Citrus Sinensis ID: 043745

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170----
Protein Sequence
MGQPRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCCSSS
Secondary Structure (PSIPRED)
ccccccccEEEEEEccEEEEEEEEcccccHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccHHHHHHHHHHHccEEEEccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEEccccHHHccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHcHHHHHHcccccccccccccccccEEEccccccccccccccccc
Coil and Loop (DISEMBL)
mgqprlgklcdfqvegRTIKAQIWDTAGQERYRAITSAYYRGALGALLVydvtkpttfENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISkkslssgepapsnikegqtivvggaseantkkpccsss
Flexible Loop (DISEMBL)
MGQPRLGKLCDFQVEGRTIkaqiwdtagQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKslssgepapsniKEGQTIvvggaseantkkpccsss
Low Complexity Region (SEG)
MGQPRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCCSSS
Disordered region (IsUnstruct)
******GKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIIS**************************************
Disordered Region (DISOPRED)
*GQPRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY***********************************KPCCS**
Disordered Region (DISEMBL)
MGQPRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK**********NIKEGQTIVVGGASE***********
Disordered Region (DISPRO)
***PRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKS***********************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGQPRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCCSSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	174	2.2.26 [Sep-21-2011]
O04486	217	Ras-related protein RABA2	yes	no	0.936	0.751	0.884	5e-81
Q39434	214	Ras-related protein Rab2B	N/A	no	0.925	0.752	0.722	2e-65
Q9LNW1	214	Ras-related protein RABA2	no	no	0.925	0.752	0.716	4e-63
Q39572	216	Ras-related protein YPTC6	N/A	no	0.913	0.736	0.723	6e-62
Q40193	216	Ras-related protein Rab11	N/A	no	0.931	0.75	0.680	2e-61
Q96283	217	Ras-related protein RABA2	no	no	0.919	0.737	0.731	1e-59
Q9S810	218	Ras-related protein RABA1	no	no	0.925	0.738	0.631	8e-59
Q9FJH0	217	Ras-related protein RABA1	no	no	0.919	0.737	0.638	2e-58
Q9FIF9	217	Ras-related protein RABA2	no	no	0.925	0.741	0.709	2e-58
Q5ZJN2	216	Ras-related protein Rab-1	yes	no	0.919	0.740	0.654	4e-58

>sp|O04486|RAA2A_ARATH Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1

 Score =  299 bits (766), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 145/164 (88%), Positives = 154/164 (93%), Gaps = 1/164 (0%)

Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
            QVEGRT+KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH
Sbjct: 54  LQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 113

Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           ADSNIVIM+IGNKTDLKHLRAVATEDAQSYAE+EGLSFIETSALEA+NVEKAFQTILSE+
Sbjct: 114 ADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEV 173

Query: 132 YRIISKKSLSSGE-PAPSNIKEGQTIVVGGASEANTKKPCCSSS 174
           YRIISKKS+SS +  A +NIKEGQTI V   SE+N KKPCCSSS
Sbjct: 174 YRIISKKSISSDQTTANANIKEGQTIDVAATSESNAKKPCCSSS 217

Intracellular vesicle trafficking and protein transport.
Arabidopsis thaliana (taxid: 3702)

>sp|Q39434|RB2BV_BETVU Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1

 Score =  247 bits (631), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 117/162 (72%), Positives = 140/162 (86%), Gaps = 1/162 (0%)

Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
            QVEG+T+KAQIWDTAGQERYRAITSAYYRGA+GALLVYD+TK  TF+NV RWL+ELRDH
Sbjct: 54  LQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDH 113

Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           ADSNIVIMM GNK+DLKHLRAV+ ED Q+ AE+EGLSF+ETSALEA+N+EKAFQTIL+EI
Sbjct: 114 ADSNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEI 173

Query: 132 YRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCCSS 173
           Y IISKK+L++ E + +   +G TI V  AS AN ++ CCS+
Sbjct: 174 YHIISKKALAAQEASSNLPGQGTTINVADAS-ANQRRSCCST 214

Beta vulgaris (taxid: 161934)

>sp|Q9LNW1|RAA2B_ARATH Ras-related protein RABA2b OS=Arabidopsis thaliana GN=RABA2B PE=2 SV=2

 Score =  240 bits (612), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 116/162 (71%), Positives = 136/162 (83%), Gaps = 1/162 (0%)

Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
            QVEG+T+KAQIWDTAGQERYRAITSAYYRGA+GALLVYD+TK  TFENV RWL+ELRDH
Sbjct: 54  LQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFENVLRWLRELRDH 113

Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           ADSNIVIMM GNK+DL HLR+VA ED +S AE+EGLSF+ETSALEA N+EKAFQTILSEI
Sbjct: 114 ADSNIVIMMAGNKSDLNHLRSVADEDGRSLAEKEGLSFLETSALEATNIEKAFQTILSEI 173

Query: 132 YRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCCSS 173
           Y IISKK+L++ E A +   +G  I +  +S  N +K CCS+
Sbjct: 174 YHIISKKALAAQEAAGNLPGQGTAINISDSSATN-RKGCCST 214

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39572|YPTC6_CHLRE Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1

 Score =  236 bits (602), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 118/163 (72%), Positives = 134/163 (82%), Gaps = 4/163 (2%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           QV+G+TIKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+TK  TFENV RWLKELRDHA
Sbjct: 55  QVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHA 114

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
           DSNIVIM++GNK+DLKHLR V TE AQ++ EREGLSFIETSALE+ NVEKAFQ IL+EIY
Sbjct: 115 DSNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQILTEIY 174

Query: 133 RIISKKSLSSGEPAPSNIKEGQ-TIVVGGASEANTKKP--CCS 172
            I+SKK L S +  P  I EG+  IV+  A +   KK   CCS
Sbjct: 175 HIVSKKVLDSEDNRP-KIGEGRDVIVIDNAHDDGGKKKGGCCS 216

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q40193|RB11C_LOTJA Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1

 Score =  234 bits (598), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 111/163 (68%), Positives = 133/163 (81%), Gaps = 1/163 (0%)

Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
            QVEG+T+KAQIWDTAGQERYRAITSAYYRGA+GALLVYD+TK  TF+NV RWL+ELRDH
Sbjct: 54  LQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDH 113

Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           ADSNIVIMM GNK+DL HLRAV+ +D  + +E+EGLSF+ETSALEA N+EKAFQTIL+EI
Sbjct: 114 ADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEI 173

Query: 132 YRIISKKSLSSGEPAPSNIKEGQTIVVGGA-SEANTKKPCCSS 173
           Y I+SKK+L++ E        GQ   +  A +  NTKK CCS+
Sbjct: 174 YHIVSKKALAAQEATAGASVPGQGTTINVADTSGNTKKGCCST 216

Lotus japonicus (taxid: 34305)

>sp|Q96283|RAA2C_ARATH Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4

 Score =  229 bits (583), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 120/164 (73%), Positives = 135/164 (82%), Gaps = 4/164 (2%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           QVEG+TIKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+TK  TF+NV RWL+ELRDHA
Sbjct: 55  QVEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA 114

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
           DSNIVIMM GNK+DL HLR+VA ED QS AE+EGLSF+ETSALEA NVEKAFQTIL EIY
Sbjct: 115 DSNIVIMMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIY 174

Query: 133 RIISKKSLSSGEPAPSNIK---EGQTIVVGGASEANTKKPCCSS 173
            IISKK+L++ E A +N     +G TI V   S    K+ CCSS
Sbjct: 175 HIISKKALAAQEAAAANSAIPGQGTTINVDDTS-GGAKRACCSS 217

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S810|RAA1I_ARATH Ras-related protein RABA1i OS=Arabidopsis thaliana GN=RABA1I PE=2 SV=1

 Score =  226 bits (575), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 103/163 (63%), Positives = 135/163 (82%), Gaps = 2/163 (1%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           Q + + +KAQIWDTAGQERYRAITSAYYRGA+GALLVYDVT+  TFENV RWLKELRDH 
Sbjct: 56  QCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHT 115

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
           D+NIVIM++GNK DL+HLRA++TE+A+++AERE   F+ETSALEA+NV+ AF  +L++IY
Sbjct: 116 DANIVIMLVGNKADLRHLRAISTEEAKAFAERENTFFMETSALEAVNVDNAFTEVLTQIY 175

Query: 133 RIISKKSLSSGEPAPSNIKEGQTIVVGGASE-ANTKKP-CCSS 173
           R++SKK+L +G+   + + +GQ I VGG  + +  KKP CCS+
Sbjct: 176 RVVSKKALEAGDDPTTALPKGQMINVGGRDDISAVKKPGCCSA 218

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJH0|RAA1F_ARATH Ras-related protein RABA1f OS=Arabidopsis thaliana GN=RABA1F PE=2 SV=1

 Score =  224 bits (572), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 104/163 (63%), Positives = 132/163 (80%), Gaps = 3/163 (1%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
            V+ + +KAQIWDTAGQERYRAITSAYYRGA+GALLVYDVT+  TFENV RWLKELRDH 
Sbjct: 56  HVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHT 115

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
           D+NIVIM +GNK DL+HLRAV+TEDA+++AERE   F+ETSALE++NVE AF  +LS+IY
Sbjct: 116 DANIVIMFVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLSQIY 175

Query: 133 RIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKP--CCSS 173
           R++S+K+L  G+  P+ + +GQTI VG   + +  K   CCS+
Sbjct: 176 RVVSRKALDIGDD-PAALPKGQTINVGSKDDVSAVKKVGCCSN 217

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIF9|RAA2D_ARATH Ras-related protein RABA2d OS=Arabidopsis thaliana GN=RABA2D PE=2 SV=1

 Score =  224 bits (571), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 117/165 (70%), Positives = 135/165 (81%), Gaps = 4/165 (2%)

Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
            QVEG+T+KAQIWDTAGQERYRAITSAYYRGA+GALLVYD+TK  TF+NV RWL+ELRDH
Sbjct: 54  LQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 113

Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           ADSNIVIMM GNK DL HLR+VA ED Q+ AE EGLSF+ETSALEA NVEKAFQT+L+EI
Sbjct: 114 ADSNIVIMMAGNKADLNHLRSVAEEDGQTLAETEGLSFLETSALEATNVEKAFQTVLAEI 173

Query: 132 YRIISKKSLSSGEPAPSNIK---EGQTIVVGGASEANTKKPCCSS 173
           Y IISKK+L++ E A +N     +G TI V   S A  K+ CCS+
Sbjct: 174 YHIISKKALAAQEAAAANSAIPGQGTTINVEDTSGAG-KRGCCST 217

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5ZJN2|RB11A_CHICK Ras-related protein Rab-11A OS=Gallus gallus GN=RAB11A PE=2 SV=1

 Score =  223 bits (569), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 108/165 (65%), Positives = 133/165 (80%), Gaps = 5/165 (3%)

Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
            QV+G+TIKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+ K  T+ENV RWLKELRDH
Sbjct: 53  IQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH 112

Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           ADSNIVIM++GNK+DL+HLRAV T++A+++AE+ GLSFIETSAL++ NVE AFQTIL+EI
Sbjct: 113 ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172

Query: 132 YRIISKKSLSS---GEPAPSNIKEGQTIVVGGASEANTKKPCCSS 173
           YRI+S+K +S     + +PSN      I V   +E   K  CC +
Sbjct: 173 YRIVSQKQMSDRRENDMSPSN--NVVPIHVPPTTENKPKMQCCQN 215

Modulates endosomal trafficking. Acts as a major regulator of membrane delivery during cytokinesis.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
255570960	215	protein with unknown function [Ricinus c	0.931	0.753	0.926	9e-83
226491888	217	ras-related protein Rab11C [Zea mays] gi	0.936	0.751	0.884	2e-79
15217568	217	Ras-related protein RABA2a [Arabidopsis	0.936	0.751	0.884	2e-79
449431866	216	PREDICTED: ras-related protein RABA2a-li	0.931	0.75	0.902	8e-79
297849266	217	hypothetical protein ARALYDRAFT_888208 [	0.936	0.751	0.878	3e-78
358249314	217	uncharacterized protein LOC100797258 [Gl	0.936	0.751	0.871	6e-78
225465200	215	PREDICTED: ras-related protein RABA2a [V	0.925	0.748	0.876	7e-78
449478127	220	PREDICTED: ras-related protein RABA2a-li	0.913	0.722	0.900	2e-77
357445241	220	Ras-related protein RABA2a [Medicago tru	0.931	0.736	0.847	3e-76
351728017	216	uncharacterized protein LOC100499980 [Gl	0.936	0.754	0.846	1e-75

>gi|255570960|ref|XP_002526431.1| protein with unknown function [Ricinus communis] gi|223534211|gb|EEF35926.1| protein with unknown function [Ricinus communis]

 Score =  311 bits (796), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 151/163 (92%), Positives = 157/163 (96%), Gaps = 1/163 (0%)

Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
            QVEGRT+KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH
Sbjct: 54  LQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 113

Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           AD+NIVIM+IGNKTDLKHLRAVATEDAQ YAEREGLSFIETSALEA NVEKAFQTILSEI
Sbjct: 114 ADANIVIMLIGNKTDLKHLRAVATEDAQGYAEREGLSFIETSALEATNVEKAFQTILSEI 173

Query: 132 YRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCCSSS 174
           YRIISKKSL+S EPAP+NIKEG+ IVVGG SEANTKKPCCSSS
Sbjct: 174 YRIISKKSLTSEEPAPANIKEGKMIVVGG-SEANTKKPCCSSS 215

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226491888|ref|NP_001147252.1| ras-related protein Rab11C [Zea mays] gi|195609118|gb|ACG26389.1| ras-related protein Rab11C [Zea mays]

 Score =  300 bits (767), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 145/164 (88%), Positives = 155/164 (94%), Gaps = 1/164 (0%)

Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
            QVEGRT+KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH
Sbjct: 54  LQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 113

Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           AD NIVIM+IGNKTDLKHLRAVATEDAQSYAE+EGLSFIETSALEA+NVEKAFQTILSEI
Sbjct: 114 ADYNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEI 173

Query: 132 YRIISKKSLSSGEP-APSNIKEGQTIVVGGASEANTKKPCCSSS 174
           YRIISKKS+SS +  A +N+KEGQTI V  +SE+NTKKPCCSSS
Sbjct: 174 YRIISKKSISSDQASANANVKEGQTIDVAASSESNTKKPCCSSS 217

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15217568|ref|NP_172434.1| Ras-related protein RABA2a [Arabidopsis thaliana] gi|3024516|sp|O04486.1|RAA2A_ARATH RecName: Full=Ras-related protein RABA2a; Short=AtRABA2a; AltName: Full=Ras-related protein Rab11C; Short=AtRab11C; Flags: Precursor gi|2160157|gb|AAB60720.1| Strong similarity to A. thaliana ara-2 (gb|ATHARA2). ESTs gb|ATTS2483,gb|ATTS2484,gb|AA042159 come from this gene [Arabidopsis thaliana] gi|2231303|gb|AAB61994.1| ras-related small GTPase [Arabidopsis thaliana] gi|15010638|gb|AAK73978.1| At1g09630/F21M12_2 [Arabidopsis thaliana] gi|21553810|gb|AAM62903.1| putative RAS-related protein RAB11C [Arabidopsis thaliana] gi|22137284|gb|AAM91487.1| At1g09630/F21M12_2 [Arabidopsis thaliana] gi|332190350|gb|AEE28471.1| Ras-related protein RABA2a [Arabidopsis thaliana]

 Score =  299 bits (766), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 145/164 (88%), Positives = 154/164 (93%), Gaps = 1/164 (0%)

Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
            QVEGRT+KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH
Sbjct: 54  LQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 113

Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           ADSNIVIM+IGNKTDLKHLRAVATEDAQSYAE+EGLSFIETSALEA+NVEKAFQTILSE+
Sbjct: 114 ADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEV 173

Query: 132 YRIISKKSLSSGE-PAPSNIKEGQTIVVGGASEANTKKPCCSSS 174
           YRIISKKS+SS +  A +NIKEGQTI V   SE+N KKPCCSSS
Sbjct: 174 YRIISKKSISSDQTTANANIKEGQTIDVAATSESNAKKPCCSSS 217

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449431866|ref|XP_004133721.1| PREDICTED: ras-related protein RABA2a-like [Cucumis sativus]

 Score =  297 bits (761), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 148/164 (90%), Positives = 155/164 (94%), Gaps = 2/164 (1%)

Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
            QVEGRT+KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP TF+NVSRWLKELRDH
Sbjct: 54  LQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDH 113

Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           ADSNIVIM+IGNKTDLKHLRAVATEDAQSYAE+EGLSFIETSALEA NVEKAFQTILSEI
Sbjct: 114 ADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEATNVEKAFQTILSEI 173

Query: 132 YRIISKKSLSSGEPAPS-NIKEGQTIVVGGASEANTKKPCCSSS 174
           YRIISKKSL+S EPA + NIKEG+TIVV G SEANTKK CCSSS
Sbjct: 174 YRIISKKSLNSEEPAAANNIKEGKTIVV-GESEANTKKACCSSS 216

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849266|ref|XP_002892514.1| hypothetical protein ARALYDRAFT_888208 [Arabidopsis lyrata subsp. lyrata] gi|297338356|gb|EFH68773.1| hypothetical protein ARALYDRAFT_888208 [Arabidopsis lyrata subsp. lyrata]

 Score =  295 bits (756), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 144/164 (87%), Positives = 153/164 (93%), Gaps = 1/164 (0%)

Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
            QVEGRT+KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH
Sbjct: 54  LQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 113

Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           ADSNIVIM+IGNKTDLKHLRAVATEDAQSYAE+EGLSFIETSALEA+NVEKAFQTILSEI
Sbjct: 114 ADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEI 173

Query: 132 YRIISKKSLSSGE-PAPSNIKEGQTIVVGGASEANTKKPCCSSS 174
           YRIISKKS+SS +  A ++IKEGQTI V   SE+  KKPCCSSS
Sbjct: 174 YRIISKKSISSDQTTANASIKEGQTIDVAATSESTAKKPCCSSS 217

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249314|ref|NP_001240030.1| uncharacterized protein LOC100797258 [Glycine max] gi|255645100|gb|ACU23049.1| unknown [Glycine max]

 Score =  295 bits (754), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 143/164 (87%), Positives = 152/164 (92%), Gaps = 1/164 (0%)

Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
            QVEGRT+KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH
Sbjct: 54  LQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 113

Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           AD+NIVIM+IGNKTDLKHLRAVATEDAQ YAE+EGLSFIETSALEA NVE AFQTIL+EI
Sbjct: 114 ADANIVIMLIGNKTDLKHLRAVATEDAQGYAEKEGLSFIETSALEATNVENAFQTILAEI 173

Query: 132 YRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKP-CCSSS 174
           YRIISKKSLSS +PA + IKEG+TI VGGA E NT KP CC+SS
Sbjct: 174 YRIISKKSLSSNDPAANIIKEGKTITVGGAPEPNTNKPSCCTSS 217

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465200|ref|XP_002264444.1| PREDICTED: ras-related protein RABA2a [Vitis vinifera] gi|297739506|emb|CBI29688.3| unnamed protein product [Vitis vinifera]

 Score =  295 bits (754), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 142/162 (87%), Positives = 152/162 (93%), Gaps = 1/162 (0%)

Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
            QVEGRT+KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH
Sbjct: 54  LQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 113

Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           ADSNIVIM+IGNKTDLKHLRAVATEDAQ +AE+EGLSFIETSALEA NVEKAFQTIL EI
Sbjct: 114 ADSNIVIMLIGNKTDLKHLRAVATEDAQGFAEKEGLSFIETSALEATNVEKAFQTILGEI 173

Query: 132 YRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCCSS 173
           YRIISKK+LSS +PAP+ IKEG+T+VV G S+ NTKK CCSS
Sbjct: 174 YRIISKKTLSSDDPAPAGIKEGKTLVVDG-SDTNTKKTCCSS 214

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449478127|ref|XP_004155229.1| PREDICTED: ras-related protein RABA2a-like [Cucumis sativus]

 Score =  293 bits (750), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 145/161 (90%), Positives = 152/161 (94%), Gaps = 2/161 (1%)

Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
            QVEGRT+KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP TF+NVSRWLKELRDH
Sbjct: 54  LQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDH 113

Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           ADSNIVIM+IGNKTDLKHLRAVATEDAQSYAE+EGLSFIETSALEA NVEKAFQTILSEI
Sbjct: 114 ADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEATNVEKAFQTILSEI 173

Query: 132 YRIISKKSLSSGEPAPS-NIKEGQTIVVGGASEANTKKPCC 171
           YRIISKKSL+S EPA + NIKEG+TIVV G SEANTKK CC
Sbjct: 174 YRIISKKSLNSEEPAAANNIKEGKTIVV-GESEANTKKACC 213

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445241|ref|XP_003592898.1| Ras-related protein RABA2a [Medicago truncatula] gi|92893896|gb|ABE91946.1| Ras GTPase; Sigma-54 factor, interaction region [Medicago truncatula] gi|355481946|gb|AES63149.1| Ras-related protein RABA2a [Medicago truncatula]

 Score =  289 bits (739), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 139/164 (84%), Positives = 151/164 (92%), Gaps = 2/164 (1%)

Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
            QVEGRT+KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTF+NV+RWLKELRDH
Sbjct: 57  LQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFDNVTRWLKELRDH 116

Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           AD+NIVIM+IGNKTDLKHLRAVATEDAQSYAE+EGLSFIETSALEA NVEKAFQT L EI
Sbjct: 117 ADANIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEATNVEKAFQTTLGEI 176

Query: 132 YRIISKKSLSSG-EP-APSNIKEGQTIVVGGASEANTKKPCCSS 173
           YRIISKKSLS+  EP A +NIKEG+TI +GG+   NT KPCC+S
Sbjct: 177 YRIISKKSLSTANEPAAAANIKEGKTIAIGGSETTNTNKPCCTS 220

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351728017|ref|NP_001235133.1| uncharacterized protein LOC100499980 [Glycine max] gi|255628259|gb|ACU14474.1| unknown [Glycine max]

 Score =  287 bits (734), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 138/163 (84%), Positives = 147/163 (90%)

Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
            QVEG T+KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH
Sbjct: 54  LQVEGGTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 113

Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           AD+NIVIM+IGNKTDLKHLRAVATEDAQ Y+E+EGLSFIETSALEA NVEKAFQTIL+EI
Sbjct: 114 ADANIVIMLIGNKTDLKHLRAVATEDAQGYSEKEGLSFIETSALEATNVEKAFQTILAEI 173

Query: 132 YRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCCSSS 174
           YRIISKKSLSS EPA +NIKE  TI VGG     +K  CC+SS
Sbjct: 174 YRIISKKSLSSNEPASANIKESMTITVGGPQSNASKPSCCTSS 216

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
TAIR|locus:2024276	217	RAB11c "RAB GTPase 11C" [Arabi	0.931	0.746	0.889	2e-72
TAIR|locus:2102777	217	RABA2c "RAB GTPase homolog A2C	0.919	0.737	0.731	4.6e-57
TAIR|locus:2024992	214	RABA2b "RAB GTPase homolog A2B	0.919	0.747	0.720	5.9e-57
TAIR|locus:2168469	217	RABA2D "RAB GTPase homolog A2D	0.919	0.737	0.713	6.8e-56
TAIR|locus:2018698	218	RABA1i "RAB GTPase homolog A1I	0.925	0.738	0.631	1.1e-53
UNIPROTKB|Q5ZJN2	216	RAB11A "Ras-related protein Ra	0.913	0.736	0.658	1e-52
TAIR|locus:2159285	217	RABA1f "RAB GTPase homolog A1F	0.913	0.732	0.641	1e-52
UNIPROTKB|F2Z4D5	216	RAB11A "Ras-related protein Ra	0.913	0.736	0.658	1.3e-52
UNIPROTKB|P62490	216	RAB11A "Ras-related protein Ra	0.913	0.736	0.658	1.3e-52
UNIPROTKB|P62491	216	RAB11A "Ras-related protein Ra	0.913	0.736	0.658	1.3e-52

TAIR|locus:2024276 RAB11c "RAB GTPase 11C" [Arabidopsis thaliana (taxid:3702)]

 Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
 Identities = 145/163 (88%), Positives = 154/163 (94%)

Query:    13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
             QVEGRT+KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA
Sbjct:    55 QVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 114

Query:    73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
             DSNIVIM+IGNKTDLKHLRAVATEDAQSYAE+EGLSFIETSALEA+NVEKAFQTILSE+Y
Sbjct:   115 DSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVY 174

Query:   133 RIISKKSLSSGEP-APSNIKEGQTIVVGGASEANTKKPCCSSS 174
             RIISKKS+SS +  A +NIKEGQTI V   SE+N KKPCCSSS
Sbjct:   175 RIISKKSISSDQTTANANIKEGQTIDVAATSESNAKKPCCSSS 217

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000910 "cytokinesis" evidence=IMP

GO:0005768 "endosome" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0019932 "second-messenger-mediated signaling" evidence=RCA

TAIR|locus:2102777 RABA2c "RAB GTPase homolog A2C" [Arabidopsis thaliana (taxid:3702)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 120/164 (73%), Positives = 135/164 (82%)

Query:    13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
             QVEG+TIKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+TK  TF+NV RWL+ELRDHA
Sbjct:    55 QVEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA 114

Query:    73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
             DSNIVIMM GNK+DL HLR+VA ED QS AE+EGLSF+ETSALEA NVEKAFQTIL EIY
Sbjct:   115 DSNIVIMMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIY 174

Query:   133 RIISKKSLSSGEPAPSNIK---EGQTIVVGGASEANTKKPCCSS 173
              IISKK+L++ E A +N     +G TI V   S    K+ CCSS
Sbjct:   175 HIISKKALAAQEAAAANSAIPGQGTTINVDDTS-GGAKRACCSS 217

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2024992 RABA2b "RAB GTPase homolog A2B" [Arabidopsis thaliana (taxid:3702)]

 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 116/161 (72%), Positives = 136/161 (84%)

Query:    13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
             QVEG+T+KAQIWDTAGQERYRAITSAYYRGA+GALLVYD+TK  TFENV RWL+ELRDHA
Sbjct:    55 QVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFENVLRWLRELRDHA 114

Query:    73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
             DSNIVIMM GNK+DL HLR+VA ED +S AE+EGLSF+ETSALEA N+EKAFQTILSEIY
Sbjct:   115 DSNIVIMMAGNKSDLNHLRSVADEDGRSLAEKEGLSFLETSALEATNIEKAFQTILSEIY 174

Query:   133 RIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCCSS 173
              IISKK+L++ E A +   +G  I +  +S  N +K CCS+
Sbjct:   175 HIISKKALAAQEAAGNLPGQGTAINISDSSATN-RKGCCST 214

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2168469 RABA2D "RAB GTPase homolog A2D" [Arabidopsis thaliana (taxid:3702)]

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 117/164 (71%), Positives = 135/164 (82%)

Query:    13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
             QVEG+T+KAQIWDTAGQERYRAITSAYYRGA+GALLVYD+TK  TF+NV RWL+ELRDHA
Sbjct:    55 QVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA 114

Query:    73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
             DSNIVIMM GNK DL HLR+VA ED Q+ AE EGLSF+ETSALEA NVEKAFQT+L+EIY
Sbjct:   115 DSNIVIMMAGNKADLNHLRSVAEEDGQTLAETEGLSFLETSALEATNVEKAFQTVLAEIY 174

Query:   133 RIISKKSLSSGEPAPSNIK---EGQTIVVGGASEANTKKPCCSS 173
              IISKK+L++ E A +N     +G TI V   S A  K+ CCS+
Sbjct:   175 HIISKKALAAQEAAAANSAIPGQGTTINVEDTSGAG-KRGCCST 217

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2018698 RABA1i "RAB GTPase homolog A1I" [Arabidopsis thaliana (taxid:3702)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 103/163 (63%), Positives = 135/163 (82%)

Query:    13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
             Q + + +KAQIWDTAGQERYRAITSAYYRGA+GALLVYDVT+  TFENV RWLKELRDH 
Sbjct:    56 QCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHT 115

Query:    73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
             D+NIVIM++GNK DL+HLRA++TE+A+++AERE   F+ETSALEA+NV+ AF  +L++IY
Sbjct:   116 DANIVIMLVGNKADLRHLRAISTEEAKAFAERENTFFMETSALEAVNVDNAFTEVLTQIY 175

Query:   133 RIISKKSLSSGEPAPSNIKEGQTIVVGGASEANT-KKP-CCSS 173
             R++SKK+L +G+   + + +GQ I VGG  + +  KKP CCS+
Sbjct:   176 RVVSKKALEAGDDPTTALPKGQMINVGGRDDISAVKKPGCCSA 218

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

UNIPROTKB|Q5ZJN2 RAB11A "Ras-related protein Rab-11A" [Gallus gallus (taxid:9031)]

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 108/164 (65%), Positives = 133/164 (81%)

Query:    13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
             QV+G+TIKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+ K  T+ENV RWLKELRDHA
Sbjct:    54 QVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 113

Query:    73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
             DSNIVIM++GNK+DL+HLRAV T++A+++AE+ GLSFIETSAL++ NVE AFQTIL+EIY
Sbjct:   114 DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173

Query:   133 RIISKKSLSS---GEPAPSNIKEGQTIVVGGASEANTKKPCCSS 173
             RI+S+K +S     + +PSN      I V   +E   K  CC +
Sbjct:   174 RIVSQKQMSDRRENDMSPSN--NVVPIHVPPTTENKPKMQCCQN 215

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0055038 "recycling endosome membrane" evidence=IEA

GO:0000910 "cytokinesis" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0072659 "protein localization to plasma membrane" evidence=IEA

GO:0032154 "cleavage furrow" evidence=ISS

TAIR|locus:2159285 RABA1f "RAB GTPase homolog A1F" [Arabidopsis thaliana (taxid:3702)]

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 104/162 (64%), Positives = 132/162 (81%)

Query:    14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
             V+ + +KAQIWDTAGQERYRAITSAYYRGA+GALLVYDVT+  TFENV RWLKELRDH D
Sbjct:    57 VDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD 116

Query:    74 SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133
             +NIVIM +GNK DL+HLRAV+TEDA+++AERE   F+ETSALE++NVE AF  +LS+IYR
Sbjct:   117 ANIVIMFVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLSQIYR 176

Query:   134 IISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKP--CCSS 173
             ++S+K+L  G+  P+ + +GQTI VG   + +  K   CCS+
Sbjct:   177 VVSRKALDIGDD-PAALPKGQTINVGSKDDVSAVKKVGCCSN 217

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005829 "cytosol" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

UNIPROTKB|F2Z4D5 RAB11A "Ras-related protein Rab-11A" [Bos taurus (taxid:9913)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 108/164 (65%), Positives = 133/164 (81%)

Query:    13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
             QV+G+TIKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+ K  T+ENV RWLKELRDHA
Sbjct:    54 QVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 113

Query:    73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
             DSNIVIM++GNK+DL+HLRAV T++A+++AE+ GLSFIETSAL++ NVE AFQTIL+EIY
Sbjct:   114 DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173

Query:   133 RIISKKSLSS---GEPAPSNIKEGQTIVVGGASEANTKKPCCSS 173
             RI+S+K +S     + +PSN      I V   +E   K  CC +
Sbjct:   174 RIVSQKQMSDRRENDMSPSN--NVVPIHVPPTTENKPKVQCCQN 215

GO:0072659 "protein localization to plasma membrane" evidence=IEA

GO:0055037 "recycling endosome" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0032154 "cleavage furrow" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0000910 "cytokinesis" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P62490 RAB11A "Ras-related protein Rab-11A" [Canis lupus familiaris (taxid:9615)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 108/164 (65%), Positives = 133/164 (81%)

Query:    13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
             QV+G+TIKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+ K  T+ENV RWLKELRDHA
Sbjct:    54 QVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 113

Query:    73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
             DSNIVIM++GNK+DL+HLRAV T++A+++AE+ GLSFIETSAL++ NVE AFQTIL+EIY
Sbjct:   114 DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173

Query:   133 RIISKKSLSS---GEPAPSNIKEGQTIVVGGASEANTKKPCCSS 173
             RI+S+K +S     + +PSN      I V   +E   K  CC +
Sbjct:   174 RIVSQKQMSDRRENDMSPSN--NVVPIHVPPTTENKPKVQCCQN 215

GO:0045335 "phagocytic vesicle" evidence=ISS

GO:0055037 "recycling endosome" evidence=ISS

GO:0032402 "melanosome transport" evidence=ISS

GO:0072659 "protein localization to plasma membrane" evidence=ISS

GO:0031175 "neuron projection development" evidence=ISS

GO:0032154 "cleavage furrow" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0055038 "recycling endosome membrane" evidence=IEA

GO:0030670 "phagocytic vesicle membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0000910 "cytokinesis" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P62491 RAB11A "Ras-related protein Rab-11A" [Homo sapiens (taxid:9606)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 108/164 (65%), Positives = 133/164 (81%)

Query:    13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
             QV+G+TIKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+ K  T+ENV RWLKELRDHA
Sbjct:    54 QVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 113

Query:    73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
             DSNIVIM++GNK+DL+HLRAV T++A+++AE+ GLSFIETSAL++ NVE AFQTIL+EIY
Sbjct:   114 DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173

Query:   133 RIISKKSLSS---GEPAPSNIKEGQTIVVGGASEANTKKPCCSS 173
             RI+S+K +S     + +PSN      I V   +E   K  CC +
Sbjct:   174 RIVSQKQMSDRRENDMSPSN--NVVPIHVPPTTENKPKVQCCQN 215

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0030133 "transport vesicle" evidence=IEA

GO:0048169 "regulation of long-term neuronal synaptic plasticity" evidence=IEA

GO:0051223 "regulation of protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030670 "phagocytic vesicle membrane" evidence=IEA

GO:0055038 "recycling endosome membrane" evidence=IEA

GO:0019905 "syntaxin binding" evidence=NAS

GO:0048227 "plasma membrane to endosome transport" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0032154 "cleavage furrow" evidence=IDA

GO:0000910 "cytokinesis" evidence=IMP

GO:0003924 "GTPase activity" evidence=IDA

GO:0031175 "neuron projection development" evidence=IMP

GO:0072659 "protein localization to plasma membrane" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

GO:0032402 "melanosome transport" evidence=ISS

GO:0055037 "recycling endosome" evidence=ISS

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0006833 "water transport" evidence=TAS

GO:0030659 "cytoplasmic vesicle membrane" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R9M7	RB11A_PONAB	No assigned EC number	0.6545	0.9195	0.7407	yes	no
Q2TA29	RB11A_BOVIN	No assigned EC number	0.6585	0.9137	0.7361	yes	no
P36412	RB11A_DICDI	No assigned EC number	0.5714	0.9137	0.7429	yes	no
Q39434	RB2BV_BETVU	No assigned EC number	0.7222	0.9252	0.7523	N/A	no
P17610	YPT3_SCHPO	No assigned EC number	0.6219	0.8908	0.7242	yes	no
Q5ZJN2	RB11A_CHICK	No assigned EC number	0.6545	0.9195	0.7407	yes	no
O04486	RAA2A_ARATH	No assigned EC number	0.8841	0.9367	0.7511	yes	no
Q39572	YPTC6_CHLRE	No assigned EC number	0.7239	0.9137	0.7361	N/A	no
Q52NJ1	RB11A_PIG	No assigned EC number	0.6545	0.9195	0.7407	yes	no
P62491	RB11A_HUMAN	No assigned EC number	0.6545	0.9195	0.7407	yes	no
P62490	RB11A_CANFA	No assigned EC number	0.6545	0.9195	0.7407	yes	no
P62493	RB11A_RABIT	No assigned EC number	0.6545	0.9195	0.7407	yes	no
P62492	RB11A_MOUSE	No assigned EC number	0.6545	0.9195	0.7407	yes	no
P62494	RB11A_RAT	No assigned EC number	0.6545	0.9195	0.7407	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	174
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	3e-91
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-87
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	8e-77
pfam00071	162	pfam00071, Ras, Ras family	6e-65
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	2e-62
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	3e-55
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	5e-53
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	5e-51
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	4e-50
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	6e-48
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	2e-45
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	2e-44
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	4e-44
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	9e-44
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	9e-43
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	2e-42
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	8e-42
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	9e-39
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	2e-38
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	1e-36
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	1e-36
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	1e-35
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	4e-34
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	3e-33
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	3e-32
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	6e-32
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	1e-30
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	4e-30
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	9e-30
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	1e-29
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	3e-29
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	5e-28
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	7e-28
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	8e-28
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	1e-27
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	2e-26
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	3e-26
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	7e-26
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	1e-25
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	2e-25
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	1e-24
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	2e-23
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	1e-22
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	3e-22
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	5e-22
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	7e-22
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	2e-21
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	2e-21
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	2e-20
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	8e-20
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	6e-19
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	1e-18
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	1e-18
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	2e-18
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	3e-18
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	4e-18
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	4e-18
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	3e-17
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	5e-17
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	3e-16
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	6e-16
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	7e-16
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	2e-15
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	2e-15
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	1e-14
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	9e-14
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	2e-13
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	4e-13
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	9e-13
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	1e-12
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	6e-12
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	7e-12
pfam08477	116	pfam08477, Miro, Miro-like protein	4e-11
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	1e-10
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	3e-10
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	8e-10
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	4e-09
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	4e-09
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	1e-08
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	5e-08
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	1e-07
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	3e-07
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	4e-07
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	3e-06
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	3e-06
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	3e-06
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	4e-06
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	1e-05
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	2e-05
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	3e-05
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	6e-05
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	9e-05
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	1e-04
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	1e-04
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	2e-04
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	4e-04
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	0.001
PRK09330	384	PRK09330, PRK09330, cell division protein FtsZ; Va	0.001
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	0.003
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	0.004

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  264 bits (676), Expect = 3e-91
 Identities = 118/163 (72%), Positives = 136/163 (83%), Gaps = 3/163 (1%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           QVEG+T+KAQIWDTAGQERYRAITSAYYRGA+GALLVYD+TK  TF+NV RWL+ELRDHA
Sbjct: 55  QVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHA 114

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
           DSNIVIMM GNK+DL HLR+VA ED Q+ AE+EGLSF+ETSALEA NVEKAFQTIL EIY
Sbjct: 115 DSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIY 174

Query: 133 RIISKKSLSSGEPAPSNIKEGQ--TIVVGGASEANTKKPCCSS 173
            IISKK+L++ E A ++   GQ  TI V   S  N K+ CCS+
Sbjct: 175 HIISKKALAAQEAAANSGLPGQGTTINVADTS-GNNKRGCCST 216

Length = 216

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  253 bits (649), Expect = 1e-87
 Identities = 93/121 (76%), Positives = 113/121 (93%)

Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
            Q++G+TIKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+TK +TFENV RWLKELRDH
Sbjct: 45  IQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDH 104

Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           ADSNIVIM++GNK+DL+HLRAV TE+A+++AE+ GLSFIETSAL+  NVE+AF+ +L+EI
Sbjct: 105 ADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164

Query: 132 Y 132
           Y
Sbjct: 165 Y 165

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  226 bits (578), Expect = 8e-77
 Identities = 69/122 (56%), Positives = 96/122 (78%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           +V+G+ +K QIWDTAGQER+R+ITS+YYRGA+GALLVYD+T   +FEN+  WLKELR++A
Sbjct: 43  EVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYA 102

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
             N+VIM++GNK+DL+  R V+ E+A+++AE  GL F ETSA    NVE+AF+ +  EI 
Sbjct: 103 SPNVVIMLVGNKSDLEEQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREIL 162

Query: 133 RI 134
           + 
Sbjct: 163 KR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  196 bits (500), Expect = 6e-65
 Identities = 64/120 (53%), Positives = 89/120 (74%)

Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           V+G+T+K QIWDTAGQER+RA+   YYRGA G LLVYD+T   +FENV +WL+E+  HAD
Sbjct: 43  VDGKTVKLQIWDTAGQERFRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHAD 102

Query: 74  SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133
            N+ I+++GNK DL+  R V+TE+ ++ A+  GL F+ETSA    NVE+AF+ +  EI +
Sbjct: 103 ENVPIVLVGNKCDLEDQRVVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  189 bits (483), Expect = 2e-62
 Identities = 64/119 (53%), Positives = 92/119 (77%)

Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRD 70
             +V+G+ +K QIWDTAGQER+R+ITS+YYRGA GA+LVYDVT   +FEN+ +WL EL++
Sbjct: 41  TIEVDGKKVKLQIWDTAGQERFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKE 100

Query: 71  HADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILS 129
           +A  NI I+++GNK+DL+  R V+TE+AQ +A+  GL F ETSA    NV++AF+++  
Sbjct: 101 YAPPNIPIILVGNKSDLEDERQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  171 bits (436), Expect = 3e-55
 Identities = 58/119 (48%), Positives = 80/119 (67%)

Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++  T+K +IWDTAGQERYR++   YYRGA  A++VYD+T   +FE    W+KEL++H  
Sbjct: 45  LDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGP 104

Query: 74  SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
            NIVI + GNK DL+  R V+TE+AQ YA+  GL F+ETSA    NV + F  I  ++ 
Sbjct: 105 PNIVIALAGNKADLESKRQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKLP 163

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  166 bits (421), Expect = 5e-53
 Identities = 64/120 (53%), Positives = 89/120 (74%)

Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD+T+  TF +++ WL++ R H++
Sbjct: 48  IDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSN 107

Query: 74  SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133
           SN+ IM+IGNK DL+  R V+ E+ +++A   GL F+ETSA  A NVE+AF     EIY 
Sbjct: 108 SNMTIMLIGNKCDLESRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYD 167

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  160 bits (408), Expect = 5e-51
 Identities = 59/120 (49%), Positives = 86/120 (71%)

Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
            +++G+T+K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +
Sbjct: 44  IELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRY 103

Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           A  N+  +++GNK DL   + V   +A+ +A+  G+ F+ETSA  A NVE+AF T+  EI
Sbjct: 104 ASENVNKLLVGNKCDLTDKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREI 163

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  158 bits (402), Expect = 4e-50
 Identities = 57/124 (45%), Positives = 89/124 (71%)

Query: 8   KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
           K+   +++G+ IK QIWDTAGQER+R IT++YYRGA+G +LVYD+T   +FEN+  W++ 
Sbjct: 41  KIRTIELDGKKIKLQIWDTAGQERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRN 100

Query: 68  LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
           + +HA  ++  M++GNK D++  R V+ E+ ++ A   G+ F+ETSA   INVE+AF T+
Sbjct: 101 IDEHASEDVERMLVGNKCDMEEKRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTL 160

Query: 128 LSEI 131
             +I
Sbjct: 161 AKDI 164

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  154 bits (391), Expect = 6e-48
 Identities = 71/162 (43%), Positives = 101/162 (62%), Gaps = 5/162 (3%)

Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++ + IK QIWDTAGQE +R+IT +YYRGA GALLVYD+T+  TF +++ WL++ R HA+
Sbjct: 50  IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN 109

Query: 74  SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133
           +N+ IM+IGNK DL H RAV+TE+ + +A+  GL F+E SA  A NVE+AF    ++IY+
Sbjct: 110 ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYK 169

Query: 134 IISKKSLSSGEPAPSNIKEG----QTIVVGGASEANTKKPCC 171
            I          +   IK G         G    ++    CC
Sbjct: 170 KIQDGVFDVSNES-YGIKVGYGAIPGASGGRDGTSSQGGGCC 210

Length = 210

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  146 bits (370), Expect = 2e-45
 Identities = 57/119 (47%), Positives = 88/119 (73%), Gaps = 1/119 (0%)

Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G+ +K QIWDTAGQER+R IT +YYR A GA++ YD+T+ ++FE+V  W++E+  +  
Sbjct: 47  IQGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGA 106

Query: 74  SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEI 131
           SN+V+++IGNK DL+  R V  E+A + AE  G L+ +ETSA E+ NVE+AF  + +E+
Sbjct: 107 SNVVLLLIGNKCDLEEQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMATEL 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  143 bits (364), Expect = 2e-44
 Identities = 58/125 (46%), Positives = 85/125 (68%), Gaps = 2/125 (1%)

Query: 8   KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
           K+    V+G+ +K  IWDTAGQER+R +TS+YYRGA G +LVYDVT+  TF+N+  WL E
Sbjct: 38  KVKTVTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNE 97

Query: 68  LRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQT 126
           L  ++ + + V M++GNK D K  R V  E+ Q +A +  + FIETSA   I V++AF+ 
Sbjct: 98  LDTYSTNPDAVKMLVGNKID-KENREVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEE 156

Query: 127 ILSEI 131
           ++ +I
Sbjct: 157 LVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  143 bits (362), Expect = 4e-44
 Identities = 46/119 (38%), Positives = 80/119 (67%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
            V+ +T++ Q+WDTAGQER+R++  +Y R +  A++VYD+T   +F+N  +W+ ++RD  
Sbjct: 43  YVDDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDER 102

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
            ++++I+++GNKTDL   R V+TE+ +  A+     FIETSA    NV++ F+ I   +
Sbjct: 103 GNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  142 bits (359), Expect = 9e-44
 Identities = 61/121 (50%), Positives = 85/121 (70%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           +V G+ IK QIWDTAGQER+RA+T +YYRGA GAL+VYD+T+ +T+ ++S WL + R+  
Sbjct: 45  EVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT 104

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
           + N VI +IGNK DL+  R V  E+A+ +A+  GL F+E SA    NVE AF     +IY
Sbjct: 105 NPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIY 164

Query: 133 R 133
           +
Sbjct: 165 Q 165

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  139 bits (352), Expect = 9e-43
 Identities = 58/111 (52%), Positives = 80/111 (72%)

Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           V G+++K QIWDTAGQER+R++T +YYRGA GALLVYD+T   +F  ++ WL + R  A 
Sbjct: 44  VGGKSVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLAS 103

Query: 74  SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
            +IVI+++GNK DL+  R V   +A  +A+  GL F+ETSAL   NVE+AF
Sbjct: 104 PDIVIILVGNKKDLEDDREVTFLEASRFAQENGLLFLETSALTGENVEEAF 154

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  140 bits (354), Expect = 2e-42
 Identities = 65/163 (39%), Positives = 96/163 (58%), Gaps = 6/163 (3%)

Query: 15  EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD- 73
            G  IK Q+WDTAGQER+R+IT +YYR ++G LLV+D+T   +FE+V  WL+E R H   
Sbjct: 48  PGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQP 107

Query: 74  SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133
              V +++G+K DL+  R V  E+A+  A+  G+ +IETSA    NVE+AF+ +  EIY 
Sbjct: 108 HRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYE 167

Query: 134 IISKKSLSSG---EPAPSNIKEGQTIVVGGAS--EANTKKPCC 171
            I +  L +    +   S    G+   +   S   A+ +K CC
Sbjct: 168 RIKRGELCALDGWDGVKSGFPAGRAFSLEERSPTFASPEKSCC 210

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  137 bits (347), Expect = 8e-42
 Identities = 49/115 (42%), Positives = 73/115 (63%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
            + G+ I   IWDTAGQERY A+   YYR A GA+LVYD+T   +F+ V +W+KEL+   
Sbjct: 43  NIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMR 102

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
            +NI ++++GNK DL+  R V+  +A+ YA+  G    ETSA     +E+ F ++
Sbjct: 103 GNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSL 157

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  130 bits (329), Expect = 9e-39
 Identities = 62/158 (39%), Positives = 90/158 (56%), Gaps = 9/158 (5%)

Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           + G  +K QIWDTAGQER+R ITS YYRG  G ++VYDVT   +F NV RWL+E+  + D
Sbjct: 50  INGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD 109

Query: 74  SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133
             +  +++GNK D    + V TEDA  +A + G+S  ETSA E INVE+ F         
Sbjct: 110 D-VCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC------- 161

Query: 134 IISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 171
            I++  L + +   +  ++ Q   V    + + +K  C
Sbjct: 162 -ITELVLRAKKDNLAKQQQQQQNDVVKLPKNSKRKKRC 198

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  129 bits (327), Expect = 2e-38
 Identities = 57/118 (48%), Positives = 82/118 (69%)

Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           V+G  +K QIWDTAGQER+R++T AYYR A   LL+YDVT  ++F+N+  WL E+ ++A 
Sbjct: 45  VDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQ 104

Query: 74  SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S++VIM++GNK D+   R V  ED +  A+  G+ F+ETSA   +NVE AF  +  E+
Sbjct: 105 SDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKEL 162

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  124 bits (312), Expect = 1e-36
 Identities = 53/126 (42%), Positives = 82/126 (65%), Gaps = 5/126 (3%)

Query: 11  DFQVE-----GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWL 65
           DF+V+      + IK QIWDTAGQERYR IT+AYYRGA+G +L+YD+T   +F  V  W 
Sbjct: 37  DFKVKTVYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWS 96

Query: 66  KELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQ 125
            +++ ++  N  ++++GNK D++  R V+ E  +  A++ G  F E SA E INV++ F+
Sbjct: 97  TQIKTYSWDNAQVILVGNKCDMEDERVVSAERGRQLADQLGFEFFEASAKENINVKQVFE 156

Query: 126 TILSEI 131
            ++  I
Sbjct: 157 RLVDII 162

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  124 bits (313), Expect = 1e-36
 Identities = 54/122 (44%), Positives = 80/122 (65%), Gaps = 5/122 (4%)

Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRD 70
           +  V+ R +  QIWDTAGQER++++  A+YRGA   +LVYDVT P +FE++  W  E   
Sbjct: 41  EVTVDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLI 100

Query: 71  HAD----SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQ 125
            A      N   +++GNK DL+  R V+T+ AQ + + +G + + ETSA EAINV++AF+
Sbjct: 101 QASPRDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFE 160

Query: 126 TI 127
           TI
Sbjct: 161 TI 162

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  121 bits (306), Expect = 1e-35
 Identities = 47/119 (39%), Positives = 80/119 (67%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           +++G  IK QIWDTAGQER+R+IT +YYR A   +L YD+T   +F  +  WL+E+  +A
Sbjct: 50  EIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA 109

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           ++ ++ +++GNK DL   R V+ + A+ +++ + + ++ETSA E+ NVEK F  +   +
Sbjct: 110 NNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  118 bits (297), Expect = 4e-34
 Identities = 51/117 (43%), Positives = 77/117 (65%), Gaps = 1/117 (0%)

Query: 16  GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS- 74
              +  Q+WDTAGQER+R++T+A++R A+G LL++D+T   +F NV  W+ +L+ HA   
Sbjct: 60  AFRVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCE 119

Query: 75  NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           N  I++IGNK DL   R V+   A+  A++ G+ + ETSA    NVEKA +T+L  I
Sbjct: 120 NPDIVLIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 176

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  115 bits (290), Expect = 3e-33
 Identities = 44/119 (36%), Positives = 71/119 (59%), Gaps = 1/119 (0%)

Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRD-HA 72
           V+G T    I DTAGQE + A+   Y R   G +LVY +T   +FE +    +++     
Sbjct: 42  VDGETYTLDILDTAGQEEFSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKD 101

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
             ++ I+++GNK DL++ R V+TE+ ++ AE  G  F+ETSA   IN+++ F T++ EI
Sbjct: 102 KEDVPIVLVGNKCDLENERQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  112 bits (283), Expect = 3e-32
 Identities = 40/120 (33%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP--TTFENVSRWLKELR 69
            + +G+T K  + DTAGQE Y AI   YYR    +L V+D+        E + +  KE+ 
Sbjct: 44  IEEDGKTYKFNLLDTAGQEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEII 103

Query: 70  DHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILS 129
            HA+S + I+++GNK DL+  + + T  A  +A+  G   I  SA    N++ AF+ + +
Sbjct: 104 HHAESGVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVEA 162

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  113 bits (284), Expect = 6e-32
 Identities = 53/149 (35%), Positives = 93/149 (62%), Gaps = 9/149 (6%)

Query: 8   KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
           K+   ++ G+ I+ QIWDTAGQER+ +ITSAYYR A G +LVYD+TK  TF+++ +W+K 
Sbjct: 38  KIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKM 97

Query: 68  LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAER-EGLSFIETSALEAINVEKAFQT 126
           +  +A  +  ++++GNK D +  R +  +  + +A++  G+ F E SA +  NV++ F  
Sbjct: 98  IDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLK 157

Query: 127 ILSEIYR-----IISKK---SLSSGEPAP 147
           ++ +I +     I+  +   S+ S +P P
Sbjct: 158 LVDDILKKMPLDILRNELSNSILSLQPEP 186

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  109 bits (274), Expect = 1e-30
 Identities = 52/122 (42%), Positives = 81/122 (66%), Gaps = 5/122 (4%)

Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++GR +K Q+WDT+GQ R+  I  +Y RGA G +LVYD+T   +F+ + RW+KE+ +HA 
Sbjct: 50  LDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA- 108

Query: 74  SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133
             +  +++GN+  L   R VATE AQ+YAER G++F E S L   N+ ++F    +E+ R
Sbjct: 109 PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESF----TELAR 164

Query: 134 II 135
           I+
Sbjct: 165 IV 166

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  108 bits (272), Expect = 4e-30
 Identities = 63/173 (36%), Positives = 93/173 (53%), Gaps = 20/173 (11%)

Query: 8   KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSR-WLK 66
           K+    V G+ +K  IWDTAGQER+R +TS+YYR A G +LVYDVT+  TF N+S  W K
Sbjct: 51  KIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGK 110

Query: 67  ELRDHA-DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQ 125
           E+  ++ + + V M++GNK D +  R V+ E+  + A+  G  F+E SA    NVE+ F+
Sbjct: 111 EVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFE 170

Query: 126 TILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGG------ASEANTKKPCCS 172
            +  +I  +            PS ++EG T V           +      CCS
Sbjct: 171 ELALKIMEV------------PSLLEEGSTAVKRNILKQKPEHQPPPNGGCCS 211

Length = 211

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  106 bits (267), Expect = 9e-30
 Identities = 46/121 (38%), Positives = 70/121 (57%), Gaps = 5/121 (4%)

Query: 13  QVEGRTIKAQIWDTAGQERYR-AITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
           +++G  IK Q+WDTAGQER+R ++   YYR     + VYDVT   +F ++  W++E   H
Sbjct: 45  EIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQH 104

Query: 72  ADSNIVI-MMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSA---LEAINVEKAFQTI 127
           +  N V  +++GNK DL+    V T+ AQ +A+   +   ETSA    E  +VE  F T+
Sbjct: 105 SLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTL 164

Query: 128 L 128
            
Sbjct: 165 A 165

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  107 bits (269), Expect = 1e-29
 Identities = 56/163 (34%), Positives = 86/163 (52%), Gaps = 13/163 (7%)

Query: 15  EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH--- 71
               ++ Q+WD AGQER+  +T  YY+GA+GA++V+DVT+P+TFE V +W  +L      
Sbjct: 46  PNTVVRLQLWDIAGQERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTL 105

Query: 72  -ADSNIVIMMIGNKTDLKHLR-AVATEDAQSYAEREGLS-FIETSALEAINVEKAFQTIL 128
                I  +++ NK DLK  R A   E    + +  G   + ETSA E IN+E+A + ++
Sbjct: 106 PNGEPIPALLLANKCDLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLV 165

Query: 129 SEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 171
             I  + + K L S EP      E   I +   +  +  K CC
Sbjct: 166 KNI--LKNDKGLQSPEPD-----EDNVIDLKQETTTSKSKSCC 201

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  105 bits (263), Expect = 3e-29
 Identities = 42/126 (33%), Positives = 67/126 (53%), Gaps = 5/126 (3%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
            V  + ++   +D +G   Y  + + +Y+   G LLVYDVT   +FE +  WLKE++   
Sbjct: 43  SVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEG 102

Query: 73  DS-----NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
                  NIV+++  NK DL   RAV+ ++ + +AE +G  + ETSA     V + FQT+
Sbjct: 103 GPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTL 162

Query: 128 LSEIYR 133
            S I  
Sbjct: 163 FSSIVD 168

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  101 bits (255), Expect = 5e-28
 Identities = 46/122 (37%), Positives = 72/122 (59%), Gaps = 3/122 (2%)

Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE--LRDH 71
           ++G      I DTAGQE + A+   Y R   G LLVY +T   +FE + +  +E  LR  
Sbjct: 43  IDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKK-FREQILRVK 101

Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
              ++ I+++GNK DL+  R V+TE+ +  A + G  F+ETSA E +NV++AF  ++ EI
Sbjct: 102 DRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREI 161

Query: 132 YR 133
            +
Sbjct: 162 RK 163

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  103 bits (257), Expect = 7e-28
 Identities = 53/145 (36%), Positives = 74/145 (51%), Gaps = 18/145 (12%)

Query: 16  GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPT-TFENVSRWLKELRDHADS 74
            R IK Q+WDTAGQE YR++   YYRGA G L+VYD T    + E    WL+ELR+ A  
Sbjct: 51  RRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPD 110

Query: 75  NIVIMMIGNKTDL------------KHLRAVATEDAQSYA---EREGLSFIETSA--LEA 117
           ++ I+++GNK DL            +  R V        A   E    + +ETSA  L  
Sbjct: 111 DVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTG 170

Query: 118 INVEKAFQTILSEIYRIISKKSLSS 142
            NV + F+ +L ++   I K  L +
Sbjct: 171 PNVNELFKELLRKLLEEIEKLVLKN 195

Length = 219

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  101 bits (253), Expect = 8e-28
 Identities = 44/120 (36%), Positives = 74/120 (61%)

Query: 8   KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
           K+   +V+G  ++ QIWDTAGQERY+ IT  YYR A G  LVYD++   +++++ +W+ +
Sbjct: 38  KMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSD 97

Query: 68  LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
           + ++A   +  ++IGNK D +  R V  E     A+  G+ F ETSA    N++++F  +
Sbjct: 98  VDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRL 157

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  101 bits (253), Expect = 1e-27
 Identities = 47/122 (38%), Positives = 74/122 (60%), Gaps = 3/122 (2%)

Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE--LRDH 71
           ++G      I DTAGQE + A+   Y R   G LLVY +T   +FE +++  +E  LR  
Sbjct: 45  IDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAK-FREQILRVK 103

Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
              ++ I+++GNK DL++ R V+TE+ +  A + G  F+ETSA E INV++AF  ++ EI
Sbjct: 104 DRDDVPIVLVGNKCDLENERVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDLVREI 163

Query: 132 YR 133
            +
Sbjct: 164 RK 165

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 98.8 bits (246), Expect = 2e-26
 Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 5/119 (4%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
            V  R +   IWDTAG ERY A++  YYRGA  A++ YD+T  ++FE    W+KEL++  
Sbjct: 44  VVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQN-L 102

Query: 73  DSNIVIMMIGNKTDL----KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
           + +  I + G K+DL    + LR V   D Q +A+       ETS+    NV++ FQ +
Sbjct: 103 EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKV 161

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 97.9 bits (243), Expect = 3e-26
 Identities = 47/152 (30%), Positives = 86/152 (56%), Gaps = 6/152 (3%)

Query: 19  IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVI 78
           ++ Q+WDTAGQER+R++  +Y R +  A++VYD+T   +FEN ++W++++ +    +++I
Sbjct: 29  VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVII 88

Query: 79  MMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK 138
            ++GNKTDL  LR V  E+    A+     F ETSA    N++  F+ I +++       
Sbjct: 89  ALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKL------P 142

Query: 139 SLSSGEPAPSNIKEGQTIVVGGASEANTKKPC 170
           +L +     +N+ + Q      A++ N    C
Sbjct: 143 NLDNSNSNDANVVDIQLTNNSNANDKNMLSKC 174

Length = 176

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 96.7 bits (241), Expect = 7e-26
 Identities = 45/121 (37%), Positives = 74/121 (61%), Gaps = 1/121 (0%)

Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSR-WLKELRDHA 72
           ++G  ++  I DTAGQE Y AI   Y+R   G LLV+ +T   +F  ++    + LR   
Sbjct: 43  LDGEEVQLNILDTAGQEDYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKE 102

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
           D N+ ++++GNK DL+  R V+ E+A + AE+ G++++ETSA    NV+K F  ++ EI 
Sbjct: 103 DDNVPLLLVGNKCDLEDKRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREIR 162

Query: 133 R 133
           +
Sbjct: 163 Q 163

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 96.1 bits (239), Expect = 1e-25
 Identities = 48/126 (38%), Positives = 76/126 (60%), Gaps = 6/126 (4%)

Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRD 70
           D +V+G  +  QIWDTAGQER+R++ + +YRG+   LL + V    +F+N+S W KE   
Sbjct: 46  DLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIY 105

Query: 71  HAD----SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLS-FIETSALEAINVEKAFQ 125
           +AD     +   +++GNK D+   R V+TE+AQ++    G   + ETSA +A NV  AF+
Sbjct: 106 YADVKEPESFPFVILGNKIDIPE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFE 164

