGFGVALFDNLAIWLEAAL 219 (368)
T ss_pred --CCC---------------cch--HH----H------HHHHHHHHcCh----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000 00 0 01244555543 344455556666667788899999999
Q ss_pred HhcCCCCcHHHHHHHHHhHhhhe
Q 043735 311 NTIGFGNDASLMSAVITGLVNAC 333 (336)
Q Consensus 311 ~~~G~s~~~~~~~~~~~~~~~~~ 333 (336)
++.|++.. .+....+..+.+.+
T Consensus 220 ~~~g~s~~-~~~~~~l~~~~g~~ 241 (368)
T TIGR00903 220 RPAGLEDI-AGDAVALAILAGLI 241 (368)
T ss_pred HHCCCChH-HHHHHHHHHHHHHH
Confidence 88888864 55555554444443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.5e-24 Score=192.21 Aligned_cols=260 Identities=19% Similarity=0.226 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccchhhHHhhhccchhhhcccCCCCcccccCCCchhHHHHHHHHHHHHHHHHHhH
Q 043735 22 FVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQANSSTNQYCQYNSETLTLFTSSLYLAALLSSLVAS 101 (336)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g 101 (336)
+.+....++.+..+.++++....+.. .|.+.+++ |+|+++.+++.+...++..+++++.|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------------------~~s~~~~g~~~~~~~~~~~~~~~~~g 71 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVA--APRMAQEF------------------GLDVAQMGWAFSAGILGLLPGALLGG 71 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666677888877665433 35454444 89999999999999999999999999
Q ss_pred HhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHH
Q 043735 102 SVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIG 181 (336)
Q Consensus 102 ~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 181 (336)
+++||+|||+++..+.++..++.+++.+.++++.+++.|++.|++.+...+....++.|++|+++|++++++.+.+..+|
T Consensus 72 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 151 (406)
T PRK11551 72 RLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFG 151 (406)
T ss_pred HHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHH-hhcccCCChHHHHhcCChHHHHHHHHHHcCCCcchHHHHHHHH
Q 043735 182 ILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITI-GSLVLPDTPNSMIERGQRDEAREKLRKIRGVNDVDEEFNDLVA 260 (336)
Q Consensus 182 ~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (336)
..+++.++..+.+ ..+|++.+++.++..++..+ ...++||+|++...+.+.++.
T Consensus 152 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------------------- 206 (406)
T PRK11551 152 GALASVIGVLAAG---DAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR---------------------- 206 (406)
T ss_pred HHHHHHHHHHHcc---ccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh----------------------
Confidence 9999998877765 35799999877665544443 335678876532111000000
Q ss_pred HHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHHHhcCCCCcHHHHHHHHHhHhhheec
Q 043735 261 ASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFNTIGFGNDASLMSAVITGLVNACAT 335 (336)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~~~~~~~~~~~~~~~~~ 335 (336)
+...+..++....++. .......++.....+....|.|.++++.|++..+.+......++..++++
T Consensus 207 --------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~ 272 (406)
T PRK11551 207 --------APVLRALFGEGRATAT-LLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGS 272 (406)
T ss_pred --------hhhHHHHhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHH
Confidence 0000111111111111 11222223333344566778899998899999999988888877766553
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-24 Score=194.74 Aligned_cols=267 Identities=18% Similarity=0.231 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccchhhHHhhhccchhhhcccCCCCcccccCCCchhHHHHHHHHHHHHHHHHHhHH
Q 043735 23 VTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQANSSTNQYCQYNSETLTLFTSSLYLAALLSSLVASS 102 (336)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~ 102 (336)
++.....+.++.+.++++..... ..+|.+.+ ++|+|+.+.+++.+++.++..+++++.|+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~------------------~~~~s~~~~~~~~~~~~~~~~l~~~~~g~ 75 (426)
T PRK12307 16 QKNALFSAWLGYVFDGFDFMLIF--YIMYLIKA------------------DLGLTDMEGAFLATAAFIGRPFGGALFGL 75 (426)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHH------------------HhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455566677777765543 22344433 34999999999999999999999999999
Q ss_pred hhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHH
Q 043735 103 VTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGI 182 (336)
Q Consensus 103 l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 182 (336)
++||+|||+++..+.++.+++.++++++++++.+++.|++.|++.+..++....++.|++|+++|+++.++...+..+|.
T Consensus 76 l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~ 155 (426)
T PRK12307 76 LADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGN 155 (426)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCCChHHHHhcCChHHHHHHHHHHcCCCcchHHHHHHHHHH
Q 043735 183 LIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEAREKLRKIRGVNDVDEEFNDLVAAS 262 (336)
Q Consensus 183 ~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (336)
.+++.+.+.+.+ ..+||+.+++..+..++........||++++...+. + .+++.. .
T Consensus 156 ~~~~~l~~~l~~---~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~---------~---~~~~~~---------~ 211 (426)
T PRK12307 156 IIAAYFMPSFAE---AYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKL---------S---GKGKHS---------Q 211 (426)
T ss_pred HHHHHHHHHHcc---cCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhh---------h---cccccc---------c
Confidence 999988887766 357999998755443333222233455543211100 0 000000 0
Q ss_pred HhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHHHhcCCCCcHHHHHHHHHhHhhhee
Q 043735 263 EASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFNTIGFGNDASLMSAVITGLVNACA 334 (336)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~~~~~~~~~~~~~~~~ 334 (336)
...+..+.+++++++++..+........ ........+....+.|.++++.|++..+.+...++.+++.+++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g 282 (426)
T PRK12307 212 SAWSVFSLSMKGLFNRAQFPLTLCVFIV-LFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLG 282 (426)
T ss_pred cchhhhhHHHHHHHhhchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 0000011234455554443332222222 2222333344567888888888999888888777777666554
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=189.77 Aligned_cols=221 Identities=22% Similarity=0.298 Sum_probs=168.5
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhh
Q 043735 72 NQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFAN 151 (336)
Q Consensus 72 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~ 151 (336)
.+++|+++++.++..+...++..+++++.|+++||+|||+++..+.++.+++.+++.+.++++.+++.|++.|++.+...
T Consensus 47 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 126 (394)
T PRK10213 47 AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFW 126 (394)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHH
Confidence 34459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhh-cccCCChHHHH
Q 043735 152 QSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGS-LVLPDTPNSMI 230 (336)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~ 230 (336)
+....++.|++|+++|+++.+....+.++|..++|.+++.+.+. ++||+.|++.+++.++..+.. ...||+++.
T Consensus 127 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~---~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~-- 201 (394)
T PRK10213 127 AMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGEL---IGWRNVFNAAAVMGVLCIFWIIKSLPSLPGE-- 201 (394)
T ss_pred HHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHHHHHHCCCCCcc--
Confidence 99999999999999999999999999999999999999999873 579999988776655444333 345654310
Q ss_pred hcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHc-HHHH
Q 043735 231 ERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFY-APVL 309 (336)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 309 (336)
++ +...+.++.++++ +. +...+..++.....+....+ .|.+
T Consensus 202 ---~~-------------------------------~~~~~~~~~l~~~---~~-~~~~~~~~~~~~~~~~~~~~~~p~~ 243 (394)
T PRK10213 202 ---PS-------------------------------HQKQNTFRLLQRP---GV-MAGMIAIFMSFAGQFAFFTYIRPVY 243 (394)
T ss_pred ---cc-------------------------------cchhHHHHHhcCH---HH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000122233322 22 22222222222233334445 4777
Q ss_pred HHhcCCCCcHHHHHHHHHhHhhheec
Q 043735 310 FNTIGFGNDASLMSAVITGLVNACAT 335 (336)
Q Consensus 310 ~~~~G~s~~~~~~~~~~~~~~~~~~~ 335 (336)
.++.|++.++.+......+++++++.
T Consensus 244 ~~~~g~s~~~~g~~~~~~~~~~iig~ 269 (394)
T PRK10213 244 MNLAGFGVDGLTLVLLSFGIASFVGT 269 (394)
T ss_pred HHhcCCChhHHHHHHHHHHHHHHHHH
Confidence 77889999998888888777776653
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-24 Score=194.38 Aligned_cols=256 Identities=18% Similarity=0.304 Sum_probs=179.5
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhh
Q 043735 74 YCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQS 153 (336)
Q Consensus 74 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~ 153 (336)
++|++..+.+++.+...++..+++++.|+++||+|||+++..+.++..++.++..+.++++.+++.|++.|++.+...+.
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 125 (398)
T TIGR00895 46 EWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPN 125 (398)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhh
Confidence 34889999999999999999999999999999999999999999999999999998999999999999999999999999
Q ss_pred HHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHH-HHHhhcccCCChHHHHhc
Q 043735 154 VPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALI-ITIGSLVLPDTPNSMIER 232 (336)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~ 232 (336)
...++.|++|+++|+++.++...+..+|..+++.+.+.+.+. .+|++.+++.++..++ ..+..+++||++++...+
T Consensus 126 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (398)
T TIGR00895 126 LNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV---FGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK 202 (398)
T ss_pred HHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc---ccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc
Confidence 999999999999999999999999999999999999888763 5799888877544443 334446788887654433
Q ss_pred CChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHHHh
Q 043735 233 GQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFNT 312 (336)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (336)
+.++..+..++.......+.+. +..++.++.+..+...+..++....++ .+...+...+.....+....+.|.+.++
T Consensus 203 -~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (398)
T TIGR00895 203 -RPETVRRIVNAIAPQMQAEAQS-ALPEQKATQGTKRSVFKALFQGKTARI-TVLLWLLYFMLLVGVYFLTNWLPKLMVE 279 (398)
T ss_pred -CHHHHHHHHHHHHHhccccccc-cccccccccchhhHHHHHHhcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222211111000000 000000000011111222333322233 2233333334444566677888977888
Q ss_pred cCCCCcHHHHHHHHHhHhhheec
Q 043735 313 IGFGNDASLMSAVITGLVNACAT 335 (336)
Q Consensus 313 ~G~s~~~~~~~~~~~~~~~~~~~ 335 (336)
.|++..+++....+..++.+++.
T Consensus 280 ~g~~~~~~~~~~~~~~~~~~~~~ 302 (398)
T TIGR00895 280 LGFSLSLAATGGALFNFGGVIGS 302 (398)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888777766543
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.8e-24 Score=190.78 Aligned_cols=221 Identities=16% Similarity=0.164 Sum_probs=167.1
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhh
Q 043735 72 NQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFAN 151 (336)
Q Consensus 72 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~ 151 (336)
.+++|+|.++.+++.+.+.+++.+++++.|++.||+|||+++..+.++.+++++.+.++++++.+++.|++.|++.+...
T Consensus 36 ~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~ 115 (390)
T PRK03545 36 AQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFW 115 (390)
T ss_pred HhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 34459999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhh-cccCCChHHHH
Q 043735 152 QSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGS-LVLPDTPNSMI 230 (336)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~ 230 (336)
+....++.|++|+++|+++++++..+.++|..++|++++.+.+. .|||+.|++.+++.++..+.. .++||.++.
T Consensus 116 ~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~---~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~-- 190 (390)
T PRK03545 116 SITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQY---LGWRTTFLAIGGGALITLLLLIKLLPLLPSE-- 190 (390)
T ss_pred HHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH---hcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--
Confidence 99999999999999999999999999999999999999988763 579999998877766554433 345654310
Q ss_pred hcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHH
Q 043735 231 ERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLF 310 (336)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (336)
++ .+ ..+.++.++++..+. ...... +.....+....+.+.++
T Consensus 191 ---~~-----------------~~--------------~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~l 232 (390)
T PRK03545 191 ---HS-----------------GS--------------LKSLPLLFRRPALVS---LYLLTV-VVVTAHFTAYSYIEPFV 232 (390)
T ss_pred ---Cc-----------------ch--------------HHHHHHHHhCcHHHH---HHHHHH-HHHHHHHHHHHHHHHHH
Confidence 00 00 001223344332222 122211 22222233344555555
Q ss_pred H-hcCCCCcHHHHHHHHHhHhhheec
Q 043735 311 N-TIGFGNDASLMSAVITGLVNACAT 335 (336)
Q Consensus 311 ~-~~G~s~~~~~~~~~~~~~~~~~~~ 335 (336)
. +.|++..+++......++.+++++
T Consensus 233 ~~~~g~s~~~~~~~~~~~~~~~~~g~ 258 (390)
T PRK03545 233 QQVAGLSENFATLLLLLFGGAGIIGS 258 (390)
T ss_pred HHhcCCCccHHHHHHHHHHHHHHHHH
Confidence 4 579999999988888877776653
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-24 Score=196.25 Aligned_cols=242 Identities=14% Similarity=0.152 Sum_probs=178.6
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHhhhhhh
Q 043735 72 NQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFA--QGVWMLIVGRLLLGFGIGF 149 (336)
Q Consensus 72 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~--~~~~~~~~~r~l~g~~~~~ 149 (336)
+.+++++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+.
T Consensus 68 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~ 147 (465)
T TIGR00894 68 NPNFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGS 147 (465)
T ss_pred CCCCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhccc
Confidence 34789999999999999999999999999999999999999999999999998877543 4578899999999999999
Q ss_pred hhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhc-ccCCChHH
Q 043735 150 ANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSL-VLPDTPNS 228 (336)
Q Consensus 150 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~e~~~~ 228 (336)
..+....++.|++|+++|+++.++...+..+|..+++++.+.+.+.. .+||+.|++.+++.++..+.++ +.+|+|+.
T Consensus 148 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~--~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~ 225 (465)
T TIGR00894 148 VSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESW--GGWPMIFYVFGIVGCAWSLLWFVFPADDPSI 225 (465)
T ss_pred chhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCCeehhhhhHHHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999999999999999999999999887631 2799999988887766665554 45666632
Q ss_pred HHhcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHH
Q 043735 229 MIERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPV 308 (336)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (336)
. +...++.++..++ ..++++++.+.+.+++++++. +..+...+..++.....+.+..|+|.
T Consensus 226 ~--~~~~~~~~~~i~~-------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lp~ 286 (465)
T TIGR00894 226 H--PCISKFEKKYINS-------------SLQGQKGSTRQSLPIKAIPKS----LPVWAIWFAIFGHFWLYTILPTYLPT 286 (465)
T ss_pred C--CCCCHHHHHHHHh-------------hcccccCCCCCCCCHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 0011110000000 000000011112234444443 33455555556666667788889999
Q ss_pred HHH-hcCCCCcHHHHHHHHHhHhhhee
Q 043735 309 LFN-TIGFGNDASLMSAVITGLVNACA 334 (336)
Q Consensus 309 ~~~-~~G~s~~~~~~~~~~~~~~~~~~ 334 (336)
+++ .+|++..++++..++..++.+++
T Consensus 287 ~l~~~~g~s~~~~g~~~~~~~~~~~i~ 313 (465)
T TIGR00894 287 FISWVLRVSGKENGLLSSLPYLFAWLC 313 (465)
T ss_pred HHHHHhCcChHHhHHHHHHHHHHHHHH
Confidence 985 47999999988877766666544
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-24 Score=199.84 Aligned_cols=248 Identities=13% Similarity=0.044 Sum_probs=171.1
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHhhh
Q 043735 72 NQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGF-----AQGVWMLIVGRLLLGFG 146 (336)
Q Consensus 72 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~-----~~~~~~~~~~r~l~g~~ 146 (336)
.+++|+|.++.+++.+++.+++.+++++.|+++||+|||+++..+.+++++..+..+. +++++.+++.|++.|++
T Consensus 56 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 135 (467)
T PRK09556 56 ISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFF 135 (467)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 4445999999999999999999999999999999999999999888888877766554 57899999999999999
Q ss_pred hhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhh-cccCCC
Q 043735 147 IGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGS-LVLPDT 225 (336)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~ 225 (336)
.+...+....++.|++|+++||++++++..+.++|..+++++...+.+.....+|+..|.+.+++.++..+.. ++.+++
T Consensus 136 ~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~ 215 (467)
T PRK09556 136 QSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDS 215 (467)
T ss_pred HhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999888766553211258888877676665544443 455666
Q ss_pred hHHHHhcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhc-cccchhHHHHHHHHHHHHHhhchhHHHH
Q 043735 226 PNSMIERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLL-KRKYRPHLTMAILIPFFQQLTGINVIMF 304 (336)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (336)
|+..... +.+ +.. .+. .+.+ + +..++++.+..+.+ +...+++.++...+..++.....+....
T Consensus 216 p~~~~~~-~~~---~~~----~~~-~~~~--~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 279 (467)
T PRK09556 216 PEELGWG-KAE---EIF----GEP-ISEE--D-----KETESTDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDN 279 (467)
T ss_pred hhhcCCC-Chh---hcc----cCc-cchh--h-----hccccccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHH
Confidence 5321000 000 000 000 0000 0 00000011111211 1112223344444445555555667788
Q ss_pred cHHHHHH-hcCCCCcHHHHHHHHHhHhhheec
Q 043735 305 YAPVLFN-TIGFGNDASLMSAVITGLVNACAT 335 (336)
Q Consensus 305 ~~~~~~~-~~G~s~~~~~~~~~~~~~~~~~~~ 335 (336)
|.|.+++ ..|++..+++.......++.+++.
T Consensus 280 ~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~ 311 (467)
T PRK09556 280 WSPVYAFQELGFSKEDAINTFTLFEIGALVGS 311 (467)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Confidence 9998885 589999999888877777666543
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9e-23 Score=187.04 Aligned_cols=184 Identities=20% Similarity=0.323 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHhhhccccccccchhhHH-hhhccchhhhcccCCCCcccccCCCchhHHHH-----HHHHHHHHHHHHH
Q 043735 26 TCIVAAMGGLIFGYDIGISGGVTSMPSFL-KRFFPSVYRKQQANSSTNQYCQYNSETLTLFT-----SSLYLAALLSSLV 99 (336)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~-----~~~~~~~~i~~~~ 99 (336)
......++.+.++||...++.. .|.+. +++.| +.++. .+++. ++.+++..+++++
T Consensus 23 ~~~~~~~~~~~~~~d~~~~~~~--~~~~~~~~~~~----------------~~~~~-~~~~~~~~~~~~~~~~~~~g~~~ 83 (438)
T PRK09952 23 AALGSFAGAVVDWYDFLLYGIT--AALVFNREFFP----------------QVSPA-MGTLAAFATFGVGFLFRPLGGVV 83 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCC----------------CCCcH-HHHHHHHHHHHHHHHHHhhHHHH
Confidence 4445556778899999876543 23333 23322 23333 24332 4556778899999
Q ss_pred hHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHhhhhhhhhhhHHHHhhhcCCCccchhHH
Q 043735 100 ASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVW--------MLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALN 171 (336)
Q Consensus 100 ~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~--------~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~ 171 (336)
.|+++||+|||+++..+.++++++++++++++++. .++++|+++|++.|..++....++.|++|+++|++..
T Consensus 84 ~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~ 163 (438)
T PRK09952 84 FGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYS 163 (438)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHH
Confidence 99999999999999999999999999999999876 5888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc-----CCchhHHHHhhhHHHHHHHHHhhcccCCChHH
Q 043735 172 IGFQLSITIGILIANVLNYFFAKIK-----GGWGWRLSLGGAMVPALIITIGSLVLPDTPNS 228 (336)
Q Consensus 172 ~~~~~~~~~g~~~~~~l~~~~~~~~-----~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~ 228 (336)
+..+.+..+|..+++.+...+.... ..+|||+.|++.+++.++........||+|++
T Consensus 164 ~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~ 225 (438)
T PRK09952 164 SGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEF 225 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhH
Confidence 9999999999988877766654321 13689999998877765544444557787754
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-23 Score=187.97 Aligned_cols=238 Identities=20% Similarity=0.303 Sum_probs=194.8
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHhhhhhh
Q 043735 72 NQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQ--GVWMLIVGRLLLGFGIGF 149 (336)
Q Consensus 72 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~r~l~g~~~~~ 149 (336)
+.++++|.++.+++.+.++.|+.+++++.|+++||+|-|+++..+.++.++.+++...+. +++.+++.|+++|++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 567899999999999999999999999999999999999999999999999999888765 456789999999999999
Q ss_pred hhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhc-ccCCChHH
Q 043735 150 ANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSL-VLPDTPNS 228 (336)
Q Consensus 150 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~e~~~~ 228 (336)
.+|....+...|.|++||++..++...+..+|.+++-++++.+.+. ..||+..|++.+..+++..++++ +..|+|..
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s--~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~ 222 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES--SLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK 222 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc--CCCCchHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 9999999999999999999999999999999999999999999985 36899999999999888877764 56677742
Q ss_pred HHhcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhcc---ccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHc
Q 043735 229 MIERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASK---QVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFY 305 (336)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (336)
. + .-.++|.+.+++...+++ +.+.+|+++++++ .++...+..++...+++.+..|
T Consensus 223 h--~----------------~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~----~vwai~~~~f~~~~~~~~l~~y 280 (466)
T KOG2532|consen 223 H--P----------------NISEKELKYIEKGKSEAHVKKKPPVPYKAILTSP----PVWAIWISAFGGNWGFYLLLTY 280 (466)
T ss_pred C--C----------------CCCHHHHHHHHhcccccccCCCCCCCHHHHHcCH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 1 0 011112222222111111 1356788887765 5677777778888888999999
Q ss_pred HHHHHHh-cCCCCcHHHHHHHHHhHhhhe
Q 043735 306 APVLFNT-IGFGNDASLMSAVITGLVNAC 333 (336)
Q Consensus 306 ~~~~~~~-~G~s~~~~~~~~~~~~~~~~~ 333 (336)
.|.|+++ +|++..+.++..++..+...+
T Consensus 281 ~PtY~~~VL~f~v~~~G~~salP~l~~~~ 309 (466)
T KOG2532|consen 281 LPTYLKEVLGFDVRETGFLSALPFLAMAI 309 (466)
T ss_pred hhHHHHHHhCCChhhhhHHHHHHHHHHHH
Confidence 9999976 799999999988877766654
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-23 Score=192.27 Aligned_cols=181 Identities=14% Similarity=0.120 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccchhhHHhhhccchhhhcccCCCCcccccCCCchhHHHHHHHHHHHHHHHHHhHH
Q 043735 23 VTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQANSSTNQYCQYNSETLTLFTSSLYLAALLSSLVASS 102 (336)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~ 102 (336)
.+.....++++.+....|....+.. +|.+.+++ |.+.++.+|+.+.+.++..++.+++|+
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a--~p~i~~~l------------------~~s~~~~~~~~~~~~l~~~~~~~~~G~ 63 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVA--APTLSMTL------------------GASGNELLWIIDIYSLVMAGMVLPMGA 63 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh------------------CCCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666667777777766544 46665554 889999999999999999999999999
Q ss_pred hhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHHHHhhhcC-CCccchhHHHHHHHHHHHH
Q 043735 103 VTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMA-PYKYRGALNIGFQLSITIG 181 (336)
Q Consensus 103 l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g 181 (336)
++||+|||+++..+.++..+++++++++++++.++++|+++|++.+...+.....+.+.+ |+++|+++.+++.....+|
T Consensus 64 l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g 143 (495)
T PRK14995 64 LGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGG 143 (495)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998888887777765 6789999999999999999
Q ss_pred HHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhh-cccCCCh
Q 043735 182 ILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGS-LVLPDTP 226 (336)
Q Consensus 182 ~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~ 226 (336)
..++|.+++.+.+. .+|||.|++...+.++..+.. +++||++
T Consensus 144 ~~~gp~lgg~l~~~---~gwr~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 144 AAFGPLVGGILLEH---FYWGSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred HHHHHHHHHHhhcc---CChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999999884 579999998766655544433 5567765
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=183.01 Aligned_cols=221 Identities=15% Similarity=0.136 Sum_probs=167.9
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhh
Q 043735 72 NQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFAN 151 (336)
Q Consensus 72 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~ 151 (336)
++++|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+.++++++++.+++.|++.|++.+...
T Consensus 36 ~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~ 115 (393)
T PRK09705 36 RQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQ 115 (393)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHh
Confidence 34449999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhccc-CCChHHHH
Q 043735 152 QSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVL-PDTPNSMI 230 (336)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~ 230 (336)
+....++.+++| ++|+++++.+..+..+|..+++.+.+++.+.. .+||+.+...++..++..+..+.. ++.|+
T Consensus 116 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 189 (393)
T PRK09705 116 AVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHS--ETWYQTLAWWALPAVVALFAWWWQSAREVA--- 189 (393)
T ss_pred hhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHHhcCCCc---
Confidence 999999999997 77999999999999999999999988877642 269988766555544333322222 11110
Q ss_pred hcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHH
Q 043735 231 ERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLF 310 (336)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (336)
++ + ++ +.+..+.+++ ++. +...+...+....++....|.|.++
T Consensus 190 --~~----------------------------~--~~-~~~~~~~l~~---~~~-~~l~~~~~~~~~~~~~~~~~lp~~l 232 (393)
T PRK09705 190 --SS----------------------------H--KT-TTTPVRVVFT---PRA-WTLGVYFGLINGGYASLIAWLPAFY 232 (393)
T ss_pred --cc----------------------------c--CC-CcCCcccccC---HhH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 00 0011122222 222 2233333344445667788899999
Q ss_pred HhcCCCCcHHHHHHHHHhHhhheec
Q 043735 311 NTIGFGNDASLMSAVITGLVNACAT 335 (336)
Q Consensus 311 ~~~G~s~~~~~~~~~~~~~~~~~~~ 335 (336)
.+.|++..+++...++.++..++++
T Consensus 233 ~~~g~s~~~ag~~~~~~~i~~i~g~ 257 (393)
T PRK09705 233 IEIGASAQYSGSLLALMTLGQAAGA 257 (393)
T ss_pred HHcCCChhhhhHHHHHHHHHHHHHH
Confidence 8899999999999888888877664
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=184.58 Aligned_cols=224 Identities=13% Similarity=0.137 Sum_probs=167.8
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhh
Q 043735 72 NQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFAN 151 (336)
Q Consensus 72 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~ 151 (336)
.+++|.+.++.++..+++.+++.++++++|+++||+|||+++..+.++++++++++.++++++.++++|+++|++.+...
T Consensus 43 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~ 122 (413)
T PRK15403 43 VRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIA 122 (413)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 33448899999999999999999999999999999999999999999999999999999999999999999999988767
Q ss_pred hhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHh-hcccCCChHHHH
Q 043735 152 QSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIG-SLVLPDTPNSMI 230 (336)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~ 230 (336)
+....++.|++|+++|+++++++..+..+|..++|.+++.+.+. .|||+.|++.++..++..+. .+++||+++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~---~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~-- 197 (413)
T PRK15403 123 TVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF---VHWKVLFAIIAVMGLIAFVGLLLAMPETVKR-- 197 (413)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCCccc--
Confidence 77778899999999999999999999999999999999888763 57999999888776666554 3457876421
Q ss_pred hcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHH
Q 043735 231 ERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLF 310 (336)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (336)
+++. .+. ++ ....++++++++ .++...+...........+..+.|.++
T Consensus 198 -~~~~---------------~~~--~~----------~~~~~~~ll~~~----~~~~~~l~~~~~~~~~~~~~~~~P~~l 245 (413)
T PRK15403 198 -GAVP---------------FSA--KS----------VLRDFRNVFRNR----LFLTGAATLSLSYIPMMSWVAVSPVIL 245 (413)
T ss_pred -cCCC---------------CCh--HH----------HHHHHHHHHcCH----HHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence 0000 000 00 001223344333 233333333334444456666778887
Q ss_pred Hh-cCCCCcHHHHHHHHHhHhhh
Q 043735 311 NT-IGFGNDASLMSAVITGLVNA 332 (336)
Q Consensus 311 ~~-~G~s~~~~~~~~~~~~~~~~ 332 (336)
++ .|++..+.++.......+.+
T Consensus 246 ~~~~g~s~~~~gl~~~~~~~~~~ 268 (413)
T PRK15403 246 IDAGGMTTSQFAWTQVPVFGAVI 268 (413)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHH
Confidence 65 59999988887655444443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-22 Score=183.09 Aligned_cols=253 Identities=19% Similarity=0.317 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHhhhccccccccchhhHHhhhccchhhhcccCCCCcccccCCCchhHHH-HHHH-----HHHHHHHHHHh
Q 043735 27 CIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQANSSTNQYCQYNSETLTLF-TSSL-----YLAALLSSLVA 100 (336)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~~~~-----~~~~~i~~~~~ 100 (336)
...+.++.+.+.+|...++.. .|.+.+++ +.++.+.+.+ .+.. +++..+++++.
T Consensus 17 ~~~~~~~~~~~~~d~~~~~~~--~~~i~~~~------------------~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~ 76 (434)
T PRK15075 17 ILRVTSGNFLEMFDFFLFGFY--ATAIAKTF------------------FPAGNEFASLMLTFAVFGAGFLMRPLGAIVL 76 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHh------------------CCCCCchHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 445556778899998776643 35555544 6666665433 3322 23335789999
Q ss_pred HHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHhhhhhhhhhhHHHHhhhcCCCccchhHHH
Q 043735 101 SSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVW--------MLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNI 172 (336)
Q Consensus 101 g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~--------~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 172 (336)
|+++||+|||++++.+.+++++++++++++++++ .++++|+++|++.+...+....++.|++|+++|++.++
T Consensus 77 G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~ 156 (434)
T PRK15075 77 GAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTS 156 (434)
T ss_pred HHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHH
Confidence 9999999999999999999999999999998876 46889999999999999988999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc-----CCchhHHHHhhhHHHHHHHHHhhcccCCChHHHHhcCChHHHHHHHHHHcC
Q 043735 173 GFQLSITIGILIANVLNYFFAKIK-----GGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEAREKLRKIRG 247 (336)
Q Consensus 173 ~~~~~~~~g~~~~~~l~~~~~~~~-----~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 247 (336)
+...+.++|..+++.++..+.... ..+|||+.|++..+............||++++...
T Consensus 157 ~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~---------------- 220 (434)
T PRK15075 157 WQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLAR---------------- 220 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHh----------------
Confidence 999888888888877777654211 24689999987544322221111222332210000
Q ss_pred CCcchHHHHHHHHHHHhccccccchhhhccc-cchhHHHHHHHHHHHHHhhchhHHHHcHHHHHHh-cCCCCcHHHHHHH
Q 043735 248 VNDVDEEFNDLVAASEASKQVEHPWGNLLKR-KYRPHLTMAILIPFFQQLTGINVIMFYAPVLFNT-IGFGNDASLMSAV 325 (336)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~~~~~~~ 325 (336)
+.+ .+.++.++. ...++.+.......+.....++....|.|.++++ .|++..++++...
T Consensus 221 ---------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~ 281 (434)
T PRK15075 221 ---------------KHR----PSMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTL 281 (434)
T ss_pred ---------------hhc----cccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 000 001111111 1112222222333333444566788899999865 7999888887777
Q ss_pred HHhHhhhee
Q 043735 326 ITGLVNACA 334 (336)
Q Consensus 326 ~~~~~~~~~ 334 (336)
+.++.++++
T Consensus 282 ~~~~~~~~~ 290 (434)
T PRK15075 282 CVGVSNFIW 290 (434)
T ss_pred HHHHHHHHH
Confidence 666665543
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-22 Score=186.22 Aligned_cols=235 Identities=15% Similarity=0.106 Sum_probs=160.7
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhh
Q 043735 72 NQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFAN 151 (336)
Q Consensus 72 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~ 151 (336)
.+++|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++++++++++.+++.|++.|++.+...
T Consensus 63 ~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~ 142 (476)
T PLN00028 63 RDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFV 142 (476)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH
Confidence 33449999999999999999999999999999999999999999999999999999999999999999999999887643
Q ss_pred hhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhc----c--cCCchhHHHHhhhHHHHHHHHHhhcccC-C
Q 043735 152 QSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAK----I--KGGWGWRLSLGGAMVPALIITIGSLVLP-D 224 (336)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~----~--~~~~~w~~~~~~~~~~~~~~~~~~~~~~-e 224 (336)
....++.|++|+++|++++++.+...++|..+++.+.+.+.. . .+..|||+.|++.+++.++..+..++++ +
T Consensus 143 -~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~ 221 (476)
T PLN00028 143 -SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQD 221 (476)
T ss_pred -HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 455678999999999999999987777777777665554432 1 0124899999988887766655554444 3
Q ss_pred ChHHHHhcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHH
Q 043735 225 TPNSMIERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMF 304 (336)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (336)
.|+ ++.++. ++ +. ..++.+....+++.++.+ +.+ ...+.++...........
T Consensus 222 ~p~-----~~~~~~----~~---~~------------~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~ 273 (476)
T PLN00028 222 LPD-----GNYREL----KK---SG------------TMPKDSFSKVLRYGVTNY---RTW-ILALTYGYSFGVELTMDN 273 (476)
T ss_pred CCC-----CchhhH----Hh---cC------------ccccccHHHHHHHHHcCc---hhH-HHHHHHHHHHHHHHHHHh
Confidence 331 000000 00 00 000000001122223322 222 222223333333345566
Q ss_pred cHHHHHH-hcCCCCcHHHHHHHHHhHhhheec
Q 043735 305 YAPVLFN-TIGFGNDASLMSAVITGLVNACAT 335 (336)
Q Consensus 305 ~~~~~~~-~~G~s~~~~~~~~~~~~~~~~~~~ 335 (336)
+.|.++. +.|++..+++...++.++.+++++
T Consensus 274 ~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~ 305 (476)
T PLN00028 274 IIAEYFYDRFGLSLETAGAIAASFGLMNLFAR 305 (476)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 7787764 579999999988888887776654
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-23 Score=187.71 Aligned_cols=248 Identities=15% Similarity=0.194 Sum_probs=190.5
Q ss_pred CcccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhh
Q 043735 71 TNQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFA 150 (336)
Q Consensus 71 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~ 150 (336)
+.++.++...+.+.+.++++++++++.+++|.|.||++-.+.+....+++++..++....+|++.+++.|++.|+.++..
T Consensus 72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~ 151 (495)
T KOG2533|consen 72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGG 151 (495)
T ss_pred CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccc
Confidence 45677889999999999999999999999999999999999999999999888888888999999999999999999999
Q ss_pred hhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhccc---CCchhHHHHhhhHHHHHHHHHh-hcccCCCh
Q 043735 151 NQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIK---GGWGWRLSLGGAMVPALIITIG-SLVLPDTP 226 (336)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~---~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~ 226 (336)
+|....+++.|+.+++|+..++++.....+|+++|++++..+.+.. +..||||.|++.+++.+...+. .+++|+.|
T Consensus 152 wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P 231 (495)
T KOG2533|consen 152 WPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNP 231 (495)
T ss_pred chHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCCh
Confidence 9999999999999999999999999999999999999998864422 1368999999999887766654 46789988
Q ss_pred HHH--HhcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHH
Q 043735 227 NSM--IERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMF 304 (336)
Q Consensus 227 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (336)
... ..+++++-.. ++.++++....+++.++.+..+....++ ++.+.+..++.....+.+.+
T Consensus 232 ~~~~fl~~~ek~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~dp~-vw~~~l~~~~~~lv~~~~~~ 294 (495)
T KOG2533|consen 232 SKAWFLTDEEKELVV----------------ERLRESPSGGIENKFKWKGFKEALKDPG-VWPFSLCYFFLKLVNYGFSY 294 (495)
T ss_pred hhccccchHHHHHHH----------------HHHHhccCCCcccccCHHHHHHHHhchh-HHHHHHHHHHHhhccccHHH
Confidence 521 1111100000 0111111111111133334433333344 55566667777777888999
Q ss_pred cHHHHHHh-cCCCCcHHHHHHHHHhHhhheec
Q 043735 305 YAPVLFNT-IGFGNDASLMSAVITGLVNACAT 335 (336)
Q Consensus 305 ~~~~~~~~-~G~s~~~~~~~~~~~~~~~~~~~ 335 (336)
|+|.++++ .|++..++..+.+...++++++.
T Consensus 295 ~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~ 326 (495)
T KOG2533|consen 295 WLPLYLKSNGGYSELQANLLSTPYDVGGIVGL 326 (495)
T ss_pred HHHHHHHcCCCcChHHhccccchHHhhhHHHH
Confidence 99999988 67999999988888888877654
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.4e-22 Score=178.73 Aligned_cols=249 Identities=12% Similarity=0.107 Sum_probs=179.0
Q ss_pred HHHHHHHHHHHhhhccccccccchhhHHhhhccchhhhcccCCCCcccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhh
Q 043735 27 CIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQANSSTNQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRK 106 (336)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr 106 (336)
...+.++.+..+++....+.. +|.+.++ +|+|.++.+++.+...+++.+++++.|++.||
T Consensus 9 ~~~~~~~~~~~~~~~~~~g~~--~~~i~~~------------------~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr 68 (394)
T PRK03699 9 TWISFLSYALTGALVIVTGMV--MGPIAEY------------------FNLPVSSMSNTFTFLNAGILISIFLNAWLMEI 68 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhh--hHHHHHH------------------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556676665444332 3444444 48999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHH
Q 043735 107 FGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIAN 186 (336)
Q Consensus 107 ~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 186 (336)
+|||+++..+.++.+++.+++.++++++.+++.|++.|++.+...+....++.|++|+++|+.+.+..+....+|+.++|
T Consensus 69 ~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 148 (394)
T PRK03699 69 IPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFP 148 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988888899999999999999999998888899999999
Q ss_pred HHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCCChHHHHhcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhcc
Q 043735 187 VLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASK 266 (336)
Q Consensus 187 ~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (336)
.+.+.+... ..+||+.|.+.+++.++..+..++ .+.|+. ++++. + ++++
T Consensus 149 ~~~~~l~~~--~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~--~~~~~------------~--------------~~~~ 197 (394)
T PRK03699 149 IIAAYLLAR--SIEWYWVYACIGLVYVAIFILTLF-SEFPAL--GKHAP------------K--------------ADKP 197 (394)
T ss_pred HHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHHh-cCCccc--cccCc------------c--------------ccCc
Confidence 888776542 257999998777765554443332 222210 00000 0 0000
Q ss_pred ccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHHH-hcCCCCcHHHHHHHHHhHhhheec
Q 043735 267 QVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFN-TIGFGNDASLMSAVITGLVNACAT 335 (336)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~s~~~~~~~~~~~~~~~~~~~ 335 (336)
. .+....++ .+...+..++.....+.+..|.|.+++ +.|++..+++...+...+...+++
T Consensus 198 ~--------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~ 258 (394)
T PRK03699 198 V--------AKEKWGIG-VLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGM 258 (394)
T ss_pred c--------ccccCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHH
Confidence 0 01111122 333333344444455677889999985 579999999888877766665543
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.1e-23 Score=184.74 Aligned_cols=245 Identities=15% Similarity=0.136 Sum_probs=176.3
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhh
Q 043735 72 NQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFAN 151 (336)
Q Consensus 72 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~ 151 (336)
.+++|+|..+.+++.++..++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|++.+...
T Consensus 21 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 100 (399)
T TIGR00893 21 QEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFF 100 (399)
T ss_pred HHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhh
Confidence 34448999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhh-cccCCChHHHH
Q 043735 152 QSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGS-LVLPDTPNSMI 230 (336)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~ 230 (336)
+....++.|++|+++|++..++.+....+|..+++.+.+.+.+. .+||+.+++.+++.++..+.. ++.||+|+...
T Consensus 101 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (399)
T TIGR00893 101 PGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIH---FSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAK 177 (399)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh---CCchHHHHHHHHHHHHHHHHhhheecCCCCccc
Confidence 99999999999999999999999999999999999999987763 579999988777766555444 45566543110
Q ss_pred hcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHH
Q 043735 231 ERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLF 310 (336)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (336)
...++.++...+ ....+ .++.++++.++.+.++.+++ ++ .+...+..+...........+.|.++
T Consensus 178 --~~~~~~~~~~~~---~~~~~------~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (399)
T TIGR00893 178 --WLTEEEKYIVVG---GLLAE------QQGKGPSTPKKYQIKELLKD---RR-VWGLALGQFLVNIGLGFFLTWFPTYL 242 (399)
T ss_pred --cCCHHHHhhcch---hhccc------cccccccCCCccchHHHhcC---HH-HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 001111000000 00000 00001111112223333332 23 33344444555555667778888887
Q ss_pred H-hcCCCCcHHHHHHHHHhHhhhee
Q 043735 311 N-TIGFGNDASLMSAVITGLVNACA 334 (336)
Q Consensus 311 ~-~~G~s~~~~~~~~~~~~~~~~~~ 334 (336)
. ..|++..+++....+..+.++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (399)
T TIGR00893 243 VQERGLSILEAGFMASLPGIVGFIG 267 (399)
T ss_pred HHHhcccHHHhhHHHHHHHHHHHHH
Confidence 5 57999888888877777766554
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-21 Score=181.07 Aligned_cols=183 Identities=22% Similarity=0.364 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccchhhHHhhhccchhhhcccCCCCcccccCCCchhHHHHHHHHHHHHHHHHHhHH
Q 043735 23 VTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQANSSTNQYCQYNSETLTLFTSSLYLAALLSSLVASS 102 (336)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~ 102 (336)
.+.....+.++.+.++++....+. .+|.+.++ +|+|..+.+++.+...++..+++++.|+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~------------------~~~s~~~~~~~~~~~~~~~~~~~~~~g~ 77 (496)
T PRK03893 18 QWKAFSAAWLGYLLDGFDFVLITL--VLTEVQGE------------------FGLTTVQAASLISAAFISRWFGGLLLGA 77 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH------------------hCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555666666654432 23444333 4899999999999999999999999999
Q ss_pred hhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHH
Q 043735 103 VTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGI 182 (336)
Q Consensus 103 l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 182 (336)
++||+|||+++..+.++.+++.+++.+.++++.+++.|++.|++.+..++....++.|++|+++|+++.+....+..+|.
T Consensus 78 l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 157 (496)
T PRK03893 78 MGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGA 157 (496)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCCChHH
Q 043735 183 LIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNS 228 (336)
Q Consensus 183 ~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~ 228 (336)
.+++.+.+.+.+ .++||+.|++..+..++..+....+||++++
T Consensus 158 ~~~~~~~~~l~~---~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~ 200 (496)
T PRK03893 158 VVAAQVYSLVVP---VWGWRALFFIGILPIIFALWLRKNLPEAEDW 200 (496)
T ss_pred HHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHHhCCCchhh
Confidence 999999998877 4679999887555444443344456776543
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.2e-22 Score=177.70 Aligned_cols=150 Identities=18% Similarity=0.232 Sum_probs=133.7
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhh
Q 043735 74 YCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQS 153 (336)
Q Consensus 74 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~ 153 (336)
++|+|.++.+++.+...++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|++.+...+.
T Consensus 32 ~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~ 111 (382)
T PRK10091 32 DVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGV 111 (382)
T ss_pred HcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHH
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHh-hcccCCCh
Q 043735 154 VPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIG-SLVLPDTP 226 (336)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~ 226 (336)
...++.|++|+++|+++.+.+..+..+|..+++++++.+.+ ..+||+.|++.++..++..+. .+++||.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~---~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 112 GAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ---EFSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred HHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh---hccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 88899999999999999999999999999999999988876 357999999877765554443 34567653
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-22 Score=187.88 Aligned_cols=170 Identities=24% Similarity=0.330 Sum_probs=154.2
Q ss_pred ccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhh
Q 043735 73 QYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQ 152 (336)
Q Consensus 73 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~ 152 (336)
+.++.+.....+..+++++|..+|++++|+++||+|||++++++.++..++.++.++++|++.+++.|++.|++.++...
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~ 190 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT 190 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence 34466788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCCChHHHHhc
Q 043735 153 SVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIER 232 (336)
Q Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 232 (336)
....++.|++++++|+.+..+ ......++.+++...+++.+ +||+.+++..++..+.++..++.||+|+|+..+
T Consensus 191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-----~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~ 264 (521)
T KOG0255|consen 191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-----DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSK 264 (521)
T ss_pred HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHc
Confidence 999999999999999999999 77777788888888888876 699999999999887777766777999999999
Q ss_pred CChHHHHHHHHHHcCC
Q 043735 233 GQRDEAREKLRKIRGV 248 (336)
Q Consensus 233 ~~~~~~~~~~~~~~~~ 248 (336)
++.+++.+.+++..+.
T Consensus 265 g~~~~a~~~l~~~a~~ 280 (521)
T KOG0255|consen 265 GRIDEAIKILKKIAKL 280 (521)
T ss_pred CchHHHHHHHHHHHhh
Confidence 9999998888877543
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-24 Score=186.78 Aligned_cols=155 Identities=17% Similarity=0.347 Sum_probs=142.7
Q ss_pred CCcccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhh
Q 043735 70 STNQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGF 149 (336)
Q Consensus 70 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~ 149 (336)
++++++|++++..|++++.+.+.+.+++++.|+++||++||+++..|..+|.++.+.++++..+|++.++|.+.|+|.+.
T Consensus 58 ~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs 137 (493)
T KOG1330|consen 58 EVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEAS 137 (493)
T ss_pred HHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 34667799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhh-cccCCCh
Q 043735 150 ANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGS-LVLPDTP 226 (336)
Q Consensus 150 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~ 226 (336)
+.+.++++++|.+|..+|++++++++.+..+|..+|.+++..+.+..+ .|||.|+..+++++++.++. ++.+|++
T Consensus 138 ~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~--~Wr~af~~~avl~vi~~~L~~~f~~eP~ 213 (493)
T KOG1330|consen 138 YSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF--WWRWAFRGSAVLGVIVGLLVFLFVREPE 213 (493)
T ss_pred hcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc--ceEEEEEeehHHHHHHHHHHHhhccCcc
Confidence 999999999999999999999999999999999999999988887654 39999999999987776665 4666654
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=176.30 Aligned_cols=222 Identities=13% Similarity=0.152 Sum_probs=167.5
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhH
Q 043735 75 CQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSV 154 (336)
Q Consensus 75 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~ 154 (336)
+|.|+++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+.+.+.++++.+++.|++.|++.+...+..
T Consensus 35 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 114 (385)
T TIGR00710 35 LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVIS 114 (385)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhh-cccCCChHHHHhcC
Q 043735 155 PLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGS-LVLPDTPNSMIERG 233 (336)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~ 233 (336)
..++.|++|+++|+++.+..+....+|..+++.+++.+.+. .+||+.+++.++..++..+.. ++.||+++..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 187 (385)
T TIGR00710 115 QALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW---LSWHAIFAFLSLAGILLSALIFFILPETLPYE---- 187 (385)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc----
Confidence 99999999999999999999999999999999999988763 579999987776655544443 4566654210
Q ss_pred ChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHHH-h
Q 043735 234 QRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFN-T 312 (336)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 312 (336)
++ +..++ ...+.++.++++..+. ..+.........+....+.|.+++ +
T Consensus 188 ~~--------------~~~~~-------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (385)
T TIGR00710 188 AR--------------IQIST-------------YFETFLLLLKSKMFWG----YALIYGASFGGFFAFFSGAPFVYIDI 236 (385)
T ss_pred cc--------------CCHHH-------------HHHHHHHHHcCchhHH----HHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 00 00000 0011223333332222 222222223334455667777775 6
Q ss_pred cCCCCcHHHHHHHHHhHhhhee
Q 043735 313 IGFGNDASLMSAVITGLVNACA 334 (336)
Q Consensus 313 ~G~s~~~~~~~~~~~~~~~~~~ 334 (336)
.|+++.+.+.......+..+++
T Consensus 237 ~g~~~~~~g~~~~~~~~~~~~~ 258 (385)
T TIGR00710 237 MGVSPSVFGLLFALNIIAMIFG 258 (385)
T ss_pred cCCCHHHHHHHHHHHHHHHHHH
Confidence 8999999988887777766654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-23 Score=184.69 Aligned_cols=242 Identities=18% Similarity=0.186 Sum_probs=170.7
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhH
Q 043735 75 CQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSV 154 (336)
Q Consensus 75 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~ 154 (336)
+|+|..+.+++.++..++..+++++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|++.|++.+...+..
T Consensus 25 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 104 (379)
T TIGR00881 25 IGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPC 104 (379)
T ss_pred hCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCch
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCccchhHHHHHHHHHHHHHHHHH-HHHHHhhcccCCchhHHHHhhhHHHHHHHH-HhhcccCCChHHHHhc
Q 043735 155 PLYLSEMAPYKYRGALNIGFQLSITIGILIAN-VLNYFFAKIKGGWGWRLSLGGAMVPALIIT-IGSLVLPDTPNSMIER 232 (336)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~-~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~ 232 (336)
..++.|++|+++|+++.++.+.+..+|..+++ .+...+.+ ..+||+.+++.+++.++.. +..++.||+|+....+
T Consensus 105 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (379)
T TIGR00881 105 GRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE---LYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLP 181 (379)
T ss_pred HHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHh---cCCchhHHHHHHHHHHHHHHHHheeeCCCccccccC
Confidence 99999999999999999999999999999999 45555544 3579999887776655443 3445667765321100
Q ss_pred CChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHHH-
Q 043735 233 GQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFN- 311 (336)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 311 (336)
+++++ .. ++.+++ + ++++++.+..+...++.++++ ..+...+..+...........+.|.++.
T Consensus 182 ~~~~~--------~~-~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (379)
T TIGR00881 182 PAEEM--------PN-EEPDGD--A-EKKEEELTKKQIFLQYVLLNK----VLWYISLGYVFVYVVRTGILDWSPLYLTQ 245 (379)
T ss_pred ccccC--------cc-cccccc--c-ccccccccchHHHHHHHHhcc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 00 000000 0 000000011111223333333 2333333333334344566778888875
Q ss_pred hcCCCCcHHHHHHHHHhHhhheec
Q 043735 312 TIGFGNDASLMSAVITGLVNACAT 335 (336)
Q Consensus 312 ~~G~s~~~~~~~~~~~~~~~~~~~ 335 (336)
..|++..+++...++..+..++++
T Consensus 246 ~~g~~~~~~~~~~~~~~~~~~~~~ 269 (379)
T TIGR00881 246 EKGFSKEKASWAFTLYELGGLVGT 269 (379)
T ss_pred HhCCCHHHHHHHHHHHHHHcchhH
Confidence 579999999988888887776654
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-23 Score=178.76 Aligned_cols=287 Identities=22% Similarity=0.231 Sum_probs=198.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhhccccccccchhhHHhhhccchhhhcccCCCCcccccCCCchhHHHHHHHHHHHHHH
Q 043735 17 GKLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQANSSTNQYCQYNSETLTLFTSSLYLAALLS 96 (336)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~ 96 (336)
...+|+.....+++.++.|.|+||...++.+. |.+..-|.... +..=++++...+.+..+.++|.++|
T Consensus 33 ~g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt--~il~~lY~~~~----------~~~g~~ps~i~~~Vn~~A~vGti~G 100 (538)
T KOG0252|consen 33 EGLQWKHFKAIIIAGMGFFTDSYDLFSISLVT--KILGYLYYHGD----------ESGGHYPSGVLALVNAAALVGTIFG 100 (538)
T ss_pred cchhHHHHHHHHHhhhhhcccchhhhhHHHHH--HHHHHHhcCCC----------CCCCcCCchHHHHHHHHHHHHHHHH
Confidence 34578999999999999999999999887553 55544442111 1111466777899999999999999
Q ss_pred HHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHhhhhhhhhhhHHHHhhhcCCCccchh
Q 043735 97 SLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQ-------GVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGA 169 (336)
Q Consensus 97 ~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~-------~~~~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~~r~~ 169 (336)
++++|++.||+|||+++...+++..+++++++++. -.+++...|++.|+|.|+-+|...+..+|...++.||.
T Consensus 101 Ql~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa 180 (538)
T KOG0252|consen 101 QLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGA 180 (538)
T ss_pred HHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccc
Confidence 99999999999999999999999999999877643 14678899999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh----cccC--------CchhHHHHhhhHHHHHHHHHhhcccCCChHHHHhcC-ChH
Q 043735 170 LNIGFQLSITIGILIANVLNYFFA----KIKG--------GWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERG-QRD 236 (336)
Q Consensus 170 ~~~~~~~~~~~g~~~~~~l~~~~~----~~~~--------~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~~ 236 (336)
..+.......+|.+.|.+++..+. +..+ +.-||..+.+.++++++.....+.+||++++..... +.+
T Consensus 181 ~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~ 260 (538)
T KOG0252|consen 181 FIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLK 260 (538)
T ss_pred eeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHh
Confidence 887666666666555555444433 2221 124999999999999888888889999998863332 222
Q ss_pred HHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchh----hhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHHHh
Q 043735 237 EAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWG----NLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFNT 312 (336)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (336)
.+.+..++.... +.++.+.. +...+.+..+. ..+..+.- +..+..+..++..-..+|..+.+...+++.
T Consensus 261 ~a~~d~~k~~~~-----~~~~~~~~-~~~~~~~~~~~~~F~~~f~~~hg-~~Llgt~~~WFllDiafy~~nL~~s~I~~~ 333 (538)
T KOG0252|consen 261 QAAGDMKKVLSV-----DIEAESTA-ESDVPPPSNSFGLFSRLFLRWHG-KHLLGTAGTWFLLDIAFYGQNLFQSVIFSA 333 (538)
T ss_pred hhhhcccccccc-----ccchhhcc-ccCCCCcccccchHHHHHHHHHH-HHHHHHHHHHHhhhhhhhccccHHHHHHHh
Confidence 222222111111 01110111 11111122222 22222222 335555566666666788999999999999
Q ss_pred cCCCCcHHHH
Q 043735 313 IGFGNDASLM 322 (336)
Q Consensus 313 ~G~s~~~~~~ 322 (336)
.|+.+.+..+
T Consensus 334 ig~~~~~~~~ 343 (538)
T KOG0252|consen 334 IGVIPSANTY 343 (538)
T ss_pred hccCCCcchH
Confidence 9987665544
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-22 Score=183.62 Aligned_cols=239 Identities=16% Similarity=0.117 Sum_probs=162.0
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHhhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQ----GVWMLIVGRLLLGFGIGFAN 151 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~----~~~~~~~~r~l~g~~~~~~~ 151 (336)
|+|.++.++..+...++..+++++.|+++||+|||++++.+.++.+++.+.+++.+ +++.+++.|++.|++.+..+
T Consensus 59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~ 138 (452)
T PRK11273 59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGW 138 (452)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccc
Confidence 88999999999999999999999999999999999999999999999998887653 67788999999999999888
Q ss_pred hhHHHHhhhcCCCccchhHHHHHHHHHHHHHHH-HHHHHHHhhcccCCchhHHHHhhhHHHHHHHH-HhhcccCCChHHH
Q 043735 152 QSVPLYLSEMAPYKYRGALNIGFQLSITIGILI-ANVLNYFFAKIKGGWGWRLSLGGAMVPALIIT-IGSLVLPDTPNSM 229 (336)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~e~~~~~ 229 (336)
+.....+.|++|+++|++++++++.+.++|+.+ +|++...+.. ..+||+.|++.+++.++.. +..+++||+|+..
T Consensus 139 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~---~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~ 215 (452)
T PRK11273 139 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW---FNDWHAALYMPAFAAILVALFAFAMMRDTPQSC 215 (452)
T ss_pred hHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHHccCCHhhc
Confidence 888888999999999999999999999998754 4443333322 1379999988777655543 4446678877431
Q ss_pred HhcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhcc-ccchhHHHHHHHHHHHHHhhchhHHHHcHHH
Q 043735 230 IERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLK-RKYRPHLTMAILIPFFQQLTGINVIMFYAPV 308 (336)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (336)
..++ .++.++ + . ++ +.+.+++++.+.++.++ ...+++.++...+..++.....+....|.|.
T Consensus 216 ~~~~-~~~~~~---~-~--~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~ 278 (452)
T PRK11273 216 GLPP-IEEYKN---D-Y--PD----------DYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPT 278 (452)
T ss_pred CCCC-hhhhhh---c-c--cc----------ccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1000 000000 0 0 00 00000001111222211 1111223333434444444445667789999
Q ss_pred HHHh-cCCCCcHHHHHHHHHhHhhhee
Q 043735 309 LFNT-IGFGNDASLMSAVITGLVNACA 334 (336)
Q Consensus 309 ~~~~-~G~s~~~~~~~~~~~~~~~~~~ 334 (336)
++++ .|++..+++....+..+..+++
T Consensus 279 ~l~~~~g~s~~~~~~~~~~~~~~~~~g 305 (452)
T PRK11273 279 YLKEVKHFALDKSSWAYFLYEYAGIPG 305 (452)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 9976 6999888887776666655543
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-22 Score=181.22 Aligned_cols=232 Identities=24% Similarity=0.430 Sum_probs=166.4
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhh
Q 043735 72 NQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFAN 151 (336)
Q Consensus 72 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~ 151 (336)
.+++|.|..+.+++.++..++..+++++.|+++||+|||+++..+.++.+++.++..++++.+.+++.|++.|++.+...
T Consensus 24 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 103 (352)
T PF07690_consen 24 AEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFS 103 (352)
T ss_dssp HCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhcccccccccccc
Confidence 44558999999999999999999999999999999999999999999999997666666777799999999999999999
Q ss_pred hhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHh-hcccCCChHHHH
Q 043735 152 QSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIG-SLVLPDTPNSMI 230 (336)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~ 230 (336)
+....++.|++|+++|+++.+..+....+|..++|.+++.+.+ ..+||+.+++.++..++..++ .++++++++...
T Consensus 104 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~---~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~ 180 (352)
T PF07690_consen 104 PASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLIS---YFGWRWAFLISAILSLIAAILFILFLPEPPPPRE 180 (352)
T ss_dssp HHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC---HCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT
T ss_pred ccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhh---ccccccccccccchhhhhhhhHhhhhhhcccccc
Confidence 9999999999999999999999999999999999999999886 357999999888887766654 244544432110
Q ss_pred hcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhcccccc-chhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHH
Q 043735 231 ERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEH-PWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVL 309 (336)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (336)
.+++.+ ++ ++.++... .++.+.+++..+ ..................+.|.+
T Consensus 181 ~~~~~~----------------~~--------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 232 (352)
T PF07690_consen 181 RESPKE----------------SE--------SKKPKPLKPGFKSLFKNPVLW----ILLIAFFLFFFVFSGFSFFLPLY 232 (352)
T ss_dssp --SSTT----------------TT----------HHHCCCH-CTHHHHHHCCH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccc----------------cc--------cccccccccccccccccchhh----hhhhhhhHHHHHHHHhhcccchh
Confidence 000000 00 00000011 133333333222 22222233333445577888887
Q ss_pred -HHhcCCC-CcHHHHHHHHHhHhhhee
Q 043735 310 -FNTIGFG-NDASLMSAVITGLVNACA 334 (336)
Q Consensus 310 -~~~~G~s-~~~~~~~~~~~~~~~~~~ 334 (336)
.+..|++ ..+.+....+.++.++++
T Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (352)
T PF07690_consen 233 LQEVLGFSGPSQAGLLFSIFGIVGIIG 259 (352)
T ss_dssp CCHHHHCCTHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 4678998 677777777776666543
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=181.69 Aligned_cols=150 Identities=19% Similarity=0.301 Sum_probs=134.9
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhh
Q 043735 74 YCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQS 153 (336)
Q Consensus 74 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~ 153 (336)
++|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++..++.++++++++++.+++.|+++|++.+...+.
T Consensus 31 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~ 110 (485)
T TIGR00711 31 DLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPL 110 (485)
T ss_pred hcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHH
Confidence 33889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhh-cccCCCh
Q 043735 154 VPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGS-LVLPDTP 226 (336)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~ 226 (336)
...++.|++|+++|+++.+++.....+|..++|.+++.+.+ .++||+.|++.+.+.++..+.. ++.||++
T Consensus 111 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~---~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 181 (485)
T TIGR00711 111 SFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE---NYHWRWIFLINVPIGIIVVVVAFFILPRDK 181 (485)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc---CcCceehhhhhhHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999998877 4679999988777665554443 4566643
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-21 Score=175.40 Aligned_cols=149 Identities=15% Similarity=0.168 Sum_probs=131.2
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhH
Q 043735 75 CQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSV 154 (336)
Q Consensus 75 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~ 154 (336)
+|.|..+.++..+.+.+++.+++++.|+++||+|||+++..+.++..++.+.+.++++++.+++.|++.|++.+...+..
T Consensus 43 ~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~ 122 (406)
T PRK15402 43 FNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVG 122 (406)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHH
Confidence 38899999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhh-cccCCCh
Q 043735 155 PLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGS-LVLPDTP 226 (336)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~ 226 (336)
..++.|++|+++|++..+.......++..++|.+++.+.+. .+||+.+++.++..++..+.. +..||++
T Consensus 123 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~---~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 123 YAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHV---LPWRGMFVLFAALAALSFFGLWRAMPETA 192 (406)
T ss_pred HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cCccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999988888888999999999888773 479999988777766555433 4567654
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.8e-22 Score=176.28 Aligned_cols=225 Identities=14% Similarity=0.113 Sum_probs=163.6
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQ-----GVWMLIVGRLLLGFGIGFA 150 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~r~l~g~~~~~~ 150 (336)
+.+..+.+++.++..++..+++++.|+++||+|||+++..+.++..++.++..+.+ +++.+++.|++.|++.+..
T Consensus 30 ~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 109 (365)
T TIGR00900 30 TGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFF 109 (365)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999999999999999999999999999999988888887777 8999999999999999999
Q ss_pred hhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhccc--CCChHH
Q 043735 151 NQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVL--PDTPNS 228 (336)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~e~~~~ 228 (336)
.+...+++.|++|+++|++..+..+.+..+|..++|.+++.+.+. .+||+.+++.++..++..+..+.+ ||.++.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (365)
T TIGR00900 110 TPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT---LGIKWAIWVDAVGFAISALLIVSVRIPELAAS 186 (365)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHhcccccCCCc
Confidence 999999999999999999999999999999999999999998773 579999987776655554444333 222110
Q ss_pred HHhcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHH-HcHH
Q 043735 229 MIERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIM-FYAP 307 (336)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 307 (336)
+++ + ..++..++ ..+.+++.++++..+. .... .+.......... .+.|
T Consensus 187 ----~~~-~------------~~~~~~~~----------~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~ 235 (365)
T TIGR00900 187 ----EIQ-A------------LSNAVLRD----------TREGIKFVLKNPLLRT---LLLL-ALLFNLVFAPAIVALFP 235 (365)
T ss_pred ----ccc-c------------cchhHHHH----------HHhHHHHHHcCcHHHH---HHHH-HHHHHHHHHHHHHHHhH
Confidence 000 0 00000000 0112333444332222 2222 222222222333 6778
Q ss_pred HHHHh-cCCCCcHHHHHHHHHhHhhhee
Q 043735 308 VLFNT-IGFGNDASLMSAVITGLVNACA 334 (336)
Q Consensus 308 ~~~~~-~G~s~~~~~~~~~~~~~~~~~~ 334 (336)
.+.++ .|++..+.+......+++.+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (365)
T TIGR00900 236 YVQSKYLGRGSTHYGWVLAAFGLGALLG 263 (365)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence 88765 7999999998888877776654
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-21 Score=173.50 Aligned_cols=151 Identities=17% Similarity=0.178 Sum_probs=129.4
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhh
Q 043735 72 NQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFAN 151 (336)
Q Consensus 72 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~ 151 (336)
.+++|+|.++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|++.+..+
T Consensus 30 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 109 (377)
T TIGR00890 30 GRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAY 109 (377)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33449999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhh-cccCCCh
Q 043735 152 QSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGS-LVLPDTP 226 (336)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~ 226 (336)
+.....+.|++| ++|+++.+....+..+|..+++++...+.+ ..+||+.+++.+++.++..+.. +++++++
T Consensus 110 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 181 (377)
T TIGR00890 110 GIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVIN---LEGVPAAFIYMGIIFLLVIVLGAFLIGYPP 181 (377)
T ss_pred HhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHh---cccHHHHHHHHHHHHHHHHHHHHHheecCc
Confidence 888888899987 579999999999999998877666666554 3579999998887766655444 4455443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-22 Score=189.16 Aligned_cols=250 Identities=15% Similarity=0.161 Sum_probs=175.3
Q ss_pred CCCcccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhh-----------------
Q 043735 69 SSTNQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQ----------------- 131 (336)
Q Consensus 69 ~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~----------------- 131 (336)
++++++|+++.++.|++.+.+.++++++.++.|++.||+|||+++.++.++++++++++++.+
T Consensus 57 ~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~ 136 (633)
T TIGR00805 57 TTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGN 136 (633)
T ss_pred hhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccc
Confidence 445666799999999999999999999999999999999999999999999999998887653
Q ss_pred ----------------------------------hHHHHHHHHHHHhhhhhhhhhhHHHHhhhcCCCccchhHHHHHHHH
Q 043735 132 ----------------------------------GVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLS 177 (336)
Q Consensus 132 ----------------------------------~~~~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 177 (336)
.+..++++|+++|+|.+..++...+++.|++|+++|++..++++.+
T Consensus 137 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~ 216 (633)
T TIGR00805 137 LSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESI 216 (633)
T ss_pred ccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHH
Confidence 2456789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCc-------------------hhHHHHhhhHHHHHHHHHhhcccCCChHHHHhcCChHHH
Q 043735 178 ITIGILIANVLNYFFAKIKGGW-------------------GWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEA 238 (336)
Q Consensus 178 ~~~g~~~~~~l~~~~~~~~~~~-------------------~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 238 (336)
..+|..+++++++++.+...++ +|+..|++.+++.++..+..+++|++.+....+.+.+..
T Consensus 217 ~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~~~~~ 296 (633)
T TIGR00805 217 AVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPKEGKRVNVDVH 296 (633)
T ss_pred HHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCcccccchhhh
Confidence 9999999999999887643111 377778877777766666556666542110000000000
Q ss_pred HHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHHH-hcCCCC
Q 043735 239 REKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFN-TIGFGN 317 (336)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~s~ 317 (336)
++ +.. .+.+.+.. .+ .....++.....++++++ +.++...+..++....++.+..|+|.+++ ++|++.
T Consensus 297 ~~--~~~-~~~~~~~~-~~---~~~~~~~~~~~~~~Ll~n----~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~ 365 (633)
T TIGR00805 297 ET--EKL-EKSEDKSR-KK---NSDITKDFPKIIKRLLCN----PIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISS 365 (633)
T ss_pred hh--hcc-cccccccc-hh---hhhhHHHHHHHHHHHHcC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 00 000 00000000 00 000000011123334433 34555555666666677888899999996 589999
Q ss_pred cHHHHHHHHHhH
Q 043735 318 DASLMSAVITGL 329 (336)
Q Consensus 318 ~~~~~~~~~~~~ 329 (336)
.+++++.....+
T Consensus 366 ~~ag~l~~~~~i 377 (633)
T TIGR00805 366 AEANFLIGVVNL 377 (633)
T ss_pred HHHHHHhhhhhh
Confidence 999888766554
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=171.59 Aligned_cols=220 Identities=17% Similarity=0.209 Sum_probs=163.6
Q ss_pred ccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhh
Q 043735 73 QYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQ 152 (336)
Q Consensus 73 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~ 152 (336)
+++|.++++.+++.+++.++..++++++|+++||+|||+++..+.++..++.+.+.+.++++.+++.|++.|++.+...+
T Consensus 34 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~ 113 (401)
T PRK11043 34 ADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAV 113 (401)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHH
Confidence 34489999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred hHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCCChHHHHhc
Q 043735 153 SVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIER 232 (336)
Q Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 232 (336)
....++.|++|+++|++..+.......++..++|.+++.+.+. .+||+.+++.++..++..+..++++|+++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 186 (401)
T PRK11043 114 IWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNH---FGWQAIFATLFAITLLLILPTLRLKPSKKA---- 186 (401)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHcCCCCCc----
Confidence 8888999999999999999988888899999999999988773 579999988777766665555555554310
Q ss_pred CChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHHHh
Q 043735 233 GQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFNT 312 (336)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (336)
++++ +++.++++.++++..+.... . .......+.....+.|.++++
T Consensus 187 ~~~~------------------------------~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~p~~~~~ 232 (401)
T PRK11043 187 RKQS------------------------------QDALTFKQLLKSKTYLGNVL---I-FAACSAAFFAWLTGSPFILEQ 232 (401)
T ss_pred cccc------------------------------hHHHHHHHHHcChhHHHHHH---H-HHHHHHHHHHHHHHhHHHHHH
Confidence 0000 00012333333332221111 1 112222334556678888888
Q ss_pred cCCCCcHHHHHHHHHhHhhhe
Q 043735 313 IGFGNDASLMSAVITGLVNAC 333 (336)
Q Consensus 313 ~G~s~~~~~~~~~~~~~~~~~ 333 (336)
.|++..+.+.......+..++
T Consensus 233 ~g~s~~~~g~~~~~~~~~~~~ 253 (401)
T PRK11043 233 MGYSPADIGLSYVPQTIAFLV 253 (401)
T ss_pred cCCCHHHHHHHHHHHHHHHHH
Confidence 999988888766554444433
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.2e-21 Score=175.18 Aligned_cols=244 Identities=16% Similarity=0.162 Sum_probs=165.2
Q ss_pred ccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHhhhhhhhh
Q 043735 73 QYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIV-GRLLLGFGIGFAN 151 (336)
Q Consensus 73 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~r~l~g~~~~~~~ 151 (336)
+++|+|.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.++++++++++++++.+++ .|++.|++.+...
T Consensus 47 ~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~ 126 (455)
T TIGR00892 47 QIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNF 126 (455)
T ss_pred HHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhh
Confidence 344999999999999999999999999999999999999999999999999999999999888765 4689999988776
Q ss_pred hhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhccc-CCChHHHH
Q 043735 152 QSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVL-PDTPNSMI 230 (336)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~ 230 (336)
+....++.++++ ++|+++.++.+.+..+|..++|.+.+.+.+. +|||+.|++.+++.++..+..+++ ++.+...
T Consensus 127 ~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~---~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~- 201 (455)
T TIGR00892 127 QPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFES---FGWRGSFLILGGLLLHCCVCGALMRPVGPSQR- 201 (455)
T ss_pred hHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH---hChHHHHHHHHHHHHHHHHHHHHhCCCCcccc-
Confidence 777788889996 7899999999999999999999999888773 579999998887766554444333 3222100
Q ss_pred hcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHH
Q 043735 231 ERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLF 310 (336)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (336)
+.+.++ + +....++..++. +.+ ...+ +..+....+.++++ . ++......+......+....+.|.+.
T Consensus 202 -~~~~~~-~---~~~~~~~~~~~~--~~~-~~~~-~~~~~~~~~~~~~~---~-~~~~~~~~~l~~~~~~~~~~~l~~~~ 268 (455)
T TIGR00892 202 -VSKSKS-K---EGLPPDGSTKKL--SKK-STAE-KINRFLDFSLFTHR---G-FLVYLSGNVIMFLGFFAPIIFLVPYA 268 (455)
T ss_pred -cccccc-c---ccCCCCCccccc--ccc-chhh-hhhhhcchHHhcCc---h-HHHHHHHHHHHHHHccchHHHHHHHH
Confidence 000000 0 000000000000 000 0000 00000001233332 2 33333333333334455667888888
Q ss_pred HhcCCCCcHHHHHHHHHhHhhhee
Q 043735 311 NTIGFGNDASLMSAVITGLVNACA 334 (336)
Q Consensus 311 ~~~G~s~~~~~~~~~~~~~~~~~~ 334 (336)
++.|++..+++...++.+++.+++
T Consensus 269 ~~~g~s~~~~g~~~~~~~~~~~~~ 292 (455)
T TIGR00892 269 KDKGVDEYEAAFLLSIIGFVDIFA 292 (455)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHH
Confidence 889999999999988888777654
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-21 Score=177.25 Aligned_cols=240 Identities=18% Similarity=0.163 Sum_probs=166.1
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHhhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFA----QGVWMLIVGRLLLGFGIGFAN 151 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~----~~~~~~~~~r~l~g~~~~~~~ 151 (336)
|+|.++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++.... ++++.+.+.|++.|++.+..+
T Consensus 57 g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~ 136 (438)
T TIGR00712 57 GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGW 136 (438)
T ss_pred CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcch
Confidence 8899999999999999999999999999999999999999999999988877654 467778889999999999888
Q ss_pred hhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHH-hhcccCCChHHHH
Q 043735 152 QSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITI-GSLVLPDTPNSMI 230 (336)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~ 230 (336)
+.....+.|++|+++|++++++++.+..+|+.+++.+.+..... ..+||+.|++.+++.++..+ ..+++||+|+...
T Consensus 137 ~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~--~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~ 214 (438)
T TIGR00712 137 PPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW--FNDWHAALYFPAICAIIVALFAFAMMRDTPQSCG 214 (438)
T ss_pred HHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcC
Confidence 88889999999999999999999999999999998877654432 24799999987777665443 4456788764311
Q ss_pred hcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccch-hhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHH
Q 043735 231 ERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPW-GNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVL 309 (336)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (336)
.++ .+.. +. +.+.+..+ +.+.+.+.+... +..++++ ..+...+..++.....+.+..|.|.+
T Consensus 215 ~~~--~~~~------~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~~ 277 (438)
T TIGR00712 215 LPP--IEEY------RN--DYPDDYNE---KAEQELTAKEIFMQYVLPNK----LLWYIAIANVFVYLLRYGVLDWSPTY 277 (438)
T ss_pred CCC--chhc------cc--cccccccc---ccccccchHHHHHHHHccCc----hHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 000 0000 00 00000000 000000000001 1122222 23333333333334456677899999
Q ss_pred HHh-cCCCCcHHHHHHHHHhHhhhee
Q 043735 310 FNT-IGFGNDASLMSAVITGLVNACA 334 (336)
Q Consensus 310 ~~~-~G~s~~~~~~~~~~~~~~~~~~ 334 (336)
+++ .|++..++++...+.++.++++
T Consensus 278 l~~~~g~s~~~~~~~~~~~~~~~~ig 303 (438)
T TIGR00712 278 LKEVKHFALDKSSWAYFLYEYAGIPG 303 (438)
T ss_pred HHHccCCChhhHHHHHHHHHHHHHHH
Confidence 865 6999988888887777766654
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.3e-21 Score=171.52 Aligned_cols=197 Identities=16% Similarity=0.092 Sum_probs=147.1
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHhhhhh
Q 043735 74 YCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFA-----QGVWMLIVGRLLLGFGIG 148 (336)
Q Consensus 74 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~-----~~~~~~~~~r~l~g~~~~ 148 (336)
++|+|++|.+++.++..+++.++.++.|++.||+|.|+++.++.+++++.++..+++ ++++.+++.|++.|++ +
T Consensus 64 ~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g 142 (462)
T PRK15034 64 GFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-G 142 (462)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-H
Confidence 569999999999999999999999999999999999999999999999999998876 7999999999999997 7
Q ss_pred hhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhh-----ccc----------CCchhHHHHhhhHHHHH
Q 043735 149 FANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFA-----KIK----------GGWGWRLSLGGAMVPAL 213 (336)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~-----~~~----------~~~~w~~~~~~~~~~~~ 213 (336)
..++.....+++|+|+++||+++++.....++|..+++++...+. ... +..+||...++..++.+
T Consensus 143 ~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~i 222 (462)
T PRK15034 143 ANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLA 222 (462)
T ss_pred HhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHH
Confidence 788999999999999999999999997777777766655554432 110 12358887777666655
Q ss_pred HHHHhhc-ccCCChHHHHhcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHH
Q 043735 214 IITIGSL-VLPDTPNSMIERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPF 292 (336)
Q Consensus 214 ~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (336)
+..+..+ ++++.++ ++.+.....+.+|++ + .|...+.+
T Consensus 223 v~~i~~~~~~~~~~~-------------------------------------~~~~~~~~~~vlk~~---~-~Wllslly 261 (462)
T PRK15034 223 IATIAAWSGMNDIAS-------------------------------------SRASIADQLPVLQRL---H-LWLLSLLY 261 (462)
T ss_pred HHHHHHHHhCCCccc-------------------------------------cccCHHHHHHHhCCC---c-hhHHHHHH
Confidence 5554444 3443321 000001122233333 3 44455556
Q ss_pred HHHhhchhHHHHcHHHHHHh
Q 043735 293 FQQLTGINVIMFYAPVLFNT 312 (336)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~ 312 (336)
++.+.++..+.+++|++.++
T Consensus 262 ~~tFG~fvg~s~~lp~~~~~ 281 (462)
T PRK15034 262 LATFGSFIGFSAGFAMLAKT 281 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777788888899998865
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-21 Score=172.00 Aligned_cols=239 Identities=15% Similarity=0.084 Sum_probs=160.4
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHhhhhhhh
Q 043735 72 NQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQ-GVWMLIVGRLLLGFGIGFA 150 (336)
Q Consensus 72 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~r~l~g~~~~~~ 150 (336)
++++|+|..+.+++.++..++..+++++.|+++||+|||+++..+.++..++.+++.+.+ +++.+++.|++.|++.+.
T Consensus 29 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~- 107 (366)
T TIGR00886 29 KDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGS- 107 (366)
T ss_pred HHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchh-
Confidence 334499999999999999999999999999999999999999999999999999999999 999999999999998554
Q ss_pred hhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhccc-------CCchhHHHHh-hhHHHHH-HHHHhhcc
Q 043735 151 NQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIK-------GGWGWRLSLG-GAMVPAL-IITIGSLV 221 (336)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~-------~~~~w~~~~~-~~~~~~~-~~~~~~~~ 221 (336)
.+....++.|++|+++|+++.++.....++|..+++.+++.+.... ...+||+.++ ..++... ...+...+
T Consensus 108 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 187 (366)
T TIGR00886 108 FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFV 187 (366)
T ss_pred hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHh
Confidence 5667889999999999999999998777777777777766554311 1237998884 3343333 33333345
Q ss_pred cCCChHHHHhcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhH
Q 043735 222 LPDTPNSMIERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINV 301 (336)
Q Consensus 222 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (336)
.+|+|+.. ++ +.+.. .+++... .+++......+.++++. .+...+...+.....+.
T Consensus 188 ~~~~~~~~----~~-~~~~~-----~~~~~~~----------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 243 (366)
T TIGR00886 188 GADTPPGK----PA-TGKLS-----FKGARWS----------VGTGALGDQLKVFRDRH----TWILALLYSVTFGSFLG 243 (366)
T ss_pred cccCCccc----cc-chhcc-----ccccccc----------ccchhHHHHHHHHhccc----hhhHHHHHHHHHHHHHH
Confidence 56655310 00 00000 0000000 00000002233333332 22222233333334456
Q ss_pred HHHcHHHHHH-hcCCCCcHHHHHHHHHhHhhheec
Q 043735 302 IMFYAPVLFN-TIGFGNDASLMSAVITGLVNACAT 335 (336)
Q Consensus 302 ~~~~~~~~~~-~~G~s~~~~~~~~~~~~~~~~~~~ 335 (336)
...+.|.+++ ..|++..+++....+..+.+++++
T Consensus 244 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 278 (366)
T TIGR00886 244 VSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLAR 278 (366)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHh
Confidence 6778888885 579999999888877777766543
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-20 Score=169.63 Aligned_cols=149 Identities=19% Similarity=0.281 Sum_probs=131.3
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhH
Q 043735 75 CQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSV 154 (336)
Q Consensus 75 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~ 154 (336)
+|+|..+.+++.+++.++..++++++|+++||+|||+++..+.++..++.+.+.+.++++.+++.|++.|++.+...+..
T Consensus 38 ~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 117 (394)
T PRK11652 38 LNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMA 117 (394)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHH
Confidence 38999999999999999999999999999999999999999999999999998889999999999999999988888888
Q ss_pred HHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHH-hhcccCCCh
Q 043735 155 PLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITI-GSLVLPDTP 226 (336)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~e~~ 226 (336)
..+..|.+++++|+++.+..+.+..++..++|.+++.+.+ ..+||+.+++.++..++..+ ..++.||++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~---~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 118 RTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTT---LFGWRACYLFLLLLGAGVTFSMARWMPETR 187 (394)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 8889999999999999999999999999999999998876 35799999887666554433 345667754
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.6e-21 Score=171.95 Aligned_cols=224 Identities=16% Similarity=0.221 Sum_probs=167.2
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhH
Q 043735 75 CQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSV 154 (336)
Q Consensus 75 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~ 154 (336)
+|+|.++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+.+.+.++++.+.+.|++.|++.+...+..
T Consensus 21 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 100 (377)
T PRK11102 21 FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVI 100 (377)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHh-hcccCCChHHHHhcC
Q 043735 155 PLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIG-SLVLPDTPNSMIERG 233 (336)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~ 233 (336)
..++.|++|+++|+++.++.+....+|..++|.+++.+.+. .+||+.+++.+++.++..+. .+++||+++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 173 (377)
T PRK11102 101 NALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW---FSWHAIFWVLALAAILAAALVFFFIPETLPKE---- 173 (377)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cChHHHHHHHHHHHHHHHHHHHHhCCccCccc----
Confidence 99999999999999999999999999999999999888773 57999998777766555443 35667654210
Q ss_pred ChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHH-Hh
Q 043735 234 QRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLF-NT 312 (336)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 312 (336)
+++ +.+. ++ ...+.++.++++ +. +...+.........+....+.|.++ +.
T Consensus 174 ~~~-----------~~~~----~~----------~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (377)
T PRK11102 174 RRQ-----------PFHL----RT----------TIRNFASLFRHK---RV-LGYMLASGFSFAGMFSFLTAGPFVYIEL 224 (377)
T ss_pred ccC-----------CCCh----HH----------HHHHHHHHHcCh---HH-HHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 000 0000 00 001122333332 22 2222223333333445555666665 55
Q ss_pred cCCCCcHHHHHHHHHhHhhhee
Q 043735 313 IGFGNDASLMSAVITGLVNACA 334 (336)
Q Consensus 313 ~G~s~~~~~~~~~~~~~~~~~~ 334 (336)
.|+++.+.+.......+..+++
T Consensus 225 ~g~s~~~~g~~~~~~~~~~~~~ 246 (377)
T PRK11102 225 NGVSPQNFGYYFALNIVFLFVM 246 (377)
T ss_pred hCCCHHHHHHHHHHHHHHHHHH
Confidence 7999999988888777766554
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.9e-21 Score=168.60 Aligned_cols=154 Identities=14% Similarity=0.169 Sum_probs=134.7
Q ss_pred cccccCCCch-hHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhh
Q 043735 72 NQYCQYNSET-LTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFA 150 (336)
Q Consensus 72 ~~~~~~s~~~-~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~ 150 (336)
.+++|+|+++ .|.+.++++.++++++++.|+++||+|.|+++.++.+.+++.+++.++++++..+.+.|++.|++.|+.
T Consensus 53 ~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~ 132 (511)
T TIGR00806 53 LTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAAR 132 (511)
T ss_pred HHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhh---hHHHHHHHHHhhcccCCChH
Q 043735 151 NQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGG---AMVPALIITIGSLVLPDTPN 227 (336)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~---~~~~~~~~~~~~~~~~e~~~ 227 (336)
. ....++..|+|+++|+++.++...+..+|.++++++++.+.. +|||+...+ ......++.+..+++|..++
T Consensus 133 ~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s----~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~ 207 (511)
T TIGR00806 133 I-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVT----LGWISYSTLNIISLVFMTFSVFLALFLKRPKR 207 (511)
T ss_pred H-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCchhHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 9 999999999999999999999999999999999999998443 578876643 33333455556688886665
Q ss_pred HHH
Q 043735 228 SMI 230 (336)
Q Consensus 228 ~~~ 230 (336)
...
T Consensus 208 sl~ 210 (511)
T TIGR00806 208 SLF 210 (511)
T ss_pred hhh
Confidence 443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-20 Score=168.59 Aligned_cols=149 Identities=18% Similarity=0.236 Sum_probs=131.8
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhH
Q 043735 75 CQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSV 154 (336)
Q Consensus 75 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~ 154 (336)
+|.|..+.++..+.+.++..+++++.|+++||+|||+++..+.++..++.+.+...++++.+++.|++.|++.+...+..
T Consensus 33 ~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 112 (392)
T PRK10473 33 LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVA 112 (392)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHH
Confidence 38899999999999999999999999999999999999999999999999999989999999999999999999989999
Q ss_pred HHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHh-hcccCCCh
Q 043735 155 PLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIG-SLVLPDTP 226 (336)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~ 226 (336)
..++.|++|+++|+++.+..+....+|..++|.+++.+.+ ..+|++.+++.++..++..+. .+++||++
T Consensus 113 ~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~---~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 113 FAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIML---KFPWQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999888765 357999998877665554443 34567654
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.4e-20 Score=167.57 Aligned_cols=224 Identities=13% Similarity=0.095 Sum_probs=153.7
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHH---h-hhhHHHHHHHHHHHhhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALING---F-AQGVWMLIVGRLLLGFGIGFAN 151 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~---~-~~~~~~~~~~r~l~g~~~~~~~ 151 (336)
|+|.++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++++.+. . .++++.+++.|++.|++.+...
T Consensus 44 g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~ 123 (402)
T TIGR00897 44 GLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFA 123 (402)
T ss_pred CCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHH
Confidence 88999999999999999999999999999999999999999999988876542 3 2578888899999999988887
Q ss_pred hhHHHHhhhcCCCccchhHHHHHHHHHHHHH-HHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHH-hhcccCCChHHH
Q 043735 152 QSVPLYLSEMAPYKYRGALNIGFQLSITIGI-LIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITI-GSLVLPDTPNSM 229 (336)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~e~~~~~ 229 (336)
+.....+.+++|+++|++++++++.+.++|. .++|.+++.+.+. .||+..++.......+..+ ..++.++.++..
T Consensus 124 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (402)
T TIGR00897 124 YSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA---FGEMNTLWSALAFVLTGGVIALFSNKDIFTPQ 200 (402)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---cchHHHHHHHHHHHHHHHHHHHhccCCCCCcc
Confidence 8888889999999999999999999999996 5788888877653 4554444332222222222 223344432100
Q ss_pred HhcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHH
Q 043735 230 IERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVL 309 (336)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (336)
.+++ ++ +.++ .+..++++++++. ++...+..++.....+....|.|.+
T Consensus 201 -~~~~-------------~~----~~~~----------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~ 248 (402)
T TIGR00897 201 -HMQT-------------RE----KFSE----------LGKAATILFTNPN----VLLGGMVRIINTIGLFGFAVFLPMF 248 (402)
T ss_pred -cccC-------------Cc----chhh----------HHHHHHHHHcChh----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00 0000 0011223343332 2223233334444566778899999
Q ss_pred HHhcCCCCcHHHHHHHHHhHhhhee
Q 043735 310 FNTIGFGNDASLMSAVITGLVNACA 334 (336)
Q Consensus 310 ~~~~G~s~~~~~~~~~~~~~~~~~~ 334 (336)
.++.|++..+++.......++++++
T Consensus 249 ~~~~g~s~~~~~~~~~~~~~~~~ig 273 (402)
T TIGR00897 249 VAELGFSTSEWLQIWGTFFFTNIVF 273 (402)
T ss_pred HHHcCCChhHHHHHHHHHHHHHHHH
Confidence 9889999988887777766666554
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.8e-20 Score=167.69 Aligned_cols=122 Identities=17% Similarity=0.222 Sum_probs=110.0
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHhhhhh
Q 043735 72 NQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALIN---GFAQGVWMLIVGRLLLGFGIG 148 (336)
Q Consensus 72 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~---~~~~~~~~~~~~r~l~g~~~~ 148 (336)
++++|+|.++.+++.+.+.+++.+++++.|++.||+|||+++..+.++++++++++ ..+++++.++++|+++|++.+
T Consensus 53 ~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g 132 (438)
T PRK10133 53 QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLG 132 (438)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 33449999999999999999999999999999999999999999999999999775 457899999999999999999
Q ss_pred hhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 043735 149 FANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFA 193 (336)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~ 193 (336)
...+....++.|+.++++|...++..+....+|..+++.++..+.
T Consensus 133 ~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 133 CLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999877777777889999999999999998877554
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-19 Score=162.31 Aligned_cols=224 Identities=15% Similarity=0.116 Sum_probs=157.9
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVP 155 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~ 155 (336)
+.+..+.+++.+.+.+++.++++++|+++||+|||++++++.++..++++.+.+..+. ++.|+++|++.+...|...
T Consensus 34 ~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~ 110 (393)
T PRK11195 34 HYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKY 110 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 6778889999999999999999999999999999999999999999988877766654 6789999999999999999
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCCChHHHHhcCCh
Q 043735 156 LYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQR 235 (336)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 235 (336)
+++.|++|+++|++++++.+....+|..++|.+++.+.+. .|+..+.+.+...++..+..+.+||+++....++.
T Consensus 111 a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~----~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~- 185 (393)
T PRK11195 111 GILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP----HAEAALAVCALIYLLAALFNLFIPRLGARRPGQSW- 185 (393)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCC-
Confidence 9999999999999999999999999999999999999873 36666665554444444445667876521100000
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHHH-hcC
Q 043735 236 DEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFN-TIG 314 (336)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G 314 (336)
+. ....++.. ..++.+++++..+...+...+.+. ......+..|.+.+ .+|
T Consensus 186 -~~-------------~~~~~~~~----------~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~lg 237 (393)
T PRK11195 186 -NP-------------IALLRDFF----------HACRVLWRDKLGRFSLAGTTLFWG----AGATLRFLVLAWAPVALG 237 (393)
T ss_pred -CH-------------HHHHHHHH----------HHHHHHHhCchhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcC
Confidence 00 00000000 012234444433332222222111 12233344455553 479
Q ss_pred CCCcHHHHHHHHHhHhhheec
Q 043735 315 FGNDASLMSAVITGLVNACAT 335 (336)
Q Consensus 315 ~s~~~~~~~~~~~~~~~~~~~ 335 (336)
+++.+++......+++.++++
T Consensus 238 ~s~~~~G~~~~~~~~g~i~g~ 258 (393)
T PRK11195 238 ITLNQPAYLQAVVAIGIAVGA 258 (393)
T ss_pred CChhHHHHHHHHHHHHHHHHH
Confidence 999999999998888877654
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-19 Score=162.44 Aligned_cols=222 Identities=19% Similarity=0.231 Sum_probs=161.7
Q ss_pred ccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhh
Q 043735 73 QYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQ 152 (336)
Q Consensus 73 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~ 152 (336)
+++|+|.++.+++.+++.++..+++++.|+++||+|||+++..+.++..++.+.+ ..++.+.+++.|++.|++.+...+
T Consensus 28 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~ 106 (355)
T TIGR00896 28 SALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINV 106 (355)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhc
Confidence 3349999999999999999999999999999999999999999998888888777 678888999999999999998888
Q ss_pred hHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCCChHHHHhc
Q 043735 153 SVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIER 232 (336)
Q Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 232 (336)
....++.|++| ++|+++.+.++.+.++|..+++.+.+.+.+..+ .+||+.|...++..++... .++|+.++.
T Consensus 107 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~-~~w~~~f~~~~~~~~~~~~--~~~~~~~~~---- 178 (355)
T TIGR00896 107 LLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSG-GHWQQALAWWALPALLALL--AWIPQVRRR---- 178 (355)
T ss_pred cchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHH--HHhhhhccc----
Confidence 88888999886 579999999999999999999998888765422 2499888765554333222 233433210
Q ss_pred CChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHHHh
Q 043735 233 GQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFNT 312 (336)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (336)
.+ ++++..+...++.+|++ . .+...+...+....++....|.|.++++
T Consensus 179 ~~----------------------------~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~lp~~~~~ 226 (355)
T TIGR00896 179 VA----------------------------ANQTTTRLTPVRIWRSP---L-AWQVTVFFGLQSGLYYSLIGWLPAILIS 226 (355)
T ss_pred cC----------------------------CCCCCCCCCCchhhcCH---h-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00000011223333332 2 2222333333344455667889999988
Q ss_pred cCCCCcHHHHHHHHHhHhhheec
Q 043735 313 IGFGNDASLMSAVITGLVNACAT 335 (336)
Q Consensus 313 ~G~s~~~~~~~~~~~~~~~~~~~ 335 (336)
.|++..+.+...++..++.++++
T Consensus 227 ~g~~~~~~g~~~~~~~~~~i~~~ 249 (355)
T TIGR00896 227 HGASAATAGSLLALMQLAQAASA 249 (355)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888777654
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-19 Score=166.62 Aligned_cols=147 Identities=16% Similarity=0.205 Sum_probs=130.5
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVP 155 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~ 155 (336)
|.|..+.+++.+.+.++..++.+++|+++||+|||+++..+.++.+++.+++.++++++.+++.|+++|++.+...+...
T Consensus 41 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~ 120 (471)
T PRK10504 41 GESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGR 120 (471)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999998888889999999999999999999999999
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhh-cccCCC
Q 043735 156 LYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGS-LVLPDT 225 (336)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~ 225 (336)
.++.|++|+++|+++.+......++|..++|.+++.+.+. .+||+.|.+......+..+.. ...|+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~---~gw~~~f~~~~~~~~l~~~~~~~~~~~~ 188 (471)
T PRK10504 121 LTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY---ASWHWIFLINIPVGIIGAIATLMLMPNY 188 (471)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999999999999998873 579999987766555444443 334443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-20 Score=157.64 Aligned_cols=234 Identities=23% Similarity=0.246 Sum_probs=182.4
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhh
Q 043735 72 NQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFAN 151 (336)
Q Consensus 72 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~ 151 (336)
+..+|.+..+..+++...+.+..+++..+|.++|++|||+.+....+..++..++.+.++|+..+.+.|.+.|+|.|+ .
T Consensus 105 ~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~ 183 (528)
T KOG0253|consen 105 DEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-L 183 (528)
T ss_pred HhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-c
Confidence 445588889999999999999999999999999999999999999999999999999999999999999999999998 8
Q ss_pred hhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCCChHHHHh
Q 043735 152 QSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIE 231 (336)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 231 (336)
|...++-.|..|..+|...+-.. ..+.+|.++...+.-.... +.||||.......+..+...+.+++||+||+...
T Consensus 184 pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~---~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~ 259 (528)
T KOG0253|consen 184 PVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMS---NFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLA 259 (528)
T ss_pred cHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhh
Confidence 88899999999999998766555 7888899988888877766 3579998888888877788888899999999999
Q ss_pred cCChHHHHHHHHHHcCCCcch-------------HHHHHHHH---HHHhccccccchhhhccccchhHHHHHHHHHHHHH
Q 043735 232 RGQRDEAREKLRKIRGVNDVD-------------EEFNDLVA---ASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQ 295 (336)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (336)
++++.++.++++++...|... +|.++... +.+..++...+..+++.+..++.++....+++...
T Consensus 260 ~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgna 339 (528)
T KOG0253|consen 260 KGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNA 339 (528)
T ss_pred cCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhH
Confidence 999999999988887665321 11111110 11112233445566777667777666666554444
Q ss_pred hhchhHHHHcHHHHHH
Q 043735 296 LTGINVIMFYAPVLFN 311 (336)
Q Consensus 296 ~~~~~~~~~~~~~~~~ 311 (336)
+ .+|+.....+.+++
T Consensus 340 f-syyg~VLlttelfq 354 (528)
T KOG0253|consen 340 F-SYYGSVLLTTELFQ 354 (528)
T ss_pred H-HHHHHHHHHHHHHh
Confidence 4 45555555555543
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.8e-19 Score=159.29 Aligned_cols=136 Identities=18% Similarity=0.193 Sum_probs=117.1
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHH---h-----hhhHHHHHHHHHHHhh
Q 043735 74 YCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALING---F-----AQGVWMLIVGRLLLGF 145 (336)
Q Consensus 74 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~---~-----~~~~~~~~~~r~l~g~ 145 (336)
++|+|.++.+++.+++.++..++++++|+++||+|||+++..+.+...++.+... . .++++.+++.|+++|+
T Consensus 45 ~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 124 (392)
T PRK12382 45 DLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGF 124 (392)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHH
Confidence 3499999999999999999999999999999999999999998888776654322 1 3578889999999999
Q ss_pred hhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHH
Q 043735 146 GIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPA 212 (336)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~ 212 (336)
+.+...+....++.|++|+++|+++++..+.+..+|..++|++++.+.+ ..||++.+++..+..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~---~~g~~~~~~~~~~~~ 188 (392)
T PRK12382 125 GESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHS---HFGFAALALTTMVLP 188 (392)
T ss_pred HHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHh---ccChHHHHHHHHHHH
Confidence 9998888888999999999999999999999999999999999988876 357988766544443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-19 Score=163.23 Aligned_cols=138 Identities=24% Similarity=0.180 Sum_probs=120.0
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhh--------hhHHHHHHHHHHHhhh
Q 043735 75 CQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFA--------QGVWMLIVGRLLLGFG 146 (336)
Q Consensus 75 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~--------~~~~~~~~~r~l~g~~ 146 (336)
+|.|..+.+++.+++.++..+++++.|+++||+|||+++..+.++++++.+.+.++ .+++.+++.|++.|++
T Consensus 46 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 125 (399)
T PRK05122 46 LGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIG 125 (399)
T ss_pred cCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhh
Confidence 48899999999999999999999999999999999999999999888876655443 2566889999999999
Q ss_pred hhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHH
Q 043735 147 IGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALII 215 (336)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~ 215 (336)
.+...+....++.|++|+++|+++.++...+..+|..+++.+++.+.+ ..||++.+++..+..++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~---~~g~~~~~~~~~~~~~~~ 191 (399)
T PRK05122 126 ESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYH---WGGLAGLGLLIMLLALLG 191 (399)
T ss_pred HHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHH---cccHHHHHHHHHHHHHHH
Confidence 999999989999999999999999999999999999999999998877 357998887655554433
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-19 Score=162.88 Aligned_cols=170 Identities=18% Similarity=0.184 Sum_probs=138.2
Q ss_pred HHHHHHHHhhhccccccccchhhHHhhhccchhhhcccCCCCcccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhch
Q 043735 30 AAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQANSSTNQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGR 109 (336)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Gr 109 (336)
++..++..|+.....++. +|.+.+++ |+|..+.+++.+.+.+++.+++++.|++.||+||
T Consensus 8 ~~~~f~~~G~~~~~~~~l--~~~~~~~~------------------~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~ 67 (410)
T TIGR00885 8 ITSLFALWGFANDITNPM--VPQFQQAF------------------TLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSY 67 (410)
T ss_pred HHHHHHHHHHHHHhHHHH--HHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 334446666666554433 35554444 8999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHhhhhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHH
Q 043735 110 KKSMLFGGVLFFAGALINGF---AQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIAN 186 (336)
Q Consensus 110 r~~l~~~~~~~~i~~~~~~~---~~~~~~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 186 (336)
|+++..+.++++++.++... .++++.+++.|++.|++.|...+....++.+..|+++|++..++.+...++|..++|
T Consensus 68 r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~ 147 (410)
T TIGR00885 68 KAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGM 147 (410)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999877644 357999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccc-----------------------CCchhHHHHhhhHHHHHHHHHhh
Q 043735 187 VLNYFFAKIK-----------------------GGWGWRLSLGGAMVPALIITIGS 219 (336)
Q Consensus 187 ~l~~~~~~~~-----------------------~~~~w~~~~~~~~~~~~~~~~~~ 219 (336)
.+...+.... +..+||+.|++.+++.++..+..
T Consensus 148 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 148 VVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred HHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988775321 01369999987777655544433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-19 Score=161.83 Aligned_cols=119 Identities=20% Similarity=0.340 Sum_probs=112.8
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVP 155 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~ 155 (336)
|.|..+.+++.+.+.++..+++++.|+++||+|||+++..+.++.++++.+++++++++.+++.|++.|++.+...+...
T Consensus 37 ~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~ 116 (381)
T PRK03633 37 HLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVE 116 (381)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043735 156 LYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAK 194 (336)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~ 194 (336)
..+.+..++++|+++++.+..+.++|..++|.+.+.+.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 155 (381)
T PRK03633 117 SALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVST 155 (381)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888899999999999999999999999999999988765
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.9e-19 Score=158.98 Aligned_cols=146 Identities=16% Similarity=0.183 Sum_probs=124.3
Q ss_pred cCCCch-----hHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhh
Q 043735 76 QYNSET-----LTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFA 150 (336)
Q Consensus 76 ~~s~~~-----~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~ 150 (336)
|++..+ .+++.++..++..+++++.|+++||+|||+++..+.++.+++.+++.+.++++.+++.|++.|++.+ .
T Consensus 45 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~ 123 (408)
T PRK09874 45 GVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-F 123 (408)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-h
Confidence 666544 4888999999999999999999999999999999999999999888888999999999999999754 4
Q ss_pred hhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhh-cccCCC
Q 043735 151 NQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGS-LVLPDT 225 (336)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~ 225 (336)
.+....++.|.+|+++|+++.+....+..+|..++|.+.+.+.+. .+||+.+++.++..++..+.. +++||+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 124 VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADS---YGLRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 677778899999999999999999999999999999999988763 579999988777655554443 455654
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.7e-19 Score=158.54 Aligned_cols=146 Identities=15% Similarity=0.237 Sum_probs=130.3
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhH
Q 043735 75 CQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSV 154 (336)
Q Consensus 75 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~ 154 (336)
+|+|..+.|++.+...+...+.+++.|+++||+|||+++..+.++..++.+.+.+.++++.+++.|++.|++.+...+..
T Consensus 41 ~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~ 120 (400)
T PRK11646 41 LGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPR 120 (400)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHh-hcccCC
Q 043735 155 PLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIG-SLVLPD 224 (336)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e 224 (336)
.+++.|++|+++|+++.++.+....+|..++|.+++.+.+ ++|++.|++.++..++..+. .++.||
T Consensus 121 ~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~----~g~~~~f~~~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 121 TALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ----YDFRLVCATGAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 9999999999999999999999999999999999998874 47999998877665544433 344554
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.3e-19 Score=158.27 Aligned_cols=226 Identities=23% Similarity=0.335 Sum_probs=156.5
Q ss_pred CCCchhHHHHHH-----HHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHH
Q 043735 77 YNSETLTLFTSS-----LYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVW--------MLIVGRLLL 143 (336)
Q Consensus 77 ~s~~~~~~~~~~-----~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~--------~~~~~r~l~ 143 (336)
.++++.+.+.+. .+++..+++++.|+++||+|||+++..+.++..++.+++.++++++ .+++.|+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~ 106 (394)
T TIGR00883 27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQ 106 (394)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHH
Confidence 344555544433 3344457899999999999999999999999999999999888764 478899999
Q ss_pred hhhhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhccc-----CCchhHHHHhhhHHHHHHHHHh
Q 043735 144 GFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIK-----GGWGWRLSLGGAMVPALIITIG 218 (336)
Q Consensus 144 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~-----~~~~w~~~~~~~~~~~~~~~~~ 218 (336)
|++.+...+....++.|++|+++|++..+..+.+..+|..+++.+...+.... ..++||+.+++.++..++..+.
T Consensus 107 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 186 (394)
T TIGR00883 107 GFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYL 186 (394)
T ss_pred HhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876654311 1368999998777665555444
Q ss_pred hcccCCChHHHHhcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhc
Q 043735 219 SLVLPDTPNSMIERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTG 298 (336)
Q Consensus 219 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (336)
....||++++..++ +++++.+.+.++.++++. ++ ++......+.....