Query: 126 TILSEI 131
             +  +
Sbjct: 165 EAVRRV 170

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 95.3 bits (237), Expect = 2e-25
 Identities = 43/120 (35%), Positives = 70/120 (58%), Gaps = 4/120 (3%)

Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRD 70
           + + EG+TI    WDTAGQER++ + ++YY  A   +LV+DVT+  T++N+S+W +ELR+
Sbjct: 41  NAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELRE 100

Query: 71  HADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE 130
           +    I  +++ NK DL       T+   ++AE+  L     SA +  NV K FQ  +  
Sbjct: 101 YRPE-IPCIVVANKIDLD---PSVTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 93.2 bits (232), Expect = 1e-24
 Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 7/130 (5%)

Query: 8   KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
           K C  +++G+  +  I DTAGQE + A+   Y R   G LLV+ VT   +FE V ++  +
Sbjct: 41  KQC--EIDGQWARLDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQ 98

Query: 68  -LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQT 126
            LR        ++++GNK DL+H R V+ E+ Q  A +  + +IETSA + +NV+KAF  
Sbjct: 99  ILRVKDRDEFPMILVGNKADLEHQRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFH- 157

Query: 127 ILSEIYRIIS 136
              ++ R+I 
Sbjct: 158 ---DLVRVIR 164

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 90.7 bits (225), Expect = 2e-23
 Identities = 46/121 (38%), Positives = 75/121 (61%), Gaps = 3/121 (2%)

Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR---D 70
           V+G+    ++ DTAGQE Y A+   + R   G +LVY +T  +TFE V R+ ++++   D
Sbjct: 42  VDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKD 101

Query: 71  HADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE 130
            + +++ IM++GNK D  + R V+TE+  + A R G  FIE SA   +NVE+AF T++  
Sbjct: 102 ESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRA 161

Query: 131 I 131
           +
Sbjct: 162 L 162

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 88.5 bits (220), Expect = 1e-22
 Identities = 44/114 (38%), Positives = 68/114 (59%), Gaps = 1/114 (0%)

Query: 22  QIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSR-WLKELRDHADSNIVIMM 80
           +I DTAGQ+ Y  +   Y  G  G +LVY VT   +FE V   + K L      ++ I++
Sbjct: 52  EIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVL 111

Query: 81  IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI 134
           +GNK+DL   R V+ E+ +  AE  G +F+E+SA E  NVE+AF+ ++ EI ++
Sbjct: 112 VGNKSDLHMERQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELLIEEIEKV 165

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 87.1 bits (216), Expect = 3e-22
 Identities = 45/119 (37%), Positives = 68/119 (57%), Gaps = 2/119 (1%)

Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++  + ++++   D
Sbjct: 44  IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKD 103

Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GNK DL   R V+T   Q  A+  G+ +IETSA     VE+AF T++ EI
Sbjct: 104 SDDVPMVLVGNKCDLAA-RTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 86.8 bits (215), Expect = 5e-22
 Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 8/126 (6%)

Query: 10  CDFQVE-------GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS 62
           CD  V+         +++  I+D+AGQE +  +    +       +VYDVT   +F N S
Sbjct: 37  CDLVVKTVPVPDTSDSVELFIFDSAGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCS 96

Query: 63  RWLKELRDHAD-SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVE 121
           RW+  +R H+   +   +++GNK DL   R V    AQ+ A+   L F ETSA E +  E
Sbjct: 97  RWINRVRTHSHGLHTPGVLVGNKCDLTDRREVDAAQAQALAQANTLKFYETSAKEGVGYE 156

Query: 122 KAFQTI 127
             F ++
Sbjct: 157 APFLSL 162

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 86.8 bits (215), Expect = 7e-22
 Identities = 48/142 (33%), Positives = 78/142 (54%), Gaps = 6/142 (4%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDH 71
            ++  T    I DTAGQE Y A+   Y R   G L VY +T  ++FE ++ + ++ LR  
Sbjct: 47  VIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVK 106

Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
               + ++++GNK DL   R V+T + Q  A+  G+ F+ETSA + +NV++AF  ++ EI
Sbjct: 107 DKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREI 166

Query: 132 YRIISKKSLSSGEPAPSNIKEG 153
                +K L    P+    K+G
Sbjct: 167 -----RKYLKEDMPSQKQKKKG 183

Length = 189

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 85.4 bits (212), Expect = 2e-21
 Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 7/137 (5%)

Query: 4   PRLGKL--CDFQVEGRTIKAQIWDTAGQERYRA--ITSAYYRGALGALLVYDVTKPTTFE 59
           P L  L      ++G  +  +I DT GQ++           R A G +LVY +T  ++F+
Sbjct: 30  PNLESLYSRQVTIDGEQVSLEIQDTPGQQQNEDPESLERSLRWADGFVLVYSITDRSSFD 89

Query: 60  NVSRWLKELRDHA--DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALE- 116
            VS+ L+ +R+    D  I ++++GNK DL H R V+TE+ Q  A   G  F E SA E 
Sbjct: 90  VVSQLLQLIREIKKRDGEIPVILVGNKADLLHSRQVSTEEGQKLALELGCLFFEVSAAEN 149

Query: 117 AINVEKAFQTILSEIYR 133
            + V+  F  +  E+ R
Sbjct: 150 YLEVQNVFHELCREVRR 166

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 85.2 bits (211), Expect = 2e-21
 Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 1/110 (0%)

Query: 16  GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSN 75
              ++  +WDTAGQE + AIT AYYRGA   +LV+  T   +FE +  W KE  +    +
Sbjct: 48  DEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESW-KEKVEAECGD 106

Query: 76  IVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQ 125
           I ++++  K DL     +  E+A++ A+R  L    TS  +  NV + F+
Sbjct: 107 IPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFE 156

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 82.7 bits (205), Expect = 2e-20
 Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 15/131 (11%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKEL 68
            D +V+G+ ++  +WDTAGQE Y  +    Y      L+ + V  P +FENV  +W  E+
Sbjct: 37  ADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEV 96

Query: 69  RDHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSAL 115
           +     N+ I+++G K DL            K    V  E  Q+ A+R G + ++E SAL
Sbjct: 97  KHFC-PNVPIILVGTKLDLRNDKSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSAL 155

Query: 116 EAINVEKAFQT 126
               V + F+ 
Sbjct: 156 TQEGVREVFEE 166

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 80.8 bits (200), Expect = 8e-20
 Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 3/114 (2%)

Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRD 70
           DF      I+  +WDTAGQE++  +   YY     A++++DVT   T++NV  W ++L  
Sbjct: 41  DFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLV- 99

Query: 71  HADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
               NI I++ GNK D+K  R V  +    +  ++ L + E SA    N EK F
Sbjct: 100 RVCENIPIVLCGNKVDIKD-RKVKPKQITFH-RKKNLQYYEISAKSNYNFEKPF 151

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 78.7 bits (194), Expect = 6e-19
 Identities = 43/123 (34%), Positives = 72/123 (58%), Gaps = 3/123 (2%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE--LRD 70
           +V+G+    +I DTAG E++ A+   Y +   G +LVY +T  +TF ++   L+E  LR 
Sbjct: 43  EVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQD-LREQILRV 101

Query: 71  HADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE 130
               ++ ++++GNK DL+  R V  E  Q+ A + G +F+ETSA   INV + F  ++ +
Sbjct: 102 KDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQ 161

Query: 131 IYR 133
           I R
Sbjct: 162 INR 164

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 78.2 bits (193), Expect = 1e-18
 Identities = 39/134 (29%), Positives = 71/134 (52%), Gaps = 16/134 (11%)

Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELR 69
              V+G+ ++ Q+ DTAGQ+ +  +    Y      LL + V  P++F+N+S +W+ E+R
Sbjct: 40  VVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIR 99

Query: 70  DHADSNIVIMMIGNKTDLK------------HLRAVATEDAQSYAEREG-LSFIETSALE 116
            H +    I+++G + DL+              + V+   A++ AE+ G   +IE SAL 
Sbjct: 100 KH-NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158

Query: 117 AINVEKAFQT-ILS 129
             N+++ F T IL+
Sbjct: 159 QKNLKEVFDTAILA 172

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 78.0 bits (192), Expect = 1e-18
 Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 3/116 (2%)

Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRD 70
           F+V G     Q+WDTAGQER++ I S YYRGA   ++V+D+T   + E+  +WL++ L++
Sbjct: 42  FEVLGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKE 101

Query: 71  HADSNIVIMMIGNKTDLKH--LRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
           +  S++++ ++G K DL      A+  +DA   A      +   SAL   NV   F
Sbjct: 102 NDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFF 157

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 77.2 bits (191), Expect = 2e-18
 Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 14/128 (10%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDH 71
            V+G+ +   +WDTAGQE Y  +    Y      LL + V  P++FENV ++W  E++ +
Sbjct: 42  TVDGKQVNLGLWDTAGQEEYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHY 101

Query: 72  ADSNIVIMMIGNKTDL-----------KHLRAVATEDAQSYAEREGLS-FIETSALEAIN 119
              N+ I+++G K DL           K  + +  E+ +  A+  G   ++E SAL    
Sbjct: 102 C-PNVPIILVGTKIDLRDDGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEG 160

Query: 120 VEKAFQTI 127
           +++ F   
Sbjct: 161 LKEVFDEA 168

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 77.9 bits (192), Expect = 3e-18
 Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 3/113 (2%)

Query: 22  QIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWL---KELRDHADSNIVI 78
           Q+WD  GQ+    +   Y  GA    LVYD+T   +FEN+  WL   K++ + +++   +
Sbjct: 53  QVWDIGGQQIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKM 112

Query: 79  MMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           +++GNKTDL+H R V  E    +A+   +  I  SA     V   FQ I +E+
Sbjct: 113 VLVGNKTDLEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAEL 165

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 77.8 bits (192), Expect = 4e-18
 Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 7/136 (5%)

Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
           F      I   +WDTAGQE++  +   YY     A++++DVT   T++NV  W +++   
Sbjct: 51  FYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV 110

Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
            + NI I+++GNK D+K  R V       +  ++ L + + SA    N EK F  +    
Sbjct: 111 CE-NIPIVLVGNKVDVKD-RQVKARQIT-FHRKKNLQYYDISAKSNYNFEKPFLWLAR-- 165

Query: 132 YRIISKKSLS-SGEPA 146
            R+ +  +L   G PA
Sbjct: 166 -RLTNDPNLVFVGAPA 180

Length = 215

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 76.4 bits (188), Expect = 4e-18
 Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 10/128 (7%)

Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA- 72
           ++GR    +I DTAG E++ A+   Y +   G LLVY VT     E     L ELR+   
Sbjct: 44  IDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTS----EASLNELGELREQVL 99

Query: 73  ----DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLS-FIETSALEAINVEKAFQTI 127
                 N+ ++++GNK DL+  R V+ ED  S +++ G   F ETSA +  NV++ F  +
Sbjct: 100 RIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159

Query: 128 LSEIYRII 135
           + +I  +I
Sbjct: 160 VRQIICVI 167

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 75.2 bits (185), Expect = 3e-17
 Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 3/114 (2%)

Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRD 70
           DF      I+   WDTAGQE++  +   YY     A++++DVT   T++NV  W ++L  
Sbjct: 54  DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 113

Query: 71  HADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
             + NI I++ GNK D+K+ R V  +    +  ++ L + E SA    N EK F
Sbjct: 114 VCE-NIPIVLCGNKVDVKN-RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPF 164

Length = 219

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 74.3 bits (183), Expect = 5e-17
 Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 16  GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADS 74
           G+ I+  +WDTAGQE Y  +    Y      L+ Y V  PT+ +NV  +W  E+  H   
Sbjct: 49  GKIIELALWDTAGQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVN-HFCP 107

Query: 75  NIVIMMIGNKTDLK-------HLRA-----VATEDAQSYAEREG-LSFIETSALEAINVE 121
              I+++G KTDL+        LRA     V  E  +S A+  G +++IE SA    NV+
Sbjct: 108 GTPIVLVGLKTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVD 167

Query: 122 KAFQTILSEIYR 133
           + F   ++    
Sbjct: 168 EVFDAAINVALS 179

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 71.4 bits (175), Expect = 3e-16
 Identities = 33/123 (26%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE--L 68
           + +V+      +I DTAG E++ ++   Y +   G ++VY +    TF+++ + +++  +
Sbjct: 41  EIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDI-KPMRDQIV 99

Query: 69  RDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTIL 128
           R      + I+++GNK DL+  R V++ + ++ AE  G  F+ETSA     V + F  I+
Sbjct: 100 RVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159

Query: 129 SEI 131
            ++
Sbjct: 160 RQM 162

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 70.6 bits (173), Expect = 6e-16
 Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 8/135 (5%)

Query: 1   MGQPRLGKLCDFQVEGRTIKAQIWDTAGQERY-----RAITSAYYRGALGALLVYDVTKP 55
            G  R   +   +++   +K  + DT G + +       +     RGA   LLV D T  
Sbjct: 29  PGTTRDPDVYVKELDKGKVKLVLVDTPGLDEFGGLGREELARLLLRGADLILLVVDSTDR 88

Query: 56  TTFENVSRWLKELRDHADSNIVIMMIGNKTDLK-HLRAVATEDAQSYAEREGLSFIETSA 114
            + E+    +          I++  +GNK DL            +  A+  G+   E SA
Sbjct: 89  ESEEDAKLLILRRLRKEGIPIIL--VGNKIDLLEEREVEELLRLEELAKILGVPVFEVSA 146

Query: 115 LEAINVEKAFQTILS 129
                V++ F+ ++ 
Sbjct: 147 KTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 70.7 bits (173), Expect = 7e-16
 Identities = 42/125 (33%), Positives = 70/125 (56%), Gaps = 10/125 (8%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH- 71
           +V+ +    +I DTAG E++ A+   Y +   G  LVY +T   +F +    L++LR+  
Sbjct: 43  EVDCQQCMLEILDTAGTEQFTAMRDLYIKNGQGFALVYSITAQQSFND----LQDLREQI 98

Query: 72  ---ADSNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQT 126
               D+  V M ++GNK DL+  R V+ E+ Q+ A + G   F+ETSA   INV++ F  
Sbjct: 99  LRVKDTEDVPMILVGNKCDLEDERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYD 158

Query: 127 ILSEI 131
           ++ +I
Sbjct: 159 LVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 70.4 bits (172), Expect = 2e-15
 Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 3/114 (2%)

Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRD 70
            F      I+  +WDTAGQE++  +   YY     A++++DVT   T++NV  W ++L  
Sbjct: 36  VFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVR 95

Query: 71  HADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
             + NI I++ GNK D+K  +  A     ++  ++ L + + SA    N EK F
Sbjct: 96  VCE-NIPIVLCGNKVDVKDRKVKAKS--ITFHRKKNLQYYDISAKSNYNFEKPF 146

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 69.5 bits (170), Expect = 2e-15
 Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 23  IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKEL--RDHADSNIVIMM 80
           I DTAGQ  + A+   Y R   G ++ Y VT   +F+  S + KEL  R     +I +++
Sbjct: 54  ILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEF-KELITRVRLTEDIPLVL 112

Query: 81  IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSL 140
           +GNK DL+  R V TE+ ++ A      F ETSA     ++ AF  ++ EI R  S  +L
Sbjct: 113 VGNKVDLEQQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREIRRKESMPAL 172

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 67.5 bits (165), Expect = 1e-14
 Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 3/111 (2%)

Query: 22  QIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS---RWLKELRDHADSNIVI 78
           QI DT G  ++ A+           +LVY +T   + E +      + E++ +    I I
Sbjct: 52  QITDTTGSHQFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPI 111

Query: 79  MMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILS 129
           M++GNK D    R V++ +  + A     +F+ETSA    NV++ FQ +L+
Sbjct: 112 MLVGNKCDESPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELFQELLN 162

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 65.3 bits (159), Expect = 9e-14
 Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 13/125 (10%)

Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHA 72
           V+G T+   +WDTAGQE Y  +    YRGA   LL + +    ++ENV  +W+ ELR +A
Sbjct: 44  VDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYA 103

Query: 73  DSNIVIMMIGNKTDLK--------HLRAVATEDAQSYAEREGL---SFIETSALEAINVE 121
              + I+++G K DL+        H  AV    AQ    R+ +   ++IE S+    NV+
Sbjct: 104 -PGVPIVLVGTKLDLRDDKQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVK 162

Query: 122 KAFQT 126
             F  
Sbjct: 163 AVFDA 167

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 64.9 bits (158), Expect = 2e-13
 Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LR 69
           +++V G  +   I DT+G   + A+     +      LVY V  P +FE V R  +E L 
Sbjct: 39  EYEVAGVKVTIDILDTSGSYSFPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILE 98

Query: 70  DHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAERE-GLSFIETSALEAINVEKAFQTIL 128
              D  + I+++GNK D    R V   DA S  E +    F+E SA +  NV + F+ +L
Sbjct: 99  VKEDKFVPIVVVGNKIDSLAERQVEAADALSTVELDWNNGFVEASAKDNENVTEVFKELL 158

Query: 129 SE 130
            +
Sbjct: 159 QQ 160

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 63.6 bits (155), Expect = 4e-13
 Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 6/126 (4%)

Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
             + G  I   IWD  GQ  +  +     + A+  L ++D+T+ +T  ++  W ++ R  
Sbjct: 42  ISIRGTEITFSIWDLGGQREFINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQARGF 101

Query: 72  ADSNIVIMMIGNKTDL-----KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQT 126
             + I I ++G K DL        +   T+ A+ YA+      I  S   +INV+K F+ 
Sbjct: 102 NKTAIPI-LVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKF 160

Query: 127 ILSEIY 132
           +L++++
Sbjct: 161 VLAKVF 166

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 62.4 bits (152), Expect = 9e-13
 Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 15/130 (11%)

Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
           D +V+G+ ++  +WDTAGQE Y  +    Y      L+ + +  P + EN+  +W  E++
Sbjct: 41  DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 100

Query: 70  DHADSNIVIMMIGNKTDLKH------------LRAVATEDAQSYAEREG-LSFIETSALE 116
            H   N+ I+++GNK DL++               V  E+ ++ AE+ G   ++E SA  
Sbjct: 101 -HFCPNVPIILVGNKKDLRNDEHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKT 159

Query: 117 AINVEKAFQT 126
              V + F+ 
Sbjct: 160 KEGVREVFEM 169

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 63.0 bits (153), Expect = 1e-12
 Identities = 47/182 (25%), Positives = 75/182 (41%), Gaps = 42/182 (23%)

Query: 23  IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIG 82
           IWDTAG+E++  + S Y RGA   +L YDV+   + E +      L D A+ + +  ++G
Sbjct: 48  IWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVG 107

Query: 83  NKTDL-------------------KHLRAVATEDAQSYAER--------EGLS------F 109
           NK DL                   +  R V  EDA+++ +R        E LS       
Sbjct: 108 NKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMC 167

Query: 110 IETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKP 169
            ETSA    NV++ F+ + + +  +I  +       A           V   +   +K  
Sbjct: 168 FETSAKTGYNVDELFEYLFNLVLPLILAQRAE----ANRTQGT-----VNLPNPKRSKSK 218

Query: 170 CC 171
           CC
Sbjct: 219 CC 220

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 60.6 bits (147), Expect = 6e-12
 Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 11/124 (8%)

Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
           D  V+G  ++  +WDTAGQE +  + S  Y      +L + V  P + ENV S+WL E+R
Sbjct: 40  DIFVDGLAVELSLWDTAGQEEFDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIR 99

Query: 70  DHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLS---------FIETSALEAINV 120
            H    + ++++  K DL+  R        + +  EGL+         ++E SA     V
Sbjct: 100 HHCPG-VKLVLVALKCDLREPRNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGV 158

Query: 121 EKAF 124
            +AF
Sbjct: 159 NEAF 162

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 60.2 bits (146), Expect = 7e-12
 Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 15/125 (12%)

Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHA 72
           V+G+ +   +WDTAGQE Y  +    Y      L+ + +  P +FENV  +W  E+R H 
Sbjct: 44  VDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 103

Query: 73  DSNIVIMMIGNKTDL------------KHLRAVATEDAQSYA-EREGLSFIETSALEAIN 119
             N  I+++G K DL            K L  +      + A E   + ++E SAL    
Sbjct: 104 -PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 162

Query: 120 VEKAF 124
           ++  F
Sbjct: 163 LKTVF 167

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 56.6 bits (137), Expect = 4e-11
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 4/77 (5%)

Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSR---WLKEL 68
            +V+G T    IWD  G+E  +     + + A   LLVYD+T   +   VSR   WL  L
Sbjct: 41  LEVDGDTGLLNIWDFGGREELKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNL 100

Query: 69  RDHADSNIVIMMIGNKT 85
           R      I ++++GNK 
Sbjct: 101 RK-LGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 57.1 bits (138), Expect = 1e-10
 Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 13/127 (10%)

Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELR 69
           D +V+G+ ++  +WDTAGQE Y  +    Y  A   L+ + +  P + ENV  +W++E+R
Sbjct: 41  DCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVR 100

Query: 70  DHADSNIVIMMIGNKTDLK----------HLRAVATEDAQSYAEREGL-SFIETSALEAI 118
            +   N+ ++++G K DL+              V  + A+  A   G   ++E SAL   
Sbjct: 101 RYC-PNVPVILVGLKKDLRQEAVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGE 159

Query: 119 NVEKAFQ 125
            V+  F+
Sbjct: 160 GVDDVFE 166

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 56.2 bits (135), Expect = 3e-10
 Identities = 33/125 (26%), Positives = 63/125 (50%), Gaps = 15/125 (12%)

Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHA 72
           V+GRT+   +WDTAGQE Y  + +  Y      ++ + +  P+++ENV  +W  E+  H 
Sbjct: 46  VDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC 105

Query: 73  DSNIVIMMIGNKTDLKH------------LRAVATEDAQSYAEREG-LSFIETSALEAIN 119
             N+ I+++G K DL++               +  +   + A++   + ++E SAL    
Sbjct: 106 -PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDG 164

Query: 120 VEKAF 124
           V++ F
Sbjct: 165 VKEVF 169

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 54.7 bits (132), Expect = 8e-10
 Identities = 33/130 (25%), Positives = 67/130 (51%), Gaps = 16/130 (12%)

Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRD 70
           F+V+ + I+  +WDT+G   Y  +    Y  +   L+ +D+++P T ++V  +W  E+R+
Sbjct: 42  FEVDKQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVRE 101

Query: 71  HADSNIVIMMIGNKTDLKHLRAVATEDAQ------SY------AEREG-LSFIETSALEA 117
               N  ++++G K+DL+   +  TE +       S+      A++ G  +++E SA  +
Sbjct: 102 FC-PNTPVLLVGCKSDLRTDLSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTS 160

Query: 118 IN-VEKAFQT 126
            N V   F+ 
Sbjct: 161 ENSVRDVFEM 170

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 52.7 bits (127), Expect = 4e-09
 Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 13/122 (10%)

Query: 15  EGRTIKAQIWDTAGQERYRA-----ITS-AYYRGALGALLVYDVTKPTTFENVSRWLKEL 68
           E + I+  +WD  GQE Y A     +TS + Y      LLV+D+        V  WL+++
Sbjct: 47  ERKKIRLNVWDFGGQEIYHATHQFFLTSRSLY------LLVFDLRTGDEVSRVPYWLRQI 100

Query: 69  RDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTIL 128
           +        ++++G   D      +  +                S      + +  + I 
Sbjct: 101 KAFG-GVSPVILVGTHIDESCDEDILKKALNKKFPAIINDIHFVSCKNGKGIAELKKAIA 159

Query: 129 SE 130
            E
Sbjct: 160 KE 161

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 52.6 bits (127), Expect = 4e-09
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 1/83 (1%)

Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           VE + +K  +WD  GQ++ R +   YY    G + V D +     E     L +L +  +
Sbjct: 38  VEYKNVKFTVWDVGGQDKIRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEE 97

Query: 74  -SNIVIMMIGNKTDLKHLRAVAT 95
                ++++ NK DL      + 
Sbjct: 98  LKGAPLLILANKQDLPGALTESE 120

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 32/110 (29%), Positives = 58/110 (52%), Gaps = 1/110 (0%)

Query: 23  IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRD-HADSNIVIMMI 81
           ++D   QE    +  +  +     ++VY VT  ++FE  S    +LR      +I I+++
Sbjct: 53  VYDHWEQEDGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPIILV 112

Query: 82  GNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           GNK+DL   R V+ ++ ++ A      FIETSA    NV++ F+ I+ ++
Sbjct: 113 GNKSDLVRSREVSVQEGRACAVVFDCKFIETSAALQHNVDELFEGIVRQV 162

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 6/107 (5%)

Query: 23  IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHADSNIVIMMI 81
           I DT+ + + RA  +A  R A    LVY V +P+T E + ++WL  +R      + I+++
Sbjct: 53  IVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-KVPIILV 111

Query: 82  GNKTDLKHLRAVAT-EDAQSY---AEREGLSFIETSALEAINVEKAF 124
           GNK+DL+   + A  E+         RE  + +E SA   INV + F
Sbjct: 112 GNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVF 158

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 48.5 bits (115), Expect = 1e-07
 Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 15/122 (12%)

Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRD 70
           F+++ + I+  +WDT+G   Y  +    Y  +   L+ +D+++P T ++V  +W  E+++
Sbjct: 46  FEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE 105

Query: 71  HADSNIVIMMIGNKTDLK-----------HLRAVATEDAQSYAERE--GLSFIETSALEA 117
               N  ++++G K+DL+           H +   + D  +   ++    ++IE SAL++
Sbjct: 106 FC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQS 164

Query: 118 IN 119
            N
Sbjct: 165 EN 166

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 47.6 bits (113), Expect = 3e-07
 Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 15/116 (12%)

Query: 23  IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHADSNIVIMMI 81
           ++DTAGQE Y  +    Y      L+ + V  P++FENV  +W+ E+  H       +++
Sbjct: 53  LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 111

Query: 82  GNKTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF 124
           G + DL+              + +  E  +  A + + + ++E SAL    ++  F
Sbjct: 112 GTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVF 167

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 47.3 bits (112), Expect = 4e-07
 Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 19/131 (14%)

Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHA 72
           V G+     ++DTAGQE Y  +    Y      L+ + V  P +F+NV   W+ EL+++A
Sbjct: 43  VGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA 102

Query: 73  DSNIVIMMIGNKTDLK----------HL--RAVATEDAQSYAEREGLS-FIETSALEAIN 119
             N+  ++IG + DL+           +  + +  E  Q  A+  G   ++E SAL    
Sbjct: 103 -PNVPYLLIGTQIDLRDDPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSAL---- 157

Query: 120 VEKAFQTILSE 130
            +K  +T+  E
Sbjct: 158 TQKGLKTVFDE 168

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 6/111 (5%)

Query: 19  IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDHADSNIV 77
            +   WD  GQE  R++   YY  + G + V D T    F       ++ + + A   + 
Sbjct: 51  ARLMFWDLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVP 110

Query: 78  IMMIGNKTDLKHLRAVAT-----EDAQSYAEREGLSFIETSALEAINVEKA 123
           ++++ NK DL    +VA      +D  +   R        SALE   VE+ 
Sbjct: 111 LLVLANKQDLPDALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEG 161

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 10/93 (10%)

Query: 47  LLVYDVTKPTTFENVSRWLKELRD---------HADSNIVIMMIGNKTDLKHLRAVATED 97
           +LV+ +    +FE V R  +++ +           +  I +++ GNK D    R V  ++
Sbjct: 76  ILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDE 135

Query: 98  AQSY-AEREGLSFIETSALEAINVEKAFQTILS 129
            +      E  ++ E SA +  N+++ F+ + S
Sbjct: 136 VEQLVGGDENCAYFEVSAKKNSNLDEMFRALFS 168

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 45.4 bits (107), Expect = 3e-06
 Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFEN-VSRWLKELRD 70
            + E + ++  +WDT+G   Y  +    Y  +   LL +D+++P  F++ + +W  E+ D
Sbjct: 54  LETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILD 113

Query: 71  HADSNIVIMMIGNKTDLK 88
           +   +  I++IG KTDL+
Sbjct: 114 YC-PSTRILLIGCKTDLR 130

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 8/108 (7%)

Query: 18  TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH-ADSNI 76
           TIK  +WD  GQ R+R++   Y RG    + V D       E     L +L +  +   I
Sbjct: 45  TIK--VWDLGGQPRFRSMWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGI 102

Query: 77  VIMMIGNKTDLK-HLRA---VATEDAQSYAEREGLSFIETSALEAINV 120
            ++++GNK DL   L     +   + +S  +RE +S    SA E  N+
Sbjct: 103 PLLVLGNKNDLPGALSVDELIEQMNLKSITDRE-VSCYSISAKEKTNI 149

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           ++  + I+  +WD  GQE  R+  + YY      +LV D T           L ++  H 
Sbjct: 53  EIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHE 112

Query: 73  D-SNIVIMMIGNKTDLK 88
           D    V++++ NK DLK
Sbjct: 113 DLRKAVLLVLANKQDLK 129

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 7/112 (6%)

Query: 20  KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM 79
              ++ T GQER++ +     RGA+GA+++ D ++P TF      +  L       +V+ 
Sbjct: 69  GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAE-EIIDFLTSRNPIPVVVA 127

Query: 80  MIGNKTDLKHLRAVATEDAQSYAEREGLSF--IETSALEAINVEKAFQTILS 129
           +  NK DL        E  +   + E LS   IE  A E          +L 
Sbjct: 128 I--NKQDLFDALPP--EKIREALKLELLSVPVIEIDATEGEGARDQLDVLLL 175

Length = 187

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 29/128 (22%)

Query: 15  EGRTIKAQIWDTAGQ----ERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRD 70
           E +T   ++WD  G     E  ++  + +Y    G + V+D+T   + +N+ RW  E  +
Sbjct: 50  EEKTFYVELWDVGGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEALN 109

Query: 71  H-------------------ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIE 111
                               A + + +++IG K D         E  +++         E
Sbjct: 110 RDTFPAGLLVTNGDYDSEQFAGNPVPLLVIGTKLD------QIPEAKRNWVLTRTAFLSE 163

Query: 112 TSALEAIN 119
               E IN
Sbjct: 164 DFNAEEIN 171

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 41.5 bits (97), Expect = 6e-05
 Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 6/90 (6%)

Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRD 70
           F+++   I+  +WDT+G   Y  +    Y  +   L+ +D+++P T ++V  +W  E ++
Sbjct: 42  FEIDKHRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQE 101

Query: 71  HADSNIVIMMIGNK----TDLKHLRAVATE 96
               N  ++++G K    TDL  LR ++ +
Sbjct: 102 FC-PNAKLVLVGCKLDMRTDLSTLRELSKQ 130

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 41.4 bits (97), Expect = 9e-05
 Identities = 41/175 (23%), Positives = 72/175 (41%), Gaps = 50/175 (28%)

Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRD 70
           DF VE       +WD +G ERY+   S +Y    G + V+D+++  T  ++ +W  E+  
Sbjct: 82  DFFVE-------LWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAA 134

Query: 71  HADSN------------IVIMMIGNKTDLKHLRAVATED------------AQSYAEREG 106
               +            +  ++IGNK D      +A ++            A+ + E++G
Sbjct: 135 TGTFSAPLGSGGPGGLPVPYIVIGNKAD------IAPKEGTRGSSGNLVDAARQWVEKQG 188

Query: 107 L-----------SFIETSALEAINVEKAF-QTILSEIYR-IISKKSLSSGEPAPS 148
           L           SF     L A   E  + +  L + +R +I ++  S   PAPS
Sbjct: 189 LLPSSEELPLTESFPGNGGLIAAAKEARYDKEALIKFFRMLIRRRYFSDELPAPS 243

Length = 334

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 11/80 (13%)

Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTF----ENVSRWL--KE 67
           V  + I   +WD  GQ++ R +   YY    G + V D           E + R L   E
Sbjct: 52  VTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDE 111

Query: 68  LRDHADSNIVIMMIGNKTDL 87
           LRD      VI++  NK DL
Sbjct: 112 LRD-----AVILVFANKQDL 126

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 14/86 (16%)

Query: 12  FQVEG---RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWL--- 65
           F VE    + +K  +WD  GQ++ R +   YY G  G + V D       +   + L   
Sbjct: 43  FNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRI 102

Query: 66  ---KELRDHADSNIVIMMIGNKTDLK 88
              +E+RD      ++++  NK DL 
Sbjct: 103 INDREMRD-----ALLLVFANKQDLP 123

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 8/89 (8%)

Query: 3   QPRLGKLCDFQVEG---RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFE 59
            P +G    F VE    + +K  +WD  GQE  R +   Y+      + V D       E
Sbjct: 43  IPTIG----FNVETVTYKNVKFTVWDVGGQESLRPLWRNYFPNTDAVIFVVDSADRDRIE 98

Query: 60  NVSRWLKE-LRDHADSNIVIMMIGNKTDL 87
                L   L +   ++  ++++ NK DL
Sbjct: 99  EAKEELHALLNEEELADAPLLILANKQDL 127

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 3/101 (2%)

Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWL-KELRDHA 72
           VE + +K  +WD  GQ++ R +   YY+   G + V D        +    L + L +  
Sbjct: 56  VEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDE 115

Query: 73  DSNIVIMMIGNKTDLKHLRAVA--TEDAQSYAEREGLSFIE 111
             + V+++  NK DL +  +    TE    ++ R+   +I+
Sbjct: 116 LRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQ 156

Length = 182

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 9/83 (10%)

Query: 12  FQVEGRTIKAQ------IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWL 65
           F VE   ++ +      +WD  GQE+ R +   Y     G + V D +     +   + L
Sbjct: 33  FNVE--MLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKEL 90

Query: 66  KE-LRDHADSNIVIMMIGNKTDL 87
           K  L++     + ++++ NK DL
Sbjct: 91  KHILKNEHIKGVPVVLLANKQDL 113

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|236468 PRK09330, PRK09330, cell division protein FtsZ; Validated

 Score = 37.8 bits (89), Expect = 0.001
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 6/41 (14%)

Query: 44  LGALLVYDVTKPTTFENVSRW------LKELRDHADSNIVI 78
           LG L V  VTKP +FE   R       ++ELR H D+ IVI
Sbjct: 126 LGILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVI 166

Length = 384

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 36.3 bits (84), Expect = 0.003
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 16  GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSN 75
            + +    WD  GQE+ R +  +Y R   G + V D       E     L ++   +++ 
Sbjct: 49  AKGVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQ 108

Query: 76  IV-IMMIGNKTDL 87
            V ++++ NK DL
Sbjct: 109 GVPVLVLANKQDL 121

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 35.9 bits (83), Expect = 0.004
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 11/94 (11%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
             +   +    +D +GQ +YR +   YY+   G + V D +           L+ L +H 
Sbjct: 39  SFKKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHP 98

Query: 73  D---SNIVIMMIGNKTDLKHLRAVATEDAQSYAE 103
           D     I I+   NK DL         DA +  +
Sbjct: 99  DIKHRRIPILFYANKMDL--------PDALTAVK 124

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	174
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.98
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.98
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.97
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.97
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.97
PTZ00099	176	rab6; Provisional	99.97
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.97
PLN03110	216	Rab GTPase; Provisional	99.97
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.97
KOG0394	210	consensus Ras-related GTPase [General function pre	99.97
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.97
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.96
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.96
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.96
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.96
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.96
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.96
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.96
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.96
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.96
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.96
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.96
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.95
PLN03108	210	Rab family protein; Provisional	99.95
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.95
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.95
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.95
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.95
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.95
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.95
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.95
PTZ00369	189	Ras-like protein; Provisional	99.95
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.95
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.95
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.95
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.95
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.94
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.94
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.94
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.94
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.94
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.94
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.94
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.94
PLN03118	211	Rab family protein; Provisional	99.94
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.94
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.94
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.94
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.94
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.94
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.94
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.94
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.94
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.94
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.93
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.93
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.93
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.93
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.93
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.93
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.93
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.93
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.93
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.93
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.93
KOG0395	196	consensus Ras-related GTPase [General function pre	99.92
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.92
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.92
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.92
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.92
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.92
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.92
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.92
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.92
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.92
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.92
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.91
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.91
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.91
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.91
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.91
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.91
PLN00223	181	ADP-ribosylation factor; Provisional	99.9
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.9
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.9
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.9
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.9
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.9
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.9
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.89
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.89
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.89
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.89
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.89
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.89
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.89
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.89
PTZ00133	182	ADP-ribosylation factor; Provisional	99.88
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.88
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.88
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.88
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.88
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.87
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.87
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.86
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.86
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.86
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.85
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.85
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.84
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.84
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.84
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.84
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.84
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.83
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.83
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.83
PLN00023	334	GTP-binding protein; Provisional	99.82
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.82
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.82
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.81
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.79
PRK12299	335	obgE GTPase CgtA; Reviewed	99.79
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.79
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.78
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.77
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.77
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.75
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.75
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.74
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.74
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.74
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.73
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.73
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.72
KOG1673	205	consensus Ras GTPases [General function prediction	99.72
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.71
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.71
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.69
COG1100	219	GTPase SAR1 and related small G proteins [General	99.69
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.68
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.68
PRK04213	201	GTP-binding protein; Provisional	99.68
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.67
PRK12297	424	obgE GTPase CgtA; Reviewed	99.67
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.67
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.66
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.66
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.66
PRK03003	472	GTP-binding protein Der; Reviewed	99.65
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.65
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.65
PRK03003	472	GTP-binding protein Der; Reviewed	99.65
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.64
PRK15494	339	era GTPase Era; Provisional	99.63
PRK12296	500	obgE GTPase CgtA; Reviewed	99.62
PRK05433	600	GTP-binding protein LepA; Provisional	99.61
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.61
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.61
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.61
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.6
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.6
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.59
PRK11058	426	GTPase HflX; Provisional	99.58
PRK12298	390	obgE GTPase CgtA; Reviewed	99.58
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.58
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.57
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.57
CHL00189	742	infB translation initiation factor 2; Provisional	99.56
PRK00093	435	GTP-binding protein Der; Reviewed	99.56
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.55
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.55
COG2229	187	Predicted GTPase [General function prediction only	99.55
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.54
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.54
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.54
cd00881	189	GTP_translation_factor GTP translation factor fami	99.54
PRK05306	787	infB translation initiation factor IF-2; Validated	99.53
PRK00089	292	era GTPase Era; Reviewed	99.52
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.5
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.5
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.5
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.49
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.49
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.48
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.48
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.46
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.46
COG1159	298	Era GTPase [General function prediction only]	99.45
COG1160	444	Predicted GTPases [General function prediction onl	99.45
PRK00093	435	GTP-binding protein Der; Reviewed	99.45
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.45
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.44
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.44
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.44
PRK10218	607	GTP-binding protein; Provisional	99.42
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.41
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.4
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.37
PRK12317	425	elongation factor 1-alpha; Reviewed	99.37
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.37
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.36
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.35
COG0486	454	ThdF Predicted GTPase [General function prediction	99.34
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.34
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.34
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.33
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.33
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.32
COG1160	444	Predicted GTPases [General function prediction onl	99.32
PRK04004	586	translation initiation factor IF-2; Validated	99.31
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.3
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.29
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.27
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.25
PRK14845	1049	translation initiation factor IF-2; Provisional	99.24
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.24
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.22
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.2
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.2
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.18
PRK12736	394	elongation factor Tu; Reviewed	99.18
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.16
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.16
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.15
PLN00043	447	elongation factor 1-alpha; Provisional	99.15
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.15
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.14
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.14
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.14
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.11
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.1
PRK12735	396	elongation factor Tu; Reviewed	99.1
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.09
COG0536	369	Obg Predicted GTPase [General function prediction	99.08
PRK09866	741	hypothetical protein; Provisional	99.07
PRK12289	352	GTPase RsgA; Reviewed	99.07
KOG1145	683	consensus Mitochondrial translation initiation fac	99.06
PRK00098	298	GTPase RsgA; Reviewed	99.06
COG1084	346	Predicted GTPase [General function prediction only	99.04
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.03
PRK13351	687	elongation factor G; Reviewed	99.03
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.02
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	99.01
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.0
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	98.99
PRK12740	668	elongation factor G; Reviewed	98.98
COG2262	411	HflX GTPases [General function prediction only]	98.98
PRK12288	347	GTPase RsgA; Reviewed	98.97
PRK13768	253	GTPase; Provisional	98.96
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	98.95
CHL00071	409	tufA elongation factor Tu	98.95
PTZ00141	446	elongation factor 1- alpha; Provisional	98.93
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	98.92
PRK00049	396	elongation factor Tu; Reviewed	98.9
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	98.89
PLN03127	447	Elongation factor Tu; Provisional	98.87
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.85
PLN03126	478	Elongation factor Tu; Provisional	98.85
TIGR00503	527	prfC peptide chain release factor 3. This translat	98.84
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.81
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	98.81
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	98.8
COG0218	200	Predicted GTPase [General function prediction only	98.8
PRK12739	691	elongation factor G; Reviewed	98.75
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	98.75
KOG0090	238	consensus Signal recognition particle receptor, be	98.75
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	98.72
PF09439	181	SRPRB: Signal recognition particle receptor beta s	98.71
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.69
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.64
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	98.63
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.61
PRK13796	365	GTPase YqeH; Provisional	98.59
COG1163	365	DRG Predicted GTPase [General function prediction	98.55
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	98.55
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.54
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.52
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	98.5
PRK09602	396	translation-associated GTPase; Reviewed	98.49
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.47
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.46
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	98.45
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.44
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.43
PRK01889	356	GTPase RsgA; Reviewed	98.43
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	98.41
PRK00007	693	elongation factor G; Reviewed	98.4
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.39
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	98.37
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.37
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	98.36
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.35
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.35
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.29
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	98.29
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.28
COG1162	301	Predicted GTPases [General function prediction onl	98.25
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.25
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.24
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.24
PRK07560	731	elongation factor EF-2; Reviewed	98.13
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	98.13
KOG3886	295	consensus GTP-binding protein [Signal transduction	98.12
PLN00116	843	translation elongation factor EF-2 subunit; Provis	98.12
COG3596	296	Predicted GTPase [General function prediction only	98.05
PTZ00416	836	elongation factor 2; Provisional	98.04
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.02
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	98.02
PTZ00258	390	GTP-binding protein; Provisional	97.95
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	97.93
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	97.91
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	97.83
KOG0461	522	consensus Selenocysteine-specific elongation facto	97.78
COG0050	394	TufB GTPases - translation elongation factors [Tra	97.77
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	97.76
COG5258	527	GTPBP1 GTPase [General function prediction only]	97.75
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	97.7
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.68
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	97.68
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	97.63
KOG0465	721	consensus Mitochondrial elongation factor [Transla	97.61
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	97.55
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	97.53
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	97.5
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	97.48
KOG0466	466	consensus Translation initiation factor 2, gamma s	97.44
PRK09601	364	GTP-binding protein YchF; Reviewed	97.39
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	97.38
KOG0460	449	consensus Mitochondrial translation elongation fac	97.38
cd03110	179	Fer4_NifH_child This protein family's function is	97.37
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.28
KOG3887	347	consensus Predicted small GTPase involved in nucle	97.19
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	97.14
KOG0464	753	consensus Elongation factor G [Translation, riboso	97.12
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	97.03
COG1161	322	Predicted GTPases [General function prediction onl	96.99
KOG0467	887	consensus Translation elongation factor 2/ribosome	96.97
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	96.59
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	96.57
KOG1143	591	consensus Predicted translation elongation factor	96.52
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	96.35
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	96.31
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	96.31
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	96.25
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	96.24
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	96.24
KOG2486	320	consensus Predicted GTPase [General function predi	96.09
KOG2484	435	consensus GTPase [General function prediction only	96.02
KOG4273	418	consensus Uncharacterized conserved protein [Funct	95.85
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	95.79
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	95.55
TIGR00064	272	ftsY signal recognition particle-docking protein F	95.55
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	95.23
PRK14974	336	cell division protein FtsY; Provisional	95.19
PHA02518	211	ParA-like protein; Provisional	95.16
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	95.0
KOG2423	572	consensus Nucleolar GTPase [General function predi	94.93
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	94.88
PF09419	168	PGP_phosphatase: Mitochondrial PGP phosphatase; In	94.84
COG4963	366	CpaE Flp pilus assembly protein, ATPase CpaE [Intr	94.83
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	94.61
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	94.59
PRK10416	318	signal recognition particle-docking protein FtsY;	94.58
KOG0410	410	consensus Predicted GTP binding protein [General f	94.38
PF14331	266	ImcF-related_N: ImcF-related N-terminal domain	94.16
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	93.94
cd02036	179	MinD Bacterial cell division requires the formatio	93.66
cd03111	106	CpaE_like This protein family consists of proteins	93.64
COG1149	284	MinD superfamily P-loop ATPase containing an inser	93.59
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	93.28
TIGR03371	246	cellulose_yhjQ cellulose synthase operon protein Y	93.27
PRK13505	557	formate--tetrahydrofolate ligase; Provisional	92.79
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	92.42
cd02037	169	MRP-like MRP (Multiple Resistance and pH adaptatio	92.06
TIGR00959	428	ffh signal recognition particle protein. This mode	92.01
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	92.01
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	91.97
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	91.89
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	91.79
cd02117	212	NifH_like This family contains the NifH (iron prot	91.75
TIGR01968	261	minD_bact septum site-determining protein MinD. Th	91.34
COG0523	323	Putative GTPases (G3E family) [General function pr	90.49
cd03112	158	CobW_like The function of this protein family is u	90.46
PRK00771	437	signal recognition particle protein Srp54; Provisi	90.41
PRK13185	270	chlL protochlorophyllide reductase iron-sulfur ATP	90.27
PRK13849	231	putative crown gall tumor protein VirC1; Provision	90.04
cd03114	148	ArgK-like The function of this protein family is u	89.28
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	89.03
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	88.94
cd03115	173	SRP The signal recognition particle (SRP) mediates	88.8
COG3523	1188	IcmF Type VI protein secretion system component Va	88.79
PF01656	195	CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai	88.42
COG5019	373	CDC3 Septin family protein [Cell division and chro	87.9
PRK10818	270	cell division inhibitor MinD; Provisional	87.87
CHL00175	281	minD septum-site determining protein; Validated	87.87
PRK10867	433	signal recognition particle protein; Provisional	87.63
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	87.17
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	86.66
TIGR02016	296	BchX chlorophyllide reductase iron protein subunit	86.29
cd02032	267	Bchl_like This family of proteins contains bchL an	85.85
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	85.51
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	85.11
PRK11537	318	putative GTP-binding protein YjiA; Provisional	84.44
COG0012	372	Predicted GTPase, probable translation factor [Tra	84.43
cd02033	329	BchX Chlorophyllide reductase converts chlorophyll	84.32
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	83.85
KOG0780	483	consensus Signal recognition particle, subunit Srp	83.78
TIGR01281	268	DPOR_bchL light-independent protochlorophyllide re	83.75
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	83.09
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	83.06
COG0012	372	Predicted GTPase, probable translation factor [Tra	82.49
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	82.28
TIGR01007	204	eps_fam capsular exopolysaccharide family. This mo	81.75
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	81.28
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	80.96
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	80.63
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	80.14

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.6e-36  Score=212.47  Aligned_cols=162  Identities=42%  Similarity=0.735  Sum_probs=140.9

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      .|+|   +.+++.++|+.+.|++|||+||++|+.....||++|+|+|||||+++.+||+.++.|+.++..+...++|.++
T Consensus        40 sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lL  119 (205)
T KOG0084|consen   40 STIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLL  119 (205)
T ss_pred             ceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEE
Confidence            4566   6668889999999999999999999999999999999999999999999999999999999999988899999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCc-EEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCeeEec
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLS-FIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVG  159 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (174)
                      ||||+|+.+.+.++.+++++|+..++++ ++++||+++.|++++|..|...+..++........       .+..+....
T Consensus       120 VGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~~~~~~~~~-------~~~~~~ql~  192 (205)
T KOG0084|consen  120 VGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQRKGLHVKWST-------ASLESVQLK  192 (205)
T ss_pred             EeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHHhcccCCCCCc-------CCCCceeeC
Confidence            9999999999999999999999999999 99999999999999999999999998876654443       122222223


Q ss_pred             CCCCCCCCCCCCC
Q 043745          160 GASEANTKKPCCS  172 (174)
Q Consensus       160 ~~~~~~~~~~c~~  172 (174)
                      +.|...++++||+
T Consensus       193 ~~p~~~~~~~~C~  205 (205)
T KOG0084|consen  193 GTPVKKSNGGCCE  205 (205)
T ss_pred             CCCcccccCCCCC
Confidence            3456666677875

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3e-35  Score=207.09  Aligned_cols=137  Identities=45%  Similarity=0.732  Sum_probs=129.2

Q ss_pred             CCCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE
Q 043745            3 QPRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM   79 (174)
Q Consensus         3 ~pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii   79 (174)
                      .||+|   .++++.+++..+.+.+|||+|+++|.++.+.||++|+++|+|||+++.+||..++.|+.++.+..++++-|.
T Consensus        35 e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~via  114 (200)
T KOG0092|consen   35 EPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIA  114 (200)
T ss_pred             ccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEE
Confidence            48999   788889999999999999999999999999999999999999999999999999999999988887788899


Q ss_pred             EEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q 043745           80 MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKS  139 (174)
Q Consensus        80 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~  139 (174)
                      |+|||+||.+.+++..++++.+|+..|+.++++||+++.|++++|..|.+.++.......
T Consensus       115 lvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~~~  174 (200)
T KOG0092|consen  115 LVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLPCSDPQER  174 (200)
T ss_pred             EecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHHhccCcccccc
Confidence            999999999999999999999999999999999999999999999999999888765554

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-33  Score=202.06  Aligned_cols=132  Identities=44%  Similarity=0.829  Sum_probs=126.2

Q ss_pred             ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745            8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL   87 (174)
Q Consensus         8 ~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl   87 (174)
                      +.+++.+++..+.+++|||+||++|+.+.+.||++|+++++|||+++..||+++..|+..|..+.+.++|++|||||+|+
T Consensus        50 k~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~  129 (207)
T KOG0078|consen   50 KIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDL  129 (207)
T ss_pred             EEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccc
Confidence            66688999999999999999999999999999999999999999999999999999999999999889999999999999


Q ss_pred             CCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q 043745           88 KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKS  139 (174)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~  139 (174)
                      ...|++..+.++.+|.++|+.++|+||++|.||++.|..|++.++.++.+..
T Consensus       130 ~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~k~~~~~  181 (207)
T KOG0078|consen  130 EEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARDILQKLEDAE  181 (207)
T ss_pred             cccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHHhhcchhh
Confidence            9999999999999999999999999999999999999999999998766553

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.4e-34  Score=202.65  Aligned_cols=140  Identities=70%  Similarity=1.115  Sum_probs=130.7

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      +|+|   .+.++.++++.+..+||||+||++|+.....||+++.++++|||++...+|+.+.+|+.+++.+.+.+++++|
T Consensus        45 sTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimL  124 (222)
T KOG0087|consen   45 STIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIML  124 (222)
T ss_pred             cceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence            4555   4457789999999999999999999999999999999999999999999999999999999999988999999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSG  143 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~~~~~  143 (174)
                      |+||+||...+.+..++++.++++.++.++++||..+.|+++.|+.++..|+....++.....
T Consensus       125 vGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs~k~~~~~  187 (222)
T KOG0087|consen  125 VGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVLTEIYKIVSKKQLDEN  187 (222)
T ss_pred             eecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            999999999999999999999999999999999999999999999999999999877765554

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-33  Score=197.50  Aligned_cols=139  Identities=46%  Similarity=0.796  Sum_probs=128.2

Q ss_pred             ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745            8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL   87 (174)
Q Consensus         8 ~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl   87 (174)
                      --+.++++++.+.|++|||+|++.|++..+.||+++-++|+|||++++++|..+..|+..++++..++..|+|++||+||
T Consensus        44 g~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL  123 (216)
T KOG0098|consen   44 GARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDL  123 (216)
T ss_pred             ceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhh
Confidence            34477899999999999999999999999999999999999999999999999999999999997779999999999999


Q ss_pred             CCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 043745           88 KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPA  146 (174)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~~~~~~~~  146 (174)
                      ...++|+.++++.||+++|+.++++||++++|+++.|......|++.....-.-.-.+.
T Consensus       124 ~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta~~Iy~~~q~g~~~~~~~~  182 (216)
T KOG0098|consen  124 EARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTAKEIYRKIQDGVFDDINES  182 (216)
T ss_pred             hccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHHHHHHHHHHhccccccccc
Confidence            99999999999999999999999999999999999999999999998766544433333

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-32  Score=193.93  Aligned_cols=134  Identities=37%  Similarity=0.658  Sum_probs=124.8

Q ss_pred             CCCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC-CCeE
Q 043745            3 QPRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVI   78 (174)
Q Consensus         3 ~pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~pi   78 (174)
                      +||+|   -++++.+.+..++|++|||+||++|+++.+.|++++.++|+|||+++..||+...+|++.++...+. ++-|
T Consensus        52 qATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI  131 (221)
T KOG0094|consen   52 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVII  131 (221)
T ss_pred             cceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEE
Confidence            58888   6778899999999999999999999999999999999999999999999999999999999887774 5889


Q ss_pred             EEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q 043745           79 MMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIIS  136 (174)
Q Consensus        79 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~  136 (174)
                      +|||||.||.+.++++.+++...|++++..|+++||+.|.|++++|..+...+.....
T Consensus       132 ~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~~~  189 (221)
T KOG0094|consen  132 FLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPGMEV  189 (221)
T ss_pred             EEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccCccc
Confidence            9999999999999999999999999999999999999999999999998877766544

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=4.1e-32  Score=186.49  Aligned_cols=168  Identities=37%  Similarity=0.678  Sum_probs=139.5

Q ss_pred             CCCcc---ceeEEEE-CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCC
Q 043745            3 QPRLG---KLCDFQV-EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD--SNI   76 (174)
Q Consensus         3 ~pt~g---~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~   76 (174)
                      .||+|   +.+.+.+ .|..+.+++|||+||++|++....||++.-++++|||++|.+||+.++.|+.+...+..  ..+
T Consensus        38 dptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~  117 (213)
T KOG0091|consen   38 DPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKV  117 (213)
T ss_pred             CCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCee
Confidence            57777   4444444 78899999999999999999999999999999999999999999999999999766654  345


Q ss_pred             eEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCC--CCCCCCCCC
Q 043745           77 VIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEP--APSNIKEGQ  154 (174)
Q Consensus        77 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~~~~~~~--~~~~~~~~~  154 (174)
                      -++||++|.||...++++.+++++++..+|+.++++||++|.|+++.|..+.+.+...+..........  ..++.++|+
T Consensus       118 VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mlaqeIf~~i~qGeik~edgw~gvKSsrpn~  197 (213)
T KOG0091|consen  118 VFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLAQEIFQAIQQGEIKLEDGWGGVKSSRPNQ  197 (213)
T ss_pred             EEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHHHHHHHHHhcCceeeeeccccccccCCCc
Confidence            577899999999999999999999999999999999999999999999999999999987765554433  233344444


Q ss_pred             eeEecCCCCCCCCCCCCC
Q 043745          155 TIVVGGASEANTKKPCCS  172 (174)
Q Consensus       155 ~~~~~~~~~~~~~~~c~~  172 (174)
                        ...+..-...++.|||
T Consensus       198 --i~~s~~~~~P~k~c~C  213 (213)
T KOG0091|consen  198 --IPRSPSRKQPSKPCQC  213 (213)
T ss_pred             --CCCcccccCCCCCCCC
Confidence              3334455667788888

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.98  E-value=1.4e-31  Score=183.17  Aligned_cols=163  Identities=34%  Similarity=0.615  Sum_probs=134.3

Q ss_pred             eeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745            9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus         9 ~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      ++.+.+.+....+++|||+||++|..+.+.||++++++++|||++|++||+.++.|+.+++...+..+-+++|+||+||+
T Consensus        52 ~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLE  131 (218)
T KOG0088|consen   52 NKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLE  131 (218)
T ss_pred             hcccccccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHH
Confidence            34567788889999999999999999999999999999999999999999999999999998888789999999999999


Q ss_pred             CccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCC--CCC-CCCCCeeEecCCCCCC
Q 043745           89 HLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPA--PSN-IKEGQTIVVGGASEAN  165 (174)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~  165 (174)
                      ++++++.+++..+++.-|..|+++||+.+.||.++|+.+...+++.....+...++-+  |+. .+.+.-+- +..+..+
T Consensus       132 eeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt~~MiE~~s~~qr~~~~~s~qpp~t~r~~~~iD-~e~~a~~  210 (218)
T KOG0088|consen  132 EERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLTAKMIEHSSQRQRTRSPLSTQPPSTNRSIRLID-NEAEAER  210 (218)
T ss_pred             HhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHHHHHHHHhhhcccccCCcCCCCCCcccchhccC-CCccccc
Confidence            9999999999999999999999999999999999999999988887655544443222  222 22222222 2224555


Q ss_pred             CCCCCCC
Q 043745          166 TKKPCCS  172 (174)
Q Consensus       166 ~~~~c~~  172 (174)
                      ++++||.
T Consensus       211 sg~~CC~  217 (218)
T KOG0088|consen  211 SGKRCCR  217 (218)
T ss_pred             ccCCccC
Confidence            6666664

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.98  E-value=1.9e-31  Score=180.49  Aligned_cols=153  Identities=41%  Similarity=0.721  Sum_probs=132.9

Q ss_pred             ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745            8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL   87 (174)
Q Consensus         8 ~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl   87 (174)
                      +.+++.++|..+.+++||++|+++|+.+...||++.+++++|||+++.+||.++++|+++++..++ .+|-++|+||.|+
T Consensus        46 kirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~  124 (198)
T KOG0079|consen   46 KIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDD  124 (198)
T ss_pred             EEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCC
Confidence            566788999999999999999999999999999999999999999999999999999999998886 7999999999999


Q ss_pred             CCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCeeEecCCCCCCCC
Q 043745           88 KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTK  167 (174)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (174)
                      ++++.+..++++.|+..+|++.|++||+..+|++..|.-|.+++++..........+.          ...+=++.+.++
T Consensus       125 ~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~qvl~~k~r~~~~~~r~----------~~~~l~~n~~~~  194 (198)
T KOG0079|consen  125 PERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQVLQAKLRESVEQQRA----------DAVSLKDNSKST  194 (198)
T ss_pred             ccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHHHHHHHHhhcHHHHhh----------cceEeccCCCcc
Confidence            9999999999999999999999999999999999999999999988774332222222          222233445566


Q ss_pred             CCCC
Q 043745          168 KPCC  171 (174)
Q Consensus       168 ~~c~  171 (174)
                      ++||
T Consensus       195 ~k~c  198 (198)
T KOG0079|consen  195 KKCC  198 (198)
T ss_pred             ccCC
Confidence            6887

>cd04120 Rab12 Rab12 subfamily

Probab=99.97  E-value=3.7e-30  Score=188.78  Aligned_cols=132  Identities=37%  Similarity=0.746  Sum_probs=119.8

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||+|   ..+.+.+++..+.++||||+|+++|+.++..|++++|++|+|||+++++||+.+..|+..+......++|+++
T Consensus        31 ~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piil  110 (202)
T cd04120          31 SGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLL  110 (202)
T ss_pred             CcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEE
Confidence            6666   4557788999999999999999999999999999999999999999999999999999988776556799999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHh-CCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAERE-GLSFIETSALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                      |+||+||.+.+++..++++++++++ ++.++++||++|.|++++|+++++.+...+
T Consensus       111 VgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~~~~~  166 (202)
T cd04120         111 VGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM  166 (202)
T ss_pred             EEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhC
Confidence            9999999877888899999999885 789999999999999999999999887653

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=4.3e-31  Score=181.03  Aligned_cols=130  Identities=42%  Similarity=0.710  Sum_probs=123.3

Q ss_pred             Ccc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEE
Q 043745            5 RLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMM   80 (174)
Q Consensus         5 t~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piil   80 (174)
                      |+|   +.|.+.++|+++.+-+|||+||++|+.+.+.||++|.++|+|||++.+++|..+..|+.++..+.. +++-.++
T Consensus        43 tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikml  122 (209)
T KOG0080|consen   43 TIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKML  122 (209)
T ss_pred             eeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhh
Confidence            477   888999999999999999999999999999999999999999999999999999999999988876 6778899