T Consensus 187 ~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~ 234 (394)
T TIGR00883 187 RRNLEETPVFEKAQ------------------------------EKHKKKRGPIRETLTKHR-KP-FLLGLGLVIATTTT 234 (394)
T ss_pred HHhcCCChhHHHHH------------------------------hccccccCCHHHHHHhch-HH-HHHHHHHHHHHHHH
Confidence 44566655321100 000111223333443322 12 22223333333444
Q ss_pred hhHHHHcHHHHH-HhcCCCCcHHHHHHHHHhHhhhee
Q 043735 299 INVIMFYAPVLF-NTIGFGNDASLMSAVITGLVNACA 334 (336)
Q Consensus 299 ~~~~~~~~~~~~-~~~G~s~~~~~~~~~~~~~~~~~~ 334 (336)
.+....+.|.+. ++.|++..+.+.......+..+++
T Consensus 235 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 271 (394)
T TIGR00883 235 FYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFIT 271 (394)
T ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence 556677888888 568999988888777776666543
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-19 Score=155.26 Aligned_cols=226 Identities=20% Similarity=0.207 Sum_probs=172.6
Q ss_pred CCcccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhH---HHHHHHHHHHhhh
Q 043735 70 STNQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGV---WMLIVGRLLLGFG 146 (336)
Q Consensus 70 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~---~~~~~~r~l~g~~ 146 (336)
.+++++|+|+.|.+++.++..+...+..++.|.+.||+|.|++...+.++..+.++..+++.+. +++++.+++.|++
T Consensus 39 ~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~ 118 (417)
T COG2223 39 FIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA 118 (417)
T ss_pred hhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcc
Confidence 3467779999999999999999999999999999999999999999999999999999887644 5999999999997
Q ss_pred hhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHh-hcccCCC
Q 043735 147 IGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIG-SLVLPDT 225 (336)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~ 225 (336)
|..+.+...++++++|++++|.+++++. ..|+|..+..+++..+....+...|+....+.....++..+. ++.+.|.
T Consensus 119 -GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~ 196 (417)
T COG2223 119 -GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDV 196 (417)
T ss_pred -cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5568888999999999999999999999 999999998888888876432112888887766665554444 4556666
Q ss_pred hHHHHhcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHc
Q 043735 226 PNSMIERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFY 305 (336)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (336)
|......++ ..+...+.+.++ +..|.+.+.+...+.++..+..+
T Consensus 197 p~~r~~~~~--------------------------------~~~~~~~~v~~~----~~~W~lsllY~~tFG~Fvgfs~~ 240 (417)
T COG2223 197 PEHRASVKP--------------------------------QLPAQLKAVFSN----KDTWLLSLLYFATFGGFVGFSAY 240 (417)
T ss_pred hhhhccccc--------------------------------cchhHHHHHhcC----cchHHHHHHHHHHHHHHHHHHHH
Confidence 531000000 000112222222 23555666677888889999999
Q ss_pred HHHHH-HhcCCCCcHHHHHHHHHhHhhhe
Q 043735 306 APVLF-NTIGFGNDASLMSAVITGLVNAC 333 (336)
Q Consensus 306 ~~~~~-~~~G~s~~~~~~~~~~~~~~~~~ 333 (336)
+|.++ +++|.+..+++.......+.+.+
T Consensus 241 l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l 269 (417)
T COG2223 241 LPMYLVTQFGLSPVTAGLIAFLFPLIGAL 269 (417)
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHHHH
Confidence 99998 46899999988777666655543
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-19 Score=163.51 Aligned_cols=223 Identities=15% Similarity=0.083 Sum_probs=159.8
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGF-----AQGVWMLIVGRLLLGFGIGFA 150 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~-----~~~~~~~~~~r~l~g~~~~~~ 150 (336)
+.+..+.+++.+...++..+++++.|+++||+|||+++..+.++.+++.+.... .++++.+.+.|++.|++.+..
T Consensus 48 ~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 127 (417)
T PRK10489 48 TGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLG 127 (417)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Confidence 668889999999999999999999999999999999999888877776655432 457888899999999998888
Q ss_pred hhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCCChHHHH
Q 043735 151 NQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMI 230 (336)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 230 (336)
.+....++.|+.|+++|+++.++.+....+|..++|.+++.+.+. .+|++.+++.++..++..+..+.+|++++..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 203 (417)
T PRK10489 128 VTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAA---GGVAWNYGLAAAGTFITLLPLLRLPALPPPP- 203 (417)
T ss_pred HHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHhCCCCCCCC-
Confidence 888889999999999999999999999999999999999988763 4688888877766666555556677654210
Q ss_pred hcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHH
Q 043735 231 ERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLF 310 (336)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (336)
++. + +..++. ...++..++++..+.. ..... +.. .......+.|.+.
T Consensus 204 --~~~-------------~---~~~~~~----------~~~~~~~~~~~~~~~~---~~~~~-~~~-~~~~~~~~~p~~~ 250 (417)
T PRK10489 204 --QPR-------------E---HPLRSL----------LAGFRFLLASPVVGGI---ALLGG-LLT-MASAVRVLYPALA 250 (417)
T ss_pred --ccc-------------c---cchHHH----------HHHHHHHHcChHHHHH---HHHHH-HHH-HHHhHHHhhHHHH
Confidence 000 0 000000 0112223333322221 11111 111 1234566778888
Q ss_pred Hh-cCCCCcHHHHHHHHHhHhhheec
Q 043735 311 NT-IGFGNDASLMSAVITGLVNACAT 335 (336)
Q Consensus 311 ~~-~G~s~~~~~~~~~~~~~~~~~~~ 335 (336)
++ .|++..+.++..+..+++.+++.
T Consensus 251 ~~~~g~~~~~~g~~~~~~~~g~~ig~ 276 (417)
T PRK10489 251 DEVWQMGAAQIGLLYAAVPLGAALGA 276 (417)
T ss_pred HhccCCChhHhHHHHHHHHHHHHHHH
Confidence 77 89999888888888777766543
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=154.70 Aligned_cols=197 Identities=27% Similarity=0.456 Sum_probs=163.4
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVP 155 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~ 155 (336)
|.+..+.+++.+...++..+++++.|+++||+|||+.+..+.++..++.+.....++++.+.+.|++.|++.+...+...
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 109 (352)
T cd06174 30 GLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAA 109 (352)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCCChHHHHhcCCh
Q 043735 156 LYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQR 235 (336)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 235 (336)
.++.|++|+++|++..+..+....+|..++|.+++.+.+. .+|++.+++.++..++..+..++++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~------------ 174 (352)
T cd06174 110 ALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES---LGWRWLFLILAILGLLLALLLLFLL------------ 174 (352)
T ss_pred HHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 9999999999999999999999999999999999998874 4699999887777665555443332
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHHHhc-C
Q 043735 236 DEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFNTI-G 314 (336)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G 314 (336)
+ ..+...+..+...........+.|.+.++. |
T Consensus 175 ----------------------------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (352)
T cd06174 175 ----------------------------------------------R-LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLG 207 (352)
T ss_pred ----------------------------------------------H-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 1 122333334444445566677777777664 8
Q ss_pred CCCcHHHHHHHHHhHhhhee
Q 043735 315 FGNDASLMSAVITGLVNACA 334 (336)
Q Consensus 315 ~s~~~~~~~~~~~~~~~~~~ 334 (336)
.+..+.+......++...++
T Consensus 208 ~~~~~~~~~~~~~~~~~~i~ 227 (352)
T cd06174 208 LSAAEAGLLLSLFGLGGILG 227 (352)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 88888888777777766654
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-18 Score=156.91 Aligned_cols=147 Identities=11% Similarity=0.082 Sum_probs=128.6
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhH
Q 043735 75 CQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSV 154 (336)
Q Consensus 75 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~ 154 (336)
+|+|..+.+++.+...++..+++++.|+++||+|||+++..+.++..++.+...+.++++.+++.|.+.|.+.+...+..
T Consensus 38 ~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 117 (395)
T PRK10054 38 YSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVL 117 (395)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999888899999999889998888878778888
Q ss_pred HHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhh-cccCCC
Q 043735 155 PLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGS-LVLPDT 225 (336)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~ 225 (336)
..+..|..|+++|+++.++.+...++|..++|.+++.+.+ .+|+..|++.++..++..+.. +++||+
T Consensus 118 ~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~----~g~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 118 KAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM----QSINLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999998874 369999987776665554433 445544
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-18 Score=154.02 Aligned_cols=151 Identities=19% Similarity=0.260 Sum_probs=123.6
Q ss_pred ccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhh
Q 043735 73 QYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLF-GGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFAN 151 (336)
Q Consensus 73 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~-~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~ 151 (336)
+++|.|.++.+++.+.+.++..+.+++.|+++||+||||.++. +.++..++.++++++++++.+++.|++.|.+.+...
T Consensus 26 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 105 (375)
T TIGR00899 26 EEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTAN 105 (375)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhH
Confidence 3448999999999999999999999999999999999887654 556666677788888999999999999988877788
Q ss_pred hhHHHHhhhcCCCccchhH--HHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhh-cccCCCh
Q 043735 152 QSVPLYLSEMAPYKYRGAL--NIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGS-LVLPDTP 226 (336)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~ 226 (336)
+....+..|+.|+++|++. .+....+.++|..++|.+++.+.+ ..+||+.|++.+++.++..+.. +++||.|
T Consensus 106 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~---~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T TIGR00899 106 PQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLAL---GFGFTVMFLTAALAFVLCGVLVWLFLPSYP 180 (375)
T ss_pred HHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHH---hcccHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 8888888999887777654 577778888999999999998876 3579999998877765555444 4578765
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.2e-19 Score=150.24 Aligned_cols=150 Identities=18% Similarity=0.215 Sum_probs=120.8
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVP 155 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~ 155 (336)
+.+..-.|.+.+.+.+...+.++.+|.++||+|||++++.++...++...+.+.+.++..+++.|++.|+.-|- ..+..
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgn-l~v~r 142 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGN-LSVIR 142 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hHHHH
Confidence 34556679999999999999999999999999999999999999999999999999997777779999998664 56778
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhc---ccCCchhHHHHhhhHHHHHH-HHHhhcccCCCh
Q 043735 156 LYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAK---IKGGWGWRLSLGGAMVPALI-ITIGSLVLPDTP 226 (336)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~---~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~e~~ 226 (336)
++++|..++++|+.+++...+..++|.++||.+++++.. ..+.+-.-.+-++..+.+.. .....+++||+-
T Consensus 143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL 217 (451)
T KOG2615|consen 143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETL 217 (451)
T ss_pred HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 999999999999999999999999999999999999987 22211111111222223332 333447889983
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.1e-18 Score=151.07 Aligned_cols=222 Identities=16% Similarity=0.176 Sum_probs=151.7
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhh-----chhHH-HHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHhh
Q 043735 75 CQYNSETLTLFTSSLYLAALLSSLVASSVTRKF-----GRKKS-MLFGGVLFFAGALINGFA---QGVWMLIVGRLLLGF 145 (336)
Q Consensus 75 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-----Grr~~-l~~~~~~~~i~~~~~~~~---~~~~~~~~~r~l~g~ 145 (336)
+|+|.++.++.... .+...+ .+++|+++||+ ||||. ++.+.++.+++....++. .+.+.+....++.++
T Consensus 18 ~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~ 95 (356)
T TIGR00901 18 KNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAF 95 (356)
T ss_pred cCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHH
Confidence 39999999999755 444454 99999999998 89886 566777777777666666 456667777778888
Q ss_pred hhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccC-----CchhHHHHhhhHHHHHHHHHhhc
Q 043735 146 GIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKG-----GWGWRLSLGGAMVPALIITIGSL 220 (336)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~-----~~~w~~~~~~~~~~~~~~~~~~~ 220 (336)
+.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+....+ .++||..|++.++..++..+..+
T Consensus 96 ~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 96 FSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTL 175 (356)
T ss_pred HHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 8888888889999999999999999999999999999999999988876432 23499999988877666555544
Q ss_pred c-cCCChHHHHhcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhch
Q 043735 221 V-LPDTPNSMIERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGI 299 (336)
Q Consensus 221 ~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (336)
+ .||+++. ++++++ +.. +.+..++++++++..++.+..... .+......
T Consensus 176 ~~~~e~~~~---~~~~~~----------------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 225 (356)
T TIGR00901 176 FLAKEPQED---ASVPKP----------------LTQ----------AVLKPIREFFQRKNMIQALLLLLL-IVLYKLGD 225 (356)
T ss_pred HhccCCCcc---cccchh----------------HHH----------HHHHHHHHHHHhcCchHHHHHHHH-HHHHHHHH
Confidence 3 4664310 000000 000 001123344444332333333332 23333345
Q ss_pred hHHHHcHHHHHHhcCCCCcHHHHHHHHHh
Q 043735 300 NVIMFYAPVLFNTIGFGNDASLMSAVITG 328 (336)
Q Consensus 300 ~~~~~~~~~~~~~~G~s~~~~~~~~~~~~ 328 (336)
+....+.|.++++.|++.++.+....+.+
T Consensus 226 ~~~~~~~~~~l~~~g~~~~~~g~~~~~~~ 254 (356)
T TIGR00901 226 SAATVLTTLFLLDMGFSKEEIALVAKING 254 (356)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhHHHH
Confidence 56667888888779999999887766554
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.4e-18 Score=157.70 Aligned_cols=169 Identities=18% Similarity=0.188 Sum_probs=128.6
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHHHHHhhhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALI---NGFAQGVWMLIVGRLLLGFGIGFANQ 152 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~---~~~~~~~~~~~~~r~l~g~~~~~~~~ 152 (336)
|++..+.++..+...++..++.++.|+++||+|||+++..+.++..+.... ...+++...+++++++.|++.+....
T Consensus 282 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 361 (490)
T PRK10642 282 HYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTG 361 (490)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 777777788888888999999999999999999999988877654443322 22234567778889999988777777
Q ss_pred hHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCCChHHHHhc
Q 043735 153 SVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIER 232 (336)
Q Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 232 (336)
....++.|.+|++.|+++.+..+....+++.++|.+.+++.+..+ +|+..+++..+++++..+..+++||+|+++.++
T Consensus 362 ~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~--~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~ 439 (490)
T PRK10642 362 VMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQ--NLMMPAYYLMVVAVIGLITGVTMKETANRPLKG 439 (490)
T ss_pred HHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHHHHHhccccCCCCCC
Confidence 778889999999999999997444455667788888888776322 466666655666666666667789999987654
Q ss_pred -----CChHHHHHHHHHHc
Q 043735 233 -----GQRDEAREKLRKIR 246 (336)
Q Consensus 233 -----~~~~~~~~~~~~~~ 246 (336)
++.+|+++.+++.+
T Consensus 440 ~~~~~~~~~~a~~~l~~~~ 458 (490)
T PRK10642 440 ATPAASDIQEAKEILVEHY 458 (490)
T ss_pred ccccccchhhHHHHhhccc
Confidence 77788888887776
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.8e-17 Score=138.37 Aligned_cols=224 Identities=21% Similarity=0.244 Sum_probs=181.1
Q ss_pred CCcccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhh
Q 043735 70 STNQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGF 149 (336)
Q Consensus 70 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~ 149 (336)
++++++|+|.+..|+++++..+...+.+++..++++|+|.++.+..++++.+++..+-... +...++.+-.+.|.+.+.
T Consensus 37 ~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav 115 (395)
T COG2807 37 EIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAV 115 (395)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHH
Confidence 3467779999999999999999999999999999999999999999999999999988876 677888999999999999
Q ss_pred hhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCCChHHH
Q 043735 150 ANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSM 229 (336)
Q Consensus 150 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 229 (336)
.+...+..+-+.||+| -+..+++|.+..++|..+++.+...+.+.. .+||....+-+.+++++.+.++ |...|..
T Consensus 116 ~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~--~gW~~aL~~WAl~allAl~~Wl--Pq~~r~~ 190 (395)
T COG2807 116 INVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHS--GGWRGALGFWALLALLALLIWL--PQALREQ 190 (395)
T ss_pred HHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhh--ccHHHHHHHHHHHHHHHHHHHh--hhccccc
Confidence 9999999999999865 699999999999999999999998888764 3799998888888887776654 3211100
Q ss_pred HhcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHH
Q 043735 230 IERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVL 309 (336)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (336)
....+.+..+...++|++ ..|.+.+++..+...+|....|+|.+
T Consensus 191 --------------------------------~~~~~~~~~~~~~vw~~~----~aW~vtLfmGlqS~~~Y~~~~WLP~i 234 (395)
T COG2807 191 --------------------------------AASIATKLVSVRKVWRSP----LAWQVTLFMGLQSLLYYIVIGWLPAI 234 (395)
T ss_pred --------------------------------ccccccccccccccccCc----hhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 000011111222344444 45566667777777889999999999
Q ss_pred HHhcCCCCcHHHHHHHHHhHhhheec
Q 043735 310 FNTIGFGNDASLMSAVITGLVNACAT 335 (336)
Q Consensus 310 ~~~~G~s~~~~~~~~~~~~~~~~~~~ 335 (336)
+.+.|+|.++++...+...+..++.+
T Consensus 235 li~~G~sa~~aG~llsl~~l~~~~~~ 260 (395)
T COG2807 235 LIDRGLSAAEAGSLLSLMQLAQLPTA 260 (395)
T ss_pred HHHcCCCHHHhhhHHHHHHHHHHHHH
Confidence 99999999999998888887776543
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.2e-18 Score=156.76 Aligned_cols=257 Identities=18% Similarity=0.252 Sum_probs=184.3
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHhhhhhhh
Q 043735 72 NQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGR-LLLGFGIGFA 150 (336)
Q Consensus 72 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r-~l~g~~~~~~ 150 (336)
.++++.+.++++|+.++......+..++.+.+.||+|.|.+.+.+.++..++.++..+++++|++++.. ++.|+|.|..
T Consensus 73 ~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~ 152 (509)
T KOG2504|consen 73 MDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLI 152 (509)
T ss_pred HHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhh
Confidence 344488889999999999999999999999999999999999999999999999999999999888776 8999999999
Q ss_pred hhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCC-ChHHH
Q 043735 151 NQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPD-TPNSM 229 (336)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e-~~~~~ 229 (336)
+.....++..+|+ |+|+.++++...+.++|..+-|.+...+.+ ..|||+.+++.+.+.+..++....+++ .+...
T Consensus 153 ~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~---~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~ 228 (509)
T KOG2504|consen 153 YLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLS---KYGWRGALLIFGGISLNVLVAGALLRPLSPPKK 228 (509)
T ss_pred hcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHH---HhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCC
Confidence 9999999998775 669999999999999999999999988888 467999998887777665555544433 22110
Q ss_pred Hh-cCChHHHHHHH-------HHHcCC-CcchH-----HHHHHHHHHHhcc--ccccch----hhhccccchhHHHHHHH
Q 043735 230 IE-RGQRDEAREKL-------RKIRGV-NDVDE-----EFNDLVAASEASK--QVEHPW----GNLLKRKYRPHLTMAIL 289 (336)
Q Consensus 230 ~~-~~~~~~~~~~~-------~~~~~~-~~~~~-----~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~ 289 (336)
.. .++.+...+.. ++.... +.... +.++.++..++.. ..+... .+++++ +.++.+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~----~~fl~~~ 304 (509)
T KOG2504|consen 229 PNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKD----PKFLLLA 304 (509)
T ss_pred chhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcC----chHHHHH
Confidence 00 00000000000 000000 00000 0011111111111 011111 233333 5677777
Q ss_pred HHHHHHhhchhHHHHcHHHHHHhcCCCCcHHHHHHHHHhHhhheecC
Q 043735 290 IPFFQQLTGINVIMFYAPVLFNTIGFGNDASLMSAVITGLVNACATL 336 (336)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~~~~~~~~~~~~~~~~~~ 336 (336)
+...+...++.....++|.+.++.|++..+++.+.++.++..+++++
T Consensus 305 ~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi 351 (509)
T KOG2504|consen 305 LSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRI 351 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhh
Confidence 77777888888999999999999999999999999999999988764
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-17 Score=153.36 Aligned_cols=147 Identities=18% Similarity=0.258 Sum_probs=120.0
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhh-----chhHH-HHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKF-----GRKKS-MLFGGVLFFAGALINGFA---QGVWMLIVGRLLLGFG 146 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-----Grr~~-l~~~~~~~~i~~~~~~~~---~~~~~~~~~r~l~g~~ 146 (336)
|.|.++++.+ +.....+ ++++++|+++||+ |||+. +..+.++.+++..++++. ++++.+.+.+++.+++
T Consensus 43 g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~ 120 (491)
T PRK11010 43 NIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFC 120 (491)
T ss_pred CCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 7788888886 3333333 6899999999999 99885 667777777777777664 4678888899999999
Q ss_pred hhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCCCh
Q 043735 147 IGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTP 226 (336)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~ 226 (336)
.+...+...++..|++|+++|+++.++...+..+|..+++.+...+.+. .+|||..|++.++..++..+..++.||++
T Consensus 121 ~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~--~~GWr~~f~i~a~l~ll~~l~~~~~~e~~ 198 (491)
T PRK11010 121 SASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADR--YLGWQGMYWLMAALLIPCIIATLLAPEPT 198 (491)
T ss_pred HHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999999999999999999998888762 14799999988877666665555677764
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-17 Score=150.09 Aligned_cols=217 Identities=15% Similarity=0.121 Sum_probs=143.6
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchh----HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRK----KSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFAN 151 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr----~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~ 151 (336)
|.|.+++|++.+++.++..++++++|++.||+||| +.+.+..++. ........++++.+++.|++.|++.+...
T Consensus 35 g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~~~~~ 112 (382)
T PRK11128 35 GYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFFSPLV 112 (382)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHHcccc
Confidence 89999999999999999999999999999999984 3332222221 22233445789999999999999988888
Q ss_pred hhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCCChHHHHh
Q 043735 152 QSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIE 231 (336)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 231 (336)
+...++..++ +++|++..+......++|..++|++++++.+. +|||..|+..++..++..+..++.||.++.
T Consensus 113 ~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~---~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~--- 184 (382)
T PRK11128 113 PLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSW---FGEQAILWILTAGVASMLLGQLLRPTIMPQ--- 184 (382)
T ss_pred cHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHH---cChhHHHHHHHHHHHHHHHHHHccCCCCCc---
Confidence 8877777776 35578888888888899999999999999873 579999987665544444333444543210
Q ss_pred cCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHHH
Q 043735 232 RGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFN 311 (336)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (336)
++++ +..++...++++++|++..+. ..+..+...........+.|.+.+
T Consensus 185 -~~~~--------------------------~~~~~~~~~~~~i~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~ 233 (382)
T PRK11128 185 -GESR--------------------------QQESAGWPAWKALLKEPTVWR----FLLCVSLLQGSHAAYYGFSAIYWQ 233 (382)
T ss_pred -cccc--------------------------cccccccchHHHHHcChhHHH----HHHHHHHHHHHhHhHHHHHHHHHH
Confidence 0000 000011224555555543322 222222222223345556677778
Q ss_pred hcCCCCcHHHHHHHHHhHhhhe
Q 043735 312 TIGFGNDASLMSAVITGLVNAC 333 (336)
Q Consensus 312 ~~G~s~~~~~~~~~~~~~~~~~ 333 (336)
+.|++..+.+....+..+..++
T Consensus 234 ~~g~s~~~~g~~~~~~~~~~~~ 255 (382)
T PRK11128 234 AAGYSASTIGYLWSLGVVAEVL 255 (382)
T ss_pred HCCCCHhHHHHHHHHHHHHHHH
Confidence 8999988888877766555443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.7e-17 Score=148.42 Aligned_cols=147 Identities=17% Similarity=0.216 Sum_probs=122.3
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhh-----chhH-HHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKF-----GRKK-SMLFGGVLFFAGALINGFA---QGVWMLIVGRLLLGFG 146 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-----Grr~-~l~~~~~~~~i~~~~~~~~---~~~~~~~~~r~l~g~~ 146 (336)
|+|.+++|++..+... .+.++++|+++||+ |||| ++..+.++.+++.....+. ++++.+.+..++.+++
T Consensus 30 g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~ 107 (402)
T PRK11902 30 GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFL 107 (402)
T ss_pred CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 9999999999777765 69999999999999 8875 7888888888888777776 3577778787888888
Q ss_pred hhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCCCh
Q 043735 147 IGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTP 226 (336)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~ 226 (336)
.+...+...+++.|+.|+++|+++.++...+..+|..+++.+...+.+.. +|||..|++.++..++..+..++.||++
T Consensus 108 ~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~--~gw~~~f~i~a~~~l~~~l~~~~~~e~~ 185 (402)
T PRK11902 108 SASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRV--LGWGNTYLLMAGLMLAGALTTLWAPEPE 185 (402)
T ss_pred HHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcc--cCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 88888999999999999999999999999999999999999888887631 3799999987777665555555667654
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.2e-16 Score=141.09 Aligned_cols=150 Identities=17% Similarity=0.189 Sum_probs=111.3
Q ss_pred ccccCCCchhHHHHHHHHH-HHHHHHHHhHHhhhhhchhHHH-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhh
Q 043735 73 QYCQYNSETLTLFTSSLYL-AALLSSLVASSVTRKFGRKKSM-LFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFA 150 (336)
Q Consensus 73 ~~~~~s~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~Grr~~l-~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~ 150 (336)
+++|+|.+++|++.+...+ +..++.+++++ +||+|||+.+ ..+.++..+...+.+++++++.+++.+.+.+...+..
T Consensus 44 ~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 122 (393)
T PRK15011 44 DEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTA 122 (393)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 3448999999999776655 55666656666 9999999875 4556666677777788889988776665555555567
Q ss_pred hhhHHHHhhhcCCCccc--hhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHh-hcccCCCh
Q 043735 151 NQSVPLYLSEMAPYKYR--GALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIG-SLVLPDTP 226 (336)
Q Consensus 151 ~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~ 226 (336)
.+....+..|+.++++| +...+..+.+.++|..++|++++.+.+. .|||..|+..++..++..+. .+++||.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~---~gw~~~f~~~~~~~~~~~~~~~~~~~~~~ 198 (393)
T PRK15011 123 NPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMG---FSFTVMYLSAAVAFIVCGVMVWLFLPSMR 198 (393)
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh---cChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence 78888888888877666 3445788889999999999999999873 57999998877766555444 34577764
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-17 Score=169.57 Aligned_cols=223 Identities=14% Similarity=0.070 Sum_probs=154.7
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHH---HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHHH
Q 043735 80 ETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLF---GGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPL 156 (336)
Q Consensus 80 ~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~---~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~~ 156 (336)
...++..+++.+.+.++++++|+++||+|||+++.. ..+..++..+.....++++.++++|+++|++.+...+...+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 446888889999999999999999999999997643 22222332333334578999999999999999999999999
Q ss_pred HhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCCChHHHHhcCChH
Q 043735 157 YLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRD 236 (336)
Q Consensus 157 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 236 (336)
++.|++|+++|++++++.+++.++|.+++|.+++++... .+|++.|+...+..++..++.+++|+++... .+...
T Consensus 132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 206 (1140)
T PRK06814 132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATIS---GNFVILVALLMGIAVLGWLASLFIPKTGNAA--PDLKI 206 (1140)
T ss_pred hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHHHHHhhCCCCCCCC--CCCee
Confidence 999999999999999999999999999999999999874 4699888555555555555556676654210 00000
Q ss_pred HHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHHHh-cCC
Q 043735 237 EAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFNT-IGF 315 (336)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~ 315 (336)
. . ...++ ....++.+.+++. ++...+..+........+..+.|.++++ +|.
T Consensus 207 ~-------------~-~~~~~----------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~ 258 (1140)
T PRK06814 207 D-------------R-NIIRS----------TITLLKYAKADKR----IWLAILGISWFWLVGAVVLSQLPLLAKETLGG 258 (1140)
T ss_pred c-------------c-chHHH----------HHHHHHHHhcCch----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCC
Confidence 0 0 00000 0012333333332 2233333333333344566678888754 799
Q ss_pred CCcHHHHHHHHHhHhhheec
Q 043735 316 GNDASLMSAVITGLVNACAT 335 (336)
Q Consensus 316 s~~~~~~~~~~~~~~~~~~~ 335 (336)
+....+++.+..+++.++|.
T Consensus 259 ~~~~~g~~~~~~~~g~~ig~ 278 (1140)
T PRK06814 259 DENVATLFLAVFSVGVAVGS 278 (1140)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 99999999988888877764
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.8e-17 Score=145.32 Aligned_cols=219 Identities=13% Similarity=0.048 Sum_probs=145.7
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHH-HHHHHH-HHHHhhhhHHHHHHHHHHHhhhhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGV-LFFAGA-LINGFAQGVWMLIVGRLLLGFGIGFANQS 153 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~-~~~i~~-~~~~~~~~~~~~~~~r~l~g~~~~~~~~~ 153 (336)
|+|.++++++.++..+...++++++|+++||+|||........ ...+.. ..+..+++++.+++.|.+++.+.+...+.
T Consensus 35 g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~p~ 114 (382)
T TIGR00902 35 GLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAGAHNAWLLFIAIGLFALFFSAGMPI 114 (382)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHccchhH
Confidence 8999999999999999999999999999999998543322211 111122 23345788999999999999988888888
Q ss_pred HHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCCChHHHHhcC
Q 043735 154 VPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERG 233 (336)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 233 (336)
...+..++ +++|++..+......++|..++|++++.+.+. +|||..|.+.....++..+ .+.++++++. ++
T Consensus 115 ~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~---~g~~~~f~~~~~~~~~~~~-~~~~~~~~~~---~~ 185 (382)
T TIGR00902 115 GDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGM---FDEQNILAILTAGLAFMLI-GFLIKPTIPP---KD 185 (382)
T ss_pred HHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHH---cChhHHHHHHHHHHHHHHH-HHHcCCCCCC---Cc
Confidence 88887664 46789999999999999999999999999874 5799988766544332222 2333333210 00
Q ss_pred ChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHHHhc
Q 043735 234 QRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFNTI 313 (336)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (336)
+. + +++.++..+.++++|++ + ++...+..++..........+.|.++++.
T Consensus 186 ~~-~-------------------------~~~~~~~~~~~~~l~~~---~-~~~~l~~~~l~~~~~~~~~~~~~~~l~~~ 235 (382)
T TIGR00902 186 AI-P-------------------------EDESQGDSAFIALLKNP---M-NLRFLAAVCLIQGAHAAYYGFSAIYWQAA 235 (382)
T ss_pred cc-c-------------------------ccccccchhHHHHHcCh---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 00 0 00000011233444443 2 22233333333344556667888888889
Q ss_pred CCCCcHHHHHHHHHhHhhhe
Q 043735 314 GFGNDASLMSAVITGLVNAC 333 (336)
Q Consensus 314 G~s~~~~~~~~~~~~~~~~~ 333 (336)
|++..+.+....+..+..++
T Consensus 236 g~s~~~~g~l~~~~~~~~i~ 255 (382)
T TIGR00902 236 GISASATGLLWGIGVLAEII 255 (382)
T ss_pred CCCHhHHHHHHHHHHHHHHH
Confidence 99999999887766655544
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.9e-17 Score=164.37 Aligned_cols=229 Identities=14% Similarity=0.051 Sum_probs=151.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHhhhhhhhhhhHH
Q 043735 79 SETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALING---FAQGVWMLIVGRLLLGFGIGFANQSVP 155 (336)
Q Consensus 79 ~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~---~~~~~~~~~~~r~l~g~~~~~~~~~~~ 155 (336)
....+++.+++.++..++++++|+++||+|||++++++.++.++..++.. ..++++.++++|++.|++.+...+...
T Consensus 46 ~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 125 (1146)
T PRK08633 46 VILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKY 125 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHH
Confidence 34568999999999999999999999999999999998877666654443 356799999999999999999999999
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccC------CchhHHHHhhhHHH-HHHHHHhhcccCCChHH
Q 043735 156 LYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKG------GWGWRLSLGGAMVP-ALIITIGSLVLPDTPNS 228 (336)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~------~~~w~~~~~~~~~~-~~~~~~~~~~~~e~~~~ 228 (336)
+++.|++|+++|++++++...+..+|.++++.+++++..... ..+|++.+.+..+. .++..+..+.+||.++.
T Consensus 126 ~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1146)
T PRK08633 126 GIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAA 205 (1146)
T ss_pred hhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCC
Confidence 999999999999999999999999999999999998876410 01233333333322 33333444566776532
Q ss_pred HHhcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHH
Q 043735 229 MIERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPV 308 (336)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (336)
...+.+.+ ...... .....++.+++++..+. ..+..++..........+.|.
T Consensus 206 ~~~~~~~~--------------~~~~~~----------~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 257 (1146)
T PRK08633 206 APEVFDKK--------------KYLFPK----------LLWRNLKLLRSDRVLWL----AIIGLSYFWFISQLAQANFPA 257 (1146)
T ss_pred Cccccccc--------------ccccHH----------HHHHHHHHHhcCcHHHH----HHHHHHHHHHHHHHHHHhhHH
Confidence 11000000 000000 00112333333332222 222222222233344556666
Q ss_pred HH-HhcCCCCc-HHHHHHHHHhHhhheec
Q 043735 309 LF-NTIGFGND-ASLMSAVITGLVNACAT 335 (336)
Q Consensus 309 ~~-~~~G~s~~-~~~~~~~~~~~~~~~~~ 335 (336)
++ +.+|++.. ..+++.+..+++.++++
T Consensus 258 ~~~~~~g~s~~~~~g~~~~~~~ig~~~g~ 286 (1146)
T PRK08633 258 YAKEVLGLDNTFQVQYLLAASAIGIGIGS 286 (1146)
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 66 55899988 88888888887766653
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.4e-16 Score=134.49 Aligned_cols=247 Identities=13% Similarity=0.133 Sum_probs=185.0
Q ss_pred HHHHHhhhccccccccchhhHHhhhccchhhhcccCCCCcccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHH
Q 043735 33 GGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQANSSTNQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKS 112 (336)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~ 112 (336)
.++..|......... +|.+.+.| +++..+++.+...++.++.+++++.|++.+|+|+|+-
T Consensus 21 lFfl~G~~~~l~diL--ip~l~~~f------------------~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~g 80 (422)
T COG0738 21 LFFLWGFITCLNDIL--IPHLKEVF------------------DLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAG 80 (422)
T ss_pred HHHHHHHHhhcchhh--HHHHHHHh------------------CccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHH
Confidence 346667666655533 46665555 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHhhhhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHH
Q 043735 113 MLFGGVLFFAGALING---FAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLN 189 (336)
Q Consensus 113 l~~~~~~~~i~~~~~~---~~~~~~~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~ 189 (336)
++.++.++++++.+.. ...++..++++-++.|.|.+...+.+.+++..+.+++.-...+.+.+...++|..++|+++
T Consensus 81 i~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g 160 (422)
T COG0738 81 IVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLG 160 (422)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHH
Confidence 9999999999998774 5568899999999999999999999999999999998888999999999999999999999
Q ss_pred HHhhcccC----------------CchhHHHHhhhHHHHHHHHHhhcc--cCCChHHHHhcCChHHHHHHHHHHcCCCcc
Q 043735 190 YFFAKIKG----------------GWGWRLSLGGAMVPALIITIGSLV--LPDTPNSMIERGQRDEAREKLRKIRGVNDV 251 (336)
Q Consensus 190 ~~~~~~~~----------------~~~w~~~~~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (336)
+.+..... -..|+++|...+...++..+.... .|+.+..
T Consensus 161 ~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~----------------------- 217 (422)
T COG0738 161 SSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVA----------------------- 217 (422)
T ss_pred HHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcc-----------------------
Confidence 88775200 013777777666655544444333 2332200
Q ss_pred hHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHHHh-cCCCCcHHHHHHHHHhHh
Q 043735 252 DEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFNT-IGFGNDASLMSAVITGLV 330 (336)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~s~~~~~~~~~~~~~~ 330 (336)
+++..+++.....+++|++ .+....+..++..........|++.++.+ .|++..++....+....+
T Consensus 218 ---------~~~~~~~~~~~~~~l~~~~----~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~ 284 (422)
T COG0738 218 ---------APSLGASGSAGLSSLFQNK----HLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVG 284 (422)
T ss_pred ---------cccccccccchHHHHHhCh----HHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 0000000011334445444 34445555666666667778899999877 899999999999998888
Q ss_pred hheec
Q 043735 331 NACAT 335 (336)
Q Consensus 331 ~~~~~ 335 (336)
.++|+
T Consensus 285 ~~vGR 289 (422)
T COG0738 285 FMVGR 289 (422)
T ss_pred HHHHH
Confidence 88775
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.1e-16 Score=143.41 Aligned_cols=147 Identities=18% Similarity=0.143 Sum_probs=118.6
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhh------hhHHHHHHHHHHHhh
Q 043735 72 NQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFA------QGVWMLIVGRLLLGF 145 (336)
Q Consensus 72 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~------~~~~~~~~~r~l~g~ 145 (336)
++++|+|.++.+++.+.. ....+++++.|++.||+|||+++.++.+++.+++++++++ ++++.+.+.|++.|+
T Consensus 54 ~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~ 132 (591)
T PTZ00207 54 QARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTL 132 (591)
T ss_pred HHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 445599999999988774 3455678889999999999999999999999999999887 589999999999999
Q ss_pred hhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHH-HHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhh-cccC
Q 043735 146 GIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIA-NVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGS-LVLP 223 (336)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~-~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~ 223 (336)
+.+...+.....+.+++| ++||++.++...+.++|+.+. ++..+++.+ +|+..+++.+++.++..+.. ++++
T Consensus 133 G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~-----~~~~~fl~l~vl~~vv~ll~~~~vr 206 (591)
T PTZ00207 133 GCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD-----NTSAYFFFLMSFALVVGILAIVFMR 206 (591)
T ss_pred HHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHhhee
Confidence 999988988999999997 679999999999999999764 444444432 57777777777665554444 4444
Q ss_pred CC
Q 043735 224 DT 225 (336)
Q Consensus 224 e~ 225 (336)
+.
T Consensus 207 ~p 208 (591)
T PTZ00207 207 LP 208 (591)
T ss_pred CC
Confidence 43
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.8e-17 Score=141.05 Aligned_cols=149 Identities=21% Similarity=0.235 Sum_probs=136.1
Q ss_pred ccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhh
Q 043735 73 QYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQ 152 (336)
Q Consensus 73 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~ 152 (336)
.+.+-+.+++|++.+...+...+.+++.|.+.||+|+|-.+++|++.+..++++.++.++++.+++.|.++|+|.+...+
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~t 178 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADT 178 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHh
Confidence 34455688899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhcCCCcc-chhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCC
Q 043735 153 SVPLYLSEMAPYKY-RGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPD 224 (336)
Q Consensus 153 ~~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e 224 (336)
...++++|.+|++. |++++|+...+.++|..+||+.++.+.+.. |.+..|++.+++.++-..+.+++-|
T Consensus 179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~---Gk~aPFlVL~~v~Lld~~L~l~vi~ 248 (464)
T KOG3764|consen 179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA---GKSAPFLVLAIVLLLDGALQLLVIE 248 (464)
T ss_pred hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc---CCcCcHHHHHHHHHHHHHHHHheeC
Confidence 99999999998876 799999999999999999999999999854 5889999988888877777665533
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=3e-15 Score=138.57 Aligned_cols=138 Identities=25% Similarity=0.366 Sum_probs=113.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHHHHh
Q 043735 79 SETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYL 158 (336)
Q Consensus 79 ~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~~~~ 158 (336)
.....|+.+...++.+++.++.|.++|.+|||++++.+.++..+++++++.++|...++++..+.|++.|.... ....+
T Consensus 77 ~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~i 155 (599)
T PF06609_consen 77 SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAI 155 (599)
T ss_pred CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHH
Confidence 45668999999999999999999999999999999999999999999999999999999999999999777654 45668
Q ss_pred hhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhc
Q 043735 159 SEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSL 220 (336)
Q Consensus 159 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (336)
+|..|.|.|+....+...........++.++..+.. +.+|||.|++..+...+.++..+
T Consensus 156 sEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~---~~~WRw~~~~~~i~~~i~~vl~~ 214 (599)
T PF06609_consen 156 SELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA---HSGWRWIFYIFIIWSGIALVLIF 214 (599)
T ss_pred HHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc---CCCcchHHHHHHHHHHHHHHHHH
Confidence 999999999887776665555555566666655543 34799999988777665555443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-15 Score=137.68 Aligned_cols=145 Identities=15% Similarity=0.090 Sum_probs=108.0
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHH---Hhhh-----hHHHHHHHHHHHhhh
Q 043735 75 CQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALIN---GFAQ-----GVWMLIVGRLLLGFG 146 (336)
Q Consensus 75 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~---~~~~-----~~~~~~~~r~l~g~~ 146 (336)
+|+|..+.+++.++..++..+++++.|+++||+|||++++.+.+..+++.... .+.+ ....+.+.+++.|++
T Consensus 33 ~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 112 (396)
T TIGR00882 33 NGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFV 112 (396)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 38899999999999999999999999999999999999988776665544322 1111 233456678888888
Q ss_pred hhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcc-cCCC
Q 043735 147 IGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLV-LPDT 225 (336)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~e~ 225 (336)
.+...+....+..|..+ +++...+......++|..++|.+++.+.+ .+|+..|++.++..++..+..++ .||+
T Consensus 113 ~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~----~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 186 (396)
T TIGR00882 113 FSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFS----IDPQIVFWLGSGFALILMLLLMFAKPKA 186 (396)
T ss_pred hccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhc----cCchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 88878887777777533 34456667777788999999999887764 47999998877776665554443 3443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-15 Score=139.38 Aligned_cols=141 Identities=18% Similarity=0.263 Sum_probs=125.6
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhHHhhhh-hchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhh
Q 043735 75 CQYNSETLTLFTSSLYLAALLSSLVASSVTRK-FGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQS 153 (336)
Q Consensus 75 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~ 153 (336)
+|++..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++.+++++++.+.+.|++.|++.|...+.
T Consensus 43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~ 122 (475)
T TIGR00924 43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKAN 122 (475)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCC
Confidence 48999999999999999999999999999999 89999999999999999999998888888889999999999999999
Q ss_pred HHHHhhhcCCCcc---chhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHh
Q 043735 154 VPLYLSEMAPYKY---RGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIG 218 (336)
Q Consensus 154 ~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 218 (336)
...+++|++|+++ |+++.++++.+.++|..++|.+++.+.+ ..||++.|.+.++..++..+.
T Consensus 123 ~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~---~~g~~~~f~~~~~~~~~~~l~ 187 (475)
T TIGR00924 123 PSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAE---NYGYHVGFNLAAVGMVIGLLT 187 (475)
T ss_pred HHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHH---hcChHHHHHHHHHHHHHHHHH
Confidence 9999999998764 8889999999999999999999999887 357999998766544444333
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.2e-16 Score=143.64 Aligned_cols=134 Identities=17% Similarity=0.203 Sum_probs=119.0
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHhHHhhhh-hchhHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHhhhhhhhh
Q 043735 74 YCQYNSETLTLFTSSLYLAALLSSLVASSVTRK-FGRKKSMLFGGVLFFAGALINGFAQGVWM-LIVGRLLLGFGIGFAN 151 (336)
Q Consensus 74 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~-~~~~r~l~g~~~~~~~ 151 (336)
++|++.++.+++.+.+.....+..+++|+++|| +|||+++.++.+++.++.+.++++.+... ++++|.++|++.|...
T Consensus 44 ~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~ 123 (489)
T PRK10207 44 QLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFK 123 (489)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhcccccc
Confidence 348999999999999998888889999999999 99999999999999999999988765443 5578999999999999
Q ss_pred hhHHHHhhhcCCCcc--chhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHH
Q 043735 152 QSVPLYLSEMAPYKY--RGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMV 210 (336)
Q Consensus 152 ~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~ 210 (336)
+...+++.|.+|+++ |+++.++++.+.++|..++|.+++++.+. .|||+.|++.++
T Consensus 124 ~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~---~gw~~~F~i~~i 181 (489)
T PRK10207 124 ANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADK---FGYSVTYNLCGA 181 (489)
T ss_pred CCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHHHH
Confidence 999999999998874 47789999999999999999999999884 579999987544
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.6e-15 Score=133.45 Aligned_cols=142 Identities=18% Similarity=0.106 Sum_probs=95.4
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHH---hhhh-----HHHHHHHHHHHhhh
Q 043735 75 CQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALING---FAQG-----VWMLIVGRLLLGFG 146 (336)
Q Consensus 75 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~---~~~~-----~~~~~~~r~l~g~~ 146 (336)
+|+|..+.+++.++..++..++++++|+++||+|||++++++..+.+++..... ..+. .....+++++.|.+
T Consensus 41 ~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (420)
T PRK09528 41 NGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFG 120 (420)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 389999999999999999999999999999999999999887666555443221 1111 11112223333333
Q ss_pred hhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhccc
Q 043735 147 IGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVL 222 (336)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 222 (336)
.....+....+..+ . .++|+...+......++|..++|++++.+.+ .+|++.|+..++..++..+..+++
T Consensus 121 ~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~----~~~~~~f~~~~~~~~~~~~~~~~~ 190 (420)
T PRK09528 121 FLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFN----INPQINFWLGSGSALILLVLLFFA 190 (420)
T ss_pred hccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHh----cCchHhHHHHHHHHHHHHHHHhcc
Confidence 22222333233222 2 2346777888888889999999999998875 368889988777766555555444
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-14 Score=132.83 Aligned_cols=224 Identities=18% Similarity=0.220 Sum_probs=154.2
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHhhhhhhhh
Q 043735 77 YNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFA-----QGVWMLIVGRLLLGFGIGFAN 151 (336)
Q Consensus 77 ~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~-----~~~~~~~~~r~l~g~~~~~~~ 151 (336)
-|+..++++..+..+...+.++++|.++||++||++++.+-++..+..+..++. .+.+.+++.-++.|++.+...
T Consensus 42 ~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~ 121 (524)
T PF05977_consen 42 GSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFN 121 (524)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHH
Confidence 367788999999999999999999999999999999999988877665444332 367888999999999999999
Q ss_pred hhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCCChHHHHh
Q 043735 152 QSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIE 231 (336)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 231 (336)
|...+++.|..|+++...++++.++..++...+||.+++.+... .|-.+.|.+.++..++.++....++..++ .
T Consensus 122 PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~---~G~~~~f~inalsfl~~i~~l~~~~~~~~---~ 195 (524)
T PF05977_consen 122 PAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAF---FGAAAAFLINALSFLISILALLRWKPPPP---P 195 (524)
T ss_pred HHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHcccccc---c
Confidence 99999999999999999999999999999999999999998874 35666777666554443333333332210 0
Q ss_pred cCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHHH
Q 043735 232 RGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFN 311 (336)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (336)
+...++ . -.++. +..++-+.+++..+.......+ +.+ ....+...+|.+.+
T Consensus 196 ~~~~~e---~------------~~~~l----------~~G~ryv~~~~~l~~~l~~~~~---~~l-~~~a~~aLlPl~a~ 246 (524)
T PF05977_consen 196 SSLPRE---R------------FFSAL----------REGLRYVRSSPPLRSVLLRSFL---FNL-FASAVWALLPLFAR 246 (524)
T ss_pred cccchh---h------------hhhhH----------HHHHHHHhcchHHHHHHHHHHH---HHH-hhhHHHHhhhHHHH
Confidence 000000 0 00000 1112222222222222211111 111 12233445677774
Q ss_pred -hcCCCCcHHHHHHHHHhHhhheec
Q 043735 312 -TIGFGNDASLMSAVITGLVNACAT 335 (336)
Q Consensus 312 -~~G~s~~~~~~~~~~~~~~~~~~~ 335 (336)
.+|.++...+++.+..+++.++|.
T Consensus 247 ~~l~~~a~~yGll~a~~gvGai~Ga 271 (524)
T PF05977_consen 247 DVLGGGASGYGLLLAAFGVGAILGA 271 (524)
T ss_pred HHhCCcHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999998875
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.5e-15 Score=113.70 Aligned_cols=135 Identities=27% Similarity=0.406 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHHHHhhhcCCCcc
Q 043735 87 SSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKY 166 (336)
Q Consensus 87 ~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~~ 166 (336)
+...++..+++++.|++.||+|||+.+..+..+..++.+.....++++.+.+.+++.|++.+...+....++.|.+|+++
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 84 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE 84 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence 44567888999999999999999999999999999998888888899999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhc-ccCC
Q 043735 167 RGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSL-VLPD 224 (336)
Q Consensus 167 r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~e 224 (336)
|++..+..+....+|..+++.+.+.+.+. .+|++.+++.+...++..+..+ +.||
T Consensus 85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 85 RGVALGLMSAGIALGPLLGPPLGGVLAQF---LGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhHHHHHHHHhHHHHHHHhHHhHHHHhcc---cchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999988763 4698888877766665555443 4444
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.7e-15 Score=136.80 Aligned_cols=153 Identities=12% Similarity=0.118 Sum_probs=117.0
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHhHHhhhh----hchh-HHHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHH
Q 043735 74 YCQYNSETLTLFTSSLYLAALLSSLVASSVTRK----FGRK-KSMLFGGVLFFAGALINGFAQG------VWMLIVGRLL 142 (336)
Q Consensus 74 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr----~Grr-~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~r~l 142 (336)
++|++..++|++.++..+..++..++.|+++|| +||| +.++.+....+++.+++...++ ...+.+.+++
T Consensus 29 ~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (437)
T TIGR00792 29 VLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYIL 108 (437)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHH
Confidence 349999999999999999999999999999998 6874 4677787888888777766543 3556677788
Q ss_pred HhhhhhhhhhhHHHHhhhcC-CCccchhHHHHHHHHHHHHHHHHHHHHHHhhccc----CCchhHHHHhhhHHHHHHHHH
Q 043735 143 LGFGIGFANQSVPLYLSEMA-PYKYRGALNIGFQLSITIGILIANVLNYFFAKIK----GGWGWRLSLGGAMVPALIITI 217 (336)
Q Consensus 143 ~g~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~ 217 (336)
.+++.+.......++..|.. ++++|++..+..+.+..+|..+++.+.+.+.... ...+|++.+.+.+++.++..+
T Consensus 109 ~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~ 188 (437)
T TIGR00792 109 LGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLI 188 (437)
T ss_pred HHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHH
Confidence 88888877777778888887 5688999999988888888877776665554321 135899998887777665554
Q ss_pred hh-cccCCCh
Q 043735 218 GS-LVLPDTP 226 (336)
Q Consensus 218 ~~-~~~~e~~ 226 (336)
.. ++.+|++
T Consensus 189 ~~~~~~~e~~ 198 (437)
T TIGR00792 189 ICFFGTKERY 198 (437)
T ss_pred HHHcCCEecC
Confidence 43 5566653
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.7e-14 Score=131.94 Aligned_cols=137 Identities=16% Similarity=0.246 Sum_probs=114.8
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhHHhhhh-hchhHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHhhhhhhhhh
Q 043735 75 CQYNSETLTLFTSSLYLAALLSSLVASSVTRK-FGRKKSMLFGGVLFFAGALINGFAQ-GVWMLIVGRLLLGFGIGFANQ 152 (336)
Q Consensus 75 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~r~l~g~~~~~~~~ 152 (336)
+|++.++.+++.+.+........+++|+++|| +|||+++..+.++.+++..++++++ +.+.+.+.|++.|++.|...+
T Consensus 52 lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~ 131 (500)
T PRK09584 52 LGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKA 131 (500)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccC
Confidence 48899988888888776666667899999999 5999999999999999988888764 456677889999999998888
Q ss_pred hHHHHhhhcCCCcc--chhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHH
Q 043735 153 SVPLYLSEMAPYKY--RGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALI 214 (336)
Q Consensus 153 ~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~ 214 (336)
....++.|++|+++ |..+.++++.+.++|..++|.+.+++.+ ..|||+.|.+.++...+
T Consensus 132 ~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~---~~g~~~~F~i~~i~~~i 192 (500)
T PRK09584 132 NPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAA---KYGWSVAFALSVVGMLI 192 (500)
T ss_pred CHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHH---hhCHHHHHHHHHHHHHH
Confidence 88899999998654 4567888899999999999999999987 35799999876654333
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.8e-14 Score=136.65 Aligned_cols=141 Identities=18% Similarity=0.054 Sum_probs=121.3
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHHHHhhhc
Q 043735 82 LTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEM 161 (336)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~~~~~~~ 161 (336)
..+...+..++.+++.++.|+++||+|||++++.+.++.++++++.++.++...+++.+++.|++.++.++....+++|+
T Consensus 597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl 676 (742)
T TIGR01299 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL 676 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677789999999999999999999999999999999999888888877888888999998888889999999999
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCCCh
Q 043735 162 APYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTP 226 (336)
Q Consensus 162 ~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~ 226 (336)
+|+++|++++++.+....+|.+++|++++.+... +...++++.++..++..++.+++||+.
T Consensus 677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~----~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI----TKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999999877652 345566666666666666666779875
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.6e-13 Score=122.86 Aligned_cols=145 Identities=18% Similarity=0.177 Sum_probs=119.2
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVP 155 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~ 155 (336)
|++..+.+++.+...++..++.++.|+++||+|||+.+..+.+...+........++.+.+.+.+++.+++.+...+...
T Consensus 248 ~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~ 327 (393)
T PRK15011 248 HLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGM 327 (393)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888889888888888889999999999999999988877766665555555567777778888888888887777777
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCC
Q 043735 156 LYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPD 224 (336)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e 224 (336)
.+..|.+|+ +|+++.++++....+|..+++.+++.+.+. +||+..+++..++.++..+..++.||
T Consensus 328 ~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 328 LYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEI---WNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 888999985 589999999999999999999999998874 57999988877777776666666654
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.4e-14 Score=127.55 Aligned_cols=133 Identities=17% Similarity=0.277 Sum_probs=109.9
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhh-chhHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHhhhhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKF-GRKKSMLFGGVLFFAGALINGFAQ-GVWMLIVGRLLLGFGIGFANQS 153 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~r~l~g~~~~~~~~~ 153 (336)
|++..+.+.+.+.+.....++.+++|+++||+ |||+++.++.++..++.++++..+ +...+.++..+..++.|...+.
T Consensus 41 gls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~ 120 (493)
T PRK15462 41 KYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSN 120 (493)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhccccccc
Confidence 88999999999999999999999999999999 999999999999999887666433 2233444444555666666677
Q ss_pred HHHHhhhcCCCc--cchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHH
Q 043735 154 VPLYLSEMAPYK--YRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVP 211 (336)
Q Consensus 154 ~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~ 211 (336)
..++++|.+|++ +|..+.++.+.+.++|+.++|.+.+++.+ ..||++.|.+.++.
T Consensus 121 ~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~---~~Gw~~~F~iaaig 177 (493)
T PRK15462 121 VSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQE---EYSWAMGFGLAAVG 177 (493)
T ss_pred HHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHh---hhChHHHHHHHHHH
Confidence 788999999876 68999999999999999999999999977 35799999875543
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-13 Score=126.14 Aligned_cols=149 Identities=15% Similarity=0.202 Sum_probs=123.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHhhhhhhhhhh
Q 043735 78 NSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQ----GVWMLIVGRLLLGFGIGFANQS 153 (336)
Q Consensus 78 s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~----~~~~~~~~r~l~g~~~~~~~~~ 153 (336)
+.++.+...++..++..++.++.|+++||+|||+++..+.++.+++........ +.+.+++.+++.|++.+...+.
T Consensus 249 ~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~ 328 (418)
T TIGR00889 249 VVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNIS 328 (418)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456779999999999999999999999999999999999999988876665532 2456777899999999988888
Q ss_pred HHHHhhhcCCCccchhHHHHHH-HHHHHHHHHHHHHHHHhhcccCC---chhHHHHhhhHHHHHHHHHh-hcccCCCh
Q 043735 154 VPLYLSEMAPYKYRGALNIGFQ-LSITIGILIANVLNYFFAKIKGG---WGWRLSLGGAMVPALIITIG-SLVLPDTP 226 (336)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~l~~~~~~~~~~---~~w~~~~~~~~~~~~~~~~~-~~~~~e~~ 226 (336)
...++.|++|+++|++..++.+ ....+|..++|++++.+.+..+. +||+..|.+.+++.++..+. .++++|+.
T Consensus 329 ~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 329 GSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 8999999999999999999997 67889999999999999886543 57999888777665555444 45677663
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-13 Score=125.61 Aligned_cols=151 Identities=16% Similarity=0.221 Sum_probs=114.0
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhh----hhchhHHHHHH-HHHHHHHHHHHHhhhhHH----------------
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTR----KFGRKKSMLFG-GVLFFAGALINGFAQGVW---------------- 134 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d----r~Grr~~l~~~-~~~~~i~~~~~~~~~~~~---------------- 134 (336)
|.+....+++..+..+...+.+++.|+++| |+||||.++++ .+...++.++..++++.+
T Consensus 35 g~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i 114 (477)
T TIGR01301 35 GIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAI 114 (477)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHH
Confidence 889999999999999999999999999999 59999998875 556666666666665532
Q ss_pred -HHHHHHHHHhhhhhhhhhhHHHHhhhcCCCccc--hhHHHHHHHHHHHHHHHHHHHHHHhh--cccC----------Cc
Q 043735 135 -MLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYR--GALNIGFQLSITIGILIANVLNYFFA--KIKG----------GW 199 (336)
Q Consensus 135 -~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~l~~~~~--~~~~----------~~ 199 (336)
..+++..+..++....++...++++|..|+++| +.+.++.+...++|+.+++.+++... +..+ ..
T Consensus 115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~ 194 (477)
T TIGR01301 115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCA 194 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccc
Confidence 223333344557777888888999999998865 57899999999999999999888652 1110 02
Q ss_pred hhHHHHhhhHHHHHHHHHhh-cccCCCh
Q 043735 200 GWRLSLGGAMVPALIITIGS-LVLPDTP 226 (336)
Q Consensus 200 ~w~~~~~~~~~~~~~~~~~~-~~~~e~~ 226 (336)
+.+..|++.++..++..+.. ++.+|.|
T Consensus 195 ~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 195 NLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 57888888777665555544 5678865
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.1e-13 Score=119.95 Aligned_cols=215 Identities=9% Similarity=-0.047 Sum_probs=135.0
Q ss_pred cCCCchhHHH--HHHHHHHHHHHHHHh-HHhhhhhchhHHHHHHHHHH-HHHHHHHH---hhhh-HHHHHHHHHHHhhhh
Q 043735 76 QYNSETLTLF--TSSLYLAALLSSLVA-SSVTRKFGRKKSMLFGGVLF-FAGALING---FAQG-VWMLIVGRLLLGFGI 147 (336)
Q Consensus 76 ~~s~~~~~~~--~~~~~~~~~i~~~~~-g~l~dr~Grr~~l~~~~~~~-~i~~~~~~---~~~~-~~~~~~~r~l~g~~~ 147 (336)
|.|.+++|.+ .+...+...+.+++. ++..||+||||..++...+. +++..... ...+ ...+....++.++..
T Consensus 32 g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (390)
T TIGR02718 32 GAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLAS 111 (390)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHH
Confidence 8999999997 466677787888887 55799999998865554332 22222222 1222 333344455566666
Q ss_pred hhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCCChH
Q 043735 148 GFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPN 227 (336)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~ 227 (336)
+...+....+..|..++++++...+....+..+|..+++.+.+.+.+. .|||..|++.++..++..+..++++|+++
T Consensus 112 a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~---~gw~~~f~~~a~l~~~~~~~~~~~~~~~~ 188 (390)
T TIGR02718 112 ATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK---FGQRPAFLLVACVPLASLVCVLWLKDRAV 188 (390)
T ss_pred HHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 777777778888999888888888888888899999999888887763 57999999888776665555555544321
Q ss_pred HHHhcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHH
Q 043735 228 SMIERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAP 307 (336)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (336)
. +++.+ +++..+.++.+|++..+...... ++..........+.+
T Consensus 189 ~---~~~~~-----------------------------~~~~~~~~~~l~~~~~~~~~~~~----~l~~~~~~~~~~~~~ 232 (390)
T TIGR02718 189 A---SPEAP-----------------------------LARRASLFRFFRRPLAWSLLALA----LLSAMTAVSGFGLSK 232 (390)
T ss_pred C---ccccc-----------------------------hhhHHHHHHHHcCcCHHHHHHHH----HHHHHHHHHHHHHhh
Confidence 0 00000 00011233445544333322222 222222334445667
Q ss_pred HHHHhcCCCCcHHHHHHHHHhH
Q 043735 308 VLFNTIGFGNDASLMSAVITGL 329 (336)
Q Consensus 308 ~~~~~~G~s~~~~~~~~~~~~~ 329 (336)
.++++.|++.++.+......++
T Consensus 233 ~~l~~~G~s~~~ig~~~~~~~~ 254 (390)
T TIGR02718 233 LYLVDAGWPLEWIGRLGMAGGA 254 (390)
T ss_pred HHHHhcCCCHHHHHHHHhHHHH
Confidence 7777899999999888766543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-13 Score=126.02 Aligned_cols=144 Identities=13% Similarity=-0.024 Sum_probs=102.1
Q ss_pred ccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhch-hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhh
Q 043735 73 QYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGR-KKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFAN 151 (336)
Q Consensus 73 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Gr-r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~ 151 (336)
+++|+|.+++|++.++..++..++++++|.++||+|| |+++..+.++..+...+..+.++++.+.+.|++.|++.+...
T Consensus 31 ~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 110 (418)
T TIGR00889 31 KTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTI 110 (418)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHH
Confidence 3448999999999999999999999999999999965 778888888888888888888889999999999999877666
Q ss_pred hhHHHHhh--------hcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccC
Q 043735 152 QSVPLYLS--------EMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLP 223 (336)
Q Consensus 152 ~~~~~~~~--------~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 223 (336)
+...++.. |......|.+..+ .+|.+++|.+++.+.. ...|+. +++.++..++..+..+++|
T Consensus 111 ~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~---~~~~~~-f~~~~~~~~~~~~~~~~~~ 180 (418)
T TIGR00889 111 ALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDI---ELSNIQ-LYITAGSSALLGVFALTLP 180 (418)
T ss_pred HHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcc---cchhHH-HHHHHHHHHHHHHHHhcCC
Confidence 65554422 2222222334333 3577777777776632 123554 4444444444444556778
Q ss_pred CCh
Q 043735 224 DTP 226 (336)
Q Consensus 224 e~~ 226 (336)
|+|
T Consensus 181 e~~ 183 (418)
T TIGR00889 181 DIP 183 (418)
T ss_pred CCC
Confidence 865
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.4e-13 Score=118.30 Aligned_cols=144 Identities=19% Similarity=0.236 Sum_probs=119.3
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVP 155 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~ 155 (336)
|.+..+.+++.+.......++.++.|++.||+|||+++..+.++..+........++.+.+.+.+++.|++.+...+...
T Consensus 231 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 310 (375)
T TIGR00899 231 GLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGM 310 (375)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888887777888899999999999999999888777666665556667788888888999999888888888
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccC
Q 043735 156 LYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLP 223 (336)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 223 (336)
.++.|..|+ +|+++.++++....+|..++|.+.+.+.+. .||+..++..++..++..+...+++
T Consensus 311 ~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~ 374 (375)
T TIGR00899 311 LYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAER---WSYHAVYWFAIVMLIVALFCLLLIK 374 (375)
T ss_pred HHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccchhHHHHHHHHHHHHHHHHheec
Confidence 889998876 467999999999999999999999998874 4689888887777766666655554
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4e-13 Score=122.16 Aligned_cols=145 Identities=12% Similarity=0.088 Sum_probs=119.7
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVP 155 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~ 155 (336)
|++..+.+.+.+...++..++.++.|++.||+|||+.+..+.+...++.+.....++.+.+.+..++.|++.+...+...
T Consensus 251 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 330 (406)
T PRK11551 251 GLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLY 330 (406)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHH
Confidence 78889999999999999999999999999999999999887777777766666677777777778888988888888888
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhccc
Q 043735 156 LYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVL 222 (336)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 222 (336)
.++.|.+|+++|++..++.+....+|..++|.+.+.+.+..+ +|...++......+...+..+++
T Consensus 331 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 331 ALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGR--STVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred HHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCC--chHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887532 46666665555554444444444
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.1e-13 Score=119.59 Aligned_cols=142 Identities=18% Similarity=0.246 Sum_probs=120.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHHHHhhh
Q 043735 81 TLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSE 160 (336)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~~~~~~ 160 (336)
+.++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.+.....++.+.+++.+++.|++.+..++.....+.|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~ 329 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK 329 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34666778888899999999999999999999998888888888777777888888888999999999888888888889
Q ss_pred cCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCCC
Q 043735 161 MAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDT 225 (336)
Q Consensus 161 ~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~ 225 (336)
..|+++|+++.++++....+|..+++.+.+.+.+. .||++.+++.++..++..+..++++++
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 330 RVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW---FGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999988873 569999988777766666655555443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.1e-13 Score=120.40 Aligned_cols=137 Identities=14% Similarity=0.009 Sum_probs=116.1
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHhhhhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGV--WMLIVGRLLLGFGIGFANQS 153 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~--~~~~~~r~l~g~~~~~~~~~ 153 (336)
|.+..+.+.+.+...++..+++++.|++.||+|||+.+..+.++..++.+...+.++. ..+.+..++.|++.+...+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 315 (377)
T TIGR00890 236 GLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISL 315 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhc
Confidence 6777888999999999999999999999999999999999988888888777666532 33445677888888877778
Q ss_pred HHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHH
Q 043735 154 VPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALII 215 (336)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~ 215 (336)
...++.|.+|+++|++..++.+....+|..++|.+.+.+.+. .||++.+++.++..+++
T Consensus 316 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 316 FPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE---IGFEYTFIVTGAFALTS 374 (377)
T ss_pred cHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh---hchhhHHHHHHHHHHHh
Confidence 888999999999999999999999999999999999998873 57998888776665543
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.50 E-value=8e-13 Score=117.21 Aligned_cols=144 Identities=26% Similarity=0.356 Sum_probs=131.0
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhH-HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKK-SMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSV 154 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~-~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~ 154 (336)
|.+..+.+++.+...++..++.++.+++.||+|||+ .+..+.++..++.+.....++.+.+.+..++.|++.+...+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 286 (352)
T cd06174 207 GLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPAL 286 (352)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhH
Confidence 778899999999999999999999999999999999 9999999999999999888888889999999999999999999
Q ss_pred HHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhccc
Q 043735 155 PLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVL 222 (336)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 222 (336)
..++.|..|+++|++..++.+....+|..+++.+.+.+.+ ..+|+..+.+.+++.++..+..+++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~---~~~~~~~~~~~~~~~~i~~i~~~~~ 351 (352)
T cd06174 287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD---TGGYGGVFLILAALALLAALLLLLL 351 (352)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCcchHHHHHHHHHHHHHHHheec
Confidence 9999999999999999999999999999999999999987 3579999988888777666655443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.5e-13 Score=122.42 Aligned_cols=148 Identities=18% Similarity=0.226 Sum_probs=123.6
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVP 155 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~ 155 (336)
+.+..+.+++.++..++..++.+++|++.||+|||+.+..+.++.+++.++..+.++.+.+++.+++.|++.+...+...
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 337 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVF 337 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667789999999999999999999999999999999999999999888888888899889999999998888878888
Q ss_pred HHhhhcCCCccchhHHHH-HHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhh-cccCCCh
Q 043735 156 LYLSEMAPYKYRGALNIG-FQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGS-LVLPDTP 226 (336)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~ 226 (336)
.++.|.+|++.|+...+. ++....+|..+++.+.+++.+. .||+..|...+++.++..+.. +..++++
T Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~---~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 338 KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDS---IGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHh---hCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 899999999999877655 6778889999999999999884 479999987776655544443 3444443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.3e-12 Score=115.48 Aligned_cols=150 Identities=15% Similarity=0.133 Sum_probs=109.6
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHh---h-hhHHHHHHHHHHHhhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGF---A-QGVWMLIVGRLLLGFGIGFAN 151 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~---~-~~~~~~~~~r~l~g~~~~~~~ 151 (336)
|++.+....+.....+...++.++.|+++||+|||+++..+.++..++.+.... . ++.+.+++..++.+++.+...
T Consensus 282 g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 361 (438)
T PRK09952 282 GLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVV 361 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence 666665555566666777888999999999999999988887766555433322 1 234444555677788888888
Q ss_pred hhHHHHhhhcCCCccchhHHHH-HHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCCCh
Q 043735 152 QSVPLYLSEMAPYKYRGALNIG-FQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTP 226 (336)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~ 226 (336)
+..+.++.|.+|++.|+.+.++ ++.+..+|+.++|.+.+++.+..+ .+|+..+.+.++..++..+..+.++|++
T Consensus 362 ~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~-~~~~~~~~~~~~~~~i~~v~~~~~~~~~ 436 (438)
T PRK09952 362 CVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG-GSWHSVAIYLLAGCLISAMTALLMKDNQ 436 (438)
T ss_pred HHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHccccc
Confidence 8889999999999999888887 445566899999999999877432 2588777777776666666666666643
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.8e-13 Score=125.69 Aligned_cols=251 Identities=16% Similarity=0.185 Sum_probs=182.9
Q ss_pred CCCcccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhh------------------
Q 043735 69 SSTNQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFA------------------ 130 (336)
Q Consensus 69 ~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~------------------ 130 (336)
+.+++.|+++.++.|++.+.+-++..+...+..+..-|.-|-+++-++.++++++++++++-
T Consensus 121 ttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~ 200 (735)
T KOG3626|consen 121 TTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSV 200 (735)
T ss_pred hhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccc
Confidence 44577779999999999999999999999999999999999999999999999999887651
Q ss_pred --h---------------------------h----H-HHHHHHHHHHhhhhhhhhhhHHHHhhhcCCCccchhHHHHHHH
Q 043735 131 --Q---------------------------G----V-WMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQL 176 (336)
Q Consensus 131 --~---------------------------~----~-~~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 176 (336)
+ + . ..++++.++.|+|..+.++...+|+=|...+++-....++...
T Consensus 201 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~ 280 (735)
T KOG3626|consen 201 ENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYS 280 (735)
T ss_pred cCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHH
Confidence 0 0 1 2567788999999999999999999999999988999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccCCc----------------hhHHHHhhhHHHHHHHHHhhcccCCChHHHHhcCChHHHHH
Q 043735 177 SITIGILIANVLNYFFAKIKGGW----------------GWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEARE 240 (336)
Q Consensus 177 ~~~~g~~~~~~l~~~~~~~~~~~----------------~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 240 (336)
...+|.++|-+++++..+...++ .|+.-|++.+.+.++..+..+++|...+....+ ...+
T Consensus 281 ~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~----~~~~ 356 (735)
T KOG3626|consen 281 MAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKR----KRAR 356 (735)
T ss_pred HHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCcccccc----chhh
Confidence 99999999999999887643221 366677777777777777778887664321111 0000
Q ss_pred HHHHHcCCCcchHHHHHHHHHHHhccccccc---hhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHHH-hcCCC
Q 043735 241 KLRKIRGVNDVDEEFNDLVAASEASKQVEHP---WGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFN-TIGFG 316 (336)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~s 316 (336)
..+..+.+++ ..+.......+ +...+++...++++....+...+....+.++..|+|.|++ ++|.+
T Consensus 357 ~~~~~k~~~~----------~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~s 426 (735)
T KOG3626|consen 357 DLHVLKTESG----------GAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGIS 426 (735)
T ss_pred hhcccccccc----------cccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCC
Confidence 0000000000 00000000111 2222334455567888888888888889999999999995 68999
Q ss_pred CcHHHHHHHHHhHhhhe
Q 043735 317 NDASLMSAVITGLVNAC 333 (336)
Q Consensus 317 ~~~~~~~~~~~~~~~~~ 333 (336)
+..+..++...++..+.
T Consensus 427 as~An~l~G~i~vp~~~ 443 (735)
T KOG3626|consen 427 ASLANILTGSIGVPAAA 443 (735)
T ss_pred HHHHHHHhhhhhhhhhh
Confidence 99999888777666543
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.7e-12 Score=114.73 Aligned_cols=144 Identities=15% Similarity=0.056 Sum_probs=116.7
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVP 155 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~ 155 (336)
|+|..+.+.+.+.+.++..++.+..|+++||+|||+++.....+..+...+....++.+.+.+..++.|++.+..++...
T Consensus 237 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 316 (394)
T PRK03699 237 GMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTII 316 (394)
T ss_pred CCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999888777777666666667776677778888998888888878
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccC
Q 043735 156 LYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLP 223 (336)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 223 (336)
.+..|..|. ++++..+.......+|..++|.+.+.+.+. .|++..++..+++.+++.+.....+
T Consensus 317 ~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (394)
T PRK03699 317 TLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAH---FGLQAALLTANGLYAVVFVMCILLG 380 (394)
T ss_pred HHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHH---hCchhhhhhhHHHHHHHHHHHHHHH
Confidence 888887764 467788888888899999999999999884 4688888776666555554444433
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.2e-12 Score=117.62 Aligned_cols=146 Identities=15% Similarity=0.047 Sum_probs=108.0
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHhhhhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALI--NGFAQGVWMLIVGRLLLGFGIGFANQS 153 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~--~~~~~~~~~~~~~r~l~g~~~~~~~~~ 153 (336)
|+|..+.++..+...++..++.+++|+++||+|||+.+.....+..++... ....++.....+.+++.|++.......
T Consensus 290 g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 369 (467)
T PRK09556 290 GFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLL 369 (467)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHH
Confidence 889999999999999999999999999999999998776654444433322 223345556667788888654333333
Q ss_pred HHHHhhhcCCCccchhHHHHHHHHHHH-HHHHHHHHHHHhhcc---------cCCchhHHHHhhhHHHHHHHHHhhcc
Q 043735 154 VPLYLSEMAPYKYRGALNIGFQLSITI-GILIANVLNYFFAKI---------KGGWGWRLSLGGAMVPALIITIGSLV 221 (336)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~~~~~---------~~~~~w~~~~~~~~~~~~~~~~~~~~ 221 (336)
....+.|.+|++.||.+.++.+....+ |..++|.+.+.+.+. ....+|+..|.+..+..++..+..++
T Consensus 370 ~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 370 IGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 345677999999999999999988886 778999999999881 00246999998776666655554443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.5e-12 Score=113.30 Aligned_cols=136 Identities=17% Similarity=0.223 Sum_probs=117.0
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHHHHhhhc
Q 043735 82 LTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEM 161 (336)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~~~~~~~ 161 (336)
.++..+...++..+++++.|++.||+|||+.+..+..+..++.++..+.++.+.+.+..++.|++.+...+.....+.|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 330 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR 330 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 45666677788899999999999999999999999888888888777778888888889999999988888888889999
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhc
Q 043735 162 APYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSL 220 (336)
Q Consensus 162 ~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (336)
+|+++||+..++++....+|..++|.+.+.+.+. .||+..+.+.+...++..+..+
T Consensus 331 ~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 331 VPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATS---FGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999874 4699999887777666555443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-12 Score=119.56 Aligned_cols=140 Identities=9% Similarity=0.018 Sum_probs=113.2
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhh--chhHHHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKF--GRKKSMLF--GGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFAN 151 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--Grr~~l~~--~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~ 151 (336)
|++..+.+++.++..++..+++++.|+++||. ++|+...+ +.++.+++.+++...++++.+++.+++.|++.+...
T Consensus 272 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~ 351 (455)
T TIGR00892 272 GVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVG 351 (455)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHH
Confidence 88889999999999999999999999999973 34443333 333334445555667788888889999999999988
Q ss_pred hhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHH
Q 043735 152 QSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITI 217 (336)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 217 (336)
+....++.|.+|+++|++..++++....+|..++|.+.+.+.+..+ +|++.|++.++..++..+
T Consensus 352 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g--~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 352 ALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK--NYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcC--CcchHHHHhhHHHHHHHH
Confidence 9999999999999999999999999999999999999998887432 588888877666554443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.9e-11 Score=108.86 Aligned_cols=194 Identities=14% Similarity=0.169 Sum_probs=138.3
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHhhhccccccccchhhHHhhhccchhhhcccCCCCcccccCCCchhHHHHHHHH
Q 043735 11 NGKGYPGKLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQANSSTNQYCQYNSETLTLFTSSLY 90 (336)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 90 (336)
.++.+.++.+|+...+..+.+ ++.+....++.+. +-.|.++. |.+.+.+..|++.++..
T Consensus 23 ~~~~~~~~t~wrsi~l~~~~s---fl~~v~~sI~~~s--~wpYl~~l----------------D~~A~~~ffG~viaa~s 81 (488)
T KOG2325|consen 23 LSPLDERKTNWRSIYLALLNS---FLVAVQFSIYLTS--MWPYLQKL----------------DPTATATFFGLVIAASS 81 (488)
T ss_pred cccccccCCchHhHHHHHHHH---HHHhhhheEEEee--cchhhhhc----------------CCCCCcchhhHHHHHHH
Confidence 344566677787766666655 4444444444333 23444442 12667888999999999
Q ss_pred HHHHHHHHHhHHhhhhhch-hHHHHHHHHHHHHHHHHHH-h---hh-hHHHHHHHHHHHhhhhhhhhhhHHHHhhhcCCC
Q 043735 91 LAALLSSLVASSVTRKFGR-KKSMLFGGVLFFAGALING-F---AQ-GVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPY 164 (336)
Q Consensus 91 ~~~~i~~~~~g~l~dr~Gr-r~~l~~~~~~~~i~~~~~~-~---~~-~~~~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~ 164 (336)
++.+++++.+|+...|.+. |+.++.+.++..+++++.. . .+ ..+.++++|++.|+|.|. ....-.|+++-...
T Consensus 82 lg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~ 160 (488)
T KOG2325|consen 82 LGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTV 160 (488)
T ss_pred HHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCc
Confidence 9999999999999999986 7778889999999998873 3 22 567889999999998765 46667899998888
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhcccC-C------c---hhHHHHhhhHHHHHHHHHhh-cccCCCh
Q 043735 165 KYRGALNIGFQLSITIGILIANVLNYFFAKIKG-G------W---GWRLSLGGAMVPALIITIGS-LVLPDTP 226 (336)
Q Consensus 165 ~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~-~------~---~w~~~~~~~~~~~~~~~~~~-~~~~e~~ 226 (336)
++|.++.+....+..+|..+||.+...+..... + . .+..+-|+.++..++.++.. ++++|.+
T Consensus 161 ~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~ 233 (488)
T KOG2325|consen 161 EDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVY 233 (488)
T ss_pred cchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecc
Confidence 999999999999899999999988877765432 0 0 12233445555555444443 4566665
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.1e-12 Score=110.01 Aligned_cols=268 Identities=12% Similarity=0.108 Sum_probs=175.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhhccccccccchhhHHhhhccchhhhcccCCCCcccccCCCchhHHHHHHHHHHHHHH
Q 043735 17 GKLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQANSSTNQYCQYNSETLTLFTSSLYLAALLS 96 (336)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~ 96 (336)
.|..+++|+...+.++..+..+.....++.. ..+.+.| +| +.+..-|+..++.+.+...
T Consensus 37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i---~n~~~~~-----------------Yg-s~~~~~wlsmIym~v~vp~ 95 (480)
T KOG2563|consen 37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPI---NNYVNSF-----------------YG-SSSAADWLSMIYMVVSVPF 95 (480)
T ss_pred cccchhHhHHHHHHHHHHhcCcchheeehhH---HHHHHHH-----------------hc-chHHHHHHHHHHHHHHHHH
Confidence 3566678888777777667666655444433 2333333 36 6777889999999999999
Q ss_pred HHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhh------hHH--HHHHHHHHHhhhhhhhhhhHHHHhhhcCCCccch
Q 043735 97 SLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQ------GVW--MLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRG 168 (336)
Q Consensus 97 ~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~------~~~--~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~~r~ 168 (336)
.+++-|+.||+|-|..++++..+.+++..+-..+. .++ ....+..+.+...-........+..-||++++|.
T Consensus 96 gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra 175 (480)
T KOG2563|consen 96 GFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRA 175 (480)
T ss_pred hhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhh
Confidence 99999999999999999999999999997776542 334 5667778888777666666677888999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccc---CCchhHH--HHhhhHHHHHHHH-HhhcccCCChHHHHhcCChHHHHHHH
Q 043735 169 ALNIGFQLSITIGILIANVLNYFFAKIK---GGWGWRL--SLGGAMVPALIIT-IGSLVLPDTPNSMIERGQRDEAREKL 242 (336)
Q Consensus 169 ~~~~~~~~~~~~g~~~~~~l~~~~~~~~---~~~~w~~--~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~ 242 (336)
.+..+-.++..+|..++.++...+.... .+..|.. .++...+++.+.+ +..+..++.|+... ..++
T Consensus 176 ~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPp-----s~s~--- 247 (480)
T KOG2563|consen 176 IATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPP-----SASQ--- 247 (480)
T ss_pred hhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-----chhH---
Confidence 9999999999999999988888877654 1234543 3443333333222 22233444332100 0000
Q ss_pred HHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHHHhcCCCCcHHHH
Q 043735 243 RKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFNTIGFGNDASLM 322 (336)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~~~~ 322 (336)
....+.+...+.++.++.+ .+....+.+......++...+.+...+.-.|++...+++
T Consensus 248 ------------------~~~~~~~f~~si~~~~~n~----~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ 305 (480)
T KOG2563|consen 248 ------------------AALQDASFPKSIKSCFKNR----QFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGY 305 (480)
T ss_pred ------------------hhhhcCcHHHHHHHHHcCc----cHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccch
Confidence 0000111222333444433 455555566666666666666665555566888788888
Q ss_pred HHHHHhHhhheec
Q 043735 323 SAVITGLVNACAT 335 (336)
Q Consensus 323 ~~~~~~~~~~~~~ 335 (336)
.....-+.+++++
T Consensus 306 ig~l~iv~Gmlga 318 (480)
T KOG2563|consen 306 IGALMIVAGMLGA 318 (480)
T ss_pred hHHHHHHHHHHHH
Confidence 7777777666653
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.4e-12 Score=117.18 Aligned_cols=147 Identities=12% Similarity=-0.061 Sum_probs=110.0
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhc-----hhHHHHHHHHHHH-HHHHHHHhhhhHHH-HHHHHHHHhhhh
Q 043735 75 CQYNSETLTLFTSSLYLAALLSSLVASSVTRKFG-----RKKSMLFGGVLFF-AGALINGFAQGVWM-LIVGRLLLGFGI 147 (336)
Q Consensus 75 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G-----rr~~l~~~~~~~~-i~~~~~~~~~~~~~-~~~~r~l~g~~~ 147 (336)
+|+|.++++...++..+...+-.+ +|+++||++ ||+.++++.++.+ ++....+..++... ..+..++.+++.
T Consensus 56 lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 134 (468)
T TIGR00788 56 LGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAK 134 (468)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 499999999999999999999666 999999998 7888888877763 44333343344333 344788999999
Q ss_pred hhhhhhHHHHhhhcCCCccchhHHH---HHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCC
Q 043735 148 GFANQSVPLYLSEMAPYKYRGALNI---GFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPD 224 (336)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e 224 (336)
+........+..|..+ +++....+ .......+|..+++.+++.+.+. .+|+..|++.+...++..+..++++|
T Consensus 135 a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~---~~~~~~f~~~a~l~ll~~~~~~~~~E 210 (468)
T TIGR00788 135 ALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDK---TLTRILFLITAALLLLQLFVSNLSKE 210 (468)
T ss_pred HHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh---cCcchHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999998 54444332 33333457999999999988873 57999998877776666555567788
Q ss_pred Ch
Q 043735 225 TP 226 (336)
Q Consensus 225 ~~ 226 (336)
++
T Consensus 211 ~~ 212 (468)
T TIGR00788 211 RR 212 (468)
T ss_pred cc
Confidence 63
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-11 Score=110.76 Aligned_cols=138 Identities=12% Similarity=0.041 Sum_probs=120.9
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVP 155 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~ 155 (336)
|.+..+.+.+.+...++..++.++.+++.||+|+|+.+.++.++..+.....++.++.+.+++.+++.|++.+...+...
T Consensus 236 g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~ 315 (382)
T TIGR00902 236 GISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAM 315 (382)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCccchhHHHHHH-HHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHh
Q 043735 156 LYLSEMAPYKYRGALNIGFQ-LSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIG 218 (336)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 218 (336)
.++.+. |+++|+...++++ ...++|..+++.+++.+.+.. |+ ..|...+.+++...+.
T Consensus 316 ~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~---g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 316 RYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL---GA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cH-HHHHHHHHHHHHHHHH
Confidence 999998 9999999999876 567899999999999999853 45 4455555555544443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.1e-11 Score=110.43 Aligned_cols=147 Identities=16% Similarity=0.062 Sum_probs=111.2
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHhhhhhhhhhhH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQ-GVWMLIVGRLLLGFGIGFANQSV 154 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~r~l~g~~~~~~~~~~ 154 (336)
|.+..+.+...+.+.++..++.++.|++.||+|||+.+..+..+..++..+....+ +...+ ..++.|++.+...+..
T Consensus 236 g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~~ 313 (393)
T PRK09705 236 GASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPLC 313 (393)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHHHH
Confidence 88899999999999999999999999999999999999888877777765544323 22222 2345677777777777
Q ss_pred HHHhhhcCC-CccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHh-hcccCCCh
Q 043735 155 PLYLSEMAP-YKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIG-SLVLPDTP 226 (336)
Q Consensus 155 ~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~ 226 (336)
.....+..+ +++|++..+..+....++..++|.+.+++.+..+ +|...+.+..+..++..+. ..+.||++
T Consensus 314 ~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 314 LLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG--NYLMDWAFHALCVVGLMIITLRFAPARF 385 (393)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHHHHHhccccc
Confidence 766677775 5778999999999999999999999999998654 3666666555554444443 35667765
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-11 Score=112.66 Aligned_cols=148 Identities=17% Similarity=0.090 Sum_probs=123.0
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVP 155 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~ 155 (336)
|.+..+.+++.+...++..++.++.+++.||.++++.+..+.++.+++.+...+.++.+...++.++.|++.+...+...
T Consensus 255 g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 334 (417)
T PRK10489 255 QMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQY 334 (417)
T ss_pred CCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888999999999999999999999999998888888888888888877777788887778888899998888777878
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHH-HHHhhcccCCCh
Q 043735 156 LYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALI-ITIGSLVLPDTP 226 (336)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~e~~ 226 (336)
.++.|..|++.||++.++++....+|..+++.+.+.+.+. .|++..+...++..++ ..+....+++.+
T Consensus 335 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (417)
T PRK10489 335 TLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAM---MTPVASASASGFGLLIIGVLLLLVLGELR 403 (417)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH---hchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 8999999999999999999999999999999999999884 4566677655555443 344445566654
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-12 Score=120.37 Aligned_cols=132 Identities=13% Similarity=-0.008 Sum_probs=102.7
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHhhhhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFA--QGVWMLIVGRLLLGFGIGFANQS 153 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~--~~~~~~~~~r~l~g~~~~~~~~~ 153 (336)
|++..+.+++.+...++..++.++.|+++||+|||+++..+.++..+..+..... .+.+.+.+..++.+.......+.
T Consensus 307 g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (496)
T PRK03893 307 GYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGL 386 (496)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchh
Confidence 8899999999999999999999999999999999999888877666655443332 33344444455544433334566
Q ss_pred HHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHH
Q 043735 154 VPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMV 210 (336)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~ 210 (336)
...++.|.+|+++|++.+++.+....+|..++|.+.+.+.+. +||+..+...+.
T Consensus 387 ~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~---~g~~~~~~~~~~ 440 (496)
T PRK03893 387 LPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQR---LDLGTALASLSF 440 (496)
T ss_pred hHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhcc---CChHHHHHHHHH
Confidence 677889999999999999999999999999999999999874 467776654443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.6e-11 Score=110.76 Aligned_cols=139 Identities=14% Similarity=0.111 Sum_probs=111.9
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVP 155 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~ 155 (336)
|.+.++.+++.+...++..+++++.|++.||+|||+++..+..+..++.+... + ........++.|++.....|...
T Consensus 231 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p~~~ 307 (381)
T PRK03633 231 GMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYPVAM 307 (381)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHHHHH
Confidence 77888889999999999999999999999999999999888887777665443 2 22334566777887777788888
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhc
Q 043735 156 LYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSL 220 (336)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (336)
..+.|..|+++++...+.++...++|..++|.+++.+.+. .+|++.|.+.+...++..+..+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~---~g~~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 308 AWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQN---YSDNLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCccHHHHHHHHHHHHHHHHHH
Confidence 8899999988888888888888999999999999999884 4688888877666655544433
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.3e-14 Score=132.15 Aligned_cols=255 Identities=16% Similarity=0.195 Sum_probs=3.0
Q ss_pred CCCcccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhh-----------------
Q 043735 69 SSTNQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQ----------------- 131 (336)
Q Consensus 69 ~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~----------------- 131 (336)
+.+++.|+++.++.|++.+.+-++..+..++..++.+|..|-|++-++.++.+++++++++-+
T Consensus 27 ttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~ 106 (539)
T PF03137_consen 27 TTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGN 106 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccc
Confidence 445777799999999999999999999999999999998888999999999999987775310
Q ss_pred ---------------------------------hHHHHHHHHHHHhhhhhhhhhhHHHHhhhcCCCccchhHHHHHHHHH
Q 043735 132 ---------------------------------GVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSI 178 (336)
Q Consensus 132 ---------------------------------~~~~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 178 (336)
-+..++++.++.|+|....+++..+|+=|..++++-+...+++....
T Consensus 107 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~ 186 (539)
T PF03137_consen 107 SSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMS 186 (539)
T ss_dssp ---------------------------------------------SSS--------------------------------
T ss_pred cccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHh
Confidence 02567888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccC---------------Cc----hhHHHHhhhHHHHHHHHHhhcccCCChHHHHhcCChHHHH
Q 043735 179 TIGILIANVLNYFFAKIKG---------------GW----GWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEAR 239 (336)
Q Consensus 179 ~~g~~~~~~l~~~~~~~~~---------------~~----~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 239 (336)
.+|.++|-++++...+... +. .|...|++.+...++..+..+++|+.-+...+..+.++.
T Consensus 187 ~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~~~~~~~~~- 265 (539)
T PF03137_consen 187 ILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTSERQEEKES- 265 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccccchhhh-
Confidence 9999999888887764321 01 255556666666666666666666553211000000000
Q ss_pred HHHHHHcCCCcchHHHHHHHHHHHhccccccchhh---hccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHHH-hcCC
Q 043735 240 EKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGN---LLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFN-TIGF 315 (336)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~ 315 (336)
++.+.++..+++.+ +.+..+......++ .+++...++.+....+..........++..|.|.|++ ++|.
T Consensus 266 ---~~~~~~~~~~~~~~----~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~ 338 (539)
T PF03137_consen 266 ---SERKEEDSDKDSFK----DPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGL 338 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---hhcchhhhhhhccc----ccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 00000000000000 00000001122222 2345556667888888888888888899999999995 6899
Q ss_pred CCcHHHHHHHHHhHhh
Q 043735 316 GNDASLMSAVITGLVN 331 (336)
Q Consensus 316 s~~~~~~~~~~~~~~~ 331 (336)
++.+++++..+..+.+
T Consensus 339 sas~A~~l~G~v~ip~ 354 (539)
T PF03137_consen 339 SASQASLLTGIVSIPG 354 (539)
T ss_dssp ----------------
T ss_pred CHHHHHHHHhhhhcch
Confidence 9999888776655533
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-11 Score=110.20 Aligned_cols=140 Identities=17% Similarity=0.115 Sum_probs=111.4
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHhhhhhhhhhhH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGA-LINGFAQGVWMLIVGRLLLGFGIGFANQSV 154 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~-~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~ 154 (336)
|.|..+.+++.+...++..+++++.|++.||+|||++.. +..+..++. ......++.+.+++..++.|++.+...+..
T Consensus 237 g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 315 (390)
T PRK03545 237 GLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAM 315 (390)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHH
Confidence 788889999999999999999999999999999887544 444444443 333455677778888889999877766767
Q ss_pred HHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhc
Q 043735 155 PLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSL 220 (336)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (336)
...+.|..| ++|+++.+.++....+|..+||++.+.+.+. .|++..++..+.+.++..+...
T Consensus 316 ~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~---~g~~~~~~~~~~~~~~~~~~~~ 377 (390)
T PRK03545 316 QVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLH---LGLSSIGYVGAALALAALVWSI 377 (390)
T ss_pred HHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChhHHHHHHHHHHHHHHHHHH
Confidence 778888876 5789999999999999999999999999874 5799899887777666555443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.5e-11 Score=112.82 Aligned_cols=151 Identities=17% Similarity=0.080 Sum_probs=108.5
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhh--h-HH-HHHHHHHHHhhhhhh-h
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQ--G-VW-MLIVGRLLLGFGIGF-A 150 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~--~-~~-~~~~~r~l~g~~~~~-~ 150 (336)
|.+.....+......++..++.++.|+++||+|||++++.+.++.+++.++..... + .+ ......++.+.+.+. .
T Consensus 302 g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (479)
T PRK10077 302 GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSW 381 (479)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccc
Confidence 77777777777788888999999999999999999999999999888887665431 1 11 222233444444433 2
Q ss_pred hhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhc---ccCCchhHHHHhhhHHHHHHHHHhh-cccCCCh
Q 043735 151 NQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAK---IKGGWGWRLSLGGAMVPALIITIGS-LVLPDTP 226 (336)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~---~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~ 226 (336)
.+....++.|.+|+++|+.+.++.+....+|..+++.+.+.+.+ ..+..+|++.|++.++..++..+.. ++.||++
T Consensus 382 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 382 GPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 461 (479)
T ss_pred cchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCC
Confidence 36678999999999999999999999999999888766655441 1113567777877666655555544 4567764
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.4e-11 Score=109.42 Aligned_cols=221 Identities=17% Similarity=0.177 Sum_probs=131.4
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhc-hhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFG-RKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSV 154 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G-rr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~ 154 (336)
|+|.+|+|.+.+...+...++++++|.++||.+ +|+++.+..++.++........++++.+.+..++..+...+..|..
T Consensus 33 G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~ 112 (400)
T PF03825_consen 33 GFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLS 112 (400)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHH
Confidence 899999999999999999999999999999986 5777777777777777777778888888888888888888888888
Q ss_pred HHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHH-HHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCCChHHHHhcC
Q 043735 155 PLYLSEMAPYKYRGALNIGFQLSITIGILIANVL-NYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERG 233 (336)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 233 (336)
.++..+...++ +.-.+-.-..+++|-.++... ...+....+..+....+++.+...++.....+.+|+.|+....++
T Consensus 113 dsi~~~~~~~~--~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~~~~~~ 190 (400)
T PF03825_consen 113 DSIALSYLGDR--GKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPKTPPKRSAKE 190 (400)
T ss_pred HHHHHHHcccc--cCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCCCccccccCC
Confidence 88888877532 233333333444444443322 111221111012223444444444444444566787652100000
Q ss_pred ChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHHHhc
Q 043735 234 QRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFNTI 313 (336)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (336)
+.++....+..+++|++. .. .+.+..+...........|.+.++++.
T Consensus 191 -----------------------------~~~~~~~~~~~~llk~~~---~~-~Fll~~~l~~~~~~~~~~f~~~yl~~~ 237 (400)
T PF03825_consen 191 -----------------------------SVKKLLGLDALKLLKNPR---FL-VFLLAAFLIGISHAAYYTFFSIYLQEL 237 (400)
T ss_pred -----------------------------CcccccchHHHHHhcCcc---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 000000111223444442 22 233333333334455677888889988
Q ss_pred C-CCCcHHHHHHHHHhHhh
Q 043735 314 G-FGNDASLMSAVITGLVN 331 (336)
Q Consensus 314 G-~s~~~~~~~~~~~~~~~ 331 (336)
| ++....+...++..+..
T Consensus 238 gg~~~~~~g~~~~l~~~aE 256 (400)
T PF03825_consen 238 GGYSGSTIGILWALGVVAE 256 (400)
T ss_pred ccchhhHHHHHHHHHHHHH
Confidence 7 77777776655544433
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.6e-12 Score=118.21 Aligned_cols=151 Identities=11% Similarity=0.077 Sum_probs=105.6
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhHHhhh----hhch-hHHHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHH
Q 043735 75 CQYNSETLTLFTSSLYLAALLSSLVASSVTR----KFGR-KKSMLFGGVLFFAGALINGFAQG------VWMLIVGRLLL 143 (336)
Q Consensus 75 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d----r~Gr-r~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~r~l~ 143 (336)
+|++...+|.+..+.-+.-++..++.|.++| |+|| |+.++++.+..+++.+++...++ +..+.+...+.
T Consensus 37 ~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~ 116 (473)
T PRK10429 37 VGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILW 116 (473)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHH
Confidence 3899999999999999999999999999999 6699 56677787777777655543321 23445555667
Q ss_pred hhhhhhhhhhHHHHhhhcC-CCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccC----CchhHHHHhhhHHHHHHHHHh
Q 043735 144 GFGIGFANQSVPLYLSEMA-PYKYRGALNIGFQLSITIGILIANVLNYFFAKIKG----GWGWRLSLGGAMVPALIITIG 218 (336)
Q Consensus 144 g~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~----~~~w~~~~~~~~~~~~~~~~~ 218 (336)
+++.........++..|+. ++++|.+..+.-....++|+.+.+.+...+.+..+ ..+|+...++.+++.++..+.
T Consensus 117 ~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~ 196 (473)
T PRK10429 117 GMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTII 196 (473)
T ss_pred HHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 7777777888888999998 68999998888667777776665554443322111 235777666666655544433
Q ss_pred h-cccCCC
Q 043735 219 S-LVLPDT 225 (336)
Q Consensus 219 ~-~~~~e~ 225 (336)
. +..+|.
T Consensus 197 ~~~~~~e~ 204 (473)
T PRK10429 197 TLRNVHEV 204 (473)
T ss_pred HHcCceec
Confidence 3 345664
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.3e-12 Score=112.29 Aligned_cols=134 Identities=14% Similarity=0.096 Sum_probs=104.8
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHH--HHHHh--hhhHHHHHHHHHHHhhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGA--LINGF--AQGVWMLIVGRLLLGFGIGFAN 151 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~--~~~~~--~~~~~~~~~~r~l~g~~~~~~~ 151 (336)
|.+..+.+.+.+...++..++.++.|+++||+|||+.+.....+..+.. +.... .++.+.+.+..++.|++.+...
T Consensus 251 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 330 (394)
T TIGR00883 251 GLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYT 330 (394)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh
Confidence 7788889999999999999999999999999999998776555444433 12222 2456666777888899888888
Q ss_pred hhHHHHhhhcCCCccchhHHHH-HHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHH
Q 043735 152 QSVPLYLSEMAPYKYRGALNIG-FQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVP 211 (336)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~ 211 (336)
+....++.|.+|+++|+++.++ ++.+..+|..++|.+.+.+.+..+ .|+..++...+.
T Consensus 331 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g--~~~~~~~~~~~~ 389 (394)
T TIGR00883 331 GPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG--DWYAIGYYLAAL 389 (394)
T ss_pred hhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC--cchhHHHHHHHH
Confidence 9999999999999999999887 566677888899999999988543 266665544443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.6e-12 Score=116.63 Aligned_cols=150 Identities=12% Similarity=0.094 Sum_probs=107.5
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhHHhhhh----hchh-HHHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHH
Q 043735 75 CQYNSETLTLFTSSLYLAALLSSLVASSVTRK----FGRK-KSMLFGGVLFFAGALINGFAQG------VWMLIVGRLLL 143 (336)
Q Consensus 75 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr----~Grr-~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~r~l~ 143 (336)
+|+|..++|.+.++.-+..++..++.|+++|| +||| +.++++.+..+++.++....++ ...+++..++.
T Consensus 40 ~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~ 119 (444)
T PRK09669 40 FGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILL 119 (444)
T ss_pred cCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 49999999999999999999999999999998 7874 5566677777777655544432 34555566666
Q ss_pred hhhhhhhhhhHHHHhhhcC-CCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccC----CchhHHHHhhhHHHHHHHHHh
Q 043735 144 GFGIGFANQSVPLYLSEMA-PYKYRGALNIGFQLSITIGILIANVLNYFFAKIKG----GWGWRLSLGGAMVPALIITIG 218 (336)
Q Consensus 144 g~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~----~~~w~~~~~~~~~~~~~~~~~ 218 (336)
+.+.........++.+|+. ++++|.+..+.-..+..+|..+++.+...+....+ ..+|+..+++.+++.++..+.
T Consensus 120 ~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~ 199 (444)
T PRK09669 120 SLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFC 199 (444)
T ss_pred HHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 7766666777778999987 56889988888888888887777765544433221 247888877777665554443
Q ss_pred h-cccCC
Q 043735 219 S-LVLPD 224 (336)
Q Consensus 219 ~-~~~~e 224 (336)
. +..+|
T Consensus 200 ~~~~~~e 206 (444)
T PRK09669 200 CFFMTKE 206 (444)
T ss_pred HhCCeEE
Confidence 3 34444
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-11 Score=110.51 Aligned_cols=142 Identities=14% Similarity=0.160 Sum_probs=108.1
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHH-HHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSML-FGGVLFFAGALINGF-----AQGVWMLIVGRLLLGFGIGF 149 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~-~~~~~~~i~~~~~~~-----~~~~~~~~~~r~l~g~~~~~ 149 (336)
|++..+.+.+.+...++..++.+..|+++||+|||+.+. .+.+...++.+.... .++.+.+.+..++.|++.+.
T Consensus 253 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 332 (402)
T TIGR00897 253 GFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAG 332 (402)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Confidence 888888899999999999999999999999999988764 333333333333222 23566667778888888776
Q ss_pred hhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhccc
Q 043735 150 ANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVL 222 (336)
Q Consensus 150 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 222 (336)
..+. ...+.|..| ++|+++.++.+....+|..++|.+.+.+.+. .||+..+++.++..++..+..+|+
T Consensus 333 ~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~---~g~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 333 YVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGF---FGAIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cchHHHHHHHHHHHHHHHHHHHHh
Confidence 5443 456677655 5899999999999999999999999999884 568888888777766666555554
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-11 Score=113.71 Aligned_cols=142 Identities=18% Similarity=0.101 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHhhhhhhhhhhHHHHhhhc
Q 043735 86 TSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQG----VWMLIVGRLLLGFGIGFANQSVPLYLSEM 161 (336)
Q Consensus 86 ~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~----~~~~~~~r~l~g~~~~~~~~~~~~~~~~~ 161 (336)
..+..++..++.++.++++||+|||++++.+.++.+++.++.++..+ ...+...-+...++.....+..+.+.+|.
T Consensus 341 ~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~ 420 (502)
T TIGR00887 341 LIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEV 420 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhcc
Confidence 33445566778899999999999999998888887777655554321 11111111111122222345667788999
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccC-------CchhHHHHhhhHHHHHHHHHhhcccCCChH
Q 043735 162 APYKYRGALNIGFQLSITIGILIANVLNYFFAKIKG-------GWGWRLSLGGAMVPALIITIGSLVLPDTPN 227 (336)
Q Consensus 162 ~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~-------~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~ 227 (336)
+|.+.|+++.++.+....+|++++|.+.+.+.+..+ +.++...+++.++..++..+..+++||+++
T Consensus 421 ~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~ 493 (502)
T TIGR00887 421 FPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETKG 493 (502)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccCCC
Confidence 999999999999999999999999999988876321 124455666666666655555577898763
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.7e-11 Score=110.35 Aligned_cols=150 Identities=17% Similarity=0.204 Sum_probs=129.0
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchh--HHHHHHHHHHHHHHHHHHh--------hhhHHHHHHHHHHH
Q 043735 74 YCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRK--KSMLFGGVLFFAGALINGF--------AQGVWMLIVGRLLL 143 (336)
Q Consensus 74 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr--~~l~~~~~~~~i~~~~~~~--------~~~~~~~~~~r~l~ 143 (336)
++|++..+...+..+..+...+|++++|++.||+|.| ++++.+++++.+..+...+ .++.+.+.+.-++.
T Consensus 311 ~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~ 390 (477)
T PF11700_consen 311 VLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLI 390 (477)
T ss_pred hcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHH
Confidence 3499999999999999999999999999999999999 8999988888776665555 56778888899999
Q ss_pred hhhhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccC
Q 043735 144 GFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLP 223 (336)
Q Consensus 144 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 223 (336)
|++.|..++..-++.+|+.|+++.+...+++.+..-..+.+||++.+.+.+..+ +-|+.+....++.++..++.++++
T Consensus 391 G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg--~~r~g~~~l~~lf~~gl~ll~~v~ 468 (477)
T PF11700_consen 391 GLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG--SQRYGFLFLLVLFLIGLILLFFVD 468 (477)
T ss_pred HHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999998765 466777666666666666656665
Q ss_pred CC
Q 043735 224 DT 225 (336)
Q Consensus 224 e~ 225 (336)
..