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      |+||+|.+..+.++.+++..||+++++-++++||++.+|+...|+.++.+|++-
T Consensus       123 VgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~FeelveKIi~t  176 (209)
T KOG0080|consen  123 VGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEELVEKIIET  176 (209)
T ss_pred             hcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHHHHHhcC
Confidence            999999988899999999999999999999999999999999999999998864

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.5e-30  Score=175.88  Aligned_cols=135  Identities=39%  Similarity=0.716  Sum_probs=126.3

Q ss_pred             Ccc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEE
Q 043745            5 RLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMI   81 (174)
Q Consensus         5 t~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv   81 (174)
                      |+|   +.|++--+.+++.+++|||+|+++|+.+...||++++++|++||++|.+||..+..|...|..+.-.+.|+|++
T Consensus        53 TvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilv  132 (193)
T KOG0093|consen   53 TVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILV  132 (193)
T ss_pred             eeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEE
Confidence            666   66666667788999999999999999999999999999999999999999999999999999888789999999


Q ss_pred             EeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q 043745           82 GNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKS  139 (174)
Q Consensus        82 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~  139 (174)
                      +||+|+..+|.++.+.++.++.++|.++|++||+.+.|++++|+.++..|.+.+.+..
T Consensus       133 gnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~~Ic~kmsesl  190 (193)
T KOG0093|consen  133 GNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVDIICDKMSESL  190 (193)
T ss_pred             ecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHHHHHHHhhhhh
Confidence            9999999999999999999999999999999999999999999999999999886653

>PTZ00099 rab6; Provisional

Probab=99.97  E-value=2.7e-29  Score=180.67  Aligned_cols=133  Identities=32%  Similarity=0.613  Sum_probs=119.9

Q ss_pred             CCCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE
Q 043745            3 QPRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM   79 (174)
Q Consensus         3 ~pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii   79 (174)
                      .||+|   ..+.+.+++..+.+.||||+|+++|..++..+++++|++|+|||++++++|+.+..|+..+......++|++
T Consensus        10 ~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~pii   89 (176)
T PTZ00099         10 QSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIA   89 (176)
T ss_pred             CCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEE
Confidence            48998   456778899999999999999999999999999999999999999999999999999999876554578999


Q ss_pred             EEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745           80 MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus        80 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                      ||+||+||...+.+..+++..++..++..++++||+++.|++++|+++++.+....
T Consensus        90 lVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~  145 (176)
T PTZ00099         90 LVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD  145 (176)
T ss_pred             EEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence            99999999876778888899999988999999999999999999999999876643

>cd04121 Rab40 Rab40 subfamily

Probab=99.97  E-value=3.2e-29  Score=182.12  Aligned_cols=132  Identities=39%  Similarity=0.717  Sum_probs=120.1

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||+|   +++.+.+++..+.++||||+|+++|..++..+++++|++|||||++++++|+.+..|+..+....+ ++|+||
T Consensus        37 ~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~-~~piil  115 (189)
T cd04121          37 YNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP-GVPKIL  115 (189)
T ss_pred             CcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEE
Confidence            4555   455677899999999999999999999999999999999999999999999999999999977654 799999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIIS  136 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~  136 (174)
                      ||||.||...+.++.++++.+++..+++++++||++|.|++++|+++++.+....+
T Consensus       116 VGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~~~~  171 (189)
T cd04121         116 VGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLMRHG  171 (189)
T ss_pred             EEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC
Confidence            99999998878889999999999999999999999999999999999998876544

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>PLN03110 Rab GTPase; Provisional

Probab=99.97  E-value=1.9e-28  Score=181.76  Aligned_cols=167  Identities=69%  Similarity=1.040  Sum_probs=134.0

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||+|   ..+.+.+++..+.++|||++|+++|..++..++++++++|+|||+++.++|+.+..|+..+......++|+++
T Consensus        43 ~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piii  122 (216)
T PLN03110         43 STIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMM  122 (216)
T ss_pred             CceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence            6666   3456778888999999999999999999999999999999999999999999999999998877656799999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCC--CCCCCCCeeEe
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAP--SNIKEGQTIVV  158 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~  158 (174)
                      |+||+|+...+.+..++.+.++...+++++++||+++.|++++|++++..+.+....+.........  ..+..++.+..
T Consensus       123 v~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (216)
T PLN03110        123 AGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKKALAAQEAAANSGLPGQGTTINV  202 (216)
T ss_pred             EEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhccccccccCcccccCcCcCCcccc
Confidence            9999999877788888999999999999999999999999999999999998876544433333222  22222333333


Q ss_pred             cCCCCCCCCCCCC
Q 043745          159 GGASEANTKKPCC  171 (174)
Q Consensus       159 ~~~~~~~~~~~c~  171 (174)
                      ... ....+++||
T Consensus       203 ~~~-~~~~~~~~c  214 (216)
T PLN03110        203 ADT-SGNNKRGCC  214 (216)
T ss_pred             cCc-cCCCCCCCc
Confidence            222 344556665

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.97  E-value=2.2e-28  Score=182.48  Aligned_cols=133  Identities=23%  Similarity=0.463  Sum_probs=117.8

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piil   80 (174)
                      ||+|  ..+.+.+++..+.++||||+|++.|..++..+|+++|++|+|||++++++|+.+ ..|+..+....+ +.|++|
T Consensus        44 pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~~piil  122 (232)
T cd04174          44 PTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP-STRILL  122 (232)
T ss_pred             CceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC-CCCEEE
Confidence            6776  444567899999999999999999999999999999999999999999999985 899999987654 789999


Q ss_pred             EEeCCCCCC------------ccCCCHHHHHHHHHHhCC-cEEEEeccCCC-CHHHHHHHHHHHHHHHHhh
Q 043745           81 IGNKTDLKH------------LRAVATEDAQSYAEREGL-SFIETSALEAI-NVEKAFQTILSEIYRIISK  137 (174)
Q Consensus        81 v~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~-~i~~v~~~l~~~i~~~~~~  137 (174)
                      |+||+||.+            .+.++.+++++++.++++ .|++|||++|. |++++|..++..+++....
T Consensus       123 VgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~~~~  193 (232)
T cd04174         123 IGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNKLSP  193 (232)
T ss_pred             EEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHhccc
Confidence            999999964            257889999999999998 69999999998 8999999999998875433

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.97  E-value=3.8e-29  Score=174.95  Aligned_cols=134  Identities=39%  Similarity=0.676  Sum_probs=121.9

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC----CCC
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD----SNI   76 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~   76 (174)
                      .|+|   -+|++.++++.+.+++|||+||++|.++...+|+++|.+++|||+.+.+||+.+..|..++..+..    ...
T Consensus        40 aTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~F  119 (210)
T KOG0394|consen   40 ATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETF  119 (210)
T ss_pred             cccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcc
Confidence            4666   677899999999999999999999999999999999999999999999999999999999865543    569


Q ss_pred             eEEEEEeCCCCCCc--cCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q 043745           77 VIMMIGNKTDLKHL--RAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEIYRIISK  137 (174)
Q Consensus        77 piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~  137 (174)
                      |+||+|||+|+...  ++++...++.|+...| ++|||+||+...|+++.|+.+.+.++.....
T Consensus       120 PFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  120 PFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALANEDR  183 (210)
T ss_pred             cEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhccch
Confidence            99999999999763  7899999999998876 8999999999999999999999999987654

>cd04126 Rab20 Rab20 subfamily

Probab=99.97  E-value=9.4e-29  Score=183.39  Aligned_cols=146  Identities=29%  Similarity=0.522  Sum_probs=120.4

Q ss_pred             eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC-------
Q 043745           17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH-------   89 (174)
Q Consensus        17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-------   89 (174)
                      ..+.+.||||+|++.|..++..+++++|++|+|||++++++|+.+..|+..+......++|+|||+||+||.+       
T Consensus        42 ~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~  121 (220)
T cd04126          42 GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQ  121 (220)
T ss_pred             eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccc
Confidence            4577999999999999999999999999999999999999999999888877665445799999999999965       


Q ss_pred             ------------ccCCCHHHHHHHHHHhC--------------CcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q 043745           90 ------------LRAVATEDAQSYAEREG--------------LSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSG  143 (174)
Q Consensus        90 ------------~~~~~~~~~~~~~~~~~--------------~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~~~~~  143 (174)
                                  .+.+..++++.++++.+              ++|+++||++|.|++++|..+++.++....+...+.+
T Consensus       122 ~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~  201 (220)
T cd04126         122 EKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEAN  201 (220)
T ss_pred             cccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhh
Confidence                        57888999999999876              6899999999999999999999999987766643211


Q ss_pred             CCCCCCCCCCCeeEecCCCCCCCCCCCC
Q 043745          144 EPAPSNIKEGQTIVVGGASEANTKKPCC  171 (174)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~  171 (174)
                             ....  .........++++||
T Consensus       202 -------~~~~--~~~~~~~~~~~~~~~  220 (220)
T cd04126         202 -------RTQG--TVNLPNPKRSKSKCC  220 (220)
T ss_pred             -------hhhc--cccCCCcccCCCCCC
Confidence                   1111  112334666777887

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.96  E-value=6.2e-28  Score=177.03  Aligned_cols=162  Identities=33%  Similarity=0.611  Sum_probs=128.3

Q ss_pred             CCcc---ceeEEEEC-CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc----CCC
Q 043745            4 PRLG---KLCDFQVE-GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA----DSN   75 (174)
Q Consensus         4 pt~g---~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~----~~~   75 (174)
                      ||+|   ..+.+.++ +..+.+.||||+|+++|..++..+++++|++|+|||++++++|+.+..|+..+....    ..+
T Consensus        31 ~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~  110 (201)
T cd04107          31 ATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEP  110 (201)
T ss_pred             CceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCC
Confidence            5665   23455666 788999999999999999999999999999999999999999999999998876532    247


Q ss_pred             CeEEEEEeCCCCCCccCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCC
Q 043745           76 IVIMMIGNKTDLKHLRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQ  154 (174)
Q Consensus        76 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~  154 (174)
                      +|++||+||+|+.+.+.+..+++.++++..+ ..++++||+++.|++++|+++++.+...........+...      ..
T Consensus       111 ~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~~~~~~~~~~~~~------~~  184 (201)
T cd04107         111 IPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNILANDKNLQQAETPED------GS  184 (201)
T ss_pred             CcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhchhhHhhcCCCc------cc
Confidence            8999999999998666788899999999998 6899999999999999999999998876443332222211      22


Q ss_pred             eeEecCCCCCCCCCCCC
Q 043745          155 TIVVGGASEANTKKPCC  171 (174)
Q Consensus       155 ~~~~~~~~~~~~~~~c~  171 (174)
                      .+.....+....+++||
T Consensus       185 ~~~~~~~~~~~~~~~~~  201 (201)
T cd04107         185 VIDLKQTTTKKKSKGCC  201 (201)
T ss_pred             ccccccceeccccCCCC
Confidence            23333445555666787

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04110 Rab35 Rab35 subfamily

Probab=99.96  E-value=1.5e-27  Score=174.74  Aligned_cols=160  Identities=40%  Similarity=0.711  Sum_probs=128.6

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||+|   ..+++.+++..+.+.|||++|++.|..++..+++++|++++|||++++++|+.+..|+..+..... ..|+++
T Consensus        37 ~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~piiv  115 (199)
T cd04110          37 TTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD-DVCKVL  115 (199)
T ss_pred             ccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEE
Confidence            5555   234556678888999999999999999999999999999999999999999999999999876553 789999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCeeEecC
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGG  160 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (174)
                      |+||+|+.+.+.+..++...++..++++++++||+++.|++++|+++.+.++....+...............+       
T Consensus       116 VgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------  188 (199)
T cd04110         116 VGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVKL-------  188 (199)
T ss_pred             EEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHHHHhhhccCcccccCCccccCcc-------
Confidence            9999999877777888899999999999999999999999999999999998765444322222222222222       


Q ss_pred             CCCCCCCCCCC
Q 043745          161 ASEANTKKPCC  171 (174)
Q Consensus       161 ~~~~~~~~~c~  171 (174)
                      .-.++++++||
T Consensus       189 ~~~~~~~~~~~  199 (199)
T cd04110         189 PKNSKRKKRCC  199 (199)
T ss_pred             chhccccccCC
Confidence            23456778888

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04144 Ras2 Ras2 subfamily

Probab=99.96  E-value=1.2e-27  Score=174.02  Aligned_cols=128  Identities=36%  Similarity=0.564  Sum_probs=113.8

Q ss_pred             eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCeEEEEEeCCC
Q 043745           10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD---SNIVIMMIGNKTD   86 (174)
Q Consensus        10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~nK~D   86 (174)
                      +.+.+++..+.++||||+|+++|..++..+++++|++|+|||+++.++|+.+..|+..+.....   .+.|+++|+||+|
T Consensus        38 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~D  117 (190)
T cd04144          38 KQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCD  117 (190)
T ss_pred             EEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChh
Confidence            3556788889999999999999999999999999999999999999999999999988866542   4689999999999


Q ss_pred             CCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q 043745           87 LKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISK  137 (174)
Q Consensus        87 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~  137 (174)
                      +...+.+...+..+++..++++++++||+++.|++++|+++++.+......
T Consensus       118 l~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~~~~  168 (190)
T cd04144         118 KVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQG  168 (190)
T ss_pred             ccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHHhhcc
Confidence            987777888888999999999999999999999999999999887655444

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04111 Rab39 Rab39 subfamily

Probab=99.96  E-value=3.8e-27  Score=174.12  Aligned_cols=162  Identities=38%  Similarity=0.645  Sum_probs=127.9

Q ss_pred             EEEE-CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCC
Q 043745           11 DFQV-EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLK   88 (174)
Q Consensus        11 ~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~   88 (174)
                      .+.+ ++..+.+++|||+|++.|..++..+++++|++++|||++++++|+.+..|+..+..... ...|++||+||.|+.
T Consensus        43 ~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~  122 (211)
T cd04111          43 LIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLE  122 (211)
T ss_pred             EEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccc
Confidence            4444 56678999999999999999999999999999999999999999999999999876543 457899999999998


Q ss_pred             CccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCC----CCCCCCCe-eEecCCCC
Q 043745           89 HLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAP----SNIKEGQT-IVVGGASE  163 (174)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~  163 (174)
                      +.+.+..++...+++.++++++++||+++.|++++|+++++.+.+.+.....+....-.    ..++...= ..--+...
T Consensus       123 ~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (211)
T cd04111         123 SQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRGELCALDGWDGVKSGFPAGRAFSLEERSPTF  202 (211)
T ss_pred             cccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcCCCCccccccccccCCCcccccccCcccccc
Confidence            77788889999999999999999999999999999999999998886655433333321    11111111 11122345


Q ss_pred             CCCCCCCCC
Q 043745          164 ANTKKPCCS  172 (174)
Q Consensus       164 ~~~~~~c~~  172 (174)
                      +...++|||
T Consensus       203 ~~~~~~~~~  211 (211)
T cd04111         203 ASPEKSCCC  211 (211)
T ss_pred             cCCCCCCCC
Confidence            566778887

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.96  E-value=7.6e-28  Score=174.02  Aligned_cols=129  Identities=25%  Similarity=0.534  Sum_probs=115.6

Q ss_pred             CCCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEE
Q 043745            3 QPRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHADSNIVIM   79 (174)
Q Consensus         3 ~pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~pii   79 (174)
                      .||+|  ..+.+.+++..+.+++|||+|+++|..++..+++++|++|+|||+++++||+.+ ..|+..+....+ +.|++
T Consensus        35 ~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~~pii  113 (182)
T cd04172          35 VPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKML  113 (182)
T ss_pred             CCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEE
Confidence            36777  455678899999999999999999999999999999999999999999999998 799999987764 79999


Q ss_pred             EEEeCCCCCC------------ccCCCHHHHHHHHHHhCC-cEEEEeccCCCC-HHHHHHHHHHHHH
Q 043745           80 MIGNKTDLKH------------LRAVATEDAQSYAEREGL-SFIETSALEAIN-VEKAFQTILSEIY  132 (174)
Q Consensus        80 lv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~v~~~l~~~i~  132 (174)
                      ||+||.||.+            .+.++.++++++++++++ +|++|||+++.| ++++|..+++.++
T Consensus       114 lVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         114 LVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             EEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence            9999999964            246889999999999995 899999999998 9999999998654

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd01875 RhoG RhoG subfamily

Probab=99.96  E-value=1e-27  Score=174.62  Aligned_cols=130  Identities=26%  Similarity=0.540  Sum_probs=113.6

Q ss_pred             CCCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEE
Q 043745            3 QPRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIM   79 (174)
Q Consensus         3 ~pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~pii   79 (174)
                      .||+|  ..+.+.+++..+.+++|||+|+++|+.++..+++++|++|+|||+++++||+.+. .|+..+..... ++|++
T Consensus        33 ~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~-~~pii  111 (191)
T cd01875          33 IPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCP-NVPIL  111 (191)
T ss_pred             CCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEE
Confidence            37777  3445678999999999999999999999999999999999999999999999996 69887776544 79999


Q ss_pred             EEEeCCCCCCc------------cCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           80 MIGNKTDLKHL------------RAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        80 lv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      ||+||.||.+.            +.+..++++.++++++ ++++++||++|.|++++|+++++.+..
T Consensus       112 lvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         112 LVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             EEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence            99999999653            2367788999999998 689999999999999999999988754

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04133 Rop_like Rop subfamily

Probab=99.96  E-value=6.6e-28  Score=173.43  Aligned_cols=127  Identities=31%  Similarity=0.579  Sum_probs=114.0

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piil   80 (174)
                      ||+|  ..+.+.+++..+.+.+|||+|+++|..++..+++++|++|+|||+++++||+.+ ..|+..+..... ++|++|
T Consensus        32 ~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~-~~piil  110 (176)
T cd04133          32 PTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAP-NVPIVL  110 (176)
T ss_pred             CcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCC-CCCEEE
Confidence            6777  444567899999999999999999999999999999999999999999999998 689999877654 799999


Q ss_pred             EEeCCCCCCcc----------CCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLR----------AVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        81 v~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      ||||.||.+.+          .++.++++.+++..+. .+++|||+++.|++++|+.+++.+
T Consensus       111 vgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~  172 (176)
T cd04133         111 VGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVV  172 (176)
T ss_pred             EEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence            99999996543          4888999999999998 599999999999999999999875

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=7.4e-29  Score=165.43  Aligned_cols=131  Identities=41%  Similarity=0.742  Sum_probs=122.6

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      .|+|   ..|.+.+++.++.+++|||+||++|++....||+++|+++++||+.+..||+++..|+.+|..+....+-+++
T Consensus        29 stvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~l  108 (192)
T KOG0083|consen   29 STVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALML  108 (192)
T ss_pred             eeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhh
Confidence            3566   5667788999999999999999999999999999999999999999999999999999999998887899999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      ++||+|+..++.+..++++.+++..++|++++||++|.|++-.|-.+.+.+.++
T Consensus       109 lgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k~  162 (192)
T KOG0083|consen  109 LGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKKL  162 (192)
T ss_pred             hccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHHh
Confidence            999999988899999999999999999999999999999999999999887765

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.3e-28  Score=165.95  Aligned_cols=137  Identities=38%  Similarity=0.684  Sum_probs=125.3

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      .|+|   -.|++.++|.++.+++|||+|+++|++....||+.++++|+|||++..++|+-+++|+.+|.++....+--|+
T Consensus        38 atigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkil  117 (213)
T KOG0095|consen   38 ATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKIL  117 (213)
T ss_pred             ceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEe
Confidence            4556   4567889999999999999999999999999999999999999999999999999999999998887788899


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSL  140 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~~  140 (174)
                      |+||+|+.+++++..+.+++|.+....-++++||+...|++.+|..+.-.+.........
T Consensus       118 vgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a~rli~~ar~~d~  177 (213)
T KOG0095|consen  118 VGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLACRLISEARQNDL  177 (213)
T ss_pred             eccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999999999999989999999999999999999998887776655544

>cd04125 RabA_like RabA-like subfamily

Probab=99.96  E-value=5.6e-27  Score=170.13  Aligned_cols=155  Identities=37%  Similarity=0.650  Sum_probs=129.7

Q ss_pred             CCCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE
Q 043745            3 QPRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM   79 (174)
Q Consensus         3 ~pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii   79 (174)
                      .||+|   ..+.+.+++..+.+.+||++|++.|..++..+++++|++|||||++++++|..+..|+..+........|++
T Consensus        30 ~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~i  109 (188)
T cd04125          30 KSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKV  109 (188)
T ss_pred             CCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEE
Confidence            35666   234667788889999999999999999999999999999999999999999999999999887765568999


Q ss_pred             EEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCeeEec
Q 043745           80 MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVG  159 (174)
Q Consensus        80 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (174)
                      +++||.|+.+.+.+..++.+.++...+++++++||+++.|++++|+++++.+..+.....          .++      .
T Consensus       110 vv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~~~~~~~~~----------~~~------~  173 (188)
T cd04125         110 IVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKLIIKRLEEQE----------LSP------K  173 (188)
T ss_pred             EEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhcCc----------CCc------c
Confidence            999999998777788888899999899999999999999999999999999886543331          111      2


Q ss_pred             CCCCCCCCCCCCCC
Q 043745          160 GASEANTKKPCCSS  173 (174)
Q Consensus       160 ~~~~~~~~~~c~~~  173 (174)
                      ......+++.||.+
T Consensus       174 ~~~~~~~~~~~~~~  187 (188)
T cd04125         174 NIKQQFKKKNNCFI  187 (188)
T ss_pred             ccccccccccCccc
Confidence            34556677777764

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.1e-27  Score=159.24  Aligned_cols=136  Identities=48%  Similarity=0.788  Sum_probs=126.4

Q ss_pred             ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745            8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL   87 (174)
Q Consensus         8 ~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl   87 (174)
                      -++.+.+.|+++.+++|||+|+++|+...+.||+++-+.+.|||++.+.+++.+..|+...+....++.-|++++||.||
T Consensus        49 gtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadl  128 (215)
T KOG0097|consen   49 GTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADL  128 (215)
T ss_pred             ceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhh
Confidence            45567789999999999999999999999999999999999999999999999999999988887788899999999999


Q ss_pred             CCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q 043745           88 KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSG  143 (174)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~~~~~  143 (174)
                      +..+++..++.++|+++.|+-++++||++|+|+++.|-...++|++..++...-..
T Consensus       129 e~qrdv~yeeak~faeengl~fle~saktg~nvedafle~akkiyqniqdgsldln  184 (215)
T KOG0097|consen  129 ESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETAKKIYQNIQDGSLDLN  184 (215)
T ss_pred             hhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHHHHHHHhhhcCccccc
Confidence            99999999999999999999999999999999999999999999998877755433

>cd04131 Rnd Rnd subfamily

Probab=99.95  E-value=3.4e-27  Score=170.12  Aligned_cols=128  Identities=24%  Similarity=0.520  Sum_probs=114.0

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piil   80 (174)
                      ||+|  +.+.+.+++..+.+++|||+|++.|..++..+++++|++|+|||+++++||+.+ ..|+..+....+ +.|++|
T Consensus        32 ~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~-~~~iil  110 (178)
T cd04131          32 PTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP-NTKVLL  110 (178)
T ss_pred             CceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC-CCCEEE
Confidence            6766  445677899999999999999999999999999999999999999999999996 899999987764 799999


Q ss_pred             EEeCCCCCC------------ccCCCHHHHHHHHHHhCC-cEEEEeccCCCC-HHHHHHHHHHHHH
Q 043745           81 IGNKTDLKH------------LRAVATEDAQSYAEREGL-SFIETSALEAIN-VEKAFQTILSEIY  132 (174)
Q Consensus        81 v~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~v~~~l~~~i~  132 (174)
                      |+||.||.+            .+.+..++++++++++++ .|+++||++|+| ++++|..+++..+
T Consensus       111 VgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         111 VGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMACL  176 (178)
T ss_pred             EEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence            999999964            245889999999999996 799999999995 9999999998644

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PLN03108 Rab family protein; Provisional

Probab=99.95  E-value=2.7e-26  Score=169.44  Aligned_cols=136  Identities=49%  Similarity=0.826  Sum_probs=120.5

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||+|   ..+.+.+++..+.+.+|||+|++.|..++..+++++|++++|||+++.++|..+..|+..+........|+++
T Consensus        37 ~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piii  116 (210)
T PLN03108         37 LTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIML  116 (210)
T ss_pred             CCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence            5555   2345678888899999999999999999999999999999999999999999999999888766555799999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKS  139 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~  139 (174)
                      ++||.|+.+.+.+..++++.++..++++++++||+++.|++++|+++++.+++...+..
T Consensus       117 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~~~~~~~~  175 (210)
T PLN03108        117 IGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKIQDGV  175 (210)
T ss_pred             EEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence            99999998877888899999999999999999999999999999999999988765443

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.9e-27  Score=161.09  Aligned_cols=133  Identities=46%  Similarity=0.724  Sum_probs=124.5

Q ss_pred             ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745            8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL   87 (174)
Q Consensus         8 ~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl   87 (174)
                      -++.+.+.++.+.+++|||+||++|++..+.||+++-+.++|||++++++|+.+..|+..++...++++-+++++||.||
T Consensus        47 gSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL  126 (214)
T KOG0086|consen   47 GSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDL  126 (214)
T ss_pred             cceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhc
Confidence            45567889999999999999999999999999999999999999999999999999999999888888999999999999


Q ss_pred             CCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q 043745           88 KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSL  140 (174)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~~  140 (174)
                      .+.++++..++..|+.+..+-++++||++|+|+++.|-...+.|+.+....+.
T Consensus       127 ~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~tIl~kIE~GEl  179 (214)
T KOG0086|consen  127 DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIESGEL  179 (214)
T ss_pred             ChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHHHHHHHHhhcCC
Confidence            99999999999999999999999999999999999999999999988655443

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.95  E-value=8.1e-27  Score=167.23  Aligned_cols=130  Identities=29%  Similarity=0.458  Sum_probs=116.3

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piil   80 (174)
                      ||+|  ..+.+.+++..+.++||||+|+++|..++..+++++|++|+|||++++++|+.+..|+..+.+... .++|+++
T Consensus        33 ~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piil  112 (172)
T cd04141          33 PTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVL  112 (172)
T ss_pred             CcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence            5665  333567889899999999999999999999999999999999999999999999999888766432 5799999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      |+||.|+...+.++.++++.+++.++++++++||+++.|++++|+++++.+.+
T Consensus       113 vgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~  165 (172)
T cd04141         113 VGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVREIRR  165 (172)
T ss_pred             EEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            99999998777888899999999999999999999999999999999988776

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04112 Rab26 Rab26 subfamily

Probab=99.95  E-value=2e-26  Score=167.77  Aligned_cols=125  Identities=44%  Similarity=0.768  Sum_probs=114.0

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      .+.+++..+.+.||||+|+++|...+..+++++|++|+|||+++.++|+.+..|+..+......++|+++|+||+|+...
T Consensus        42 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~  121 (191)
T cd04112          42 VVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGE  121 (191)
T ss_pred             EEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhc
Confidence            45678888999999999999999999999999999999999999999999999999988776567999999999999766


Q ss_pred             cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745           91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                      +.+..++.+.++..++.+++++||+++.|++++|+++++.+....
T Consensus       122 ~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~  166 (191)
T cd04112         122 RVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRK  166 (191)
T ss_pred             cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            777788899999999999999999999999999999999987653

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04122 Rab14 Rab14 subfamily

Probab=99.95  E-value=1.6e-26  Score=164.42  Aligned_cols=124  Identities=49%  Similarity=0.846  Sum_probs=113.6

Q ss_pred             eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      +.+.+++..+.+.+||++|+++|...+..+++++|++|+|||++++++|+.+..|+..+......+.|+++|+||+|+.+
T Consensus        42 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~  121 (166)
T cd04122          42 RIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEA  121 (166)
T ss_pred             EEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence            34567888999999999999999999999999999999999999999999999999988776556789999999999988


Q ss_pred             ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      .+.+..+++++++...+++++++||+++.|++++|.++++.+.+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~~~  165 (166)
T cd04122         122 QRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQ  165 (166)
T ss_pred             ccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            77888899999999999999999999999999999999988754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.4e-27  Score=162.43  Aligned_cols=124  Identities=43%  Similarity=0.737  Sum_probs=114.7

Q ss_pred             CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCCCccCCC
Q 043745           16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLKHLRAVA   94 (174)
Q Consensus        16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~   94 (174)
                      +.++.+++|||+||++|+++...||++|-+++++||+++.+||.++..|+.+++.+.- ++.-|++++||.||++.+.++
T Consensus        64 ~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs  143 (219)
T KOG0081|consen   64 GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVS  143 (219)
T ss_pred             ceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhh
Confidence            3467899999999999999999999999999999999999999999999999976654 466799999999999999999


Q ss_pred             HHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q 043745           95 TEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKS  139 (174)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~  139 (174)
                      ..++..+++++|+|||++||-+|.|+++..+.++..+++++..--
T Consensus       144 ~~qa~~La~kyglPYfETSA~tg~Nv~kave~LldlvM~Rie~~v  188 (219)
T KOG0081|consen  144 EDQAAALADKYGLPYFETSACTGTNVEKAVELLLDLVMKRIEQCV  188 (219)
T ss_pred             HHHHHHHHHHhCCCeeeeccccCcCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999876543

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.95  E-value=3.1e-26  Score=167.76  Aligned_cols=129  Identities=30%  Similarity=0.561  Sum_probs=112.7

Q ss_pred             CCCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE
Q 043745            3 QPRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM   79 (174)
Q Consensus         3 ~pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii   79 (174)
                      .||+|   ..+.+.+++..+.+.||||+|+++|..++..+|+++|++|+|||++++.+|..+..|+..+..... ++|++
T Consensus        25 ~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~-~~pii  103 (200)
T smart00176       25 VATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCE-NIPIV  103 (200)
T ss_pred             CCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC-CCCEE
Confidence            36777   345667788999999999999999999999999999999999999999999999999999987654 79999


Q ss_pred             EEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           80 MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        80 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      ||+||+|+.. +.+..+. ..++...++.++++||+++.|++++|+++++.+...
T Consensus       104 lvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176      104 LCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             EEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            9999999965 4455444 467788889999999999999999999999988664

Ran is involved in the active transport of proteins through nuclear pores.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.95  E-value=4.9e-26  Score=169.00  Aligned_cols=131  Identities=23%  Similarity=0.466  Sum_probs=113.6

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piil   80 (174)
                      ||++  +.+.+.+++..+.|.||||+|++.|..++..+|+++|++|+|||++++++|+.+ ..|...+.... +++|++|
T Consensus        32 pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~-~~~piiL  110 (222)
T cd04173          32 PTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC-PNAKVVL  110 (222)
T ss_pred             CccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEE
Confidence            7777  445677899999999999999999999999999999999999999999999999 56877776554 4799999


Q ss_pred             EEeCCCCCCc------------cCCCHHHHHHHHHHhCC-cEEEEeccCCCC-HHHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHL------------RAVATEDAQSYAEREGL-SFIETSALEAIN-VEKAFQTILSEIYRII  135 (174)
Q Consensus        81 v~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~v~~~l~~~i~~~~  135 (174)
                      |+||+||.+.            ..++.++++.++++.+. .|+||||+++.+ ++++|..++...+.+.
T Consensus       111 VgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~~  179 (222)
T cd04173         111 VGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGRG  179 (222)
T ss_pred             EEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhcc
Confidence            9999999642            13778899999999995 899999999985 9999999999877654

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>PTZ00369 Ras-like protein; Provisional

Probab=99.95  E-value=5.1e-26  Score=165.33  Aligned_cols=133  Identities=32%  Similarity=0.546  Sum_probs=117.1

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piil   80 (174)
                      ||+|  +.+.+.+++..+.+++|||+|+++|..++..+++++|++++|||++++++|+.+..|+..+..... .++|+++
T Consensus        36 ~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piii  115 (189)
T PTZ00369         36 PTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMIL  115 (189)
T ss_pred             CchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence            5555  334567889899999999999999999999999999999999999999999999999998876543 4789999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIIS  136 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~  136 (174)
                      |+||.|+.+.+.+..++...++..++++++++||+++.|++++|+++++.+.+...
T Consensus       116 v~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~~~~  171 (189)
T PTZ00369        116 VGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYLK  171 (189)
T ss_pred             EEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            99999997767778888888998889999999999999999999999998876544

>cd04109 Rab28 Rab28 subfamily

Probab=99.95  E-value=8e-26  Score=167.52  Aligned_cols=131  Identities=29%  Similarity=0.504  Sum_probs=114.8

Q ss_pred             CCcc---ceeEEEECC-eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCC
Q 043745            4 PRLG---KLCDFQVEG-RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD---SNI   76 (174)
Q Consensus         4 pt~g---~~~~~~~~~-~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~   76 (174)
                      ||+|   ..+.+.+++ ..+.++|||++|++.|..++..+++++|++|||||++++++|+.+..|+..+.....   .+.
T Consensus        31 ~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~  110 (215)
T cd04109          31 QTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQP  110 (215)
T ss_pred             CceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCc
Confidence            5555   234556644 578999999999999999999999999999999999999999999999999877643   357


Q ss_pred             eEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           77 VIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        77 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      |+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|+++++.+...
T Consensus       111 piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~~  168 (215)
T cd04109         111 LVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAELLGV  168 (215)
T ss_pred             eEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            8999999999987778888899999999999999999999999999999999988764

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04117 Rab15 Rab15 subfamily

Probab=99.95  E-value=6.6e-26  Score=160.73  Aligned_cols=127  Identities=35%  Similarity=0.698  Sum_probs=114.7

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||+|   ..+.+.+++..+.+.+||++|+++|..++..+++++|++++|||++++++|+.+..|+..+......+.|+++
T Consensus        31 ~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iil  110 (161)
T cd04117          31 STIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKIL  110 (161)
T ss_pred             CceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence            5666   2346677888899999999999999999999999999999999999999999999999998776655799999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      |+||.|+.+.+.+..+++..+++.++.+++++||+++.|++++|.+|++.
T Consensus       111 vgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117         111 IGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             EEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            99999998878888899999999999999999999999999999999864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.95  E-value=9.8e-26  Score=159.45  Aligned_cols=129  Identities=35%  Similarity=0.729  Sum_probs=120.8

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||.|   ..+.+.+++..+.+.+||++|+++|..++..+++++|++|+|||+++++||+.+..|+..+......+.|++|
T Consensus        30 ~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iiv  109 (162)
T PF00071_consen   30 PTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIV  109 (162)
T ss_dssp             TTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccee
Confidence            6776   5667888999999999999999999999999999999999999999999999999999999888776799999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      ++||.|+.+.+.++.++++.++.+++.+++++||+++.|+.++|..+++.+.
T Consensus       110 vg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i~  161 (162)
T PF00071_consen  110 VGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKIL  161 (162)
T ss_dssp             EEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred             eeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            9999999987899999999999999999999999999999999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.95  E-value=3.7e-26  Score=164.25  Aligned_cols=127  Identities=24%  Similarity=0.469  Sum_probs=111.0

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piil   80 (174)
                      ||+|  ..+.+.+++..+.+.||||+|+++|..++..+++++|++|||||++++++|+.+. .|+..+....+ ++|+++
T Consensus        32 pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~-~~piil  110 (175)
T cd01874          32 PTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLL  110 (175)
T ss_pred             CceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEE
Confidence            6776  3345678888899999999999999999999999999999999999999999996 59888876553 799999


Q ss_pred             EEeCCCCCCc------------cCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHL------------RAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        81 v~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      |+||.|+...            +.+..+++++++++.+ +.++++||++|.|++++|+.++..+
T Consensus       111 vgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~  174 (175)
T cd01874         111 VGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA  174 (175)
T ss_pred             EEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence            9999998643            5677888999998887 6899999999999999999998754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.94  E-value=1.4e-25  Score=159.83  Aligned_cols=130  Identities=45%  Similarity=0.874  Sum_probs=115.9

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||.|   ..+.+.+++..+.+++||++|++.|..++..+++++|++++|||++++++|..+..|+..+......++|+++
T Consensus        34 ~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ii  113 (167)
T cd01867          34 STIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERML  113 (167)
T ss_pred             cCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEE
Confidence            4555   2335567888899999999999999999999999999999999999999999999999998876555799999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      |+||+|+.+.+.+..+++..++..++++++++||+++.|++++|+++.+.+..
T Consensus       114 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  166 (167)
T cd01867         114 VGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKDIKK  166 (167)
T ss_pred             EEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            99999998777778888999999999999999999999999999999998764

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd01865 Rab3 Rab3 subfamily

Probab=99.94  E-value=1.4e-25  Score=159.57  Aligned_cols=123  Identities=40%  Similarity=0.738  Sum_probs=111.5

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      ++..++..+.+.+||++|+++|..++..+++++|++++|||+++.++|+.+..|+..+........|+++|+||+|+.+.
T Consensus        42 ~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~  121 (165)
T cd01865          42 TVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE  121 (165)
T ss_pred             EEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcc
Confidence            45567788999999999999999999999999999999999999999999999999987766557899999999999877


Q ss_pred             cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      +.+..++...++..++++++++||+++.|++++|++++..+.+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~  164 (165)
T cd01865         122 RVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDIICD  164 (165)
T ss_pred             cccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            7777888888999999999999999999999999999987653

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04134 Rho3 Rho3 subfamily

Probab=99.94  E-value=1e-25  Score=163.76  Aligned_cols=129  Identities=30%  Similarity=0.536  Sum_probs=110.6

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piil   80 (174)
                      ||++  ..+.+.+++..+.++|||++|++.|..++..++.++|++|+|||++++++|+.+. .|+..+..... +.|+++
T Consensus        31 ~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~-~~piil  109 (189)
T cd04134          31 PTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP-GVKLVL  109 (189)
T ss_pred             CcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEE
Confidence            5665  3345567888899999999999999999999999999999999999999999986 69988876554 799999


Q ss_pred             EEeCCCCCCcc------------CCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLR------------AVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        81 v~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      |+||+||.+.+            .+..+++..++...+ +.++++||+++.|++++|+++++.+..
T Consensus       110 vgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~  175 (189)
T cd04134         110 VALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVALN  175 (189)
T ss_pred             EEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence            99999996543            355677888888877 789999999999999999999988863

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04127 Rab27A Rab27a subfamily

Probab=99.94  E-value=1.3e-25  Score=161.65  Aligned_cols=119  Identities=43%  Similarity=0.768  Sum_probs=108.7

Q ss_pred             CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCCCccCCC
Q 043745           16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLKHLRAVA   94 (174)
Q Consensus        16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~   94 (174)
                      +..+.+.|||++|+++|..++..+++++|++++|||++++++|..+..|+..+..... .+.|+++|+||+|+.+.+.+.
T Consensus        60 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~  139 (180)
T cd04127          60 GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVS  139 (180)
T ss_pred             CCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccC
Confidence            4568899999999999999999999999999999999999999999999999876542 468999999999998777788


Q ss_pred             HHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           95 TEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      .+++.+++..++++++++||+++.|++++|+++++.+.++
T Consensus       140 ~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         140 EEQAKALADKYGIPYFETSAATGTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            8899999999999999999999999999999999888754

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04118 Rab24 Rab24 subfamily

Probab=99.94  E-value=4.7e-25  Score=160.53  Aligned_cols=134  Identities=34%  Similarity=0.579  Sum_probs=114.7

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||+|   ..+.+.+++..+.+.+||++|+++|..++..+++++|++++|||+++.++|+.+..|+..+..... +.|+++
T Consensus        32 ~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~-~~piil  110 (193)
T cd04118          32 NTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEE-HCKIYL  110 (193)
T ss_pred             cceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCC-CCCEEE
Confidence            4555   234677888899999999999999999999999999999999999999999999999999876543 789999


Q ss_pred             EEeCCCCCCc----cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q 043745           81 IGNKTDLKHL----RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK  138 (174)
Q Consensus        81 v~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~  138 (174)
                      |+||.|+.+.    +.+..+++..++...+++++++||+++.|++++|+++++.+.++..++
T Consensus       111 v~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~~~  172 (193)
T cd04118         111 CGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSRANNQ  172 (193)
T ss_pred             EEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcccc
Confidence            9999998532    355667788888888999999999999999999999999998765433

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04128 Spg1 Spg1p

Probab=99.94  E-value=1.4e-25  Score=162.21  Aligned_cols=130  Identities=25%  Similarity=0.478  Sum_probs=111.2

Q ss_pred             CCCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE
Q 043745            3 QPRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM   79 (174)
Q Consensus         3 ~pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii   79 (174)
                      .||+|   ..+.+.+++..+.+++||++|++.|..++..+++++|++++|||++++++|+.+..|+..+........| +
T Consensus        30 ~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-i  108 (182)
T cd04128          30 IQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-I  108 (182)
T ss_pred             CCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-E
Confidence            37887   3357788999999999999999999999999999999999999999999999999999998776554566 6


Q ss_pred             EEEeCCCCCC-----ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           80 MIGNKTDLKH-----LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        80 lv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      +|+||+|+..     .+....++.+.+++.++++++++||+++.|++++|+++++.+..
T Consensus       109 lVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~  167 (182)
T cd04128         109 LVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFD  167 (182)
T ss_pred             EEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            7899999952     11223466788888889999999999999999999999988865

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.94  E-value=2.4e-25  Score=158.24  Aligned_cols=125  Identities=50%  Similarity=0.843  Sum_probs=113.3

Q ss_pred             eeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745            9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus         9 ~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      .+.+.+++..+.+.+||++|+++|..++..+++++|++|+|||++++++|..+..|+..+......+.|+++++||.|+.
T Consensus        41 ~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~  120 (166)
T cd01869          41 IRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT  120 (166)
T ss_pred             EEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcc
Confidence            34566788889999999999999999999999999999999999999999999999999877654578999999999998


Q ss_pred             CccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           89 HLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      ..+.+..+++..++..++++++++||+++.|++++|+++++.+..
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  165 (166)
T cd01869         121 DKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAREIKK  165 (166)
T ss_pred             cccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHHHHh
Confidence            777788889999999999999999999999999999999988753

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04175 Rap1 Rap1 subgroup

Probab=99.94  E-value=1.6e-25  Score=158.89  Aligned_cols=129  Identities=30%  Similarity=0.528  Sum_probs=112.9

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piil   80 (174)
                      ||++  ..+.+.+++..+.+.+|||+|++.|..++..+++++|++++|||+++.++|+.+..|+..+.... ..+.|+++
T Consensus        32 ~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil  111 (164)
T cd04175          32 PTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMIL  111 (164)
T ss_pred             CcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence            4555  23456778889999999999999999999999999999999999999999999999999886543 25799999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      |+||+|+...+.+..++...+++.++++++++||+++.|++++|.++++.+.
T Consensus       112 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~  163 (164)
T cd04175         112 VGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQIN  163 (164)
T ss_pred             EEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHhh
Confidence            9999999876677777888889889999999999999999999999987653

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>PLN03118 Rab family protein; Provisional

Probab=99.94  E-value=7.3e-25  Score=161.88  Aligned_cols=125  Identities=42%  Similarity=0.695  Sum_probs=109.6

Q ss_pred             eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHH-HHHHHHhhcC-CCCeEEEEEeCCCC
Q 043745           10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSR-WLKELRDHAD-SNIVIMMIGNKTDL   87 (174)
Q Consensus        10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~i~~~~~-~~~piilv~nK~Dl   87 (174)
                      +.+.+++..+.+.||||+|+++|..++..+++++|++|+|||++++++|..+.. |...+..... .+.|+++|+||+|+
T Consensus        53 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl  132 (211)
T PLN03118         53 KQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDR  132 (211)
T ss_pred             EEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            345678888999999999999999999999999999999999999999999965 6666554332 46899999999999


Q ss_pred             CCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           88 KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      ...+.+..++...++..+++.++++||+++.|++++|+++.+.+...
T Consensus       133 ~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~~  179 (211)
T PLN03118        133 ESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEV  179 (211)
T ss_pred             cccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            87677778888889998999999999999999999999999998764

>cd01866 Rab2 Rab2 subfamily

Probab=99.94  E-value=2.2e-25  Score=158.96  Aligned_cols=124  Identities=52%  Similarity=0.885  Sum_probs=112.5

Q ss_pred             eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      +.+.+++..+.+.+||++|+++|..++..+++++|+++||||++++++++.+..|+..+..+...+.|+++|+||.|+.+
T Consensus        44 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~  123 (168)
T cd01866          44 RMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLES  123 (168)
T ss_pred             EEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence            34567888899999999999999999999999999999999999999999999999998776555799999999999986


Q ss_pred             ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      .+.+..++++.++...+++++++||+++.|++++|.++.+.+.+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~~~  167 (168)
T cd01866         124 RREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEIYE  167 (168)
T ss_pred             ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            66788888999999999999999999999999999999988754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04136 Rap_like Rap-like subfamily

Probab=99.94  E-value=1.9e-25  Score=157.90  Aligned_cols=122  Identities=32%  Similarity=0.570  Sum_probs=109.2

Q ss_pred             eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCC
Q 043745           10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLK   88 (174)
Q Consensus        10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~   88 (174)
                      +.+.+++..+.++||||+|+++|..++..+++++|++++|||+++.++|+.+..|+..+..... .+.|+++|+||+|+.
T Consensus        40 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  119 (163)
T cd04136          40 KQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLE  119 (163)
T ss_pred             EEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence            4566788889999999999999999999999999999999999999999999999998876543 478999999999997


Q ss_pred             CccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           89 HLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      +.+.+..++...+++.++.+++++||+++.|++++|+++++.+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  162 (163)
T cd04136         120 DERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQI  162 (163)
T ss_pred             ccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence            7667777888888888889999999999999999999998754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.94  E-value=1.3e-25  Score=163.93  Aligned_cols=115  Identities=23%  Similarity=0.496  Sum_probs=102.6

Q ss_pred             EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCCC--
Q 043745           13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMIGNKTDLKH--   89 (174)
Q Consensus        13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~--   89 (174)
                      .+++..+.++||||+|++.  .+...+|+++|++|+|||+++++||+.+. .|+..+..... +.|+++|+||+||..  
T Consensus        60 ~~~~~~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~  136 (195)
T cd01873          60 VVDGVSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGCKLDLRYAD  136 (195)
T ss_pred             eeCCEEEEEEEEeCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhccccc
Confidence            5789999999999999986  35667899999999999999999999996 69998876653 789999999999964  


Q ss_pred             -----------------ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745           90 -----------------LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        90 -----------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                                       .+.++.+++++++++++++|++|||++|.|++++|+.+++.
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         137 LDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             cchhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence                             36788999999999999999999999999999999998864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.94  E-value=5.2e-25  Score=159.47  Aligned_cols=126  Identities=35%  Similarity=0.595  Sum_probs=109.2

Q ss_pred             EEEEC-CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745           11 DFQVE-GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus        11 ~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      .+... +..+.+.||||+|+++|..++..+++++|++++|||++++++|+.+. .|+..+.... .++|+++|+||.|+.
T Consensus        40 ~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~  118 (187)
T cd04132          40 NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLR  118 (187)
T ss_pred             EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhh
Confidence            34444 77889999999999999999999999999999999999999999995 5988876654 379999999999996


Q ss_pred             Cc----cCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q 043745           89 HL----RAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIYRIISK  137 (174)
Q Consensus        89 ~~----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~  137 (174)
                      ..    +.+..++.++++..+++ +++++||+++.|++++|+.+++.+...+..
T Consensus       119 ~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~~  172 (187)
T cd04132         119 KDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALKKEGK  172 (187)
T ss_pred             hCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHhhhhh
Confidence            53    35677889999999998 899999999999999999999998876533

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.94  E-value=2.5e-25  Score=159.83  Aligned_cols=126  Identities=28%  Similarity=0.556  Sum_probs=109.5

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piil   80 (174)
                      ||++  ..+.+.+++..+.+.+|||+|++.|..++..+++++|++|||||++++++|+.+. .|+..+.... .++|+++
T Consensus        32 ~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~-~~~piil  110 (174)
T cd01871          32 PTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIIL  110 (174)
T ss_pred             CcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEE
Confidence            5555  3345678888999999999999999999999999999999999999999999995 6888876654 3799999


Q ss_pred             EEeCCCCCCc------------cCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHH
Q 043745           81 IGNKTDLKHL------------RAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        81 v~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      |+||.|+.+.            +.+..+++++++++++ ++++++||++|.|++++|+.+++.
T Consensus       111 vgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~  173 (174)
T cd01871         111 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA  173 (174)
T ss_pred             EeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence            9999999542            3578899999999998 489999999999999999998864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04113 Rab4 Rab4 subfamily

Probab=99.94  E-value=2.7e-25  Score=157.11  Aligned_cols=121  Identities=50%  Similarity=0.824  Sum_probs=110.9

Q ss_pred             eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      +.+.+++..+.++|||++|++.|..++..+++++|++++|||+++++++..+..|+..+......++|+++++||.|+..
T Consensus        40 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~  119 (161)
T cd04113          40 KIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLAD  119 (161)
T ss_pred             EEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcch
Confidence            34567888899999999999999999999999999999999999999999999999988766656899999999999987


Q ss_pred             ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745           90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      .+.+..++...++..+++.++++||+++.|++++|+++++.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113         120 QREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             hccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            77788889999999999999999999999999999999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.94  E-value=1.9e-25  Score=159.82  Aligned_cols=121  Identities=31%  Similarity=0.607  Sum_probs=107.7

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      .+.+++..+.+.+|||+|++.|..++..+++++|++|+|||+++.++|+.+. .|+..+....+ ++|+++|+||+|+..
T Consensus        38 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~  116 (174)
T smart00174       38 DVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP-NTPIILVGTKLDLRE  116 (174)
T ss_pred             EEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEecChhhhh
Confidence            5567888899999999999999999999999999999999999999999995 69998877654 799999999999965


Q ss_pred             c------------cCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           90 L------------RAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        90 ~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      .            +.+..++++.++..++. .++++||+++.|++++|+.+++.++
T Consensus       117 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~  172 (174)
T smart00174      117 DKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAAL  172 (174)
T ss_pred             ChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHhc
Confidence            2            23777888999999986 8999999999999999999998875

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.94  E-value=5.3e-25  Score=163.53  Aligned_cols=129  Identities=32%  Similarity=0.580  Sum_probs=110.7

Q ss_pred             CCCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE
Q 043745            3 QPRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM   79 (174)
Q Consensus         3 ~pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii   79 (174)
                      .||+|   ..+.+.+++..+.+.+|||+|+++|..++..+++++|++|+|||++++++|..+..|+..+..... ++|++
T Consensus        43 ~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~-~~pii  121 (219)
T PLN03071         43 EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIV  121 (219)
T ss_pred             CCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCcEE
Confidence            36666   233455677889999999999999999999999999999999999999999999999999987654 79999


Q ss_pred             EEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           80 MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        80 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      ||+||+|+.. +.+..+++ .++...+++++++||+++.|++++|+++++.+...
T Consensus       122 lvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~~  174 (219)
T PLN03071        122 LCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  174 (219)
T ss_pred             EEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence            9999999965 34445555 67777889999999999999999999999988654

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.94  E-value=5.4e-25  Score=155.95  Aligned_cols=123  Identities=36%  Similarity=0.610  Sum_probs=109.3

Q ss_pred             eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCC
Q 043745           10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLK   88 (174)
Q Consensus        10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~   88 (174)
                      +.+.+++..+.+.+|||+|+++|..++..+++++|++++|||++++++|+.+..|...+..... .+.|+++|+||+|+.
T Consensus        39 ~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~  118 (164)
T smart00173       39 KQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLE  118 (164)
T ss_pred             EEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence            3456788889999999999999999999999999999999999999999999999888765433 478999999999998


Q ss_pred             CccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           89 HLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      +.+.+..++...++..++.+++++||+++.|++++|+++++.+.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  162 (164)
T smart00173      119 SERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIR  162 (164)
T ss_pred             ccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence            76677778888899989999999999999999999999988754

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.93  E-value=1.1e-24  Score=154.46  Aligned_cols=124  Identities=34%  Similarity=0.658  Sum_probs=111.4

Q ss_pred             eeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-----CCCeEEEEEe
Q 043745            9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-----SNIVIMMIGN   83 (174)
Q Consensus         9 ~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-----~~~piilv~n   83 (174)
                      .+.+.+++..+.++||||+|++.|..++..+++++|++|+|||++++++++.+..|+..+.....     .+.|+++|+|
T Consensus        39 ~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~n  118 (168)
T cd04119          39 VKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCAN  118 (168)
T ss_pred             EEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEE
Confidence            34566788899999999999999999999999999999999999999999999999999876643     4689999999


Q ss_pred             CCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           84 KTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        84 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      |.|+.+.+.+..++.+.++...+++++++||+++.|++++|+++++.++
T Consensus       119 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~  167 (168)
T cd04119         119 KIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIV  167 (168)
T ss_pred             chhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            9999765677888888899989999999999999999999999998875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04176 Rap2 Rap2 subgroup

Probab=99.93  E-value=7.2e-25  Score=155.25  Aligned_cols=122  Identities=26%  Similarity=0.487  Sum_probs=108.5

Q ss_pred             eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCC
Q 043745           10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLK   88 (174)
Q Consensus        10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~   88 (174)
                      +.+.+++..+.++||||+|+++|..++..+++++|++++|||++++++|+++..|+..+..... .++|+++|+||+|+.
T Consensus        40 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~  119 (163)
T cd04176          40 KEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE  119 (163)
T ss_pred             EEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence            3567788888999999999999999999999999999999999999999999999888876532 579999999999997


Q ss_pred             CccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           89 HLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      ..+.+...+...++..++++++++||+++.|++++|.++++.+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd04176         120 SEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM  162 (163)
T ss_pred             hcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence            6667777788888888889999999999999999999998653

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.93  E-value=9.7e-25  Score=154.36  Aligned_cols=123  Identities=57%  Similarity=0.982  Sum_probs=111.7

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      .+.+++..+.+.+||++|++.|...+..+++++|++++|||+++.++++.+..|+..+..+...++|+++++||+|+...
T Consensus        41 ~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~  120 (164)
T smart00175       41 TIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQ  120 (164)
T ss_pred             EEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccc
Confidence            45677888899999999999999999999999999999999999999999999999987776558999999999999876


Q ss_pred             cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      +++..+..+.+++..+++++++||+++.|++++|+++.+.+..
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~~  163 (164)
T smart00175      121 RQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILK  163 (164)
T ss_pred             cCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            6778888889999899999999999999999999999988754

Rab GTPases are implicated in vesicle trafficking.

>cd01868 Rab11_like Rab11-like

Probab=99.93  E-value=1.9e-24  Score=153.40  Aligned_cols=128  Identities=73%  Similarity=1.153  Sum_probs=113.9

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||.|   ..+.+.+++..+.+.+||++|+++|..++..++++++++|+|||+++.+++..+..|+..+......++|+++
T Consensus        34 ~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~v  113 (165)
T cd01868          34 STIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIML  113 (165)
T ss_pred             CccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence            4554   3445667888889999999999999999999999999999999999999999999999998877655699999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      |+||.|+...+.+..++...++...++.++++||+++.|++++|++++..+
T Consensus       114 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i  164 (165)
T cd01868         114 VGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI  164 (165)
T ss_pred             EEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            999999987777888888999988899999999999999999999998765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.93  E-value=1.7e-24  Score=154.89  Aligned_cols=130  Identities=30%  Similarity=0.594  Sum_probs=111.7

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIM   79 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pii   79 (174)
                      ||+|   ..+.+.+++..+.++||||+|+++|..++..+++++|++++|||+++++++..+..|+..+.... +...|++
T Consensus        31 ~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ii  110 (170)
T cd04108          31 ATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLF  110 (170)
T ss_pred             CceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEE
Confidence            6666   33566788889999999999999999999999999999999999999999999999999876543 3457899


Q ss_pred             EEEeCCCCCCccC--CCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           80 MIGNKTDLKHLRA--VATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        80 lv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      +|+||.|+.+...  +..+++..++.+++.+++++||+++.|++++|+.+++.+.+
T Consensus       111 lVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~  166 (170)
T cd04108         111 LVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALTFE  166 (170)
T ss_pred             EEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            9999999965433  34667788888889999999999999999999999988765

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.93  E-value=3.2e-24  Score=151.76  Aligned_cols=122  Identities=35%  Similarity=0.597  Sum_probs=108.8

Q ss_pred             eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCC
Q 043745           10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLK   88 (174)
Q Consensus        10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~   88 (174)
                      +.+.+++..+.+++|||+|+++|..++..+++++|++++|||+++.++|+.+..|+..+..... .+.|+++++||+|+.
T Consensus        41 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~  120 (164)
T cd04145          41 KQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE  120 (164)
T ss_pred             EEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc
Confidence            3456788889999999999999999999999999999999999999999999999988876432 478999999999998


Q ss_pred             CccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           89 HLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      ..+.+..++...++..++++++++||+++.|++++|+++++.+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  163 (164)
T cd04145         121 HQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRVI  163 (164)
T ss_pred             ccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence            7667777888889988899999999999999999999998764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd01864 Rab19 Rab19 subfamily

Probab=99.93  E-value=3.3e-24  Score=152.30  Aligned_cols=122  Identities=47%  Similarity=0.834  Sum_probs=109.8

Q ss_pred             eeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745            9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus         9 ~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      .+.+.+++..+.+.|||++|++.|..++..+++.+|++++|||++++++|..+..|+..+......++|+++|+||+|+.
T Consensus        42 ~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~  121 (165)
T cd01864          42 MKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLE  121 (165)
T ss_pred             EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence            34566788888999999999999999999999999999999999999999999999999977655679999999999998


Q ss_pred             CccCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHH
Q 043745           89 HLRAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      +.+++..+++..+++.++. .++++||+++.|++++|+++.+.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~  164 (165)
T cd01864         122 EQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE  164 (165)
T ss_pred             cccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence            7777888889999998885 68999999999999999999865

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.93  E-value=4.3e-24  Score=150.95  Aligned_cols=119  Identities=30%  Similarity=0.597  Sum_probs=107.0

Q ss_pred             EEEEC--CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745           11 DFQVE--GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus        11 ~~~~~--~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      .+.++  +..+.++|||++|+++|..++..+++++|++++|||++++++|..+..|+..+..... ++|+++|+||.|+.
T Consensus        41 ~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~-~~p~iiv~nK~Dl~  119 (162)
T cd04106          41 QIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLL  119 (162)
T ss_pred             EEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhcc
Confidence            44555  7778999999999999999999999999999999999999999999999998876543 79999999999998


Q ss_pred             CccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745           89 HLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      ..+.+..+++..+++.++++++++||+++.|++++|+++...
T Consensus       120 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  161 (162)
T cd04106         120 DQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK  161 (162)
T ss_pred             cccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            767788888999999999999999999999999999988753

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04124 RabL2 RabL2 subfamily

Probab=99.93  E-value=2.5e-24  Score=152.55  Aligned_cols=120  Identities=36%  Similarity=0.628  Sum_probs=104.5

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      .+.+++..+.+++|||+|++.|..++..+++++|++|+|||++++.+++.+..|+..+..... +.|+++|+||+|+...
T Consensus        41 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~p~ivv~nK~Dl~~~  119 (161)
T cd04124          41 NAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRP-EIPCIVVANKIDLDPS  119 (161)
T ss_pred             EEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEECccCchh
Confidence            345688889999999999999999999999999999999999999999999999999876543 6899999999998532


Q ss_pred             cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                         ...+...++...+++++++||+++.|++++|+.+++.+.++
T Consensus       120 ---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~  160 (161)
T cd04124         120 ---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVSY  160 (161)
T ss_pred             ---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence               23455667777789999999999999999999999887764

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01861 Rab6 Rab6 subfamily

Probab=99.93  E-value=3.7e-24  Score=151.10  Aligned_cols=120  Identities=39%  Similarity=0.728  Sum_probs=107.9

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      .+.+++..+.+++||++|++.|..++..+++++|++++|||++++++|+.+..|+..+......+.|+++++||+|+...
T Consensus        41 ~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~  120 (161)
T cd01861          41 TMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK  120 (161)
T ss_pred             EEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcccc
Confidence            45567777899999999999999999999999999999999999999999999999987655446999999999999765


Q ss_pred             cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745           91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      +.+..++...++...+++++++||+++.|++++|+++.+.
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861         121 RQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             CccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            6777888888888889999999999999999999999764

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04140 ARHI_like ARHI subfamily

Probab=99.93  E-value=5.2e-24  Score=151.40  Aligned_cols=120  Identities=28%  Similarity=0.375  Sum_probs=106.4

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCeEEEEEeCCCC
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD---SNIVIMMIGNKTDL   87 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl   87 (174)
                      .+..++..+.+++|||+|+++|..++..+++++|++++|||+++.++++.+..|+..+.....   .++|+++|+||+|+
T Consensus        41 ~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl  120 (165)
T cd04140          41 VISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDE  120 (165)
T ss_pred             EEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccc
Confidence            445677888999999999999999999999999999999999999999999999887766432   46899999999999


Q ss_pred             CCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745           88 KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      .+.+++..+++..++...+++++++||++|.|++++|++|+..
T Consensus       121 ~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~~  163 (165)
T cd04140         121 SHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLNL  163 (165)
T ss_pred             cccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHhc
Confidence            8766777888888888889999999999999999999998753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.92  E-value=1.3e-23  Score=153.22  Aligned_cols=133  Identities=32%  Similarity=0.506  Sum_probs=122.0

Q ss_pred             CCCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEE
Q 043745            3 QPRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIM   79 (174)
Q Consensus         3 ~pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~pii   79 (174)
                      .||++  +.+.+.+++..+.+.|+||+|++.|..+...++...|++++||+++++.||+.+..++..|.+... ..+|++
T Consensus        33 ~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~Piv  112 (196)
T KOG0395|consen   33 DPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPII  112 (196)
T ss_pred             CCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEE
Confidence            37777  677889999999999999999999999999999999999999999999999999999999844333 568999


Q ss_pred             EEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745           80 MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus        80 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                      +||||.|+...+.+..++++.++..++++|+|+||+.+.+++++|..+++.+....
T Consensus       113 lVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~~~  168 (196)
T KOG0395|consen  113 LVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELVREIRLPR  168 (196)
T ss_pred             EEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHHHHHHhhh
Confidence            99999999988999999999999999999999999999999999999999888733

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.92  E-value=1.2e-23  Score=148.20  Aligned_cols=121  Identities=34%  Similarity=0.581  Sum_probs=107.1

Q ss_pred             eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCC
Q 043745           10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLK   88 (174)
Q Consensus        10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~   88 (174)
                      +.+.+++..+.+.+||++|+++|..++..+++++|++++|||+++.++|+.+..|+..+..... .++|+++|+||+|+.
T Consensus        40 ~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~  119 (162)
T cd04138          40 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLA  119 (162)
T ss_pred             EEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence            3456788888899999999999999999999999999999999999999999999888876543 478999999999997


Q ss_pred             CccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           89 HLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      + +.+...+...++..++++++++||+++.|++++|+++++.+
T Consensus       120 ~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  161 (162)
T cd04138         120 A-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI  161 (162)
T ss_pred             c-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence            6 45667788888888899999999999999999999998654

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04116 Rab9 Rab9 subfamily

Probab=99.92  E-value=1e-23  Score=150.42  Aligned_cols=120  Identities=40%  Similarity=0.719  Sum_probs=107.0

Q ss_pred             eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC----CCCeEEEEEeCC
Q 043745           10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD----SNIVIMMIGNKT   85 (174)
Q Consensus        10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~   85 (174)
                      +.+.+++..+.++|||++|+++|..++..+++++|++++|||++++++++.+..|+..+.....    .++|+++|+||.
T Consensus        45 ~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~  124 (170)
T cd04116          45 KDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKN  124 (170)
T ss_pred             EEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECc
Confidence            4566789999999999999999999999999999999999999999999999999988765432    468999999999


Q ss_pred             CCCCccCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHH
Q 043745           86 DLKHLRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        86 Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      |+. .+.+..+++++++++++ .+++++||+++.|+.++|+++++.
T Consensus       125 Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~  169 (170)
T cd04116         125 DIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR  169 (170)
T ss_pred             ccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence            997 36677889999999888 479999999999999999999865

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.92  E-value=1.3e-23  Score=149.70  Aligned_cols=120  Identities=33%  Similarity=0.635  Sum_probs=104.4

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      .+..++..+.+.+|||+|++.+..++..++..+|++|+|||+++.+++..+..|+..+..... ++|+++|+||+|+.. 
T Consensus        41 ~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-  118 (166)
T cd00877          41 DFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-  118 (166)
T ss_pred             EEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-
Confidence            345577889999999999999999999999999999999999999999999999999987765 799999999999974 


Q ss_pred             cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      +.+. .+...++...+++++++||+++.|++++|++|++.+.+
T Consensus       119 ~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~  160 (166)
T cd00877         119 RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG  160 (166)
T ss_pred             ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence            3333 34456677777899999999999999999999988864

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.92  E-value=1.1e-23  Score=149.13  Aligned_cols=118  Identities=19%  Similarity=0.329  Sum_probs=102.6

Q ss_pred             ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCC
Q 043745            8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTD   86 (174)
Q Consensus         8 ~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~D   86 (174)
                      ..+.+.+++..+.+.+||++|++.     ..+++++|++++|||+++++||+.+..|+..+..... .++|+++|+||.|
T Consensus        36 ~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~D  110 (158)
T cd04103          36 FKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDA  110 (158)
T ss_pred             eEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHH
Confidence            445678899999999999999975     3467889999999999999999999999999977653 5789999999999


Q ss_pred             CC--CccCCCHHHHHHHHHHh-CCcEEEEeccCCCCHHHHHHHHHHH
Q 043745           87 LK--HLRAVATEDAQSYAERE-GLSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        87 l~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      +.  ..+.+..++++.++++. ++.|++|||+++.|++++|+.+++.
T Consensus       111 l~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~  157 (158)
T cd04103         111 ISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK  157 (158)
T ss_pred             hhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence            85  34678888899999876 4899999999999999999998864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04123 Rab21 Rab21 subfamily

Probab=99.92  E-value=1.7e-23  Score=147.42  Aligned_cols=121  Identities=40%  Similarity=0.755  Sum_probs=109.5

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      .+.+.+..+.+.+||++|++.+..++..+++++|++++|||+++.++++.+..|+..+......++|+++++||+|+...
T Consensus        41 ~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~  120 (162)
T cd04123          41 TVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ  120 (162)
T ss_pred             EEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence            45567778899999999999999999999999999999999999999999999999987776557999999999999876


Q ss_pred             cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      +.+..++..+++...+..++++||+++.|++++|+++.+.+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~~  161 (162)
T cd04123         121 RVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM  161 (162)
T ss_pred             cCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            77778888888888999999999999999999999998764

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.92  E-value=2.2e-24  Score=154.92  Aligned_cols=131  Identities=31%  Similarity=0.580  Sum_probs=117.5

Q ss_pred             CCcc--ceeEEEEC-CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEE
Q 043745            4 PRLG--KLCDFQVE-GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHADSNIVIM   79 (174)
Q Consensus         4 pt~g--~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~pii   79 (174)
                      ||+-  ++..+.++ |+.+.+.+|||+||++|..+++..|.++|+|+++|++.+++||.++ .+|+.++.++++ ++|+|
T Consensus        35 PTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp-~vpii  113 (198)
T KOG0393|consen   35 PTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCP-NVPII  113 (198)
T ss_pred             CeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCC-CCCEE
Confidence            5554  55677885 9999999999999999999999999999999999999999999998 689999999996 89999


Q ss_pred             EEEeCCCCCCc------------cCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745           80 MIGNKTDLKHL------------RAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus        80 lv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                      |||+|.||..+            ..+..+++.+++++.| ..|+||||+++.|+.++|+..++.++...
T Consensus       114 LVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~~  182 (198)
T KOG0393|consen  114 LVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAALRPP  182 (198)
T ss_pred             EEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhccc
Confidence            99999999632            3678899999999999 68999999999999999999999987743

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.92  E-value=2.1e-23  Score=149.00  Aligned_cols=122  Identities=35%  Similarity=0.667  Sum_probs=109.2

Q ss_pred             eEEEECCeEEEEEEEeCCCchhhh-hhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCC
Q 043745           10 CDFQVEGRTIKAQIWDTAGQERYR-AITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDL   87 (174)
Q Consensus        10 ~~~~~~~~~~~l~l~D~~G~~~~~-~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl   87 (174)
                      +.+.+++..+.+.+||++|+++|. .++..+++++|++++|||++++++|..+..|+..+..... .++|+++|+||+|+
T Consensus        42 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  121 (170)
T cd04115          42 RTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDL  121 (170)
T ss_pred             EEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            355678888999999999999987 5789999999999999999999999999999998876543 57999999999999


Q ss_pred             CCccCCCHHHHHHHHHHhCCcEEEEeccC---CCCHHHHHHHHHHHH
Q 043745           88 KHLRAVATEDAQSYAEREGLSFIETSALE---AINVEKAFQTILSEI  131 (174)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~v~~~l~~~i  131 (174)
                      ...+.+..++.++++...+++++++||++   +.+++++|..+++.+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         122 REQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             hhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence            88788888899999999999999999999   889999999998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.92  E-value=3.7e-23  Score=146.28  Aligned_cols=129  Identities=45%  Similarity=0.793  Sum_probs=115.6

Q ss_pred             CCCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE
Q 043745            3 QPRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM   79 (174)
Q Consensus         3 ~pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii   79 (174)
                      .||.|   .++.+.+++..+.+.+||++|+++|...+..+++++|+++||||+++.+++..+..|+..+.......+|++
T Consensus        31 ~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii  110 (163)
T cd01860          31 ESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIA  110 (163)
T ss_pred             CCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEE
Confidence            35666   245778899999999999999999999999999999999999999999999999999999877765679999


Q ss_pred             EEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           80 MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        80 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      +++||+|+...+....++...++..++++++++||+++.|++++|+++++.+
T Consensus       111 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd01860         111 LVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKKL  162 (163)
T ss_pred             EEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            9999999986667788888899999999999999999999999999999875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04177 RSR1 RSR1 subgroup

Probab=99.92  E-value=3e-23  Score=147.88  Aligned_cols=123  Identities=32%  Similarity=0.549  Sum_probs=109.7

Q ss_pred             eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCC
Q 043745           10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLK   88 (174)
Q Consensus        10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~   88 (174)
                      +.+.+++..+.+++|||+|+++|..+++.+++.++++++|||++++++++.+..|...+..... .+.|+++++||.|+.
T Consensus        40 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~  119 (168)
T cd04177          40 KQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLE  119 (168)
T ss_pred             EEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcc
Confidence            3456788889999999999999999999999999999999999999999999999888865432 579999999999998


Q ss_pred             CccCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           89 HLRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      +.+.+..++...+++..+ ++++++||+++.|++++|++++.+++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~~  164 (168)
T cd04177         120 DDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII  164 (168)
T ss_pred             ccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            777777888888888888 89999999999999999999998664

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.92  E-value=3.1e-23  Score=156.46  Aligned_cols=128  Identities=21%  Similarity=0.376  Sum_probs=110.3

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhh---------c
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH---------A   72 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~---------~   72 (174)
                      ||++  ..+.+.+++..+.++||||+|++.|..++..++..+|++|+|||+++.++|+.+..|+..+...         .
T Consensus        31 pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~  110 (247)
T cd04143          31 PTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKE  110 (247)
T ss_pred             CChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhccccccccc
Confidence            5665  4456778899999999999999999999999999999999999999999999999999888653         2


Q ss_pred             CCCCeEEEEEeCCCCCCccCCCHHHHHHHHHH-hCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAER-EGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        73 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      ..++|+|+|+||+|+...+++..+++..++.. .++.++++||+++.|++++|++++..+
T Consensus       111 ~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~  170 (247)
T cd04143         111 NVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLA  170 (247)
T ss_pred             CCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            24789999999999986667778888777754 467899999999999999999999864

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.91  E-value=4.9e-23  Score=145.86  Aligned_cols=120  Identities=33%  Similarity=0.607  Sum_probs=106.2

Q ss_pred             EEEE-CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           11 DFQV-EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        11 ~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      .+.+ .+..+.+.+||++|++.+..++..+++++|++++|||+++.+++..+..|+..+.... .++|+++|+||+|+.+
T Consensus        43 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~  121 (164)
T cd04101          43 EVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLAD  121 (164)
T ss_pred             EEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc
Confidence            3444 3677999999999999999999999999999999999999999999999999987765 3689999999999977


Q ss_pred             ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      .+++...+.+.++..++++++++||+++.|++++|+.+++.+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  163 (164)
T cd04101         122 KAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLARAF  163 (164)
T ss_pred             ccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence            667777777788888889999999999999999999998764

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.91  E-value=2.5e-23  Score=148.99  Aligned_cols=119  Identities=31%  Similarity=0.611  Sum_probs=105.0

Q ss_pred             eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745           10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus        10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      ..+.+++..+.+++||++|++.|..++..+++++|++|+|||++++++|+.+. .|+..+.... .++|+++++||.|+.
T Consensus        39 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~  117 (173)
T cd04130          39 VVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLR  117 (173)
T ss_pred             EEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhc
Confidence            45677888899999999999999999999999999999999999999999984 6988887543 368999999999985


Q ss_pred             C------------ccCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHH
Q 043745           89 H------------LRAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILS  129 (174)
Q Consensus        89 ~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~  129 (174)
                      .            .+.+..+++..+++..+. +++++||+++.|++++|+.++.
T Consensus       118 ~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~~  171 (173)
T cd04130         118 TDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAIL  171 (173)
T ss_pred             cChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence            3            356788889999999987 8999999999999999998864

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.91  E-value=3.6e-23  Score=146.95  Aligned_cols=123  Identities=32%  Similarity=0.499  Sum_probs=107.1

Q ss_pred             eEEEECCeEEEEEEEeCCCchh-hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCeEEEEEeCCC
Q 043745           10 CDFQVEGRTIKAQIWDTAGQER-YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA--DSNIVIMMIGNKTD   86 (174)
Q Consensus        10 ~~~~~~~~~~~l~l~D~~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~D   86 (174)
                      +.+.+++..+.++|||++|++. +......+++.+|++|+|||++++++|+.+..|+..+....  ..++|+++|+||+|
T Consensus        38 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~D  117 (165)
T cd04146          38 RQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKAD  117 (165)
T ss_pred             EEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCc
Confidence            3566888889999999999985 34567788999999999999999999999999988887654  24799999999999


Q ss_pred             CCCccCCCHHHHHHHHHHhCCcEEEEeccCC-CCHHHHHHHHHHHHH
Q 043745           87 LKHLRAVATEDAQSYAEREGLSFIETSALEA-INVEKAFQTILSEIY  132 (174)
Q Consensus        87 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~i~~v~~~l~~~i~  132 (174)
                      +...+.+..++++.++..++.+++++||+++ .|++++|+++++.+.
T Consensus       118 l~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~~  164 (165)
T cd04146         118 LLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELCREVR  164 (165)
T ss_pred             hHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence            9776778888899999999999999999999 599999999988654

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.91  E-value=8.1e-23  Score=144.38  Aligned_cols=122  Identities=36%  Similarity=0.593  Sum_probs=108.7

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCCC
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLKH   89 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~   89 (174)
                      .+.+++..+.+.+||++|++.|...+..+++.+|++++|||++++.+|..+..|+..+..... .++|+++|+||+|+.+
T Consensus        40 ~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~  119 (164)
T cd04139          40 KVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED  119 (164)
T ss_pred             EEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence            456788889999999999999999999999999999999999999999999999888876532 4799999999999976


Q ss_pred             ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      .+.....+...++..++++++++||+++.|++++|+++.+.+.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  162 (164)
T cd04139         120 KRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVREIR  162 (164)
T ss_pred             ccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            5566777888888888999999999999999999999988764

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04142 RRP22 RRP22 subfamily

Probab=99.91  E-value=8.1e-23  Score=149.64  Aligned_cols=125  Identities=20%  Similarity=0.260  Sum_probs=103.4

Q ss_pred             EEEECCeEEEEEEEeCCCchhhh--------hhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc---CCCCeEE
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYR--------AITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA---DSNIVIM   79 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~--------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~pii   79 (174)
                      .+.+++..+.++||||+|.+.|.        .....+++.+|++|||||++++++|+.+..|+..+....   ..++|++
T Consensus        41 ~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~pii  120 (198)
T cd04142          41 AVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIV  120 (198)
T ss_pred             EEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEE
Confidence            45678888999999999976542        123456789999999999999999999999998887653   3579999


Q ss_pred             EEEeCCCCCCccCCCHHHHHHHHH-HhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745           80 MIGNKTDLKHLRAVATEDAQSYAE-REGLSFIETSALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus        80 lv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                      +|+||+|+...+.+..++++.++. .++++++++||++|.|++++|+.+++.++.+.
T Consensus       121 ivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~~~~  177 (198)
T cd04142         121 VVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISATTRG  177 (198)
T ss_pred             EEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHhhccC
Confidence            999999997766677777777765 56899999999999999999999998887543

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04148 RGK RGK subfamily

Probab=99.91  E-value=1.5e-22  Score=150.58  Aligned_cols=130  Identities=26%  Similarity=0.301  Sum_probs=111.2

Q ss_pred             ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhc-cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCC
Q 043745            8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYR-GALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKT   85 (174)
Q Consensus         8 ~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~-~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~   85 (174)
                      ..+++.+++..+.+.|||++|++  ......++. ++|++++|||++++++|+.+..|+..+..... .++|+|+|+||+
T Consensus        39 ~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~  116 (221)
T cd04148          39 YERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKS  116 (221)
T ss_pred             eEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECh
Confidence            34567788889999999999998  334455667 99999999999999999999999998876543 479999999999


Q ss_pred             CCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q 043745           86 DLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKS  139 (174)
Q Consensus        86 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~  139 (174)
                      |+...+.+..++++.++..++++++++||+++.|++++|+++++.+........
T Consensus       117 Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~~~~~~~~  170 (221)
T cd04148         117 DLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIRLRRDSKE  170 (221)
T ss_pred             hccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHhhhcccc
Confidence            998777788888889999889999999999999999999999999886655443

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.90  E-value=6.3e-23  Score=148.23  Aligned_cols=124  Identities=20%  Similarity=0.359  Sum_probs=97.4

Q ss_pred             CCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEE
Q 043745            4 PRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMIG   82 (174)
Q Consensus         4 pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~   82 (174)
                      ||+|... ..++...+.+++||++|++.++.+|..+|+++|++|||||+++.+++..+..|+..+.... ..+.|++|++
T Consensus        47 pt~g~~~-~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~  125 (181)
T PLN00223         47 PTIGFNV-ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA  125 (181)
T ss_pred             CCcceeE-EEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEE
Confidence            7777332 1344556889999999999999999999999999999999999999999887777764322 2478999999


Q ss_pred             eCCCCCCccCCCHHHHHHHHHHhCC--------cEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           83 NKTDLKHLRAVATEDAQSYAEREGL--------SFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        83 nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      ||+|+...  ...++   +...+++        .++++||++|+|++++|++|++.+..
T Consensus       126 NK~Dl~~~--~~~~~---~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~  179 (181)
T PLN00223        126 NKQDLPNA--MNAAE---ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN  179 (181)
T ss_pred             ECCCCCCC--CCHHH---HHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence            99999753  33333   3333333        35689999999999999999988765

>cd04114 Rab30 Rab30 subfamily

Probab=99.90  E-value=4.2e-22  Score=141.73  Aligned_cols=121  Identities=39%  Similarity=0.742  Sum_probs=108.2

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      .+.+++..+.+.+||++|++.|...+..++..+|++++|||+++.+++..+..|+..+......++|+++|+||+|+...
T Consensus        48 ~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~  127 (169)
T cd04114          48 TVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAER  127 (169)
T ss_pred             EEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence            45678888899999999999999999999999999999999999999999999999887766557999999999999876


Q ss_pred             cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      +++..+..+.+.......++++||+++.|++++|+++.+.+
T Consensus       128 ~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~  168 (169)
T cd04114         128 REVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL  168 (169)
T ss_pred             cccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence            77777777888877778999999999999999999998764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04135 Tc10 TC10 subfamily

Probab=99.90  E-value=1.8e-22  Score=144.31  Aligned_cols=120  Identities=28%  Similarity=0.529  Sum_probs=105.7

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      .+.+++..+.+.+||++|++.|...+..++.++|++++|||++++++|+.+. .|+..+... ..+.|+++++||+|+.+
T Consensus        40 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~  118 (174)
T cd04135          40 SVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRD  118 (174)
T ss_pred             EEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhc
Confidence            5567888889999999999999999999999999999999999999999985 688887665 35799999999999854


Q ss_pred             c------------cCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHH
Q 043745           90 L------------RAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        90 ~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      .            +.++.++++.+++.++. +++++||+++.|++++|+.+++.+
T Consensus       119 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~  173 (174)
T cd04135         119 DPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI  173 (174)
T ss_pred             ChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence            2            35777888999999985 799999999999999999998876

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04129 Rho2 Rho2 subfamily

Probab=99.90  E-value=2.8e-22  Score=145.47  Aligned_cols=125  Identities=30%  Similarity=0.573  Sum_probs=107.9

Q ss_pred             eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745           10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus        10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      ..+.+++..+.+.+||++|++.|...+..++.++|+++++||+++.++|+.+. .|+..+....+ ++|+++|+||+|+.
T Consensus        40 ~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~  118 (187)
T cd04129          40 TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLR  118 (187)
T ss_pred             EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhh
Confidence            35567888888999999999999888878889999999999999999999996 69998876654 69999999999985


Q ss_pred             C----------ccCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745           89 H----------LRAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus        89 ~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                      +          .+.+..++.+.+++.++. +++++||+++.|++++|+++.+.++..+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~  176 (187)
T cd04129         119 QDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALLVR  176 (187)
T ss_pred             hCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhccc
Confidence            4          245666788899999985 8999999999999999999998876654

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd01863 Rab18 Rab18 subfamily

Probab=99.90  E-value=5e-22  Score=140.27  Aligned_cols=119  Identities=45%  Similarity=0.824  Sum_probs=106.4

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCCC
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLKH   89 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~   89 (174)
                      .+.+++..+.+.|||++|++.|...+..+++++|++++|||+++.++|+.+..|+..+..+.. .+.|+++++||+|+..
T Consensus        41 ~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~  120 (161)
T cd01863          41 TLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN  120 (161)
T ss_pred             EEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc
Confidence            455678889999999999999999999999999999999999999999999999998877653 5799999999999974


Q ss_pred             ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745           90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                       .....++...++...+++++++||+++.|++++++++++.
T Consensus       121 -~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~  160 (161)
T cd01863         121 -REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK  160 (161)
T ss_pred             -cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence             4566778888999899999999999999999999998875

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd01862 Rab7 Rab7 subfamily

Probab=99.90  E-value=1e-21  Score=139.96  Aligned_cols=125  Identities=43%  Similarity=0.736  Sum_probs=109.4

Q ss_pred             eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC----CCCeEEEEEeCC
Q 043745           10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD----SNIVIMMIGNKT   85 (174)
Q Consensus        10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~   85 (174)
                      +.+.+++..+.+.+||++|++.|..++..+++++|++|++||+++++++..+..|...+.....    .++|+++|+||+
T Consensus        40 ~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~  119 (172)
T cd01862          40 KEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKI  119 (172)
T ss_pred             EEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECc
Confidence            3556788889999999999999999999999999999999999999999999889887654432    368999999999


Q ss_pred             CCCCccCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           86 DLKHLRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        86 Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      |+...+....++.+.+.+..+ .+++++||+++.|++++|+++.+.+.+.
T Consensus       120 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~  169 (172)
T cd01862         120 DLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKALEQ  169 (172)
T ss_pred             ccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            998656667788888888887 7999999999999999999999988775

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd00154 Rab Rab family

Probab=99.90  E-value=3.9e-22  Score=139.49  Aligned_cols=118  Identities=54%  Similarity=0.936  Sum_probs=106.0

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      .+.+++..+.+.+||++|+..+...+..+++++|++++|||+++++++..+..|+..+......+.|+++++||+|+...
T Consensus        41 ~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  120 (159)
T cd00154          41 TIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQ  120 (159)
T ss_pred             EEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccccc
Confidence            44556677889999999999999999999999999999999999999999999999988776457999999999999755


Q ss_pred             cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043745           91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTIL  128 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~  128 (174)
                      .....++.+.++...+.+++++||+++.|++++|+++.
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154         121 RQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             ccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            66778889999998899999999999999999999886

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd00876 Ras Ras family

Probab=99.89  E-value=5.3e-22  Score=139.53  Aligned_cols=120  Identities=36%  Similarity=0.613  Sum_probs=108.6

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCCC
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLKH   89 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~   89 (174)
                      .+.+++..+.+++||++|++.+...+..+++.+|++++|||+++.+++..+..|+..+..... ...|+++++||+|+..
T Consensus        39 ~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  118 (160)
T cd00876          39 TIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN  118 (160)
T ss_pred             EEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc
Confidence            456677788999999999999999999999999999999999999999999999888877654 5799999999999987


Q ss_pred             ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745           90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      .+.+..+++..++...+.+++++||+++.|++++|+++++.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876         119 ERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             cceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            67778888999999888999999999999999999999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04149 Arf6 Arf6 subfamily

Probab=99.89  E-value=1.6e-22  Score=144.46  Aligned_cols=123  Identities=20%  Similarity=0.355  Sum_probs=96.3

Q ss_pred             CCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEE
Q 043745            4 PRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMIG   82 (174)
Q Consensus         4 pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~   82 (174)
                      ||+|.... .+....+.+++|||+|+++|..++..+|+++|++|||||+++..++..+..|+..+.... ..++|++||+
T Consensus        39 ~t~g~~~~-~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~  117 (168)
T cd04149          39 PTVGFNVE-TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFA  117 (168)
T ss_pred             CCcccceE-EEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEE
Confidence            56662221 233456889999999999999999999999999999999999999999988877765432 2468999999


Q ss_pred             eCCCCCCccCCCHHHHHHHHHH-----hCCcEEEEeccCCCCHHHHHHHHHH
Q 043745           83 NKTDLKHLRAVATEDAQSYAER-----EGLSFIETSALEAINVEKAFQTILS  129 (174)
Q Consensus        83 nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~v~~~l~~  129 (174)
                      ||+|+.+  .+..+++++++..     ..+.++++||++|.|++++|++|.+
T Consensus       118 NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~  167 (168)
T cd04149         118 NKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS  167 (168)
T ss_pred             ECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence            9999975  2455666665421     2346899999999999999999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd01892 Miro2 Miro2 subfamily

Probab=99.89  E-value=3.5e-22  Score=142.74  Aligned_cols=127  Identities=17%  Similarity=0.206  Sum_probs=107.5

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||+|   ..+.+.+++..+.+.+||++|++.+..++..+++++|++++|||++++++|+.+..|+..+...  .++|+++
T Consensus        36 ~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~ii  113 (169)
T cd01892          36 PTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLF  113 (169)
T ss_pred             CccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEE
Confidence            6777   2345678898899999999999999999999999999999999999999999999998876432  3689999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      |+||.|+.+.+.+...+..++++.+++ .++++||+++.|++++|+.+++.+.
T Consensus       114 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~  166 (169)
T cd01892         114 VAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQ  166 (169)
T ss_pred             EEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHhh
Confidence            999999976555444566778888887 4799999999999999999998765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.89  E-value=8.5e-22  Score=140.98  Aligned_cols=127  Identities=28%  Similarity=0.573  Sum_probs=106.3

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piil   80 (174)
                      ||++  ....+.+++..+.+.+|||+|++.|..++..++.++|++++|||+++.++|+.+. .|+..+.+... ++|+++
T Consensus        32 ~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~-~~piil  110 (175)
T cd01870          32 PTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIIL  110 (175)
T ss_pred             CccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEE
Confidence            4554  2345677888899999999999999999989999999999999999999999985 68888776543 799999


Q ss_pred             EEeCCCCCCc------------cCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHL------------RAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        81 v~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      |+||.|+.+.            ..+...++++++...+. +++++||++|.|++++|+++.+.+
T Consensus       111 v~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         111 VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             EeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence            9999998642            23456778888888874 799999999999999999998764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.89  E-value=6.4e-23  Score=145.90  Aligned_cols=124  Identities=18%  Similarity=0.290  Sum_probs=101.4

Q ss_pred             CCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEe
Q 043745            4 PRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGN   83 (174)
Q Consensus         4 pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~n   83 (174)
                      ||+|.. ...+++..+.+.+||++|++.|+.++..+++++|++++|||.++.+++..++.|+..+.... .++|+++|+|
T Consensus        30 pt~g~~-~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~-~~~piilv~N  107 (164)
T cd04162          30 PTTGFN-SVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP-PDLPLVVLAN  107 (164)
T ss_pred             ccCCcc-eEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEe
Confidence            666643 24566677899999999999999999999999999999999999999999999988886544 4799999999


Q ss_pred             CCCCCCccCCCH----HHHHHHHHHhCCcEEEEeccC------CCCHHHHHHHHHH
Q 043745           84 KTDLKHLRAVAT----EDAQSYAEREGLSFIETSALE------AINVEKAFQTILS  129 (174)
Q Consensus        84 K~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~~i~~v~~~l~~  129 (174)
                      |.|+...+.+..    .++..++++.++.++++||++      ++|++++|+.++.
T Consensus       108 K~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~  163 (164)
T cd04162         108 KQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN  163 (164)
T ss_pred             CcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence            999976554322    224555666778899999988      9999999998763

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.89  E-value=3.2e-21  Score=141.15  Aligned_cols=123  Identities=30%  Similarity=0.439  Sum_probs=103.5

Q ss_pred             eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCC
Q 043745           10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLK   88 (174)
Q Consensus        10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~   88 (174)
                      +.+.+++..+.++|||++|++.|..++..++.++|++|||||+++..+++.+..|+..+..... .++|+++|+||+|+.
T Consensus        38 ~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~  117 (198)
T cd04147          38 KEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSL  117 (198)
T ss_pred             EEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccc
Confidence            3566778788999999999999999999999999999999999999999999999888876544 479999999999996


Q ss_pred             C-ccCCCHHHHHHHHH-HhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           89 H-LRAVATEDAQSYAE-REGLSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        89 ~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      . .+.+..++...... ..+.+++++||+++.|++++|+++++.+.
T Consensus       118 ~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  163 (198)
T cd04147         118 EEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQAN  163 (198)
T ss_pred             cccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence            5 34455545444443 45678999999999999999999998765

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04158 ARD1 ARD1 subfamily

Probab=99.89  E-value=5.8e-22  Score=141.52  Aligned_cols=128  Identities=17%  Similarity=0.293  Sum_probs=101.4

Q ss_pred             CCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEE
Q 043745            4 PRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMIG   82 (174)
Q Consensus         4 pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~   82 (174)
                      ||+|... ..++...+.+++||++|++.+...+..+++++|+++||||+++++++.++..|+..+.... ..+.|+++++
T Consensus        29 ~T~~~~~-~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~  107 (169)
T cd04158          29 PTIGFNV-ETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFA  107 (169)
T ss_pred             CcCceeE-EEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEE
Confidence            5665221 1234456789999999999999999999999999999999999999999999988876432 2458999999


Q ss_pred             eCCCCCCccCCCHHHHHHHHHHhC------CcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           83 NKTDLKHLRAVATEDAQSYAEREG------LSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        83 nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      ||+|+..  .+..++++.++...+      +.++++||++|.|++++|+++++.+...
T Consensus       108 NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~~  163 (169)
T cd04158         108 NKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAA  163 (169)
T ss_pred             eCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhhc
Confidence            9999964  356676766654222      3688999999999999999998876553

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.89  E-value=1.2e-22  Score=143.75  Aligned_cols=123  Identities=18%  Similarity=0.353  Sum_probs=92.6

Q ss_pred             CCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhh-cCCCCeEEEEE
Q 043745            4 PRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH-ADSNIVIMMIG   82 (174)
Q Consensus         4 pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~   82 (174)
                      ||+|.... .+....+.+.|||++|+++|..++..+++++|++|||||+++.+++..+.+|+..+... ...+.|++|++
T Consensus        30 pt~g~~~~-~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~  108 (159)
T cd04150          30 PTIGFNVE-TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFA  108 (159)
T ss_pred             CCCCcceE-EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEE
Confidence            66663221 23334688999999999999999999999999999999999999999998877776432 22468999999


Q ss_pred             eCCCCCCccCCCHHHH-HHHH----HHhCCcEEEEeccCCCCHHHHHHHHHH
Q 043745           83 NKTDLKHLRAVATEDA-QSYA----EREGLSFIETSALEAINVEKAFQTILS  129 (174)
Q Consensus        83 nK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~~~i~~v~~~l~~  129 (174)
                      ||+|+.+.  ...++. ..+.    ...++.++++||++|+|++++|++|.+
T Consensus       109 NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~  158 (159)
T cd04150         109 NKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN  158 (159)
T ss_pred             ECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence            99999652  223232 2221    112345789999999999999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.88  E-value=1.2e-21  Score=141.74  Aligned_cols=129  Identities=19%  Similarity=0.355  Sum_probs=97.0

Q ss_pred             CCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhh-cCCCCeEEEEE
Q 043745            4 PRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH-ADSNIVIMMIG   82 (174)
Q Consensus         4 pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~   82 (174)
                      ||+|.... .++...+.+++||++|++.++.++..+++++|++|||||+++++++..+..|+..+... ...+.|++|++
T Consensus        47 ~T~~~~~~-~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~  125 (182)
T PTZ00133         47 PTIGFNVE-TVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFA  125 (182)
T ss_pred             CccccceE-EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEE
Confidence            56662221 23445688999999999999999999999999999999999999999988777766432 12368999999


Q ss_pred             eCCCCCCccCCCHHHHHHHH-----HHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745           83 NKTDLKHLRAVATEDAQSYA-----EREGLSFIETSALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus        83 nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                      ||.|+.+.  ....+.....     ....+.++++||++|.|++++|++|.+.+.+.|
T Consensus       126 NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~~  181 (182)
T PTZ00133        126 NKQDLPNA--MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKKSM  181 (182)
T ss_pred             eCCCCCCC--CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHHhc
Confidence            99999652  2233322211     111235678999999999999999999887765

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.88  E-value=2.2e-22  Score=144.62  Aligned_cols=125  Identities=18%  Similarity=0.331  Sum_probs=94.5

Q ss_pred             CCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEE
Q 043745            4 PRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMIG   82 (174)
Q Consensus         4 pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~   82 (174)
                      ||+|.... .+....+.++|||++|++.+..+|..+++++|++|||||++++++++.+..|+..+.... ..++|++||+
T Consensus        43 ~t~~~~~~-~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~  121 (175)
T smart00177       43 PTIGFNVE-TVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFA  121 (175)
T ss_pred             CccccceE-EEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEE
Confidence            66662211 222345789999999999999999999999999999999999999999988888775432 2468999999


Q ss_pred             eCCCCCCccCCCHHHHHHHHH-----HhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           83 NKTDLKHLRAVATEDAQSYAE-----REGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        83 nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      ||.|+.+.  ...++......     ...+.++++||++|.|++++|++|...+
T Consensus       122 NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~  173 (175)
T smart00177      122 NKQDLPDA--MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL  173 (175)
T ss_pred             eCcCcccC--CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            99999753  22333322211     1223577899999999999999998764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.88  E-value=8e-21  Score=136.67  Aligned_cols=127  Identities=35%  Similarity=0.533  Sum_probs=110.7

Q ss_pred             eeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCC
Q 043745            9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDL   87 (174)
Q Consensus         9 ~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl   87 (174)
                      ++.+.+++..+.+++||++|+++|...+..++..+++++++||+++.++++.+..|+..+..... .+.|+++++||+|+
T Consensus        39 ~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl  118 (180)
T cd04137          39 SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDL  118 (180)
T ss_pred             EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhh
Confidence            44566777788899999999999999999999999999999999999999999998888766432 46899999999999


Q ss_pred             CCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745           88 KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                      ...+.+..++...++..++.+++++||+++.|+.++|+++.+.+....
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~  166 (180)
T cd04137         119 HTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEIEKVE  166 (180)
T ss_pred             hhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            866667777788888888899999999999999999999998876543

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.88  E-value=4.7e-21  Score=138.60  Aligned_cols=122  Identities=17%  Similarity=0.332  Sum_probs=98.7

Q ss_pred             CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCCCccCC
Q 043745           15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLKHLRAV   93 (174)
Q Consensus        15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~   93 (174)
                      ++..+.+.+|||+|++++..+|..+++++|++++|||+++.+++..+..|+..+..... .+.|+++|+||+|+.+  .+
T Consensus        48 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~  125 (183)
T cd04152          48 NSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--AL  125 (183)
T ss_pred             CCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cC
Confidence            44678999999999999999999999999999999999999999998888887765432 4689999999999964  23


Q ss_pred             CHHHHHHHHH--Hh----CCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q 043745           94 ATEDAQSYAE--RE----GLSFIETSALEAINVEKAFQTILSEIYRIISKK  138 (174)
Q Consensus        94 ~~~~~~~~~~--~~----~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~  138 (174)
                      ..++...++.  ..    +++++++||+++.|++++|+++++.+...+...
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~~~~~~  176 (183)
T cd04152         126 SVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILKRRKML  176 (183)
T ss_pred             CHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHHHHhhh
Confidence            3444444432  11    246889999999999999999999987665443

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd01893 Miro1 Miro1 subfamily

Probab=99.88  E-value=2.2e-21  Score=138.00  Aligned_cols=121  Identities=27%  Similarity=0.370  Sum_probs=98.2

Q ss_pred             EEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        12 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      ..+++..+.+.+|||+|++.+...+..++..+|+++||||++++++|+.+. .|+..+..... +.|+++|+||+|+.+.
T Consensus        40 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~  118 (166)
T cd01893          40 ADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDG  118 (166)
T ss_pred             eeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhcccc
Confidence            356677889999999999998888888899999999999999999999985 68888776554 7999999999999764


Q ss_pred             cCC--CHHHHHHHHHHhC--CcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           91 RAV--ATEDAQSYAEREG--LSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        91 ~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      +..  ..+++..++..+.  ..++++||+++.|++++|+.+.+.+.+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~~~  165 (166)
T cd01893         119 SSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVLH  165 (166)
T ss_pred             cchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHhcC
Confidence            432  1233444444443  379999999999999999999887653

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd00157 Rho Rho (Ras homology) family

Probab=99.87  E-value=3.1e-21  Score=137.36  Aligned_cols=118  Identities=31%  Similarity=0.634  Sum_probs=101.2

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      .+.+++..+.+++||++|++.|...+..+++.+|++++|||+++.++|... ..|+..+..... +.|+++|+||+|+.+
T Consensus        40 ~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~  118 (171)
T cd00157          40 TVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTKIDLRD  118 (171)
T ss_pred             EEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEccHHhhh
Confidence            445678888999999999999988899999999999999999999999887 468887776554 799999999999965


Q ss_pred             cc-----------CCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHH
Q 043745           90 LR-----------AVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILS  129 (174)
Q Consensus        90 ~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~  129 (174)
                      ..           .+..++...++..++. +++++||+++.|++++|+++++
T Consensus       119 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         119 DENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             chhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence            43           3356777888888887 9999999999999999998875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04154 Arl2 Arl2 subfamily

Probab=99.87  E-value=6e-21  Score=136.67  Aligned_cols=122  Identities=22%  Similarity=0.369  Sum_probs=96.7

Q ss_pred             CCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhh-cCCCCeEEEE
Q 043745            4 PRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH-ADSNIVIMMI   81 (174)
Q Consensus         4 pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv   81 (174)
                      ||+| ..+.+.++  .+.+.+||++|++.++.++..+++++|++++|||++++.+|..+..|+..+... ...+.|+++|
T Consensus        44 ~t~g~~~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv  121 (173)
T cd04154          44 PTLGFQIKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLIL  121 (173)
T ss_pred             CccccceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEE
Confidence            5666 23334454  477899999999999999999999999999999999999999988888776543 2257999999


Q ss_pred             EeCCCCCCccCCCHHHHHHHHH-----HhCCcEEEEeccCCCCHHHHHHHHHH
Q 043745           82 GNKTDLKHLRAVATEDAQSYAE-----REGLSFIETSALEAINVEKAFQTILS  129 (174)
Q Consensus        82 ~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~v~~~l~~  129 (174)
                      +||+|+.+.  ...++...+..     ..+++++++||++|.|++++|++++.
T Consensus       122 ~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  172 (173)
T cd04154         122 ANKQDLPGA--LSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD  172 (173)
T ss_pred             EECcccccC--CCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence            999999753  24455555442     23568999999999999999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.86  E-value=4.3e-21  Score=136.83  Aligned_cols=125  Identities=23%  Similarity=0.326  Sum_probs=96.2

Q ss_pred             CCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEE
Q 043745            4 PRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIG   82 (174)
Q Consensus         4 pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~   82 (174)
                      ||+|... ..+....+.+++||++|++.++.+|..+++++|++|||||+++..++..+..|+..+..... .++|+++|+
T Consensus        29 ~t~g~~~-~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~  107 (167)
T cd04161          29 PTVGFTP-TKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLA  107 (167)
T ss_pred             CcccceE-EEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEE
Confidence            7777432 23333457899999999999999999999999999999999999999999999998865432 478999999


Q ss_pred             eCCCCCCccCCCH-HH---HHHHHHHhC--CcEEEEeccCC------CCHHHHHHHHHH
Q 043745           83 NKTDLKHLRAVAT-ED---AQSYAEREG--LSFIETSALEA------INVEKAFQTILS  129 (174)
Q Consensus        83 nK~Dl~~~~~~~~-~~---~~~~~~~~~--~~~~~~Sa~~~------~~i~~v~~~l~~  129 (174)
                      ||+|+++.+...+ .+   +..++++.+  +.++++||++|      .|+.+.|+||..
T Consensus       108 NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         108 NKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             eCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence            9999976442111 11   122332223  56788999998      899999999964

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.86  E-value=3.6e-20  Score=135.78  Aligned_cols=114  Identities=21%  Similarity=0.362  Sum_probs=93.2

Q ss_pred             CCcc---ceeEEEEC-----CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc---
Q 043745            4 PRLG---KLCDFQVE-----GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA---   72 (174)
Q Consensus         4 pt~g---~~~~~~~~-----~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~---   72 (174)
                      ||+|   ..+.+.++     +..+.++||||+|+++|..++..+|+++|++|+|||+++++||+.+..|+..+....   
T Consensus        31 ~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~  110 (202)
T cd04102          31 WTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFP  110 (202)
T ss_pred             cceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccc
Confidence            6777   23344553     567899999999999999999999999999999999999999999999999987631   


Q ss_pred             ----------------CCCCeEEEEEeCCCCCCccCCCHH----HHHHHHHHhCCcEEEEeccCC
Q 043745           73 ----------------DSNIVIMMIGNKTDLKHLRAVATE----DAQSYAEREGLSFIETSALEA  117 (174)
Q Consensus        73 ----------------~~~~piilv~nK~Dl~~~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~  117 (174)
                                      ..++|++||+||.|+.+.+.+...    ....++++.+++.++.++.+.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~  175 (202)
T cd04102         111 TGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTNG  175 (202)
T ss_pred             cccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHHHhcCCceEEEecCCc
Confidence                            246999999999999765555443    245678889999888887755

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.86  E-value=1e-20  Score=135.74  Aligned_cols=110  Identities=25%  Similarity=0.374  Sum_probs=88.3

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCCCccCCCHH
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLKHLRAVATE   96 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~   96 (174)
                      .+.+.+||++|++.+...+..+++++|+++||||+++.+++..+..|+..+..... .++|+++++||+|+.+.  ...+
T Consensus        58 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~  135 (174)
T cd04153          58 NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPA  135 (174)
T ss_pred             CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHH
Confidence            57899999999999999999999999999999999999999888777776654332 46899999999999752  2333


Q ss_pred             HH-HHHH----HHhCCcEEEEeccCCCCHHHHHHHHHH
Q 043745           97 DA-QSYA----EREGLSFIETSALEAINVEKAFQTILS  129 (174)
Q Consensus        97 ~~-~~~~----~~~~~~~~~~Sa~~~~~i~~v~~~l~~  129 (174)
                      +. +.+.    ...+++++++||+++.|++++|++|.+
T Consensus       136 ~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~  173 (174)
T cd04153         136 EISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS  173 (174)
T ss_pred             HHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence            32 2221    223467899999999999999999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04157 Arl6 Arl6 subfamily

Probab=99.85  E-value=1.6e-20  Score=132.56  Aligned_cols=112  Identities=20%  Similarity=0.322  Sum_probs=88.9

Q ss_pred             CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc---CCCCeEEEEEeCCCCCCccC
Q 043745           16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA---DSNIVIMMIGNKTDLKHLRA   92 (174)
Q Consensus        16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~   92 (174)
                      ...+.+++|||+|+++|..++..+++++|++|||||+++..++..+..|+..+....   ..++|+++|+||+|+.+.. 
T Consensus        42 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~-  120 (162)
T cd04157          42 KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL-  120 (162)
T ss_pred             ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC-
Confidence            445789999999999999999999999999999999999999998888888775432   2479999999999997532 


Q ss_pred             CCHHHHHHHHH-----HhCCcEEEEeccCCCCHHHHHHHHHH
Q 043745           93 VATEDAQSYAE-----REGLSFIETSALEAINVEKAFQTILS  129 (174)
Q Consensus        93 ~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~v~~~l~~  129 (174)
                       ..++......     ...+.++++||+++.|++++|++|.+
T Consensus       121 -~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157         121 -TAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA  161 (162)
T ss_pred             -CHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence             2223222211     11245899999999999999999865

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.85  E-value=8.9e-20  Score=131.11  Aligned_cols=124  Identities=27%  Similarity=0.527  Sum_probs=99.8

Q ss_pred             CCccce-eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEE
Q 043745            4 PRLGKL-CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMI   81 (174)
Q Consensus         4 pt~g~~-~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv   81 (174)
                      ||+|.. ..+.+++  +.+.+||.+|+..++..|+.|++++|++|||+|.++.+.+.+....+..+..... .++|++++
T Consensus        44 pT~g~~~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl  121 (175)
T PF00025_consen   44 PTIGFNIEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILIL  121 (175)
T ss_dssp             EESSEEEEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEE
T ss_pred             cccccccceeeeCc--EEEEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEE
Confidence            777733 3445555  7789999999999999999999999999999999999999988877777655432 57999999


Q ss_pred             EeCCCCCCccCCCHHHHHHHHH------HhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           82 GNKTDLKHLRAVATEDAQSYAE------REGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        82 ~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      +||+|+++  ....++......      ...+.++.+||.+|+|+.+.|+||.+.+
T Consensus       122 ~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  122 ANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             EESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             eccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence            99999975  345555554432      2235689999999999999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.84  E-value=2.5e-20  Score=131.44  Aligned_cols=112  Identities=20%  Similarity=0.388  Sum_probs=89.0

Q ss_pred             CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCCCccCCC
Q 043745           16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLKHLRAVA   94 (174)
Q Consensus        16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~   94 (174)
                      +..+.+.+||++|++.+...+..++.++|++++|||+++..++..+..|+..+..... .+.|+++|+||+|+...  ..
T Consensus        41 ~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~  118 (160)
T cd04156          41 EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LT  118 (160)
T ss_pred             CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cC
Confidence            3457899999999999999999999999999999999999999999888887754322 47999999999999642  22


Q ss_pred             HHHHHHH------HHHhCCcEEEEeccCCCCHHHHHHHHHH
Q 043745           95 TEDAQSY------AEREGLSFIETSALEAINVEKAFQTILS  129 (174)
Q Consensus        95 ~~~~~~~------~~~~~~~~~~~Sa~~~~~i~~v~~~l~~  129 (174)
                      ..+....      +...+++++++||++++|++++|++|.+
T Consensus       119 ~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156         119 AEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             HHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence            2232221      2223457899999999999999998864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04151 Arl1 Arl1 subfamily

Probab=99.84  E-value=1.5e-20  Score=132.64  Aligned_cols=114  Identities=19%  Similarity=0.335  Sum_probs=87.2

Q ss_pred             ECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHh-hcCCCCeEEEEEeCCCCCCccC
Q 043745           14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRD-HADSNIVIMMIGNKTDLKHLRA   92 (174)
Q Consensus        14 ~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~piilv~nK~Dl~~~~~   92 (174)
                      +++..+.+++|||+|++.|..++..+++++|++++|||++++.++.....|+..+.+ ....+.|+++|+||+|+.+.. 
T Consensus        38 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~-  116 (158)
T cd04151          38 VTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL-  116 (158)
T ss_pred             EEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC-
Confidence            344567899999999999999999999999999999999999888877666654433 222468999999999997532 


Q ss_pred             CCHHHHHH-HH----HHhCCcEEEEeccCCCCHHHHHHHHHH
Q 043745           93 VATEDAQS-YA----EREGLSFIETSALEAINVEKAFQTILS  129 (174)
Q Consensus        93 ~~~~~~~~-~~----~~~~~~~~~~Sa~~~~~i~~v~~~l~~  129 (174)
                       ...+... +.    ...+.+++++||+++.|++++|+++++
T Consensus       117 -~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151         117 -SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             -CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence             2222222 11    112346999999999999999999875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=1.9e-20  Score=131.73  Aligned_cols=128  Identities=19%  Similarity=0.357  Sum_probs=103.4

Q ss_pred             CCCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEE
Q 043745            3 QPRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMI   81 (174)
Q Consensus         3 ~pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv   81 (174)
                      .||+|+..+ .+..+.+++.+||.+||++++..|+.||++.+++|||+|.+|++.+...++.+..+..... ...|++++
T Consensus        46 vPTiGfnVE-~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~  124 (181)
T KOG0070|consen   46 VPTIGFNVE-TVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVF  124 (181)
T ss_pred             CCcccccee-EEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEE
Confidence            599996654 3334469999999999999999999999999999999999999999999877777665554 68999999


Q ss_pred             EeCCCCCCccCCCHHHHHHHHHH-----hCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           82 GNKTDLKHLRAVATEDAQSYAER-----EGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        82 ~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      +||+|++..  .+..++......     +.+.+..++|.+|+|+.+.++|+...+..
T Consensus       125 aNKqD~~~a--ls~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~  179 (181)
T KOG0070|consen  125 ANKQDLPGA--LSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKK  179 (181)
T ss_pred             echhhcccc--CCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHHHhc
Confidence            999999864  334444333322     34567889999999999999999988754

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.84  E-value=1.8e-20  Score=132.02  Aligned_cols=110  Identities=18%  Similarity=0.338  Sum_probs=90.0

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCCCccCCCHH
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMIGNKTDLKHLRAVATE   96 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~   96 (174)
                      .+.+.+||++|++.+...+..+++++|++++|||+++++++..+..|+..+.... ..+.|+++++||+|+....  ..+
T Consensus        42 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~  119 (158)
T cd00878          42 NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVS  119 (158)
T ss_pred             CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHH
Confidence            4789999999999999999999999999999999999999999988888775533 2478999999999997533  233


Q ss_pred             HHHHHHH-----HhCCcEEEEeccCCCCHHHHHHHHHH
Q 043745           97 DAQSYAE-----REGLSFIETSALEAINVEKAFQTILS  129 (174)
Q Consensus        97 ~~~~~~~-----~~~~~~~~~Sa~~~~~i~~v~~~l~~  129 (174)
                      +......     ...++++++||++|.|++++|++|+.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~  157 (158)
T cd00878         120 ELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             HHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence            3333322     23467999999999999999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.84  E-value=4.2e-19  Score=131.47  Aligned_cols=120  Identities=30%  Similarity=0.576  Sum_probs=103.2

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      .+..++..+.+.+||++|++.|..++..++.+++++++|||+++..+|..+..|+..+.... .++|+++++||.|+.+ 
T Consensus        50 ~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~-  127 (215)
T PTZ00132         50 KFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKD-  127 (215)
T ss_pred             EEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCcc-
Confidence            33457788999999999999999999999999999999999999999999999999887654 4799999999999965 


Q ss_pred             cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      +.+..+ ...++...++.++++||+++.|++++|.++++.+..
T Consensus       128 ~~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~  169 (215)
T PTZ00132        128 RQVKAR-QITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTN  169 (215)
T ss_pred             ccCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            333333 345777788999999999999999999999998765

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.83  E-value=1.8e-19  Score=127.92  Aligned_cols=110  Identities=22%  Similarity=0.406  Sum_probs=90.7

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCCCccCCCHH
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLKHLRAVATE   96 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~   96 (174)
                      ...+.+|||+|++.+..++..++.++|+++||||+++.+++..+..|+..+.+... .++|+++++||+|+...  ...+
T Consensus        49 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~  126 (167)
T cd04160          49 NARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVE  126 (167)
T ss_pred             CEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHH
Confidence            47889999999999999999999999999999999999999988888887655322 47999999999999653  3344


Q ss_pred             HHHHHHHH-------hCCcEEEEeccCCCCHHHHHHHHHH
Q 043745           97 DAQSYAER-------EGLSFIETSALEAINVEKAFQTILS  129 (174)
Q Consensus        97 ~~~~~~~~-------~~~~~~~~Sa~~~~~i~~v~~~l~~  129 (174)
                      +...+...       .+++++++||++|.|+++++++|.+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         127 EIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             HHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence            55444432       2357999999999999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.83  E-value=1.3e-21  Score=136.83  Aligned_cols=125  Identities=28%  Similarity=0.488  Sum_probs=114.8

Q ss_pred             EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC
Q 043745           13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA   92 (174)
Q Consensus        13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~   92 (174)
                      .+++..+++.+||++|+++|......||++|.+.++||+-+|+.||+.+.+|++.+..... .+|.++|-||+||.++.+
T Consensus        63 ~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlveds~  141 (246)
T KOG4252|consen   63 KVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVEDSQ  141 (246)
T ss_pred             HhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhHhhh
Confidence            4455556778999999999999999999999999999999999999999999999987765 799999999999998888


Q ss_pred             CCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q 043745           93 VATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK  138 (174)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~  138 (174)
                      +...+.+.+++.+...++.+|++...|+..+|..|+++..+.+...
T Consensus       142 ~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLaeK~~q~~kq~  187 (246)
T KOG4252|consen  142 MDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLAEKLTQQKKQS  187 (246)
T ss_pred             cchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998887654

>cd00879 Sar1 Sar1 subfamily

Probab=99.83  E-value=2.2e-19  Score=130.29  Aligned_cols=123  Identities=22%  Similarity=0.370  Sum_probs=97.5

Q ss_pred             CCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEE
Q 043745            4 PRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMI   81 (174)
Q Consensus         4 pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv   81 (174)
                      ||++ ....+.+++  +.+.+||++|++.+...|..+++++|++++|+|+++.+++.....|+..+..... .+.|++++
T Consensus        49 ~T~~~~~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv  126 (190)
T cd00879          49 PTLHPTSEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLIL  126 (190)
T ss_pred             CccCcceEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEE
Confidence            4444 223444554  6789999999999999999999999999999999999999888888887765332 46999999


Q ss_pred             EeCCCCCCccCCCHHHHHHHHHH----------------hCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745           82 GNKTDLKHLRAVATEDAQSYAER----------------EGLSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        82 ~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      +||+|+..  .+..++.+.+...                ..++++++||++++|++++|+++.+.
T Consensus       127 ~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         127 GNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence            99999964  4556666665542                12468999999999999999999865

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PLN00023 GTP-binding protein; Provisional

Probab=99.82  E-value=1.4e-18  Score=134.04  Aligned_cols=143  Identities=23%  Similarity=0.408  Sum_probs=104.5

Q ss_pred             CCCcc---ceeEEEEC-------------CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHH
Q 043745            3 QPRLG---KLCDFQVE-------------GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLK   66 (174)
Q Consensus         3 ~pt~g---~~~~~~~~-------------~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~   66 (174)
                      .||+|   ..+.+.++             ++.+.++||||+|++.|..++..||+++|++|+|||+++.++|+.+..|+.
T Consensus        51 ~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~  130 (334)
T PLN00023         51 PQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAS  130 (334)
T ss_pred             CCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHH
Confidence            47887   33555664             256889999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcC------------CCCeEEEEEeCCCCCCcc---C---CCHHHHHHHHHHhCC-cE---E------------EE
Q 043745           67 ELRDHAD------------SNIVIMMIGNKTDLKHLR---A---VATEDAQSYAEREGL-SF---I------------ET  112 (174)
Q Consensus        67 ~i~~~~~------------~~~piilv~nK~Dl~~~~---~---~~~~~~~~~~~~~~~-~~---~------------~~  112 (174)
                      .+.....            .++|++||+||+||...+   .   +..++++.|+.+.++ +.   +            .+
T Consensus       131 eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~l~~~~~~~~~~~~~~~~~~~~  210 (334)
T PLN00023        131 EVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGNGGLIA  210 (334)
T ss_pred             HHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHHHHHHHHHHcCCCccccccccccccCCCccHhh
Confidence            9976531            258999999999996542   2   357899999999873 11   1            12


Q ss_pred             eccCCC-CHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 043745          113 SALEAI-NVEKAFQTILSEIYRIISKKSLSSGEP  145 (174)
Q Consensus       113 Sa~~~~-~i~~v~~~l~~~i~~~~~~~~~~~~~~  145 (174)
                      .|+.+. ..+.+..-....|.++.-....+.+.+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (334)
T PLN00023        211 AAKEARYDKEALIKFFRMLIRRRYFSDELPAPSP  244 (334)
T ss_pred             hhhhhcccHHHHHHHHHHHHHHHhhcccCCCCCC
Confidence            333332 334444444445555555666666555

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.82  E-value=1e-18  Score=120.58  Aligned_cols=128  Identities=19%  Similarity=0.353  Sum_probs=102.3

Q ss_pred             CCCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEE
Q 043745            3 QPRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMM   80 (174)
Q Consensus         3 ~pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piil   80 (174)
                      .||.| ..+++.  .+.+++++||++||...++.|+.||+..|++|+|+|.+|+..+++....+..+..-.. ...|+++
T Consensus        45 ~pt~gf~Iktl~--~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lv  122 (185)
T KOG0073|consen   45 SPTLGFQIKTLE--YKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLV  122 (185)
T ss_pred             CCccceeeEEEE--ecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEE
Confidence            37777 344444  4458899999999999999999999999999999999999999888766666543222 4689999


Q ss_pred             EEeCCCCCCccCCCHHH------HHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATED------AQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~------~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      ++||+|+...  +..++      +.+++....++++.|||.+|+++.+.+.|+...+..+
T Consensus       123 lank~dl~~~--l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~r  180 (185)
T KOG0073|consen  123 LANKQDLPGA--LSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMSR  180 (185)
T ss_pred             EEecCcCccc--cCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHHH
Confidence            9999999842  22222      3455566678999999999999999999999998874

>cd01890 LepA LepA subfamily

Probab=99.82  E-value=6.2e-19  Score=126.55  Aligned_cols=111  Identities=25%  Similarity=0.332  Sum_probs=89.7

Q ss_pred             CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCC
Q 043745           15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVA   94 (174)
Q Consensus        15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~   94 (174)
                      ++..+.++||||+|+++|...+..+++++|++|+|||+++..++..+..|.... .   .++|+++|+||+|+.+..  .
T Consensus        63 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~---~~~~iiiv~NK~Dl~~~~--~  136 (179)
T cd01890          63 DGQEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E---NNLEIIPVINKIDLPSAD--P  136 (179)
T ss_pred             CCCcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H---cCCCEEEEEECCCCCcCC--H
Confidence            667888999999999999999999999999999999999877776666664332 2   368999999999996422  2


Q ss_pred             HHHHHHHHHHhCC---cEEEEeccCCCCHHHHHHHHHHHH
Q 043745           95 TEDAQSYAEREGL---SFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        95 ~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      .....++++.+++   +++++||++|.|++++|+++.+.+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         137 ERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             HHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence            2334566676776   489999999999999999998764

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.81  E-value=1.2e-18  Score=126.15  Aligned_cols=111  Identities=18%  Similarity=0.278  Sum_probs=90.3

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCCCccCCCHH
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMIGNKTDLKHLRAVATE   96 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~   96 (174)
                      .+.+.+||++|++.+...|..++.++|+++||+|+++++++.....|+..+.... ..+.|+++|+||+|+..  .++.+
T Consensus        60 ~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~  137 (184)
T smart00178       60 NIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASED  137 (184)
T ss_pred             CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHH
Confidence            4678999999999999999999999999999999999999998888877765432 24789999999999964  34555