T Consensus 469 ~~ 470 (477)
T PF11700_consen 469 VE 470 (477)
T ss_pred ch
Confidence 43
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.8e-11 Score=113.36 Aligned_cols=148 Identities=16% Similarity=0.045 Sum_probs=111.0
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHh-----hh------hHHHHHHHHHHHh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGF-----AQ------GVWMLIVGRLLLG 144 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~-----~~------~~~~~~~~r~l~g 144 (336)
|++..+.++......++..++.++.|+++||+|||+.+..+.++.+++.++..+ .+ +...+....++.+
T Consensus 315 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (481)
T TIGR00879 315 GVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIA 394 (481)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHH
Confidence 778888899999999999999999999999999999999988888877766652 11 2222222232222
Q ss_pred hhhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhh-cccC
Q 043735 145 FGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGS-LVLP 223 (336)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~ 223 (336)
.......+....++.|.+|+++|+++.++.+....+|.+++|.+.+.+.+. .+|++.|++.++++++..+.. ++.|
T Consensus 395 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~i~~~~~~~ 471 (481)
T TIGR00879 395 FFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLES---IGVGGVFIFFGGLNVLGLIFVYFFLP 471 (481)
T ss_pred HHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCccceehhHHHHHHHHHHHHheecc
Confidence 222233456667789999999999999999999999999999999988773 468888877777766555544 4566
Q ss_pred CCh
Q 043735 224 DTP 226 (336)
Q Consensus 224 e~~ 226 (336)
|++
T Consensus 472 ~~~ 474 (481)
T TIGR00879 472 ETK 474 (481)
T ss_pred cCC
Confidence 654
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.9e-11 Score=109.98 Aligned_cols=136 Identities=19% Similarity=0.112 Sum_probs=117.0
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHHHHhhhc
Q 043735 82 LTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEM 161 (336)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~~~~~~~ 161 (336)
.+.+.++..++..++.+..|++.||+|||+.+..+.++..++.+...+.++.+.+.+.+++.|++.+...+....++.+.
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 339 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN 339 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence 45666677788889999999999999999999999888888777777777888888899999999999999988899999
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhc
Q 043735 162 APYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSL 220 (336)
Q Consensus 162 ~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (336)
.|+++||+..+.++....+|..++|.+++.+.+. .||++.|++.++..++..+..+
T Consensus 340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~---~g~~~~f~~~~~~~l~~~~~~~ 395 (408)
T PRK09874 340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN---YGFRAVFLVTAGVVLFNAVYSW 395 (408)
T ss_pred CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh---cchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998873 5799999988777766655544
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.4e-11 Score=109.54 Aligned_cols=140 Identities=14% Similarity=0.080 Sum_probs=100.4
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhH--HHHH------HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKK--SMLF------GGVLFFAGALINGFAQGVWMLIVGRLLLGFGI 147 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~--~l~~------~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~ 147 (336)
|.+..+.+++.+...++..++.++.|+++||+|||+ .... +.++..+........++.+.......+.+.+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (399)
T TIGR00893 247 GLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGL 326 (399)
T ss_pred cccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhch
Confidence 778888999999999999999999999999999996 1111 11111111111111233444444444444444
Q ss_pred hhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCch-hHHHHhhhHHHHHHHHHhh
Q 043735 148 GFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWG-WRLSLGGAMVPALIITIGS 219 (336)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~-w~~~~~~~~~~~~~~~~~~ 219 (336)
+ ..+....++.|.+|+++|++..++.+....+|..++|.+.+.+.+. .| |+..+++.++..++..+..
T Consensus 327 ~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 327 G-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAAT---TGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred h-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccC---CCchhHHHHHHHHHHHHHHHHH
Confidence 4 7888899999999999999999999999999999999999999874 34 8888877666655554443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.9e-12 Score=115.38 Aligned_cols=149 Identities=16% Similarity=0.205 Sum_probs=114.7
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhh----hhchhHH-HHHHHHHHHHHHHHHHhh-h-------hHHHHHHHHHH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTR----KFGRKKS-MLFGGVLFFAGALINGFA-Q-------GVWMLIVGRLL 142 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d----r~Grr~~-l~~~~~~~~i~~~~~~~~-~-------~~~~~~~~r~l 142 (336)
|+++...+.+..+.-+..++..++.|.++| |+||||. ++++....+++.+++... + ....+.+..++
T Consensus 33 gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l 112 (428)
T PF13347_consen 33 GLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYIL 112 (428)
T ss_pred CCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHH
Confidence 899999999999999999999999999999 8997664 556778888887777655 3 12335666677
Q ss_pred HhhhhhhhhhhHHHHhhhcCC-CccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCC----chhHHHHhhhHHHHHHHHH
Q 043735 143 LGFGIGFANQSVPLYLSEMAP-YKYRGALNIGFQLSITIGILIANVLNYFFAKIKGG----WGWRLSLGGAMVPALIITI 217 (336)
Q Consensus 143 ~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~----~~w~~~~~~~~~~~~~~~~ 217 (336)
..++.........++..|+.+ +++|.+..+.-..+..+|..+...+.+.+.+..++ .+|++..++.+++.++..+
T Consensus 113 ~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~ 192 (428)
T PF13347_consen 113 FDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFL 192 (428)
T ss_pred HHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhh
Confidence 788888888888899999997 57899999998888888887777777666654331 2799888877777665555
Q ss_pred hh-cccCC
Q 043735 218 GS-LVLPD 224 (336)
Q Consensus 218 ~~-~~~~e 224 (336)
.. +..+|
T Consensus 193 i~~~~~ke 200 (428)
T PF13347_consen 193 ITFFFVKE 200 (428)
T ss_pred hhhheeee
Confidence 44 45566
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.8e-11 Score=108.24 Aligned_cols=129 Identities=15% Similarity=0.058 Sum_probs=104.9
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHhhhhhhhhhhH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGAL-INGFAQGVWMLIVGRLLLGFGIGFANQSV 154 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~-~~~~~~~~~~~~~~r~l~g~~~~~~~~~~ 154 (336)
|++..+.+++.+...++..++.++.|++.||+|||+.+..+.++..+..+ .....++.+.+.+..++.+++.+...+..
T Consensus 270 g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (405)
T TIGR00891 270 GLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGIL 349 (405)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhH
Confidence 88899999999999999999999999999999999998888776543332 33334556666666677777777777788
Q ss_pred HHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHh
Q 043735 155 PLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLG 206 (336)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~ 206 (336)
..++.|.+|+++|+++.++.+....+|..++|++.+.+.+..+ .|+..+.
T Consensus 350 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g--~~~~~~~ 399 (405)
T TIGR00891 350 PKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD--EYGTALA 399 (405)
T ss_pred HHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc--ccchhHH
Confidence 8899999999999999999999999999999999999988533 1554443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.9e-10 Score=98.04 Aligned_cols=149 Identities=15% Similarity=0.220 Sum_probs=102.6
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVP 155 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~ 155 (336)
|+++.|++.+....+...++...+.|.++||+|||+.-+..+++.+++++ +-..++++.++++|++.|++....+++-.
T Consensus 65 g~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~FE 143 (354)
T PF05631_consen 65 GFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAFE 143 (354)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999986 44568899999999999999988887766
Q ss_pred H-HhhhcC----CCccchhHHHHHH-HHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhh-cccCCCh
Q 043735 156 L-YLSEMA----PYKYRGALNIGFQ-LSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGS-LVLPDTP 226 (336)
Q Consensus 156 ~-~~~~~~----~~~~r~~~~~~~~-~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~ 226 (336)
+ ++.|.- |++..+...+... ....+-.+.+.+++.++.+..+ .|-..+|.......+++.+.. ...+|..
T Consensus 144 sW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~-~g~vaPF~~a~~~l~~~~~~I~~~W~ENy 220 (354)
T PF05631_consen 144 SWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG-FGPVAPFDAAIVLLAVAAVLILKTWPENY 220 (354)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHHHHhcccccC
Confidence 6 444542 2222233222222 2223334444555555554332 233566766555544444443 3445543
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-10 Score=105.53 Aligned_cols=120 Identities=14% Similarity=0.125 Sum_probs=91.2
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh--hhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGF--GIGFANQS 153 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~--~~~~~~~~ 153 (336)
|.+..+.+.+.+...++..++.++.|++.||+|||+.+..+.++..+..+.....++.....+...+.|+ +.....+.
T Consensus 262 g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (426)
T PRK12307 262 GFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGL 341 (426)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHH
Confidence 7788888999999999999999999999999999999988887776665544433221112222233333 22233455
Q ss_pred HHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 043735 154 VPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKI 195 (336)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 195 (336)
.+.++.|.+|+++|+++.++......+|+.++|.+.+.+.+.
T Consensus 342 ~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~ 383 (426)
T PRK12307 342 VPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGIT 383 (426)
T ss_pred HHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHc
Confidence 667889999999999999999999999999999999998874
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.7e-10 Score=101.95 Aligned_cols=134 Identities=18% Similarity=0.114 Sum_probs=111.3
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVP 155 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~ 155 (336)
|.+..+.+.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.+.....++.+.+++..++.|++.+...+...
T Consensus 236 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 315 (382)
T PRK11128 236 GYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAM 315 (382)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999999999888888888888999889999999999998888888
Q ss_pred HHhhhcCCCccchhHHHHHH-HHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHH
Q 043735 156 LYLSEMAPYKYRGALNIGFQ-LSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALI 214 (336)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~ 214 (336)
.++.+. +++++++..+.++ ....+|..++|.+++.+.+.. |+ ..++..+++.+.
T Consensus 316 ~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~---g~-~~~~~~~~~~~~ 370 (382)
T PRK11128 316 RYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL---GA-GVFWVMALVALP 370 (382)
T ss_pred HHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cH-HHHHHHHHHHHH
Confidence 888886 5566788888775 556778899999999998853 45 344444444443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.8e-11 Score=109.35 Aligned_cols=143 Identities=13% Similarity=0.039 Sum_probs=100.2
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchh-------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRK-------KSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIG 148 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr-------~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~ 148 (336)
|++..+.+.+.++..++..++.+++|+++||+||| ..+....++.+++.++....++.+...+..++.+++.+
T Consensus 284 g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 363 (476)
T PLN00028 284 GLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQ 363 (476)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999876 22333333333333444445555555555666677666
Q ss_pred hhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccC
Q 043735 149 FANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLP 223 (336)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 223 (336)
...+....++.+..| ++||...++.+.+..+|+.++|.+.. ..+..+|+..|.+.+++.+++.++.++++
T Consensus 364 ~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~----~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 364 AACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF----TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred HhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH----hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 666666666777654 68999999988887778777776543 11224688888887777776666666554
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-10 Score=108.26 Aligned_cols=138 Identities=25% Similarity=0.157 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHhhhhhhhhhhHHHHhhhc
Q 043735 84 LFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGV--WMLIVGRLLLGFGIGFANQSVPLYLSEM 161 (336)
Q Consensus 84 ~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~--~~~~~~r~l~g~~~~~~~~~~~~~~~~~ 161 (336)
+...+..+...++.++.+++.||+|||+.+.++.++.+++.++..+.++. +...+..++.+++.+..++....+..|.
T Consensus 359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 438 (505)
T TIGR00898 359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL 438 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33445566778889999999999999999999999988888777766543 4455556677777777788888999999
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCCCh
Q 043735 162 APYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTP 226 (336)
Q Consensus 162 ~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~ 226 (336)
+|++.|+.++++.+....+|++++|.+.+ +.+ .++...+.+.++..++..+..+++||+.
T Consensus 439 ~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 439 YPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE----KWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred ccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH----HHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 99999999999999999999999999888 433 3455666666666666666667888875
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-10 Score=105.74 Aligned_cols=146 Identities=14% Similarity=0.012 Sum_probs=92.7
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHH--h--hhhHHHHHHHHHHHhhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALING--F--AQGVWMLIVGRLLLGFGIGFAN 151 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~--~--~~~~~~~~~~r~l~g~~~~~~~ 151 (336)
|.+..+.+...++..++..+++++.|+++||+|||+++....++.++...... . .++....+..-.+.+++.+...
T Consensus 275 g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (432)
T PRK10406 275 GMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYT 354 (432)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888899999999999999999988776655443332221 1 1222222222222333334444
Q ss_pred hhHHHHhhhcCCCccchhHHHHHHHHHH-HHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCC
Q 043735 152 QSVPLYLSEMAPYKYRGALNIGFQLSIT-IGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPD 224 (336)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e 224 (336)
+....++.|++|++.|+.+.++.+...+ +++...|.+.+.+... + .|...+++.++..++..+..+++++
T Consensus 355 ~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~-g--~~~~~~~~~~~~~~i~~~~~~~l~~ 425 (432)
T PRK10406 355 SISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSI-G--METAFFWYVTLMAVVAFLVSLMLHR 425 (432)
T ss_pred HHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHh-C--CCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 5567889999999999999998776544 3344577777755432 2 2545555555555555555444433
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-10 Score=106.63 Aligned_cols=120 Identities=11% Similarity=0.095 Sum_probs=101.9
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHhhhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFA---QGVWMLIVGRLLLGFGIGFANQ 152 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~---~~~~~~~~~r~l~g~~~~~~~~ 152 (336)
|.+..+.+++.....++..++.++.|++.||+|||+++..+.++..+...+..+. ++.+.+.+..++.|++.+..++
T Consensus 293 g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 372 (471)
T PRK10504 293 GFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFS 372 (471)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHH
Confidence 7788889999988889999999999999999999999998888888777665543 2334445566778888888888
Q ss_pred hHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 043735 153 SVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKI 195 (336)
Q Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 195 (336)
....++.+..|++.|+.+.++.+....+|..+++.+.+.+.+.
T Consensus 373 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~ 415 (471)
T PRK10504 373 SMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGL 415 (471)
T ss_pred HHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999888664
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.6e-11 Score=105.64 Aligned_cols=143 Identities=23% Similarity=0.366 Sum_probs=123.7
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhh-chhHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHhhhhhhhh
Q 043735 75 CQYNSETLTLFTSSLYLAALLSSLVASSVTRKF-GRKKSMLFGGVLFFAGALINGFAQ--GVWMLIVGRLLLGFGIGFAN 151 (336)
Q Consensus 75 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~r~l~g~~~~~~~ 151 (336)
+|+|++++.-+.+++...--+..+++||++||+ |+|+.+..+.++..++.++.+.+. ....+.++-.+.++|.|..=
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K 135 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK 135 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence 689999999999999888889999999999997 999999999999999999998874 67888899999999999999
Q ss_pred hhHHHHhhhcCCCcc--chhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhc
Q 043735 152 QSVPLYLSEMAPYKY--RGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSL 220 (336)
Q Consensus 152 ~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (336)
+...+++.|.+|+++ |-...++++++.++|+.++|++.+++.+. .||...|...++-.....+..+
T Consensus 136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~---~g~~~gF~~aavGm~~gl~~f~ 203 (498)
T COG3104 136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAIN---YGWHVGFGLAAVGMIIGLVIFL 203 (498)
T ss_pred ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998754 56788899999999999999999999884 5799888766655444444333
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.5e-10 Score=104.44 Aligned_cols=142 Identities=15% Similarity=0.111 Sum_probs=96.2
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhh--chhHHHH-HHHHHHHHHHHHHHh--hhhHHHHHHHHHHHhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKF--GRKKSML-FGGVLFFAGALINGF--AQGVWMLIVGRLLLGFGIGFA 150 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--Grr~~l~-~~~~~~~i~~~~~~~--~~~~~~~~~~r~l~g~~~~~~ 150 (336)
|++..+.+++.....++..++.++.|+++||+ |||+... ....+..++.+.... ..+.+...+..++.|.+....
T Consensus 285 g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 364 (452)
T PRK11273 285 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGP 364 (452)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhH
Confidence 77888889998999999999999999999999 5554332 222222333222222 223444444455555543333
Q ss_pred hhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHH-HHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhc
Q 043735 151 NQSVPLYLSEMAPYKYRGALNIGFQLSITIGILI-ANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSL 220 (336)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (336)
......+..|.+|+++||++.++.+....+|+.+ +|.+.+.+.+. .||+..|++.+..+++.++...
T Consensus 365 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~---~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 365 VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF---FGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH---hcchHHHHHHHHHHHHHHHHHH
Confidence 3334456789999999999999998888887654 78999988874 4688888876666665555443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.8e-10 Score=101.58 Aligned_cols=119 Identities=18% Similarity=0.118 Sum_probs=108.9
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHhhhhhhhhhhH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQG-VWMLIVGRLLLGFGIGFANQSV 154 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~r~l~g~~~~~~~~~~ 154 (336)
|.+..+.+.+.+...++..++.++.+++.||+|||+.+..+.++.+++.+...+.++ .+.+.+..++.|++.+...+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 322 (365)
T TIGR00900 243 GRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQ 322 (365)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 788889999999999999999999999999999999999888888888777777664 7888888999999999999999
Q ss_pred HHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043735 155 PLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAK 194 (336)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~ 194 (336)
..++.|..|+++|++..++++....+|..++|.+.+.+.+
T Consensus 323 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 323 GTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998876
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.9e-10 Score=101.77 Aligned_cols=150 Identities=13% Similarity=0.061 Sum_probs=109.0
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhHHhhhh----hchhH-HHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHH
Q 043735 75 CQYNSETLTLFTSSLYLAALLSSLVASSVTRK----FGRKK-SMLFGGVLFFAGALINGFAQG------VWMLIVGRLLL 143 (336)
Q Consensus 75 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr----~Grr~-~l~~~~~~~~i~~~~~~~~~~------~~~~~~~r~l~ 143 (336)
+|++...+|.+..+.-+.-++..++.|.++|| +|||| .++++.+..+++.+++...++ ...+.+..++.
T Consensus 40 ~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~ 119 (460)
T PRK11462 40 FGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLL 119 (460)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 39999999999999999999999999999996 68865 555676777777766554432 33455556667
Q ss_pred hhhhhhhhhhHHHHhhhcCC-CccchhHHHHHHHHHHHHHHHHHHHHHHhhcccC----CchhHHHHhhhHHHHHHHHHh
Q 043735 144 GFGIGFANQSVPLYLSEMAP-YKYRGALNIGFQLSITIGILIANVLNYFFAKIKG----GWGWRLSLGGAMVPALIITIG 218 (336)
Q Consensus 144 g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~----~~~w~~~~~~~~~~~~~~~~~ 218 (336)
.++.........++.+|+.+ +++|.+..+.-..+..+|..+++.+...+....+ ..+|+....+.+++.+++.+.
T Consensus 120 ~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i 199 (460)
T PRK11462 120 TLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAF 199 (460)
T ss_pred HHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 77888777788889999876 7889999999999999988888777655444322 136777766666665544443
Q ss_pred hc-ccCC
Q 043735 219 SL-VLPD 224 (336)
Q Consensus 219 ~~-~~~e 224 (336)
.+ ..+|
T Consensus 200 ~~~~~kE 206 (460)
T PRK11462 200 CFFTTKE 206 (460)
T ss_pred HHhccee
Confidence 33 3444
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.1e-10 Score=103.45 Aligned_cols=122 Identities=17% Similarity=0.152 Sum_probs=90.6
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHH-HH---hhhhHHHHHHHHHHHhhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALI-NG---FAQGVWMLIVGRLLLGFGIGFAN 151 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~-~~---~~~~~~~~~~~r~l~g~~~~~~~ 151 (336)
|++..+.+++.....++..++.+++|+++||+|||+++..+.++..+.... .. ..+++..+.+..++.+++.+...
T Consensus 270 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 349 (434)
T PRK15075 270 HLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYN 349 (434)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH
Confidence 788888888888999999999999999999999999888765554332221 11 12334444444566677777767
Q ss_pred hhHHHHhhhcCCCccchhHHHHH-HHHHHHHHHHHHHHHHHhhcccC
Q 043735 152 QSVPLYLSEMAPYKYRGALNIGF-QLSITIGILIANVLNYFFAKIKG 197 (336)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~l~~~~~~~~~ 197 (336)
+....++.|.+|+++|+...++. +.+..+++.++|.+.+.+.+..+
T Consensus 350 ~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g 396 (434)
T PRK15075 350 GAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG 396 (434)
T ss_pred hhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence 77778899999999999999985 44444567789999998887543
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.1e-10 Score=97.33 Aligned_cols=126 Identities=13% Similarity=0.089 Sum_probs=101.1
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhH
Q 043735 75 CQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSV 154 (336)
Q Consensus 75 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~ 154 (336)
+|++.++.+...+.+..+..+|.+..+++.||+|+|+++.++.++..++.++....++... ...-++.|++.+..+|..
T Consensus 173 ~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~ 251 (310)
T TIGR01272 173 LGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPTI 251 (310)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999999999999999999999998888888777765555444333 345668899999999999
Q ss_pred HHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHh
Q 043735 155 PLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLG 206 (336)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~ 206 (336)
.+...+..|++ .+.+.++. ....+|+.+.|++.+.+.+. .|.+..++
T Consensus 252 ~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~---~g~~~a~~ 298 (310)
T TIGR01272 252 FSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADC---LGIQLAFA 298 (310)
T ss_pred HHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHh---ccchHHHH
Confidence 99998888764 45556665 56678999999999998874 35666665
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.6e-10 Score=102.39 Aligned_cols=146 Identities=10% Similarity=0.132 Sum_probs=112.4
Q ss_pred cCCCchhHHHH-HHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHH---Hhh-hhHHHHHHHHHHHhhhhhhh
Q 043735 76 QYNSETLTLFT-SSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALIN---GFA-QGVWMLIVGRLLLGFGIGFA 150 (336)
Q Consensus 76 ~~s~~~~~~~~-~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~---~~~-~~~~~~~~~r~l~g~~~~~~ 150 (336)
|+|.++.+++. ....++..++.+++|+++||+|||+.+..+.++..+..+.. ... ++.+.+.+..++..++.|..
T Consensus 254 G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~ 333 (491)
T PRK11010 254 GFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMG 333 (491)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 88999999987 46678999999999999999999988777666555544322 222 34444555566666666666
Q ss_pred hhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCC
Q 043735 151 NQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPD 224 (336)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e 224 (336)
.+...++..+..+++.+++..++.+....+|..+++.+.+.+.+. .||+..|.+..+.++...+....+++
T Consensus 334 ~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~---~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 334 TAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEA---HGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677788889999999999999999999999999888889988884 57998888877777776666555544
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.1e-10 Score=100.59 Aligned_cols=140 Identities=15% Similarity=0.199 Sum_probs=116.5
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVP 155 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~ 155 (336)
+.+....+.+.+...+...++.+..|++.||+|||+.+.++.++.++...+....++.+.+++.+++.|++.+.......
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778888999999999999999999999999999999988888887777788888888889999998877766777
Q ss_pred HHhhhcCCCccchhHHHH-HHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHh
Q 043735 156 LYLSEMAPYKYRGALNIG-FQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIG 218 (336)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 218 (336)
.+..+..+++.|+...+. ++....+|..+++.+.+++.+. .||+..|.+.++..++..+.
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~---~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS---IGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh---cccHHHHHHHHHHHHHHHHH
Confidence 788888888888876665 6788999999999999999884 46898988877776555443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.6e-10 Score=102.53 Aligned_cols=142 Identities=18% Similarity=0.093 Sum_probs=97.2
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhh--chhHHH-HHHHHHHH--HHHHHHHhhhhHHHHHHHHHHHhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKF--GRKKSM-LFGGVLFF--AGALINGFAQGVWMLIVGRLLLGFGIGFA 150 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--Grr~~l-~~~~~~~~--i~~~~~~~~~~~~~~~~~r~l~g~~~~~~ 150 (336)
|++..+.+...+...++..++.++.|+++||+ ++|+.. ....+... ...+......+.....+..+..|++....
T Consensus 275 g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 354 (434)
T PRK11663 275 GVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGP 354 (434)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhH
Confidence 88999999999999999999999999999999 333322 22111111 11111111223333333444445433322
Q ss_pred hhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhc
Q 043735 151 NQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSL 220 (336)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (336)
.......+.|.+|+++|+++.++.+....+|..++|.+.+.+.+. .||+..|+..+++.++..+..+
T Consensus 355 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~---~g~~~~f~~~~~~~~~~~~~~~ 421 (434)
T PRK11663 355 QMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEI---WHWTGFFVVISIAAGISALLLL 421 (434)
T ss_pred HHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHh---cccHHHHHHHHHHHHHHHHHHH
Confidence 333345678999999999999999999999999999999999874 5699998877777666555443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-10 Score=104.34 Aligned_cols=117 Identities=10% Similarity=0.071 Sum_probs=97.4
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVP 155 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~ 155 (336)
|.+..+.++..+...++..++.++.|++.||+|||+.+....+....+.......++.+...+..++.|++.+...+...
T Consensus 281 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 360 (398)
T TIGR00895 281 GFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLY 360 (398)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888899999999999999999999999999999554444433333333333355667777888999999999999999
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 043735 156 LYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFF 192 (336)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 192 (336)
.++.|.+|+++|+++.++......+|..++|.+.+.+
T Consensus 361 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 361 ALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 9999999999999999999999999999999988764
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.7e-10 Score=99.73 Aligned_cols=150 Identities=23% Similarity=0.255 Sum_probs=130.7
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhh
Q 043735 74 YCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQS 153 (336)
Q Consensus 74 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~ 153 (336)
++|++..+...+.....+..++|++++|+|.||+|.|+++..++++..+.++...+...-..+.++-.+.|.+.|+.+..
T Consensus 282 ~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~ 361 (438)
T COG2270 282 DLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQAS 361 (438)
T ss_pred HcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHH
Confidence 45999999999999999999999999999999999999999999999999988777766666777788999999999999
Q ss_pred HHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCCC
Q 043735 154 VPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDT 225 (336)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~ 225 (336)
.-++.++..|+++-++..+++++....++.++|.+.+.+.+..+ .-|..+....++.++..+..+.+|+.
T Consensus 362 SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg--~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 362 SRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG--SSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc--chhhHHHHHHHHHHhhHhhEEeecCC
Confidence 99999999999999999999999999999999999999998766 46666665555555555666666654
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.8e-10 Score=104.85 Aligned_cols=139 Identities=20% Similarity=0.305 Sum_probs=123.7
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVP 155 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~ 155 (336)
|.+....|++.++..+|..+|++..+++.+|+++++++..+.++.+++.+..++.++.+...+..++.|++.....+...
T Consensus 250 ~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~ 329 (524)
T PF05977_consen 250 GGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLN 329 (524)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHH
Q 043735 156 LYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITI 217 (336)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 217 (336)
+.+.+..|++.||++++++.+....+..+|..+.|.+.+. .|.+..+.+.++..++..+
T Consensus 330 t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~---~g~~~al~~a~~~lll~~~ 388 (524)
T PF05977_consen 330 TLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADH---FGVRTALLIAGAALLLSAL 388 (524)
T ss_pred HHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999884 4577777665554443333
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.9e-10 Score=98.39 Aligned_cols=121 Identities=18% Similarity=0.082 Sum_probs=96.5
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhh-chhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKF-GRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSV 154 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~ 154 (336)
|.|..+.+.+.+...++..+++++.|++.||+ +||+.+..+.++.+++.+...+.++..... ...+.|++.+..++..
T Consensus 228 g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~ 306 (355)
T TIGR00896 228 GASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLA 306 (355)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHH
Confidence 78889999999999999999999999999999 567777777777777776666655433222 4567899998888887
Q ss_pred HHHhhhcCC-CccchhHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 043735 155 PLYLSEMAP-YKYRGALNIGFQLSITIGILIANVLNYFFAKIKG 197 (336)
Q Consensus 155 ~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~ 197 (336)
...+.+..+ +++++...++.+....++..++|.+.+.+.+..+
T Consensus 307 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 307 LTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777665554 4566888888888888999999999999988654
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.2e-09 Score=94.73 Aligned_cols=142 Identities=13% Similarity=0.173 Sum_probs=115.7
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHhhhhhhhhhh
Q 043735 75 CQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFA-QGVWMLIVGRLLLGFGIGFANQS 153 (336)
Q Consensus 75 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~-~~~~~~~~~r~l~g~~~~~~~~~ 153 (336)
.|+|.+.++++...+.++..+|+++.|+++|| +.|+.+.....+..+..+...+. ++.+...+.-++.|+..+.....
T Consensus 242 ~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~ 320 (394)
T COG2814 242 AGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQG 320 (394)
T ss_pred cCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhH
Confidence 38899999999999999999999999999999 99999988888888877666554 45556666667777776666666
Q ss_pred HHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcc
Q 043735 154 VPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLV 221 (336)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 221 (336)
...-.++ ..++.+..+.+++....++|..+|..+++.+.+. +|+....+..++..+.+.+..+.
T Consensus 321 ~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~---~g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 321 LQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDA---LGYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred HHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hchHHHHHHHHHHHHHHHHHHHH
Confidence 5666666 4457789999999999999999999999999984 67888888888877766665543
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.8e-10 Score=103.74 Aligned_cols=134 Identities=11% Similarity=0.054 Sum_probs=91.2
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHH-HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKS-MLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSV 154 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~-l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~ 154 (336)
|.+..+.+.+.+...++..++.+..|+++||++||+. .....++..++..+....++.....+.-.+.+++.....+..
T Consensus 275 ~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 354 (412)
T TIGR02332 275 GSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIF 354 (412)
T ss_pred CCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHH
Confidence 5567788999999999999999999999999997774 333333333333222222222222222223333333333444
Q ss_pred HHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHH
Q 043735 155 PLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVP 211 (336)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~ 211 (336)
.....|.+|+++|+.+.++.+....+|+.++|.+.+.+.+..+ +|++.+++.++.
T Consensus 355 ~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g--~~~~~~~~~~~~ 409 (412)
T TIGR02332 355 WTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATG--SFNSGLWFVAAL 409 (412)
T ss_pred HhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCC--CCchhHHHHHHH
Confidence 4556788999999999999999999999999999998887543 477777655443
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.4e-09 Score=94.64 Aligned_cols=139 Identities=16% Similarity=0.107 Sum_probs=103.4
Q ss_pred cCCCchhHHHHHHHH-HHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHh------hhhHHHHHHHHHHHhhhhh
Q 043735 76 QYNSETLTLFTSSLY-LAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGF------AQGVWMLIVGRLLLGFGIG 148 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~-~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~------~~~~~~~~~~r~l~g~~~~ 148 (336)
|++.++.+++..... ....++.++.|++.||+|+|+.+..+.++.++..+.... .++...+.....+.+++.+
T Consensus 239 G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 318 (390)
T TIGR02718 239 GWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITG 318 (390)
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHH
Confidence 889999999888776 466778899999999999999998877665333322221 1223334444556666677
Q ss_pred hhhhhHHHHhhhcCCC-ccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHH
Q 043735 149 FANQSVPLYLSEMAPY-KYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITI 217 (336)
Q Consensus 149 ~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 217 (336)
...+.....+.+..++ +.+++..+..+...++|..++|.+++.+.+. .|++..|...++..++..+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~---~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 319 ITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR---FGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HccHHHHHHHHHHHHHHHH
Confidence 7777777777777766 7889999999999999999999999999874 4688888776665555443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.4e-09 Score=97.39 Aligned_cols=119 Identities=24% Similarity=0.296 Sum_probs=99.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHhhhhhhhhhhHHH
Q 043735 78 NSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFA-QGVWMLIVGRLLLGFGIGFANQSVPL 156 (336)
Q Consensus 78 s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~-~~~~~~~~~r~l~g~~~~~~~~~~~~ 156 (336)
+..+.+++.+...++..++.+++++++||+|||+++..+.++.+++.+...+. ++.+.+.+..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888899999999999999999999999999988888887666554 35666777788899999988899899
Q ss_pred HhhhcCC-------CccchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 043735 157 YLSEMAP-------YKYRGALNIGFQLSITIGILIANVLNYFFAKIK 196 (336)
Q Consensus 157 ~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 196 (336)
+++|..+ ++.+|...++++....+|..+++.+.+.+.+..
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~ 381 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII 381 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9998875 455699999999999999999999999887643
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.6e-09 Score=95.22 Aligned_cols=135 Identities=10% Similarity=0.031 Sum_probs=103.2
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVP 155 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~ 155 (336)
|++..+.+.+.....++..++.++.+++.||.+|+..+....+......++....++.+.+.+..++.|++.+...+...
T Consensus 248 g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~ 327 (394)
T PRK10213 248 GFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWS 327 (394)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHH
Confidence 88888999999999999999999999999996544434433333333344444556777778888999999988888888
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHH
Q 043735 156 LYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALI 214 (336)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~ 214 (336)
..+.+..| +++++..+.......+|..+|+.+++.+.+. .|++..++..++..++
T Consensus 328 ~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~---~g~~~~~~~~~~~~~~ 382 (394)
T PRK10213 328 TWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDN---IGLTSPLMLSGTLMLL 382 (394)
T ss_pred HHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChhhHHHHHHHHHHH
Confidence 88888887 4566777777888899999999999999884 4577777665554433
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.4e-09 Score=93.44 Aligned_cols=147 Identities=18% Similarity=0.177 Sum_probs=113.6
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhh----hH--H---HHHHHHHHHhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQ----GV--W---MLIVGRLLLGFG 146 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~----~~--~---~~~~~r~l~g~~ 146 (336)
|++..++.+.+....+...+..+++..+.||+|||+.++.+..++.+..+++...- .. | ..+++.++..++
T Consensus 301 G~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~ 380 (485)
T KOG0569|consen 301 GFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIIS 380 (485)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999999999999999999999999999887665431 11 1 223444555544
Q ss_pred hhhh-hhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHH-HhhcccCC
Q 043735 147 IGFA-NQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIIT-IGSLVLPD 224 (336)
Q Consensus 147 ~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~e 224 (336)
.+.. -|..+-+.+|++|++.|..+.+.......+..++....-..+.+..+ - +.|++..++.++.. ..++.+||
T Consensus 381 f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g---~-~~filF~i~~~~~~i~~~~~lPE 456 (485)
T KOG0569|consen 381 FAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG---P-YVFILFVIPLAIFLIYLYRYLPE 456 (485)
T ss_pred hhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---c-hhhHHHHHHHHHHHHHHHHhCcc
Confidence 4433 57778899999999999999999999988888888877777777544 2 45666666655444 44568999
Q ss_pred Ch
Q 043735 225 TP 226 (336)
Q Consensus 225 ~~ 226 (336)
++
T Consensus 457 Tk 458 (485)
T KOG0569|consen 457 TK 458 (485)
T ss_pred cC
Confidence 86
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-09 Score=100.93 Aligned_cols=146 Identities=18% Similarity=0.095 Sum_probs=97.6
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHH--------HHHHHHH--HHHHHHHHh-hhhHHHHHHHHHHHh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSM--------LFGGVLF--FAGALINGF-AQGVWMLIVGRLLLG 144 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l--------~~~~~~~--~i~~~~~~~-~~~~~~~~~~r~l~g 144 (336)
|.+..+.+++.++..++..++.++.|+++||+++|+.. ..+.... .+..+.... ..+....++.-.+.+
T Consensus 293 g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 372 (465)
T TIGR00894 293 RVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLAN 372 (465)
T ss_pred CcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 88899999999999999999999999999998755321 1111111 111111111 223333444445555
Q ss_pred hhhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhccc
Q 043735 145 FGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVL 222 (336)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 222 (336)
.+.+...+.......|..|+ .+|.+.++.+....+|+.++|.+.+.+.+..+..+|...|.+.++..++..+...+.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 449 (465)
T TIGR00894 373 AVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIF 449 (465)
T ss_pred HHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeee
Confidence 55554555555555676665 789999999999999999999999887764322358888888777766666555444
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.8e-09 Score=97.26 Aligned_cols=152 Identities=16% Similarity=0.173 Sum_probs=116.9
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhHHhhhh----hch-hHHHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHH
Q 043735 75 CQYNSETLTLFTSSLYLAALLSSLVASSVTRK----FGR-KKSMLFGGVLFFAGALINGFAQG------VWMLIVGRLLL 143 (336)
Q Consensus 75 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr----~Gr-r~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~r~l~ 143 (336)
+|++...+|.+..+.=+.-++..|+.|.+.|| +|| |+.++++.+..++.+.++..+++ .....+...+.
T Consensus 43 ~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~ 122 (467)
T COG2211 43 FGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLL 122 (467)
T ss_pred cCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHH
Confidence 49999999999999999999999999999995 776 45677787888888887776653 33455566888
Q ss_pred hhhhhhhhhhHHHHhhhcC-CCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccC----CchhHHHHhhhHHHHHHHHHh
Q 043735 144 GFGIGFANQSVPLYLSEMA-PYKYRGALNIGFQLSITIGILIANVLNYFFAKIKG----GWGWRLSLGGAMVPALIITIG 218 (336)
Q Consensus 144 g~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~----~~~w~~~~~~~~~~~~~~~~~ 218 (336)
+++.........++.+|+. +++||.+..+.-..+.++|..+...+...+....+ ..||+...++.++++++..+.
T Consensus 123 ~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~ 202 (467)
T COG2211 123 GLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLF 202 (467)
T ss_pred HHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888886 55789999999999999998887777766665433 347888877777776665554
Q ss_pred hc-ccCCCh
Q 043735 219 SL-VLPDTP 226 (336)
Q Consensus 219 ~~-~~~e~~ 226 (336)
.+ -.+|.+
T Consensus 203 ~~~~v~ER~ 211 (467)
T COG2211 203 CFFNVKERV 211 (467)
T ss_pred HHHHhhccc
Confidence 43 355543
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.2e-09 Score=94.62 Aligned_cols=145 Identities=19% Similarity=0.258 Sum_probs=121.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHHH
Q 043735 77 YNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPL 156 (336)
Q Consensus 77 ~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~~ 156 (336)
.+....|.+.+...+.-++.-.+..++.+|+|.|+.++++.++.++=..+++++++.+.+.+.+.+.|+..+........
T Consensus 256 ~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fk 335 (412)
T PF01306_consen 256 QGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFK 335 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCccchhHHHH-HHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhh-cccCC
Q 043735 157 YLSEMAPYKYRGALNIG-FQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGS-LVLPD 224 (336)
Q Consensus 157 ~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e 224 (336)
|+.+.+|+|..++...+ .+.+..+|..+.+.++|.+.+ +.|.+..|++.+.+.+...++. +.+++
T Consensus 336 YI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd---~~G~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 336 YITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYD---RIGFQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp HHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHh---hcCcHHHHHHHHHHHHHHHHHheeeecC
Confidence 99999999887777776 578889999999999999988 4678888877777665555544 44543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=4e-09 Score=88.04 Aligned_cols=150 Identities=18% Similarity=0.180 Sum_probs=112.0
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHh
Q 043735 72 NQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFA-------QGVWMLIVGRLLLG 144 (336)
Q Consensus 72 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~-------~~~~~~~~~r~l~g 144 (336)
++.+|+|.+|...+.++..+|..+| ++.|.+.|++|+|.++.++.+...++..+...+ .++|.+.+..++.|
T Consensus 29 k~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~ 107 (250)
T PF06813_consen 29 KSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGG 107 (250)
T ss_pred HHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHc
Confidence 5566999999999999999999875 888999999999999999999999998766542 35677777778888
Q ss_pred hhhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCC
Q 043735 145 FGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPD 224 (336)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e 224 (336)
.+.+...+.......+.||. +||.+.++.-...++++.+-..+...+.+. ..-...+.....+.++..+..++++.
T Consensus 108 ~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~---~~~~fll~la~~~~~v~l~~~~~vr~ 183 (250)
T PF06813_consen 108 NSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGD---DPSSFLLFLAVLPAVVCLVAMFFVRP 183 (250)
T ss_pred ccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCC---ChHHHHHHHHHHHHHHHHHHhhheec
Confidence 87766667777777788984 799999999999999888776665555442 12233333344444444455555554
Q ss_pred Ch
Q 043735 225 TP 226 (336)
Q Consensus 225 ~~ 226 (336)
.|
T Consensus 184 ~~ 185 (250)
T PF06813_consen 184 VP 185 (250)
T ss_pred cC
Confidence 43
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-09 Score=90.89 Aligned_cols=134 Identities=13% Similarity=0.056 Sum_probs=107.0
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHhhhhhhhhh
Q 043735 74 YCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGAL-INGFAQGVWMLIVGRLLLGFGIGFANQ 152 (336)
Q Consensus 74 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~-~~~~~~~~~~~~~~r~l~g~~~~~~~~ 152 (336)
.+|+|+...+-+.+..+.-.++.+++.|.++||+|++-+.+.+.++..+..- ...+ +.+.=.+...+.|+.....-.
T Consensus 294 rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAc 371 (459)
T KOG4686|consen 294 RFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLAC 371 (459)
T ss_pred hhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHH
Confidence 3499999999999999999999999999999999999877776665555442 2222 223334567788888887777
Q ss_pred hHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhH
Q 043735 153 SVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAM 209 (336)
Q Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~ 209 (336)
..+..++...|+++.|++.+..+...++|-.+.|++++.+.+..+++.|.-.|.+..
T Consensus 372 slWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~ 428 (459)
T KOG4686|consen 372 SLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLII 428 (459)
T ss_pred HHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHH
Confidence 788999999999999999999999999999999999999998766555655555433
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.1e-09 Score=109.21 Aligned_cols=134 Identities=14% Similarity=0.133 Sum_probs=113.4
Q ss_pred cCCCc-hhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhH
Q 043735 76 QYNSE-TLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSV 154 (336)
Q Consensus 76 ~~s~~-~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~ 154 (336)
|++.. +.+++.+...++.++++++.|++.||+++|+++.++.++.+++.++..+..+.+.+++..++.|++.+...+..
T Consensus 264 g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 343 (1146)
T PRK08633 264 GLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPL 343 (1146)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 78888 89999999999999999999999999999999988888888888888877888888888999999999888888
Q ss_pred HHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHH
Q 043735 155 PLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVP 211 (336)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~ 211 (336)
..++.+..|++.||+++++.+....+|..+++.+++.+... ..++...+++.+.+
T Consensus 344 ~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~--~~~~~~~~~~~~~~ 398 (1146)
T PRK08633 344 NALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGL--GLSPAGLFYLIALV 398 (1146)
T ss_pred HHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHh--ccCHHHHHHHHHHH
Confidence 99999999999999999999999999988887777666442 13455555544443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-09 Score=98.65 Aligned_cols=120 Identities=12% Similarity=0.071 Sum_probs=99.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhHHhhh-hhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHH
Q 043735 77 YNSETLTLFTSSLYLAALLSSLVASSVTR-KFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVP 155 (336)
Q Consensus 77 ~s~~~~~~~~~~~~~~~~i~~~~~g~l~d-r~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~ 155 (336)
.++.+.+++.+...++...+..+.+++.| |++.|+.+..+.++.+++.++.+..++++.+.+..++.+++.+...+...
T Consensus 240 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~ 319 (400)
T PRK11646 240 GSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARE 319 (400)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHH
Confidence 35677888888877777666666666665 56767777778888888877777778887777778888888888888888
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 043735 156 LYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIK 196 (336)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 196 (336)
.++.|..|+++||+..++++....+|..++|.+.+.+.+..
T Consensus 320 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~ 360 (400)
T PRK11646 320 TLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLG 360 (400)
T ss_pred HHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHH
Confidence 99999999999999999999999999999999999998764
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-09 Score=99.13 Aligned_cols=147 Identities=14% Similarity=0.096 Sum_probs=94.8
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHH---HHHHHHHhh--hhHHHHHHHHHHHhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFF---AGALINGFA--QGVWMLIVGRLLLGFGIGFA 150 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~---i~~~~~~~~--~~~~~~~~~r~l~g~~~~~~ 150 (336)
|.+..+.++......++..++.++.|+++||+|+++....+..+.. ++.+..... .+.+......++.|++....
T Consensus 283 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 362 (438)
T TIGR00712 283 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGP 362 (438)
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccH
Confidence 7888889999999999999999999999999975432222322221 111111121 23333333444555443222
Q ss_pred hhhHHHHhhhcCCCccchhHHHHHHHHHHHHH-HHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhh-cccCCC
Q 043735 151 NQSVPLYLSEMAPYKYRGALNIGFQLSITIGI-LIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGS-LVLPDT 225 (336)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~ 225 (336)
.........|.+|+++|+.+.++.+....+|+ .++|.+.+.+.+. .||...+++..+..+++.+.. +.++|.
T Consensus 363 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (438)
T TIGR00712 363 VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF---FGWDGGFMVMIGGSILAVILLIVVMIGE 436 (438)
T ss_pred HHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHh---ccchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 22223467799999999999999988877764 6799999998874 468888776655544444433 455654
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.5e-10 Score=98.21 Aligned_cols=143 Identities=14% Similarity=0.031 Sum_probs=110.9
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQ-------GVWMLIVGRLLLGFGIG 148 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~-------~~~~~~~~r~l~g~~~~ 148 (336)
+.++.+.+.......+...+..+.+|+++||+|.+|++.+....++++..+..+.. +....++..+..+++.|
T Consensus 250 g~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G 329 (417)
T COG2223 250 GLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAG 329 (417)
T ss_pred CCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999999988777653 33333333444444444
Q ss_pred hhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcc
Q 043735 149 FANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLV 221 (336)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 221 (336)
........++..++|+ +-|.+.++.....++|+..-|...+...+..+ .+...|++.....+++.+..+.
T Consensus 330 ~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg--~~~~~f~~~~~~~~~a~v~~~~ 399 (417)
T COG2223 330 LGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTG--SYTGAFMLLLAFYLVALVLTWA 399 (417)
T ss_pred cCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556666677754 57899999999999999999988888887654 5888888777776666655443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.9e-10 Score=99.54 Aligned_cols=126 Identities=18% Similarity=0.198 Sum_probs=92.4
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhch-hHH-HHHHHHH-HHHHHHHHHh--hhhHHHHHHHHHHHhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGR-KKS-MLFGGVL-FFAGALINGF--AQGVWMLIVGRLLLGFGIGFA 150 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Gr-r~~-l~~~~~~-~~i~~~~~~~--~~~~~~~~~~r~l~g~~~~~~ 150 (336)
|.+..+.+++.+...++..++.++.|++.||.++ |+. +...... ..++...... ..+.....+..++.|+.....
T Consensus 248 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 327 (379)
T TIGR00881 248 GFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGP 327 (379)
T ss_pred CCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhh
Confidence 7888999999999999999999999999998643 332 2222211 1222222222 234455556667777766555
Q ss_pred hhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHH
Q 043735 151 NQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLS 204 (336)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~ 204 (336)
.+....+..|..|+++|+++.++.+....+|..++|.+.+.+.+. .||++.
T Consensus 328 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~ 378 (379)
T TIGR00881 328 QMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADG---FGWAGA 378 (379)
T ss_pred hHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHh---hccccc
Confidence 666677899999999999999999999999999999999999884 467654
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.1e-09 Score=100.11 Aligned_cols=119 Identities=18% Similarity=0.191 Sum_probs=103.8
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHhhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGF----AQGVWMLIVGRLLLGFGIGFAN 151 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~----~~~~~~~~~~r~l~g~~~~~~~ 151 (336)
|.+..+.++......++..++.++.|++.||+|||+++..+.++.+++..+..+ ..+.+.+....++.|++.+...
T Consensus 287 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~ 366 (485)
T TIGR00711 287 GYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFF 366 (485)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999998888888876652 1345666777889999998888
Q ss_pred hhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043735 152 QSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAK 194 (336)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~ 194 (336)
+.......+..|+++|+.+.++.+....+|+.+++.+.+.+.+
T Consensus 367 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 367 MPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred HHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788888999999999999999999999999998887765
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.4e-09 Score=94.18 Aligned_cols=116 Identities=17% Similarity=0.211 Sum_probs=90.5
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFA-----QGVWMLIVGRLLLGFGIGFA 150 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~-----~~~~~~~~~r~l~g~~~~~~ 150 (336)
|.++.+.+++.+...++..++.++.|++.||+|||+.+..+..+..++.++.... ++...+.+..++.|++.+..
T Consensus 238 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 317 (385)
T TIGR00710 238 GVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMI 317 (385)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 7888999999999999999999999999999999999988887777776655443 23445555677888988888
Q ss_pred hhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 043735 151 NQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFF 192 (336)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 192 (336)
.+.......|..| ++|+++.++.+.....++.+.+.+.+..
T Consensus 318 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~ 358 (385)
T TIGR00710 318 SSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLI 358 (385)
T ss_pred HHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888889886 5789999988777655444444444433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-08 Score=93.08 Aligned_cols=120 Identities=18% Similarity=0.170 Sum_probs=97.2
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFA-----QGVWMLIVGRLLLGFGIGFA 150 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~-----~~~~~~~~~r~l~g~~~~~~ 150 (336)
|++..+.++......++..++.++.|++.||+|+|+.+..+.++..++.++.... .+.+.+.+..++.|++.+..
T Consensus 247 g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~ 326 (406)
T PRK15402 247 QLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLA 326 (406)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888999999999999999999999988888777776655543 24556677788899988887
Q ss_pred hhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 043735 151 NQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIK 196 (336)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 196 (336)
.+......... ++++||+..+.++....+|..+++.+.+.+.+..
T Consensus 327 ~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 371 (406)
T PRK15402 327 NAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGG 371 (406)
T ss_pred hhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 76665554433 4588999999999999999999999999887643
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.3e-09 Score=92.02 Aligned_cols=173 Identities=9% Similarity=-0.014 Sum_probs=118.8
Q ss_pred HhhhhHHHHHHHHHHHhhhhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccC----------
Q 043735 128 GFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKG---------- 197 (336)
Q Consensus 128 ~~~~~~~~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~---------- 197 (336)
+...+++.++++.++.|.|.+..++....++++.-+++++++.+++.+...++|..++|.+.+.+.....
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 3457899999999999999999999999999999999999999999999999999999999998774210
Q ss_pred ---CchhHHHHhhhHHHHHHHHHhhcc--cCCChHHHHhcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccch
Q 043735 198 ---GWGWRLSLGGAMVPALIITIGSLV--LPDTPNSMIERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPW 272 (336)
Q Consensus 198 ---~~~w~~~~~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (336)
...|++++++.+...++..+.+.+ +||.++ ++++ + . .+ ++ ..+.
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~~~~----------------~-----~-~~--~~-~~~~ 133 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------ADVA----------------R-----V-SS--GD-TTQK 133 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------cccc----------------c-----c-cc--cc-ccch
Confidence 136888888665554443333333 344220 0000 0 0 00 00 0000
Q ss_pred hhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHHHh---cCCCCcHHHHHHHHHhHhhheec
Q 043735 273 GNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFNT---IGFGNDASLMSAVITGLVNACAT 335 (336)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~G~s~~~~~~~~~~~~~~~~~~~ 335 (336)
++.++ ++..+...+..++..........|.+.++++ .|++..+++...+......++|+
T Consensus 134 ~~~~~----~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr 195 (310)
T TIGR01272 134 TSAFQ----FTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGR 195 (310)
T ss_pred hhHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 11222 2234444555666666677888999999964 48999999998888888777664
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.7e-09 Score=94.73 Aligned_cols=155 Identities=21% Similarity=0.213 Sum_probs=117.4
Q ss_pred ccccchhhHHhhhccchhhhcccCCCCcccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhh--chhHHHHHH-HHHHH
Q 043735 45 GGVTSMPSFLKRFFPSVYRKQQANSSTNQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKF--GRKKSMLFG-GVLFF 121 (336)
Q Consensus 45 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--Grr~~l~~~-~~~~~ 121 (336)
+..-+.|.|+.+.. |+|..++++..+.+-++...|.+++|+++||+ |||....+. +++..