Q ss_pred             HHHHHHHH------------hCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745           97 DAQSYAER------------EGLSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        97 ~~~~~~~~------------~~~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      ++.+....            ....++++||++++|++++++||..+
T Consensus       138 ~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      138 ELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             HHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence            55443311            12358999999999999999999765

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=1.8e-18  Score=116.50  Aligned_cols=126  Identities=21%  Similarity=0.397  Sum_probs=99.7

Q ss_pred             CCCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEE
Q 043745            3 QPRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMI   81 (174)
Q Consensus         3 ~pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv   81 (174)
                      .||+|++.+ ++-.+.+.+++||++|++..+.+|+.||.+..++|||+|..+.+..++.+..+..+.... ..+.|+++.
T Consensus        46 ipTvGFnve-tVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~Lvl  124 (180)
T KOG0071|consen   46 IPTVGFNVE-TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILIL  124 (180)
T ss_pred             ccccceeEE-EEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEE
Confidence            489996643 344566889999999999999999999999999999999999988888866555554333 368999999


Q ss_pred             EeCCCCCCccCCCHHHHHHHHH-----HhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           82 GNKTDLKHLRAVATEDAQSYAE-----REGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        82 ~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      +||+|++..  ...++++.+..     ...+-+.+++|.++.|+.+.|.|+....
T Consensus       125 ANkQDlp~A--~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~  177 (180)
T KOG0071|consen  125 ANKQDLPDA--MKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNL  177 (180)
T ss_pred             ecCcccccc--cCHHHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhhc
Confidence            999999874  44556555543     2235678999999999999999987653

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.79  E-value=2.7e-18  Score=134.60  Aligned_cols=115  Identities=14%  Similarity=0.046  Sum_probs=90.3

Q ss_pred             EEEEEEeCCCchh-------hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCeEEEEEeCCCCCC
Q 043745           19 IKAQIWDTAGQER-------YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD--SNIVIMMIGNKTDLKH   89 (174)
Q Consensus        19 ~~l~l~D~~G~~~-------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~   89 (174)
                      ..+.|||+||..+       ....+-.++++++++++|+|+++.++++.+..|..++..+..  .+.|+++|+||+|+.+
T Consensus       206 ~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~  285 (335)
T PRK12299        206 KSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD  285 (335)
T ss_pred             cEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence            4589999999742       122233355689999999999988889999999998877653  3689999999999976


Q ss_pred             ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      ...+.....+.++...+.+++++||++++|++++++++.+.+..
T Consensus       286 ~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~  329 (335)
T PRK12299        286 EEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEE  329 (335)
T ss_pred             chhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            44444444555666667899999999999999999999887654

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.79  E-value=9.7e-19  Score=118.69  Aligned_cols=123  Identities=25%  Similarity=0.461  Sum_probs=99.4

Q ss_pred             CCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEE
Q 043745            4 PRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIG   82 (174)
Q Consensus         4 pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~   82 (174)
                      ||+|+.. ..+....+.+.+||.+||.+|+.+|+.|+++++++++|+|+.+++.+......+..+..... ..+|+++++
T Consensus        51 ptvGfnm-rk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLG  129 (186)
T KOG0075|consen   51 PTVGFNM-RKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLG  129 (186)
T ss_pred             cccccee-EEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEec
Confidence            7888654 35666678999999999999999999999999999999999999988877766666655443 679999999


Q ss_pred             eCCCCCCccCCCHHHHHHHHHHhC--------CcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           83 NKTDLKHLRAVATEDAQSYAEREG--------LSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        83 nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      ||.|++++  +...   .+..++|        +..|.+|++...|++.+.+|++++-.
T Consensus       130 nK~d~~~A--L~~~---~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk  182 (186)
T KOG0075|consen  130 NKIDLPGA--LSKI---ALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSK  182 (186)
T ss_pred             ccccCccc--ccHH---HHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence            99999863  3232   2333443        45789999999999999999998743

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.78  E-value=3.6e-18  Score=121.29  Aligned_cols=112  Identities=18%  Similarity=0.247  Sum_probs=81.1

Q ss_pred             eEEEEEEEeCCCchhhh---------hhhHHhhccCCEEEEEEeCCChhhH--HHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 043745           17 RTIKAQIWDTAGQERYR---------AITSAYYRGALGALLVYDVTKPTTF--ENVSRWLKELRDHADSNIVIMMIGNKT   85 (174)
Q Consensus        17 ~~~~l~l~D~~G~~~~~---------~~~~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~   85 (174)
                      ..+.+.||||||+.+..         .........+|++++|+|+++..++  .....|+..+.... .+.|+++++||+
T Consensus        45 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~  123 (168)
T cd01897          45 KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKI  123 (168)
T ss_pred             CceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEcc
Confidence            34789999999984211         1111112346899999999987653  55567877776543 378999999999


Q ss_pred             CCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           86 DLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        86 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      |+.....+.  +.++++...+.+++++||+++.|++++|+++.+.+
T Consensus       124 Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  167 (168)
T cd01897         124 DLLTFEDLS--EIEEEEELEGEEVLKISTLTEEGVDEVKNKACELL  167 (168)
T ss_pred             ccCchhhHH--HHHHhhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence            997644332  24555555678899999999999999999998875

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.77  E-value=1.1e-17  Score=116.90  Aligned_cols=110  Identities=23%  Similarity=0.409  Sum_probs=86.9

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCCCccCCCHH
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMIGNKTDLKHLRAVATE   96 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~   96 (174)
                      .+.+.+||++|++.+...+..+++.+|++++|+|+++.+++.....|+..+.... ..++|+++|+||+|+.+...  ..
T Consensus        43 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~  120 (159)
T cd04159          43 NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VD  120 (159)
T ss_pred             CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HH
Confidence            3789999999999999999999999999999999999999988877777765432 24789999999999875322  22


Q ss_pred             HHHHHH-----HHhCCcEEEEeccCCCCHHHHHHHHHH
Q 043745           97 DAQSYA-----EREGLSFIETSALEAINVEKAFQTILS  129 (174)
Q Consensus        97 ~~~~~~-----~~~~~~~~~~Sa~~~~~i~~v~~~l~~  129 (174)
                      +.....     ....++++++|++++.|++++++++.+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159         121 ELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             HHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence            221111     122357899999999999999999875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01898 Obg Obg subfamily

Probab=99.77  E-value=6e-18  Score=120.32  Aligned_cols=111  Identities=15%  Similarity=0.101  Sum_probs=84.9

Q ss_pred             EEEEEEeCCCch----hhhhhhHHh---hccCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcC--CCCeEEEEEeCCCCC
Q 043745           19 IKAQIWDTAGQE----RYRAITSAY---YRGALGALLVYDVTKP-TTFENVSRWLKELRDHAD--SNIVIMMIGNKTDLK   88 (174)
Q Consensus        19 ~~l~l~D~~G~~----~~~~~~~~~---~~~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~   88 (174)
                      ..+.||||||+.    .+..+...+   +..+|++++|+|+++. ++++.+..|+..+.....  ...|+++|+||+|+.
T Consensus        48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  127 (170)
T cd01898          48 RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLL  127 (170)
T ss_pred             CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcC
Confidence            378999999963    222233333   3469999999999999 789999999888876542  368999999999997


Q ss_pred             CccCCCHHHHHHHHHHh-CCcEEEEeccCCCCHHHHHHHHHHH
Q 043745           89 HLRAVATEDAQSYAERE-GLSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        89 ~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      +.... .+....+.... +.+++++||+++.|++++|+++.+.
T Consensus       128 ~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  169 (170)
T cd01898         128 DEEEL-FELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL  169 (170)
T ss_pred             Cchhh-HHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence            64433 34455555553 6789999999999999999998865

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.75  E-value=5.7e-18  Score=117.30  Aligned_cols=98  Identities=21%  Similarity=0.195  Sum_probs=76.4

Q ss_pred             EEEeCCCch-----hhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHH
Q 043745           22 QIWDTAGQE-----RYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATE   96 (174)
Q Consensus        22 ~l~D~~G~~-----~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~   96 (174)
                      .+|||+|+.     .|..+.. .++++|++++|||+++++++.. ..|...+      ..|+++|+||+|+.+ +....+
T Consensus        38 ~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~  108 (142)
T TIGR02528        38 GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIE  108 (142)
T ss_pred             eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHH
Confidence            689999982     3444444 5899999999999999988755 3454321      249999999999965 345567


Q ss_pred             HHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHH
Q 043745           97 DAQSYAEREGL-SFIETSALEAINVEKAFQTIL  128 (174)
Q Consensus        97 ~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~  128 (174)
                      +.+++++..+. +++++||+++.|++++|+++.
T Consensus       109 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  141 (142)
T TIGR02528       109 RAKELLETAGAEPIFEISSVDEQGLEALVDYLN  141 (142)
T ss_pred             HHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence            77888888776 799999999999999999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd04155 Arl3 Arl3 subfamily

Probab=99.75  E-value=6.4e-17  Score=115.43  Aligned_cols=119  Identities=22%  Similarity=0.346  Sum_probs=90.0

Q ss_pred             CCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEE
Q 043745            4 PRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMI   81 (174)
Q Consensus         4 pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv   81 (174)
                      ||.| ....+.+++  ..+.+||++|+..+...+..+++++|++++|+|+++..++.....|+..+.... ...+|++++
T Consensus        44 ~t~g~~~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv  121 (173)
T cd04155          44 PTQGFNIKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVF  121 (173)
T ss_pred             CCCCcceEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEE
Confidence            5555 222334444  678999999999999999999999999999999999988888877776654332 246999999


Q ss_pred             EeCCCCCCccCCCHHHHHHHHHHhCC--------cEEEEeccCCCCHHHHHHHHHH
Q 043745           82 GNKTDLKHLRAVATEDAQSYAEREGL--------SFIETSALEAINVEKAFQTILS  129 (174)
Q Consensus        82 ~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~~~~~i~~v~~~l~~  129 (174)
                      +||.|+.+..  ..   .++.+.+++        +++++||++++|++++|+|+.+
T Consensus       122 ~nK~D~~~~~--~~---~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         122 ANKQDLATAA--PA---EEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             EECCCCccCC--CH---HHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence            9999986532  12   223333332        4789999999999999999875

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04171 SelB SelB subfamily

Probab=99.74  E-value=4.1e-17  Score=115.06  Aligned_cols=106  Identities=18%  Similarity=0.122  Sum_probs=76.3

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC--
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTK---PTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA--   92 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~--   92 (174)
                      ...+.+|||||+++|......++.++|++++|+|+++   .++.+.+    ..+... . ..|+++++||+|+.+...  
T Consensus        50 ~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~----~~~~~~-~-~~~~ilv~NK~Dl~~~~~~~  123 (164)
T cd04171          50 GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHL----EILELL-G-IKRGLVVLTKADLVDEDWLE  123 (164)
T ss_pred             CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHH----HHHHHh-C-CCcEEEEEECccccCHHHHH
Confidence            3578999999999998777788899999999999987   3333322    222222 1 248999999999975321  


Q ss_pred             CCHHHHHHHHHH---hCCcEEEEeccCCCCHHHHHHHHHH
Q 043745           93 VATEDAQSYAER---EGLSFIETSALEAINVEKAFQTILS  129 (174)
Q Consensus        93 ~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~v~~~l~~  129 (174)
                      ...++..++...   .+.+++++||+++.|++++++.+.+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         124 LVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             HHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence            112334444443   3578999999999999999988754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=1.4e-17  Score=115.97  Aligned_cols=127  Identities=22%  Similarity=0.388  Sum_probs=99.8

Q ss_pred             CCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEE
Q 043745            4 PRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMI   81 (174)
Q Consensus         4 pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv   81 (174)
                      ||+| -.-++.++  ...+.|||.+||+..+++|..||..++++|+++|+++++.|+....-++.+..... .++|+++.
T Consensus        55 ~tvgLnig~i~v~--~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~l  132 (197)
T KOG0076|consen   55 PTVGLNIGTIEVC--NAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVL  132 (197)
T ss_pred             cccceeecceeec--cceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhh
Confidence            6666 22244455  45689999999999999999999999999999999999999988766666544433 68999999


Q ss_pred             EeCCCCCCccCCCHHHHHHHHH------HhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           82 GNKTDLKHLRAVATEDAQSYAE------REGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        82 ~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      +||.|+.+..  ..+++.....      +...++..+||.+|+|+++...|++..+.+.
T Consensus       133 ankqd~q~~~--~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  133 ANKQDLQNAM--EAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             cchhhhhhhh--hHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence            9999998643  3334333322      2236899999999999999999999987765

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.74  E-value=9e-17  Score=109.91  Aligned_cols=120  Identities=27%  Similarity=0.424  Sum_probs=103.1

Q ss_pred             CCeEEEEEEEeCCCchhh-hhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCCCccC
Q 043745           15 EGRTIKAQIWDTAGQERY-RAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLKHLRA   92 (174)
Q Consensus        15 ~~~~~~l~l~D~~G~~~~-~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~   92 (174)
                      .|-+-++.|+||.|...+ ..+-+.|+.-+|++++|||..|++||+.+..+...|..+.. .++||++++||.|+.++++
T Consensus        56 rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~  135 (198)
T KOG3883|consen   56 RGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPRE  135 (198)
T ss_pred             CChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchh
Confidence            445567999999998888 56778899999999999999999999998665555655443 6899999999999998899


Q ss_pred             CCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           93 VATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      +..+.++.|+..-.+..++++|.+...+-+-|..+...+.+.
T Consensus       136 vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf~~l~~rl~~p  177 (198)
T KOG3883|consen  136 VDMDVAQIWAKREKVKLWEVTAMDRPSLYEPFTYLASRLHQP  177 (198)
T ss_pred             cCHHHHHHHHhhhheeEEEEEeccchhhhhHHHHHHHhccCC
Confidence            999999999999999999999999999999888887765543

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.73  E-value=9.4e-17  Score=112.65  Aligned_cols=111  Identities=17%  Similarity=0.162  Sum_probs=83.6

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhh------hhHHhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEE
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRA------ITSAYYR--GALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIG   82 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~------~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~   82 (174)
                      .+.+++  ..+.||||||++.+..      ++..++.  ++|++++|+|+.+.+...   .|+..+...   ++|+++++
T Consensus        37 ~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~---~~~~~~~~~---~~~~iiv~  108 (158)
T cd01879          37 RFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNL---YLTLQLLEL---GLPVVVAL  108 (158)
T ss_pred             EEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHH---HHHHHHHHc---CCCEEEEE
Confidence            344454  4689999999987654      3566665  999999999998865432   344444332   68999999


Q ss_pred             eCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745           83 NKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        83 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      ||+|+.+...+. .....++..++++++++||.++.|+.++++++.+.
T Consensus       109 NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~  155 (158)
T cd01879         109 NMIDEAEKRGIK-IDLDKLSELLGVPVVPTSARKGEGIDELKDAIAEL  155 (158)
T ss_pred             ehhhhcccccch-hhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHH
Confidence            999997644443 33467777789999999999999999999988775

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.73  E-value=9.7e-17  Score=125.64  Aligned_cols=112  Identities=15%  Similarity=0.121  Sum_probs=85.8

Q ss_pred             EEEEEEeCCCchh----hhhhhHHh---hccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhcC--CCCeEEEEEeCCC
Q 043745           19 IKAQIWDTAGQER----YRAITSAY---YRGALGALLVYDVTKP---TTFENVSRWLKELRDHAD--SNIVIMMIGNKTD   86 (174)
Q Consensus        19 ~~l~l~D~~G~~~----~~~~~~~~---~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~piilv~nK~D   86 (174)
                      ..+.|||+||...    ...+...+   +++++++++|+|+++.   ++++.+..|+.++..+..  .+.|+++|+||+|
T Consensus       205 ~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~D  284 (329)
T TIGR02729       205 RSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKID  284 (329)
T ss_pred             eEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCcc
Confidence            5689999999742    12233333   4579999999999986   678888888888766543  4689999999999


Q ss_pred             CCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           87 LKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        87 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      +.+... ..+..+++++.++.+++++||++++|++++++++.+.+
T Consensus       285 L~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       285 LLDEEE-LAELLKELKKALGKPVFPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             CCChHH-HHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence            976432 23445566667788999999999999999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01878 HflX HflX subfamily

Probab=99.72  E-value=8.3e-17  Score=118.12  Aligned_cols=105  Identities=21%  Similarity=0.187  Sum_probs=80.9

Q ss_pred             EEEEEeCCCchh---------hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           20 KAQIWDTAGQER---------YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        20 ~l~l~D~~G~~~---------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      .+.||||+|..+         |...+ ..+..+|++++|+|+++++++..+..|...+......+.|+++|+||+|+.+.
T Consensus        90 ~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~  168 (204)
T cd01878          90 EVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDD  168 (204)
T ss_pred             eEEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCCh
Confidence            689999999732         22222 23678999999999999988888877877776655456899999999999653


Q ss_pred             cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745           91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      ...     ..++...+.+++++||+++.|+++++++|.+.
T Consensus       169 ~~~-----~~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~  203 (204)
T cd01878         169 EEL-----EERLEAGRPDAVFISAKTGEGLDELLEAIEEL  203 (204)
T ss_pred             HHH-----HHHhhcCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence            221     13444556789999999999999999998765

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.72  E-value=1.4e-16  Score=109.30  Aligned_cols=123  Identities=24%  Similarity=0.508  Sum_probs=103.7

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      ++.+.+..+.+.+||.+|++++..+.+...+++-+++|+||.+.+.+++.+.+|+.+.+......+|+ +|++|.|+-=.
T Consensus        61 t~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPi-lvGTKyD~fi~  139 (205)
T KOG1673|consen   61 TVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPI-LVGTKYDLFID  139 (205)
T ss_pred             EEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceE-EeccchHhhhc
Confidence            56778889999999999999999999999999999999999999999999999999988776655665 68999996321


Q ss_pred             -----cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           91 -----RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        91 -----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                           ++....+.+.+|+-++...+++|+....|+..+|.-++.++...
T Consensus       140 lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~vlAklFnL  188 (205)
T KOG1673|consen  140 LPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIFKIVLAKLFNL  188 (205)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHHHHHHHHHhCC
Confidence                 11122446777888899999999999999999999888887664

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.71  E-value=1.2e-16  Score=113.06  Aligned_cols=104  Identities=14%  Similarity=0.153  Sum_probs=78.7

Q ss_pred             EEeCCCc-----hhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHH
Q 043745           23 IWDTAGQ-----ERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATED   97 (174)
Q Consensus        23 l~D~~G~-----~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~   97 (174)
                      +|||||.     +.++.+. ..++++|++++|+|+++.+++.  ..|+..+   . .+.|+++++||+|+.+   ...+.
T Consensus        41 ~iDtpG~~~~~~~~~~~~~-~~~~~ad~il~v~d~~~~~s~~--~~~~~~~---~-~~~~ii~v~nK~Dl~~---~~~~~  110 (158)
T PRK15467         41 DIDTPGEYFSHPRWYHALI-TTLQDVDMLIYVHGANDPESRL--PAGLLDI---G-VSKRQIAVISKTDMPD---ADVAA  110 (158)
T ss_pred             cccCCccccCCHHHHHHHH-HHHhcCCEEEEEEeCCCccccc--CHHHHhc---c-CCCCeEEEEEccccCc---ccHHH
Confidence            6999997     3333333 3478999999999999887653  3454443   1 2578999999999965   33566


Q ss_pred             HHHHHHHhCC--cEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q 043745           98 AQSYAEREGL--SFIETSALEAINVEKAFQTILSEIYRIIS  136 (174)
Q Consensus        98 ~~~~~~~~~~--~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~  136 (174)
                      ..+++.+++.  +++++||++++|++++|+.+.+.+.+...
T Consensus       111 ~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~~~~  151 (158)
T PRK15467        111 TRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQEEA  151 (158)
T ss_pred             HHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhchhhhc
Confidence            7777778774  89999999999999999999888765543

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.71  E-value=8.3e-16  Score=105.75  Aligned_cols=116  Identities=47%  Similarity=0.804  Sum_probs=90.8

Q ss_pred             EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHH-HHhhcCCCCeEEEEEeCCCCCCcc
Q 043745           13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDHADSNIVIMMIGNKTDLKHLR   91 (174)
Q Consensus        13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~-i~~~~~~~~piilv~nK~Dl~~~~   91 (174)
                      ...+....+.+||++|+..+...+..+++.+|++++|+|+++..++.....|+.. .........|+++++||.|+....
T Consensus        39 ~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~  118 (157)
T cd00882          39 EVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEER  118 (157)
T ss_pred             EECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccccc
Confidence            3445678899999999999988889999999999999999999998888777322 222233579999999999997643


Q ss_pred             CCCHHH-HHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043745           92 AVATED-AQSYAEREGLSFIETSALEAINVEKAFQTIL  128 (174)
Q Consensus        92 ~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~  128 (174)
                      ...... ...+....+.+++++|+.++.|++++++++.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882         119 VVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             chHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            332222 3444555568999999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.69  E-value=2.1e-16  Score=112.77  Aligned_cols=113  Identities=21%  Similarity=0.185  Sum_probs=82.4

Q ss_pred             EEEEEEEeCCCchhh----hhh---hHHhhccCCEEEEEEeCCCh------hhHHHHHHHHHHHHhhcC-------CCCe
Q 043745           18 TIKAQIWDTAGQERY----RAI---TSAYYRGALGALLVYDVTKP------TTFENVSRWLKELRDHAD-------SNIV   77 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~----~~~---~~~~~~~~d~ii~v~d~~~~------~s~~~~~~~~~~i~~~~~-------~~~p   77 (174)
                      ...+.||||||....    ..+   ...+++++|++++|+|+++.      .++..+..|...+.....       .+.|
T Consensus        43 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  122 (176)
T cd01881          43 GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKP  122 (176)
T ss_pred             CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCC
Confidence            456799999997431    222   23457789999999999988      578887777777754432       2689


Q ss_pred             EEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745           78 IMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        78 iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      +++|+||+|+..................+..++++||+++.|++++++++.+.
T Consensus       123 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         123 VIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             eEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence            99999999997644333322233444456789999999999999999988764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.69  E-value=3.6e-15  Score=110.36  Aligned_cols=126  Identities=39%  Similarity=0.578  Sum_probs=98.6

Q ss_pred             EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhh-HHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCcc
Q 043745           13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTT-FENVSRWLKELRDHADSNIVIMMIGNKTDLKHLR   91 (174)
Q Consensus        13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~   91 (174)
                      ..++..+.+.+|||+|+++|+.++..|+.++++++++||.++.++ ++....|...+........|+++++||+|+....
T Consensus        48 ~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~  127 (219)
T COG1100          48 EPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQ  127 (219)
T ss_pred             EeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccch
Confidence            344447889999999999999999999999999999999999554 4455889999887765569999999999997653


Q ss_pred             ------------CCCHHHHHHHHHHh---CCcEEEEecc--CCCCHHHHHHHHHHHHHHHHhhc
Q 043745           92 ------------AVATEDAQSYAERE---GLSFIETSAL--EAINVEKAFQTILSEIYRIISKK  138 (174)
Q Consensus        92 ------------~~~~~~~~~~~~~~---~~~~~~~Sa~--~~~~i~~v~~~l~~~i~~~~~~~  138 (174)
                                  ..............   ...++++|++  ++.++.++|..++..+.......
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~~~~~  191 (219)
T COG1100         128 SSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLEEIEKL  191 (219)
T ss_pred             hHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHHhhhhh
Confidence                        22233333333222   3348999999  99999999999999998665444

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.68  E-value=3.8e-16  Score=113.89  Aligned_cols=107  Identities=17%  Similarity=0.144  Sum_probs=77.5

Q ss_pred             EEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCcc
Q 043745           12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLR   91 (174)
Q Consensus        12 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~   91 (174)
                      +.++++.+.+.||||+|+++|...+..+++++|++++|||+++.. +.....|+..+..   .++|+++++||+|+...+
T Consensus        58 ~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~  133 (194)
T cd01891          58 TAVTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDAR  133 (194)
T ss_pred             eEEEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCC
Confidence            345556688999999999999999999999999999999998742 2333344444433   368999999999996532


Q ss_pred             C-CCHHHHHHHHH-------HhCCcEEEEeccCCCCHHH
Q 043745           92 A-VATEDAQSYAE-------REGLSFIETSALEAINVEK  122 (174)
Q Consensus        92 ~-~~~~~~~~~~~-------~~~~~~~~~Sa~~~~~i~~  122 (174)
                      . ...++..++..       ..+++++++||++|.|+.+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~  172 (194)
T cd01891         134 PEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLN  172 (194)
T ss_pred             HHHHHHHHHHHHHHhCCccccCccCEEEeehhccccccc
Confidence            1 12334444442       2367899999999987643

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.68  E-value=7.4e-16  Score=109.21  Aligned_cols=111  Identities=15%  Similarity=0.136  Sum_probs=78.0

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC-CHH
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV-ATE   96 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~-~~~   96 (174)
                      ...+.||||+|++.|..++..++..+|++++|+|+++....... ..+..+..   .++|+++|+||+|+...... ...
T Consensus        49 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~-~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~  124 (168)
T cd01887          49 IPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTI-EAIKLAKA---ANVPFIVALNKIDKPNANPERVKN  124 (168)
T ss_pred             cceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHH-HHHHHHHH---cCCCEEEEEEceecccccHHHHHH
Confidence            56789999999999999999999999999999999874322211 11222322   26899999999999642210 011


Q ss_pred             HHHHHHH----H--hCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           97 DAQSYAE----R--EGLSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        97 ~~~~~~~----~--~~~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      ....+..    .  ..++++++||+++.|++++++++.+...
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  166 (168)
T cd01887         125 ELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAE  166 (168)
T ss_pred             HHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence            1111111    1  1368999999999999999999987643

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PRK04213 GTP-binding protein; Provisional

Probab=99.68  E-value=8.6e-17  Score=117.73  Aligned_cols=106  Identities=25%  Similarity=0.211  Sum_probs=74.0

Q ss_pred             EEEEEeCCC-----------chhhhhhhHHhhc----cCCEEEEEEeCCChhhHH----------HHHHHHHHHHhhcCC
Q 043745           20 KAQIWDTAG-----------QERYRAITSAYYR----GALGALLVYDVTKPTTFE----------NVSRWLKELRDHADS   74 (174)
Q Consensus        20 ~l~l~D~~G-----------~~~~~~~~~~~~~----~~d~ii~v~d~~~~~s~~----------~~~~~~~~i~~~~~~   74 (174)
                      .+.+|||+|           ++.++..+..++.    .++++++|+|.++...+.          ....++..+..   .
T Consensus        53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~  129 (201)
T PRK04213         53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---L  129 (201)
T ss_pred             ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---c
Confidence            478999999           5777777777765    357888888876532210          00111222222   3


Q ss_pred             CCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCC---------cEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           75 NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGL---------SFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        75 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      ++|+++|+||+|+.+.+   .+...+++..+++         +++++||++| |++++|++|.+.+.
T Consensus       130 ~~p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~  192 (201)
T PRK04213        130 GIPPIVAVNKMDKIKNR---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH  192 (201)
T ss_pred             CCCeEEEEECccccCcH---HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence            68999999999996533   3456666777765         4799999999 99999999988754

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.67  E-value=1.7e-15  Score=126.82  Aligned_cols=112  Identities=23%  Similarity=0.293  Sum_probs=90.0

Q ss_pred             CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCC
Q 043745           15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVA   94 (174)
Q Consensus        15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~   94 (174)
                      ++..+.++||||||+++|...+..++..+|++|+|||+++..+.+....|...+.    .++|+++++||+|+....  .
T Consensus        66 ~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~  139 (595)
T TIGR01393        66 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--P  139 (595)
T ss_pred             CCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--H
Confidence            5677899999999999999999999999999999999998777776666654432    268999999999996421  1


Q ss_pred             HHHHHHHHHHhCC---cEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           95 TEDAQSYAEREGL---SFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        95 ~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      .....++.+.+++   +++++||++|.|++++|+++.+.+.
T Consensus       140 ~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp  180 (595)
T TIGR01393       140 ERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVP  180 (595)
T ss_pred             HHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCC
Confidence            2334566666675   4899999999999999999887653

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.67  E-value=1.9e-15  Score=121.56  Aligned_cols=112  Identities=17%  Similarity=0.188  Sum_probs=86.3

Q ss_pred             EEEEEEeCCCchh----hhhhhHHh---hccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhcC--CCCeEEEEEeCCC
Q 043745           19 IKAQIWDTAGQER----YRAITSAY---YRGALGALLVYDVTKP---TTFENVSRWLKELRDHAD--SNIVIMMIGNKTD   86 (174)
Q Consensus        19 ~~l~l~D~~G~~~----~~~~~~~~---~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~piilv~nK~D   86 (174)
                      ..+.|||+||...    ...+...|   +++++++++|+|+++.   ++++.+..|...+..+..  .+.|++||+||+|
T Consensus       206 ~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~D  285 (424)
T PRK12297        206 RSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMD  285 (424)
T ss_pred             ceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCC
Confidence            4689999999642    22344444   4569999999999864   677777888888776643  3689999999999


Q ss_pred             CCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           87 LKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        87 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      +..    ..+..+.+.+.++.+++++||++++|++++++++.+.+...
T Consensus       286 L~~----~~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~~~  329 (424)
T PRK12297        286 LPE----AEENLEEFKEKLGPKVFPISALTGQGLDELLYAVAELLEET  329 (424)
T ss_pred             CcC----CHHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            853    23456667777778899999999999999999998876553

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.67  E-value=2e-15  Score=119.24  Aligned_cols=105  Identities=21%  Similarity=0.157  Sum_probs=77.6

Q ss_pred             EEEEEEeCCCc---------hhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           19 IKAQIWDTAGQ---------ERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        19 ~~l~l~D~~G~---------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      ..+.||||+|.         +.|...+. .+.++|++++|+|++++.+++.+..|...+......+.|+++|+||+|+.+
T Consensus       237 ~~i~l~DT~G~~~~l~~~lie~f~~tle-~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~  315 (351)
T TIGR03156       237 GEVLLTDTVGFIRDLPHELVAAFRATLE-EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLD  315 (351)
T ss_pred             ceEEEEecCcccccCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCC
Confidence            47899999997         23444333 478999999999999988888777776666554434689999999999964


Q ss_pred             ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745           90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      ...     ...+. ....+++++||+++.|++++++++.+.
T Consensus       316 ~~~-----v~~~~-~~~~~~i~iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       316 EPR-----IERLE-EGYPEAVFVSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             hHh-----HHHHH-hCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence            221     11111 122468999999999999999988754

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR00436 era GTP-binding protein Era

Probab=99.66  E-value=1.2e-15  Score=116.85  Aligned_cols=107  Identities=20%  Similarity=0.083  Sum_probs=76.2

Q ss_pred             EEEEEEeCCCchhh--------hhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           19 IKAQIWDTAGQERY--------RAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        19 ~~l~l~D~~G~~~~--------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      .++.||||||....        ......+++++|++++|+|+++..+..  ..++..+..   .+.|+++|+||+|+...
T Consensus        48 ~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~  122 (270)
T TIGR00436        48 SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFK  122 (270)
T ss_pred             cEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCH
Confidence            46899999997532        112345678999999999999876664  334444433   26899999999999642


Q ss_pred             cCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHH
Q 043745           91 RAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      .. .......++...+. +++++||++|.|++++++++.+.+
T Consensus       123 ~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l  163 (270)
T TIGR00436       123 DK-LLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHL  163 (270)
T ss_pred             HH-HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence            22 22334444444454 799999999999999999887764

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01894 EngA1 EngA1 subfamily

Probab=99.66  E-value=1.5e-15  Score=106.22  Aligned_cols=103  Identities=21%  Similarity=0.097  Sum_probs=74.4

Q ss_pred             EEEEEEeCCCchhhhh--------hhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           19 IKAQIWDTAGQERYRA--------ITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~--------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      ..+.+|||||++.+..        .+..+++++|++++|+|..+..+.... .+...+..   .+.|+++|+||+|+.+.
T Consensus        45 ~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~  120 (157)
T cd01894          45 REFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKE  120 (157)
T ss_pred             eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCCh
Confidence            5689999999887543        345667899999999999875444332 12222322   25899999999999763


Q ss_pred             cCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHH
Q 043745           91 RAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      ...     ......++. +++++|++++.|++++|+++.+.
T Consensus       121 ~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (157)
T cd01894         121 EDE-----AAEFYSLGFGEPIPISAEHGRGIGDLLDAILEL  156 (157)
T ss_pred             HHH-----HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence            221     233344565 78999999999999999999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.66  E-value=1.3e-15  Score=123.45  Aligned_cols=106  Identities=21%  Similarity=0.244  Sum_probs=82.5

Q ss_pred             EEEEEEeCCCchhhhhh--------hHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           19 IKAQIWDTAGQERYRAI--------TSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~--------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      ..+.+|||+|+..+...        ...+++++|++++|||++++.+++..  |+..+..   .+.|+++|+||+|+...
T Consensus       251 ~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~  325 (442)
T TIGR00450       251 ILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN  325 (442)
T ss_pred             EEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc
Confidence            45789999998654332        24678899999999999998887765  6665543   36899999999999642


Q ss_pred             cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q 043745           91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIIS  136 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~  136 (174)
                            +...++..++.+++++||++ .|++++|+.+.+.+.+...
T Consensus       326 ------~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~~~~~  364 (442)
T TIGR00450       326 ------SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKINAFYS  364 (442)
T ss_pred             ------chhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHHHHHhc
Confidence                  22345667788899999997 6999999999999887653

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.65  E-value=1.9e-15  Score=123.96  Aligned_cols=116  Identities=19%  Similarity=0.197  Sum_probs=79.8

Q ss_pred             EECCeEEEEEEEeCCCc----------hhhhhhh-HHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEE
Q 043745           13 QVEGRTIKAQIWDTAGQ----------ERYRAIT-SAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMI   81 (174)
Q Consensus        13 ~~~~~~~~l~l~D~~G~----------~~~~~~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv   81 (174)
                      .+++.  .+.||||+|.          +.|..+. ..+++++|++++|||+++..++..+. ++..+..   .+.|+|+|
T Consensus       255 ~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV  328 (472)
T PRK03003        255 ELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLA  328 (472)
T ss_pred             EECCE--EEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEE
Confidence            34554  4579999995          3444443 34678999999999999988887763 4444433   36899999


Q ss_pred             EeCCCCCCccCC--CHHHHHH-HHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           82 GNKTDLKHLRAV--ATEDAQS-YAEREGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        82 ~nK~Dl~~~~~~--~~~~~~~-~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      +||+|+.+....  ...+... +......+++++||++|.|++++|+.+.+.+...
T Consensus       329 ~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~  384 (472)
T PRK03003        329 FNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESW  384 (472)
T ss_pred             EECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            999999642111  1111111 1111236899999999999999999998876544

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=7.5e-16  Score=104.40  Aligned_cols=130  Identities=17%  Similarity=0.245  Sum_probs=94.7

Q ss_pred             CCCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHH-HHHHHHhhcCCCCeEEEE
Q 043745            3 QPRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSR-WLKELRDHADSNIVIMMI   81 (174)
Q Consensus         3 ~pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv   81 (174)
                      .||+|+.-+ ++..+.+.+++||.+|+-..+..|+.||.+.|++|+|+|.+|.+...-... ++..+......+..++++
T Consensus        47 kPtigfnve-~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~  125 (182)
T KOG0072|consen   47 KPTIGFNVE-TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVF  125 (182)
T ss_pred             CCCCCcCcc-ccccccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEE
Confidence            377775432 344577889999999999999999999999999999999999876655533 333343333356889999


Q ss_pred             EeCCCCCCccCCCHH---HHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           82 GNKTDLKHLRAVATE---DAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        82 ~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      +||+|.......++.   ....-.+...+.++++||.+|+|+++.++|+.+.+..
T Consensus       126 anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~  180 (182)
T KOG0072|consen  126 ANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLKS  180 (182)
T ss_pred             eccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHhc
Confidence            999999763221111   1111122333789999999999999999999987754

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.65  E-value=1.1e-14  Score=101.08  Aligned_cols=115  Identities=37%  Similarity=0.568  Sum_probs=91.2

Q ss_pred             EEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCCh-hhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP-TTFENVS-RWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        12 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~-~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      +.+++..+.+.+||++|+..+..++..+++.++++++++|.... .++.... .|+..+......+.|+++++||.|+..
T Consensus        43 ~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  122 (161)
T TIGR00231        43 IEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRD  122 (161)
T ss_pred             EEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCc
Confidence            45666668899999999999999999999999999999999887 7777664 777776655544789999999999975


Q ss_pred             ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043745           90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI  127 (174)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l  127 (174)
                      .. ........+......+++++||+++.|++++|+++
T Consensus       123 ~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231       123 AK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             ch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence            33 33333344444445789999999999999999876

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.65  E-value=1.2e-15  Score=124.98  Aligned_cols=106  Identities=24%  Similarity=0.230  Sum_probs=76.2

Q ss_pred             EEEEEEeCCCchh--------hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           19 IKAQIWDTAGQER--------YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        19 ~~l~l~D~~G~~~--------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      ..+.||||+|.+.        +...+..+++.+|++|||||+++..++.. ..|...+..   .+.|+++|+||+|+...
T Consensus        86 ~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~  161 (472)
T PRK03003         86 RRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERG  161 (472)
T ss_pred             cEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCcc
Confidence            3578999999762        44556778899999999999998765543 334444433   36899999999999642


Q ss_pred             cCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           91 RAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      .   .+..+.+  .+++ .++++||++|.|++++|+++++.+..
T Consensus       162 ~---~~~~~~~--~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        162 E---ADAAALW--SLGLGEPHPVSALHGRGVGDLLDAVLAALPE  200 (472)
T ss_pred             c---hhhHHHH--hcCCCCeEEEEcCCCCCcHHHHHHHHhhccc
Confidence            1   1222222  2343 45789999999999999999988744

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.64  E-value=1.6e-15  Score=126.94  Aligned_cols=106  Identities=20%  Similarity=0.180  Sum_probs=80.2

Q ss_pred             EEEEEEeCCCchhhhhh------hHHhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           19 IKAQIWDTAGQERYRAI------TSAYYR--GALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~------~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      ..+++|||||++++...      .+.++.  ++|++++|+|.++.+.   ...+..++.+   .++|+++++||+|+.+.
T Consensus        41 ~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler---~l~l~~ql~~---~~~PiIIVlNK~Dl~~~  114 (591)
T TIGR00437        41 EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLER---NLYLTLQLLE---LGIPMILALNLVDEAEK  114 (591)
T ss_pred             eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchh---hHHHHHHHHh---cCCCEEEEEehhHHHHh
Confidence            45799999999876543      344443  7899999999987432   2233333332   36899999999999764


Q ss_pred             cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      +.+. .+.+.+.+.++++++++||++++|++++++++.+..
T Consensus       115 ~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~  154 (591)
T TIGR00437       115 KGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKAI  154 (591)
T ss_pred             CCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4443 456788888999999999999999999999998753

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK15494 era GTPase Era; Provisional

Probab=99.63  E-value=3.8e-15  Score=117.29  Aligned_cols=106  Identities=24%  Similarity=0.318  Sum_probs=74.3

Q ss_pred             EEEEEEeCCCchh-hhhhh-------HHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           19 IKAQIWDTAGQER-YRAIT-------SAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        19 ~~l~l~D~~G~~~-~~~~~-------~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      .++.||||||... +..+.       ...+.++|+++||+|..+  ++..+. .|+..+...   +.|+++|+||+|+..
T Consensus       100 ~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~  174 (339)
T PRK15494        100 TQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIES  174 (339)
T ss_pred             eEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCcc
Confidence            4689999999843 22221       234679999999999765  444543 455555433   457788999999964


Q ss_pred             ccCCCHHHHHHHHHHhC--CcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           90 LRAVATEDAQSYAEREG--LSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        90 ~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      .   ...+..+++....  ..++++||++|.|++++|+++.+.+.
T Consensus       175 ~---~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~  216 (339)
T PRK15494        175 K---YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAK  216 (339)
T ss_pred             c---cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCC
Confidence            2   2345555555544  57999999999999999998877543

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.62  E-value=9.4e-15  Score=119.16  Aligned_cols=116  Identities=15%  Similarity=0.086  Sum_probs=81.5

Q ss_pred             EEEEEEeCCCchh----hhhh---hHHhhccCCEEEEEEeCCCh----hhHHHHHHHHHHHHhhc-----------CCCC
Q 043745           19 IKAQIWDTAGQER----YRAI---TSAYYRGALGALLVYDVTKP----TTFENVSRWLKELRDHA-----------DSNI   76 (174)
Q Consensus        19 ~~l~l~D~~G~~~----~~~~---~~~~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~i~~~~-----------~~~~   76 (174)
                      ..+.|||+||...    ...+   .-.+++++|++|+|+|+++.    +.+..+..|..++..+.           ..+.
T Consensus       206 ~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~k  285 (500)
T PRK12296        206 TRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAER  285 (500)
T ss_pred             eEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCC
Confidence            5789999999532    1112   22346789999999999853    35555555555554432           1368


Q ss_pred             eEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745           77 VIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus        77 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                      |+|||+||+|+.+.+.+ .+.........+++++++||+++.|+++++.+|.+.+....
T Consensus       286 P~IVVlNKiDL~da~el-~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        286 PRLVVLNKIDVPDAREL-AEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             CEEEEEECccchhhHHH-HHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            99999999999754332 22233334455789999999999999999999998876644

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.61  E-value=1.9e-14  Score=120.68  Aligned_cols=113  Identities=23%  Similarity=0.300  Sum_probs=88.6

Q ss_pred             CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCC
Q 043745           15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVA   94 (174)
Q Consensus        15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~   94 (174)
                      ++..+.++||||||+.+|...+..++..+|++|+|+|+++.........|.... .   .++|+++|+||+|+....  .
T Consensus        70 dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~---~~lpiIvViNKiDl~~a~--~  143 (600)
T PRK05433         70 DGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E---NDLEIIPVLNKIDLPAAD--P  143 (600)
T ss_pred             CCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H---CCCCEEEEEECCCCCccc--H
Confidence            566889999999999999999999999999999999999876555555554332 2   268999999999996422  1


Q ss_pred             HHHHHHHHHHhCCc---EEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           95 TEDAQSYAEREGLS---FIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        95 ~~~~~~~~~~~~~~---~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      .....++.+.+++.   ++++||+++.|++++++++.+.+..
T Consensus       144 ~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~  185 (600)
T PRK05433        144 ERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPP  185 (600)
T ss_pred             HHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence            22334555556654   8999999999999999999887644

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.61  E-value=3.9e-15  Score=121.19  Aligned_cols=101  Identities=23%  Similarity=0.207  Sum_probs=77.2

Q ss_pred             EEEEEEeCCCchhhhhh--------hHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           19 IKAQIWDTAGQERYRAI--------TSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~--------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      ..+.+|||+|.+++...        ...+++++|++++|||++++.+++....|..      ..+.|+++|+||+|+.+.
T Consensus       263 ~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~  336 (449)
T PRK05291        263 IPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGE  336 (449)
T ss_pred             eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhcccc
Confidence            56899999998754332        2346789999999999999887776544433      236899999999999753


Q ss_pred             cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      ....        ...+.+++++||+++.|++++++++.+.+..
T Consensus       337 ~~~~--------~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        337 IDLE--------EENGKPVIRISAKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             chhh--------hccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence            3221        3345689999999999999999999988754

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=4.8e-16  Score=109.81  Aligned_cols=143  Identities=29%  Similarity=0.445  Sum_probs=114.4

Q ss_pred             CCCCccc--eeEEE-ECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeE
Q 043745            2 GQPRLGK--LCDFQ-VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVI   78 (174)
Q Consensus         2 g~pt~g~--~~~~~-~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi   78 (174)
                      +.||+|-  ...+. -+...+++..|||+|++.+..+.+-||-+....|++||++.+-.+.++..|...+.+.+. ++||
T Consensus        39 y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~-NiPi  117 (216)
T KOG0096|consen   39 YPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRE-NIPI  117 (216)
T ss_pred             ccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhc-CCCe
Confidence            4578882  22222 244469999999999999999999999999999999999999999999999999888776 7999


Q ss_pred             EEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 043745           79 MMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAP  147 (174)
Q Consensus        79 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~~~~~~~~~  147 (174)
                      ++.+||.|...++  ...+...+-+..++.++++||+++.|.+.-|-|+.+++...-..+-...+.-.|
T Consensus       118 v~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~LarKl~G~p~Lefva~paLaP  184 (216)
T KOG0096|consen  118 VLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLARKLTGDPSLEFVAMPALAP  184 (216)
T ss_pred             eeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHHhhhhcCCCCeEEEeccccCC
Confidence            9999999997643  234455666777899999999999999999999999887655444444444333

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.61  E-value=1e-14  Score=118.33  Aligned_cols=110  Identities=23%  Similarity=0.170  Sum_probs=76.3

Q ss_pred             EEEEEeCCCchhhhhh-----------hHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745           20 KAQIWDTAGQERYRAI-----------TSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus        20 ~l~l~D~~G~~~~~~~-----------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      .+.+|||+|..++...           ...+++.+|++++|+|+++..+..... ++..+..   .+.|+++|+||+|+.
T Consensus       221 ~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~  296 (429)
T TIGR03594       221 KYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLV  296 (429)
T ss_pred             EEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccC
Confidence            6889999997543321           134678999999999999876666543 3343333   268999999999997


Q ss_pred             CccCCCHHHH-HHHHHHh----CCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           89 HLRAVATEDA-QSYAERE----GLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        89 ~~~~~~~~~~-~~~~~~~----~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      +... ..++. ..+...+    +++++++||++|.|++++|+++.+.+...
T Consensus       297 ~~~~-~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~  346 (429)
T TIGR03594       297 KDEK-TREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENA  346 (429)
T ss_pred             CCHH-HHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            2111 11222 2222222    36899999999999999999998876543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.60  E-value=1.1e-14  Score=106.99  Aligned_cols=107  Identities=22%  Similarity=0.232  Sum_probs=76.4

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC-
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP----TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV-   93 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~-   93 (174)
                      .++.||||||+++|...+...+..+|++++|+|++++    ++++.+..    +....  ..|+++++||+|+...... 
T Consensus        83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~----~~~~~--~~~iiivvNK~Dl~~~~~~~  156 (203)
T cd01888          83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAA----LEIMG--LKHIIIVQNKIDLVKEEQAL  156 (203)
T ss_pred             cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHH----HHHcC--CCcEEEEEEchhccCHHHHH
Confidence            6789999999999988888888899999999999873    23332222    22221  2478999999999652211 


Q ss_pred             -CHHHHHHHHHHh---CCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           94 -ATEDAQSYAERE---GLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        94 -~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                       ..++++++....   +++++++||+++.|++++|+.+.+.+
T Consensus       157 ~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         157 ENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             HHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence             113334444332   57899999999999999999887643

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.60  E-value=1.6e-14  Score=100.90  Aligned_cols=101  Identities=20%  Similarity=0.159  Sum_probs=76.0

Q ss_pred             EEEEEEEeCCCchhhhh--------hhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           18 TIKAQIWDTAGQERYRA--------ITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~--------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      ...+.+|||+|...+..        ....++.++|++++|+|+++..+......|..      ....|+++++||+|+.+
T Consensus        48 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~  121 (157)
T cd04164          48 GIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLP  121 (157)
T ss_pred             CEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCC
Confidence            35789999999765432        12346779999999999998777766544322      23689999999999976


Q ss_pred             ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      ....       .....+.+++++||+++.|++++++++...+
T Consensus       122 ~~~~-------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         122 DSEL-------LSLLAGKPIIAISAKTGEGLDELKEALLELA  156 (157)
T ss_pred             cccc-------ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence            4332       3344467899999999999999999987653

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.59  E-value=5.4e-15  Score=103.68  Aligned_cols=102  Identities=20%  Similarity=0.221  Sum_probs=70.3

Q ss_pred             EEEEEEeCCCchh------hhhhhHHhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           19 IKAQIWDTAGQER------YRAITSAYY--RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        19 ~~l~l~D~~G~~~------~~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      ..+.|+|+||...      .......++  .+.|++++|+|+++.+.-   .....++...   ++|+++++||+|...+
T Consensus        47 ~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~r~---l~l~~ql~e~---g~P~vvvlN~~D~a~~  120 (156)
T PF02421_consen   47 QQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLERN---LYLTLQLLEL---GIPVVVVLNKMDEAER  120 (156)
T ss_dssp             EEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHHHH---HHHHHHHHHT---TSSEEEEEETHHHHHH
T ss_pred             ceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHHHH---HHHHHHHHHc---CCCEEEEEeCHHHHHH
Confidence            5689999999432      123444454  589999999999874322   2333444443   6899999999998764


Q ss_pred             cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043745           91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI  127 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l  127 (174)
                      +.+.. +...+.+.+|++++.+||++++|++++++++
T Consensus       121 ~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  121 KGIEI-DAEKLSERLGVPVIPVSARTGEGIDELKDAI  156 (156)
T ss_dssp             TTEEE--HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred             cCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence            44322 4677788899999999999999999998864

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK11058 GTPase HflX; Provisional

Probab=99.58  E-value=5.2e-14  Score=113.69  Aligned_cols=110  Identities=19%  Similarity=0.128  Sum_probs=77.4

Q ss_pred             EEEEEeCCCchhh--hhhh------HHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCcc
Q 043745           20 KAQIWDTAGQERY--RAIT------SAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLR   91 (174)
Q Consensus        20 ~l~l~D~~G~~~~--~~~~------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~   91 (174)
                      .+.||||+|..+.  ...+      ...+..+|++++|+|++++.+++.+..|...+......++|+++|+||+|+.+..
T Consensus       246 ~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~  325 (426)
T PRK11058        246 ETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDF  325 (426)
T ss_pred             eEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCch
Confidence            5689999997331  1222      2346899999999999998888777655554444433468999999999996421


Q ss_pred             CCCHHHHHHHHHHhCCc-EEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           92 AVATEDAQSYAEREGLS-FIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        92 ~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      .   ....  ....+.+ ++++||++|.|++++++++.+.+...
T Consensus       326 ~---~~~~--~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~~  364 (426)
T PRK11058        326 E---PRID--RDEENKPIRVWLSAQTGAGIPLLFQALTERLSGE  364 (426)
T ss_pred             h---HHHH--HHhcCCCceEEEeCCCCCCHHHHHHHHHHHhhhc
Confidence            1   1111  1124555 48899999999999999999887543

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.58  E-value=3.1e-14  Score=113.80  Aligned_cols=113  Identities=18%  Similarity=0.096  Sum_probs=83.4

Q ss_pred             EEEEEeCCCchhh-------hhhhHHhhccCCEEEEEEeCC---ChhhHHHHHHHHHHHHhhcC--CCCeEEEEEeCCCC
Q 043745           20 KAQIWDTAGQERY-------RAITSAYYRGALGALLVYDVT---KPTTFENVSRWLKELRDHAD--SNIVIMMIGNKTDL   87 (174)
Q Consensus        20 ~l~l~D~~G~~~~-------~~~~~~~~~~~d~ii~v~d~~---~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl   87 (174)
                      .+.|+||||...-       ......+++++|++++|+|++   +.+.++.+..|+..+..+..  .+.|+++|+||+|+
T Consensus       208 ~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl  287 (390)
T PRK12298        208 SFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDL  287 (390)
T ss_pred             EEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCcc
Confidence            4899999997431       111223578999999999998   45677777888888776542  35899999999999


Q ss_pred             CCccCCCHHHHHHHHHHhC--CcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           88 KHLRAVATEDAQSYAEREG--LSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      .....+ .+..+++...++  .+++.+||+++.|++++++++.+.+..
T Consensus       288 ~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~  334 (390)
T PRK12298        288 LDEEEA-EERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEE  334 (390)
T ss_pred             CChHHH-HHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence            653322 344455555554  478999999999999999999887654

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.58  E-value=3.1e-14  Score=118.93  Aligned_cols=103  Identities=17%  Similarity=0.227  Sum_probs=75.5

Q ss_pred             EEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHH
Q 043745           20 KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQ   99 (174)
Q Consensus        20 ~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~   99 (174)
                      .+.|||||||+.|..++...+..+|++++|||+++...-+.... +.....   .++|+++++||+|+.+.   ..++..
T Consensus       136 ~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~-i~~~~~---~~vPiIVviNKiDl~~~---~~e~v~  208 (587)
T TIGR00487       136 MITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEA-ISHAKA---ANVPIIVAINKIDKPEA---NPDRVK  208 (587)
T ss_pred             EEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHH-HHHHHH---cCCCEEEEEECcccccC---CHHHHH
Confidence            68999999999999999999999999999999987422221111 222222   36899999999999642   233333


Q ss_pred             HHHHHhC---------CcEEEEeccCCCCHHHHHHHHHH
Q 043745          100 SYAEREG---------LSFIETSALEAINVEKAFQTILS  129 (174)
Q Consensus       100 ~~~~~~~---------~~~~~~Sa~~~~~i~~v~~~l~~  129 (174)
                      ..+...+         .+++++||++|.|++++|+++..
T Consensus       209 ~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       209 QELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL  247 (587)
T ss_pred             HHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence            3333222         46999999999999999999874

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.57  E-value=4.3e-14  Score=106.66  Aligned_cols=96  Identities=19%  Similarity=0.259  Sum_probs=79.5

Q ss_pred             hhhhhhhHHhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCc
Q 043745           30 ERYRAITSAYYRGALGALLVYDVTKPT-TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLS  108 (174)
Q Consensus        30 ~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  108 (174)
                      ++|..+.+.+++++|++++|||+++++ +++.+.+|+..+..   .++|+++|+||+||.+.+.+..+..+.+ ...+++
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~   99 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ   99 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence            678888899999999999999999887 89999999986654   3689999999999975444433444444 357899


Q ss_pred             EEEEeccCCCCHHHHHHHHHH
Q 043745          109 FIETSALEAINVEKAFQTILS  129 (174)
Q Consensus       109 ~~~~Sa~~~~~i~~v~~~l~~  129 (174)
                      ++++||+++.|++++|+.+..
T Consensus       100 v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157       100 VLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             EEEEecCCchhHHHHHhhhcC
Confidence            999999999999999998764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.57  E-value=7.4e-15  Score=99.35  Aligned_cols=120  Identities=27%  Similarity=0.372  Sum_probs=90.6

Q ss_pred             CCccce-eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEE
Q 043745            4 PRLGKL-CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMI   81 (174)
Q Consensus         4 pt~g~~-~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv   81 (174)
                      ||.|++ +.+..++ .+.+++||.+|+...+..|..||.+.|++|||+|.+|...|+++.+.+-++..-.. ..+|+++.
T Consensus        47 pT~GFn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIf  125 (185)
T KOG0074|consen   47 PTNGFNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIF  125 (185)
T ss_pred             ccCCcceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeeh
Confidence            788843 3444433 48899999999999999999999999999999999999999988655555544333 57999999


Q ss_pred             EeCCCCCCccCCCHHHHHHHHHHh--------CCcEEEEeccCCCCHHHHHHHHHH
Q 043745           82 GNKTDLKHLRAVATEDAQSYAERE--------GLSFIETSALEAINVEKAFQTILS  129 (174)
Q Consensus        82 ~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~~i~~v~~~l~~  129 (174)
                      +||+|+....     ...+.+.++        -+.+-++||.+++|+.+-.+|+..
T Consensus       126 ankQdlltaa-----~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~wv~s  176 (185)
T KOG0074|consen  126 ANKQDLLTAA-----KVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDWVQS  176 (185)
T ss_pred             hhhhHHHhhc-----chHHHHHhcchhhhhhceEEeeeCccccccCccCcchhhhc
Confidence            9999986422     222222222        356788999999998888777653

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.56  E-value=7.3e-14  Score=118.67  Aligned_cols=110  Identities=23%  Similarity=0.256  Sum_probs=80.0

Q ss_pred             CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCC
Q 043745           15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVA   94 (174)
Q Consensus        15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~   94 (174)
                      ++....+.||||||++.|..++..++..+|++|+|+|+++.........| ..+..   .++|+|+++||+|+....   
T Consensus       291 ~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I-~~~k~---~~iPiIVViNKiDl~~~~---  363 (742)
T CHL00189        291 KDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAI-NYIQA---ANVPIIVAINKIDKANAN---  363 (742)
T ss_pred             cCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHH-HHHHh---cCceEEEEEECCCccccC---
Confidence            34567899999999999999999999999999999999874222222112 22222   368999999999997521   


Q ss_pred             HHHHHHH-------HHHhC--CcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           95 TEDAQSY-------AEREG--LSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        95 ~~~~~~~-------~~~~~--~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      .++....       ...++  ++++++||++|.|++++|+++....
T Consensus       364 ~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        364 TERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             HHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence            2222211       22333  6899999999999999999887763

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.56  E-value=7.9e-14  Score=113.35  Aligned_cols=100  Identities=23%  Similarity=0.197  Sum_probs=73.5

Q ss_pred             EEEEEEeCCCchh--------hhhhhHHhhccCCEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745           19 IKAQIWDTAGQER--------YRAITSAYYRGALGALLVYDVTKPTTFE--NVSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus        19 ~~l~l~D~~G~~~--------~~~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      ..+.||||+|++.        +......++..+|+++||+|+.+..+..  .+..|+..   .   +.|+++|+||+|+.
T Consensus        49 ~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~---~---~~piilv~NK~D~~  122 (435)
T PRK00093         49 REFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRK---S---NKPVILVVNKVDGP  122 (435)
T ss_pred             cEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH---c---CCcEEEEEECccCc
Confidence            6789999999886        3334566788999999999998754332  33444432   2   68999999999975


Q ss_pred             CccCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHH
Q 043745           89 HLRAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILS  129 (174)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~  129 (174)
                      +.    .....++ ..+++ .++++||+++.|++++|+++..
T Consensus       123 ~~----~~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~  159 (435)
T PRK00093        123 DE----EADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILE  159 (435)
T ss_pred             cc----hhhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence            41    1223333 35566 4899999999999999999887

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.55  E-value=2.5e-15  Score=105.97  Aligned_cols=120  Identities=33%  Similarity=0.581  Sum_probs=100.9

Q ss_pred             CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC----CCCeEEEEEeCCCCCCcc
Q 043745           16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD----SNIVIMMIGNKTDLKHLR   91 (174)
Q Consensus        16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~~   91 (174)
                      ...++++|||..||++|..+...||+.+++.++|||+++.-+|+....|...+.....    .++|+++.+||+|....-
T Consensus        72 ~t~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a  151 (229)
T KOG4423|consen   72 KTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSA  151 (229)
T ss_pred             HHHHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHh
Confidence            3446789999999999999999999999999999999999999999999998754332    578999999999997532


Q ss_pred             C-CCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745           92 A-VATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus        92 ~-~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                      . ........+.++.|. .++++|++.+.++.++...+++.++-..
T Consensus       152 ~~~~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~~lvnd  197 (229)
T KOG4423|consen  152 KNEATRQFDNFKKENGFEGWTETSAKENKNIPEAQRELVEKILVND  197 (229)
T ss_pred             hhhhHHHHHHHHhccCccceeeeccccccChhHHHHHHHHHHHhhc
Confidence            1 123566777888886 5999999999999999999999887654

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.55  E-value=8.4e-14  Score=116.53  Aligned_cols=108  Identities=18%  Similarity=0.126  Sum_probs=81.9

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCCCccCC-
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTK---PTTFENVSRWLKELRDHADSNIV-IMMIGNKTDLKHLRAV-   93 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~-   93 (174)
                      ..+.|||+||+++|.......+.++|++++|+|+++   +++++.+    ..+...   ++| +++++||+|+.+...+ 
T Consensus        50 ~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl----~il~~l---gi~~iIVVlNK~Dlv~~~~~~  122 (581)
T TIGR00475        50 YRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHL----AVLDLL---GIPHTIVVITKADRVNEEEIK  122 (581)
T ss_pred             EEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHH----HHHHHc---CCCeEEEEEECCCCCCHHHHH
Confidence            678999999999999988888999999999999998   3444333    222222   567 9999999999753322 


Q ss_pred             -CHHHHHHHHHHh----CCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           94 -ATEDAQSYAERE----GLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        94 -~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                       ..+++++++...    +++++++||++|.|++++++.+...+..
T Consensus       123 ~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       123 RTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLES  167 (581)
T ss_pred             HHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence             234455666554    4789999999999999999987766543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.55  E-value=1.9e-13  Score=96.49  Aligned_cols=107  Identities=25%  Similarity=0.406  Sum_probs=88.5

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHH
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDA   98 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~   98 (174)
                      ..++|++||||++|+.+|+.+.++++++|+++|.+.+..+ .....+..+....  .+|++|++||+||.+.  ...++.
T Consensus        68 ~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a--~ppe~i  142 (187)
T COG2229          68 TGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFDA--LPPEKI  142 (187)
T ss_pred             ceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCCC--CCHHHH
Confidence            4589999999999999999999999999999999999888 5556666655443  3999999999999874  345666


Q ss_pred             HHHHHHh--CCcEEEEeccCCCCHHHHHHHHHHH
Q 043745           99 QSYAERE--GLSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        99 ~~~~~~~--~~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      +++....  .+++++.+|..+.+..+.++.+...
T Consensus       143 ~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         143 REALKLELLSVPVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             HHHHHhccCCCceeeeecccchhHHHHHHHHHhh
Confidence            6665544  7899999999999999988877655

>cd01889 SelB_euk SelB subfamily

Probab=99.54  E-value=1.1e-13  Score=100.75  Aligned_cols=114  Identities=15%  Similarity=0.040  Sum_probs=77.2

Q ss_pred             CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC--C
Q 043745           16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA--V   93 (174)
Q Consensus        16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~--~   93 (174)
                      +....+.||||||+..+..........+|++++|+|+++.........|.  +....  +.|+++++||+|+.....  .
T Consensus        65 ~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~--~~~~iiv~NK~Dl~~~~~~~~  140 (192)
T cd01889          65 EENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL--CKKLIVVLNKIDLIPEEERER  140 (192)
T ss_pred             ccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc--CCCEEEEEECcccCCHHHHHH
Confidence            33678999999999766444334456789999999998754444333232  12222  579999999999864221  1


Q ss_pred             CHHHHHHHHH-------HhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           94 ATEDAQSYAE-------REGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        94 ~~~~~~~~~~-------~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      ..++.++...       ..+++++++||+++.|++++++++.+++..
T Consensus       141 ~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~  187 (192)
T cd01889         141 KIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL  187 (192)
T ss_pred             HHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence            1222222211       135789999999999999999999888764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.54  E-value=6.7e-14  Score=93.93  Aligned_cols=75  Identities=36%  Similarity=0.713  Sum_probs=62.4

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHH---HHHHHHhhcCCCCeEEEEEeCCC
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSR---WLKELRDHADSNIVIMMIGNKTD   86 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~---~~~~i~~~~~~~~piilv~nK~D   86 (174)
                      ...+......+.|||++|++.+...+..++.++|++++|||+++.++++.+..   |+..+..... ++|+++|+||.|
T Consensus        42 ~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~-~~piilv~nK~D  119 (119)
T PF08477_consen   42 VIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDK-NIPIILVGNKSD  119 (119)
T ss_dssp             EEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSS-CSEEEEEEE-TC
T ss_pred             EEEecCCceEEEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCC-CCCEEEEEeccC
Confidence            34567777779999999999999988888999999999999999999998744   5666655444 699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.54  E-value=1.1e-13  Score=112.28  Aligned_cols=103  Identities=23%  Similarity=0.237  Sum_probs=75.5

Q ss_pred             EEEEEEeCCCc--------hhhhhhhHHhhccCCEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745           19 IKAQIWDTAGQ--------ERYRAITSAYYRGALGALLVYDVTKPTTFEN--VSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus        19 ~~l~l~D~~G~--------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      ..+.+|||||.        +.+......+++.+|+++||+|+.+..+...  +..|+.   ..   +.|+++|+||+|+.
T Consensus        47 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~---~~---~~piilVvNK~D~~  120 (429)
T TIGR03594        47 REFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLR---KS---GKPVILVANKIDGK  120 (429)
T ss_pred             eEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHH---Hh---CCCEEEEEECccCC
Confidence            45899999996        3445566778899999999999987543332  333433   22   68999999999987


Q ss_pred             CccCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           89 HLRAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      +...    ...+ ...++. +++++||+++.|++++++++.+.+.
T Consensus       121 ~~~~----~~~~-~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~  160 (429)
T TIGR03594       121 KEDA----VAAE-FYSLGFGEPIPISAEHGRGIGDLLDAILELLP  160 (429)
T ss_pred             cccc----cHHH-HHhcCCCCeEEEeCCcCCChHHHHHHHHHhcC
Confidence            5332    1222 345676 7999999999999999999887663

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.54  E-value=1.9e-13  Score=98.41  Aligned_cols=110  Identities=20%  Similarity=0.244  Sum_probs=82.4

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC--CH
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV--AT   95 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~   95 (174)
                      ...+.||||+|+..+...+..++..+|++++|+|+.+..+... ..++..+..   .+.|+++++||+|+......  ..
T Consensus        61 ~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~  136 (189)
T cd00881          61 DRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVL  136 (189)
T ss_pred             CEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHH
Confidence            4678999999999999999999999999999999987654432 334444433   36899999999999752221  12


Q ss_pred             HHHHHHHHH--------------hCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           96 EDAQSYAER--------------EGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        96 ~~~~~~~~~--------------~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      +..++....              ...+++++||+++.|+++++.++.+.+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         137 REIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             HHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence            233333332              246899999999999999999988874

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.53  E-value=7.6e-14  Score=119.40  Aligned_cols=105  Identities=20%  Similarity=0.214  Sum_probs=76.3

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC-CC
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP---TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA-VA   94 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-~~   94 (174)
                      ..+.||||||++.|..++...+..+|++|||||+++.   ++.+.   | ....   ..++|+|+++||+|+..... ..
T Consensus       337 ~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~---i-~~a~---~~~vPiIVviNKiDl~~a~~e~V  409 (787)
T PRK05306        337 GKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEA---I-NHAK---AAGVPIIVAINKIDKPGANPDRV  409 (787)
T ss_pred             EEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHH---H-HHHH---hcCCcEEEEEECccccccCHHHH
Confidence            5689999999999999999999999999999999874   33322   2 2222   23689999999999965210 00


Q ss_pred             HHHHH---HHHHHhC--CcEEEEeccCCCCHHHHHHHHHHH
Q 043745           95 TEDAQ---SYAEREG--LSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        95 ~~~~~---~~~~~~~--~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      ..++.   .+...++  ++++++||++|.|++++|+++...
T Consensus       410 ~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~  450 (787)
T PRK05306        410 KQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ  450 (787)
T ss_pred             HHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence            11111   1223333  689999999999999999998764

>PRK00089 era GTPase Era; Reviewed

Probab=99.52  E-value=1.5e-13  Score=106.32  Aligned_cols=110  Identities=17%  Similarity=0.145  Sum_probs=75.0

Q ss_pred             EEEEEEEeCCCchhh--------hhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           18 TIKAQIWDTAGQERY--------RAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~--------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      ..++.||||||....        .......+.++|++++|+|+++...- ....++..+..   .+.|+++|+||+|+..
T Consensus        52 ~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~-~~~~i~~~l~~---~~~pvilVlNKiDl~~  127 (292)
T PRK00089         52 DAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGP-GDEFILEKLKK---VKTPVILVLNKIDLVK  127 (292)
T ss_pred             CceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCh-hHHHHHHHHhh---cCCCEEEEEECCcCCC
Confidence            367899999996432        22334467899999999999883111 11222233322   2589999999999974


Q ss_pred             ccCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           90 LRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        90 ~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      ...........+....+ .+++++||+++.|++++++++.+.+
T Consensus       128 ~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l  170 (292)
T PRK00089        128 DKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYL  170 (292)
T ss_pred             CHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhC
Confidence            32222334445555444 5799999999999999999888765

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.50  E-value=3.3e-13  Score=115.83  Aligned_cols=111  Identities=15%  Similarity=0.095  Sum_probs=83.4

Q ss_pred             ECCeEEEEEEEeCCCchhhhh----------hhHHhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEE
Q 043745           14 VEGRTIKAQIWDTAGQERYRA----------ITSAYY--RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMI   81 (174)
Q Consensus        14 ~~~~~~~l~l~D~~G~~~~~~----------~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv   81 (174)
                      +......+++|||||+.++..          ....++  ..+|++++|+|.++.+..   ..|..++.+.   ++|++++
T Consensus        45 ~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~---giPvIvV  118 (772)
T PRK09554         45 FSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERN---LYLTLQLLEL---GIPCIVA  118 (772)
T ss_pred             EEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhh---HHHHHHHHHc---CCCEEEE
Confidence            445556789999999876642          123343  489999999999885432   2344455443   6899999


Q ss_pred             EeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           82 GNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        82 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      +||+|+.+.+.+ ..+.+++.+.+|++++++||.+++|++++.+.+.+..
T Consensus       119 lNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        119 LNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             EEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence            999999764544 3556788888999999999999999999998887654

>cd00880 Era_like Era (E

Probab=99.50  E-value=2.4e-13  Score=94.47  Aligned_cols=109  Identities=19%  Similarity=0.153  Sum_probs=78.1

Q ss_pred             EEEEEEEeCCCchhhhh-------hhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           18 TIKAQIWDTAGQERYRA-------ITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~-------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      ...+.+||++|...+..       ....++..+|++++|+|..+........ |......   .+.|+++++||.|+...
T Consensus        44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~~---~~~~~ivv~nK~D~~~~  119 (163)
T cd00880          44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELLRE---RGKPVLLVLNKIDLLPE  119 (163)
T ss_pred             CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh---cCCeEEEEEEccccCCh
Confidence            35689999999876543       3445788999999999999887666554 3333332   36899999999998753


Q ss_pred             cCCCHH---HHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745           91 RAVATE---DAQSYAEREGLSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        91 ~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      ......   .........+.+++++||+++.|++++++++.+.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~  162 (163)
T cd00880         120 EEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA  162 (163)
T ss_pred             hhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence            322111   1122233345789999999999999999998765

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.50  E-value=2.6e-13  Score=116.19  Aligned_cols=106  Identities=21%  Similarity=0.170  Sum_probs=73.8

Q ss_pred             EEEEEEeCCCchh--------hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           19 IKAQIWDTAGQER--------YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        19 ~~l~l~D~~G~~~--------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      ..+.||||+|.+.        +......+++.+|++|||+|+++...... ..|...++.   .+.|+++|+||+|+...
T Consensus       323 ~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~  398 (712)
T PRK09518        323 TDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQAS  398 (712)
T ss_pred             EEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccc
Confidence            4688999999763        34455667899999999999986422111 234444443   36899999999998642


Q ss_pred             cCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           91 RAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      .    ....++. .++. ..+++||++|.|+.++|+++++.+..
T Consensus       399 ~----~~~~~~~-~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        399 E----YDAAEFW-KLGLGEPYPISAMHGRGVGDLLDEALDSLKV  437 (712)
T ss_pred             h----hhHHHHH-HcCCCCeEEEECCCCCCchHHHHHHHHhccc
Confidence            1    1222221 2343 46789999999999999999987744

>cd04163 Era Era subfamily

Probab=99.49  E-value=5.1e-13  Score=93.79  Aligned_cols=110  Identities=18%  Similarity=0.160  Sum_probs=75.3

Q ss_pred             eEEEEEEEeCCCchhhh--------hhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745           17 RTIKAQIWDTAGQERYR--------AITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus        17 ~~~~l~l~D~~G~~~~~--------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      ....+.+|||+|.....        ......+..+|++++|+|+++..+. ....++..+...   +.|+++++||+|+.
T Consensus        49 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~---~~~~iiv~nK~Dl~  124 (168)
T cd04163          49 DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGE-GDEFILELLKKS---KTPVILVLNKIDLV  124 (168)
T ss_pred             CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCc-hHHHHHHHHHHh---CCCEEEEEEchhcc
Confidence            34678899999975432        2334567899999999999986211 112233333332   58999999999997


Q ss_pred             CccCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHH
Q 043745           89 HLRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      .......+....+....+ .+++++|++++.+++++++.+.+.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~  167 (168)
T cd04163         125 KDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY  167 (168)
T ss_pred             ccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence            432222333444444443 689999999999999999988764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01895 EngA2 EngA2 subfamily

Probab=99.49  E-value=9.4e-13  Score=93.23  Aligned_cols=108  Identities=24%  Similarity=0.198  Sum_probs=73.0

Q ss_pred             EEEEEEeCCCchhh----------hh-hhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745           19 IKAQIWDTAGQERY----------RA-ITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL   87 (174)
Q Consensus        19 ~~l~l~D~~G~~~~----------~~-~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl   87 (174)
                      ..+.+|||+|....          .. ....++.++|++++|+|+.++.+.... .++..+..   .+.|+++++||+|+
T Consensus        50 ~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl  125 (174)
T cd01895          50 KKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDL  125 (174)
T ss_pred             eeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEecccc
Confidence            34789999996432          11 123356799999999999988665543 23333332   25899999999999


Q ss_pred             CCccCCCHHH-HHHHHHHh----CCcEEEEeccCCCCHHHHHHHHHHH
Q 043745           88 KHLRAVATED-AQSYAERE----GLSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        88 ~~~~~~~~~~-~~~~~~~~----~~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      .+......++ .+.+...+    ..+++++||+++.|++++++++.+.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         126 VEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             CCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence            7643222222 22333333    3689999999999999999988754

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.48  E-value=5.5e-13  Score=96.78  Aligned_cols=113  Identities=24%  Similarity=0.260  Sum_probs=80.2

Q ss_pred             CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC-CC
Q 043745           16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA-VA   94 (174)
Q Consensus        16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-~~   94 (174)
                      .....+.|+|+||+.+|.......+..+|++|+|+|+.+...... .+.+..+...   ++|+++++||+|+...+. ..
T Consensus        67 ~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~  142 (188)
T PF00009_consen   67 ENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILREL---GIPIIVVLNKMDLIEKELEEI  142 (188)
T ss_dssp             ESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHHT---T-SEEEEEETCTSSHHHHHHH
T ss_pred             ccccceeecccccccceeecccceecccccceeeeeccccccccc-cccccccccc---ccceEEeeeeccchhhhHHHH
Confidence            556789999999999999888888999999999999987643322 2333434333   688999999999973211 00


Q ss_pred             HHHHH-HHHHHhC------CcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           95 TEDAQ-SYAEREG------LSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        95 ~~~~~-~~~~~~~------~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      .++.. .+.+..+      ++++++||.+|.|++++++.+.+.+.
T Consensus       143 ~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  143 IEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             HHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             HHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            11122 3333332      47999999999999999999887754

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.48  E-value=1.3e-12  Score=111.98  Aligned_cols=108  Identities=16%  Similarity=0.169  Sum_probs=75.2

Q ss_pred             EEEEEeCCCch----------hhhhhh-HHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745           20 KAQIWDTAGQE----------RYRAIT-SAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus        20 ~l~l~D~~G~~----------~~~~~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      .+.||||+|..          .|..+. ..+++.+|++++|+|+++..++..+. ++..+..   .++|+++|+||+|+.
T Consensus       499 ~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~  574 (712)
T PRK09518        499 DWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLM  574 (712)
T ss_pred             EEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcC
Confidence            46799999953          233222 34578999999999999987777664 3344433   368999999999996


Q ss_pred             CccCCCHHHHHH-HHHHh----CCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           89 HLRAVATEDAQS-YAERE----GLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        89 ~~~~~~~~~~~~-~~~~~----~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      +...  .+..+. +...+    ..+++++||++|.|++++|+.+.+.+..
T Consensus       575 ~~~~--~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        575 DEFR--RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALES  622 (712)
T ss_pred             ChhH--HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5221  122222 22222    2467999999999999999999887765

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.46  E-value=5.8e-13  Score=111.54  Aligned_cols=118  Identities=16%  Similarity=0.185  Sum_probs=86.6

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      ...+..+...++||||||+++|...+..++..+|++++|+|+.+.. ......|+..+...   ++|+|+++||+|+...
T Consensus        56 ~~~v~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a  131 (594)
T TIGR01394        56 NTAIRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL---GLKPIVVINKIDRPSA  131 (594)
T ss_pred             eEEEEECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC---CCCEEEEEECCCCCCc
Confidence            3445555688999999999999999999999999999999998742 34445666665543   6899999999999653


Q ss_pred             cCC-CHHHHHHHHH-------HhCCcEEEEeccCCC----------CHHHHHHHHHHHHH
Q 043745           91 RAV-ATEDAQSYAE-------REGLSFIETSALEAI----------NVEKAFQTILSEIY  132 (174)
Q Consensus        91 ~~~-~~~~~~~~~~-------~~~~~~~~~Sa~~~~----------~i~~v~~~l~~~i~  132 (174)
                      +.. ...+...+..       ++.++++.+||+++.          |+..+|+.+++.+.
T Consensus       132 ~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP  191 (594)
T TIGR01394       132 RPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP  191 (594)
T ss_pred             CHHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence            211 1233334332       235689999999995          78888888777654

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.46  E-value=1.9e-12  Score=95.14  Aligned_cols=73  Identities=19%  Similarity=0.326  Sum_probs=60.0

Q ss_pred             eEEEEEEEeCCCchhhhhhhHHhhccC-CEEEEEEeCCCh-hhHHHHHHHHHHHHhh---cCCCCeEEEEEeCCCCCC
Q 043745           17 RTIKAQIWDTAGQERYRAITSAYYRGA-LGALLVYDVTKP-TTFENVSRWLKELRDH---ADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~-d~ii~v~d~~~~-~s~~~~~~~~~~i~~~---~~~~~piilv~nK~Dl~~   89 (174)
                      ....+.+||+||+.+++..+..+++++ +++|||+|+++. .++..+..|+..+...   ....+|+++++||+|+..
T Consensus        46 ~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          46 KGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            356789999999999999999999999 999999999997 6777777766554322   124799999999999864

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>COG1159 Era GTPase [General function prediction only]

Probab=99.45  E-value=8.4e-13  Score=100.02  Aligned_cols=109  Identities=17%  Similarity=0.167  Sum_probs=72.5

Q ss_pred             EEEEEEEeCCCchh--------hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHH-HHHHHhhcCCCCeEEEEEeCCCCC
Q 043745           18 TIKAQIWDTAGQER--------YRAITSAYYRGALGALLVYDVTKPTTFENVSRW-LKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus        18 ~~~l~l~D~~G~~~--------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~-~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      ..++.|+||||...        ........+.++|+++||+|+++.-.  .-.+| ++.+..   .+.|+++++||+|..
T Consensus        53 ~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~--~~d~~il~~lk~---~~~pvil~iNKID~~  127 (298)
T COG1159          53 NAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWG--PGDEFILEQLKK---TKTPVILVVNKIDKV  127 (298)
T ss_pred             CceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCC--ccHHHHHHHHhh---cCCCeEEEEEccccC
Confidence            56899999999532        22334556789999999999987422  12223 333333   257999999999987


Q ss_pred             CccCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           89 HLRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      .......+....+..... ..++++||+++.|++.+.+.+...+
T Consensus       128 ~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~L  171 (298)
T COG1159         128 KPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYL  171 (298)
T ss_pred             CcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhC
Confidence            644421222333333333 4799999999999999887666543

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.45  E-value=1.6e-12  Score=103.56  Aligned_cols=102  Identities=18%  Similarity=0.136  Sum_probs=73.3

Q ss_pred             EEEEEeCCCchhhh---------hhhHHhhccCCEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745           20 KAQIWDTAGQERYR---------AITSAYYRGALGALLVYDVTKPT--TFENVSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus        20 ~l~l~D~~G~~~~~---------~~~~~~~~~~d~ii~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      .+.+.||+|.+...         ......+..||++|||+|....-  ..+.+.+|+.    .  .++|+++|+||+|-.
T Consensus        52 ~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr----~--~~kpviLvvNK~D~~  125 (444)
T COG1160          52 EFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILR----R--SKKPVILVVNKIDNL  125 (444)
T ss_pred             eEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH----h--cCCCEEEEEEcccCc
Confidence            48999999976322         23455678999999999998742  2333344433    1  268999999999975


Q ss_pred             CccCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           89 HLRAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      +     .++...-...+|+ +++.+||.+|.|+.+++++++..+.
T Consensus       126 ~-----~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~  165 (444)
T COG1160         126 K-----AEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLP  165 (444)
T ss_pred             h-----hhhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcC
Confidence            3     2233333445664 7899999999999999999998874

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.45  E-value=8.7e-13  Score=107.28  Aligned_cols=111  Identities=26%  Similarity=0.222  Sum_probs=74.6

Q ss_pred             EEEEEEeCCCchh----------hhhh-hHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745           19 IKAQIWDTAGQER----------YRAI-TSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL   87 (174)
Q Consensus        19 ~~l~l~D~~G~~~----------~~~~-~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl   87 (174)
                      ..+.+|||+|..+          |... ...+++.+|++|+|+|+++..+.... .++..+..   .+.|+++++||+|+
T Consensus       221 ~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~---~~~~~ivv~NK~Dl  296 (435)
T PRK00093        221 QKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDL-RIAGLALE---AGRALVIVVNKWDL  296 (435)
T ss_pred             eeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCcEEEEEECccC
Confidence            4578999999632          2211 22467899999999999987666554 23333333   25899999999999


Q ss_pred             CCccCCCHHHHHHHHHHh----CCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           88 KHLRAVATEDAQSYAERE----GLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      .+.... .+....+...+    ..+++++||+++.|++++|+.+.+.....
T Consensus       297 ~~~~~~-~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~  346 (435)
T PRK00093        297 VDEKTM-EEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYENA  346 (435)
T ss_pred             CCHHHH-HHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            742211 11112222222    36899999999999999999988765543

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.45  E-value=8.6e-13  Score=107.08  Aligned_cols=111  Identities=19%  Similarity=0.126  Sum_probs=77.4

Q ss_pred             EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHH--HHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV--SRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      .+......+.|||+||+++|.......+..+|++++|+|+++.+++...  ..++. +..... ..|+++++||+|+.+.
T Consensus        79 ~~~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~~-~~~iIVviNK~Dl~~~  156 (426)
T TIGR00483        79 KFETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTLG-INQLIVAINKMDSVNY  156 (426)
T ss_pred             EEccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHcC-CCeEEEEEEChhccCc
Confidence            3455567899999999999887777778899999999999987543211  12222 222222 3579999999999641


Q ss_pred             cC----CCHHHHHHHHHHhC-----CcEEEEeccCCCCHHHHHH
Q 043745           91 RA----VATEDAQSYAEREG-----LSFIETSALEAINVEKAFQ  125 (174)
Q Consensus        91 ~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~v~~  125 (174)
                      ..    ...++++.+++..+     ++++++||+++.|+.+.+.
T Consensus       157 ~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~  200 (426)
T TIGR00483       157 DEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE  200 (426)
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence            11    12345666676665     5799999999999987543

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.44  E-value=1.8e-12  Score=108.34  Aligned_cols=108  Identities=19%  Similarity=0.151  Sum_probs=76.3

Q ss_pred             EEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC----
Q 043745           21 AQIWDTAGQERYRAITSAYYRGALGALLVYDVTK---PTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV----   93 (174)
Q Consensus        21 l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~----   93 (174)
                      +.||||||++.|..++..++..+|+++||||+++   +++++.+.    .+..   .++|+++++||+|+......    
T Consensus        71 l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~  143 (590)
T TIGR00491        71 LLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGR  143 (590)
T ss_pred             EEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCc
Confidence            8899999999999999999999999999999987   45554432    2222   26899999999999631100    


Q ss_pred             --------CHHH------------HHHHHH------------Hh--CCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745           94 --------ATED------------AQSYAE------------RE--GLSFIETSALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus        94 --------~~~~------------~~~~~~------------~~--~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                              ....            ...+..            .+  .++++++||++|+|+++++.++.......+
T Consensus       144 ~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l  219 (590)
T TIGR00491       144 PFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYL  219 (590)
T ss_pred             hHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHh
Confidence                    0000            001110            11  258999999999999999998876544433

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.44  E-value=3.4e-12  Score=92.78  Aligned_cols=107  Identities=18%  Similarity=0.266  Sum_probs=72.8

Q ss_pred             EEEEEEeCCCc----------hhhhhhhHHhhccC---CEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCeEEEEEe
Q 043745           19 IKAQIWDTAGQ----------ERYRAITSAYYRGA---LGALLVYDVTKPTTFEN--VSRWLKELRDHADSNIVIMMIGN   83 (174)
Q Consensus        19 ~~l~l~D~~G~----------~~~~~~~~~~~~~~---d~ii~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piilv~n   83 (174)
                      ..+.||||+|.          +.+..+...+++.+   +++++++|.+++.+...  +..|+   ..   .+.|+++++|
T Consensus        70 ~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l---~~---~~~~~iiv~n  143 (196)
T PRK00454         70 DKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWL---KE---YGIPVLIVLT  143 (196)
T ss_pred             CeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHH---HH---cCCcEEEEEE
Confidence            56899999994          45556666676654   67888899877543332  22332   22   2688999999


Q ss_pred             CCCCCCccCC--CHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           84 KTDLKHLRAV--ATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        84 K~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      |.|+....+.  ..+++.........+++++||+++.|++++++.+...+
T Consensus       144 K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~  193 (196)
T PRK00454        144 KADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWL  193 (196)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence            9998653221  12223344444467899999999999999999887654

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.44  E-value=1.1e-12  Score=105.69  Aligned_cols=112  Identities=22%  Similarity=0.224  Sum_probs=78.4

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC--CH
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV--AT   95 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~   95 (174)
                      ...+.|||+||+++|...+...+..+|++++|+|+++........+.+..+....  -.|+++++||+|+.+....  ..
T Consensus        79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK~Dl~~~~~~~~~~  156 (406)
T TIGR03680        79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNKIDLVSKEKALENY  156 (406)
T ss_pred             ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEccccCCHHHHHHHH
Confidence            4678999999999998888888889999999999986421112222233332221  2478999999999753211  12


Q ss_pred             HHHHHHHHHh---CCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           96 EDAQSYAERE---GLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        96 ~~~~~~~~~~---~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      +++..+....   +++++++||+++.|+++++++|...+
T Consensus       157 ~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l  195 (406)
T TIGR03680       157 EEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI  195 (406)
T ss_pred             HHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence            3344444433   57899999999999999999887654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK10218 GTP-binding protein; Provisional

Probab=99.42  E-value=3.7e-12  Score=106.81  Aligned_cols=119  Identities=16%  Similarity=0.143  Sum_probs=83.6

Q ss_pred             eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      +...+..+.+.++||||||+.+|...+..+++.+|++|+|+|+.+..... ...++..+...   ++|+++++||+|+..
T Consensus        59 ~~~~i~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~~---gip~IVviNKiD~~~  134 (607)
T PRK10218         59 KNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFAY---GLKPIVVINKVDRPG  134 (607)
T ss_pred             EEEEEecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHHc---CCCEEEEEECcCCCC
Confidence            34556667789999999999999999999999999999999998753332 23333443332   688999999999975


Q ss_pred             ccC-CCHHHHHHHHH-------HhCCcEEEEeccCCC----------CHHHHHHHHHHHHH
Q 043745           90 LRA-VATEDAQSYAE-------REGLSFIETSALEAI----------NVEKAFQTILSEIY  132 (174)
Q Consensus        90 ~~~-~~~~~~~~~~~-------~~~~~~~~~Sa~~~~----------~i~~v~~~l~~~i~  132 (174)
                      .+. ...+++..+..       ...++++.+||++|.          ++..+++.+++.+.
T Consensus       135 a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP  195 (607)
T PRK10218        135 ARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP  195 (607)
T ss_pred             CchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence            321 11233333332       234679999999998          46677766655543

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=2.1e-12  Score=104.37  Aligned_cols=116  Identities=21%  Similarity=0.269  Sum_probs=87.0

Q ss_pred             CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC-C
Q 043745           15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA-V   93 (174)
Q Consensus        15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-~   93 (174)
                      +|+.+.++++|||||.+|......-+.-+||+|+|+|+.....-+.+..++..+.    .+.-+|.|.||+|++..+. .
T Consensus       121 ~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~  196 (650)
T KOG0462|consen  121 DGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPER  196 (650)
T ss_pred             cCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHH
Confidence            5677999999999999999988888899999999999998655554444444332    2678999999999987432 1


Q ss_pred             CHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           94 ATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      ...+.+++......+.+.+||++|.|++++++++++.+...
T Consensus       197 V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP  237 (650)
T KOG0462|consen  197 VENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPP  237 (650)
T ss_pred             HHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCCC
Confidence            12223333333345799999999999999999998876543

>cd00066 G-alpha G protein alpha subunit

Probab=99.40  E-value=4.9e-12  Score=98.86  Aligned_cols=132  Identities=15%  Similarity=0.170  Sum_probs=93.6

Q ss_pred             CCCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCCh----------hhHHHHHHHHHHHHhhc
Q 043745            3 QPRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP----------TTFENVSRWLKELRDHA   72 (174)
Q Consensus         3 ~pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~i~~~~   72 (174)
                      .||+|... ..+..+.+.+.+||++|+...+..|..++.+++++|||+|+++.          ..+.+....+..+....
T Consensus       146 ~~T~Gi~~-~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~  224 (317)
T cd00066         146 VKTTGIVE-TKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSR  224 (317)
T ss_pred             cccCCeeE-EEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCc
Confidence            58888442 23444468899999999999999999999999999999999874          23333334444444332


Q ss_pred             C-CCCeEEEEEeCCCCCCc---------------c-CCCHHHHHHHHHH----------hCCcEEEEeccCCCCHHHHHH
Q 043745           73 D-SNIVIMMIGNKTDLKHL---------------R-AVATEDAQSYAER----------EGLSFIETSALEAINVEKAFQ  125 (174)
Q Consensus        73 ~-~~~piilv~nK~Dl~~~---------------~-~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~v~~  125 (174)
                      . .+.|++|++||.|+..+               . ..+.+.+..+...          ..+-++.++|.+..++..+|+
T Consensus       225 ~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~  304 (317)
T cd00066         225 WFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFD  304 (317)
T ss_pred             cccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHH
Confidence            2 57999999999996221               1 2234444444322          124467789999999999999


Q ss_pred             HHHHHHHHHH
Q 043745          126 TILSEIYRII  135 (174)
Q Consensus       126 ~l~~~i~~~~  135 (174)
                      .+.+.|+...
T Consensus       305 ~v~~~i~~~~  314 (317)
T cd00066         305 AVKDIILQNN  314 (317)
T ss_pred             HHHHHHHHHH
Confidence            9999888754

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.37  E-value=6.1e-12  Score=101.55  Aligned_cols=107  Identities=24%  Similarity=0.274  Sum_probs=74.2

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC-
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP----TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV-   93 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~-   93 (174)
                      ..+.||||||+++|..........+|++++|+|+++.    ++.+.+    ..+....  -.|+++++||+|+.+.... 
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l----~~l~~~~--i~~iiVVlNK~Dl~~~~~~~  158 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL----MALDIIG--IKNIVIVQNKIDLVSKERAL  158 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH----HHHHHcC--CCcEEEEEEeeccccchhHH
Confidence            5789999999998876655555678999999999964    233322    2222221  2468999999999653221 


Q ss_pred             -CHHHHHHHHHHh---CCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           94 -ATEDAQSYAERE---GLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        94 -~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                       ..++.+.++...   +++++++||+++.|++++++.|...+
T Consensus       159 ~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l  200 (411)
T PRK04000        159 ENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI  200 (411)
T ss_pred             HHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence             123344444332   47899999999999999999887654

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.37  E-value=4e-12  Score=103.15  Aligned_cols=111  Identities=20%  Similarity=0.135  Sum_probs=74.4

Q ss_pred             EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHH-HHHHHHHHHhhcCCCCeEEEEEeCCCCCCcc
Q 043745           13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFEN-VSRWLKELRDHADSNIVIMMIGNKTDLKHLR   91 (174)
Q Consensus        13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~   91 (174)
                      .+..+...+.||||||+++|.......+..+|++++|+|+++...+.. ...++..+... . ..|+++++||+|+.+..
T Consensus        78 ~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~-~~~iivviNK~Dl~~~~  155 (425)
T PRK12317         78 KFETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-G-INQLIVAINKMDAVNYD  155 (425)
T ss_pred             EEecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-C-CCeEEEEEEcccccccc
Confidence            345556789999999999887665566789999999999987312211 12222323222 1 24699999999996421


Q ss_pred             C----CCHHHHHHHHHHhC-----CcEEEEeccCCCCHHHHHH
Q 043745           92 A----VATEDAQSYAEREG-----LSFIETSALEAINVEKAFQ  125 (174)
Q Consensus        92 ~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~v~~  125 (174)
                      .    ...+++..++...+     ++++++||++|.|+++...
T Consensus       156 ~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~  198 (425)
T PRK12317        156 EKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE  198 (425)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence            1    11244555665555     4699999999999987543

>smart00275 G_alpha G protein alpha subunit

Probab=99.37  E-value=3.1e-11  Score=95.22  Aligned_cols=132  Identities=16%  Similarity=0.194  Sum_probs=93.2

Q ss_pred             CCCCccce-eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChh----------hHHHHHHHHHHHHh
Q 043745            2 GQPRLGKL-CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPT----------TFENVSRWLKELRD   70 (174)
Q Consensus         2 g~pt~g~~-~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~----------s~~~~~~~~~~i~~   70 (174)
                      ..||+|.. ..+.+++  +.+.+||++|+...+..|..++.+++++|||+|+++.+          .+.+....+..+..
T Consensus       168 r~~T~Gi~~~~f~~~~--~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~  245 (342)
T smart00275      168 RVPTTGIQETAFIVKK--LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICN  245 (342)
T ss_pred             eCCccceEEEEEEECC--eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHc
Confidence            35888844 3344554  77899999999999999999999999999999999732          34444444555444


Q ss_pred             hcC-CCCeEEEEEeCCCCCCc---------------cCCCHHHHHHHHHH-----------hCCcEEEEeccCCCCHHHH
Q 043745           71 HAD-SNIVIMMIGNKTDLKHL---------------RAVATEDAQSYAER-----------EGLSFIETSALEAINVEKA  123 (174)
Q Consensus        71 ~~~-~~~piilv~nK~Dl~~~---------------~~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~i~~v  123 (174)
                      ... .+.|++|++||.|+...               ...+.+.+..+...           ..+.++.++|.+..++..+
T Consensus       246 ~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v  325 (342)
T smart00275      246 SRWFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVV  325 (342)
T ss_pred             CccccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHH
Confidence            322 57999999999997221               11223333333221           1244677889999999999


Q ss_pred             HHHHHHHHHHHH
Q 043745          124 FQTILSEIYRII  135 (174)
Q Consensus       124 ~~~l~~~i~~~~  135 (174)
                      |+.+...|++..
T Consensus       326 ~~~v~~~I~~~~  337 (342)
T smart00275      326 FDAVKDIILQRN  337 (342)
T ss_pred             HHHHHHHHHHHH
Confidence            999999888764

Subunit of G proteins that contains the guanine nucleotide binding site

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.36  E-value=5.9e-12  Score=100.50  Aligned_cols=116  Identities=23%  Similarity=0.282  Sum_probs=90.5

Q ss_pred             CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCC
Q 043745           15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVA   94 (174)
Q Consensus        15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~   94 (174)
                      +|+.+.++|+|||||-+|......-+..|.|.++|+|++..-.-+.+...+..+.+    +.-+|-|.||+||+...  .
T Consensus        72 ~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Ad--p  145 (603)
T COG0481          72 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAAD--P  145 (603)
T ss_pred             CCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCC--H
Confidence            67889999999999999988777788899999999999986545555554444433    67899999999998632  2


Q ss_pred             HHHHHHHHHHhCC---cEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q 043745           95 TEDAQSYAEREGL---SFIETSALEAINVEKAFQTILSEIYRIIS  136 (174)
Q Consensus        95 ~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~  136 (174)
                      +...+++..-.|+   ..+.+||++|.|++++++++++.+....+
T Consensus       146 ervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g  190 (603)
T COG0481         146 ERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKG  190 (603)
T ss_pred             HHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCC
Confidence            3444555666676   47889999999999999999888765443

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.35  E-value=2.3e-11  Score=91.18  Aligned_cols=107  Identities=26%  Similarity=0.237  Sum_probs=72.8

Q ss_pred             EEEEEEEeCCCchhhh-------hhhHHhhccCCEEEEEEeCCChh-hHHHHHHHHHHH---------------------
Q 043745           18 TIKAQIWDTAGQERYR-------AITSAYYRGALGALLVYDVTKPT-TFENVSRWLKEL---------------------   68 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~-------~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i---------------------   68 (174)
                      ...+++||+||+.+..       .....+++++|++++|+|+++.+ ..+.+...+...                     
T Consensus        46 ~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi  125 (233)
T cd01896          46 GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGI  125 (233)
T ss_pred             CeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCE
Confidence            3678999999975332       23345789999999999998764 333333322210                     


Q ss_pred             --------------------Hhh----------------------cC--CCCeEEEEEeCCCCCCccCCCHHHHHHHHHH
Q 043745           69 --------------------RDH----------------------AD--SNIVIMMIGNKTDLKHLRAVATEDAQSYAER  104 (174)
Q Consensus        69 --------------------~~~----------------------~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  104 (174)
                                          ..+                      .+  ..+|+++|+||+|+..     .++...++..
T Consensus       126 ~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~  200 (233)
T cd01896         126 NITSTVPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ  200 (233)
T ss_pred             EEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC
Confidence                                000                      00  2369999999999854     3455555543


Q ss_pred             hCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745          105 EGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus       105 ~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                        ..++++||+++.|++++|+.+.+.+
T Consensus       201 --~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         201 --PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             --CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence              4689999999999999999888753

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.34  E-value=1.5e-11  Score=98.28  Aligned_cols=123  Identities=20%  Similarity=0.177  Sum_probs=84.3

Q ss_pred             CCCCCcccee------------------------EEEECCeEEEEEEEeCCCchhhhhh--------hHHhhccCCEEEE
Q 043745            1 MGQPRLGKLC------------------------DFQVEGRTIKAQIWDTAGQERYRAI--------TSAYYRGALGALL   48 (174)
Q Consensus         1 ~g~pt~g~~~------------------------~~~~~~~~~~l~l~D~~G~~~~~~~--------~~~~~~~~d~ii~   48 (174)
                      +|+||+|||.                        +-.++-+++.+.+.||+|..+....        ....++.||.+++
T Consensus       223 iG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~  302 (454)
T COG0486         223 IGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLF  302 (454)
T ss_pred             ECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEE
Confidence            5999999776                        2233333488999999997643222        3455789999999


Q ss_pred             EEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043745           49 VYDVTKPT-TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI  127 (174)
Q Consensus        49 v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l  127 (174)
                      |+|.+... ..+....+      ....+.|+++|.||.||......     ..+....+.+++.+|+++++|++.+.+.+
T Consensus       303 v~D~~~~~~~~d~~~~~------~~~~~~~~i~v~NK~DL~~~~~~-----~~~~~~~~~~~i~iSa~t~~Gl~~L~~~i  371 (454)
T COG0486         303 VLDASQPLDKEDLALIE------LLPKKKPIIVVLNKADLVSKIEL-----ESEKLANGDAIISISAKTGEGLDALREAI  371 (454)
T ss_pred             EEeCCCCCchhhHHHHH------hcccCCCEEEEEechhccccccc-----chhhccCCCceEEEEecCccCHHHHHHHH
Confidence            99999852 22211111      22347899999999999764321     11112224579999999999999999988


Q ss_pred             HHHHHHH
Q 043745          128 LSEIYRI  134 (174)
Q Consensus       128 ~~~i~~~  134 (174)
                      .+.+...
T Consensus       372 ~~~~~~~  378 (454)
T COG0486         372 KQLFGKG  378 (454)
T ss_pred             HHHHhhc
Confidence            8777665

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.34  E-value=6.5e-12  Score=93.33  Aligned_cols=107  Identities=21%  Similarity=0.202  Sum_probs=70.0

Q ss_pred             EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhh---HH---HHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 043745           13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTT---FE---NVSRWLKELRDHADSNIVIMMIGNKTD   86 (174)
Q Consensus        13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~piilv~nK~D   86 (174)
                      .+......+.||||+|+.+|...+...+..+|++++|+|+++...   |.   .....+...... . ..|+++++||+|
T Consensus        71 ~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~iiivvNK~D  148 (219)
T cd01883          71 KFETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL-G-VKQLIVAVNKMD  148 (219)
T ss_pred             EEeeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc-C-CCeEEEEEEccc
Confidence            344455789999999999888777777889999999999988421   11   122222222222 1 368999999999


Q ss_pred             CCCc---cC---CCHHHHHHHHHHhC-----CcEEEEeccCCCCHH
Q 043745           87 LKHL---RA---VATEDAQSYAEREG-----LSFIETSALEAINVE  121 (174)
Q Consensus        87 l~~~---~~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~  121 (174)
                      +...   +.   ...++++.+....+     ++++++||++|.|++
T Consensus       149 l~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         149 DVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             cccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            9732   11   01122333344443     569999999999986

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.34  E-value=1e-11  Score=89.34  Aligned_cols=98  Identities=17%  Similarity=0.290  Sum_probs=65.1

Q ss_pred             EEEEEeCCCc----------hhhhhhhHHhhcc---CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 043745           20 KAQIWDTAGQ----------ERYRAITSAYYRG---ALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTD   86 (174)
Q Consensus        20 ~l~l~D~~G~----------~~~~~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D   86 (174)
                      .+.||||||.          +.|..+...+++.   ++++++|+|++++-+.... .++..+..   .++|+++++||+|
T Consensus        65 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D  140 (179)
T TIGR03598        65 GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKAD  140 (179)
T ss_pred             cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcc
Confidence            4789999994          3455555566654   5799999999876444443 22333332   2689999999999


Q ss_pred             CCCccC--CCHHHHHHHHHHhC--CcEEEEeccCCCCHH
Q 043745           87 LKHLRA--VATEDAQSYAEREG--LSFIETSALEAINVE  121 (174)
Q Consensus        87 l~~~~~--~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~  121 (174)
                      +....+  ...+++++.....+  ..++++||++++|++
T Consensus       141 ~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       141 KLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             cCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence            964321  12334444444443  479999999999873

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.33  E-value=1.6e-11  Score=103.33  Aligned_cols=106  Identities=19%  Similarity=0.130  Sum_probs=76.3

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCCCccCC-
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP---TTFENVSRWLKELRDHADSNIV-IMMIGNKTDLKHLRAV-   93 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~-   93 (174)
                      ..+.||||||+++|.......+.++|++++|+|+++.   ++.+.    +..+...   ++| +++|+||+|+.+...+ 
T Consensus        51 ~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~eh----l~il~~l---gi~~iIVVlNKiDlv~~~~~~  123 (614)
T PRK10512         51 RVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREH----LAILQLT---GNPMLTVALTKADRVDEARIA  123 (614)
T ss_pred             cEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHH----HHHHHHc---CCCeEEEEEECCccCCHHHHH
Confidence            3479999999999988777788999999999999873   33332    2222222   345 6799999999653221 


Q ss_pred             -CHHHHHHHHHHhC---CcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           94 -ATEDAQSYAEREG---LSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        94 -~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                       ..++.+++....+   .+++++||++|.|++++++.+....
T Consensus       124 ~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~  165 (614)
T PRK10512        124 EVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLP  165 (614)
T ss_pred             HHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhh
Confidence             1234455555544   6899999999999999999887643

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.33  E-value=4.2e-11  Score=90.00  Aligned_cols=73  Identities=22%  Similarity=0.193  Sum_probs=57.6

Q ss_pred             EEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745           12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus        12 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      ..+..+...++||||||+.+|...+..+++.+|++++|+|+++.... ....|+..+...   ++|+++++||+|+.
T Consensus        57 ~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~  129 (237)
T cd04168          57 ASFQWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRA  129 (237)
T ss_pred             EEEEECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECcccc
Confidence            34445567899999999999999899999999999999999986443 334555555443   68999999999984

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.32  E-value=1.9e-11  Score=90.18  Aligned_cols=103  Identities=27%  Similarity=0.206  Sum_probs=69.2

Q ss_pred             eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC----
Q 043745           17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA----   92 (174)
Q Consensus        17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----   92 (174)
                      ....+.||||||+++|...+...+..+|++++|+|+++...-. ...+...+... . ..++|+|+||+|+.....    
T Consensus        75 ~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~~~~~~~-~-~~~iIvviNK~D~~~~~~~~~~  151 (208)
T cd04166          75 PKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHSYILSLL-G-IRHVVVAVNKMDLVDYSEEVFE  151 (208)
T ss_pred             CCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHHHHHHHc-C-CCcEEEEEEchhcccCCHHHHH
Confidence            3457889999999998776777789999999999998753211 11222222222 1 245788999999864211    


Q ss_pred             CCHHHHHHHHHHhCC---cEEEEeccCCCCHHH
Q 043745           93 VATEDAQSYAEREGL---SFIETSALEAINVEK  122 (174)
Q Consensus        93 ~~~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~  122 (174)
                      ....+.++++..++.   +++++||+++.|+.+
T Consensus       152 ~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~  184 (208)
T cd04166         152 EIVADYLAFAAKLGIEDITFIPISALDGDNVVS  184 (208)
T ss_pred             HHHHHHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence            112344555666663   589999999999875

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.32  E-value=6.8e-11  Score=94.32  Aligned_cols=110  Identities=25%  Similarity=0.184  Sum_probs=75.4

Q ss_pred             EEEEEeCCCchhhhh-----------hhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745           20 KAQIWDTAGQERYRA-----------ITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus        20 ~l~l~D~~G~~~~~~-----------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      .+.|+||+|..+-..           -....+..+|++++|.|++.+-+-++. +....+.+.   +.+++++.||+|+.
T Consensus       227 ~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~~---g~~~vIvvNKWDl~  302 (444)
T COG1160         227 KYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDL-RIAGLIEEA---GRGIVIVVNKWDLV  302 (444)
T ss_pred             EEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHHc---CCCeEEEEEccccC
Confidence            468999999543211           134557789999999999986544433 233334333   67999999999987


Q ss_pred             CccCCCHHHHHHHHHH-h---C-CcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           89 HLRAVATEDAQSYAER-E---G-LSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        89 ~~~~~~~~~~~~~~~~-~---~-~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      +......++.++..+. +   + .+++++||+++.+++++|+.+....-.
T Consensus       303 ~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~  352 (444)
T COG1160         303 EEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYEC  352 (444)
T ss_pred             CchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHH
Confidence            6433444444333332 2   2 589999999999999999988776544

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.31  E-value=4.2e-11  Score=100.41  Aligned_cols=105  Identities=17%  Similarity=0.154  Sum_probs=74.4

Q ss_pred             EEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC--C-
Q 043745           21 AQIWDTAGQERYRAITSAYYRGALGALLVYDVTK---PTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV--A-   94 (174)
Q Consensus        21 l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~-   94 (174)
                      +.||||||++.|..++...+..+|++++|+|+++   ++++..+..    +..   .++|+++++||+|+......  . 
T Consensus        73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~~~~~~~~~~  145 (586)
T PRK04004         73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRIPGWKSTEDA  145 (586)
T ss_pred             EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCchhhhhhcCc
Confidence            6899999999999999989999999999999997   555554432    222   26899999999998521100  0 


Q ss_pred             -------------HH-------HHHHHHHHh---------------CCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           95 -------------TE-------DAQSYAERE---------------GLSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        95 -------------~~-------~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                                   .+       +........               .++++++||++|+|++++++.+....-
T Consensus       146 ~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~  218 (586)
T PRK04004        146 PFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQ  218 (586)
T ss_pred             hHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHH
Confidence                         00       000111111               257899999999999999988765443

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.30  E-value=1.3e-11  Score=85.86  Aligned_cols=124  Identities=15%  Similarity=0.273  Sum_probs=95.9

Q ss_pred             CCCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEE
Q 043745            3 QPRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMM   80 (174)
Q Consensus         3 ~pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piil   80 (174)
                      +||.. .+.++.+.+  ++++.+|.+|+-.-+..|..|+..+|+++|.+|+.|.+.|.+.+..+..+..... ..+|+++
T Consensus        49 vPTlHPTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~li  126 (193)
T KOG0077|consen   49 VPTLHPTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLI  126 (193)
T ss_pred             CCCcCCChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCccee
Confidence            47777 555667766  7889999999999999999999999999999999999999988776666544432 5799999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHH---Hh---C-----------CcEEEEeccCCCCHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAE---RE---G-----------LSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~---~~---~-----------~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      .+||+|.+..  .++++.+....   ..   +           ++++.||...+.+..+.|.|+...
T Consensus       127 lgnKId~p~a--~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  127 LGNKIDIPYA--ASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             ecccccCCCc--ccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence            9999999863  45555433321   11   1           357889999888888888877653

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.29  E-value=4.5e-11  Score=88.90  Aligned_cols=69  Identities=20%  Similarity=0.264  Sum_probs=55.1

Q ss_pred             CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745           16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus        16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      ++.+.++||||||+++|......+++.+|++++|||+++......... +.....   .++|+++++||+|+.
T Consensus        70 ~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~-l~~~~~---~~~p~ilviNKiD~~  138 (222)
T cd01885          70 GNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETV-LRQALK---ERVKPVLVINKIDRL  138 (222)
T ss_pred             CCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHH-HHHHHH---cCCCEEEEEECCCcc
Confidence            447889999999999999999999999999999999998765544222 222222   257999999999985

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.27  E-value=7.7e-11  Score=89.99  Aligned_cols=107  Identities=17%  Similarity=0.201  Sum_probs=80.3

Q ss_pred             EEEEEeCCCchhh----hhh---hHHhhccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhcC--CCCeEEEEEeCCCC
Q 043745           20 KAQIWDTAGQERY----RAI---TSAYYRGALGALLVYDVTKP---TTFENVSRWLKELRDHAD--SNIVIMMIGNKTDL   87 (174)
Q Consensus        20 ~l~l~D~~G~~~~----~~~---~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl   87 (174)
                      .+.+-|.||.-+-    +.+   .-..+++++.++||+|++..   +.++.+..++.++..+..  .+.|.++|+||+|+
T Consensus       245 q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~  324 (366)
T KOG1489|consen  245 QITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDL  324 (366)
T ss_pred             eeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCc
Confidence            3899999995322    122   23446789999999999988   778887776677666554  57899999999999


Q ss_pred             CCccCCCHHHHHHHHHHhCCc-EEEEeccCCCCHHHHHHHHHH
Q 043745           88 KHLRAVATEDAQSYAEREGLS-FIETSALEAINVEKAFQTILS  129 (174)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~v~~~l~~  129 (174)
                      ++..   ...+.++++.+.-+ ++++||++++|++++++.|.+
T Consensus       325 ~eae---~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  325 PEAE---KNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLRE  364 (366)
T ss_pred             hhHH---HHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhh
Confidence            6421   22347777777654 999999999999999887754

>cd04167 Snu114p Snu114p subfamily

Probab=99.25  E-value=7.2e-11  Score=87.32  Aligned_cols=70  Identities=26%  Similarity=0.307  Sum_probs=56.1

Q ss_pred             CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745           15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus        15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      ++..+.++||||||+.+|......++..+|++++|+|+++..++.. ..|+.....   .++|+++++||+|+.
T Consensus        67 ~~~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~  136 (213)
T cd04167          67 KGKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL  136 (213)
T ss_pred             CCCEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence            3567889999999999998888899999999999999988765533 344444432   258999999999974

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.24  E-value=2.4e-10  Score=100.41  Aligned_cols=106  Identities=19%  Similarity=0.191  Sum_probs=74.4

Q ss_pred             EEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCC---
Q 043745           21 AQIWDTAGQERYRAITSAYYRGALGALLVYDVTK---PTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVA---   94 (174)
Q Consensus        21 l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~---   94 (174)
                      +.||||||++.|..+....+..+|++++|+|+++   +++++.+.    .+..   .++|+++++||+|+.......   
T Consensus       528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~  600 (1049)
T PRK14845        528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDE  600 (1049)
T ss_pred             EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccch
Confidence            7999999999999888888899999999999987   44444432    2222   258999999999995321110   


Q ss_pred             ----------HHHHHHH----------HHH-------------h--CCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           95 ----------TEDAQSY----------AER-------------E--GLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        95 ----------~~~~~~~----------~~~-------------~--~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                                .....++          ..+             +  .++++++||++|+|+++++..+......
T Consensus       601 ~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~  674 (1049)
T PRK14845        601 PFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQK  674 (1049)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHH
Confidence                      0001111          111             1  2578999999999999999877655443

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.24  E-value=1.6e-10  Score=81.19  Aligned_cols=105  Identities=18%  Similarity=0.240  Sum_probs=69.5

Q ss_pred             EEEEEeCCCch----------hhhhhhHHhhcc---CCEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 043745           20 KAQIWDTAGQE----------RYRAITSAYYRG---ALGALLVYDVTKPT--TFENVSRWLKELRDHADSNIVIMMIGNK   84 (174)
Q Consensus        20 ~l~l~D~~G~~----------~~~~~~~~~~~~---~d~ii~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piilv~nK   84 (174)
                      .+.+|||+|..          .+......++..   .+++++++|.++..  ....+..|+...      ..|+++++||
T Consensus        46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~------~~~vi~v~nK  119 (170)
T cd01876          46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL------GIPFLVVLTK  119 (170)
T ss_pred             eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc------CCCEEEEEEc
Confidence            68899999943          345555666653   57889999988653  223334454432      4799999999


Q ss_pred             CCCCCccCC--CHHHHHHHHH--HhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745           85 TDLKHLRAV--ATEDAQSYAE--REGLSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        85 ~Dl~~~~~~--~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      +|+......  .........+  ....+++++||+++.++.++++++.+.
T Consensus       120 ~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         120 ADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             hhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence            998532211  1122222222  233679999999999999999998765

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.22  E-value=3e-10  Score=84.72  Aligned_cols=107  Identities=17%  Similarity=0.103  Sum_probs=70.7

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC--
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYR--GALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV--   93 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--   93 (174)
                      ...+.|.|+||+++|.......+.  .+|++++|+|+.....- ....++..+...   ++|+++++||+|+.+....  
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~-~d~~~l~~l~~~---~ip~ivvvNK~D~~~~~~~~~  158 (224)
T cd04165          83 SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIG-MTKEHLGLALAL---NIPVFVVVTKIDLAPANILQE  158 (224)
T ss_pred             CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEECccccCHHHHHH
Confidence            356899999999998765544453  68999999998865332 223344444333   5899999999998543221  


Q ss_pred             CHHHHHHHHHH------------------------h--CCcEEEEeccCCCCHHHHHHHHH
Q 043745           94 ATEDAQSYAER------------------------E--GLSFIETSALEAINVEKAFQTIL  128 (174)
Q Consensus        94 ~~~~~~~~~~~------------------------~--~~~~~~~Sa~~~~~i~~v~~~l~  128 (174)
                      ...++..+...                        .  ..+++.+||.+|+|++++...|.
T Consensus       159 ~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         159 TLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             HHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence            11222222221                        0  14899999999999999887553

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.20  E-value=6.6e-10  Score=81.17  Aligned_cols=104  Identities=19%  Similarity=0.172  Sum_probs=71.1

Q ss_pred             EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCCCcc
Q 043745           13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIV-IMMIGNKTDLKHLR   91 (174)
Q Consensus        13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~   91 (174)
                      .+..+..++.|+||||+.+|.......+..+|++++|+|+...-.-. ..+.+..+...   ++| +|+++||+|+....
T Consensus        59 ~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~~---~~~~iIvviNK~D~~~~~  134 (195)
T cd01884          59 EYETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQV---GVPYIVVFLNKADMVDDE  134 (195)
T ss_pred             EecCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCcEEEEEeCCCCCCcH
Confidence            34444567899999999998887777888999999999998642222 22333444333   466 77889999985322


Q ss_pred             CC---CHHHHHHHHHHhC-----CcEEEEeccCCCCH
Q 043745           92 AV---ATEDAQSYAEREG-----LSFIETSALEAINV  120 (174)
Q Consensus        92 ~~---~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i  120 (174)
                      +.   ..++++.+....+     ++++++||++|.|+
T Consensus       135 ~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         135 ELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             HHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence            21   1234555555544     57999999999885

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.20  E-value=5.6e-10  Score=90.54  Aligned_cols=106  Identities=19%  Similarity=0.209  Sum_probs=79.0

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCH
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP---TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVAT   95 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~   95 (174)
                      -.+.|.|||||+-|..++..=..=+|++|+|++++|.   ++.+.+    ...+.   .++|+++++||+|.++.   ..
T Consensus        55 ~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI----~hak~---a~vP~iVAiNKiDk~~~---np  124 (509)
T COG0532          55 PGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAI----NHAKA---AGVPIVVAINKIDKPEA---NP  124 (509)
T ss_pred             ceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHH----HHHHH---CCCCEEEEEecccCCCC---CH
Confidence            3579999999999999999888899999999999983   444443    22233   37999999999999853   22


Q ss_pred             HHHHHHHHHhC---------CcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           96 EDAQSYAEREG---------LSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        96 ~~~~~~~~~~~---------~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      .....-..++|         ..++++||++|+|+.+++..++-..-.+
T Consensus       125 ~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~aev~  172 (509)
T COG0532         125 DKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLAEVL  172 (509)
T ss_pred             HHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHHHH
Confidence            22222222223         4689999999999999998777665544

>cd01855 YqeH YqeH

Probab=99.18  E-value=2.7e-10  Score=82.76  Aligned_cols=96  Identities=20%  Similarity=0.153  Sum_probs=67.8

Q ss_pred             hhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHH-----HH
Q 043745           30 ERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYA-----ER  104 (174)
Q Consensus        30 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~  104 (174)
                      +.+..++..+++++|++++|+|+.+...     .|...+.... .+.|+++|+||+|+... ....+....+.     ..
T Consensus        22 ~~~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~-~~~~~ilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~   94 (190)
T cd01855          22 DFILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFG-GNNPVILVGNKIDLLPK-DKNLVRIKNWLRAKAAAG   94 (190)
T ss_pred             HHHHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhc-CCCcEEEEEEchhcCCC-CCCHHHHHHHHHHHHHhh
Confidence            3457889999999999999999987531     1222222222 36899999999999653 33344444443     23


Q ss_pred             hCC---cEEEEeccCCCCHHHHHHHHHHHHH
Q 043745          105 EGL---SFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus       105 ~~~---~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      .+.   +++++||+++.|++++++.+.+.+.
T Consensus        95 ~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          95 LGLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             cCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            333   6899999999999999999988653

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK12736 elongation factor Tu; Reviewed

Probab=99.18  E-value=5.7e-10  Score=89.77  Aligned_cols=102  Identities=19%  Similarity=0.158  Sum_probs=68.5

Q ss_pred             EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCCCcc
Q 043745           13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIV-IMMIGNKTDLKHLR   91 (174)
Q Consensus        13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~   91 (174)
                      .+......+.||||||+++|......-+..+|++++|+|+++...-. ..+++..+...   ++| +|+++||+|+.+..
T Consensus        69 ~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~~---g~~~~IvviNK~D~~~~~  144 (394)
T PRK12736         69 EYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQV---GVPYLVVFLNKVDLVDDE  144 (394)
T ss_pred             EecCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCEEEEEEEecCCcchH
Confidence            34444567899999999998776666678899999999998642211 22333333332   567 67889999996432


Q ss_pred             CCC---HHHHHHHHHHhC-----CcEEEEeccCCC
Q 043745           92 AVA---TEDAQSYAEREG-----LSFIETSALEAI  118 (174)
Q Consensus        92 ~~~---~~~~~~~~~~~~-----~~~~~~Sa~~~~  118 (174)
                      +..   .+++..+....+     ++++++||+++.
T Consensus       145 ~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T PRK12736        145 ELLELVEMEVRELLSEYDFPGDDIPVIRGSALKAL  179 (394)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccc
Confidence            221   234555555555     479999999983

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.16  E-value=3.2e-10  Score=86.31  Aligned_cols=114  Identities=20%  Similarity=0.172  Sum_probs=71.5

Q ss_pred             CCeEEEEEEEeCCCch------hhh------hhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEE
Q 043745           15 EGRTIKAQIWDTAGQE------RYR------AITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIG   82 (174)
Q Consensus        15 ~~~~~~l~l~D~~G~~------~~~------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~   82 (174)
                      -....++.|+||||.-      ++.      ..-...+..||.++.|+|+++....-. ...+..+..+.  .+|-++|.
T Consensus       116 ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~lvm  192 (379)
T KOG1423|consen  116 TSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSILVM  192 (379)
T ss_pred             ecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCceeec
Confidence            3445689999999942      111      112345678999999999996322111 23344555553  58889999