T Consensus 270 gi~dW~p~YL~e~k-----------------~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~ 332 (448)
T COG2271 270 GINDWGPLYLSEVK-----------------GFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLIT 332 (448)
T ss_pred HHhhhHHHHHHHhc-----------------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 33456777776642 88999999999999999999999999999987 777655443 33344
Q ss_pred HHHHHHHhhh--hHHHHHHHHHHHhhhhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHH-HHHHHHHHHHHhhcccCC
Q 043735 122 AGALINGFAQ--GVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITI-GILIANVLNYFFAKIKGG 198 (336)
Q Consensus 122 i~~~~~~~~~--~~~~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~~~~~~~~ 198 (336)
++.+..-.++ |++...++.+..|+..-+..-.......|..|++--|.+.|+...+.-+ |...+....+.+.+.
T Consensus 333 ~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~--- 409 (448)
T COG2271 333 ASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT--- 409 (448)
T ss_pred HHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec---
Confidence 4444444444 4578888889999877666677777889999999999999999998888 777777777777663
Q ss_pred chhHHHHhhhHHHHHHHHHhh
Q 043735 199 WGWRLSLGGAMVPALIITIGS 219 (336)
Q Consensus 199 ~~w~~~~~~~~~~~~~~~~~~ 219 (336)
+||...|++..+.++++.+..
T Consensus 410 ~gW~g~Fi~~~~~a~l~~lll 430 (448)
T COG2271 410 WGWDGGFIVLSIAALLAILLL 430 (448)
T ss_pred CCCcchHHHHHHHHHHHHHHH
Confidence 679888887666666555544
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.9e-09 Score=93.97 Aligned_cols=140 Identities=12% Similarity=0.049 Sum_probs=92.2
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhch---hHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGR---KKSMLF-GGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFAN 151 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Gr---r~~l~~-~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~ 151 (336)
|++.+ .+...++..+...++ .++++||.+| |+.... ..++.++......+..+....++.-.+.+++....+
T Consensus 223 g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (368)
T TIGR00903 223 GLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAY 298 (368)
T ss_pred CCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhH
Confidence 55543 456666655555555 4677777654 333332 333344444444444444444555566777777777
Q ss_pred hhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCC
Q 043735 152 QSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPD 224 (336)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e 224 (336)
+....+.+|.+|++.|+++.++.+....+|+..+|++.+.+.. +.+..|.+.+++.++..+....+++
T Consensus 299 ~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-----~~~~~f~~~~~~~~i~~~~~~~~~~ 366 (368)
T TIGR00903 299 AIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS-----SAEAYFTFLAILITIAFAIALLLPN 366 (368)
T ss_pred HHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8788999999999999999999999999999999988877763 4556666666666555555444444
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.2e-09 Score=93.96 Aligned_cols=139 Identities=12% Similarity=0.131 Sum_probs=99.9
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHhhhhhhhhhhH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGF-AQGVWMLIVGRLLLGFGIGFANQSV 154 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~-~~~~~~~~~~r~l~g~~~~~~~~~~ 154 (336)
|.+..+.+++.+...++..++.++.|++.||+|+|+.+..+..+..++.+.... .++.+...+..++.+++.....+..
T Consensus 231 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 310 (382)
T PRK10091 231 GFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPL 310 (382)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHH
Confidence 888999999999999999999999999999999999999888887777755543 4455555566666666654444433
Q ss_pred H-HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHh
Q 043735 155 P-LYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIG 218 (336)
Q Consensus 155 ~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 218 (336)
. ....+..+++.++.. ..+....+|..++|.+++.+.+.. .+|++.+...++..++....
T Consensus 311 ~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~--~~~~~~~~~~~~~~~~~~~~ 371 (382)
T PRK10091 311 QILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLG--LAYNYVALPAALLSFAAMSS 371 (382)
T ss_pred HHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcc--cCcchHHHHHHHHHHHHHHH
Confidence 3 344444454445544 345677899999999999988753 35777777666555444433
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.2e-08 Score=90.37 Aligned_cols=228 Identities=19% Similarity=0.185 Sum_probs=144.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHH-HHHHHHHHHHHHHhh-h-hHHHHHHHHHHHhhhhhhhhhhHHHH
Q 043735 81 TLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLF-GGVLFFAGALINGFA-Q-GVWMLIVGRLLLGFGIGFANQSVPLY 157 (336)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~-~~~~~~i~~~~~~~~-~-~~~~~~~~r~l~g~~~~~~~~~~~~~ 157 (336)
..++..++..+..++..++.|.++|+-|+||.++. ...+..+++.+..+. + +++...+..++..++.+.......++
T Consensus 71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~ 150 (477)
T PF11700_consen 71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY 150 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888899999999999999999987765554 445555566555553 3 45555555666667888888888999
Q ss_pred hhhcCCCccc--------------------------hhHHHHHHHHHHHHHHHHHHHHHHhhcccC-----CchhHHHHh
Q 043735 158 LSEMAPYKYR--------------------------GALNIGFQLSITIGILIANVLNYFFAKIKG-----GWGWRLSLG 206 (336)
Q Consensus 158 ~~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~-----~~~w~~~~~ 206 (336)
+.|+.+++.+ ++..+.-...+.+|+++.-.+...+....+ ..+.|..+.
T Consensus 151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~ 230 (477)
T PF11700_consen 151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFL 230 (477)
T ss_pred hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHH
Confidence 9999999888 888888777777888776666554432221 134577776
Q ss_pred hhHHHHHHH-HHhhcccCCChHHHHhcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHH
Q 043735 207 GAMVPALII-TIGSLVLPDTPNSMIERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLT 285 (336)
Q Consensus 207 ~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (336)
+.++.-++. ....+++||.|+....+.......... + ..++.+|+.++.+..
T Consensus 231 ~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~-----------------------~----~l~~t~k~~~~~~~~ 283 (477)
T PF11700_consen 231 IVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGF-----------------------K----RLWRTFKEIRKLRQL 283 (477)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHH-----------------------H----HHHHHHHHHHhChHH
Confidence 666654333 334456787763100000000000000 0 011122222223344
Q ss_pred HHHHHHHHHHhhchhHHHHcHHHHHH-hcCCCCcHHHHHHHHHhHhhheec
Q 043735 286 MAILIPFFQQLTGINVIMFYAPVLFN-TIGFGNDASLMSAVITGLVNACAT 335 (336)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~s~~~~~~~~~~~~~~~~~~~ 335 (336)
..+++.+++..-+...+......+.+ .+|++..+......+..+.+++|+
T Consensus 284 ~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga 334 (477)
T PF11700_consen 284 FLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGA 334 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHH
Confidence 55566666655666777777777775 689999998888888888777664
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.8e-09 Score=99.52 Aligned_cols=119 Identities=14% Similarity=0.070 Sum_probs=103.9
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHhhhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFA---QGVWMLIVGRLLLGFGIGFANQ 152 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~---~~~~~~~~~r~l~g~~~~~~~~ 152 (336)
|.|..+.+.......++..++.++.|++.||+|||+++..+.++..++.++.... ++.+......++.|++.|...+
T Consensus 291 g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~ 370 (495)
T PRK14995 291 GLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALL 370 (495)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHH
Confidence 8899999999999999999999999999999999999988888887777655432 3555666778899999999888
Q ss_pred hHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043735 153 SVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAK 194 (336)
Q Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~ 194 (336)
.....+.+..|+++++.+.+.++....+|+.+|+.+.+.+.+
T Consensus 371 ~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 371 ASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999999999999999999999999988887754
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2e-09 Score=97.92 Aligned_cols=133 Identities=8% Similarity=-0.064 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHH-hh-----hhHHHHHHHHHHHhhhhhhhhhhHHHHhh
Q 043735 86 TSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALING-FA-----QGVWMLIVGRLLLGFGIGFANQSVPLYLS 159 (336)
Q Consensus 86 ~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~-~~-----~~~~~~~~~r~l~g~~~~~~~~~~~~~~~ 159 (336)
..+..+...+..+++|+++||+|+|+++.++.+...++..... .. .+++.+.+..+...++.|........++.
T Consensus 292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip 371 (462)
T PRK15034 292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIA 371 (462)
T ss_pred HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhH
Confidence 4445677888999999999999999999998887777764322 12 24555555554544555555556666777
Q ss_pred hcCCC---------------------ccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHh
Q 043735 160 EMAPY---------------------KYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIG 218 (336)
Q Consensus 160 ~~~~~---------------------~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 218 (336)
+.+|+ ++-|.+.++......+|+.+.|.+.+...+..+ ++...++...+.-+++.++
T Consensus 372 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g--~~~~~~~~~~~~~~~~~~~ 449 (462)
T PRK15034 372 VIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTG--SPVGAMKVFLIFYIVCVLL 449 (462)
T ss_pred HHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHH
Confidence 77764 134678889999999999999988887776654 4666676666655555544
Q ss_pred hc
Q 043735 219 SL 220 (336)
Q Consensus 219 ~~ 220 (336)
.+
T Consensus 450 ~w 451 (462)
T PRK15034 450 TW 451 (462)
T ss_pred HH
Confidence 44
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-09 Score=100.29 Aligned_cols=146 Identities=18% Similarity=0.172 Sum_probs=130.5
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhc--hhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFG--RKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQS 153 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G--rr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~ 153 (336)
+.+..+.+.+.++..+.-.++.+..|+++|+.. ++.+..++++..+++.+.+.+.++++.++..-.+.|++.|.....
T Consensus 329 g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l 408 (509)
T KOG2504|consen 329 GLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSL 408 (509)
T ss_pred CCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999987 566777888888888888999999999999999999999999888
Q ss_pred HHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccC
Q 043735 154 VPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLP 223 (336)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 223 (336)
...++.|..+.++-..+.++......++.+++|++++.+.+..+ +|...|+..++..+++.++++..|
T Consensus 409 ~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg--~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 409 TPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG--NYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC--CeeeehhhcChHHHHHHHHHHHhH
Confidence 88999999999999999999999999999999999998888655 477788888877777776666655
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.4e-09 Score=106.81 Aligned_cols=133 Identities=13% Similarity=0.067 Sum_probs=108.5
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhh--------------------hhHHH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFA--------------------QGVWM 135 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~--------------------~~~~~ 135 (336)
|.+..+.+++.+.+.++.++++++.|+++|+.++++.+..+.++.+++.+...+. .+.+.
T Consensus 257 g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1140)
T PRK06814 257 GGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWR 336 (1140)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHH
Confidence 8889999999999999999999999999998888777666666665555444432 56677
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHH
Q 043735 136 LIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMV 210 (336)
Q Consensus 136 ~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~ 210 (336)
+++..++.|++.+...+...+++.+..|++.||++++..++...+|..+++++.+.+.... .++...+++.++
T Consensus 337 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~--~~~~~~~~~~~~ 409 (1140)
T PRK06814 337 ILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALG--FSIPWIILFIAL 409 (1140)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhc--cCHHHHHHHHHH
Confidence 7888899999999999999999999999999999999999999999999999988886432 245555544333
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.3e-08 Score=90.46 Aligned_cols=120 Identities=15% Similarity=0.200 Sum_probs=96.5
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHhhhhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQ--GVWMLIVGRLLLGFGIGFANQS 153 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~r~l~g~~~~~~~~~ 153 (336)
|.+....++......++..++.++++++.||+|+|+++.++.++..++.+...+.+ +.+.+.+..++.|+|.+...+.
T Consensus 260 g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~ 339 (448)
T PRK09848 260 NDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTV 339 (448)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 54544444545555677888999999999999999999999988888877666543 5666777788899999999999
Q ss_pred HHHHhhhcCCCc-------cchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 043735 154 VPLYLSEMAPYK-------YRGALNIGFQLSITIGILIANVLNYFFAKI 195 (336)
Q Consensus 154 ~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 195 (336)
..++.+|..|.+ ++|...+.++....+|..+++.+.+.+.+.
T Consensus 340 ~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~ 388 (448)
T PRK09848 340 MWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL 388 (448)
T ss_pred HHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988754 348888999999999999999988877654
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.6e-09 Score=96.90 Aligned_cols=116 Identities=13% Similarity=0.161 Sum_probs=77.1
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhh----chhHHH-HHHHHHHHHHHHHHHhhh-------hHHHHHHHHHH
Q 043735 75 CQYNSETLTLFTSSLYLAALLSSLVASSVTRKF----GRKKSM-LFGGVLFFAGALINGFAQ-------GVWMLIVGRLL 142 (336)
Q Consensus 75 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~----Grr~~l-~~~~~~~~i~~~~~~~~~-------~~~~~~~~r~l 142 (336)
+|++..++|.+.++..+..++..++.|+++||. |||+.. .++.+...+..++....+ ......+..++
T Consensus 39 ~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (448)
T PRK09848 39 AGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMG 118 (448)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHH
Confidence 389999999999999999999999999999996 777644 555555554444332111 12233444567
Q ss_pred HhhhhhhhhhhHHHHhhhcCC-CccchhHHHHHHHHHH-----HHHHHHHHHHH
Q 043735 143 LGFGIGFANQSVPLYLSEMAP-YKYRGALNIGFQLSIT-----IGILIANVLNY 190 (336)
Q Consensus 143 ~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~-----~g~~~~~~l~~ 190 (336)
.+++.+...+...++..|..+ +++|.+..+.-..+.+ ++..++|.+..
T Consensus 119 ~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~ 172 (448)
T PRK09848 119 LGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKN 172 (448)
T ss_pred HHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777654 4678877665544333 44445555544
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.9e-08 Score=88.15 Aligned_cols=149 Identities=17% Similarity=0.260 Sum_probs=115.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhh-hhHHHHHHH----HHHHhhhhhhhh
Q 043735 77 YNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFA-QGVWMLIVG----RLLLGFGIGFAN 151 (336)
Q Consensus 77 ~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~-~~~~~~~~~----r~l~g~~~~~~~ 151 (336)
.+....+.+.++..++-.+.-...+++..|+|.|+++.++.+.+++=..+.+.. ++.+...+. ..+.|+..+...
T Consensus 240 ~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~ 319 (400)
T PF03825_consen 240 YSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFH 319 (400)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHH
Confidence 566677777788888888999999999999999999999999999988888876 454443333 456999999999
Q ss_pred hhHHHHhhhcCCCccchhHHHHHHH-HHHHHHHHHHHHHHHhhcccCC---chhHHHHhhhHHHHHHHHHhh-cccCCC
Q 043735 152 QSVPLYLSEMAPYKYRGALNIGFQL-SITIGILIANVLNYFFAKIKGG---WGWRLSLGGAMVPALIITIGS-LVLPDT 225 (336)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~l~~~~~~~~~~---~~w~~~~~~~~~~~~~~~~~~-~~~~e~ 225 (336)
.....++.+..|++.|+++.++++. ..++|..++..++|++.+..+. ..|...+.+.++..++..+.. ++.+|+
T Consensus 320 ~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 320 AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 9999999999999999999998776 4789999999999999885441 235555555555544443333 344543
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.4e-09 Score=94.62 Aligned_cols=104 Identities=14% Similarity=0.142 Sum_probs=88.0
Q ss_pred cCCCchhHHHHHHHH-HHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhh-----------hhHHHHHHHHHHH
Q 043735 76 QYNSETLTLFTSSLY-LAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFA-----------QGVWMLIVGRLLL 143 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~-~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~-----------~~~~~~~~~r~l~ 143 (336)
|++.++.+.+.++.. ++..++.+++|++.||+|||+.+..+.++..+...+..+. ++.+.+....++.
T Consensus 240 g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 319 (356)
T TIGR00901 240 GFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLE 319 (356)
T ss_pred CCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHH
Confidence 889999988887665 6788999999999999999999988888887776654442 3456777788899
Q ss_pred hhhhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHH
Q 043735 144 GFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSIT 179 (336)
Q Consensus 144 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 179 (336)
+++.+...+...+++.|.+|+++||+..++++...+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 320 AVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 999999999999999999999999999998877654
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.8e-09 Score=93.73 Aligned_cols=134 Identities=7% Similarity=-0.005 Sum_probs=106.6
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHhhhhhhhhhhH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFA-QGVWMLIVGRLLLGFGIGFANQSV 154 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~-~~~~~~~~~r~l~g~~~~~~~~~~ 154 (336)
+.+....+.+.....+.....+++.|++.||+++|+.+..+..+..++.....+. ++.+.+.+..++.|++.+...|..
T Consensus 240 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~ 319 (395)
T PRK10054 240 DFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGE 319 (395)
T ss_pred chHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4556667778888877777888899999999999999999988888887666654 567767778889999988888888
Q ss_pred HHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHH
Q 043735 155 PLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPAL 213 (336)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~ 213 (336)
..++.+..|++.|++..+..+ ...+|..++|.+++.+.+.. |....+++.+....
T Consensus 320 ~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~---g~~~~~~~~~~~~~ 374 (395)
T PRK10054 320 YMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTL---PPWSLFVILALAIV 374 (395)
T ss_pred HHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHc---ChhhHHHHHHHHHH
Confidence 889999999999999888655 56689999999999999854 45556655444433
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.6e-08 Score=93.87 Aligned_cols=118 Identities=8% Similarity=0.112 Sum_probs=92.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHhhhhhhhhh
Q 043735 78 NSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGF-----AQGVWMLIVGRLLLGFGIGFANQ 152 (336)
Q Consensus 78 s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~-----~~~~~~~~~~r~l~g~~~~~~~~ 152 (336)
+.+..+++.+...++..++.+++++++||+|+|+.+.++.++.+++.+.... .++.+.+++.-++.|++.+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777777888999999999999999999999888776666654432 24566667777888999999999
Q ss_pred hHHHHhhhcCCC-----cc--chhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 043735 153 SVPLYLSEMAPY-----KY--RGALNIGFQLSITIGILIANVLNYFFAKI 195 (336)
Q Consensus 153 ~~~~~~~~~~~~-----~~--r~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 195 (336)
...++++|..+. .+ .|...+......-+|..+++.+.+++.+.
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~ 393 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGL 393 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999662 22 36688889999999999999999888754
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.7e-08 Score=90.01 Aligned_cols=138 Identities=22% Similarity=0.253 Sum_probs=82.7
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHH--HH-HHHHhhh----hHH-HHHHHHHHHhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFA--GA-LINGFAQ----GVW-MLIVGRLLLGFGI 147 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i--~~-~~~~~~~----~~~-~~~~~r~l~g~~~ 147 (336)
|+|.+++|.+.++..+...+.+++.|.++||.|.||-+++......+ +. +...+.+ |.+ ..+++-...|+..
T Consensus 39 GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f 118 (412)
T PF01306_consen 39 GLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVF 118 (412)
T ss_dssp ---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999977766544333222 22 2222222 222 2233334445555
Q ss_pred hhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhh
Q 043735 148 GFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGS 219 (336)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 219 (336)
.+..++.-+++.++. ++.+.=.|-.-+.+++|.+++..++|.+.+. +-...+++....+++..++.
T Consensus 119 ~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i----~p~~~fwi~s~~~~il~lll 184 (412)
T PF01306_consen 119 NAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI----NPNIIFWIASAAAIILLLLL 184 (412)
T ss_dssp TTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee----CccHHHHHHHHHHHHHHHHH
Confidence 555666656554443 1224444556667778888888888887763 33456665555444443333
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.4e-09 Score=94.82 Aligned_cols=131 Identities=21% Similarity=0.269 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhh--hhhhhhhHHHHhhhcCCCc
Q 043735 88 SLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFG--IGFANQSVPLYLSEMAPYK 165 (336)
Q Consensus 88 ~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~--~~~~~~~~~~~~~~~~~~~ 165 (336)
...+...+.++..|.++||+|||..+.+..+...+..++..+.. +|.++ +.++. .+.......++++|....+
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~ 144 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEE 144 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchh
Confidence 44677788999999999999999999999999999888777766 33333 44442 3456677789999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhh-cccCCCh
Q 043735 166 YRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGS-LVLPDTP 226 (336)
Q Consensus 166 ~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~ 226 (336)
+|....++.+.....+..++|.+++.+.+. .|.-..+.+..+..++..+.. +++||+.
T Consensus 145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~~---~~~a~~f~ia~~~~~~~~~y~~~~l~Esl 203 (463)
T KOG2816|consen 145 ERSSSIGLLSGTFGAGLVIGPALGGYLVKF---LGIALVFLIAAASGILSLLYMLLFLPESL 203 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHh---cCchHHHHHHHHHHHHHHHHHhhcccccc
Confidence 999999999999999999999999999885 456667777666666555544 5788875
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.9e-08 Score=88.35 Aligned_cols=231 Identities=14% Similarity=0.124 Sum_probs=141.6
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhc-----hhHHHHH-HHHHHHHHHHHHHhh-----h--------h
Q 043735 72 NQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFG-----RKKSMLF-GGVLFFAGALINGFA-----Q--------G 132 (336)
Q Consensus 72 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G-----rr~~l~~-~~~~~~i~~~~~~~~-----~--------~ 132 (336)
..|+++...-.+.+.++.++... ..+.+|..+|+.+ ||..+++ +.++...+..+..++ . .
T Consensus 7 IvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~ 85 (403)
T PF03209_consen 7 IVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPF 85 (403)
T ss_pred HHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccccc
Confidence 34567887777888777776655 5889999999999 7765554 555555555444331 2 1
Q ss_pred -H--HHHHHHHHHHhhhhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhH
Q 043735 133 -V--WMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAM 209 (336)
Q Consensus 133 -~--~~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~ 209 (336)
. ....+...+.|+|.+...+...+++.|..|+++|+++.++......+|.+++..+.+.+.+.++...-...+...+
T Consensus 86 ~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a 165 (403)
T PF03209_consen 86 WLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVA 165 (403)
T ss_pred HHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHH
Confidence 1 2345556789999999999999999999999999999999999999999999999988877433111122222222
Q ss_pred HHHHHHHHhhcccCCChHHHHhcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHH
Q 043735 210 VPALIITIGSLVLPDTPNSMIERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAIL 289 (336)
Q Consensus 210 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (336)
++.+...++..+-.|.++.... +.+++++.+....++++.+++..++.+..+.
T Consensus 166 ~i~~~l~~ia~wg~E~r~~~~~---------------------------~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~ 218 (403)
T PF03209_consen 166 LIALLLNLIALWGQEPRRSRRA---------------------------AAAERPRPPFREAWRQVWASPQARRFFVFLF 218 (403)
T ss_pred HHHHHHHHHHHHhcccCCcccc---------------------------cCCCCCCccHHHHHHHHHhCCChhHHHHHHH
Confidence 2222222223333343211000 0001111122334566666666666555554
Q ss_pred HHHHHHhhchhHHHHcH-HHHHHhcCCCCcHHHHHHHHHhHhhhee
Q 043735 290 IPFFQQLTGINVIMFYA-PVLFNTIGFGNDASLMSAVITGLVNACA 334 (336)
Q Consensus 290 ~~~~~~~~~~~~~~~~~-~~~~~~~G~s~~~~~~~~~~~~~~~~~~ 334 (336)
+..... ......+ |+=-+-+|++..++..++...+.+.++|
T Consensus 219 l~t~a~----~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G 260 (403)
T PF03209_consen 219 LGTLAF----FMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLG 260 (403)
T ss_pred HHHHHH----HhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 433222 2222222 3333457999999988888888776654
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.1e-08 Score=88.65 Aligned_cols=138 Identities=13% Similarity=0.146 Sum_probs=96.6
Q ss_pred cCCCchhHHHHHHH-HHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHH---Hhh-hhHHHHHHHHH----HHhhh
Q 043735 76 QYNSETLTLFTSSL-YLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALIN---GFA-QGVWMLIVGRL----LLGFG 146 (336)
Q Consensus 76 ~~s~~~~~~~~~~~-~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~---~~~-~~~~~~~~~r~----l~g~~ 146 (336)
|++.++.+++.... .++..++.+++|++.||+|||+.+..+.++..+..+.. +.. ++.+.+.+.-+ ..|++
T Consensus 241 G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 320 (402)
T PRK11902 241 GFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMG 320 (402)
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 88889999988665 45689999999999999999998877776666554333 333 34455554443 45555
Q ss_pred hhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhc
Q 043735 147 IGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSL 220 (336)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (336)
.+...+....++.+.+|.+++ +.++...++|..+++.+++.+.+. .||+..|...++.+++..+..+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~---~G~~~~f~~~~~~~~~~~~~~~ 387 (402)
T PRK11902 321 TAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEA---YGWPGFYLMTVVIALPGLALLW 387 (402)
T ss_pred HHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHH---hChHHHHHHHHHHHHHHHHHHH
Confidence 666677777777777776554 444445566776666788888874 5799999888777766655543
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.2e-08 Score=87.80 Aligned_cols=118 Identities=11% Similarity=0.018 Sum_probs=97.6
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVP 155 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~ 155 (336)
|.++.+.+++.+...++..++++..+++.||.++|+++..+. +.++......+.++++...+..++.|++.+...+...
T Consensus 237 g~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~ 315 (393)
T PRK11195 237 GITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMN 315 (393)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 888999999999999999999999999999999998887775 3444444455566777777778889998888887778
Q ss_pred HHhhhcCCCcc-chhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043735 156 LYLSEMAPYKY-RGALNIGFQLSITIGILIANVLNYFFAK 194 (336)
Q Consensus 156 ~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~l~~~~~~ 194 (336)
+.+.|..|++. +|++.++.+...+++..++..+.+.+..
T Consensus 316 ~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~ 355 (393)
T PRK11195 316 ALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVK 355 (393)
T ss_pred HHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 88888766654 7999999999999999999988886654
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.8e-08 Score=88.16 Aligned_cols=235 Identities=11% Similarity=0.117 Sum_probs=149.4
Q ss_pred cCCCchhH-HHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhH
Q 043735 76 QYNSETLT-LFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSV 154 (336)
Q Consensus 76 ~~s~~~~~-~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~ 154 (336)
|++..|+. -+.-...-.+....++...+.|..|.|++++++.+...+...+..+.++...+-+..+..|++.+. ..+.
T Consensus 36 n~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-evay 114 (412)
T PF01770_consen 36 NFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVAY 114 (412)
T ss_pred CCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHH
Confidence 66766653 333444445677788899999999999999999999999999999999999999999999998776 5667
Q ss_pred HHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCCChHHHHhcCC
Q 043735 155 PLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQ 234 (336)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 234 (336)
.+++....|+++-.++.+....+.-+|..++..++-.+.... ...++....+......++.+..+++|..++...-+++
T Consensus 115 ~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~-~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~ 193 (412)
T PF01770_consen 115 YSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFG-GVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHRK 193 (412)
T ss_pred HHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceecc
Confidence 788888888888888898888888888888888777666533 2456666666555555666666788876654322222
Q ss_pred hHHHHHHHHHHcCC--CcchHHHHHHHHHHHhc-cccccchhhh---ccccchhHHHHHHHHHHHHHhhchhHHHHcHHH
Q 043735 235 RDEAREKLRKIRGV--NDVDEEFNDLVAASEAS-KQVEHPWGNL---LKRKYRPHLTMAILIPFFQQLTGINVIMFYAPV 308 (336)
Q Consensus 235 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (336)
..+..+. ++...+ ++.+++.++.+++.+.. ...+...+.+ ++....++..+...+.+....++++.+..|...
T Consensus 194 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~ 272 (412)
T PF01770_consen 194 PPAEQDA-NESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQS 272 (412)
T ss_pred Ccccccc-ccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1111100 000000 00000000000000000 0001111112 223344455667777788888888888888888
Q ss_pred HHHhc
Q 043735 309 LFNTI 313 (336)
Q Consensus 309 ~~~~~ 313 (336)
+.++.
T Consensus 273 LW~~v 277 (412)
T PF01770_consen 273 LWDTV 277 (412)
T ss_pred HHHhc
Confidence 87666
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.7e-09 Score=92.87 Aligned_cols=132 Identities=19% Similarity=0.098 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHHHHhhhcCCCccch
Q 043735 89 LYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRG 168 (336)
Q Consensus 89 ~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~~r~ 168 (336)
..+....|.++.+++.||+|||+.+..+.++++++.++...+.+.....+.-+..-++..+.+.+++.|..|.+|.+.|+
T Consensus 390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRa 469 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRA 469 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhh
Confidence 44566788999999999999999999999999999988887765444444444444445556778899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCCC
Q 043735 169 ALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDT 225 (336)
Q Consensus 169 ~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~ 225 (336)
.+.|.-.....+|+++.|+++ ...+. .-.....+.+...+++.+...++|-.
T Consensus 470 tgvGtcSsmaRIggI~~p~iA-~~~e~----s~sl~i~vy~~~~ilagIavcffPiE 521 (528)
T KOG0253|consen 470 TGVGTCSSMARIGGIFSPVIA-MRAEL----STSLPIFVYGALFILAGIAVCFFPIE 521 (528)
T ss_pred cchhhhhhHHhhhhhhhhHHH-HHhcc----ceeehHHHHHHHHHHHHHHheeeeec
Confidence 999999999999999999998 22221 12233334445555566666666543
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.5e-08 Score=88.11 Aligned_cols=129 Identities=11% Similarity=-0.002 Sum_probs=101.6
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhH
Q 043735 75 CQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSV 154 (336)
Q Consensus 75 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~ 154 (336)
+|+++.+.++....+.++..++.++.|++.||+|||+++..+.++.++..++..+.++.+ ..+...+.|++.+..+|..
T Consensus 290 ~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~P~~ 368 (438)
T PRK10133 290 PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQYPTI 368 (438)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999999999999999999999988887777766665555533 2456778999999999999
Q ss_pred HHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCch-hHHHHhhhH
Q 043735 155 PLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWG-WRLSLGGAM 209 (336)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~-w~~~~~~~~ 209 (336)
.+...|..+++ .+.+.++..+ ..+|+.++|.+.+.+.+. .| -+..|++..
T Consensus 369 ~s~a~~~~~~~-~~~as~l~~~-~~~g~~~~~~i~G~l~~~---~g~~~~~~~v~~ 419 (438)
T PRK10133 369 FSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVMGFVSDA---AGNIPTAELIPA 419 (438)
T ss_pred HHHHHcccchh-hccchhHHhH-HhccchHHHHHHHHHHHh---ccchHHHHHHHH
Confidence 99999988764 4666666654 446788888888888774 33 566665433
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.5e-07 Score=81.12 Aligned_cols=142 Identities=20% Similarity=0.148 Sum_probs=112.9
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhh-chhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKF-GRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSV 154 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~ 154 (336)
|+|..+.|++.+...+.....++....+++|. ++|+......+++.++.+.+.+.+....+.- -++.|++.|..++.+
T Consensus 239 G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~la 317 (395)
T COG2807 239 GLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLA 317 (395)
T ss_pred CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHH
Confidence 99999999999999999999999999999965 6788888888888888887777664333322 489999999999999
Q ss_pred HHHhhhcCCCccc-hhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhc
Q 043735 155 PLYLSEMAPYKYR-GALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSL 220 (336)
Q Consensus 155 ~~~~~~~~~~~~r-~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (336)
...+.+-.+..++ +...++.+...-+=..++|.+.+++.+..+ +|+...+......+...+.-+
T Consensus 318 L~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g--sw~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 318 LTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG--SWSAPLVLLALATLLMLIFGL 382 (395)
T ss_pred HHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC--ChHHHHHHHHHHHHHHHHHHh
Confidence 9999888766555 566667777777778889999999999876 788877766666555444433
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.9e-08 Score=88.17 Aligned_cols=111 Identities=25% Similarity=0.405 Sum_probs=96.7
Q ss_pred cCC-CchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHhhhhhhhh
Q 043735 76 QYN-SETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQ---GVWMLIVGRLLLGFGIGFAN 151 (336)
Q Consensus 76 ~~s-~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~---~~~~~~~~r~l~g~~~~~~~ 151 (336)
|.+ ..+.+.+.+...++..++.++.|++.||+|+|+..........+..+...... +.....+..++.|++.+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 317 (352)
T PF07690_consen 238 GFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVF 317 (352)
T ss_dssp HCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 778 68889999999999999999999999999998888877777777776665433 45666777888999999999
Q ss_pred hhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHH
Q 043735 152 QSVPLYLSEMAPYKYRGALNIGFQLSITIGILIAN 186 (336)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 186 (336)
+....++.|..|+++||++.++.+...++|..++|
T Consensus 318 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 318 PILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999887
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.8e-08 Score=87.48 Aligned_cols=113 Identities=15% Similarity=0.209 Sum_probs=77.5
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVP 155 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~ 155 (336)
|++..+.+.+.+...++..++.++.+++.||+|||+++..+.++..++.+...+.++.+.......+.+.+.+...+.
T Consensus 235 g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~-- 312 (392)
T PRK10473 235 GFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGV-- 312 (392)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--
Confidence 788888899999999999999999999999999999999999888888877776665554444444545444443333
Q ss_pred HHhhhcCCCccc-hhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043735 156 LYLSEMAPYKYR-GALNIGFQLSITIGILIANVLNYFFAK 194 (336)
Q Consensus 156 ~~~~~~~~~~~r-~~~~~~~~~~~~~g~~~~~~l~~~~~~ 194 (336)
....+..|.++| +.+.+... ++..+++.+++++.+
T Consensus 313 ~~~~~~~~~~~~~g~~~~~~~----~~~~~g~~~~~~l~~ 348 (392)
T PRK10473 313 AMSQALGPFSLRAGVASSTLG----IAQVCGSSLWIWLAA 348 (392)
T ss_pred HHHHHhccCcccccHHHHHHH----HHHHHHHHHHHHHHH
Confidence 233445555555 34444444 444455555555554
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.1e-07 Score=87.63 Aligned_cols=145 Identities=17% Similarity=0.273 Sum_probs=114.1
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhHHhhhh-hchhHHHHHHHHHHHHHHHHHHhhhh--------HHHHHHHHHHHhh
Q 043735 75 CQYNSETLTLFTSSLYLAALLSSLVASSVTRK-FGRKKSMLFGGVLFFAGALINGFAQG--------VWMLIVGRLLLGF 145 (336)
Q Consensus 75 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~--------~~~~~~~r~l~g~ 145 (336)
+|++.+.+..+...+.....+..+++|+++|+ +||++.+.++.++..++.++.++... ....+++-.+..+
T Consensus 18 lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~ 97 (654)
T TIGR00926 18 LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIAL 97 (654)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHh
Confidence 37888888888888888888999999999995 69999999999999999877766421 1235566778888
Q ss_pred hhhhhhhhHHHHhhhcCCCcc---chhHHHHHHHHHHHHHHHHHHHHHHhhcccC----CchhHHHHhhhHHHHHHHHHh
Q 043735 146 GIGFANQSVPLYLSEMAPYKY---RGALNIGFQLSITIGILIANVLNYFFAKIKG----GWGWRLSLGGAMVPALIITIG 218 (336)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~----~~~w~~~~~~~~~~~~~~~~~ 218 (336)
|.|+.-+...+...|.+++++ |.....++..+.++|+.+++.+..++.+..+ ..+|...|.+.++..+++.+.
T Consensus 98 G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv 177 (654)
T TIGR00926 98 GTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV 177 (654)
T ss_pred hccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence 899999999999999997643 5677888999999999999999988874321 236888888777666555544
Q ss_pred h
Q 043735 219 S 219 (336)
Q Consensus 219 ~ 219 (336)
.
T Consensus 178 f 178 (654)
T TIGR00926 178 F 178 (654)
T ss_pred H
Confidence 3
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.5e-09 Score=88.66 Aligned_cols=123 Identities=16% Similarity=0.189 Sum_probs=100.2
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhh-hchhHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHhhhh
Q 043735 72 NQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRK-FGRKKSMLFGGVLFFAGALING---FAQGVWMLIVGRLLLGFGI 147 (336)
Q Consensus 72 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~---~~~~~~~~~~~r~l~g~~~ 147 (336)
+.+.+++.++..++.+++.....+-++++|++.|| +|-|.--++-++...++-++.+ ..+.+|.+.++||+.|+|.
T Consensus 71 k~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGg 150 (459)
T KOG4686|consen 71 KLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGG 150 (459)
T ss_pred hcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCc
Confidence 45557788888999999999999999999999995 6888766666666666665554 4678999999999999987
Q ss_pred hhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043735 148 GFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAK 194 (336)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~ 194 (336)
-..-..-..+...|+..|+.+.++++......+|+.+--.+.+++.+
T Consensus 151 ESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~ 197 (459)
T KOG4686|consen 151 ESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYD 197 (459)
T ss_pred hhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHH
Confidence 66666667899999999999999999999999998876666666654
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.88 E-value=3e-08 Score=91.83 Aligned_cols=151 Identities=9% Similarity=0.010 Sum_probs=118.2
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhh----------hhHHHHHHHHHHH
Q 043735 74 YCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFA----------QGVWMLIVGRLLL 143 (336)
Q Consensus 74 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~----------~~~~~~~~~r~l~ 143 (336)
.+|+++.+.|.+.....++..++....+++.+|++.|+++.++.++.+++.+..... ++.+.+....++.
T Consensus 282 ~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~ 361 (468)
T TIGR00788 282 CLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIA 361 (468)
T ss_pred cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHH
Confidence 459999999999999999999999999999999999999999999999887554211 3333455556788
Q ss_pred hhhhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccC----CchhHHHHhh-hHHHHHHHHHh
Q 043735 144 GFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKG----GWGWRLSLGG-AMVPALIITIG 218 (336)
Q Consensus 144 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~----~~~w~~~~~~-~~~~~~~~~~~ 218 (336)
+++.+..+.....++.+..|++.+|...++.+...++|..+++.+++.+.+..+ +++.++..++ ..+..++....
T Consensus 362 ~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~ 441 (468)
T TIGR00788 362 EVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPL 441 (468)
T ss_pred HHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHH
Confidence 888888888889999999999999999999999999999999999998887543 2233333333 23333444444
Q ss_pred hcccCC
Q 043735 219 SLVLPD 224 (336)
Q Consensus 219 ~~~~~e 224 (336)
.+++|+
T Consensus 442 ~~llP~ 447 (468)
T TIGR00788 442 LHLLPR 447 (468)
T ss_pred HHhCCC
Confidence 457786
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.1e-08 Score=87.76 Aligned_cols=117 Identities=21% Similarity=0.321 Sum_probs=103.7
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHhhhhhhhhhhHHHH
Q 043735 80 ETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQ--GVWMLIVGRLLLGFGIGFANQSVPLY 157 (336)
Q Consensus 80 ~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~r~l~g~~~~~~~~~~~~~ 157 (336)
...+.+..+..++..++.+++++++||+|+|+.+..+.++.+++.++..+.+ +.+.+++..++.|++.+..+....++
T Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~ 339 (428)
T PF13347_consen 260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM 339 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence 5667888889999999999999999999999999999999999998888775 88999999999999999999999999
Q ss_pred hhhcCCCc-------cchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 043735 158 LSEMAPYK-------YRGALNIGFQLSITIGILIANVLNYFFAKIK 196 (336)
Q Consensus 158 ~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 196 (336)
++|..+.+ +.|...+..+....++..+++.+.+.+.+..
T Consensus 340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~ 385 (428)
T PF13347_consen 340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALV 385 (428)
T ss_pred cccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 99998742 2388889999999999999999888887643
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.4e-07 Score=81.57 Aligned_cols=132 Identities=27% Similarity=0.408 Sum_probs=107.9
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHhhhhhhhhhhHHHH
Q 043735 80 ETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQG--VWMLIVGRLLLGFGIGFANQSVPLY 157 (336)
Q Consensus 80 ~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~--~~~~~~~r~l~g~~~~~~~~~~~~~ 157 (336)
...++..+...++..+++++.|.++||+|||+.+..+.....++.+...+..+ .+.+.+.|++.|++.+...+....+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 118 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL 118 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 46799999999999999999999999999998888887765566666666655 8889999999999999999999999
Q ss_pred hhhcCCC-ccchhHHHHHHH-HHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHH
Q 043735 158 LSEMAPY-KYRGALNIGFQL-SITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPA 212 (336)
Q Consensus 158 ~~~~~~~-~~r~~~~~~~~~-~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~ 212 (336)
+.|+.|+ ++|+...+.... ...+|..+++.+++.+... ...+|+..+.......
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 119 LSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-LLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHH
Confidence 9999997 678888888777 5778888888777776654 3457888666555444
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.3e-07 Score=84.30 Aligned_cols=118 Identities=14% Similarity=0.069 Sum_probs=91.5
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHH---Hh--hhhHHHHHHHHHHHhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALIN---GF--AQGVWMLIVGRLLLGFGIGFA 150 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~---~~--~~~~~~~~~~r~l~g~~~~~~ 150 (336)
|++..+.++......++..++.+..+++.||+|+|+.+....+...++.+.. .. .++.+.+.+...+.|++.+..
T Consensus 234 g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (401)
T PRK11043 234 GYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAI 313 (401)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Confidence 7888889988888888999999999999999999987766555554444322 11 234555556667788888888
Q ss_pred hhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043735 151 NQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAK 194 (336)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~ 194 (336)
++.......|..| ++||++.++++.....++..++.+.+.+.+
T Consensus 314 ~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 356 (401)
T PRK11043 314 YPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS 356 (401)
T ss_pred HHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 8888887777776 579999999998888888888888887765
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.2e-07 Score=83.16 Aligned_cols=115 Identities=19% Similarity=0.296 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHhhhhhhhhhhHHHHhh
Q 043735 82 LTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGF--AQGVWMLIVGRLLLGFGIGFANQSVPLYLS 159 (336)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~--~~~~~~~~~~r~l~g~~~~~~~~~~~~~~~ 159 (336)
.+.+.....+...++.+++++++||+|+|+.+..+.++.+++.+...+ .++.+.+++..++.|++.+...+...++++
T Consensus 266 ~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~a 345 (444)
T PRK09669 266 ATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFS 345 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667788889999999999999999999887766654433322 346667777888999999999999999999
Q ss_pred hcCCCc-------cchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 043735 160 EMAPYK-------YRGALNIGFQLSITIGILIANVLNYFFAKIK 196 (336)
Q Consensus 160 ~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 196 (336)
|..+.+ ..|...+..+....+|..+++.+.+.+.+..
T Consensus 346 d~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~ 389 (444)
T PRK09669 346 DVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWV 389 (444)
T ss_pred hhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 988632 2266778888889999999999999887644
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.3e-06 Score=78.54 Aligned_cols=114 Identities=14% Similarity=0.218 Sum_probs=80.5
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHhhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGF----AQGVWMLIVGRLLLGFGIGFAN 151 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~----~~~~~~~~~~r~l~g~~~~~~~ 151 (336)
|++..+.+++.+...++..++.++.|++.||+|||+++..+.++..+..+.... ..+.+.+.++..+.+.+.+...
T Consensus 226 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (377)
T PRK11102 226 GVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMIS 305 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 788899999999999999999999999999999999998887765544332221 1234444444444454455555
Q ss_pred hhHHHHhhhcCCCccchhHHHHHHHH-HHHHHHHHHHHHH
Q 043735 152 QSVPLYLSEMAPYKYRGALNIGFQLS-ITIGILIANVLNY 190 (336)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~l~~ 190 (336)
......+.|..| ++|+++.++.+.. ..+|..+++.++.
T Consensus 306 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 306 SNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555667777776 7889988876554 4466666665543
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.9e-07 Score=83.00 Aligned_cols=115 Identities=11% Similarity=-0.010 Sum_probs=90.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHHHH
Q 043735 78 NSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLY 157 (336)
Q Consensus 78 s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~~~ 157 (336)
+....+...+....+..+|.++++++.||+++|+++.+..++..+..++..+.++... ...-.+.|++.+..+|....+
T Consensus 267 ~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~sl 345 (410)
T TIGR00885 267 TAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIYGI 345 (410)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666677888999999999999999999999998888888888877766544 456778888899999999999
Q ss_pred hhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 043735 158 LSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKI 195 (336)
Q Consensus 158 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 195 (336)
..+..+++.+.....+. + ..+|+.+.|++.+.+.+.
T Consensus 346 ~~~~~g~~~~~~s~~l~-~-~~~Gga~~p~l~G~~~d~ 381 (410)
T TIGR00885 346 ALKGLGQDTKYGAAGLV-M-AIIGGGIVPPLQGFIIDM 381 (410)
T ss_pred HHhhhhhhhhhhHHHHH-H-HHhccchHHHHHHHHHHH
Confidence 99999876543333333 3 339999999999999984
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-06 Score=79.25 Aligned_cols=121 Identities=21% Similarity=0.315 Sum_probs=100.2
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHhhhhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQ--GVWMLIVGRLLLGFGIGFANQS 153 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~r~l~g~~~~~~~~~ 153 (336)
|.++....+.......+.+++.+++.++.+|+|+|+++.++.++.+++.++..+.+ +.+.+++..++.+++.+...+.
T Consensus 268 g~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l 347 (467)
T COG2211 268 GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPL 347 (467)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccc
Confidence 44555666777777778888899999999999999999999999999998887765 6788888889999999999999
Q ss_pred HHHHhhhcCCCc-----cc--hhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 043735 154 VPLYLSEMAPYK-----YR--GALNIGFQLSITIGILIANVLNYFFAKIK 196 (336)
Q Consensus 154 ~~~~~~~~~~~~-----~r--~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 196 (336)
.+++++|..+.. +| |...+......=+|..++..+.++.....
T Consensus 348 ~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~ 397 (467)
T COG2211 348 PWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAI 397 (467)
T ss_pred cHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999998876542 23 67777888888888888888888777644
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.5e-07 Score=86.34 Aligned_cols=166 Identities=16% Similarity=0.096 Sum_probs=105.9
Q ss_pred hccccccccchhhHHhhhccchhhhcccCCCCcccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhch--------hH
Q 043735 40 DIGISGGVTSMPSFLKRFFPSVYRKQQANSSTNQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGR--------KK 111 (336)
Q Consensus 40 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Gr--------r~ 111 (336)
+.+.+.....+|.|+++.+ |+|-.+.|++.++..+...+..+++|.++||.-+ ||
T Consensus 271 ~~~~~~l~~y~PtY~~~VL-----------------~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rk 333 (466)
T KOG2532|consen 271 NWGFYLLLTYLPTYLKEVL-----------------GFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRK 333 (466)
T ss_pred HHHHHHHHHHhhHHHHHHh-----------------CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHH
Confidence 3444444567888988775 8999999999999999999999999999998855 22
Q ss_pred HH-HHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHhhhhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHH
Q 043735 112 SM-LFGGVLFFAGALINGFAQG-VWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLN 189 (336)
Q Consensus 112 ~l-~~~~~~~~i~~~~~~~~~~-~~~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~ 189 (336)
++ .++....+++.+..++.++ .....+.-+....+..+..............+++-+..+++.+....+.++++|.+.
T Consensus 334 ifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~v 413 (466)
T KOG2532|consen 334 IFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLV 413 (466)
T ss_pred HHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 22 2334444444444455442 111111111112222221222222222221445568999999999999999999999
Q ss_pred HHhhcccCCchhHHHHhhhHHHHHHHHHhhccc
Q 043735 190 YFFAKIKGGWGWRLSLGGAMVPALIITIGSLVL 222 (336)
Q Consensus 190 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 222 (336)
+.+.+......|+++|++.+++.++..+.+.++
T Consensus 414 g~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 414 GIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred eeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 998852123579999998888766665554333
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.3e-06 Score=79.54 Aligned_cols=134 Identities=18% Similarity=0.203 Sum_probs=103.6
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhhhhhch-----hHHH--HHHHHHHHHHHHHHHh---------hhhHHHHHHHHHHHhh
Q 043735 82 LTLFTSSLYLAALLSSLVASSVTRKFGR-----KKSM--LFGGVLFFAGALINGF---------AQGVWMLIVGRLLLGF 145 (336)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~g~l~dr~Gr-----r~~l--~~~~~~~~i~~~~~~~---------~~~~~~~~~~r~l~g~ 145 (336)
.+++.++..+...+.+++..++..|.+| +... .++.++.+++.+..++ ..++++++...++.++
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ 393 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL 393 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 6788888888888888876554444433 3433 6788888888776664 3588899999999999
Q ss_pred hhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHh
Q 043735 146 GIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIG 218 (336)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 218 (336)
|+....|....++++..|++.||+.++++.....+|..+++.+....... .+|...+...++..++..+.
T Consensus 394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 463 (475)
T TIGR00924 394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVP---QGVTGVFGKIGLVTLLVGVV 463 (475)
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888766542 35766666555554443333
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.65 E-value=1e-07 Score=85.27 Aligned_cols=105 Identities=17% Similarity=0.131 Sum_probs=79.1
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHh--hh--hHHHHHHHHHHHhhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGF--AQ--GVWMLIVGRLLLGFGIGFAN 151 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~--~~--~~~~~~~~r~l~g~~~~~~~ 151 (336)
|.+..+.+++.+...++..++.+++|+++||+|||+.+..+..+...+..+..+ .+ +.+...+...+.+++.|...
T Consensus 257 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 336 (366)
T TIGR00886 257 GLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGN 336 (366)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcccc
Confidence 788889999999999999999999999999999998887777666666554443 22 45444445555555556556
Q ss_pred hhHHHHhhhcCCCccchhHHHHHHHHHHHH
Q 043735 152 QSVPLYLSEMAPYKYRGALNIGFQLSITIG 181 (336)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 181 (336)
+....++.|..| ++||...++.+...++|
T Consensus 337 ~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 337 GSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred chhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 666777888886 68999999888776654
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2e-06 Score=80.74 Aligned_cols=141 Identities=18% Similarity=0.106 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhH-------------HHHHHHHHHHhhhhhh
Q 043735 83 TLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGV-------------WMLIVGRLLLGFGIGF 149 (336)
Q Consensus 83 ~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~-------------~~~~~~r~l~g~~~~~ 149 (336)
.+...+..+...++..++..+.||+|||+.++.+...+.++.++.+..... ..+...-+.......+
T Consensus 332 ~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g 411 (513)
T KOG0254|consen 332 FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIG 411 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcc
Confidence 566666667777888888999999999999999999999999877653211 1112222222222333
Q ss_pred hhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHH-HH-HhhcccCCCh
Q 043735 150 ANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALI-IT-IGSLVLPDTP 226 (336)
Q Consensus 150 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~-~~-~~~~~~~e~~ 226 (336)
..++.+.+.+|.+|.+.|+++.++......+...+.........+.. ++...|...+....+ .. ...+++||+.
T Consensus 412 ~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~---~~~~~f~~f~~~~~~~~~~fv~~~~pETk 487 (513)
T KOG0254|consen 412 WGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEAL---GIGGTFGYFGGICLLSLIIFVFFFVPETK 487 (513)
T ss_pred cccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhc---cccchHHHHHHHHHHHHHHHheEEcccCC
Confidence 45666678999999999999999877776666655444433333321 123344433333333 33 3557889986
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.3e-06 Score=76.44 Aligned_cols=133 Identities=14% Similarity=0.153 Sum_probs=107.4
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVP 155 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~ 155 (336)
|.+..+.+...+.+..+..+|.+.+.++..|+...|.+.+..++..+.++...+.++...+. .-++.|++.+..+|...
T Consensus 268 g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~~-~l~~ig~F~simfPTIf 346 (422)
T COG0738 268 GLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVALY-ALFLIGLFNSIMFPTIF 346 (422)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHHH-HHHHHHHHhHHHHHHHH
Confidence 78899999999999999999999999999999999999998888888888888888866554 46788999999999999
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHH
Q 043735 156 LYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALI 214 (336)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~ 214 (336)
+...+..+++ ....+..-....+|+++.|.+.+++.+.. |-...+.....++.+
T Consensus 347 slal~~l~~~--ts~~s~~l~maivGGAiiP~l~G~i~d~~---g~~~~~~~~pllc~l 400 (422)
T COG0738 347 SLALKNLGEH--TSVGSGLLVMAIVGGAIIPPLQGVIADMF---GIQLTFLIVPLLCYL 400 (422)
T ss_pred HHHHhccCcc--ccccceeeeeheecchHHHHHHHHHHHhh---hhHHHHHHHHHHHHH
Confidence 9999999833 44445555567789999999999999854 455555433333333
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1e-05 Score=73.29 Aligned_cols=118 Identities=20% Similarity=0.182 Sum_probs=89.7
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHH-HHHHHHHh--hhhHHHHHHHHHHHhhhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFF-AGALINGF--AQGVWMLIVGRLLLGFGIGFANQ 152 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~-i~~~~~~~--~~~~~~~~~~r~l~g~~~~~~~~ 152 (336)
|.+..+.+++.....++..+++++.+++.||++++........... +....... ..+.+.+.+..++.|++.+...+
T Consensus 239 g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 318 (394)
T PRK11652 239 GLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFP 318 (394)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 7788889999888889999999999999999985443322222222 22122222 23456677778899999999999
Q ss_pred hHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043735 153 SVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAK 194 (336)
Q Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~ 194 (336)
....+..|..| ++++...++.+....+|..+++.+.+.+..
T Consensus 319 ~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~ 359 (394)
T PRK11652 319 LATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQ 359 (394)
T ss_pred HHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 99999999887 568999999999999999999999887754
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.2e-07 Score=84.03 Aligned_cols=135 Identities=15% Similarity=0.007 Sum_probs=101.1
Q ss_pred HHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHhhh-hhhhhhhHHHHhhhcCCCccc
Q 043735 93 ALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQG----VWMLIVGRLLLGFG-IGFANQSVPLYLSEMAPYKYR 167 (336)
Q Consensus 93 ~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~----~~~~~~~r~l~g~~-~~~~~~~~~~~~~~~~~~~~r 167 (336)
+..|-.+...+.|++|||++.+.+.+++.+..+..+..-+ ...+++...+..+. .-+.......+.+|.+|.+.|
T Consensus 361 ~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR 440 (538)
T KOG0252|consen 361 TVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVR 440 (538)
T ss_pred cCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHh
Confidence 3446667788899999999999999999999988877544 12222222222221 112234445677899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcc--cCCchhHHHHhhhHHHHHHHHHhhcccCCChH
Q 043735 168 GALNIGFQLSITIGILIANVLNYFFAKI--KGGWGWRLSLGGAMVPALIITIGSLVLPDTPN 227 (336)
Q Consensus 168 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~ 227 (336)
+...++....+-+|.+++.....++.+. ....+.++.+++.+...++..+..+++||+.+
T Consensus 441 ~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~ 502 (538)
T KOG0252|consen 441 STCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKG 502 (538)
T ss_pred hhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccc
Confidence 9999999999999999999888877761 11246888999999988888888889999864
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.2e-07 Score=84.01 Aligned_cols=148 Identities=20% Similarity=0.191 Sum_probs=107.5
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhc-----hhHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHH
Q 043735 72 NQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFG-----RKKSMLFGGVLFFAGALINGFA----QGVWMLIVGRLL 142 (336)
Q Consensus 72 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G-----rr~~l~~~~~~~~i~~~~~~~~----~~~~~~~~~r~l 142 (336)
++++|+++++...+.+...+...+ .++.|.++|-+- ||+-++++.++..++.+.++.. .+.....+.-++
T Consensus 17 ~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~l 95 (433)
T PF03092_consen 17 KDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFL 95 (433)
T ss_pred HHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHH
Confidence 344599999998888888777655 677889999763 5566666777776555555443 245666667788
Q ss_pred HhhhhhhhhhhHHHHhhhcCCC--ccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhc
Q 043735 143 LGFGIGFANQSVPLYLSEMAPY--KYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSL 220 (336)
Q Consensus 143 ~g~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (336)
..+|......++-+++.|...+ +.||...+.......+|++++..+.+.+.+. .+++..|.+.+....+..+..+
T Consensus 96 a~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~---~~~~~~f~i~~~~~~l~~~~~~ 172 (433)
T PF03092_consen 96 ASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS---FGPQGVFLISAALPLLMLIVAL 172 (433)
T ss_pred HHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc---CCCeEEehHHHHHHHHHHHHHH
Confidence 8889898899999999998733 3367778888888899999999999988874 4577777776666555544444
Q ss_pred ccC
Q 043735 221 VLP 223 (336)
Q Consensus 221 ~~~ 223 (336)
++.
T Consensus 173 ~~~ 175 (433)
T PF03092_consen 173 FLL 175 (433)
T ss_pred Hhh
Confidence 443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.7e-06 Score=80.86 Aligned_cols=134 Identities=13% Similarity=0.056 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHHHHHHHh----HHhhhhhchhHHHHHHHHHHHHHHHHHHhhhh---------HHHHHHHHHHHhhhhh
Q 043735 82 LTLFTSSLYLAALLSSLVA----SSVTRKFGRKKSMLFGGVLFFAGALINGFAQG---------VWMLIVGRLLLGFGIG 148 (336)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~----g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~---------~~~~~~~r~l~g~~~~ 148 (336)
.+++.++..+...+..++. +++.||++.++.+.++.++.+++.+......+ .++++..+++.|+++.
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~ 397 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL 397 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence 5666777776666666655 66666666668889999999999888766654 4578889999999999
Q ss_pred hhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhc------ccC-CchhHHHHhhhHHHHHHH
Q 043735 149 FANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAK------IKG-GWGWRLSLGGAMVPALII 215 (336)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~------~~~-~~~w~~~~~~~~~~~~~~ 215 (336)
...|....++.+..|++.||+.++.+..+..+|..++..+...... ... ..+..+.|...++..++.
T Consensus 398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 471 (500)
T PRK09584 398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVI 471 (500)
T ss_pred HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888888887776653221 000 113556666555554433
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=8.7e-06 Score=71.90 Aligned_cols=227 Identities=15% Similarity=0.118 Sum_probs=133.9
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHH-HHHHHHHHHHHHHhhhh---HHHHHHHHHHHhhhhhhhhhhHH
Q 043735 80 ETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLF-GGVLFFAGALINGFAQG---VWMLIVGRLLLGFGIGFANQSVP 155 (336)
Q Consensus 80 ~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~-~~~~~~i~~~~~~~~~~---~~~~~~~r~l~g~~~~~~~~~~~ 155 (336)
+..+...++..+..++-+++-|.++|+.|+||..+. ...+..++.....+.++ ++..++...+..++.........
T Consensus 58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd 137 (438)
T COG2270 58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD 137 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence 445777888888889999999999999997765554 44444555555555543 44555566788888888888889
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhccc---------------CCchhHHHHhhhHHHHHHHHHh-h
Q 043735 156 LYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIK---------------GGWGWRLSLGGAMVPALIITIG-S 219 (336)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~---------------~~~~w~~~~~~~~~~~~~~~~~-~ 219 (336)
+++.+..++++-++..+.-....-+|+.+.-+..-...-.. ....-|..+.+.++--++..+. .
T Consensus 138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~ 217 (438)
T COG2270 138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMI 217 (438)
T ss_pred hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHH
Confidence 99999999887777766555455555544333221111000 1233565665555543333333 3
Q ss_pred cccCCChHHHHhcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhch
Q 043735 220 LVLPDTPNSMIERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGI 299 (336)
Q Consensus 220 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (336)
+..++.++-. ..... . -...-++-+.+.+++.++. ....+++..+...-+.
T Consensus 218 ~~v~~~~~~~---~~~~~---~-------------------l~~g~k~L~~t~k~i~~~~----~i~~FLiA~~~~~DGv 268 (438)
T COG2270 218 LNVHDAEKIS---SPPPT---A-------------------LRNGFKELKSTFKEIRGRK----NLVLFLIARFFYIDGV 268 (438)
T ss_pred hccccccccc---ccchH---H-------------------HHHHHHHHHHHHHHHhccc----chHHHHHHHHHHHhhH
Confidence 3445443200 00000 0 0000011122333443333 3444555555555566
Q ss_pred hHHHHcHHHHHH-hcCCCCcHHHHHHHHHhHhhheec
Q 043735 300 NVIMFYAPVLFN-TIGFGNDASLMSAVITGLVNACAT 335 (336)
Q Consensus 300 ~~~~~~~~~~~~-~~G~s~~~~~~~~~~~~~~~~~~~ 335 (336)
+........+-. .+|+++.+..+.....++..++|+
T Consensus 269 ~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ 305 (438)
T COG2270 269 NTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGA 305 (438)
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHH
Confidence 777777777775 789999999888888888877765
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.6e-05 Score=73.54 Aligned_cols=115 Identities=15% Similarity=0.173 Sum_probs=79.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHhhhhhhhhhhHHHHh
Q 043735 81 TLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQ--GVWMLIVGRLLLGFGIGFANQSVPLYL 158 (336)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~r~l~g~~~~~~~~~~~~~~ 158 (336)
..+.+.+...++..++.+++++++||+|+|+++..+..+.++..++..+.+ +...+.+.-++.|++.+...+....++
T Consensus 264 ~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ 343 (460)
T PRK11462 264 VFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMM 343 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888899999999999999999988766554444343333322 233344455667887777777777788
Q ss_pred hhcCCCc-----cc--hhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 043735 159 SEMAPYK-----YR--GALNIGFQLSITIGILIANVLNYFFAKI 195 (336)
Q Consensus 159 ~~~~~~~-----~r--~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 195 (336)
+|..+.+ +| |...+......-+|..+++.+.+.+...
T Consensus 344 ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~ 387 (460)
T PRK11462 344 SDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAY 387 (460)
T ss_pred HHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777621 33 5556777778888888888888877654
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.45 E-value=1e-05 Score=62.52 Aligned_cols=116 Identities=22% Similarity=0.245 Sum_probs=95.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHHH
Q 043735 77 YNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPL 156 (336)
Q Consensus 77 ~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~~ 156 (336)
+++..--.-.++.+....+++++.+.+.+++|.|+.++++.+...+-.... +-++.+.++.+-.+.|++.+..++.-..
T Consensus 34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ 112 (156)
T PF05978_consen 34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGT 112 (156)
T ss_pred ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhH
Confidence 334444455777778888999999999999999999999999988665544 4567788889999999999999999999
Q ss_pred HhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 043735 157 YLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFA 193 (336)
Q Consensus 157 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~ 193 (336)
++.+..+++.|++..+++-.....+.++|.++...+.
T Consensus 113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888888888888777665543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.3e-07 Score=77.73 Aligned_cols=137 Identities=18% Similarity=0.104 Sum_probs=106.6
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhc--hhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFG--RKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQS 153 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G--rr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~ 153 (336)
..+..+.|...--..+.+.++..+.|.++||++ |......+++..++++....+++++.++.+-++..+++.+.....
T Consensus 302 ~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~das 381 (464)
T KOG3764|consen 302 FTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADAS 381 (464)
T ss_pred cCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHH
Confidence 334447777777888999999999999999999 544445566666666677778899999999999999988887777
Q ss_pred HHHHhhhcCCCcc------chhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHH
Q 043735 154 VPLYLSEMAPYKY------RGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALII 215 (336)
Q Consensus 154 ~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~ 215 (336)
......++.+.++ -|...++...++.+|..+||.+++.+.+ ..|++|...+.++..+.-
T Consensus 382 l~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~---~iGF~wl~~iig~~n~iy 446 (464)
T KOG3764|consen 382 LIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVE---AIGFEWLMTIIGILNLIY 446 (464)
T ss_pred HhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchhee---ehhHHHHHHHHHHHHHHH
Confidence 7777776665543 3678899999999999999999999988 456777776666654433
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-06 Score=79.31 Aligned_cols=141 Identities=16% Similarity=0.146 Sum_probs=118.7
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVP 155 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~ 155 (336)
+-.+.-.|.+......+-++.-++.+++.+|+|+-+++.+++.+..+=.+...+..|.|+.+-.-+++|+..+..+....
T Consensus 402 ~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~ 481 (618)
T KOG3762|consen 402 GGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAII 481 (618)
T ss_pred CCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHH
Confidence 44455567777777788888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCccchhHHHHHHH-HHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhh
Q 043735 156 LYLSEMAPYKYRGALNIGFQL-SITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGS 219 (336)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 219 (336)
+|++...|++.|..+-++.+. ..++|-.+|.++++.+.+. ++-|..|.+.++.+++..+..
T Consensus 482 sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~---fg~~ttf~~~giAcl~~l~~~ 543 (618)
T KOG3762|consen 482 SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER---FGARTTFRIFGIACLVTLALF 543 (618)
T ss_pred HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee---ehhHHHHHHHHHHHHHHHHHH
Confidence 999999999999998886554 5778888888999888874 457777777666655554443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=9.2e-06 Score=75.70 Aligned_cols=111 Identities=17% Similarity=0.248 Sum_probs=91.1
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhhhhhchhHH-------HHHHHHHHHHHHHHHH-----hh-----hhHHHHHHHHHHHh
Q 043735 82 LTLFTSSLYLAALLSSLVASSVTRKFGRKKS-------MLFGGVLFFAGALING-----FA-----QGVWMLIVGRLLLG 144 (336)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~-------l~~~~~~~~i~~~~~~-----~~-----~~~~~~~~~r~l~g 144 (336)
..++.+...+...+.+++.+++.||+|||+. +.++.++.+++.+..+ .. .+.+.++...++.|
T Consensus 311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g 390 (489)
T PRK10207 311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS 390 (489)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence 4566777777788889999999999999973 6677777776654321 11 24677778889999
Q ss_pred hhhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 043735 145 FGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFF 192 (336)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 192 (336)
+|++...+....++.+..|++.+|.+++++.....+|+.++..++...
T Consensus 391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT 438 (489)
T ss_pred HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998887655
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.8e-05 Score=65.66 Aligned_cols=146 Identities=16% Similarity=0.189 Sum_probs=118.6
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHhHHhhh-hhchhHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHhhhh
Q 043735 72 NQYCQYNSETLTLFTSSLYLAALLSSLVASSVTR-KFGRKKSMLFGGVLFFAGALINGF---AQGVWMLIVGRLLLGFGI 147 (336)
Q Consensus 72 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d-r~Grr~~l~~~~~~~~i~~~~~~~---~~~~~~~~~~r~l~g~~~ 147 (336)
.+-||++..+...++.....|..+|-...|++.. |.++++.-.+++....++..+..+ ..+.+.+...-++.|++.
T Consensus 236 g~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~ 315 (403)
T PF03209_consen 236 GEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGN 315 (403)
T ss_pred hHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhh
Confidence 4457999999999999999999999999999877 778888888888888887755443 457788999999999999
Q ss_pred hhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhccc----C---CchhHHHHhhhHHHHHHHHH
Q 043735 148 GFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIK----G---GWGWRLSLGGAMVPALIITI 217 (336)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~----~---~~~w~~~~~~~~~~~~~~~~ 217 (336)
|.........+.+..++++-|..++.+.....++..++..+++.+.+.. + ..+|..+|.+.++..+.+..
T Consensus 316 G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ 392 (403)
T PF03209_consen 316 GLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALV 392 (403)
T ss_pred hHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888899999999999999999999998887632 1 23566666655555444433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.2e-05 Score=67.96 Aligned_cols=119 Identities=8% Similarity=0.130 Sum_probs=79.0
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHH-----hhhhHHHHHHHHHHHhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALING-----FAQGVWMLIVGRLLLGFGIGFA 150 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~-----~~~~~~~~~~~r~l~g~~~~~~ 150 (336)
|.+..+.++.......+..+++.+.+.+.+|.++++.+.....+..++.++.. ..++++..++..++.++|.+..
T Consensus 250 g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~ 329 (413)
T PRK15403 250 GMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLI 329 (413)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHH
Confidence 88999999998888888899888888876555444443332233333332222 1233434567788888888888
Q ss_pred hhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 043735 151 NQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKI 195 (336)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 195 (336)
.+......-+ -....+|++.++++.....+...++...+++...
T Consensus 330 ~p~~~~~al~-~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~ 373 (413)
T PRK15403 330 FPTLFRFTLF-SNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN 373 (413)
T ss_pred hHHHHHHHhc-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7777643321 1222478999988888888888888888887654
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.4e-09 Score=96.48 Aligned_cols=137 Identities=25% Similarity=0.197 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHH--h--h-hh----HHHHHHHHHHHhhhhh-hhhhhHHHH
Q 043735 88 SLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALING--F--A-QG----VWMLIVGRLLLGFGIG-FANQSVPLY 157 (336)
Q Consensus 88 ~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~--~--~-~~----~~~~~~~r~l~g~~~~-~~~~~~~~~ 157 (336)
...+...++.+....+.||+|||++++.+.++.+++.+..+ . . ++ -...++.-.+...+.+ ...+..+.+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~ 373 (451)
T PF00083_consen 294 ILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIY 373 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccc
Confidence 34455566777778999999999999999999888887664 1 1 11 1111222222222222 334666688
Q ss_pred hhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHH-HHHHHHhhcccCCChH
Q 043735 158 LSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVP-ALIITIGSLVLPDTPN 227 (336)
Q Consensus 158 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~e~~~ 227 (336)
..|.+|.+.|+++.++......+++.+++.+...+.+..+ ++ ..+.+.+.. .+...+..+++||+..
T Consensus 374 ~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~--~~-~~~~i~~~~~~i~~i~~~~~lpET~g 441 (451)
T PF00083_consen 374 TAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG--GW-GVFLIFAGVCLIAIIFVYFFLPETKG 441 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccc--cc-ccchhhHHHHHHHHhheeEEEeeCCC
Confidence 8999999999999999999888888888887766665322 13 233333333 3334445578999863
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.1e-06 Score=56.55 Aligned_cols=65 Identities=17% Similarity=0.247 Sum_probs=58.8
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 043735 72 NQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWML 136 (336)
Q Consensus 72 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~ 136 (336)
.++.++|.++.+++.+.+++|+.+|.+....+.++..+++.+..+.+...+..+.+++.++.+.+
T Consensus 19 ~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 19 QADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 34448999999999999999999999999999999888999999999999999999998877654
|
Note that many members are hypothetical proteins. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00032 Score=64.44 Aligned_cols=116 Identities=8% Similarity=0.118 Sum_probs=87.2
Q ss_pred CchhHHHHHHHHHHHHHH-HHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhh----h----------------------
Q 043735 79 SETLTLFTSSLYLAALLS-SLVASSVTRKFGRKKSMLFGGVLFFAGALINGFA----Q---------------------- 131 (336)
Q Consensus 79 ~~~~~~~~~~~~~~~~i~-~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~----~---------------------- 131 (336)
.+...++-+...+..++. .++.+++++|++|++++............+.++. +
T Consensus 42 ae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~ 121 (472)
T TIGR00769 42 AEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMG 121 (472)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHH
Confidence 357888888888877766 8899999999999999888776666666555432 0
Q ss_pred -----hHHHHHHHHHHHhhhhhhhhh-hHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043735 132 -----GVWMLIVGRLLLGFGIGFANQ-SVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAK 194 (336)
Q Consensus 132 -----~~~~~~~~r~l~g~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~ 194 (336)
+.|...+......+-.....+ .-+.+++|.++.++-.|..+++..+.++|.++++.+..++.+
T Consensus 122 ~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 122 FIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122233333444444444454 778999999999998999999999999999999988888763
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.19 E-value=9e-05 Score=68.32 Aligned_cols=142 Identities=13% Similarity=0.059 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhhch-hHHHHHHHHHHHHHHHHHHhhhh---------------------HHHHHHHHH
Q 043735 84 LFTSSLYLAALLSSLVASSVTRKFGR-KKSMLFGGVLFFAGALINGFAQG---------------------VWMLIVGRL 141 (336)
Q Consensus 84 ~~~~~~~~~~~i~~~~~g~l~dr~Gr-r~~l~~~~~~~~i~~~~~~~~~~---------------------~~~~~~~r~ 141 (336)
+....+.+...+.+++..++.+|+|+ |++...+.++.+++.....+.++ .+..++...
T Consensus 309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (477)
T TIGR01301 309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFA 388 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHH
Confidence 44455555556777888899999995 67778888888888776665432 266777788
Q ss_pred HHhhhhhhhhhhHHHHhhhcCCCc--cchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhh
Q 043735 142 LLGFGIGFANQSVPLYLSEMAPYK--YRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGS 219 (336)
Q Consensus 142 l~g~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 219 (336)
+.|+..+..+...++++++..+++ +.|..+|+++.+..+..++..+..+.+.+..++ +-.+.+.+.++..+++.+..
T Consensus 389 ~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~-~~~~~~~~~gv~~~~aa~~~ 467 (477)
T TIGR01301 389 ILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGG-GNLPAFVVGAVAAFVSGLLA 467 (477)
T ss_pred HhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCC-CCeeHHHHHHHHHHHHHHHH
Confidence 999999999999999999999954 449999999999999999999888876655442 34556777777766666655
Q ss_pred -cccCCCh
Q 043735 220 -LVLPDTP 226 (336)
Q Consensus 220 -~~~~e~~ 226 (336)
+.+|+++
T Consensus 468 ~~~~~~~~ 475 (477)
T TIGR01301 468 LILLPRPR 475 (477)
T ss_pred HHhCCCCC
Confidence 4567654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00013 Score=68.82 Aligned_cols=140 Identities=21% Similarity=0.196 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHH---HHHHHHHHHhhhhhhhhhhHHHHhhh
Q 043735 84 LFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVW---MLIVGRLLLGFGIGFANQSVPLYLSE 160 (336)
Q Consensus 84 ~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~---~~~~~r~l~g~~~~~~~~~~~~~~~~ 160 (336)
.................+.+.|++|||.....+..+..++.++.++..... ...+...+..++.+..+.....+.+|
T Consensus 354 ~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 433 (521)
T KOG0255|consen 354 LNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAE 433 (521)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333345555566668999999999999999999999999888876433 34555555556666677777899999
Q ss_pred cCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHH-HHHhhcccCCChH
Q 043735 161 MAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALI-ITIGSLVLPDTPN 227 (336)
Q Consensus 161 ~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~e~~~ 227 (336)
.+|...|..+.+.......+|.+++|.+......... ..... +.+....+ ..+...++||+..
T Consensus 434 l~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~--~~~~~--~~~~~~~l~~~~~~~~lpet~~ 497 (521)
T KOG0255|consen 434 LIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFP--LLGLI--LFGWLALLLGLLSLLLLPETKG 497 (521)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--cchHH--HHHHHHHHHHHHHHhcCcccCC
Confidence 9999999999999999999999999988866554211 12211 22333333 3344478899863
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.11 E-value=1e-05 Score=54.55 Aligned_cols=45 Identities=18% Similarity=0.397 Sum_probs=41.2
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLF 120 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 120 (336)
|+|..++|.+.++..+...++++++|.++||+||++.++....++
T Consensus 31 Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 31 GLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 999999999999999999999999999999999998887765543
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.4e-05 Score=71.29 Aligned_cols=129 Identities=11% Similarity=0.036 Sum_probs=81.7
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhh----hchhHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRK----FGRKKSMLFGGVLFFAGA-LINGFAQGVWMLIVGRLLLGFGIGFA 150 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr----~Grr~~l~~~~~~~~i~~-~~~~~~~~~~~~~~~r~l~g~~~~~~ 150 (336)
|+|..+.+.+.+.+.++.+++.+++|+++|| ..+|..+.....+..+.. ......++.......-...+.+....
T Consensus 305 ~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~ 384 (495)
T KOG2533|consen 305 GYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIAT 384 (495)
T ss_pred CcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHH
Confidence 6899999999999999999999999999999 677777776666665555 33333333333333333334445556
Q ss_pred hhhHHHHhhhcCCCccch-hHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHh
Q 043735 151 NQSVPLYLSEMAPYKYRG-ALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLG 206 (336)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~ 206 (336)
.+......++....+.|. ...+....+.+.++.++|.+-.... ...++|.+.|.
T Consensus 385 ~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~--ap~y~~~~~f~ 439 (495)
T KOG2533|consen 385 AIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLD--APRYGWGAVFY 439 (495)
T ss_pred HHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhccccc--CcchhhhhHHH
Confidence 666677777777665553 4444555555555555554332211 12356777773
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00028 Score=66.44 Aligned_cols=110 Identities=18% Similarity=0.116 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhhhhhch-hHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHhhhhhhhhhhHHHH
Q 043735 81 TLTLFTSSLYLAALLSSLVASSVTRKFGR-KKSMLFGGVLFFAGALINGF--AQGVWMLIVGRLLLGFGIGFANQSVPLY 157 (336)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~g~l~dr~Gr-r~~l~~~~~~~~i~~~~~~~--~~~~~~~~~~r~l~g~~~~~~~~~~~~~ 157 (336)
..++......++..+++++.|.+..+++| |+.++++.+++.+++-+++. .+|....+..-++.|++.|.........
T Consensus 350 ~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~ 429 (599)
T PF06609_consen 350 EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVI 429 (599)
T ss_pred eeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHe
Confidence 56788888899999999999999998887 45556676666654433333 2355566677889999988887777777
Q ss_pred hhhcCCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 043735 158 LSEMAPYKYRGALNIGFQLSITIGILIANVLNY 190 (336)
Q Consensus 158 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~ 190 (336)
+.-..|.+.-|.+.++....-.+|+.++.-+-.
T Consensus 430 ~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~ 462 (599)
T PF06609_consen 430 AQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYN 462 (599)
T ss_pred eEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 777778888899999888888888877765543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0033 Score=57.15 Aligned_cols=243 Identities=10% Similarity=0.017 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHH------hh--h----hHHHHHHHHHHHhhhhh--
Q 043735 83 TLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALING------FA--Q----GVWMLIVGRLLLGFGIG-- 148 (336)
Q Consensus 83 ~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~------~~--~----~~~~~~~~r~l~g~~~~-- 148 (336)
+...-.-.+..++.++..|.+.||..|.++...+.+..-++..... +. + +.+.......+.-+...
T Consensus 41 siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~ 120 (432)
T PF06963_consen 41 SIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIE 120 (432)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHH
Confidence 4444445566677888889999999999987776555443332221 11 1 11222222221111111
Q ss_pred hhhhhHH--HHhhhcC------CCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhc
Q 043735 149 FANQSVP--LYLSEMA------PYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSL 220 (336)
Q Consensus 149 ~~~~~~~--~~~~~~~------~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (336)
-....+. +.=-||. +++.+.+.++...-.--+..+++|++.+.+... .+.+...++.+...++....-+
T Consensus 121 ~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~---~s~~~~~~~i~~~N~~S~~vEy 197 (432)
T PF06963_consen 121 RLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTF---ASPVIAAIFIAGWNLASVFVEY 197 (432)
T ss_pred HHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cCHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 1222332 334456777777777888999999999999874 3466555555555554444322
Q ss_pred -cc----CCChHHHHhcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHH
Q 043735 221 -VL----PDTPNSMIERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQ 295 (336)
Q Consensus 221 -~~----~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (336)
++ ...|. +..+++.++.++..+.. ...+.+.+....+...+.-++....|+..++++-...-+-..++ ++..
T Consensus 198 ~~l~~VY~~~P~-L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalL-Y~TV 274 (432)
T PF06963_consen 198 FLLARVYNSVPA-LAVKKRSSESESSSDEE-SSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFALALL-YFTV 274 (432)
T ss_pred HHHHHHHHhChH-hcCCCCCcccccccccc-ccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHH-HHHH
Confidence 22 22221 11111111111000000 00011111111111111122224567666665533332222222 2212
Q ss_pred hhchhHHHHcHHHHHHhcCCCCcHHHHHHHHHhHhhheec
Q 043735 296 LTGINVIMFYAPVLFNTIGFGNDASLMSAVITGLVNACAT 335 (336)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~G~s~~~~~~~~~~~~~~~~~~~ 335 (336)
. ++......|+...|++....+..-....+.++.|+
T Consensus 275 L----sf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT 310 (432)
T PF06963_consen 275 L----SFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGT 310 (432)
T ss_pred h----cCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2 23455666777779999998888777777776654
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.77 E-value=5.7e-05 Score=67.38 Aligned_cols=116 Identities=17% Similarity=0.303 Sum_probs=85.2
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhh----hchhHHHHHHHHH-HHHHHHHHHhhhhH-----------------
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRK----FGRKKSMLFGGVL-FFAGALINGFAQGV----------------- 133 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr----~Grr~~l~~~~~~-~~i~~~~~~~~~~~----------------- 133 (336)
|++....+.+-...-+...+.+++.|..+|| |||||.++....+ ..++.++..++.++
T Consensus 63 Gvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai 142 (498)
T KOG0637|consen 63 GVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAI 142 (498)
T ss_pred CCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHH
Confidence 7888888877777778888999999999995 8998877765444 44445555555432
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHhhhcCCCccchh-HHHHHHHHHHHHHHHHHHHHHH
Q 043735 134 WMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGA-LNIGFQLSITIGILIANVLNYF 191 (336)
Q Consensus 134 ~~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~g~~~~~~l~~~ 191 (336)
..++++..+.=+.....+..+-++..|.....++-+ +++++.....+|+.+|-.++++
T Consensus 143 ~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y 201 (498)
T KOG0637|consen 143 VLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSY 201 (498)
T ss_pred HHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccc
Confidence 233444444445566778888899999997776666 9999999999999888776653
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00017 Score=62.97 Aligned_cols=124 Identities=19% Similarity=0.188 Sum_probs=110.4
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhc--hhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhh
Q 043735 72 NQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFG--RKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGF 149 (336)
Q Consensus 72 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G--rr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~ 149 (336)
++.+|+++.|.|-+.+...+.+.+.+....+..||.. -+-.+..++.++.-..+.....+....+.++-.+..+..+.
T Consensus 289 ~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~ 368 (451)
T KOG2615|consen 289 HGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTAS 368 (451)
T ss_pred cCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHH
Confidence 3556999999999999999999999999999999987 67777777777777777788888888899999999999898
Q ss_pred hhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 043735 150 ANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKI 195 (336)
Q Consensus 150 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 195 (336)
..+....++....|.++||..+|+......++-++||.+++.+..+
T Consensus 369 ~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W 414 (451)
T KOG2615|consen 369 VVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW 414 (451)
T ss_pred hhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence 9999999999999999999999999999999999999999887664
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00092 Score=61.46 Aligned_cols=122 Identities=14% Similarity=0.199 Sum_probs=106.9
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHhH-HhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhh
Q 043735 72 NQYCQYNSETLTLFTSSLYLAALLSSLVAS-SVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFA 150 (336)
Q Consensus 72 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g-~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~ 150 (336)
+..++++.++.+.+.+.......+++.+.. .+...+|-|+++..|++.-.+..++.+++.+.|++.....+.++. ...
T Consensus 269 ~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~-~~~ 347 (463)
T KOG2816|consen 269 KAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA-GIV 347 (463)
T ss_pred eeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh-cch
Confidence 445699999999999999999999998877 777788999999999999999999999999999988888777774 556
Q ss_pred hhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043735 151 NQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAK 194 (336)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~ 194 (336)
.+..-+.++.+.+++++|++.++....-.+...++|.+-+.+..
T Consensus 348 ~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~ 391 (463)
T KOG2816|consen 348 FPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA 391 (463)
T ss_pred hHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence 78888999999999999999999999999999999888776644
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0042 Score=57.69 Aligned_cols=113 Identities=18% Similarity=0.193 Sum_probs=87.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhhhhhch--hH----H-HHHHHHHHHHHHHHHHhh---------hhHHHHHHHHHHHh
Q 043735 81 TLTLFTSSLYLAALLSSLVASSVTRKFGR--KK----S-MLFGGVLFFAGALINGFA---------QGVWMLIVGRLLLG 144 (336)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~g~l~dr~Gr--r~----~-l~~~~~~~~i~~~~~~~~---------~~~~~~~~~r~l~g 144 (336)
..+|.+++..+.-.+.+++.+++=.|.+| |. . +.+++++.+++.+.+.+. .+.+++++..++++
T Consensus 309 p~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t 388 (493)
T PRK15462 309 PTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMG 388 (493)
T ss_pred CHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence 35788889998888888888888666633 21 1 667778878777655431 25677888899999
Q ss_pred hhhhhhhhhHHHHhhhcCCCccchhHHHHHHHH-HHHHHHHHHHHHHHhh
Q 043735 145 FGIGFANQSVPLYLSEMAPYKYRGALNIGFQLS-ITIGILIANVLNYFFA 193 (336)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~l~~~~~ 193 (336)
+|+-...|+..+++++..|+|.||..++.+... ..+|..++..+.....
T Consensus 389 ~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~ 438 (493)
T PRK15462 389 FAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTS 438 (493)
T ss_pred HHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999998774 3677777777666553
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0031 Score=57.53 Aligned_cols=107 Identities=20% Similarity=0.224 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHHHHhhhcCCCc
Q 043735 86 TSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYK 165 (336)
Q Consensus 86 ~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~ 165 (336)
.++.+....+++++.+.+.|+.|.|+.+.++........+...+.+ -+.+++.-.+.|+|.+..+..-..++.|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N-~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPN-SYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcc-hHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 8888899999999999999999999999999999888887666555 556778899999999998999899999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 043735 166 YRGALNIGFQLSITIGILIANVLNYFFA 193 (336)
Q Consensus 166 ~r~~~~~~~~~~~~~g~~~~~~l~~~~~ 193 (336)
.+.+..++.-.....+.++|..+...+.
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~ 162 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYF 162 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeee
Confidence 9999999888877777777766554443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0028 Score=56.74 Aligned_cols=136 Identities=18% Similarity=0.177 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHHHHhhhc
Q 043735 82 LTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEM 161 (336)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~~~~~~~ 161 (336)
.+.+.-+..+...+..+.+.++.+|+.-+.-.....+++.++.++.+++++.+.-+++-.+.+++.|........+.+ .
T Consensus 61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~ 139 (402)
T PF02487_consen 61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-F 139 (402)
T ss_pred chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-h
Confidence 455666677788888888999999987665566677788888888899999988889999999998888777777654 4
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhc-ccCC
Q 043735 162 APYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSL-VLPD 224 (336)
Q Consensus 162 ~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~e 224 (336)
+++ ...+.+..+.+.++++|+..-..+.. . ..+-|..+.....+.++..+..+ .+|.
T Consensus 140 y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~-g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 140 YGK----SSLSAWSSGTGGAGLVGALYYLGLTT-L-GLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred cCc----cccccccCCcChhhHHHHHHHHHHHH-h-CcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 553 34567777777777777765555544 2 23456666655554444444334 3443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0018 Score=61.33 Aligned_cols=134 Identities=13% Similarity=0.017 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHhHHhhh---h------hchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHH
Q 043735 85 FTSSLYLAALLSSLVASSVTR---K------FGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVP 155 (336)
Q Consensus 85 ~~~~~~~~~~i~~~~~g~l~d---r------~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~ 155 (336)
++++..++..+|.+..|.+.. | +.|.-.+.+..+ +.++.++.++.-....+.+..++.|++.|..++...
T Consensus 396 ~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~ 474 (591)
T PTZ00207 396 LTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIA 474 (591)
T ss_pred ehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHH
Confidence 678888888888888887762 1 222222333333 555555555543336899999999999999999999
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHH-HHHHHHhhcccC----------CchhHHHHhhhHHHHHHHHHhhc
Q 043735 156 LYLSEMAPYKYRGALNIGFQLSITIGILIA-NVLNYFFAKIKG----------GWGWRLSLGGAMVPALIITIGSL 220 (336)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~-~~l~~~~~~~~~----------~~~w~~~~~~~~~~~~~~~~~~~ 220 (336)
..++|+|- |+-|+-..+...+..+|..+- ..+.+.+.+... ..-++..|++.+.++++..+...
T Consensus 475 ~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~ 549 (591)
T PTZ00207 475 LVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITST 549 (591)
T ss_pred HHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHh
Confidence 99999999 888998888888888888775 466666654211 12367888877777776666553
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0011 Score=59.57 Aligned_cols=107 Identities=21% Similarity=0.395 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhh---h------HHHHHHHHHHHhhhhhhhhhhHHHHhhhcCCCcc---chhHHHHHHHHH
Q 043735 111 KSMLFGGVLFFAGALINGFAQ---G------VWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKY---RGALNIGFQLSI 178 (336)
Q Consensus 111 ~~l~~~~~~~~i~~~~~~~~~---~------~~~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~ 178 (336)
|.+.++.++..++.++..++. . .+.++++..+.++|.|..-+...++.+|.+++++ |......+..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 456778888888887744332 2 2578888999999999999999999999998763 466777899999
Q ss_pred HHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhc
Q 043735 179 TIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSL 220 (336)
Q Consensus 179 ~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (336)
++|..++..+.+++.+ +.||.+.|.+.++..+++.+..+
T Consensus 82 n~G~~~~~~~~~~i~~---~~~~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQ---NYGWFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp HHHHHHHHHCCCHHHH---CS-HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhcccchhhcc---ccchhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999887 46799999887766655555443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00046 Score=59.52 Aligned_cols=210 Identities=11% Similarity=0.090 Sum_probs=129.3
Q ss_pred HHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHHHHhhhcCCCccchhHHH
Q 043735 93 ALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNI 172 (336)
Q Consensus 93 ~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 172 (336)
+.+.-++.=.+.|-.--|++++.-.+...++..+..+.++.+.+=+.-++.|...+. ..+.++++.+..+++++.++.+
T Consensus 55 YLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAa-EIAYysYIYs~Vd~~~Yqrvt~ 133 (433)
T KOG3810|consen 55 YLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAA-EIAYYSYIYSKVDPEMYKRVTG 133 (433)
T ss_pred HHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHH-HHhhhheeeeecCHHHHHHHHH
Confidence 445555666789988889999999888889998999999998888888888987654 5666788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCCChHHHHhcCChHHHHHHHHHHcCCCcch
Q 043735 173 GFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEAREKLRKIRGVNDVD 252 (336)
Q Consensus 173 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (336)
....+.-.|...+..++-.+..... .++...-.+......++.+..+++|..+|....+.++++.. ..+..+.+. .
T Consensus 134 y~RaA~L~g~~~g~vlaQlLvs~~~-~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~~--v~~~e~~~~-~ 209 (433)
T KOG3810|consen 134 YCRAAFLVGKFVGSVLAQLLVSLET-LSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKIS--VGDLEEMNP-Q 209 (433)
T ss_pred HhHHHHHHHhHHHhHHHHHHhhhcc-cchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccce--eccchhcCc-c
Confidence 8888888888877777766665321 33444444544444555566678887765443333222110 000000000 0
Q ss_pred HHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHHHhc
Q 043735 253 EEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFNTI 313 (336)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (336)
.+..+.. +.....+.+-++....++......+.+....++++.+.+|...+-++.
T Consensus 210 ~~~~~~l------~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~ 264 (433)
T KOG3810|consen 210 ASYMSYL------RGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEV 264 (433)
T ss_pred chhhHHH------HHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhh
Confidence 0000000 000111111122223333455566667777778888888887777665
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00069 Score=56.49 Aligned_cols=87 Identities=16% Similarity=0.248 Sum_probs=65.5
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVP 155 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~ 155 (336)
|....+++.+..+.+-...+...+.|-++||-|||+.-+.-++...+++ +.-.++++-.++++|.+-|+..+..++.--
T Consensus 68 gFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGiaTsLLFSaFE 146 (454)
T KOG4332|consen 68 GFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGIATSLLFSAFE 146 (454)
T ss_pred CccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhHHHHHHHHHHH
Confidence 6778888888777777778888889999999999996554444444444 234467888999999999999888777666
Q ss_pred H-HhhhcCC
Q 043735 156 L-YLSEMAP 163 (336)
Q Consensus 156 ~-~~~~~~~ 163 (336)
+ +++|--.
T Consensus 147 sWliaEHne 155 (454)
T KOG4332|consen 147 SWLIAEHNE 155 (454)
T ss_pred HHHHHHhhh
Confidence 5 5566553
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0028 Score=58.24 Aligned_cols=151 Identities=13% Similarity=0.141 Sum_probs=105.8
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhh----------hhHHHHHHHHHHHhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFA----------QGVWMLIVGRLLLGF 145 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~----------~~~~~~~~~r~l~g~ 145 (336)
|+|+...+.+..+..++..+|..+.....-++.-|+++.++.++.++..+.-... ++.+..+.--++..+
T Consensus 251 ~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~ 330 (433)
T PF03092_consen 251 HFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEV 330 (433)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHH
Confidence 4888888999988889999999999888888888999988888777766532211 122222333355555
Q ss_pred hhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccC----Cc-hhHHHHhhhHHHHHHHHHhhc
Q 043735 146 GIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKG----GW-GWRLSLGGAMVPALIITIGSL 220 (336)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~----~~-~w~~~~~~~~~~~~~~~~~~~ 220 (336)
..+..+-....+++|..|+..-|...++.....++|..++..++..+.+..+ ++ +-.+..++..+..++...+..
T Consensus 331 ~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~ 410 (433)
T PF03092_consen 331 IGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLF 410 (433)
T ss_pred HHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 5566666667889999999999999999999999999999998888876433 11 122333444444444444455
Q ss_pred ccCCCh
Q 043735 221 VLPDTP 226 (336)
Q Consensus 221 ~~~e~~ 226 (336)
++|+..
T Consensus 411 lLp~~~ 416 (433)
T PF03092_consen 411 LLPPQK 416 (433)
T ss_pred HcCCCc
Confidence 677643
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0048 Score=54.20 Aligned_cols=133 Identities=21% Similarity=0.279 Sum_probs=80.6
Q ss_pred HHHhhhccccccccchhhHHhhhccchhhhcccCCCCcccccCCCchhHHHHHHHHHHHHHHHHHhHHhhh-----hhch
Q 043735 35 LIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQANSSTNQYCQYNSETLTLFTSSLYLAALLSSLVASSVTR-----KFGR 109 (336)
Q Consensus 35 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d-----r~Gr 109 (336)
...|.-.+..+ .+|.+++.- |.|.++.+....++. -.--.+.|.++.| |+||
T Consensus 41 llQGiP~GL~~---~iP~lL~ak------------------~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~Gr 97 (510)
T KOG3574|consen 41 LLQGIPLGLIG---AIPLLLQAK------------------GVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGR 97 (510)
T ss_pred HHcCCchhHhh---hhHHHhcCC------------------Ccchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhcc
Confidence 44555555543 567777643 566666554433221 1233578889999 9999
Q ss_pred hHHHHH-HHHHHHHHHHHHHh-----------hhhHHHHHHHHHHHhhhhhhhhhhHHHHhhhcCCCccchhHHHHHHHH
Q 043735 110 KKSMLF-GGVLFFAGALINGF-----------AQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLS 177 (336)
Q Consensus 110 r~~l~~-~~~~~~i~~~~~~~-----------~~~~~~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 177 (336)
||.-+. +..+.+..+...+. .++...+....++..+..+.--.+.-...-.+.++++-|.+......+
T Consensus 98 rksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg 177 (510)
T KOG3574|consen 98 RKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVG 177 (510)
T ss_pred ccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHH
Confidence 984322 22222222222222 123333444556677766666666667777888888899999999888
Q ss_pred HHHHHHHHHHHHH
Q 043735 178 ITIGILIANVLNY 190 (336)
Q Consensus 178 ~~~g~~~~~~l~~ 190 (336)
.+.|.+++..+.-
T Consensus 178 ~~~GyfL~~~ifL 190 (510)
T KOG3574|consen 178 QTAGYFLGNVVFL 190 (510)
T ss_pred HhhhHHhhcceee
Confidence 8888888765543
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0041 Score=55.78 Aligned_cols=150 Identities=17% Similarity=-0.005 Sum_probs=92.2
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhch-hHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGR-KKSMLFGGVLFFAGALINGFA----QGVWMLIVGRLLLGFGIGFA 150 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Gr-r~~l~~~~~~~~i~~~~~~~~----~~~~~~~~~r~l~g~~~~~~ 150 (336)
|.+....|++.....++.++++.+.|.+.||... |.+.+.......++.+..... .+.+.++..-.+.|++....
T Consensus 297 gY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~ 376 (480)
T KOG2563|consen 297 GYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGY 376 (480)
T ss_pred cCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCC
Confidence 4555778999999999999999999999999865 555555555555553222221 12344555667778888888
Q ss_pred hhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHH-hhhHHHHHHHHHhhcccCCC
Q 043735 151 NQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSL-GGAMVPALIITIGSLVLPDT 225 (336)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~-~~~~~~~~~~~~~~~~~~e~ 225 (336)
.|...-+-.|..-|..=+...|..+....+-+.+-.++.+...+..+..+|.... +......++......++++.
T Consensus 377 ~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~ 452 (480)
T KOG2563|consen 377 LPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPD 452 (480)
T ss_pred CCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhh
Confidence 8888888888754443456667666666666666666666665533222343322 23333333334444455443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.15 Score=47.94 Aligned_cols=116 Identities=17% Similarity=0.117 Sum_probs=67.4
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHH---HHHHHHHhhhh----H-HHHHHHHHHHhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFF---AGALINGFAQG----V-WMLIVGRLLLGFGI 147 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~---i~~~~~~~~~~----~-~~~~~~r~l~g~~~ 147 (336)
|-+....+.+.+++..|..+|+.+++++.++--|+. ......+.. ++..+...... . ..++...++.++..
T Consensus 46 G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~-~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~ 124 (521)
T PRK03612 46 GDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGF-VAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLI 124 (521)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777899999999999999999998874433332 222111111 11111111111 1 12233445667778
Q ss_pred hhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 043735 148 GFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFA 193 (336)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~ 193 (336)
|...|....+..+... ++-+...+-.+....+|+++|.++.+++.
T Consensus 125 G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vL 169 (521)
T PRK03612 125 GMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLL 169 (521)
T ss_pred HHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHH
Confidence 8888877766655332 12345566666677777777777766654
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.027 Score=51.37 Aligned_cols=115 Identities=18% Similarity=0.179 Sum_probs=85.8
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHh---hh-------hHHHHHHHHHHHhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGF---AQ-------GVWMLIVGRLLLGF 145 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~---~~-------~~~~~~~~r~l~g~ 145 (336)
|+++..+|..-+...+....+.+...++.+|+|..|.=.++......+..++.. .+ +...++.+-.+.-+
T Consensus 289 G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~ 368 (432)
T PF06963_consen 289 GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRI 368 (432)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999998887777766655544432 11 12223333333333
Q ss_pred hhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 043735 146 GIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNY 190 (336)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~ 190 (336)
|.=..-....-++.|..|+++||...+.-+...++...+...+.-
T Consensus 369 GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~i 413 (432)
T PF06963_consen 369 GLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTI 413 (432)
T ss_pred HHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 333345566778899999999999999999888888887765544
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.019 Score=51.50 Aligned_cols=114 Identities=17% Similarity=0.147 Sum_probs=82.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHH---HHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHH
Q 043735 79 SETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAG---ALINGFAQGVWMLIVGRLLLGFGIGFANQSVP 155 (336)
Q Consensus 79 ~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~---~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~ 155 (336)
+.+..+....+.+|-.++.--...+ |+-|-+++.+--++..+. ..+.-+.++.|.+++.-+..|+..|..+....
T Consensus 280 r~~Y~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF 357 (402)
T PF02487_consen 280 RDQYRWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTF 357 (402)
T ss_pred HHHHHHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 5677888888888877775543322 342323222222222222 22333457888888899999999999999999
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043735 156 LYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAK 194 (336)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~ 194 (336)
..+.|-.++++|..+++....+-++|..++.+++..+.+
T Consensus 358 ~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~ 396 (402)
T PF02487_consen 358 YRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEP 396 (402)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988876654
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.13 Score=47.14 Aligned_cols=111 Identities=22% Similarity=0.251 Sum_probs=87.7
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHhhhhhchh-------HHHHHHHHHHHHHHHHHHhh----------hhHHHHHHHHHH
Q 043735 80 ETLTLFTSSLYLAALLSSLVASSVTRKFGRK-------KSMLFGGVLFFAGALINGFA----------QGVWMLIVGRLL 142 (336)
Q Consensus 80 ~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr-------~~l~~~~~~~~i~~~~~~~~----------~~~~~~~~~r~l 142 (336)
-..++.++...+.-++.+++..++-.+.++| .=+-+++.+++.+.++.... .+.++++...++
T Consensus 324 vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l 403 (498)
T COG3104 324 VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVL 403 (498)
T ss_pred cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHH
Confidence 3457888999999999998888888885544 12455566666655544432 256888899999
Q ss_pred HhhhhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 043735 143 LGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNY 190 (336)
Q Consensus 143 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~ 190 (336)
+++|+=...|+..+++....|++-.+..++.+......|..++..+++
T Consensus 404 ~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 404 QSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred HHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence 999999999999999999999988899999999888888888877766
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.67 Score=43.22 Aligned_cols=117 Identities=15% Similarity=0.200 Sum_probs=80.5
Q ss_pred CCchhHHHHHHHHH-HHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhh---------hh---------------
Q 043735 78 NSETLTLFTSSLYL-AALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFA---------QG--------------- 132 (336)
Q Consensus 78 s~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~---------~~--------------- 132 (336)
+.+.+..+-....+ ...+......++++|++|++++-...........+.++. ++
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 45666666665555 455667789999999999999887766666555544431 11
Q ss_pred -------HHHHHHHHHHHhhhhhhhhh-hHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043735 133 -------VWMLIVGRLLLGFGIGFANQ-SVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAK 194 (336)
Q Consensus 133 -------~~~~~~~r~l~g~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~ 194 (336)
.|...+...+.-+-.....+ .-+.+.+|.++.++-.+..+++..+.++|.++++.+...+.+
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222223333332233333 457889999999998999999999999999999988888776
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.43 Score=43.83 Aligned_cols=106 Identities=19% Similarity=0.326 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhh---hhchhHHHHHHHHHHHHHHHHHHhh------------------hhHHHHHHHHH
Q 043735 83 TLFTSSLYLAALLSSLVASSVTR---KFGRKKSMLFGGVLFFAGALINGFA------------------QGVWMLIVGRL 141 (336)
Q Consensus 83 ~~~~~~~~~~~~i~~~~~g~l~d---r~Grr~~l~~~~~~~~i~~~~~~~~------------------~~~~~~~~~r~ 141 (336)
+...-...++..++..+.+.+.+ |+||++.+..+..+..+..++.... +++....+.-+
T Consensus 282 ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~ 361 (461)
T KOG3098|consen 282 AIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGF 361 (461)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHH
Confidence 34444445566666677777764 5789999988888888887666442 23456677778
Q ss_pred HHhhhhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHH
Q 043735 142 LLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLN 189 (336)
Q Consensus 142 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~ 189 (336)
+.|++-+........++.+.+ +++|..+.+++-.-..++..++-+..
T Consensus 362 l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~ 408 (461)
T KOG3098|consen 362 LLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFS 408 (461)
T ss_pred HHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999 56688888877777777766654443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.84 Score=41.97 Aligned_cols=118 Identities=12% Similarity=0.158 Sum_probs=85.6
Q ss_pred CCchhHHHHHHHHH-HHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhh---------hh---------------
Q 043735 78 NSETLTLFTSSLYL-AALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFA---------QG--------------- 132 (336)
Q Consensus 78 s~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~---------~~--------------- 132 (336)
+++.+.++-+...+ ++.+..++.+++.+++.|++++-..+.....+.+++++. ++
T Consensus 59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l 138 (509)
T COG3202 59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL 138 (509)
T ss_pred cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence 45666777777777 778888999999999999999988777777777666542 11
Q ss_pred --------HHHHHHHHHHHhhhhhhhhh-hHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 043735 133 --------VWMLIVGRLLLGFGIGFANQ-SVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKI 195 (336)
Q Consensus 133 --------~~~~~~~r~l~g~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 195 (336)
.|...+...+.-+-.....+ .-+....|.++.++-.|..+.++.+.+++..++..+..++.+.
T Consensus 139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 139 KWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred eeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 03333333333332222233 5567888999999889999999999999999999888888763
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.022 Score=51.42 Aligned_cols=120 Identities=13% Similarity=0.047 Sum_probs=69.7
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhch-------hHHHHHHHHHHHHHH---HHHHh--hhhHHHHHHHHHHH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGR-------KKSMLFGGVLFFAGA---LINGF--AQGVWMLIVGRLLL 143 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Gr-------r~~l~~~~~~~~i~~---~~~~~--~~~~~~~~~~r~l~ 143 (336)
|.+..+..++..+...+..+|.+++|.++||+-| .+.=.+...+.+..+ +.+.. ..+...+....++.
T Consensus 279 ~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~ 358 (493)
T KOG1330|consen 279 GFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLV 358 (493)
T ss_pred CCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3455566788888889999999999999999533 222222222222222 11111 11222222333444
Q ss_pred hhhh-hhhhhhHHHHhhhcCCCccchhHHHHHHHHH-HHHHHHHHHHHHHhhcc
Q 043735 144 GFGI-GFANQSVPLYLSEMAPYKYRGALNIGFQLSI-TIGILIANVLNYFFAKI 195 (336)
Q Consensus 144 g~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~~~~l~~~~~~~ 195 (336)
|... -........+..|..|+++|..+.++-.... .+|..-+|.+.+.+.+.