Q ss_pred             eCCCCCCccC-------------CCHHHHHHHHHHh-------------CC----cEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           83 NKTDLKHLRA-------------VATEDAQSYAERE-------------GL----SFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        83 nK~Dl~~~~~-------------~~~~~~~~~~~~~-------------~~----~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      ||.|....+.             ++... .++..++             |+    .+|.+||++|+|++++-++++.++.
T Consensus       193 nkid~~k~k~~Ll~l~~~Lt~g~l~~~k-l~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~  271 (379)
T KOG1423|consen  193 NKIDKLKQKRLLLNLKDLLTNGELAKLK-LEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP  271 (379)
T ss_pred             cchhcchhhhHHhhhHHhccccccchhh-hhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence            9999754321             11101 1111111             12    2899999999999999999887654

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.16  E-value=6.7e-10  Score=76.56  Aligned_cols=99  Identities=21%  Similarity=0.226  Sum_probs=73.2

Q ss_pred             EEEeCCCc----hhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHH
Q 043745           22 QIWDTAGQ----ERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATED   97 (174)
Q Consensus        22 ~l~D~~G~----~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~   97 (174)
                      .++||||.    ..|....-....+||.++++.|++++.+.-.     +.+....  +.|+|-|+||+|+... ....+.
T Consensus        39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~p-----P~fa~~f--~~pvIGVITK~Dl~~~-~~~i~~  110 (143)
T PF10662_consen   39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFP-----PGFASMF--NKPVIGVITKIDLPSD-DANIER  110 (143)
T ss_pred             cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCC-----chhhccc--CCCEEEEEECccCccc-hhhHHH
Confidence            56999994    3455555556679999999999998643211     1222222  5799999999999842 334667


Q ss_pred             HHHHHHHhCC-cEEEEeccCCCCHHHHHHHHH
Q 043745           98 AQSYAEREGL-SFIETSALEAINVEKAFQTIL  128 (174)
Q Consensus        98 ~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~  128 (174)
                      .+++.+..|+ ++|++|+.+++|++++.+.|-
T Consensus       111 a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~  142 (143)
T PF10662_consen  111 AKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE  142 (143)
T ss_pred             HHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence            7888888886 589999999999999988763

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.15  E-value=8e-10  Score=88.95  Aligned_cols=103  Identities=17%  Similarity=0.135  Sum_probs=69.1

Q ss_pred             EEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeE-EEEEeCCCCCCc
Q 043745           12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVI-MMIGNKTDLKHL   90 (174)
Q Consensus        12 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~nK~Dl~~~   90 (174)
                      +.+......+.||||||+++|..........+|++++|+|+.+...... .+.+..+...   ++|. |+++||+|+.+.
T Consensus        68 ~~~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~~---gi~~iIvvvNK~Dl~~~  143 (394)
T TIGR00485        68 VEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQV---GVPYIVVFLNKCDMVDD  143 (394)
T ss_pred             EEEcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCEEEEEEEecccCCH
Confidence            3444555678999999999987766666678899999999987422221 2233333332   4665 468999998653


Q ss_pred             cCCC---HHHHHHHHHHhC-----CcEEEEeccCCC
Q 043745           91 RAVA---TEDAQSYAEREG-----LSFIETSALEAI  118 (174)
Q Consensus        91 ~~~~---~~~~~~~~~~~~-----~~~~~~Sa~~~~  118 (174)
                      .+..   .++++.++...+     ++++++||.++.
T Consensus       144 ~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       144 EELLELVEMEVRELLSEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence            2221   235666666665     689999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.15  E-value=3.7e-10  Score=92.06  Aligned_cols=106  Identities=19%  Similarity=0.218  Sum_probs=75.5

Q ss_pred             EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHH-------HHHHHHHHHHhhcCCCC-eEEEEEeC
Q 043745           13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFE-------NVSRWLKELRDHADSNI-VIMMIGNK   84 (174)
Q Consensus        13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~-------~~~~~~~~i~~~~~~~~-piilv~nK   84 (174)
                      .+......+.|+|+|||++|.......+..+|++|+|+|+++. .|+       ...+.+......   ++ ++|+++||
T Consensus        79 ~~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~~---gi~~iIV~vNK  154 (447)
T PLN00043         79 KFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFTL---GVKQMICCCNK  154 (447)
T ss_pred             EecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHHc---CCCcEEEEEEc
Confidence            3455567899999999999999888889999999999999872 232       333333332222   45 57889999


Q ss_pred             CCCCCcc------CCCHHHHHHHHHHhC-----CcEEEEeccCCCCHHH
Q 043745           85 TDLKHLR------AVATEDAQSYAEREG-----LSFIETSALEAINVEK  122 (174)
Q Consensus        85 ~Dl~~~~------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  122 (174)
                      +|+....      ....++++.++.+.|     ++++++||.+|+|+.+
T Consensus       155 mD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        155 MDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             ccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            9986210      011345666777666     5699999999999854

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.15  E-value=1.2e-09  Score=90.70  Aligned_cols=73  Identities=23%  Similarity=0.215  Sum_probs=55.4

Q ss_pred             EEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745           12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus        12 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      +.+..+.+.++||||||+.+|......++..+|++|+|+|+++.... ....++.....   .++|+++++||+|+.
T Consensus        72 ~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~  144 (526)
T PRK00741         72 MQFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRD  144 (526)
T ss_pred             EEEEECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCccc
Confidence            34555568899999999999988777889999999999999875322 23344443332   378999999999974

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.14  E-value=4.2e-10  Score=93.62  Aligned_cols=126  Identities=17%  Similarity=0.170  Sum_probs=87.6

Q ss_pred             CCCCCcccee-----------------------EEEECCeEEEEEEEeCCCchhh------hhhhHHhh--ccCCEEEEE
Q 043745            1 MGQPRLGKLC-----------------------DFQVEGRTIKAQIWDTAGQERY------RAITSAYY--RGALGALLV   49 (174)
Q Consensus         1 ~g~pt~g~~~-----------------------~~~~~~~~~~l~l~D~~G~~~~------~~~~~~~~--~~~d~ii~v   49 (174)
                      +|+||+||+.                       +-.+..++.++++.|.||.-..      ....+.|+  .+.|+++-|
T Consensus         9 vGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnV   88 (653)
T COG0370           9 VGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNV   88 (653)
T ss_pred             ecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEE
Confidence            5899999665                       2233333445899999995322      23344444  367999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHH
Q 043745           50 YDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILS  129 (174)
Q Consensus        50 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~  129 (174)
                      +|+++.+.--.   .--++.+   .+.|++++.|+.|..+.+.+ .-+.+++.+.+|+|+++++|++|.|++++..++.+
T Consensus        89 vDAtnLeRnLy---ltlQLlE---~g~p~ilaLNm~D~A~~~Gi-~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~  161 (653)
T COG0370          89 VDATNLERNLY---LTLQLLE---LGIPMILALNMIDEAKKRGI-RIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIE  161 (653)
T ss_pred             cccchHHHHHH---HHHHHHH---cCCCeEEEeccHhhHHhcCC-cccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHH
Confidence            99998542221   1222223   27899999999999775433 34566778899999999999999999999888876


Q ss_pred             HHHH
Q 043745          130 EIYR  133 (174)
Q Consensus       130 ~i~~  133 (174)
                      ....
T Consensus       162 ~~~~  165 (653)
T COG0370         162 LAES  165 (653)
T ss_pred             hccc
Confidence            4433

>cd04169 RF3 RF3 subfamily

Probab=99.14  E-value=1.4e-09  Score=83.18  Aligned_cols=91  Identities=23%  Similarity=0.212  Sum_probs=63.6

Q ss_pred             EEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCcc
Q 043745           12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLR   91 (174)
Q Consensus        12 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~   91 (174)
                      ..+..+.+.++||||||+.+|......+++.+|++|+|+|+++.... ....++.....   .++|+++++||+|+....
T Consensus        64 ~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~a~  139 (267)
T cd04169          64 MQFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREGRD  139 (267)
T ss_pred             EEEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCCCC
Confidence            35566678899999999999988777888999999999999875322 22334443332   368999999999986532


Q ss_pred             CCCHHHHHHHHHHhCCc
Q 043745           92 AVATEDAQSYAEREGLS  108 (174)
Q Consensus        92 ~~~~~~~~~~~~~~~~~  108 (174)
                        ......++...++.+
T Consensus       140 --~~~~~~~l~~~l~~~  154 (267)
T cd04169         140 --PLELLDEIEEELGID  154 (267)
T ss_pred             --HHHHHHHHHHHHCCC
Confidence              122344445555543

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.14  E-value=5.8e-10  Score=90.98  Aligned_cols=109  Identities=18%  Similarity=0.183  Sum_probs=74.2

Q ss_pred             EEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC--CHH
Q 043745           20 KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP-TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV--ATE   96 (174)
Q Consensus        20 ~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~   96 (174)
                      .+.|+|+||+++|......-+..+|++++|+|+.+. ..-+ ..+.+..+... . -.++|++.||+|+.+....  ..+
T Consensus       118 ~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~q-T~ehl~i~~~l-g-i~~iIVvlNKiDlv~~~~~~~~~~  194 (460)
T PTZ00327        118 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQ-TSEHLAAVEIM-K-LKHIIILQNKIDLVKEAQAQDQYE  194 (460)
T ss_pred             eEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchh-hHHHHHHHHHc-C-CCcEEEEEecccccCHHHHHHHHH
Confidence            689999999999987777777899999999999863 1111 12222222222 1 2468999999999642221  112


Q ss_pred             HHHHHHHH---hCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           97 DAQSYAER---EGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        97 ~~~~~~~~---~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      +.+++...   .+.+++++||++|.|++.+++.|.+.+
T Consensus       195 ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l  232 (460)
T PTZ00327        195 EIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI  232 (460)
T ss_pred             HHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence            33333332   257899999999999999888777543

>cd01859 MJ1464 MJ1464

Probab=99.11  E-value=4.3e-10  Score=79.10  Aligned_cols=95  Identities=19%  Similarity=0.195  Sum_probs=65.8

Q ss_pred             hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEE
Q 043745           32 YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIE  111 (174)
Q Consensus        32 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  111 (174)
                      |+.+++..++++|++++|+|+.++..... ..+...+..   .+.|+++|+||+|+.+...  ......+....+.+++.
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~   75 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVLE---LGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVY   75 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHHh---CCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEE
Confidence            56778888889999999999987543222 122222221   2589999999999854211  11222333445678999


Q ss_pred             EeccCCCCHHHHHHHHHHHHH
Q 043745          112 TSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus       112 ~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      +||+++.|++++++.+.+.+.
T Consensus        76 iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          76 VSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             EEccccccHHHHHHHHHHHHh
Confidence            999999999999998887664

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.10  E-value=2.2e-09  Score=83.95  Aligned_cols=134  Identities=19%  Similarity=0.250  Sum_probs=93.4

Q ss_pred             CCCCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChh-------hHHHHHHHHHHHHhhcC-
Q 043745            2 GQPRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPT-------TFENVSRWLKELRDHAD-   73 (174)
Q Consensus         2 g~pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-------s~~~~~~~~~~i~~~~~-   73 (174)
                      ..||.|.. ++.+.-+.+.+.++|++||...+.-|.+++.+++++|||+++++.+       ..+++.+-+..+..... 
T Consensus       179 R~~T~GI~-e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~  257 (354)
T KOG0082|consen  179 RVPTTGIV-EVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNN  257 (354)
T ss_pred             ccCcCCee-EEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcC
Confidence            46899944 2344444488999999999999999999999999999999998633       23344333333333222 


Q ss_pred             ---CCCeEEEEEeCCCCCCc--------------c-CCCHHHHHHHHHHh----------CCcEEEEeccCCCCHHHHHH
Q 043745           74 ---SNIVIMMIGNKTDLKHL--------------R-AVATEDAQSYAERE----------GLSFIETSALEAINVEKAFQ  125 (174)
Q Consensus        74 ---~~~piilv~nK~Dl~~~--------------~-~~~~~~~~~~~~~~----------~~~~~~~Sa~~~~~i~~v~~  125 (174)
                         .+.++||+.||.||-++              . .-..+++..+....          .+-++.++|.+..+++.+|.
T Consensus       258 ~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~  337 (354)
T KOG0082|consen  258 KWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFD  337 (354)
T ss_pred             cccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHH
Confidence               57999999999998321              1 12333443333211          24467789999999999999


Q ss_pred             HHHHHHHHHHh
Q 043745          126 TILSEIYRIIS  136 (174)
Q Consensus       126 ~l~~~i~~~~~  136 (174)
                      .+.+.+.....
T Consensus       338 av~d~Ii~~nl  348 (354)
T KOG0082|consen  338 AVTDTIIQNNL  348 (354)
T ss_pred             HHHHHHHHHHH
Confidence            99999887643

>PRK12735 elongation factor Tu; Reviewed

Probab=99.10  E-value=1.7e-09  Score=87.15  Aligned_cols=101  Identities=17%  Similarity=0.136  Sum_probs=67.6

Q ss_pred             ECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE-EEEeCCCCCCccC
Q 043745           14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM-MIGNKTDLKHLRA   92 (174)
Q Consensus        14 ~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~Dl~~~~~   92 (174)
                      +.....++.|+||||+++|.......+..+|++++|+|+.+...-. ..+++..+...   ++|.+ +++||+|+.+..+
T Consensus        70 ~~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~~---gi~~iivvvNK~Dl~~~~~  145 (396)
T PRK12735         70 YETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV---GVPYIVVFLNKCDMVDDEE  145 (396)
T ss_pred             EcCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCeEEEEEEecCCcchHH
Confidence            3344457899999999998777667778999999999998743222 22333333322   57755 5799999964222


Q ss_pred             C---CHHHHHHHHHHhC-----CcEEEEeccCCC
Q 043745           93 V---ATEDAQSYAEREG-----LSFIETSALEAI  118 (174)
Q Consensus        93 ~---~~~~~~~~~~~~~-----~~~~~~Sa~~~~  118 (174)
                      .   ...+++.++...+     ++++++||.++.
T Consensus       146 ~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~  179 (396)
T PRK12735        146 LLELVEMEVRELLSKYDFPGDDTPIIRGSALKAL  179 (396)
T ss_pred             HHHHHHHHHHHHHHHcCCCcCceeEEecchhccc
Confidence            1   1234555555543     678999999985

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.09  E-value=2e-10  Score=93.69  Aligned_cols=117  Identities=23%  Similarity=0.287  Sum_probs=90.4

Q ss_pred             eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcC--CCCeEEEEEeCCCCCCccCC
Q 043745           17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHAD--SNIVIMMIGNKTDLKHLRAV   93 (174)
Q Consensus        17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~   93 (174)
                      ..+...+.|++....-+.....-++.||++.+||+++++++++.+ ..|++.+++..+  .++|+|||+||.|+......
T Consensus        54 e~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~  133 (625)
T KOG1707|consen   54 ENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN  133 (625)
T ss_pred             CcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence            345689999987766666667788999999999999999999999 589999988774  47999999999999764433


Q ss_pred             CHHH-HHHHHHHhC-C-cEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           94 ATED-AQSYAEREG-L-SFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        94 ~~~~-~~~~~~~~~-~-~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      +.+. ...+..++. + ..++|||++..++.++|...-+.+..
T Consensus       134 s~e~~~~pim~~f~EiEtciecSA~~~~n~~e~fYyaqKaVih  176 (625)
T KOG1707|consen  134 SDEVNTLPIMIAFAEIETCIECSALTLANVSELFYYAQKAVIH  176 (625)
T ss_pred             chhHHHHHHHHHhHHHHHHHhhhhhhhhhhHhhhhhhhheeec
Confidence            2222 333333332 3 47899999999999999877666554

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.08  E-value=2.5e-09  Score=82.63  Aligned_cols=116  Identities=16%  Similarity=0.086  Sum_probs=80.4

Q ss_pred             EEEEEeCCCchhh----hhhhH---HhhccCCEEEEEEeCCChh---hHHHHHHHHHHHHhhcC--CCCeEEEEEeCCCC
Q 043745           20 KAQIWDTAGQERY----RAITS---AYYRGALGALLVYDVTKPT---TFENVSRWLKELRDHAD--SNIVIMMIGNKTDL   87 (174)
Q Consensus        20 ~l~l~D~~G~~~~----~~~~~---~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl   87 (174)
                      .+.+-|.||.-+-    ..+..   ..++++.++++|+|++..+   ..++...+..++..+..  .+.|.+||+||+|+
T Consensus       208 sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~  287 (369)
T COG0536         208 SFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDL  287 (369)
T ss_pred             cEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCC
Confidence            4788999985321    12223   3456789999999998654   36666666677766654  67899999999997


Q ss_pred             CCccCCCHHHHHHHHHHhCCcEE-EEeccCCCCHHHHHHHHHHHHHHHH
Q 043745           88 KHLRAVATEDAQSYAEREGLSFI-ETSALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~-~~Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                      ....+......+.+.+..++..+ .+||.+++|++++...+.+.+....
T Consensus       288 ~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         288 PLDEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEETK  336 (369)
T ss_pred             CcCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHhh
Confidence            54333223334444445554432 2999999999999999988887775

>PRK09866 hypothetical protein; Provisional

Probab=99.07  E-value=3.9e-09  Score=88.03  Aligned_cols=109  Identities=12%  Similarity=0.142  Sum_probs=73.7

Q ss_pred             EEEEEEeCCCchh-----hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC
Q 043745           19 IKAQIWDTAGQER-----YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV   93 (174)
Q Consensus        19 ~~l~l~D~~G~~~-----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~   93 (174)
                      .++.|+||||...     ........+..+|+|+||+|+.+..+..+ ...+..+.... ...|+++|+||+|+.+...-
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~-K~~PVILVVNKIDl~dreed  307 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG-QSVPLYVLVNKFDQQDRNSD  307 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC-CCCCEEEEEEcccCCCcccc
Confidence            4689999999753     23344557899999999999987433332 12334443332 23699999999998643222


Q ss_pred             CHHHHHHHHHH----hC---CcEEEEeccCCCCHHHHHHHHHH
Q 043745           94 ATEDAQSYAER----EG---LSFIETSALEAINVEKAFQTILS  129 (174)
Q Consensus        94 ~~~~~~~~~~~----~~---~~~~~~Sa~~~~~i~~v~~~l~~  129 (174)
                      ..+....+...    .+   ..++++||++|.|++.+++.+..
T Consensus       308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            24455555432    12   25999999999999999998776

>PRK12289 GTPase RsgA; Reviewed

Probab=99.07  E-value=8.2e-10  Score=87.28  Aligned_cols=92  Identities=20%  Similarity=0.227  Sum_probs=68.7

Q ss_pred             hhhHHhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEE
Q 043745           34 AITSAYYRGALGALLVYDVTKPT-TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIET  112 (174)
Q Consensus        34 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  112 (174)
                      .+.+..+.++|.+++|+|+.+++ +...+..|+..+..   .++|++||+||+||.+..+  .+...+....+|+.++.+
T Consensus        81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~i  155 (352)
T PRK12289         81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLFI  155 (352)
T ss_pred             ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEEE
Confidence            34556689999999999998765 55566788776533   3689999999999964211  122233345678899999


Q ss_pred             eccCCCCHHHHHHHHHHH
Q 043745          113 SALEAINVEKAFQTILSE  130 (174)
Q Consensus       113 Sa~~~~~i~~v~~~l~~~  130 (174)
                      ||+++.|++++++.+...
T Consensus       156 SA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        156 SVETGIGLEALLEQLRNK  173 (352)
T ss_pred             EcCCCCCHHHHhhhhccc
Confidence            999999999999988654

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.06  E-value=4.4e-09  Score=85.61  Aligned_cols=104  Identities=22%  Similarity=0.210  Sum_probs=78.4

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCH
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP---TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVAT   95 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~   95 (174)
                      -.+.|.|||||.-|..|+..-..-.|++++|+.++|.   ++.+.       |.+....++|+++.+||+|.++.   +.
T Consensus       201 ~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~Ea-------IkhAk~A~VpiVvAinKiDkp~a---~p  270 (683)
T KOG1145|consen  201 KSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEA-------IKHAKSANVPIVVAINKIDKPGA---NP  270 (683)
T ss_pred             CEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHH-------HHHHHhcCCCEEEEEeccCCCCC---CH
Confidence            5679999999999999999988899999999999884   44433       33333358999999999998753   23


Q ss_pred             HHH-HHHH------HHhC--CcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           96 EDA-QSYA------EREG--LSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        96 ~~~-~~~~------~~~~--~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      +.. +++.      +++|  ++++++||++|.|++.+.++++-++-
T Consensus       271 ekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae  316 (683)
T KOG1145|consen  271 EKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLAE  316 (683)
T ss_pred             HHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHHH
Confidence            333 3332      3343  57999999999999998887765543

>PRK00098 GTPase RsgA; Reviewed

Probab=99.06  E-value=2.3e-09  Score=83.20  Aligned_cols=86  Identities=19%  Similarity=0.201  Sum_probs=65.1

Q ss_pred             hccCCEEEEEEeCCChhhHHH-HHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCC
Q 043745           40 YRGALGALLVYDVTKPTTFEN-VSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAI  118 (174)
Q Consensus        40 ~~~~d~ii~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  118 (174)
                      ..++|.+++|+|+.+++.+.. +.+|+..+..   .++|+++|+||+||.+..+ ...+.......++++++++||+++.
T Consensus        78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g~  153 (298)
T PRK00098         78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEGE  153 (298)
T ss_pred             eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            489999999999988765444 4778776644   3689999999999963222 1223444556678899999999999


Q ss_pred             CHHHHHHHHHH
Q 043745          119 NVEKAFQTILS  129 (174)
Q Consensus       119 ~i~~v~~~l~~  129 (174)
                      |++++++.+..
T Consensus       154 gi~~L~~~l~g  164 (298)
T PRK00098        154 GLDELKPLLAG  164 (298)
T ss_pred             cHHHHHhhccC
Confidence            99999987753

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.04  E-value=3.5e-09  Score=81.40  Aligned_cols=120  Identities=18%  Similarity=0.206  Sum_probs=79.4

Q ss_pred             ECCeEEEEEEEeCCCchh--------hhhhhHHhhc-cCCEEEEEEeCCC--hhhHHHHHHHHHHHHhhcCCCCeEEEEE
Q 043745           14 VEGRTIKAQIWDTAGQER--------YRAITSAYYR-GALGALLVYDVTK--PTTFENVSRWLKELRDHADSNIVIMMIG   82 (174)
Q Consensus        14 ~~~~~~~l~l~D~~G~~~--------~~~~~~~~~~-~~d~ii~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~piilv~   82 (174)
                      ++.+..+++++||||.-+        .....-..++ =.++|+|+||.+.  ..+.+.-..++..+....  ..|+++|.
T Consensus       210 fe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~  287 (346)
T COG1084         210 FERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--KAPIVVVI  287 (346)
T ss_pred             eecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEE
Confidence            344456899999999421        1111111222 3689999999985  366777677778887665  38999999


Q ss_pred             eCCCCCCccCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q 043745           83 NKTDLKHLRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEIYRIISK  137 (174)
Q Consensus        83 nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~  137 (174)
                      ||+|+.+...+  ++.......-+ .....+++..+.+++.+-..+...+.+...+
T Consensus       288 nK~D~~~~e~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~a~~~~~e  341 (346)
T COG1084         288 NKIDIADEEKL--EEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKTALEPLLE  341 (346)
T ss_pred             ecccccchhHH--HHHHHHHHhhccccccceeeeehhhHHHHHHHHHHHhhchhhh
Confidence            99999753332  33333344444 4578889999999998888777776554433

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.03  E-value=1.5e-09  Score=83.87  Aligned_cols=86  Identities=15%  Similarity=0.104  Sum_probs=67.8

Q ss_pred             hhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCC
Q 043745           39 YYRGALGALLVYDVTKPT-TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEA  117 (174)
Q Consensus        39 ~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  117 (174)
                      .+.++|.+++|+|+.++. ++..+.+|+..+...   ++|+++|+||+||.+..  .......+....+++++.+||+++
T Consensus        75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA~~g  149 (287)
T cd01854          75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSAKTG  149 (287)
T ss_pred             EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEECCCC
Confidence            478999999999999887 888888898876543   68999999999996531  112233334557889999999999


Q ss_pred             CCHHHHHHHHHH
Q 043745          118 INVEKAFQTILS  129 (174)
Q Consensus       118 ~~i~~v~~~l~~  129 (174)
                      .|+++++..+..
T Consensus       150 ~gi~~L~~~L~~  161 (287)
T cd01854         150 EGLDELREYLKG  161 (287)
T ss_pred             ccHHHHHhhhcc
Confidence            999999887764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK13351 elongation factor G; Reviewed

Probab=99.03  E-value=5.3e-09  Score=89.71  Aligned_cols=72  Identities=18%  Similarity=0.244  Sum_probs=57.3

Q ss_pred             ECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        14 ~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      +......++||||||+.+|...+..+++.+|++++|+|+++.........| ..+..   .++|+++++||+|+..
T Consensus        68 ~~~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~  139 (687)
T PRK13351         68 CDWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG  139 (687)
T ss_pred             EEECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence            334457899999999999999999999999999999999987666554444 33333   2689999999999853

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.02  E-value=4e-09  Score=85.20  Aligned_cols=104  Identities=26%  Similarity=0.186  Sum_probs=68.6

Q ss_pred             CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC-CC
Q 043745           16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA-VA   94 (174)
Q Consensus        16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-~~   94 (174)
                      ....++.||||||+++|.......+..+|++++|+|+.....-+....| ..+....  ..++++++||+|+.+... ..
T Consensus        77 ~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~~~~~~~--~~~iivviNK~D~~~~~~~~~  153 (406)
T TIGR02034        77 TDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-YIASLLG--IRHVVLAVNKMDLVDYDEEVF  153 (406)
T ss_pred             cCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-HHHHHcC--CCcEEEEEEecccccchHHHH
Confidence            3445789999999999977666778899999999999764322211122 2222221  236889999999964221 10


Q ss_pred             ---HHHHHHHHHHhC---CcEEEEeccCCCCHHH
Q 043745           95 ---TEDAQSYAEREG---LSFIETSALEAINVEK  122 (174)
Q Consensus        95 ---~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~  122 (174)
                         .++...+....+   ++++++||++|.|+++
T Consensus       154 ~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       154 ENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence               122333444444   4699999999999885

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=99.01  E-value=2.5e-09  Score=85.12  Aligned_cols=96  Identities=18%  Similarity=0.265  Sum_probs=71.7

Q ss_pred             CchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHH----HHH
Q 043745           28 GQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQS----YAE  103 (174)
Q Consensus        28 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~----~~~  103 (174)
                      ..++|..+...+++.++++++|+|+.+.+     ..|...+..... +.|+++|+||+|+.+ +....++...    +++
T Consensus        49 ~~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-~~piilV~NK~DLl~-k~~~~~~~~~~l~~~~k  121 (360)
T TIGR03597        49 NDDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-GNPVLLVGNKIDLLP-KSVNLSKIKEWMKKRAK  121 (360)
T ss_pred             CHHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-CCCEEEEEEchhhCC-CCCCHHHHHHHHHHHHH
Confidence            35678889999999999999999997653     234455554443 679999999999965 3333444443    355


Q ss_pred             HhCC---cEEEEeccCCCCHHHHHHHHHHH
Q 043745          104 REGL---SFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus       104 ~~~~---~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      ..++   .++.+||+++.|++++++.+.+.
T Consensus       122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            6676   48999999999999999988653

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.00  E-value=2.6e-09  Score=85.47  Aligned_cols=120  Identities=18%  Similarity=0.176  Sum_probs=80.8

Q ss_pred             eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      |...++.+..+++++|||||.+|.......+.-.|++++++|+.+..=- ..+-.+.....   .+.+.|+|+||+|.+.
T Consensus        59 KnTav~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMP-QTrFVlkKAl~---~gL~PIVVvNKiDrp~  134 (603)
T COG1217          59 KNTAVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMP-QTRFVLKKALA---LGLKPIVVINKIDRPD  134 (603)
T ss_pred             ccceeecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCC-chhhhHHHHHH---cCCCcEEEEeCCCCCC
Confidence            3445666668999999999999999999999999999999999874211 11111222222   2566778889999987


Q ss_pred             ccCC-CHHHHHHHH-------HHhCCcEEEEeccCC----------CCHHHHHHHHHHHHHH
Q 043745           90 LRAV-ATEDAQSYA-------EREGLSFIETSALEA----------INVEKAFQTILSEIYR  133 (174)
Q Consensus        90 ~~~~-~~~~~~~~~-------~~~~~~~~~~Sa~~~----------~~i~~v~~~l~~~i~~  133 (174)
                      .+.- -..+...+.       ++++.+++..||+.|          .++..+|+.+++.+..
T Consensus       135 Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~  196 (603)
T COG1217         135 ARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA  196 (603)
T ss_pred             CCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence            5521 123333333       345678999999877          3466666666665544

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=98.99  E-value=2.8e-09  Score=87.56  Aligned_cols=107  Identities=24%  Similarity=0.144  Sum_probs=68.6

Q ss_pred             ECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC
Q 043745           14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV   93 (174)
Q Consensus        14 ~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~   93 (174)
                      +.....++.||||||+++|.......+..+|++++|+|+.....-.....| ..+... . ..|+|+++||+|+.+....
T Consensus       102 ~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~l-g-~~~iIvvvNKiD~~~~~~~  178 (474)
T PRK05124        102 FSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIATLL-G-IKHLVVAVNKMDLVDYSEE  178 (474)
T ss_pred             eccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHHHHh-C-CCceEEEEEeeccccchhH
Confidence            344456789999999999976665667999999999999764211111111 112222 1 2478899999999642211


Q ss_pred             CH----HHHHHHHHHhC----CcEEEEeccCCCCHHHH
Q 043745           94 AT----EDAQSYAEREG----LSFIETSALEAINVEKA  123 (174)
Q Consensus        94 ~~----~~~~~~~~~~~----~~~~~~Sa~~~~~i~~v  123 (174)
                      ..    ++...+....+    .+++++||+++.|+.+.
T Consensus       179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            11    12223333333    67999999999998864

>PRK12740 elongation factor G; Reviewed

Probab=98.98  E-value=1.9e-08  Score=86.16  Aligned_cols=68  Identities=18%  Similarity=0.221  Sum_probs=54.0

Q ss_pred             eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745           17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus        17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      ..+.+.||||||+.+|...+..++..+|++++|+|+++.........| ..+..   .++|+++++||+|+.
T Consensus        58 ~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~  125 (668)
T PRK12740         58 KGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRA  125 (668)
T ss_pred             CCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCC
Confidence            447899999999999888888899999999999999887655544333 33333   268999999999985

>COG2262 HflX GTPases [General function prediction only]

Probab=98.98  E-value=2.2e-08  Score=79.15  Aligned_cols=124  Identities=17%  Similarity=0.141  Sum_probs=83.5

Q ss_pred             ceeEEEECCeEEEEEEEeCCCc---------hhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeE
Q 043745            8 KLCDFQVEGRTIKAQIWDTAGQ---------ERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVI   78 (174)
Q Consensus         8 ~~~~~~~~~~~~~l~l~D~~G~---------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi   78 (174)
                      +++.+.+.+ +..+.+-||-|-         +.|+++... ...+|.++.|+|++++...+.+..-...+....-.++|+
T Consensus       230 ttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE-~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~  307 (411)
T COG2262         230 TTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEE-VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPI  307 (411)
T ss_pred             ceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHH-hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCE
Confidence            344555553 345788899883         234444443 357999999999999976666655545555544356999


Q ss_pred             EEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q 043745           79 MMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK  138 (174)
Q Consensus        79 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~  138 (174)
                      |+|.||+|+.....    .......... ..+.+||+++.|++.+++.|...+......-
T Consensus       308 i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~~~~gl~~L~~~i~~~l~~~~~~~  362 (411)
T COG2262         308 ILVLNKIDLLEDEE----ILAELERGSP-NPVFISAKTGEGLDLLRERIIELLSGLRTEV  362 (411)
T ss_pred             EEEEecccccCchh----hhhhhhhcCC-CeEEEEeccCcCHHHHHHHHHHHhhhcccce
Confidence            99999999754222    1222222222 5889999999999999999888877654333

>PRK12288 GTPase RsgA; Reviewed

Probab=98.97  E-value=5.4e-09  Score=82.61  Aligned_cols=88  Identities=14%  Similarity=0.108  Sum_probs=67.5

Q ss_pred             hccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC-CHHHHHHHHHHhCCcEEEEeccCCC
Q 043745           40 YRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV-ATEDAQSYAEREGLSFIETSALEAI  118 (174)
Q Consensus        40 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~  118 (174)
                      ..++|.+++|+++....++..+..|+..+..   .++|+++|+||+||.+.... ...+.......++++++++||+++.
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~  194 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            3579999999999888899999999875543   36899999999999653211 1122333345678899999999999


Q ss_pred             CHHHHHHHHHHH
Q 043745          119 NVEKAFQTILSE  130 (174)
Q Consensus       119 ~i~~v~~~l~~~  130 (174)
                      |++++++.+...
T Consensus       195 GideL~~~L~~k  206 (347)
T PRK12288        195 GLEELEAALTGR  206 (347)
T ss_pred             CHHHHHHHHhhC
Confidence            999999988653

>PRK13768 GTPase; Provisional

Probab=98.96  E-value=7.3e-09  Score=78.63  Aligned_cols=109  Identities=17%  Similarity=0.121  Sum_probs=70.6

Q ss_pred             EEEEEeCCCchhh---hhhhHHhhcc-----CCEEEEEEeCCChhhHHHH--HHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           20 KAQIWDTAGQERY---RAITSAYYRG-----ALGALLVYDVTKPTTFENV--SRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        20 ~l~l~D~~G~~~~---~~~~~~~~~~-----~d~ii~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      .+.+||+||+.++   +..+..+++.     .++++|++|+.........  ..|+....... .+.|+++|+||+|+.+
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-~~~~~i~v~nK~D~~~  176 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-LGLPQIPVLNKADLLS  176 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-cCCCEEEEEEhHhhcC
Confidence            5789999998763   3344334333     8999999999764333222  23333222222 3689999999999865


Q ss_pred             ccCCCHHHHHH----------------------------HHHHhC--CcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           90 LRAVATEDAQS----------------------------YAEREG--LSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        90 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      ..+.  ++...                            ..+..+  .+++++|++++.|++++++++.+.+
T Consensus       177 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l  246 (253)
T PRK13768        177 EEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF  246 (253)
T ss_pred             chhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence            3221  11111                            122334  5789999999999999999987765

>cd01899 Ygr210 Ygr210 subfamily

Probab=98.95  E-value=1e-08  Score=80.14  Aligned_cols=54  Identities=13%  Similarity=0.137  Sum_probs=37.6

Q ss_pred             CCeEEEEEeCCCCCCccCCCHHHHHHHHHHh-CCcEEEEeccCCCCHHHHHH-HHHHHHH
Q 043745           75 NIVIMMIGNKTDLKHLRAVATEDAQSYAERE-GLSFIETSALEAINVEKAFQ-TILSEIY  132 (174)
Q Consensus        75 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~v~~-~l~~~i~  132 (174)
                      .+|+|+++||.|+.....    ....+.... ..+++.+||+.+.+++++.+ .+++.+.
T Consensus       214 ~KPvI~VlNK~Dl~~~~~----~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lP  269 (318)
T cd01899         214 SKPMVIAANKADIPDAEN----NISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDP  269 (318)
T ss_pred             CCcEEEEEEHHHccChHH----HHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCC
Confidence            479999999999853221    112222233 45799999999999999887 4766653

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>CHL00071 tufA elongation factor Tu

Probab=98.95  E-value=1.4e-08  Score=82.08  Aligned_cols=101  Identities=15%  Similarity=0.130  Sum_probs=69.0

Q ss_pred             CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCCCccCC-
Q 043745           16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIV-IMMIGNKTDLKHLRAV-   93 (174)
Q Consensus        16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~-   93 (174)
                      .+..++.|.||||+.+|.......+..+|++++|+|+..... ....+.+..+...   ++| +|+++||+|+.+..+. 
T Consensus        72 ~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~  147 (409)
T CHL00071         72 TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV---GVPNIVVFLNKEDQVDDEELL  147 (409)
T ss_pred             cCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHH
Confidence            344568899999999988777777889999999999986432 2222333333332   567 7788999999753221 


Q ss_pred             --CHHHHHHHHHHhC-----CcEEEEeccCCCCH
Q 043745           94 --ATEDAQSYAEREG-----LSFIETSALEAINV  120 (174)
Q Consensus        94 --~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i  120 (174)
                        ..+++..+....+     ++++++||.++.++
T Consensus       148 ~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        148 ELVELEVRELLSKYDFPGDDIPIVSGSALLALEA  181 (409)
T ss_pred             HHHHHHHHHHHHHhCCCCCcceEEEcchhhcccc
Confidence              1234555555544     57999999988753

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=98.93  E-value=9.9e-09  Score=83.79  Aligned_cols=107  Identities=18%  Similarity=0.143  Sum_probs=71.5

Q ss_pred             EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChh---hH---HHHHHHHHHHHhhcCCCCe-EEEEEeCC
Q 043745           13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPT---TF---ENVSRWLKELRDHADSNIV-IMMIGNKT   85 (174)
Q Consensus        13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~p-iilv~nK~   85 (174)
                      .+......+.|+|+||+.+|.......+..+|++++|+|+++..   .+   ....+.+..+...   ++| +|+++||+
T Consensus        79 ~~~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKm  155 (446)
T PTZ00141         79 KFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKM  155 (446)
T ss_pred             EEccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEcc
Confidence            34555678999999999999888888889999999999998642   01   1222333333332   455 77899999


Q ss_pred             CCCC--c-c---CCCHHHHHHHHHHhC-----CcEEEEeccCCCCHHH
Q 043745           86 DLKH--L-R---AVATEDAQSYAEREG-----LSFIETSALEAINVEK  122 (174)
Q Consensus        86 Dl~~--~-~---~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  122 (174)
                      |+..  . +   +...+++..+....+     ++++++||.+|+|+.+
T Consensus       156 D~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        156 DDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             ccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            9532  0 0   111233444444443     5689999999999864

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=98.92  E-value=1e-08  Score=76.63  Aligned_cols=114  Identities=20%  Similarity=0.339  Sum_probs=73.2

Q ss_pred             EEEEEEEeCCCchhhh-----hhhHHhhccCCEEEEEEeCCChh---hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           18 TIKAQIWDTAGQERYR-----AITSAYYRGALGALLVYDVTKPT---TFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~-----~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      .+.+++||+||+..+.     ......+++++++|||+|+.+.+   .+..+...+..+.++.+ ++.+.++.+|+|+..
T Consensus        47 ~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp-~~~v~vfiHK~D~l~  125 (232)
T PF04670_consen   47 FLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSP-NIKVFVFIHKMDLLS  125 (232)
T ss_dssp             SCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHST-T-EEEEEEE-CCCS-
T ss_pred             CcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCC-CCeEEEEEeecccCC
Confidence            3579999999997553     34788899999999999998544   33444555666666655 899999999999854


Q ss_pred             c--cCCC----HHHHHHHHHHhC---CcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           90 L--RAVA----TEDAQSYAEREG---LSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        90 ~--~~~~----~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      +  +...    .+.+.+.+...+   +.++.+|.-+ +.+-+.|..+++.+..
T Consensus       126 ~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~LiP  177 (232)
T PF04670_consen  126 EDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQKLIP  177 (232)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHHTTST
T ss_pred             HHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHHHHcc
Confidence            2  1111    122333444555   5677777654 5777777777766554

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PRK00049 elongation factor Tu; Reviewed

Probab=98.90  E-value=4.7e-08  Score=78.82  Aligned_cols=101  Identities=17%  Similarity=0.145  Sum_probs=67.0

Q ss_pred             ECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE-EEEeCCCCCCccC
Q 043745           14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM-MIGNKTDLKHLRA   92 (174)
Q Consensus        14 ~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~Dl~~~~~   92 (174)
                      +.....++.|.||||+.+|.......+..+|++++|+|+.+... ....+++..+...   ++|.+ +++||+|+.+...
T Consensus        70 ~~~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~  145 (396)
T PRK00049         70 YETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEE  145 (396)
T ss_pred             EcCCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc---CCCEEEEEEeecCCcchHH
Confidence            33344578899999999887777777899999999999986422 2223334444333   57865 5799999964222


Q ss_pred             C---CHHHHHHHHHHhC-----CcEEEEeccCCC
Q 043745           93 V---ATEDAQSYAEREG-----LSFIETSALEAI  118 (174)
Q Consensus        93 ~---~~~~~~~~~~~~~-----~~~~~~Sa~~~~  118 (174)
                      .   ...++..+....+     ++++.+||+++.
T Consensus       146 ~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~  179 (396)
T PRK00049        146 LLELVEMEVRELLSKYDFPGDDTPIIRGSALKAL  179 (396)
T ss_pred             HHHHHHHHHHHHHHhcCCCccCCcEEEeeccccc
Confidence            1   1123444444433     579999999875

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=98.89  E-value=1.2e-08  Score=78.07  Aligned_cols=69  Identities=19%  Similarity=0.196  Sum_probs=53.2

Q ss_pred             eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      +..++.||||||+.+|...+..+++.+|++++|+|+.+...-.. ..++..+..   .++|+++++||+|+..
T Consensus        62 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~  130 (270)
T cd01886          62 KDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR---YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             CCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence            45778999999999998889999999999999999987532222 233333333   2689999999999974

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PLN03127 Elongation factor Tu; Provisional

Probab=98.87  E-value=4.9e-08  Score=79.74  Aligned_cols=99  Identities=15%  Similarity=0.104  Sum_probs=62.1

Q ss_pred             EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCCCcc
Q 043745           13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIV-IMMIGNKTDLKHLR   91 (174)
Q Consensus        13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~   91 (174)
                      .+.....++.|.||||+.+|.......+..+|++++|+|+.+...-+ ..+.+..+...   ++| +|+++||+|+.+..
T Consensus       118 ~~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~~---gip~iIvviNKiDlv~~~  193 (447)
T PLN03127        118 EYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV---GVPSLVVFLNKVDVVDDE  193 (447)
T ss_pred             EEcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCeEEEEEEeeccCCHH
Confidence            34444567899999999988766656667899999999997643221 22333333332   578 57889999996422


Q ss_pred             CCCH---HHHHHHHHHh-----CCcEEEEecc
Q 043745           92 AVAT---EDAQSYAERE-----GLSFIETSAL  115 (174)
Q Consensus        92 ~~~~---~~~~~~~~~~-----~~~~~~~Sa~  115 (174)
                      +...   .+.+++....     .++++.+||.
T Consensus       194 ~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~  225 (447)
T PLN03127        194 ELLELVEMELRELLSFYKFPGDEIPIIRGSAL  225 (447)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcceEEEeccc
Confidence            2111   1233333332     2578888875

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.85  E-value=3.2e-08  Score=84.22  Aligned_cols=103  Identities=25%  Similarity=0.214  Sum_probs=67.5

Q ss_pred             eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc-cCC--
Q 043745           17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL-RAV--   93 (174)
Q Consensus        17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~-~~~--   93 (174)
                      ...++.|+||||+++|.......+..+|++++|+|+.....-. ..+.+..+....  ..++++++||+|+.+. ...  
T Consensus       102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~~~~~~~--~~~iivvvNK~D~~~~~~~~~~  178 (632)
T PRK05506        102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSFIASLLG--IRHVVLAVNKMDLVDYDQEVFD  178 (632)
T ss_pred             CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHHHHHHhC--CCeEEEEEEecccccchhHHHH
Confidence            3456789999999998776666788999999999997642211 111222222221  2578899999999641 111  


Q ss_pred             -CHHHHHHHHHHhC---CcEEEEeccCCCCHHH
Q 043745           94 -ATEDAQSYAEREG---LSFIETSALEAINVEK  122 (174)
Q Consensus        94 -~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~  122 (174)
                       ...+..++...++   .+++++||++|.|+.+
T Consensus       179 ~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        179 EIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence             1122333445555   4699999999999874

>PLN03126 Elongation factor Tu; Provisional

Probab=98.85  E-value=3.2e-08  Score=81.30  Aligned_cols=101  Identities=16%  Similarity=0.111  Sum_probs=69.3

Q ss_pred             CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCCCccCC
Q 043745           15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIV-IMMIGNKTDLKHLRAV   93 (174)
Q Consensus        15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~   93 (174)
                      ..+...+.|+|+||+++|.......+..+|++++|+|+.+...-. ..+++..+...   ++| +++++||+|+.+..+.
T Consensus       140 ~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~  215 (478)
T PLN03126        140 ETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQV---GVPNMVVFLNKQDQVDDEEL  215 (478)
T ss_pred             ecCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEecccccCHHHH
Confidence            334457899999999999887777778999999999998653222 23444444333   567 7889999999652221


Q ss_pred             ---CHHHHHHHHHHh-----CCcEEEEeccCCCC
Q 043745           94 ---ATEDAQSYAERE-----GLSFIETSALEAIN  119 (174)
Q Consensus        94 ---~~~~~~~~~~~~-----~~~~~~~Sa~~~~~  119 (174)
                         ..++++.+....     .++++++||.++.+
T Consensus       216 ~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        216 LELVELEVRELLSSYEFPGDDIPIISGSALLALE  249 (478)
T ss_pred             HHHHHHHHHHHHHhcCCCcCcceEEEEEcccccc
Confidence               112445555554     35799999988854

>TIGR00503 prfC peptide chain release factor 3

Probab=98.84  E-value=3.6e-08  Score=81.94  Aligned_cols=75  Identities=21%  Similarity=0.202  Sum_probs=56.6

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      .+.++.+.+.++||||||+.+|......++..+|++|+|+|+++.-. .....++.....   .++|+++++||+|+..
T Consensus        72 ~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~~  146 (527)
T TIGR00503        72 VMQFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             EEEEeeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence            34566777899999999999988877778899999999999987421 122344443332   3689999999999864

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.81  E-value=6.6e-08  Score=77.78  Aligned_cols=128  Identities=17%  Similarity=0.210  Sum_probs=83.2

Q ss_pred             CCCccce-eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChh-------hHHHH---HHHHHHHHhh
Q 043745            3 QPRLGKL-CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPT-------TFENV---SRWLKELRDH   71 (174)
Q Consensus         3 ~pt~g~~-~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-------s~~~~---~~~~~~i~~~   71 (174)
                      .+|.|.. ..+.++ ....+.|+|++|+...++.|..++.++++||||+++++.+       ..+++   ...+..+...
T Consensus       220 ~~T~Gi~e~~f~~~-~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~  298 (389)
T PF00503_consen  220 VKTTGITEIDFNFS-GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNN  298 (389)
T ss_dssp             ---SSEEEEEEEE--TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTS
T ss_pred             CCCCCeeEEEEEee-cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhC
Confidence            4778833 334441 4477899999999999999999999999999999987532       12233   3333444332


Q ss_pred             cC-CCCeEEEEEeCCCCCCc----------------c--CCCHHHHHHHHHHh------------CCcEEEEeccCCCCH
Q 043745           72 AD-SNIVIMMIGNKTDLKHL----------------R--AVATEDAQSYAERE------------GLSFIETSALEAINV  120 (174)
Q Consensus        72 ~~-~~~piilv~nK~Dl~~~----------------~--~~~~~~~~~~~~~~------------~~~~~~~Sa~~~~~i  120 (174)
                      .- .+.|+||+.||.|+-.+                .  .-+.+.+..+....            .+.++.++|.+..++
T Consensus       299 ~~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~  378 (389)
T PF00503_consen  299 PWFKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENI  378 (389)
T ss_dssp             GGGTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHH
T ss_pred             cccccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHH
Confidence            22 57999999999996210                1  12344555554322            124668899988899


Q ss_pred             HHHHHHHHHHH
Q 043745          121 EKAFQTILSEI  131 (174)
Q Consensus       121 ~~v~~~l~~~i  131 (174)
                      ..+|+.+.+.|
T Consensus       379 ~~v~~~v~~~i  389 (389)
T PF00503_consen  379 RKVFNAVKDII  389 (389)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHhcCcC
Confidence            99999887654

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=98.81  E-value=2.1e-08  Score=80.81  Aligned_cols=135  Identities=22%  Similarity=0.272  Sum_probs=85.3

Q ss_pred             CCCCCcccee------------------------EEEECCeEEEEEEEeCCCchh-hhh--------hhHHhhccCCEEE
Q 043745            1 MGQPRLGKLC------------------------DFQVEGRTIKAQIWDTAGQER-YRA--------ITSAYYRGALGAL   47 (174)
Q Consensus         1 ~g~pt~g~~~------------------------~~~~~~~~~~l~l~D~~G~~~-~~~--------~~~~~~~~~d~ii   47 (174)
                      +|+||+||+.                        +..++-+++.+.|.||+|..+ -..        .....++.+|+++
T Consensus       274 vGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~  353 (531)
T KOG1191|consen  274 VGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVIL  353 (531)
T ss_pred             EcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEE
Confidence            5899999766                        334444457889999999765 111        1344567899999


Q ss_pred             EEEeC--CChhhHHHHHHHHHHHHhhcC------CCCeEEEEEeCCCCCCc-cCCCHHHHHHHHHHhC---Cc-EEEEec
Q 043745           48 LVYDV--TKPTTFENVSRWLKELRDHAD------SNIVIMMIGNKTDLKHL-RAVATEDAQSYAEREG---LS-FIETSA  114 (174)
Q Consensus        48 ~v~d~--~~~~s~~~~~~~~~~i~~~~~------~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~---~~-~~~~Sa  114 (174)
                      ||+|+  ++.++...+.+.+.....-..      ...|++++.||.|+... .+..... ..+....+   .+ +.++|+
T Consensus       354 ~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~-~~~~~~~~~~~~~i~~~vs~  432 (531)
T KOG1191|consen  354 LVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIP-VVYPSAEGRSVFPIVVEVSC  432 (531)
T ss_pred             EEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCc-eeccccccCcccceEEEeee
Confidence            99999  444444444444444322111      23789999999998653 1111111 11111122   34 456999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHh
Q 043745          115 LEAINVEKAFQTILSEIYRIIS  136 (174)
Q Consensus       115 ~~~~~i~~v~~~l~~~i~~~~~  136 (174)
                      ++++|++.+.+.+...+.....
T Consensus       433 ~tkeg~~~L~~all~~~~~~~~  454 (531)
T KOG1191|consen  433 TTKEGCERLSTALLNIVERLVV  454 (531)
T ss_pred             chhhhHHHHHHHHHHHHHHhhc
Confidence            9999999999998888777654

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=98.80  E-value=1.1e-07  Score=72.66  Aligned_cols=88  Identities=20%  Similarity=0.214  Sum_probs=62.5

Q ss_pred             eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHH
Q 043745           17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATE   96 (174)
Q Consensus        17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~   96 (174)
                      ....+.||||||+.+|...+..++..+|++++|+|+++.........| ..+..   .++|+++++||+|+...  ....
T Consensus        62 ~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~--~~~~  135 (268)
T cd04170          62 KGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERA--DFDK  135 (268)
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCC--CHHH
Confidence            446789999999999888888899999999999999986544433333 23332   26899999999998753  1223


Q ss_pred             HHHHHHHHhCCcEE
Q 043745           97 DAQSYAEREGLSFI  110 (174)
Q Consensus        97 ~~~~~~~~~~~~~~  110 (174)
                      ....+...++.+++
T Consensus       136 ~~~~l~~~~~~~~~  149 (268)
T cd04170         136 TLAALQEAFGRPVV  149 (268)
T ss_pred             HHHHHHHHhCCCeE
Confidence            44455555665444

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>COG0218 Predicted GTPase [General function prediction only]

Probab=98.80  E-value=1.3e-07  Score=68.35  Aligned_cols=107  Identities=17%  Similarity=0.233  Sum_probs=71.4

Q ss_pred             EEEEeCCC----------chhhhhhhHHhhcc---CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745           21 AQIWDTAG----------QERYRAITSAYYRG---ALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL   87 (174)
Q Consensus        21 l~l~D~~G----------~~~~~~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl   87 (174)
                      +.|+|.||          ++.+..+...|++.   ..++++++|+.....-.+. +.+..+...   ++|+++++||+|.
T Consensus        72 ~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~---~i~~~vv~tK~DK  147 (200)
T COG0218          72 LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLEL---GIPVIVVLTKADK  147 (200)
T ss_pred             EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHHc---CCCeEEEEEcccc
Confidence            78999998          56677778888764   5688889999876433222 222323332   7899999999998


Q ss_pred             CCccCCCHHHHHHHHHHhC----Cc--EEEEeccCCCCHHHHHHHHHHHHH
Q 043745           88 KHLRAVATEDAQSYAEREG----LS--FIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~----~~--~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      -...+. .......+..++    ..  ++..|+.++.|++++...|.+.+.
T Consensus       148 i~~~~~-~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~  197 (200)
T COG0218         148 LKKSER-NKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK  197 (200)
T ss_pred             CChhHH-HHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence            653222 122233333332    22  778899999999999888877654

>PRK12739 elongation factor G; Reviewed

Probab=98.75  E-value=1.9e-07  Score=80.30  Aligned_cols=69  Identities=17%  Similarity=0.173  Sum_probs=52.7

Q ss_pred             eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      +..++.|+||||+.+|...+...+..+|++++|+|+.+...-... ..+..+..   .++|+|+++||+|+..
T Consensus        71 ~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~---~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         71 KGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK---YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             CCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence            346789999999999888889999999999999999875433322 23333333   2689999999999853

>TIGR00484 EF-G translation elongation factor EF-G

Probab=98.75  E-value=9e-08  Score=82.21  Aligned_cols=95  Identities=16%  Similarity=0.119  Sum_probs=65.1

Q ss_pred             eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHH
Q 043745           17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATE   96 (174)
Q Consensus        17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~   96 (174)
                      ++..+.||||||+.+|...+..++..+|+++||+|+.+........ ++..+...   ++|+++++||+|+....  -..
T Consensus        73 ~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~~---~~p~ivviNK~D~~~~~--~~~  146 (689)
T TIGR00484        73 KGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQANRY---EVPRIAFVNKMDKTGAN--FLR  146 (689)
T ss_pred             CCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHHHc---CCCEEEEEECCCCCCCC--HHH
Confidence            4578899999999998888889999999999999998865444332 33333332   68999999999997532  123


Q ss_pred             HHHHHHHHhCC----cEEEEeccCC
Q 043745           97 DAQSYAEREGL----SFIETSALEA  117 (174)
Q Consensus        97 ~~~~~~~~~~~----~~~~~Sa~~~  117 (174)
                      ....+...++.    ..+.+|+..+
T Consensus       147 ~~~~i~~~l~~~~~~~~ipis~~~~  171 (689)
T TIGR00484       147 VVNQIKQRLGANAVPIQLPIGAEDN  171 (689)
T ss_pred             HHHHHHHHhCCCceeEEeccccCCC
Confidence            34444454443    2455555444

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.75  E-value=7.6e-08  Score=69.95  Aligned_cols=109  Identities=18%  Similarity=0.264  Sum_probs=73.8

Q ss_pred             EEEEeCCCchhhhhhhHHhhc---cCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhc---CCCCeEEEEEeCCCCCCccC-
Q 043745           21 AQIWDTAGQERYRAITSAYYR---GALGALLVYDVTKP-TTFENVSRWLKELRDHA---DSNIVIMMIGNKTDLKHLRA-   92 (174)
Q Consensus        21 l~l~D~~G~~~~~~~~~~~~~---~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~-   92 (174)
                      ++++|.|||++.+.....+++   .+-+++||+|..-. ....++.+++-.+....   ...+|++++.||+|+...+. 
T Consensus        84 ~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~  163 (238)
T KOG0090|consen   84 VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTA  163 (238)
T ss_pred             eEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcH
Confidence            789999999999887777777   79999999998743 34555555554443322   35689999999999843211 


Q ss_pred             -----CCHHHHHHHH--------------------------------HHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745           93 -----VATEDAQSYA--------------------------------EREGLSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        93 -----~~~~~~~~~~--------------------------------~~~~~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                           .-+.|+..+.                                ....+.+.++|++++ +++++.+|+.+.
T Consensus       164 ~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  164 EKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                 1111111111                                112345888999988 899999988764

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=98.72  E-value=2.5e-07  Score=67.58  Aligned_cols=108  Identities=11%  Similarity=0.133  Sum_probs=64.9

Q ss_pred             EEEEEeCCCchhhhhhhH-----HhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEeCCCCCCccC-
Q 043745           20 KAQIWDTAGQERYRAITS-----AYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHADSNIVIMMIGNKTDLKHLRA-   92 (174)
Q Consensus        20 ~l~l~D~~G~~~~~~~~~-----~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-   92 (174)
                      .+.+||++|.........     ..+.++|+++++.+-    ++... ..|+..+...   +.|+++|+||+|+..... 
T Consensus        53 ~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~  125 (197)
T cd04104          53 NVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQ  125 (197)
T ss_pred             CceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCC----CCCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhh
Confidence            589999999754322222     226678998888432    23333 3455555544   579999999999842111 


Q ss_pred             ----------CCHHHHHHHHH----HhC--C-cEEEEecc--CCCCHHHHHHHHHHHHHHH
Q 043745           93 ----------VATEDAQSYAE----REG--L-SFIETSAL--EAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        93 ----------~~~~~~~~~~~----~~~--~-~~~~~Sa~--~~~~i~~v~~~l~~~i~~~  134 (174)
                                ...++.++.+.    ..+  . ++|-+|+.  .+.++..+.+.|+..+...
T Consensus       126 ~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~  186 (197)
T cd04104         126 RSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH  186 (197)
T ss_pred             ccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence                      01111222221    212  2 58888887  4678888888888877653

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.71  E-value=6.5e-08  Score=69.50  Aligned_cols=72  Identities=24%  Similarity=0.384  Sum_probs=48.8

Q ss_pred             EEEEEEeCCCchhhhhh-hHH--hhccCCEEEEEEeCCC-hhhHHHHHHHHHHHHhhc---CCCCeEEEEEeCCCCCCc
Q 043745           19 IKAQIWDTAGQERYRAI-TSA--YYRGALGALLVYDVTK-PTTFENVSRWLKELRDHA---DSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~-~~~--~~~~~d~ii~v~d~~~-~~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~   90 (174)
                      -.+.++|+|||.+.+.. ...  +...+.+||||+|.+. ...+.++.+++-.+....   ...+|++|++||+|+...
T Consensus        49 ~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   49 KKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             TCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred             CEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence            35789999999988763 333  5889999999999975 345666655544443222   257999999999999764

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>cd01858 NGP_1 NGP-1

Probab=98.69  E-value=1.1e-07  Score=66.97  Aligned_cols=88  Identities=14%  Similarity=0.094  Sum_probs=55.9

Q ss_pred             hhccCCEEEEEEeCCChhh--HHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccC
Q 043745           39 YYRGALGALLVYDVTKPTT--FENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALE  116 (174)
Q Consensus        39 ~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  116 (174)
                      .++++|.+++|+|+.++..  ...+.+++.   .. ..+.|+++|+||+|+.+...+ ......+...+....+.+||+.
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~   79 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLK---KE-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINN   79 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccCHHHHHHHH---hc-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccc
Confidence            4678999999999988632  223333332   22 235899999999999642211 1112222222222357899999


Q ss_pred             CCCHHHHHHHHHHHH
Q 043745          117 AINVEKAFQTILSEI  131 (174)
Q Consensus       117 ~~~i~~v~~~l~~~i  131 (174)
                      +.|++++++.+.+..
T Consensus        80 ~~~~~~L~~~l~~~~   94 (157)
T cd01858          80 PFGKGSLIQLLRQFS   94 (157)
T ss_pred             cccHHHHHHHHHHHH
Confidence            999999998886653

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.64  E-value=2.4e-07  Score=65.13  Aligned_cols=84  Identities=15%  Similarity=0.064  Sum_probs=55.2

Q ss_pred             CEEEEEEeCCChhhHHHHHHHHH-HHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHH
Q 043745           44 LGALLVYDVTKPTTFENVSRWLK-ELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEK  122 (174)
Q Consensus        44 d~ii~v~d~~~~~s~~~~~~~~~-~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  122 (174)
                      |.+++|+|+.++.+...  .|+. ....  ..++|+++|+||+|+.+..++ .+....+....+..++.+||+++.|+++
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~--~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~   75 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIERVLIK--EKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEK   75 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHHHHHh--cCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhh
Confidence            78999999988755442  2333 1111  136899999999999542111 1111123233356789999999999999