T Consensus 359 g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~ 412 (493)
T KOG1330|consen 359 GETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDK 412 (493)
T ss_pred HHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHH
Confidence 4432 2234455567889999999999999865554 44555556577777664
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.26 Score=46.90 Aligned_cols=140 Identities=15% Similarity=0.165 Sum_probs=102.3
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhh-chhHHHHHHHHHHHHHHHHHHhhhh----------------------
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKF-GRKKSMLFGGVLFFAGALINGFAQG---------------------- 132 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~~---------------------- 132 (336)
|.+...+.-..+.+.-......+.++.++|-| ||-+.+.++.++..++.++...+..
T Consensus 69 ~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s 148 (571)
T KOG1237|consen 69 HASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPS 148 (571)
T ss_pred ccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcc
Confidence 66667777788888888888889999999965 9999999998888888654433211
Q ss_pred ---HHHHHHHHHHHhhhhhhhhhhHHHHhhhcCC---Cccc---hhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHH
Q 043735 133 ---VWMLIVGRLLLGFGIGFANQSVPLYLSEMAP---YKYR---GALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRL 203 (336)
Q Consensus 133 ---~~~~~~~r~l~g~~~~~~~~~~~~~~~~~~~---~~~r---~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~ 203 (336)
...+....-+..+|.|+.-+.....-+|-++ ++++ ...+..+....++|..++..+..+..+ ..+|.+
T Consensus 149 ~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~---~~~w~l 225 (571)
T KOG1237|consen 149 KLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQD---NVGWKL 225 (571)
T ss_pred hHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhh---ccccee
Confidence 1345566667778889989999999999998 3222 356677888888898888877777765 356888
Q ss_pred HHhhhHHHHHHHHHh
Q 043735 204 SLGGAMVPALIITIG 218 (336)
Q Consensus 204 ~~~~~~~~~~~~~~~ 218 (336)
.|.+..+...+++++
T Consensus 226 gf~i~~~~~~lai~i 240 (571)
T KOG1237|consen 226 GFGIPTVLNALAILI 240 (571)
T ss_pred eccHHHHHHHHHHHH
Confidence 887666554444443
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.14 Score=46.98 Aligned_cols=135 Identities=13% Similarity=0.099 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHH-h----h---hhHHHHHHHHHHHhhhhhhhhhhHHHHhh
Q 043735 88 SLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALING-F----A---QGVWMLIVGRLLLGFGIGFANQSVPLYLS 159 (336)
Q Consensus 88 ~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~-~----~---~~~~~~~~~r~l~g~~~~~~~~~~~~~~~ 159 (336)
...+...+..+..-.+..|+..|.-+..++++..+..+... + . ..++..++.-++.|++.+..+.....+.+
T Consensus 53 ~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~ 132 (437)
T TIGR00939 53 ASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINSGMALLQGSLFGLAG 132 (437)
T ss_pred HHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHhhhhhhcccchhhcc
Confidence 33444444444445555556543333334333222222211 1 1 24566667778889988888888777766
Q ss_pred hcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccC-----CchhHHHHhhhHHHHHHHHHhhcccCCChH
Q 043735 160 EMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKG-----GWGWRLSLGGAMVPALIITIGSLVLPDTPN 227 (336)
Q Consensus 160 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~-----~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~ 227 (336)
.+|++.- ..+..+.+++++++.++--....... ..+-...|.+..++.+++++....+++.|-
T Consensus 133 -~fp~~~~----~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~~a~~v~l~~i~~~~~l~k~~~ 200 (437)
T TIGR00939 133 -VFPSTYS----SAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFGTPCVVQLICIVCYLLLPKLPF 200 (437)
T ss_pred -cCCHHHH----HHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 4665433 33444444444443333222111111 112223344444444555555555666553
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.11 Score=47.74 Aligned_cols=50 Identities=14% Similarity=0.048 Sum_probs=33.2
Q ss_pred HhhhhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 043735 143 LGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFF 192 (336)
Q Consensus 143 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 192 (336)
.-+-.+.--.+.-...-.+.+++.++.+......+.++|.+++..+.-.+
T Consensus 128 L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlal 177 (544)
T PF13000_consen 128 LVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLAL 177 (544)
T ss_pred HHHHHccCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhh
Confidence 33333333333445555667888899999999999999888876655444
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.61 E-value=1.6 Score=39.34 Aligned_cols=93 Identities=19% Similarity=0.120 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHH
Q 043735 132 GVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVP 211 (336)
Q Consensus 132 ~~~~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~ 211 (336)
.+...++...+.+++.|..+.......++ +|++.-...++..+.++.+-+.+--..-....+. ..+-...|.+..+.
T Consensus 116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm~G~a~aG~l~Sl~~i~tka~~~~~--~~sA~~yF~~s~~~ 192 (406)
T KOG1479|consen 116 FFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVMSGQALAGTLTSLLRILTKAAFSDS--RTSALIYFITSTVI 192 (406)
T ss_pred hHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHHhcchhHhHHHHHHHHHHHHhcCCC--CceeehhHHHHHHH
Confidence 35566667778888888887777776666 5555444444433333333322221111111111 12333445555555
Q ss_pred HHHHHHhhcccCCChH
Q 043735 212 ALIITIGSLVLPDTPN 227 (336)
Q Consensus 212 ~~~~~~~~~~~~e~~~ 227 (336)
.++++++...+|+.|-
T Consensus 193 ~llC~i~y~~l~~lpf 208 (406)
T KOG1479|consen 193 LLLCFVLYLVLPKLPF 208 (406)
T ss_pred HHHHHHHHHHhhcchH
Confidence 5555555556666653
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.029 Score=51.67 Aligned_cols=57 Identities=14% Similarity=0.265 Sum_probs=45.5
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHH-HHHHHHHHHHHHHhh
Q 043735 74 YCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLF-GGVLFFAGALINGFA 130 (336)
Q Consensus 74 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~-~~~~~~i~~~~~~~~ 130 (336)
++|+++.+.|.++..--+..+++.+++|.++||+-+||.+++ ++++.....++..+.
T Consensus 40 QLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv 97 (618)
T KOG3762|consen 40 QLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFV 97 (618)
T ss_pred HcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeec
Confidence 349999999999999999999999999999999977665555 455555555655553
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.15 Score=49.30 Aligned_cols=51 Identities=25% Similarity=0.268 Sum_probs=41.0
Q ss_pred cCCCchhHHHHHHHHH-HHHHHHHHhHHhhhhhc--hhHHHHHHHHHHHHHHHH
Q 043735 76 QYNSETLTLFTSSLYL-AALLSSLVASSVTRKFG--RKKSMLFGGVLFFAGALI 126 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~G--rr~~l~~~~~~~~i~~~~ 126 (336)
|++..+++++.+...+ +.+++.+++|+++||++ .|+.+.++.++..++.++
T Consensus 362 g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 362 GISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred CCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 8999999999988776 67899999999999998 456777776666666543
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.11 Score=47.94 Aligned_cols=66 Identities=14% Similarity=0.202 Sum_probs=50.9
Q ss_pred HHHhhhhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhH
Q 043735 141 LLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAM 209 (336)
Q Consensus 141 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~ 209 (336)
++.|++.-.......++-+|..-+++++...++++....++..++|++........ |.|+...+.+
T Consensus 396 ~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~---g~~~v~~~~~ 461 (488)
T KOG2325|consen 396 VVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLS---GPRPVWIILL 461 (488)
T ss_pred heeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhc---CccHHHHHHH
Confidence 55666666666677788899999999999999999999999999999888777643 3454444333
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=90.58 E-value=0.076 Score=50.20 Aligned_cols=65 Identities=22% Similarity=0.328 Sum_probs=0.0
Q ss_pred ccccccchhhHHhhhccchhhhcccCCCCcccccCCCchhHHHHHHHHH-HHHHHHHHhHHhhhhhc--hhHHHHHHHHH
Q 043735 43 ISGGVTSMPSFLKRFFPSVYRKQQANSSTNQYCQYNSETLTLFTSSLYL-AALLSSLVASSVTRKFG--RKKSMLFGGVL 119 (336)
Q Consensus 43 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~G--rr~~l~~~~~~ 119 (336)
..+....+|+|++. +|++++++++++..+..+ +.++|.+++|++..|+. .|..+.+..+.
T Consensus 321 ~~G~~tF~pKylE~-----------------QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~ 383 (539)
T PF03137_consen 321 VSGFATFLPKYLES-----------------QFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVV 383 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHH-----------------HhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHH
Confidence 34555566777643 458999999998877776 77899999999999874 45555555444
Q ss_pred HHHHH
Q 043735 120 FFAGA 124 (336)
Q Consensus 120 ~~i~~ 124 (336)
..++.
T Consensus 384 ~~v~~ 388 (539)
T PF03137_consen 384 SIVSV 388 (539)
T ss_dssp -----
T ss_pred HHHHH
Confidence 44444
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.48 E-value=1.3 Score=38.38 Aligned_cols=116 Identities=16% Similarity=0.163 Sum_probs=78.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHHhhhh-hchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHHHH
Q 043735 79 SETLTLFTSSLYLAALLSSLVASSVTRK-FGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLY 157 (336)
Q Consensus 79 ~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~~~ 157 (336)
++|.-|....+.+|-.+..--....-=+ .=--.++..-.++..+.-.+..+.++++...+.-+.-|+-.|..+....--
T Consensus 287 ~sqYRwyqvlYQlGVFiSRSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~ 366 (409)
T KOG3880|consen 287 DSQYRWYQVLYQLGVFISRSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHN 366 (409)
T ss_pred hhcchhhheeeeeeEEEEeccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHH
Confidence 3457788888877654433222111001 000112233334444444566678899999999999999888888888877
Q ss_pred hhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043735 158 LSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAK 194 (336)
Q Consensus 158 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~ 194 (336)
+.+-.++++|..+++...++-.+|..++.+++-.+.+
T Consensus 367 i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh~ 403 (409)
T KOG3880|consen 367 IHKETEPDVREFAMSAVSISDSIGIFLAGLLALPLHN 403 (409)
T ss_pred HhhcCCchHHHHhHhhheecchhhHHHHHHHhccchh
Confidence 7887888999999999999999999998888766543
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=90.24 E-value=12 Score=34.56 Aligned_cols=108 Identities=17% Similarity=0.180 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhhchh--HHHHH--HHHHHHHHHHHHHhh---------hhHHHHHHHHHHHhhhhhh
Q 043735 83 TLFTSSLYLAALLSSLVASSVTRKFGRK--KSMLF--GGVLFFAGALINGFA---------QGVWMLIVGRLLLGFGIGF 149 (336)
Q Consensus 83 ~~~~~~~~~~~~i~~~~~g~l~dr~Grr--~~l~~--~~~~~~i~~~~~~~~---------~~~~~~~~~r~l~g~~~~~ 149 (336)
-.+...+.++=.+|..+..+.. .-++| ++++. .-++.....++|... ++-+..++..++.|+..|-
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 3455556666666666443321 11222 33322 222333333444322 3456667779999999999
Q ss_pred hhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 043735 150 ANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYF 191 (336)
Q Consensus 150 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~ 191 (336)
..+.+..+..+..++++|..+..+...+..+|..+|..++-.
T Consensus 389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~ 430 (437)
T TIGR00939 389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL 430 (437)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888888888888888888766543
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=89.16 E-value=5.3 Score=36.31 Aligned_cols=95 Identities=11% Similarity=0.070 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHH--HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHHHHhh
Q 043735 82 LTLFTSSLYLAALLSSLVASSVTRKFGRKKSML--FGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLS 159 (336)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~--~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~~~~~ 159 (336)
-|.+.++..+.++++++..|++-.++.+..-+. ...++.+...++++..+++|..+++.++.+.......+.+..-++
T Consensus 287 NG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA 366 (412)
T PF01770_consen 287 NGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIA 366 (412)
T ss_pred chHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388899999999999999999977777754443 344555555677788889999999998888887777777777777
Q ss_pred hcCCCccchhHHHHHHH
Q 043735 160 EMAPYKYRGALNIGFQL 176 (336)
Q Consensus 160 ~~~~~~~r~~~~~~~~~ 176 (336)
.....+.-|...|+...
T Consensus 367 ~~l~~e~yaLVFGiNtf 383 (412)
T PF01770_consen 367 KNLSEERYALVFGINTF 383 (412)
T ss_pred HhccccceeeeeeeHHH
Confidence 76665555665555443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.52 E-value=15 Score=33.30 Aligned_cols=106 Identities=16% Similarity=0.172 Sum_probs=68.1
Q ss_pred hHHHHHH-HHHHHHHHHHHhHHhhhhhchhHHHHHHHH-HHHHHHHH-HH------hhhhHHHHHHHHHHHhhhhhhhhh
Q 043735 82 LTLFTSS-LYLAALLSSLVASSVTRKFGRKKSMLFGGV-LFFAGALI-NG------FAQGVWMLIVGRLLLGFGIGFANQ 152 (336)
Q Consensus 82 ~~~~~~~-~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~-~~~i~~~~-~~------~~~~~~~~~~~r~l~g~~~~~~~~ 152 (336)
....... +.+.-.+|.+.+.++-++ +||...+...+ +..+..+. |- +..+-+.++....+.|+..|-..+
T Consensus 284 ~~~~~~l~fN~~d~vG~~~a~~~~~~-~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlts 362 (406)
T KOG1479|consen 284 ALLLVFLSFNVFDLIGSILAALLTWP-DPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTS 362 (406)
T ss_pred HHHHHHHHhHHHHHhhhhhhhcccCC-CCceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhh
Confidence 3445555 778888887777776555 34443322211 12222222 21 234556777888999999998888
Q ss_pred hHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHH
Q 043735 153 SVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVL 188 (336)
Q Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l 188 (336)
....+..+-.|++++..+..+.......|-..|..+
T Consensus 363 l~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~ 398 (406)
T KOG1479|consen 363 LIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL 398 (406)
T ss_pred heehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 888999999999888776666666666666655543
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=87.75 E-value=1.1 Score=30.04 Aligned_cols=44 Identities=14% Similarity=0.334 Sum_probs=34.8
Q ss_pred HHHHhhchhHHHHcHHHHHHhcCCCCcHHHHHHHHHhHhhheec
Q 043735 292 FFQQLTGINVIMFYAPVLFNTIGFGNDASLMSAVITGLVNACAT 335 (336)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~G~s~~~~~~~~~~~~~~~~~~~ 335 (336)
.+..++....+.-|.|.++++.|++..+.+.+.++..+..++++
T Consensus 9 yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~ 52 (77)
T PF12832_consen 9 YFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAP 52 (77)
T ss_pred HHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 34444555667788999999999999999999999888777653
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=87.36 E-value=3.5 Score=38.35 Aligned_cols=95 Identities=11% Similarity=0.044 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhhchh--HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHHHHhhh
Q 043735 83 TLFTSSLYLAALLSSLVASSVTRKFGRK--KSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSE 160 (336)
Q Consensus 83 ~~~~~~~~~~~~i~~~~~g~l~dr~Grr--~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~~~~~~ 160 (336)
|.+.++..+..++.++..|++-.++.|- ..+.+..++.+...++++..+|+|..+++.++.+.......+.+..-++.
T Consensus 301 G~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~ 380 (511)
T TIGR00806 301 GAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIAS 380 (511)
T ss_pred CHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888889999999997777552 34444455556666777888999999999999999999999999888888
Q ss_pred cCCCccchhHHHHHHHH
Q 043735 161 MAPYKYRGALNIGFQLS 177 (336)
Q Consensus 161 ~~~~~~r~~~~~~~~~~ 177 (336)
....+.-|...|+.+..
T Consensus 381 ~L~~~~~aLvFGiNtfv 397 (511)
T TIGR00806 381 SLSKELCALVFGINTFV 397 (511)
T ss_pred HhcccceEEEEecHHHH
Confidence 88776667777766544
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.22 E-value=27 Score=31.11 Aligned_cols=85 Identities=16% Similarity=0.066 Sum_probs=58.3
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHH----HHH-Hh----hhhHHHHHHHHHHHhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGA----LIN-GF----AQGVWMLIVGRLLLGFG 146 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~----~~~-~~----~~~~~~~~~~r~l~g~~ 146 (336)
|-+--|.+.+.+.+..++.+|+...-++.|.--.-+.+..-+++..++. ++. .| .++.+.++++.++.|.-
T Consensus 39 G~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~L 118 (508)
T COG4262 39 GGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGVL 118 (508)
T ss_pred CCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 4456677899999999999999999888775444333333333332221 111 22 24667888889999999
Q ss_pred hhhhhhhHHHHhhh
Q 043735 147 IGFANQSVPLYLSE 160 (336)
Q Consensus 147 ~~~~~~~~~~~~~~ 160 (336)
.|...|....+...
T Consensus 119 VG~EiPL~mrml~~ 132 (508)
T COG4262 119 VGAEIPLLMRMLQR 132 (508)
T ss_pred HhcchHHHHHHHHH
Confidence 99999998887766
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.34 E-value=5.3 Score=34.99 Aligned_cols=105 Identities=26% Similarity=0.310 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHHHHhhhcCCC--c
Q 043735 88 SLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPY--K 165 (336)
Q Consensus 88 ~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~~~~~~~~~~--~ 165 (336)
..++..+.++++.+.+.+++|-|+.+.++.......-. .-+-+.+..++-.-...|++.+..+..--.|+++.-.. +
T Consensus 66 ~~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA-~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~ 144 (390)
T KOG3097|consen 66 ALYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA-ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYAN 144 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHH
Confidence 44555667777777999999999998877666554332 22345677888888999999887765555554443211 1
Q ss_pred cc-------------hhHHHHHHHHHHHHHHHHHHHHHHhh
Q 043735 166 YR-------------GALNIGFQLSITIGILIANVLNYFFA 193 (336)
Q Consensus 166 ~r-------------~~~~~~~~~~~~~g~~~~~~l~~~~~ 193 (336)
.| |....+++...-.|..++..+.....
T Consensus 145 ~~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli~~~~~ 185 (390)
T KOG3097|consen 145 QRGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLIMTLFL 185 (390)
T ss_pred hhhhhccCceeeeehhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 44555666666666666665554443
|
|
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.19 E-value=6.2 Score=28.01 Aligned_cols=38 Identities=21% Similarity=0.185 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhh-chhHHHHHHHHHH
Q 043735 83 TLFTSSLYLAALLSSLVASSVTRKF-GRKKSMLFGGVLF 120 (336)
Q Consensus 83 ~~~~~~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~ 120 (336)
+.-.+.-+++..+.....||+.||| |-+++.++..++.
T Consensus 45 a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lll 83 (116)
T COG5336 45 AFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLL 83 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 4556667777778888889999997 5566554444333
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.42 E-value=1.2 Score=40.67 Aligned_cols=115 Identities=16% Similarity=0.023 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHHHHhhhc-
Q 043735 83 TLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEM- 161 (336)
Q Consensus 83 ~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~~~~~~~- 161 (336)
.|-..++.+...+.+...-++.||+|-|+++..+.....++..+.+..++.+.....+-..|+-.+....+.+..+++.
T Consensus 335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~ 414 (498)
T KOG0637|consen 335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYA 414 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHH
Confidence 4667777888889999999999999966666666665666666666666666666667666654444433333333221
Q ss_pred --------------------CCCccc--hhHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 043735 162 --------------------APYKYR--GALNIGFQLSITIGILIANVLNYFFAKIKG 197 (336)
Q Consensus 162 --------------------~~~~~r--~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~ 197 (336)
.....| |...++.+....+..++..+..+.+.+..+
T Consensus 415 ~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G 472 (498)
T KOG0637|consen 415 ILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFG 472 (498)
T ss_pred HhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcC
Confidence 112222 555566776666666666555555555443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 336 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 3e-27 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 6e-06
Identities = 22/148 (14%), Positives = 48/148 (32%), Gaps = 7/148 (4%)
Query: 83 TLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFA---QGVWMLIVG 139
L S+ Y + + A + +K K ++ G L+ GA + A + +VG
Sbjct: 64 GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVG 123
Query: 140 RLLLGFGIGFANQSVPLYLSEMAPYKYRGA-LNIG---FQLSITIGILIANVLNYFFAKI 195
++ G+G + +++ + P LN+ I ++ L
Sbjct: 124 LFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPH 183
Query: 196 KGGWGWRLSLGGAMVPALIITIGSLVLP 223
+ + + S+ P
Sbjct: 184 QSQDVLDKMSPEQLSAYKHSLVLSVQTP 211
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 5e-05
Identities = 18/122 (14%), Positives = 43/122 (35%), Gaps = 2/122 (1%)
Query: 98 LVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLY 157
A + + G K ++L G + + + FA +++ + L F + F Y
Sbjct: 277 FFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336
Query: 158 LSEMAPYKYRG-ALNIGFQLSITIGILIANVLN-YFFAKIKGGWGWRLSLGGAMVPALII 215
++ ++ + F + ++ +VL + I + + A+ LI
Sbjct: 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLIS 396
Query: 216 TI 217
Sbjct: 397 VF 398
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 7e-05
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 86 TSSLYLAAL-LSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLG 144
YL +S L ++ + GR+ +L G +F L+ + +LI + G
Sbjct: 40 VMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQG 99
Query: 145 FGIG 148
G G
Sbjct: 100 MGTG 103
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 4e-04
Identities = 29/137 (21%), Positives = 56/137 (40%), Gaps = 10/137 (7%)
Query: 84 LFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLL 143
++ S +YL+ + VA R G + ++ +GGVL G ++ G L +L+
Sbjct: 62 IYASMVYLSGTIGGFVAD---RIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILI 118
Query: 144 GFGIGFANQSVPLYLSEM-APYKYR--GALNIGFQLSITIGILIANVLNYFFAKIKGGWG 200
G GF +V + + + R +I F I +G IA ++ + G
Sbjct: 119 IIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSI-FVFGINLGAFIAPLIVGAAQE---AAG 174
Query: 201 WRLSLGGAMVPALIITI 217
+ ++ A + I +
Sbjct: 175 YHVAFSLAAIGMFIGLL 191
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 336 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.95 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.94 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.9 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.85 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.77 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.61 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.52 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.46 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.42 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.37 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.34 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.99 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.79 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-31 Score=242.69 Aligned_cols=300 Identities=27% Similarity=0.506 Sum_probs=229.3
Q ss_pred CchHHHHHHHHHHHHHHHHhhhccccccccchhhHHhhhccchhhhcccCCCCcccccCCCchhHHHHHHHHHHHHHHHH
Q 043735 19 LTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQANSSTNQYCQYNSETLTLFTSSLYLAALLSSL 98 (336)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~ 98 (336)
..++.+.++++++++.+.+|||.++++.. +|.+.+.+.... +...+.+.++.+++.+++.+|..+|++
T Consensus 6 ~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~--~~~~~~~~~~~~----------~~~~~~~~~~~g~~~s~~~~G~~iG~~ 73 (491)
T 4gc0_A 6 NSSYIFSITLVATLGGLLFGYDTAVISGT--VESLNTVFVAPQ----------NLSESAANSLLGFCVASALIGCIIGGA 73 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHGGGGT--HHHHHHHHTGGG----------CCCHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred ChHHHhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCC----------CCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 33567888888899999999999888754 466666552111 111134456789999999999999999
Q ss_pred HhHHhhhhhchhHHHHHHHHHHHHHHHHHH------------------hhhhHHHHHHHHHHHhhhhhhhhhhHHHHhhh
Q 043735 99 VASSVTRKFGRKKSMLFGGVLFFAGALING------------------FAQGVWMLIVGRLLLGFGIGFANQSVPLYLSE 160 (336)
Q Consensus 99 ~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~------------------~~~~~~~~~~~r~l~g~~~~~~~~~~~~~~~~ 160 (336)
++|+++||+|||++++++.+++.+++++++ .++++++++++|+++|++.|...+..+.+++|
T Consensus 74 ~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E 153 (491)
T 4gc0_A 74 LGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAE 153 (491)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999988 47899999999999999999999999999999
Q ss_pred cCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccC-----CchhHHHHhhhHHHHHHHHHhhcccCCChHHHHhcCCh
Q 043735 161 MAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKG-----GWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQR 235 (336)
Q Consensus 161 ~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~-----~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 235 (336)
+.|+++|++..+..+.+..+|..+++.++.......+ .+.||+.+....++.++..+..+++||+|+|+..+++.
T Consensus 154 ~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~ 233 (491)
T 4gc0_A 154 LAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQ 233 (491)
T ss_dssp TSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCH
T ss_pred hCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCch
Confidence 9999999999999999999999999888776654321 35788888888888888888888999999999999999
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHHHhcCC
Q 043735 236 DEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFNTIGF 315 (336)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 315 (336)
+++++.+++...+++.+++..+.++..+.+++. ..... ....++.........+....+.+.+.+|.|.+.+..+.
T Consensus 234 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (491)
T 4gc0_A 234 EQAEGILRKIMGNTLATQAVQEIKHSLDHGRKT-GGRLL---MFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGA 309 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTHHH---HSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSC
T ss_pred hHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhh-hhHHH---HhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCC
Confidence 999888777654433332222222221111111 11111 12334455666666777788888899999999999988
Q ss_pred CCcHHHHHHHHHhHhhhee
Q 043735 316 GNDASLMSAVITGLVNACA 334 (336)
Q Consensus 316 s~~~~~~~~~~~~~~~~~~ 334 (336)
+.........+.++..+++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~ 328 (491)
T 4gc0_A 310 STDIALLQTIIVGVINLTF 328 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CccchhhHHHHHHHHHHHH
Confidence 8877776666666555443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-27 Score=214.96 Aligned_cols=243 Identities=16% Similarity=0.117 Sum_probs=180.2
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHhhhh
Q 043735 72 NQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGF----AQGVWMLIVGRLLLGFGI 147 (336)
Q Consensus 72 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~----~~~~~~~~~~r~l~g~~~ 147 (336)
.+++ .+..+.+++.+++.++..++++++|+++||+|||+++.++.++.+++.+++++ +++++.++++|++.|++.
T Consensus 55 ~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~ 133 (451)
T 1pw4_A 55 VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQ 133 (451)
T ss_dssp TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHH
T ss_pred HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHh
Confidence 5556 78999999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred hhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCch-hHHHHhhhHHHHHHHHHh-hcccCCC
Q 043735 148 GFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWG-WRLSLGGAMVPALIITIG-SLVLPDT 225 (336)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~-w~~~~~~~~~~~~~~~~~-~~~~~e~ 225 (336)
+...+....++.|++|+++|+++.++.+.+..+|..++|.+++.+.+. .+ ||+.|++.+++.++..+. .+++||+
T Consensus 134 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~w~~~f~~~~~~~~~~~~~~~~~~~~~ 210 (451)
T 1pw4_A 134 GMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW---FNDWHAALYMPAFCAILVALFAFAMMRDT 210 (451)
T ss_dssp HHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH---TCCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred hhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 999999999999999999999999999999999999999999887753 46 999999888776655444 4667887
Q ss_pred hHHHHhcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhh-ccccchhHHHHHHHHHHHHHhhchhHHHH
Q 043735 226 PNSMIERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNL-LKRKYRPHLTMAILIPFFQQLTGINVIMF 304 (336)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (336)
|+....+++++. .+ +.+.+. ++ +++++.+.++. .+...+++.++...+..++.....+....
T Consensus 211 ~~~~~~~~~~~~-----------~~-~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (451)
T 1pw4_A 211 PQSCGLPPIEEY-----------KN-DYPDDY-NE----KAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILD 273 (451)
T ss_dssp STTTCCCSCTTT-----------CC-C------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCCCChhhh-----------cc-cccccc-hh----hhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 753211111000 00 000000 00 00011111221 11222223344444455555556677888
Q ss_pred cHHHHHHh-cCCCCcHHHHHHHHHhHhhheec
Q 043735 305 YAPVLFNT-IGFGNDASLMSAVITGLVNACAT 335 (336)
Q Consensus 305 ~~~~~~~~-~G~s~~~~~~~~~~~~~~~~~~~ 335 (336)
+.|.++++ .|++..+++...++.+++.+++.
T Consensus 274 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 305 (451)
T 1pw4_A 274 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGT 305 (451)
T ss_dssp HHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999876 89999999998888888777653
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=204.85 Aligned_cols=227 Identities=12% Similarity=0.110 Sum_probs=173.1
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHhhhhhhhh
Q 043735 75 CQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALIN---GFAQGVWMLIVGRLLLGFGIGFAN 151 (336)
Q Consensus 75 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~---~~~~~~~~~~~~r~l~g~~~~~~~ 151 (336)
+|+|..+.+++.+++.++..++++++|+++||+|||+++.++.++.+++.+++ .++++++.++++|++.|++.+...
T Consensus 56 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~ 135 (438)
T 3o7q_A 56 FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLE 135 (438)
T ss_dssp SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhh
Confidence 49999999999999999999999999999999999999999999999999998 888999999999999999999999
Q ss_pred hhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhh-cccCC----------------c------hhHHHHhhh
Q 043735 152 QSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFA-KIKGG----------------W------GWRLSLGGA 208 (336)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~~----------------~------~w~~~~~~~ 208 (336)
+....++.|++|+++|+++.++.+.+..+|..++|.+++.+. +..+. + +||+.|++.
T Consensus 136 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 215 (438)
T 3o7q_A 136 TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMII 215 (438)
T ss_dssp HHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999887 43221 0 199999776
Q ss_pred HHHHHHHHHhhcc--cCCChHHHHhcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHH
Q 043735 209 MVPALIITIGSLV--LPDTPNSMIERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTM 286 (336)
Q Consensus 209 ~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (336)
+++.++..+..++ .||+++.. ++ + +++++.+.+++++++++. ++
T Consensus 216 ~~~~~~~~~~~~~~~~p~~~~~~---~~--------------~-------------~~~~~~~~~~~~~~~~~~----~~ 261 (438)
T 3o7q_A 216 VAIVLLVALLIMLTKFPALQSDN---HS--------------D-------------AKQGSFSASLSRLARIRH----WR 261 (438)
T ss_dssp HHHHHHHHHHHHHCCCCCCTTTC---CC--------------C-------------SSTTSHHHHHHHHTTCSH----HH
T ss_pred HHHHHHHHHHHHHHcCCcccccc---cc--------------c-------------ccccchhhhHHHHHhChH----HH
Confidence 6665544444333 35543210 00 0 000111123444554442 23
Q ss_pred HHHHHHHHHhhchhHHHHcHHHH-HHhc-CCCCcHHHHHHHHHhHhhheec
Q 043735 287 AILIPFFQQLTGINVIMFYAPVL-FNTI-GFGNDASLMSAVITGLVNACAT 335 (336)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~-G~s~~~~~~~~~~~~~~~~~~~ 335 (336)
...+..++..........+.|.+ +++. |++..+++...++..+..+++.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 312 (438)
T 3o7q_A 262 WAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGR 312 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHH
Confidence 33333444444556677888888 7665 9999999998888887776653
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.8e-24 Score=189.28 Aligned_cols=222 Identities=15% Similarity=0.207 Sum_probs=175.8
Q ss_pred ccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhh
Q 043735 73 QYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQ 152 (336)
Q Consensus 73 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~ 152 (336)
+++|.|.++.+++.+...++..+++++.|+++||+|||+++..+.++.+++.++..++++++.+++.|++.|++.+...+
T Consensus 28 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~ 107 (375)
T 2gfp_A 28 RDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGV 107 (375)
T ss_dssp TTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhh
Confidence 34499999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHH-hhcccCCChHHHHh
Q 043735 153 SVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITI-GSLVLPDTPNSMIE 231 (336)
Q Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~ 231 (336)
....++.|++|+++|+++.+..+.+..+|..++|.+++.+.+ ..+||+.+++.++..++..+ ..+++||+++..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 182 (375)
T 2gfp_A 108 MARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT---MWNWRACYLFLLVLCAGVTFSMARWMPETRPVD-- 182 (375)
T ss_dssp HHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC---HHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT--
T ss_pred hHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC--
Confidence 999999999999999999999999999999999999998876 35799999987777666555 345677765310
Q ss_pred cCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHHH
Q 043735 232 RGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFN 311 (336)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (336)
+ ++++.+.++++.++++ ..+...+..++..........+.|.+++
T Consensus 183 -~------------------------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (375)
T 2gfp_A 183 -A------------------------------PRTRLLTSYKTLFGNS----GFNCYLLMLIGGLAGIAAFEACSGVLMG 227 (375)
T ss_dssp -C------------------------------CCCCTTTCSTHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCSCSSH
T ss_pred -c------------------------------ccccHHHHHHHHhcCc----chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0011122334444432 2333333344444455666777777776
Q ss_pred h-cCCCCcHHHHHHHHHhHhhhee
Q 043735 312 T-IGFGNDASLMSAVITGLVNACA 334 (336)
Q Consensus 312 ~-~G~s~~~~~~~~~~~~~~~~~~ 334 (336)
+ .|++..+++...+..+++.+++
T Consensus 228 ~~~g~~~~~~g~~~~~~~~~~~~~ 251 (375)
T 2gfp_A 228 AVLGLSSMTVSILFILPIPAAFFG 251 (375)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHH
Confidence 5 7888888888888777776654
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-20 Score=171.83 Aligned_cols=145 Identities=19% Similarity=0.242 Sum_probs=131.0
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhh-hchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhh
Q 043735 72 NQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRK-FGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFA 150 (336)
Q Consensus 72 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~ 150 (336)
++++|+|..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.++++++++++.++++|++.|++.+..
T Consensus 46 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 125 (491)
T 4aps_A 46 TGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFL 125 (491)
T ss_dssp HTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 34569999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhhcCCCcc--chhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhh
Q 043735 151 NQSVPLYLSEMAPYKY--RGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGS 219 (336)
Q Consensus 151 ~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 219 (336)
.+....++.|++|+++ |+.+.+.++.+.++|..++|.+++.+.+. .|||+.|++.++..++..+..
T Consensus 126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~g~~~~f~~~~~~~~~~~~~~ 193 (491)
T 4aps_A 126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA---AGYHVAFSLAAIGMFIGLLVY 193 (491)
T ss_dssp HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 67788889999999999999999998873 579999988766655544443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.6e-17 Score=150.92 Aligned_cols=141 Identities=15% Similarity=0.244 Sum_probs=127.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhHHhhhhh-chhHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHhhhhhhhhhhH
Q 043735 77 YNSETLTLFTSSLYLAALLSSLVASSVTRKF-GRKKSMLFGGVLFFAGALINGFAQ-GVWMLIVGRLLLGFGIGFANQSV 154 (336)
Q Consensus 77 ~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~r~l~g~~~~~~~~~~ 154 (336)
++..+.+++.+++.++..++++++|+++||+ |||+++..+.++.+++.+++.+++ +++.+++.|++.|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 8999999999999999999999999999999 999999999999999999999998 99999999999999999999999
Q ss_pred HHHhhhcCCCccchhHHHH---HHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhc
Q 043735 155 PLYLSEMAPYKYRGALNIG---FQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSL 220 (336)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (336)
..++.|++|+++|+++.+. ++.+.++|..++|.+++.+.+. .+|++.|++.++..++..+..+
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN---FGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT---SCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876666 8899999999999999988763 5799999887777665554443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-16 Score=144.64 Aligned_cols=146 Identities=12% Similarity=0.075 Sum_probs=100.9
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHH---HHHHhhhhH-HHHHHHHHHHhhhhhhh
Q 043735 75 CQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGA---LINGFAQGV-WMLIVGRLLLGFGIGFA 150 (336)
Q Consensus 75 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~---~~~~~~~~~-~~~~~~r~l~g~~~~~~ 150 (336)
+|+|..+.+++.+...++..++++++|+++||+|||+++.++.++.++.. ....+.+.. ..+...+.+.+++.+..
T Consensus 38 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 117 (417)
T 2cfq_A 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFC 117 (417)
T ss_dssp TCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999999999999999999999998887765532 111222221 12344566666655554
Q ss_pred hhhHHHHhhhcCCC--ccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCC
Q 043735 151 NQSVPLYLSEMAPY--KYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPD 224 (336)
Q Consensus 151 ~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e 224 (336)
++.....+.++.++ ++|+...+.......+|..++|.+++.+.+ .+|++.|++.++..++..+..++.+|
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~----~~~~~~f~~~~~~~~~~~~~~~~~~~ 189 (417)
T 2cfq_A 118 FNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----INNQFVFWLGSGCALILAVLLFFAKT 189 (417)
T ss_dssp HHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH----HCSHHHHTTTTTTTTTHHHHSCSSCC
T ss_pred HhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHHHHHHHHHHHcCc
Confidence 44444444444433 345666777777778899999999988875 36899998776665544444444443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=7.1e-13 Score=120.51 Aligned_cols=145 Identities=14% Similarity=0.102 Sum_probs=123.2
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhh--chhHHHHHHHHHHH-HHHHHHHhh--hhHHHHHHHHHHHhhhhhh
Q 043735 75 CQYNSETLTLFTSSLYLAALLSSLVASSVTRKF--GRKKSMLFGGVLFF-AGALINGFA--QGVWMLIVGRLLLGFGIGF 149 (336)
Q Consensus 75 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--Grr~~l~~~~~~~~-i~~~~~~~~--~~~~~~~~~r~l~g~~~~~ 149 (336)
+|++..+.+++.+...++..++.++.|++.||+ |||+.+..+.++.. ++.++..+. .+.+.+.+..++.|++.+.
T Consensus 283 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 362 (451)
T 1pw4_A 283 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG 362 (451)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhc
Confidence 488999999999999999999999999999999 99999888877776 666666555 3677777888899998888
Q ss_pred hhhhHHHHhhhcCCCccchhHHHHHHHHHHH-HHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhccc
Q 043735 150 ANQSVPLYLSEMAPYKYRGALNIGFQLSITI-GILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVL 222 (336)
Q Consensus 150 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 222 (336)
..+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+.+. .||+..+++.++..++..+..++.
T Consensus 363 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 363 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF---FGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---SCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999999 999999999999884 468888887777766665555443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.6e-13 Score=120.96 Aligned_cols=146 Identities=15% Similarity=0.177 Sum_probs=119.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHHHH
Q 043735 78 NSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLY 157 (336)
Q Consensus 78 s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~~~ 157 (336)
+....+++.++..++..++.++.|+++||+|||+++..+.++.+++.+..++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566788888888999999999999999999999998888888887777777777777777788888777777777889
Q ss_pred hhhcCCCccchhHHHH-HHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhh-cccCCCh
Q 043735 158 LSEMAPYKYRGALNIG-FQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGS-LVLPDTP 226 (336)
Q Consensus 158 ~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~ 226 (336)
+.|.+|++.|+.+.+. ++....+|+.++|.+.+.+.+. .|+...|.+.++..++..+.. ++.||++
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~---~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES---IGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH---SHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999888 5888889999999999988763 468888887777666655544 4456654
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=4.2e-12 Score=115.04 Aligned_cols=137 Identities=13% Similarity=0.021 Sum_probs=112.4
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVP 155 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~ 155 (336)
|.+..+.+++.+...++..++.++.|+++||+|||+++..+.++..++.++..+.++.+.++. -++.|++.+..++...
T Consensus 291 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~ 369 (438)
T 3o7q_A 291 GMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA-LTLCSAFMSIQYPTIF 369 (438)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHTTHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999888888777665544 4888899998999999
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHH
Q 043735 156 LYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITI 217 (336)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 217 (336)
.+..|.+|++ |+.+.++.. ...+|..++|.+.+.+.+..+ +++..+++.++..++..+
T Consensus 370 ~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 370 SLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG--NIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT--SSGGGGHHHHHHHHHHHH
T ss_pred HHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHH
Confidence 9999999876 888887766 566999999999999987432 166666655444443333
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=7.8e-12 Score=115.06 Aligned_cols=152 Identities=16% Similarity=0.043 Sum_probs=105.6
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHhhh-hhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQ----GVWMLIVGRLLLGFG-IGFA 150 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~----~~~~~~~~r~l~g~~-~~~~ 150 (336)
+.+............+...++.++.+++.||+|||+.++.+.....++.+..+... +.+..++..++...+ ....
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (491)
T 4gc0_A 308 GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSW 387 (491)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHH
Confidence 55556666777788888999999999999999999999999888888776654321 112222222222222 2223
Q ss_pred hhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhccc---CCchhHHHHhhhHHHHHHHHHh-hcccCCCh
Q 043735 151 NQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIK---GGWGWRLSLGGAMVPALIITIG-SLVLPDTP 226 (336)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~---~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~ 226 (336)
.+..+.+.+|.+|.+.|+++.++......+++.+++.+.+.+.+.. ...++.+.|++.++++++..+. ++++||++
T Consensus 388 ~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 388 GPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp THHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 4667789999999999999999999999999999887776654311 0123445566666666555554 46899986
Q ss_pred H
Q 043735 227 N 227 (336)
Q Consensus 227 ~ 227 (336)
.
T Consensus 468 g 468 (491)
T 4gc0_A 468 G 468 (491)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.34 E-value=1e-11 Score=114.26 Aligned_cols=141 Identities=11% Similarity=0.042 Sum_probs=109.9
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHH-----HHHHHHHHHHHHHHhhh---------hHHHHHHHHH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSML-----FGGVLFFAGALINGFAQ---------GVWMLIVGRL 141 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~-----~~~~~~~i~~~~~~~~~---------~~~~~~~~r~ 141 (336)
+.+..+.+++.+...++..++.++.|++.||+|||+... .+.++.+++.++..... +.+.+.+..+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (491)
T 4aps_A 315 DSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWA 394 (491)
T ss_dssp CCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHH
T ss_pred ccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Confidence 445466778888889999999999999999999987654 66777777766555532 6677778889
Q ss_pred HHhhhhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhc
Q 043735 142 LLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSL 220 (336)
Q Consensus 142 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (336)
+.|++.+...+....++.|.+|+++|+.+.++.+....+|..+++.+.+.+.+. ++.+.+...+...++..+..+
T Consensus 395 l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 469 (491)
T 4aps_A 395 LVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK----SEVAYFSYFGLGSVVLGIVLV 469 (491)
T ss_dssp HHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS----STTHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHHHHH
Confidence 999999998999999999999999999999999999999999999998887753 455566665655555444443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.99 E-value=2e-10 Score=101.87 Aligned_cols=126 Identities=21% Similarity=0.177 Sum_probs=98.1
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHH-HHHHHH--HHHh--hhhHHHHHHHHHHHhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVL-FFAGAL--INGF--AQGVWMLIVGRLLLGFGIGFA 150 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~-~~i~~~--~~~~--~~~~~~~~~~r~l~g~~~~~~ 150 (336)
|.+..+.+++.+...++..++.++.+++.||+|||. ..+..+ ...+.. .... .++.+.+.+..++.|++.+..
T Consensus 231 g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 308 (375)
T 2gfp_A 231 GLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGML 308 (375)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHh
Confidence 778889999999999999999999999999999833 223322 222221 1222 236677778888999999999
Q ss_pred hhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhh
Q 043735 151 NQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGG 207 (336)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~ 207 (336)
.+....++.|..| ++|+++.++.+....+|..++|.+.+.+.+. .++...+..
T Consensus 309 ~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~---~~~~~~~~~ 361 (375)
T 2gfp_A 309 FPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQT---GQGSLGLLM 361 (375)
T ss_dssp SSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH---HHHHHHHHH
T ss_pred hHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcC---CcccHHHHH
Confidence 9999999999998 8899999999999999999999988887652 356655554
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.79 E-value=2e-08 Score=93.00 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=88.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhh----hhhch----hHHHHHHHHHHHHHHHHHHhh---------hhHHHHHHHHHHH
Q 043735 81 TLTLFTSSLYLAALLSSLVASSVT----RKFGR----KKSMLFGGVLFFAGALINGFA---------QGVWMLIVGRLLL 143 (336)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~g~l~----dr~Gr----r~~l~~~~~~~~i~~~~~~~~---------~~~~~~~~~r~l~ 143 (336)
..+++.....++..++.++.+++. ||.|+ ++.+..+.++.+++.++..+. .+.+.+++..++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 456666666677777777777664 55543 345667777777777666653 2566777888999
Q ss_pred hhhhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043735 144 GFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAK 194 (336)
Q Consensus 144 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~ 194 (336)
|++.+...+....++.|..|+++||+++++++....+|..++|.+.+.+.+
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999998876
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 336 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 7e-07 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 3e-05 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 0.002 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 48.1 bits (113), Expect = 7e-07
Identities = 31/234 (13%), Positives = 68/234 (29%), Gaps = 21/234 (8%)
Query: 78 NSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALI----NGFAQGV 133
+ L S + +A S + SV+ + + + G +L A L +
Sbjct: 57 SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSI 116
Query: 134 WMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFA 193
++ V L G+ G + K RG + + + +G I +L
Sbjct: 117 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG- 175
Query: 194 KIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEAREKLRKIRGVNDVDE 253
+ W +L A+++ + + + +E +
Sbjct: 176 -MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPD--------- 225
Query: 254 EFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAP 307
+E ++Q ++ L I I I+ ++P
Sbjct: 226 ------DYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSP 273
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 43.2 bits (100), Expect = 3e-05
Identities = 18/174 (10%), Positives = 43/174 (24%), Gaps = 3/174 (1%)
Query: 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWM 135
+ + +++ L +LL + ++ K G +K +L+ +
Sbjct: 39 HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPL 98
Query: 136 LIVGRLLLGFGIGFANQSVPLYLSEMAP---YKYRGALNIGFQLSITIGILIANVLNYFF 192
L L+ G + K N F + G + +
Sbjct: 99 LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIV 158
Query: 193 AKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQRDEAREKLRKIR 246
+ + G+ ++ + D P+S
Sbjct: 159 GIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKL 212
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 37.1 bits (84), Expect = 0.002
Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 3/127 (2%)
Query: 113 MLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRG-ALN 171
+L G + + + FA +++ + L F + F Y++ ++
Sbjct: 292 LLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYL 351
Query: 172 IGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIE 231
+ F + ++ +VL + G G L LG + +I++ L +
Sbjct: 352 VCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISV--FTLSGPGPLSLL 409
Query: 232 RGQRDEA 238
R Q +E
Sbjct: 410 RRQVNEV 416
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 336 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.94 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.6 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.49 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.35 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=7.2e-27 Score=210.61 Aligned_cols=243 Identities=16% Similarity=0.097 Sum_probs=173.5
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHhhhhhhh
Q 043735 75 CQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQ----GVWMLIVGRLLLGFGIGFA 150 (336)
Q Consensus 75 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~----~~~~~~~~r~l~g~~~~~~ 150 (336)
+|+|.++.+++.+++.+++.++++++|+++||+|||+++..+.++.+++.+++++.+ +++.+++.|++.|++.+..
T Consensus 54 ~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 133 (447)
T d1pw4a_ 54 QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMG 133 (447)
T ss_dssp STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHT
T ss_pred hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhh
Confidence 499999999999999999999999999999999999999999999999998887654 6788999999999999999
Q ss_pred hhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhh-cccCCChHHH
Q 043735 151 NQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGS-LVLPDTPNSM 229 (336)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~ 229 (336)
.+....++.|++|+++|++++++.+.+..+|..+++.+.+.+....+ +||+.+++.+.+.++..+.. ++.+|+|+..
T Consensus 134 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (447)
T d1pw4a_ 134 WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN--DWHAALYMPAFCAILVALFAFAMMRDTPQSC 211 (447)
T ss_dssp HHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC--CSTTCTHHHHHHHHHHHHHHHHHCCCSSTTT
T ss_pred hhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhh--cccccchhhhhhHHHHHHHHHHhcccchhhc
Confidence 99999999999999999999999999999999999988887766432 68888887777665555444 4566665321
Q ss_pred HhcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHH
Q 043735 230 IERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVL 309 (336)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (336)
.....++. +.+.+.+..++.+++... .+...+....++..+......++.....+....+.|.+
T Consensus 212 ~~~~~~~~------------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (447)
T d1pw4a_ 212 GLPPIEEY------------KNDYPDDYNEKAEQELTA----KQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTY 275 (447)
T ss_dssp CCCSCTTT------------CCC-------------CC----THHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhh------------hhhcccchhhccccccch----hhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhh
Confidence 11110000 000000000000111111 11112222333344455555555555667777888888
Q ss_pred HH-hcCCCCcHHHHHHHHHhHhhheec
Q 043735 310 FN-TIGFGNDASLMSAVITGLVNACAT 335 (336)
Q Consensus 310 ~~-~~G~s~~~~~~~~~~~~~~~~~~~ 335 (336)
+. ..|++..+++....+..+..+++.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (447)
T d1pw4a_ 276 LKEVKHFALDKSSWAYFLYEYAGIPGT 302 (447)
T ss_dssp BTTBSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhhhhhcchhhhhhhh
Confidence 75 479999999888888877766553
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=9.2e-16 Score=134.77 Aligned_cols=147 Identities=11% Similarity=0.025 Sum_probs=103.1
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHH----HHHHHHHHhhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWM----LIVGRLLLGFGIGFAN 151 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~----~~~~r~l~g~~~~~~~ 151 (336)
|+|.+++|++.++..++..++++++|+++||+|||++++++..+..++..+.....+... ..+.+.+.+.+.+...
T Consensus 39 g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (417)
T d1pv7a_ 39 HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCF 118 (417)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccc
Confidence 899999999999999999999999999999999999999999999888887777655433 3444555555555444
Q ss_pred hhHHHHhhhcCCC--ccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHH-HHHHHHhhcccCCCh
Q 043735 152 QSVPLYLSEMAPY--KYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVP-ALIITIGSLVLPDTP 226 (336)
Q Consensus 152 ~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~e~~ 226 (336)
........+..++ +++....+........+..+++.+++.+.+. +|+..+...... .+...+..+..+|++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (417)
T d1pv7a_ 119 NAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI----NNQFVFWLGSGCALILAVLLFFAKTDAP 192 (417)
T ss_dssp TTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH----CHHHHHHHHHHHHHHHHHHHHSSCCCSC
T ss_pred cchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc----cccccccchhhHHHHHHHHHHHHhcccc
Confidence 4444444333332 2334566677777788888888888888763 455555444444 444444455666655
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=1.6e-13 Score=120.17 Aligned_cols=146 Identities=14% Similarity=0.163 Sum_probs=126.4
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVP 155 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~ 155 (336)
+.+....+...+...++..++..+.+++.||+|||+++..+.++.+++.+...+.++.+.+++..++.|++.+...+...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 334 (417)
T d1pv7a_ 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCF 334 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 44566778888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCccchhHHHHH-HHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhh-cccCC
Q 043735 156 LYLSEMAPYKYRGALNIGF-QLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGS-LVLPD 224 (336)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e 224 (336)
.++.|.+|++.|++..++. +....+|..++|.+.+.+.+. .|++..+++.+++.++..++. +.+++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES---IGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999975 567789999999999999884 568888887777766555544 44443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=3.1e-12 Score=113.72 Aligned_cols=144 Identities=15% Similarity=0.085 Sum_probs=109.2
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHH---HHHh--hhhHHHHHHHHHHHhhhhh
Q 043735 74 YCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGAL---INGF--AQGVWMLIVGRLLLGFGIG 148 (336)
Q Consensus 74 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~---~~~~--~~~~~~~~~~r~l~g~~~~ 148 (336)
..+.+..+.++..+...++..++.++.|++.||++||+..........+... .... ..+.+...+..++.|++.+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 358 (447)
T d1pw4a_ 279 VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIY 358 (447)
T ss_dssp BSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHT
T ss_pred ccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 3478899999999999999999999999999999987654443333332222 2221 3466777777888898888
Q ss_pred hhhhhHHHHhhhcCCCccchhHHHHHHHHHHH-HHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhc
Q 043735 149 FANQSVPLYLSEMAPYKYRGALNIGFQLSITI-GILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSL 220 (336)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (336)
...+....+..|.+|++.|+++.++.+....+ |.+++|.+.+.+.+. .||+..+++.....++..++..
T Consensus 359 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~---~g~~~~~~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 359 GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF---FGWDGGFMVMIGGSILAVILLI 428 (447)
T ss_dssp HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---SCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hChHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999998887776 556788888888874 5688888766665555544443
|