Q ss_pred             HHHHHHHHHH
Q 043745          123 AFQTILSEIY  132 (174)
Q Consensus       123 v~~~l~~~i~  132 (174)
                      +++.+.+...
T Consensus        76 L~~~i~~~~~   85 (155)
T cd01849          76 KESAFTKQTN   85 (155)
T ss_pred             HHHHHHHHhH
Confidence            9998877654

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.63  E-value=2.8e-07  Score=73.09  Aligned_cols=109  Identities=19%  Similarity=0.157  Sum_probs=71.9

Q ss_pred             EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChh---hHH---HHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 043745           13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPT---TFE---NVSRWLKELRDHADSNIVIMMIGNKTD   86 (174)
Q Consensus        13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~piilv~nK~D   86 (174)
                      .+......+.++|+||+.+|.+..-.-..+||+.|||+|+.+.+   .|.   ..++.+...+. .+ -..+|++.||+|
T Consensus        79 ~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~t-lG-i~~lIVavNKMD  156 (428)
T COG5256          79 KFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLART-LG-IKQLIVAVNKMD  156 (428)
T ss_pred             EeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHh-cC-CceEEEEEEccc
Confidence            45555678999999999999887777778999999999998764   111   12222222222 22 246888899999


Q ss_pred             CCCccCCCH----HHHHHHHHHhC-----CcEEEEeccCCCCHHHH
Q 043745           87 LKHLRAVAT----EDAQSYAEREG-----LSFIETSALEAINVEKA  123 (174)
Q Consensus        87 l~~~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~v  123 (174)
                      +.+-++--.    .+...+.+..|     ++|+++||..|.|+.+.
T Consensus       157 ~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         157 LVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence            975211111    22233444444     46999999999997653

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.61  E-value=2.4e-07  Score=64.09  Aligned_cols=77  Identities=21%  Similarity=0.264  Sum_probs=53.0

Q ss_pred             HHhhccCCEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEec
Q 043745           37 SAYYRGALGALLVYDVTKPTTFE--NVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSA  114 (174)
Q Consensus        37 ~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  114 (174)
                      ...++++|++++|+|+.++.+..  .+.+|+...   . .+.|+++|+||+|+.++..  ..+..++....+..++++||
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa   79 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA   79 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence            44578999999999998876543  344454432   1 3689999999999964221  22344455566788999999


Q ss_pred             cCCCC
Q 043745          115 LEAIN  119 (174)
Q Consensus       115 ~~~~~  119 (174)
                      +++.+
T Consensus        80 ~~~~~   84 (141)
T cd01857          80 LKENA   84 (141)
T ss_pred             cCCCc
Confidence            87753

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK13796 GTPase YqeH; Provisional

Probab=98.59  E-value=5.8e-07  Score=71.74  Aligned_cols=93  Identities=18%  Similarity=0.333  Sum_probs=63.2

Q ss_pred             hhhhhhhHHhhccCC-EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHH----HHH
Q 043745           30 ERYRAITSAYYRGAL-GALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSY----AER  104 (174)
Q Consensus        30 ~~~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~  104 (174)
                      ++|....... ...+ .+++|+|+.|..     ..|...+..... +.|+++|+||+||.+ +....++...+    ++.
T Consensus        57 ~~~~~~l~~i-~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~-~~~~~~~i~~~l~~~~k~  128 (365)
T PRK13796         57 DDFLKLLNGI-GDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLP-KSVKKNKVKNWLRQEAKE  128 (365)
T ss_pred             HHHHHHHHhh-cccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCC-CccCHHHHHHHHHHHHHh
Confidence            4555554444 4444 999999997743     234455544433 679999999999965 33334444433    455


Q ss_pred             hCC---cEEEEeccCCCCHHHHHHHHHHH
Q 043745          105 EGL---SFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus       105 ~~~---~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      +++   .++.+||+++.|++++++.+.+.
T Consensus       129 ~g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        129 LGLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             cCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            565   58999999999999999988654

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=98.55  E-value=1.9e-06  Score=66.50  Aligned_cols=112  Identities=22%  Similarity=0.197  Sum_probs=75.0

Q ss_pred             ECCeEEEEEEEeCCCchhh-------hhhhHHhhccCCEEEEEEeCCChhh-HHHHHHHHH-------------------
Q 043745           14 VEGRTIKAQIWDTAGQERY-------RAITSAYYRGALGALLVYDVTKPTT-FENVSRWLK-------------------   66 (174)
Q Consensus        14 ~~~~~~~l~l~D~~G~~~~-------~~~~~~~~~~~d~ii~v~d~~~~~s-~~~~~~~~~-------------------   66 (174)
                      +.+++.++++.|+||.-.-       ....-...+.||.+++|+|+..... .+.+.+.+.                   
T Consensus       105 l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~  184 (365)
T COG1163         105 LEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKE  184 (365)
T ss_pred             EeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEec
Confidence            3556688999999984321       1234456789999999999986554 333322222                   


Q ss_pred             -------------------------HHHhhc-------------------C--CCCeEEEEEeCCCCCCccCCCHHHHHH
Q 043745           67 -------------------------ELRDHA-------------------D--SNIVIMMIGNKTDLKHLRAVATEDAQS  100 (174)
Q Consensus        67 -------------------------~i~~~~-------------------~--~~~piilv~nK~Dl~~~~~~~~~~~~~  100 (174)
                                               +..-+.                   .  .-+|.++|.||+|+..     .++...
T Consensus       185 ~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~  259 (365)
T COG1163         185 SGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELER  259 (365)
T ss_pred             cCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHH
Confidence                                     100000                   0  1379999999999965     344555


Q ss_pred             HHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745          101 YAEREGLSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus       101 ~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      +.+..  .++.+||+++.|++++.+.|.+.+-
T Consensus       260 l~~~~--~~v~isa~~~~nld~L~e~i~~~L~  289 (365)
T COG1163         260 LARKP--NSVPISAKKGINLDELKERIWDVLG  289 (365)
T ss_pred             HHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence            55444  8899999999999999988887653

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=98.55  E-value=2.6e-07  Score=77.82  Aligned_cols=115  Identities=20%  Similarity=0.183  Sum_probs=82.4

Q ss_pred             EEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc------c
Q 043745           21 AQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP---TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL------R   91 (174)
Q Consensus        21 l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~------~   91 (174)
                      +.++||||++.|..++.....-||.+|+|+|+...   ++.+.+    +.++..   +.|+||..||+|..-.      .
T Consensus       542 ~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi----~lLR~r---ktpFivALNKiDRLYgwk~~p~~  614 (1064)
T KOG1144|consen  542 LLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI----NLLRMR---KTPFIVALNKIDRLYGWKSCPNA  614 (1064)
T ss_pred             eEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHH----HHHHhc---CCCeEEeehhhhhhcccccCCCc
Confidence            78999999999999999999999999999999853   444432    334433   7899999999996210      0


Q ss_pred             C-------CCHH-----------HHHHHHHH-hC-------------CcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q 043745           92 A-------VATE-----------DAQSYAER-EG-------------LSFIETSALEAINVEKAFQTILSEIYRIISKKS  139 (174)
Q Consensus        92 ~-------~~~~-----------~~~~~~~~-~~-------------~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~  139 (174)
                      .       ....           .+.+|+.+ ++             +.++++||.+|+||-+++-+|++.....|.++-
T Consensus       615 ~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl  694 (1064)
T KOG1144|consen  615 PIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKL  694 (1064)
T ss_pred             hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHH
Confidence            0       0011           11222221 11             247899999999999999999999999887775


Q ss_pred             CCC
Q 043745          140 LSS  142 (174)
Q Consensus       140 ~~~  142 (174)
                      ...
T Consensus       695 ~y~  697 (1064)
T KOG1144|consen  695 AYV  697 (1064)
T ss_pred             hhh
Confidence            443

>cd01856 YlqF YlqF

Probab=98.54  E-value=4.2e-07  Score=64.92  Aligned_cols=95  Identities=19%  Similarity=0.113  Sum_probs=63.0

Q ss_pred             hhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEE
Q 043745           31 RYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFI  110 (174)
Q Consensus        31 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  110 (174)
                      +........++++|.+++|+|+.++..... ..++..+     .+.|+++|+||+|+.+...  .....++....+..++
T Consensus         8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~vi   79 (171)
T cd01856           8 KALRQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKIL-----GNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKVL   79 (171)
T ss_pred             HHHHHHHHHHhhCCEEEEEeeccCccCcCC-hhhHhHh-----cCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeEE
Confidence            344556777899999999999986543221 1122221     2478999999999964211  1122223333456789


Q ss_pred             EEeccCCCCHHHHHHHHHHHHHH
Q 043745          111 ETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus       111 ~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      .+||+++.|++++.+.+...+..
T Consensus        80 ~iSa~~~~gi~~L~~~l~~~l~~  102 (171)
T cd01856          80 FVNAKSGKGVKKLLKAAKKLLKD  102 (171)
T ss_pred             EEECCCcccHHHHHHHHHHHHHH
Confidence            99999999999999988887643

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR00101 ureG urease accessory protein UreG

Probab=98.52  E-value=1.6e-06  Score=63.54  Aligned_cols=103  Identities=14%  Similarity=0.092  Sum_probs=64.8

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHH
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDA   98 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~   98 (174)
                      ....+.++.|..--..... .+  +|.+|.|+|+.+.++...  .+..++      ...=++++||+|+.+......+..
T Consensus        92 ~D~iiIEt~G~~l~~~~~~-~l--~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~  160 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP-EL--ADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM  160 (199)
T ss_pred             CCEEEEECCCCCcccccch-hh--hCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence            4456788888432122222 22  688999999987655321  111222      112278889999974222223444


Q ss_pred             HHHHHHh--CCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           99 QSYAERE--GLSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        99 ~~~~~~~--~~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      .+.++.+  +.+++++||++|+|++++|+++.+..+
T Consensus       161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            4455543  478999999999999999999987643

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=98.50  E-value=5.1e-07  Score=73.17  Aligned_cols=124  Identities=15%  Similarity=0.170  Sum_probs=82.8

Q ss_pred             ECCeEEEEEEEeCCCchhhh----hh-----hHHhhccCCEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCeEEEEE
Q 043745           14 VEGRTIKAQIWDTAGQERYR----AI-----TSAYYRGALGALLVYDVTKP--TTFENVSRWLKELRDHADSNIVIMMIG   82 (174)
Q Consensus        14 ~~~~~~~l~l~D~~G~~~~~----~~-----~~~~~~~~d~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piilv~   82 (174)
                      ++.+=.++++.||||.-+-.    ..     +....+=--+|+|+.|++..  .|...--.++..|.-.. .+.|+|+|+
T Consensus       210 ~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~Ilvl  288 (620)
T KOG1490|consen  210 LDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVL  288 (620)
T ss_pred             hhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEe
Confidence            35555688999999953221    01     11111123478889999863  56655555566665433 378999999


Q ss_pred             eCCCCCCccCCCHHHH---HHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q 043745           83 NKTDLKHLRAVATEDA---QSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK  138 (174)
Q Consensus        83 nK~Dl~~~~~~~~~~~---~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~  138 (174)
                      ||+|+.....++++..   ..+...-+++++++|..+.+|+-+|-....+.++...-+.
T Consensus       289 NK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~RVE~  347 (620)
T KOG1490|consen  289 NKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEALLAARVEQ  347 (620)
T ss_pred             ecccccCccccCHHHHHHHHHHHhccCceEEEecccchhceeeHHHHHHHHHHHHHHHH
Confidence            9999977666665443   3334444589999999999999998888887777664433

>PRK09602 translation-associated GTPase; Reviewed

Probab=98.49  E-value=1.8e-06  Score=69.50  Aligned_cols=51  Identities=20%  Similarity=0.269  Sum_probs=33.8

Q ss_pred             CCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHH-HHHHHHH
Q 043745           75 NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEK-AFQTILS  129 (174)
Q Consensus        75 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~-v~~~l~~  129 (174)
                      .+|+|+|+||.|+....    +....+.+..+..++.+||+.+.++++ +++.+++
T Consensus       217 ~KPvI~VlNK~D~~~~~----~~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~  268 (396)
T PRK09602        217 SKPMVIAANKADLPPAE----ENIERLKEEKYYIVVPTSAEAELALRRAAKAGLID  268 (396)
T ss_pred             CCCEEEEEEchhcccch----HHHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHh
Confidence            48999999999975321    112333333345789999999999887 4444433

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.47  E-value=8.2e-07  Score=59.40  Aligned_cols=98  Identities=19%  Similarity=0.169  Sum_probs=72.7

Q ss_pred             EEeCCC----chhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHH
Q 043745           23 IWDTAG----QERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDA   98 (174)
Q Consensus        23 l~D~~G----~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~   98 (174)
                      ..||||    +..+++.......++|++++|-.+.++++.-.     ..+....  ..|+|-|++|.||.+..  ..+..
T Consensus        41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~-----p~f~~~~--~k~vIgvVTK~DLaed~--dI~~~  111 (148)
T COG4917          41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFP-----PGFLDIG--VKKVIGVVTKADLAEDA--DISLV  111 (148)
T ss_pred             ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCC-----ccccccc--ccceEEEEecccccchH--hHHHH
Confidence            478888    34555556666789999999999998754321     2233332  45699999999998633  35677


Q ss_pred             HHHHHHhCC-cEEEEeccCCCCHHHHHHHHHH
Q 043745           99 QSYAEREGL-SFIETSALEAINVEKAFQTILS  129 (174)
Q Consensus        99 ~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~  129 (174)
                      +.|..+.|. ++|++|+.++.|+++++..+..
T Consensus       112 ~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~  143 (148)
T COG4917         112 KRWLREAGAEPIFETSAVDNQGVEELVDYLAS  143 (148)
T ss_pred             HHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence            888888885 6999999999999999987654

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.46  E-value=1.3e-06  Score=67.24  Aligned_cols=101  Identities=20%  Similarity=0.205  Sum_probs=66.1

Q ss_pred             CCCch-hhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHH
Q 043745           26 TAGQE-RYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAER  104 (174)
Q Consensus        26 ~~G~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  104 (174)
                      .|||- .........++.+|++++|+|+.++.+...  .++..+.    .+.|+|+|.||+|+.+...  .....+....
T Consensus         4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~   75 (276)
T TIGR03596         4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR----GNKPRLIVLNKADLADPAV--TKQWLKYFEE   75 (276)
T ss_pred             ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH----CCCCEEEEEEccccCCHHH--HHHHHHHHHH
Confidence            35554 233456677889999999999977644322  1112211    1579999999999954211  1122222333


Q ss_pred             hCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745          105 EGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus       105 ~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      .+.+++.+||+++.|++++.+.+.+.+...
T Consensus        76 ~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        76 KGIKALAINAKKGKGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence            566789999999999999998887776543

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=98.45  E-value=8.6e-07  Score=76.55  Aligned_cols=73  Identities=18%  Similarity=0.196  Sum_probs=54.7

Q ss_pred             EEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745           12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus        12 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      +.+++..+.++||||||+.+|.......+..+|++++|+|+.+.-..+....| .....   .+.|+++++||+|..
T Consensus        79 ~~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~  151 (720)
T TIGR00490        79 HEYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQALK---ENVKPVLFINKVDRL  151 (720)
T ss_pred             EeecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHHH---cCCCEEEEEEChhcc
Confidence            34677789999999999999988888899999999999999874222222222 22222   257888999999985

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.44  E-value=4.1e-06  Score=63.04  Aligned_cols=118  Identities=16%  Similarity=0.205  Sum_probs=75.8

Q ss_pred             eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChh-------hHHHHHH---HHHHHHhhc-CCCCeEEEEEeCC
Q 043745           17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPT-------TFENVSR---WLKELRDHA-DSNIVIMMIGNKT   85 (174)
Q Consensus        17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-------s~~~~~~---~~~~i~~~~-~~~~piilv~nK~   85 (174)
                      ..+.++++|++||.+-+..|-+++.+..++|||..+++..       +-+++.+   ++..+.+.. ...+.+|++.||.
T Consensus       200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq  279 (379)
T KOG0099|consen  200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ  279 (379)
T ss_pred             cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence            3477999999999999999999999999999999887521       2222322   222222211 1357899999999


Q ss_pred             CCCCcc------------------------------CCCHHHHHHHHHHh-------------CCcEEEEeccCCCCHHH
Q 043745           86 DLKHLR------------------------------AVATEDAQSYAERE-------------GLSFIETSALEAINVEK  122 (174)
Q Consensus        86 Dl~~~~------------------------------~~~~~~~~~~~~~~-------------~~~~~~~Sa~~~~~i~~  122 (174)
                      |+..++                              ....-.++.+.+..             -+-+++++|.+.++|..
T Consensus       280 DllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrr  359 (379)
T KOG0099|consen  280 DLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR  359 (379)
T ss_pred             HHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHH
Confidence            972110                              00001111122111             12356788999999999


Q ss_pred             HHHHHHHHHHHH
Q 043745          123 AFQTILSEIYRI  134 (174)
Q Consensus       123 v~~~l~~~i~~~  134 (174)
                      +|+.....|.+.
T Consensus       360 VFnDcrdiIqr~  371 (379)
T KOG0099|consen  360 VFNDCRDIIQRM  371 (379)
T ss_pred             HHHHHHHHHHHH
Confidence            999887766554

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.43  E-value=9.9e-07  Score=68.04  Aligned_cols=113  Identities=21%  Similarity=0.186  Sum_probs=74.6

Q ss_pred             EEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC--CCHHH
Q 043745           20 KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA--VATED   97 (174)
Q Consensus        20 ~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~--~~~~~   97 (174)
                      ++.|+|.|||+-.-...-.-..=.|+.++|+.+..+=.=-+..+.+-.+.-. + -..+|++.||+||-....  -..++
T Consensus        87 ~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi-g-ik~iiIvQNKIDlV~~E~AlE~y~q  164 (415)
T COG5257          87 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII-G-IKNIIIVQNKIDLVSRERALENYEQ  164 (415)
T ss_pred             EEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh-c-cceEEEEecccceecHHHHHHHHHH
Confidence            5789999999975544333333469999999987631111112222222222 2 356899999999965321  23456


Q ss_pred             HHHHHHHh---CCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           98 AQSYAERE---GLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        98 ~~~~~~~~---~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      +++|.+..   +.+++++||..+.|++-+++.+.+.|...
T Consensus       165 Ik~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP  204 (415)
T COG5257         165 IKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP  204 (415)
T ss_pred             HHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence            67776654   46899999999999999999887776543

>PRK01889 GTPase RsgA; Reviewed

Probab=98.43  E-value=1.3e-06  Score=69.45  Aligned_cols=83  Identities=13%  Similarity=0.159  Sum_probs=59.9

Q ss_pred             hccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHH-HhCCcEEEEeccCCC
Q 043745           40 YRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAE-REGLSFIETSALEAI  118 (174)
Q Consensus        40 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  118 (174)
                      ..++|.+++|+++...-....+..++..+...   +++.+||.||+||.+..   .+..+.+.. ..+++++.+|++++.
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g~  183 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDGE  183 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCCc
Confidence            57899999999997555555667776665543   57778899999997531   112222222 346899999999999


Q ss_pred             CHHHHHHHHH
Q 043745          119 NVEKAFQTIL  128 (174)
Q Consensus       119 ~i~~v~~~l~  128 (174)
                      |++++..++.
T Consensus       184 gl~~L~~~L~  193 (356)
T PRK01889        184 GLDVLAAWLS  193 (356)
T ss_pred             cHHHHHHHhh
Confidence            9999888764

>cd01850 CDC_Septin CDC/Septin

Probab=98.41  E-value=2.8e-06  Score=65.33  Aligned_cols=99  Identities=13%  Similarity=0.139  Sum_probs=59.7

Q ss_pred             EEEECCeEEEEEEEeCCCchhhh--------------------------hhhHHhhc--cCCEEEEEEeCCChhhHHHH-
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYR--------------------------AITSAYYR--GALGALLVYDVTKPTTFENV-   61 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~--------------------------~~~~~~~~--~~d~ii~v~d~~~~~s~~~~-   61 (174)
                      .+..+|..+.+.||||||..++.                          ..+...+.  ++|+++|+++.+.. .+... 
T Consensus        55 ~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D  133 (276)
T cd01850          55 EIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLD  133 (276)
T ss_pred             EEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHH
Confidence            34457777899999999943221                          01112333  46788888887642 11111 


Q ss_pred             HHHHHHHHhhcCCCCeEEEEEeCCCCCCcc--CCCHHHHHHHHHHhCCcEEEEec
Q 043745           62 SRWLKELRDHADSNIVIMMIGNKTDLKHLR--AVATEDAQSYAEREGLSFIETSA  114 (174)
Q Consensus        62 ~~~~~~i~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~Sa  114 (174)
                      ...+..+.   . .+|+++|+||+|+....  ....+..++.+...+++++....
T Consensus       134 ~~~lk~l~---~-~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~  184 (276)
T cd01850         134 IEFMKRLS---K-RVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPE  184 (276)
T ss_pred             HHHHHHHh---c-cCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCC
Confidence            22333332   2 58999999999985422  23345566777788888887654

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK00007 elongation factor G; Reviewed

Probab=98.40  E-value=3.1e-06  Score=72.86  Aligned_cols=95  Identities=17%  Similarity=0.194  Sum_probs=63.8

Q ss_pred             eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHH
Q 043745           17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATE   96 (174)
Q Consensus        17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~   96 (174)
                      ....++|+||||+.+|.......+..+|++++|+|+...-..+....| ..+...   ++|+|+++||+|+.+..  ...
T Consensus        73 ~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~-~~~~~~---~~p~iv~vNK~D~~~~~--~~~  146 (693)
T PRK00007         73 KDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVW-RQADKY---KVPRIAFVNKMDRTGAD--FYR  146 (693)
T ss_pred             CCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHH-HHHHHc---CCCEEEEEECCCCCCCC--HHH
Confidence            346789999999998877777788999999999998865433332222 333332   57899999999997532  233


Q ss_pred             HHHHHHHHhCC----cEEEEeccCC
Q 043745           97 DAQSYAEREGL----SFIETSALEA  117 (174)
Q Consensus        97 ~~~~~~~~~~~----~~~~~Sa~~~  117 (174)
                      ..+++.+.++.    ..+++|+..+
T Consensus       147 ~~~~i~~~l~~~~~~~~ipisa~~~  171 (693)
T PRK00007        147 VVEQIKDRLGANPVPIQLPIGAEDD  171 (693)
T ss_pred             HHHHHHHHhCCCeeeEEecCccCCc
Confidence            34444455543    2445555544

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.39  E-value=2.5e-06  Score=66.57  Aligned_cols=102  Identities=28%  Similarity=0.246  Sum_probs=68.8

Q ss_pred             eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCC--
Q 043745           17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVA--   94 (174)
Q Consensus        17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~--   94 (174)
                      .+-.+.+-|||||+.|....-.-..-||+.|+++|+-.. -++..++. ..|....+ =..+++..||+||.+-.+--  
T Consensus        84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G-vl~QTrRH-s~I~sLLG-IrhvvvAVNKmDLvdy~e~~F~  160 (431)
T COG2895          84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG-VLEQTRRH-SFIASLLG-IRHVVVAVNKMDLVDYSEEVFE  160 (431)
T ss_pred             ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh-hHHHhHHH-HHHHHHhC-CcEEEEEEeeecccccCHHHHH
Confidence            344689999999999988776666789999999998432 12222221 11222222 25688889999997633211  


Q ss_pred             --HHHHHHHHHHhCC---cEEEEeccCCCCHH
Q 043745           95 --TEDAQSYAEREGL---SFIETSALEAINVE  121 (174)
Q Consensus        95 --~~~~~~~~~~~~~---~~~~~Sa~~~~~i~  121 (174)
                        ..+-..|+.++++   .++++||..|.|+-
T Consensus       161 ~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         161 AIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence              2345677888875   58999999998854

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=98.37  E-value=4.6e-06  Score=55.54  Aligned_cols=64  Identities=23%  Similarity=0.312  Sum_probs=40.9

Q ss_pred             EECCeEEEEEEEeCCCchh----------hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEE
Q 043745           13 QVEGRTIKAQIWDTAGQER----------YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIG   82 (174)
Q Consensus        13 ~~~~~~~~l~l~D~~G~~~----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~   82 (174)
                      .+++..  +.|+||||...          +...... +..+|++++|+|+++... +....++..+.    ...|+++|.
T Consensus        43 ~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~-~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~  114 (116)
T PF01926_consen   43 EYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQ-ISKSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVL  114 (116)
T ss_dssp             EETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHH-HCTESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEE
T ss_pred             eeceee--EEEEeCCCCcccchhhHHHHHHHHHHHH-HHHCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEE
Confidence            345544  47999999642          1123333 478999999999877321 22333444442    368999999


Q ss_pred             eC
Q 043745           83 NK   84 (174)
Q Consensus        83 nK   84 (174)
                      ||
T Consensus       115 NK  116 (116)
T PF01926_consen  115 NK  116 (116)
T ss_dssp             ES
T ss_pred             cC
Confidence            98

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.37  E-value=2.9e-06  Score=65.63  Aligned_cols=101  Identities=20%  Similarity=0.189  Sum_probs=66.8

Q ss_pred             CCCchh-hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHH
Q 043745           26 TAGQER-YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAER  104 (174)
Q Consensus        26 ~~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  104 (174)
                      .|||-. -.......++.+|++++|+|+.++.+...  .++..+.   . +.|+++|.||+|+.+...  .+...++...
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~-~kp~iiVlNK~DL~~~~~--~~~~~~~~~~   78 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---G-NKPRLLILNKSDLADPEV--TKKWIEYFEE   78 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---C-CCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence            466542 23455667889999999999977644322  1222221   1 579999999999954211  1222222334


Q ss_pred             hCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745          105 EGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus       105 ~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      .+.+++.+||+++.|++++++.+...+...
T Consensus        79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         79 QGIKALAINAKKGQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            467789999999999999999888776554

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=98.36  E-value=8.5e-06  Score=59.40  Aligned_cols=111  Identities=15%  Similarity=0.110  Sum_probs=60.5

Q ss_pred             EEEEEEeCCCchhhh-------h-h---hHHhhccCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcC--CCCeEEEEEeC
Q 043745           19 IKAQIWDTAGQERYR-------A-I---TSAYYRGALGALLVYDVTKP-TTFENVSRWLKELRDHAD--SNIVIMMIGNK   84 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~-------~-~---~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~piilv~nK   84 (174)
                      ..+.|+||||..+..       . +   ......+.|+++||+++.+. +....+   +..+....+  .-.+++++.|+
T Consensus        49 ~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~t~~d~~~---l~~l~~~fg~~~~~~~ivv~T~  125 (196)
T cd01852          49 RRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRFTEEEEQA---VETLQELFGEKVLDHTIVLFTR  125 (196)
T ss_pred             eEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCcCHHHHHH---HHHHHHHhChHhHhcEEEEEEC
Confidence            468999999965331       1 1   12224578999999998872 122222   333333222  12578888999


Q ss_pred             CCCCCccCCC------HHHHHHHHHHhCCcEEEEecc-----CCCCHHHHHHHHHHHHH
Q 043745           85 TDLKHLRAVA------TEDAQSYAEREGLSFIETSAL-----EAINVEKAFQTILSEIY  132 (174)
Q Consensus        85 ~Dl~~~~~~~------~~~~~~~~~~~~~~~~~~Sa~-----~~~~i~~v~~~l~~~i~  132 (174)
                      .|......+.      ...++.+.+.-+-.++..+..     .+.++.++++.+.+.+.
T Consensus       126 ~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~  184 (196)
T cd01852         126 GDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESMVK  184 (196)
T ss_pred             ccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHH
Confidence            9864422111      134455555555555444433     34455555555544443

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.35  E-value=5.8e-06  Score=60.88  Aligned_cols=101  Identities=16%  Similarity=0.112  Sum_probs=61.8

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHH
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDA   98 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~   98 (174)
                      ..+.|.|+.|.-....   .+.-..+..+.|+|+.+.+...     ......   ...|.++++||+|+.+.......+.
T Consensus       103 ~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~-----~~~~~~---~~~a~iiv~NK~Dl~~~~~~~~~~~  171 (207)
T TIGR00073       103 IDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKP-----LKYPGM---FKEADLIVINKADLAEAVGFDVEKM  171 (207)
T ss_pred             CCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchh-----hhhHhH---HhhCCEEEEEHHHccccchhhHHHH
Confidence            3567788877211111   1112345666788887643211     111111   1357899999999975322223445


Q ss_pred             HHHHHHhC--CcEEEEeccCCCCHHHHHHHHHHH
Q 043745           99 QSYAEREG--LSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        99 ~~~~~~~~--~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      .+..++.+  .+++++||+++.|++++|+++.+.
T Consensus       172 ~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       172 KADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            44455544  789999999999999999999875

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.35  E-value=9.4e-07  Score=65.38  Aligned_cols=135  Identities=15%  Similarity=0.195  Sum_probs=95.5

Q ss_pred             CCCCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChh----------hHHHHHHHHHHHHhh
Q 043745            2 GQPRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPT----------TFENVSRWLKELRDH   71 (174)
Q Consensus         2 g~pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~----------s~~~~~~~~~~i~~~   71 (174)
                      ..||+|.. ++.++-..+.+.+.|++|+...+..|-.++++.-.++|++..+..+          ..++-+..+..|..+
T Consensus       183 RvPTTGi~-eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~y  261 (359)
T KOG0085|consen  183 RVPTTGII-EYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITY  261 (359)
T ss_pred             ecCcccce-ecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhcc
Confidence            46888866 4677777888999999999999999999999999999987766432          122222233344333


Q ss_pred             cC-CCCeEEEEEeCCCCCCc----------------cCCCHHHHHHHHHHh----C------CcEEEEeccCCCCHHHHH
Q 043745           72 AD-SNIVIMMIGNKTDLKHL----------------RAVATEDAQSYAERE----G------LSFIETSALEAINVEKAF  124 (174)
Q Consensus        72 ~~-~~~piilv~nK~Dl~~~----------------~~~~~~~~~~~~~~~----~------~~~~~~Sa~~~~~i~~v~  124 (174)
                      .= .+.++|++.||.|+.++                ...+.+.+++|.-++    +      +--++++|.+.+||.-+|
T Consensus       262 PWF~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVF  341 (359)
T KOG0085|consen  262 PWFQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVF  341 (359)
T ss_pred             ccccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHH
Confidence            22 57899999999998432                122334455554433    1      234578899999999999


Q ss_pred             HHHHHHHHHHHhh
Q 043745          125 QTILSEIYRIISK  137 (174)
Q Consensus       125 ~~l~~~i~~~~~~  137 (174)
                      .++...++++..+
T Consensus       342 aaVkDtiLq~~Lk  354 (359)
T KOG0085|consen  342 AAVKDTILQLNLK  354 (359)
T ss_pred             HHHHHHHHHhhhH
Confidence            9999999887544

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.29  E-value=8.9e-06  Score=64.00  Aligned_cols=109  Identities=15%  Similarity=0.098  Sum_probs=69.2

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC--CH
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV--AT   95 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~   95 (174)
                      ++.+.|.||+|...-...   ....+|.++++.+....+.+..++.   .+.     +..-++|+||+|+.+....  ..
T Consensus       148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~-----E~aDIiVVNKaDl~~~~~a~~~~  216 (332)
T PRK09435        148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIM-----ELADLIVINKADGDNKTAARRAA  216 (332)
T ss_pred             CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhh-----hhhheEEeehhcccchhHHHHHH
Confidence            467899999997633222   3567999999977555544444321   121     2234788999998653211  11


Q ss_pred             HHHHHHHHH-------hCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q 043745           96 EDAQSYAER-------EGLSFIETSALEAINVEKAFQTILSEIYRIISK  137 (174)
Q Consensus        96 ~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~  137 (174)
                      .+.+.....       +..+++.+||+++.|++++++.+.+........
T Consensus       217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~s  265 (332)
T PRK09435        217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTAS  265 (332)
T ss_pred             HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccC
Confidence            222222221       124799999999999999999999877654433

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=98.29  E-value=3.6e-06  Score=56.19  Aligned_cols=80  Identities=25%  Similarity=0.246  Sum_probs=59.1

Q ss_pred             hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEE
Q 043745           32 YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIE  111 (174)
Q Consensus        32 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  111 (174)
                      +......+++.++.++++|+.++.+++..+  |...+....+.+.|+++++||.|+.+...+..++...+        ++
T Consensus        36 ~~~~~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~~~--------~~  105 (124)
T smart00010       36 IDVYDPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGLEF--------AE  105 (124)
T ss_pred             hhhccccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHHHH--------HH
Confidence            444556678899999999999999998766  87777665555789999999999854334444444433        45


Q ss_pred             EeccCCCCHH
Q 043745          112 TSALEAINVE  121 (174)
Q Consensus       112 ~Sa~~~~~i~  121 (174)
                      +|++++.|+.
T Consensus       106 ~s~~~~~~~~  115 (124)
T smart00010      106 TSAKTPEEGE  115 (124)
T ss_pred             HhCCCcchhh
Confidence            7888888874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.28  E-value=9.6e-06  Score=66.59  Aligned_cols=126  Identities=19%  Similarity=0.355  Sum_probs=97.2

Q ss_pred             ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCC
Q 043745            8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTD   86 (174)
Q Consensus         8 ~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~D   86 (174)
                      +.+++.++++...+.+.|.+|..     -.+|-..+|++||||.+.+.++|+.++.+...+..+.. ..+|+++++++.-
T Consensus        66 ~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~  140 (749)
T KOG0705|consen   66 FKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDH  140 (749)
T ss_pred             ceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcch
Confidence            77788899999999999998844     34566789999999999999999998776665543332 4688888888765


Q ss_pred             CCC--ccCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q 043745           87 LKH--LRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEIYRIISKK  138 (174)
Q Consensus        87 l~~--~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~  138 (174)
                      ...  .+.+...+...++.++. +.+|+++|.+|.+++.+|+.+..++.......
T Consensus       141 iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~~~~k~i~~~~~q  195 (749)
T KOG0705|consen  141 ISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQEVAQKIVQLRKYQ  195 (749)
T ss_pred             hhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHHHHHHHHHHHhhh
Confidence            432  34455566666665554 78999999999999999999999888875443

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.25  E-value=8.1e-06  Score=62.82  Aligned_cols=97  Identities=18%  Similarity=0.158  Sum_probs=70.8

Q ss_pred             hhhhhhHHhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcE
Q 043745           31 RYRAITSAYYRGALGALLVYDVTKPT-TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSF  109 (174)
Q Consensus        31 ~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  109 (174)
                      +...+.+..+.+.|-.++++++.+++ +...+.+++-.....   ++..+|+.||+||.+......++.......+|+++
T Consensus        68 Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v  144 (301)
T COG1162          68 RKNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPV  144 (301)
T ss_pred             ccCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeE
Confidence            33445556666788888999888875 566667766555443   56677779999998644332245666777889999


Q ss_pred             EEEeccCCCCHHHHHHHHHHH
Q 043745          110 IETSALEAINVEKAFQTILSE  130 (174)
Q Consensus       110 ~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      +.+|++++.+++++...+...
T Consensus       145 ~~~s~~~~~~~~~l~~~l~~~  165 (301)
T COG1162         145 LFVSAKNGDGLEELAELLAGK  165 (301)
T ss_pred             EEecCcCcccHHHHHHHhcCC
Confidence            999999999999988877554

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.25  E-value=2e-06  Score=64.71  Aligned_cols=111  Identities=20%  Similarity=0.149  Sum_probs=56.9

Q ss_pred             EEEEEeCCCchhhhhhhHHhh--------ccCCEEEEEEeCCChhhHH-HHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           20 KAQIWDTAGQERYRAITSAYY--------RGALGALLVYDVTKPTTFE-NVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        20 ~l~l~D~~G~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      .+.++|||||.++...|...-        ...-++++++|..-..+-. .+..++..+......+.|.|.|.||+|+.+.
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            578999999988765554443        4456899999987443211 2223333322211137999999999999752


Q ss_pred             c---CC----C------------HHHHHHHHH---HhC-C-cEEEEeccCCCCHHHHHHHHHHH
Q 043745           91 R---AV----A------------TEDAQSYAE---REG-L-SFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        91 ~---~~----~------------~~~~~~~~~---~~~-~-~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      .   ..    +            ....+++++   ..+ . .++.+|+.+++++++++..+-+.
T Consensus       172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a  235 (238)
T PF03029_consen  172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA  235 (238)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred             hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence            1   00    0            000111111   123 3 69999999999999998866543

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.24  E-value=2.4e-05  Score=62.72  Aligned_cols=110  Identities=15%  Similarity=0.013  Sum_probs=77.5

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHH
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDA   98 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~   98 (174)
                      ..+.|+|++|++++-+..-.-+...|..+||++.++.-..+... .+..+... + -...++|+||.|+.+... .++..
T Consensus        50 ~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgE-hL~iLdll-g-i~~giivltk~D~~d~~r-~e~~i  125 (447)
T COG3276          50 GVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGE-HLLILDLL-G-IKNGIIVLTKADRVDEAR-IEQKI  125 (447)
T ss_pred             CceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHH-HHHHHHhc-C-CCceEEEEeccccccHHH-HHHHH
Confidence            37899999999999887777778899999999997543322221 22222222 2 245688999999976432 23334


Q ss_pred             HHHHHHh---CCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           99 QSYAERE---GLSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        99 ~~~~~~~---~~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      +++...+   ..+++.+|+++++|++++-+.|....-
T Consensus       126 ~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~  162 (447)
T COG3276         126 KQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE  162 (447)
T ss_pred             HHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence            4444333   367899999999999999999988874

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.24  E-value=1.2e-05  Score=64.49  Aligned_cols=97  Identities=19%  Similarity=0.157  Sum_probs=67.8

Q ss_pred             ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745            8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL   87 (174)
Q Consensus         8 ~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl   87 (174)
                      .+..+.+++....++|.|||||++|..-.=..+..+|..+.|+|+...-.-+. .++++ +-+.  .++||+-++||.|.
T Consensus        70 tsSVMqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-~KLfe-Vcrl--R~iPI~TFiNKlDR  145 (528)
T COG4108          70 TSSVMQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-LKLFE-VCRL--RDIPIFTFINKLDR  145 (528)
T ss_pred             EeeEEEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHH-HHHHH-HHhh--cCCceEEEeecccc
Confidence            34466788888999999999999987766666778999999999986422222 12222 2222  37999999999998


Q ss_pred             CCccCCCHHHHHHHHHHhCCcEE
Q 043745           88 KHLRAVATEDAQSYAEREGLSFI  110 (174)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~  110 (174)
                      ....  ..+.+.++.+.+++...
T Consensus       146 ~~rd--P~ELLdEiE~~L~i~~~  166 (528)
T COG4108         146 EGRD--PLELLDEIEEELGIQCA  166 (528)
T ss_pred             ccCC--hHHHHHHHHHHhCccee
Confidence            7633  34556666666665433

>PRK07560 elongation factor EF-2; Reviewed

Probab=98.13  E-value=1.2e-05  Score=69.76  Aligned_cols=71  Identities=18%  Similarity=0.222  Sum_probs=53.1

Q ss_pred             ECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745           14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus        14 ~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      +++....++|+||||+.+|.......+..+|++++|+|+...-.......| ......   +.|+|+++||+|+.
T Consensus        82 ~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~-~~~~~~---~~~~iv~iNK~D~~  152 (731)
T PRK07560         82 YEGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVL-RQALRE---RVKPVLFINKVDRL  152 (731)
T ss_pred             ecCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHH-HHHHHc---CCCeEEEEECchhh
Confidence            355678899999999999988888889999999999999875332222233 222222   46788999999975

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=98.13  E-value=1.9e-05  Score=65.17  Aligned_cols=114  Identities=21%  Similarity=0.197  Sum_probs=75.7

Q ss_pred             ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChh---hHH---HHHHHHHHHHhhcCCCCeEEEE
Q 043745            8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPT---TFE---NVSRWLKELRDHADSNIVIMMI   81 (174)
Q Consensus         8 ~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~piilv   81 (174)
                      ..+...++.....+.|.|.|||.+|....-.-...||+.++|+|++-.+   .|+   .+++....++...  -..+|++
T Consensus       244 ~v~~~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qliva  321 (603)
T KOG0458|consen  244 DVKTTWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVA  321 (603)
T ss_pred             EeeeEEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEE
Confidence            3445567788888999999999999887766677899999999997532   122   2334333333332  2458888


Q ss_pred             EeCCCCCCccC----CCHHHHHHHH-HHhC-----CcEEEEeccCCCCHHHH
Q 043745           82 GNKTDLKHLRA----VATEDAQSYA-EREG-----LSFIETSALEAINVEKA  123 (174)
Q Consensus        82 ~nK~Dl~~~~~----~~~~~~~~~~-~~~~-----~~~~~~Sa~~~~~i~~v  123 (174)
                      +||+|+-+=.+    .....+..|. +..|     +.|+++|+.+|+|+-..
T Consensus       322 iNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  322 INKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             eecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            99999854111    1122334444 3333     57999999999986544

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=98.12  E-value=2.2e-05  Score=58.19  Aligned_cols=70  Identities=21%  Similarity=0.402  Sum_probs=52.7

Q ss_pred             EEEEEEeCCCchhhh-----hhhHHhhccCCEEEEEEeCCChhhHHHH---HHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           19 IKAQIWDTAGQERYR-----AITSAYYRGALGALLVYDVTKPTTFENV---SRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~-----~~~~~~~~~~d~ii~v~d~~~~~s~~~~---~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      +.+++||.+|++.+-     ......+++.+++|+|||++..+-..++   ..-++.+.++.+ +..+.+..+|+||..
T Consensus        53 l~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP-~AkiF~l~hKmDLv~  130 (295)
T KOG3886|consen   53 LVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSP-EAKIFCLLHKMDLVQ  130 (295)
T ss_pred             heeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCC-cceEEEEEeechhcc
Confidence            568999999999553     2456778999999999999987544444   344555656554 788999999999964

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=98.12  E-value=9.8e-06  Score=71.22  Aligned_cols=68  Identities=19%  Similarity=0.195  Sum_probs=52.7

Q ss_pred             eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745           17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus        17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      ..+.++|+||||+.+|.......+..+|++|+|+|+.+.-......-| ..+..   .++|+++++||+|+.
T Consensus        96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~-~~~~~---~~~p~i~~iNK~D~~  163 (843)
T PLN00116         96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC  163 (843)
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH-HHHHH---CCCCEEEEEECCccc
Confidence            367889999999999988888888999999999999875333322223 33332   368999999999986

>COG3596 Predicted GTPase [General function prediction only]

Probab=98.05  E-value=2.1e-05  Score=59.60  Aligned_cols=112  Identities=10%  Similarity=0.138  Sum_probs=75.1

Q ss_pred             EEEEEEeCCCchh-------hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc-
Q 043745           19 IKAQIWDTAGQER-------YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL-   90 (174)
Q Consensus        19 ~~l~l~D~~G~~~-------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~-   90 (174)
                      -.+.|||+||-.+       |+.....++...|.++.+.+..|+.---+ .++++.+..... +.++++++|+.|.... 
T Consensus        87 ~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~~-~~~~i~~VtQ~D~a~p~  164 (296)
T COG3596          87 ENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTD-EDFLRDVIILGL-DKRVLFVVTQADRAEPG  164 (296)
T ss_pred             cceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCC-HHHHHHHHHhcc-CceeEEEEehhhhhccc
Confidence            4589999999654       77778888899999999999988631111 233444444332 4799999999997432 


Q ss_pred             ------cCCCHHHHHHHHHH----h------CCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           91 ------RAVATEDAQSYAER----E------GLSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        91 ------~~~~~~~~~~~~~~----~------~~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                            .......++++.++    .      -.+++..++..+-|++.+...++..+.
T Consensus       165 ~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp  222 (296)
T COG3596         165 REWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALP  222 (296)
T ss_pred             cccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence                  11111222222211    1      147888888999999999999888876

>PTZ00416 elongation factor 2; Provisional

Probab=98.04  E-value=1.5e-05  Score=70.06  Aligned_cols=67  Identities=21%  Similarity=0.247  Sum_probs=52.1

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      ...++|+||||+.+|.......++.+|++|+|+|+.+.-..... ..+..+..   .++|+|+++||+|+.
T Consensus        91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~---~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQ---ERIRPVLFINKVDRA  157 (836)
T ss_pred             ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHH---cCCCEEEEEEChhhh
Confidence            57799999999999988888889999999999999875332222 22333333   258999999999986

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.02  E-value=3.2e-05  Score=60.24  Aligned_cols=104  Identities=16%  Similarity=0.063  Sum_probs=64.3

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCH--
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVAT--   95 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~--   95 (174)
                      ++.+.|.||+|.....   ...+..+|.++++-....   -+++......+     .+.|.++++||+|+........  
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~---~~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~  194 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGT---GDDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR  194 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCc---cHHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence            4678999999854222   224667888888854433   33333333323     2467799999999975321110  


Q ss_pred             HH----HHHHHHH---hCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           96 ED----AQSYAER---EGLSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        96 ~~----~~~~~~~---~~~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      ..    ...+...   +..+++.+||+++.|++++++++.+...
T Consensus       195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            00    0111111   1236899999999999999999988744

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=98.02  E-value=4.6e-05  Score=63.03  Aligned_cols=115  Identities=19%  Similarity=0.220  Sum_probs=78.9

Q ss_pred             CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCH
Q 043745           16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVAT   95 (174)
Q Consensus        16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~   95 (174)
                      |..-.+.+-|.+-. ...-+...- ..+|++.++||.+++.+|..+...++.-...  ...|+++|++|.|+.+..+...
T Consensus       471 g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~  546 (625)
T KOG1707|consen  471 GQQKYLILREIGED-DQDFLTSKE-AACDVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYS  546 (625)
T ss_pred             cccceEEEeecCcc-ccccccCcc-ceeeeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccC
Confidence            44455666665543 222222222 6799999999999999999886665543333  4799999999999987654434


Q ss_pred             HHHHHHHHHhCCc-EEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745           96 EDAQSYAEREGLS-FIETSALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus        96 ~~~~~~~~~~~~~-~~~~Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                      -...+++.+++++ .+.+|.++.-. .++|.+|+..+.-..
T Consensus       547 iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~kL~~~A~~Ph  586 (625)
T KOG1707|consen  547 IQPDEFCRQLGLPPPIHISSKTLSS-NELFIKLATMAQYPH  586 (625)
T ss_pred             CChHHHHHhcCCCCCeeeccCCCCC-chHHHHHHHhhhCCC
Confidence            3448999999975 45566665333 788888887765544

>PTZ00258 GTP-binding protein; Provisional

Probab=97.95  E-value=7.9e-05  Score=59.86  Aligned_cols=44  Identities=14%  Similarity=0.080  Sum_probs=30.1

Q ss_pred             CCeEEEEEeCC--CCCCccCCCHHHHHHHHHHh-CCcEEEEeccCCC
Q 043745           75 NIVIMMIGNKT--DLKHLRAVATEDAQSYAERE-GLSFIETSALEAI  118 (174)
Q Consensus        75 ~~piilv~nK~--Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~  118 (174)
                      .+|+++|+|+.  |+.....-..+++++++... +.+++.+||+-..
T Consensus       220 ~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~~~~~v~~sa~~E~  266 (390)
T PTZ00258        220 AKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGEKGGGPIIPYSAEFEE  266 (390)
T ss_pred             cCCEEEEEECchhhhcccchHHHHHHHHHHHhcCCCeEEEeeHHHHH
Confidence            48999999999  86221122345666777677 4889999986443

>cd01882 BMS1 Bms1

Probab=97.93  E-value=0.00016  Score=53.93  Aligned_cols=95  Identities=15%  Similarity=0.120  Sum_probs=56.1

Q ss_pred             eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCCCccC-CC
Q 043745           17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIV-IMMIGNKTDLKHLRA-VA   94 (174)
Q Consensus        17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~-~~   94 (174)
                      ...++.|+||+|..  ..+. ...+.+|++++++|.+....... ..++..+...   +.| +++|+||+|+.+... ..
T Consensus        81 ~~~~i~~vDtPg~~--~~~l-~~ak~aDvVllviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~  153 (225)
T cd01882          81 KKRRLTFIECPNDI--NAMI-DIAKVADLVLLLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLR  153 (225)
T ss_pred             CCceEEEEeCCchH--HHHH-HHHHhcCEEEEEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHH
Confidence            44567899999854  3333 34588999999999976433222 2233333332   456 455999999863221 10


Q ss_pred             --HHHHHH-HHHHh--CCcEEEEeccCCC
Q 043745           95 --TEDAQS-YAERE--GLSFIETSALEAI  118 (174)
Q Consensus        95 --~~~~~~-~~~~~--~~~~~~~Sa~~~~  118 (174)
                        ..+++. +....  +.+++.+||+++.
T Consensus       154 ~~~~~l~~~~~~~~~~~~ki~~iSa~~~~  182 (225)
T cd01882         154 KTKKRLKHRFWTEVYQGAKLFYLSGIVHG  182 (225)
T ss_pred             HHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence              112222 22222  3689999999874

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=97.91  E-value=9.5e-05  Score=63.45  Aligned_cols=68  Identities=18%  Similarity=0.222  Sum_probs=53.7

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      .++++|+|||||-+|.......++-+|++++|+|+...-..+.-.-|. +...   .++|.++++||+|...
T Consensus        75 ~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~r-qa~~---~~vp~i~fiNKmDR~~  142 (697)
T COG0480          75 DYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWR-QADK---YGVPRILFVNKMDRLG  142 (697)
T ss_pred             ceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHH-HHhh---cCCCeEEEEECccccc
Confidence            588999999999999999999999999999999998753333323342 2222   4799999999999754

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=97.83  E-value=0.00014  Score=56.52  Aligned_cols=73  Identities=11%  Similarity=0.001  Sum_probs=41.5

Q ss_pred             EEEEEEEeCCCchhhhhh-------hHHhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCeEEEEEeCCC
Q 043745           18 TIKAQIWDTAGQERYRAI-------TSAYY--RGALGALLVYDVTKPTTFENVSRWLKELRDHAD--SNIVIMMIGNKTD   86 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~-------~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~D   86 (174)
                      +..+.+|||||..+....       ...++  .+.|+++||..++.......-...+..+....+  --.++|++.|+.|
T Consensus        85 G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d  164 (313)
T TIGR00991        85 GFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQ  164 (313)
T ss_pred             CeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCc
Confidence            357899999997754221       12222  268999999765532111111223333433322  1256899999999


Q ss_pred             CCCc
Q 043745           87 LKHL   90 (174)
Q Consensus        87 l~~~   90 (174)
                      ....
T Consensus       165 ~~~p  168 (313)
T TIGR00991       165 FSPP  168 (313)
T ss_pred             cCCC
Confidence            7643

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.78  E-value=0.00058  Score=53.65  Aligned_cols=115  Identities=19%  Similarity=0.151  Sum_probs=66.5

Q ss_pred             CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHH-HHHHHhhcCCCCeEEEEEeCCCCCCc--c
Q 043745           15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRW-LKELRDHADSNIVIMMIGNKTDLKHL--R   91 (174)
Q Consensus        15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~-~~~i~~~~~~~~piilv~nK~Dl~~~--~   91 (174)
                      .+..+++.|+|+|||...-..+-.-.+-.|..++|+|+...-.-+...-+ +.++.     -...++|+||+|+..+  +
T Consensus        66 q~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~-----c~klvvvinkid~lpE~qr  140 (522)
T KOG0461|consen   66 QGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL-----CKKLVVVINKIDVLPENQR  140 (522)
T ss_pred             ccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh-----ccceEEEEeccccccchhh
Confidence            34557889999999987655544444567899999999864322222211 11221     2346778899987543  2


Q ss_pred             CCCHHH-HHHHHHHh-------CCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           92 AVATED-AQSYAERE-------GLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        92 ~~~~~~-~~~~~~~~-------~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      .--.++ .+...+.+       +.+++++||+.|.--++.+..+.+.+..+
T Consensus       141 ~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~  191 (522)
T KOG0461|consen  141 ASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESR  191 (522)
T ss_pred             hhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHh
Confidence            211222 22222222       26899999999954444444444444443

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=97.77  E-value=0.00017  Score=55.42  Aligned_cols=93  Identities=19%  Similarity=0.164  Sum_probs=62.7

Q ss_pred             EEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-eEEEEEeCCCCCCccC---CCH
Q 043745           20 KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNI-VIMMIGNKTDLKHLRA---VAT   95 (174)
Q Consensus        20 ~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-piilv~nK~Dl~~~~~---~~~   95 (174)
                      .+-.+|+|||.+|-+..-.-..+.|+.|+|++++|.+--+..... ...++.   .+ .++++.||.|+-++.+   +-+
T Consensus        76 hyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi-Llarqv---Gvp~ivvflnK~Dmvdd~ellelVe  151 (394)
T COG0050          76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI-LLARQV---GVPYIVVFLNKVDMVDDEELLELVE  151 (394)
T ss_pred             eEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh-hhhhhc---CCcEEEEEEecccccCcHHHHHHHH
Confidence            467899999999988766666789999999999985322221111 111222   45 4777889999976432   234


Q ss_pred             HHHHHHHHHhCC-----cEEEEeccC
Q 043745           96 EDAQSYAEREGL-----SFIETSALE  116 (174)
Q Consensus        96 ~~~~~~~~~~~~-----~~~~~Sa~~  116 (174)
                      .+.+++...++.     |++.-||..
T Consensus       152 mEvreLLs~y~f~gd~~Pii~gSal~  177 (394)
T COG0050         152 MEVRELLSEYGFPGDDTPIIRGSALK  177 (394)
T ss_pred             HHHHHHHHHcCCCCCCcceeechhhh
Confidence            567788888864     677777653

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=97.76  E-value=6.8e-05  Score=63.07  Aligned_cols=69  Identities=26%  Similarity=0.386  Sum_probs=55.0

Q ss_pred             CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745           15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL   87 (174)
Q Consensus        15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl   87 (174)
                      .++..-+++.|||||-.|-......++-+|++++++|+.+.-.++.- ..   |++....+.|+.+|+||.|+
T Consensus       193 ~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~---ikhaiq~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  193 KGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RI---IKHAIQNRLPIVVVINKVDR  261 (971)
T ss_pred             cCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HH---HHHHHhccCcEEEEEehhHH
Confidence            67777899999999999998888889999999999999876555432 22   23333347899999999995

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=97.75  E-value=0.00066  Score=54.03  Aligned_cols=102  Identities=17%  Similarity=0.144  Sum_probs=65.3

Q ss_pred             EEEEEeCCCchhhhh--hhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC--CH
Q 043745           20 KAQIWDTAGQERYRA--ITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV--AT   95 (174)
Q Consensus        20 ~l~l~D~~G~~~~~~--~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~   95 (174)
                      .+.|+||.||+.|-.  ++-.+=+..|-.++++-+++..+--. ++.+-....   .++|+|++.||+|+.++..+  ..
T Consensus       202 lVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~~a---~~lPviVvvTK~D~~~ddr~~~v~  277 (527)
T COG5258         202 LVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIALA---MELPVIVVVTKIDMVPDDRFQGVV  277 (527)
T ss_pred             EEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhhhh---hcCCEEEEEEecccCcHHHHHHHH
Confidence            478999999999854  34444568899999999988643221 222222222   37999999999998543111  01


Q ss_pred             HHHHHH----------------------HHHhC---CcEEEEeccCCCCHHHHHH
Q 043745           96 EDAQSY----------------------AEREG---LSFIETSALEAINVEKAFQ  125 (174)
Q Consensus        96 ~~~~~~----------------------~~~~~---~~~~~~Sa~~~~~i~~v~~  125 (174)
                      +++..+                      +.+.+   +|++.+|+-+|+|++-+.+
T Consensus       278 ~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e  332 (527)
T COG5258         278 EEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDE  332 (527)
T ss_pred             HHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHH
Confidence            111111                      22222   5899999999999875444

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=97.70  E-value=0.00058  Score=52.09  Aligned_cols=115  Identities=17%  Similarity=0.183  Sum_probs=63.9

Q ss_pred             EEEEEEEeCCCchh-h-----hhhhHHhhc--cCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 043745           18 TIKAQIWDTAGQER-Y-----RAITSAYYR--GALGALLVYDVTKP---TTFENVSRWLKELRDHADSNIVIMMIGNKTD   86 (174)
Q Consensus        18 ~~~l~l~D~~G~~~-~-----~~~~~~~~~--~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piilv~nK~D   86 (174)
                      .+...++|||||-. |     ...+...+.  ..-++++++|....   -.|=.=.-+.-.|.-  ...+|+|++.||+|
T Consensus       115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSily--ktklp~ivvfNK~D  192 (366)
T KOG1532|consen  115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILY--KTKLPFIVVFNKTD  192 (366)
T ss_pred             ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHH--hccCCeEEEEeccc
Confidence            45688999999853 2     223333333  23466667775432   222111111111221  13799999999999


Q ss_pred             CCCcc----CCC-HHHHHHHHH-------------------H--hCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           87 LKHLR----AVA-TEDAQSYAE-------------------R--EGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        87 l~~~~----~~~-~~~~~~~~~-------------------~--~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      +.+..    ... .+..++-..                   +  .++..+-+|+.+|.|.+++|..+-..+-..
T Consensus       193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy  266 (366)
T KOG1532|consen  193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY  266 (366)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence            96531    000 011111111                   1  135688999999999999999887665443

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.68  E-value=0.00024  Score=41.05  Aligned_cols=43  Identities=23%  Similarity=0.297  Sum_probs=28.5

Q ss_pred             CCEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 043745           43 ALGALLVYDVTKP--TTFENVSRWLKELRDHADSNIVIMMIGNKTD   86 (174)
Q Consensus        43 ~d~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piilv~nK~D   86 (174)
                      .++++|++|++..  .+.+.-...+..++..-. +.|+++|.||+|
T Consensus        14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D   58 (58)
T PF06858_consen   14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID   58 (58)
T ss_dssp             -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred             cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence            6899999999864  566666667777776654 799999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=97.68  E-value=0.0013  Score=51.39  Aligned_cols=116  Identities=19%  Similarity=0.370  Sum_probs=79.4

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhcc----CCEEEEEEeCCCh-hhHHHHHHHHHHHHhh----------------------
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRG----ALGALLVYDVTKP-TTFENVSRWLKELRDH----------------------   71 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~----~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~----------------------   71 (174)
                      .++.+|-.-|.-....+....+..    --.+||+.|++++ .-++.+.+|..-+.++                      
T Consensus       100 tr~~VWiLDGd~~h~~LLk~al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~w  179 (473)
T KOG3905|consen  100 TRCNVWILDGDLYHKGLLKFALPATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDW  179 (473)
T ss_pred             hhcceEEecCchhhhhHHhhcccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence            456777776765544444444332    2478999999998 4555666665533220                      


Q ss_pred             ---c------------------------------------CCCCeEEEEEeCCCC----CCccC-------CCHHHHHHH
Q 043745           72 ---A------------------------------------DSNIVIMMIGNKTDL----KHLRA-------VATEDAQSY  101 (174)
Q Consensus        72 ---~------------------------------------~~~~piilv~nK~Dl----~~~~~-------~~~~~~~~~  101 (174)
                         .                                    .-++|++||.+|+|+    ..+.+       .....++.|
T Consensus       180 QeYvep~e~~pgsp~~r~t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkF  259 (473)
T KOG3905|consen  180 QEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKF  259 (473)
T ss_pred             HHhcCccccCCCCcccccccccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHH
Confidence               0                                    024899999999997    22211       122446888


Q ss_pred             HHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745          102 AEREGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus       102 ~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      +-++|...+.+|++...|++-+...|.+.++..
T Consensus       260 CLr~GaaLiyTSvKE~KNidllyKYivhr~yG~  292 (473)
T KOG3905|consen  260 CLRYGAALIYTSVKETKNIDLLYKYIVHRSYGF  292 (473)
T ss_pred             HHHcCceeEEeecccccchHHHHHHHHHHhcCc
Confidence            889999999999999999999999999887653

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=97.63  E-value=0.00093  Score=55.08  Aligned_cols=117  Identities=21%  Similarity=0.371  Sum_probs=78.6

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhcc----CCEEEEEEeCCChhh-HHHHHHHHHHHHh----------------------
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRG----ALGALLVYDVTKPTT-FENVSRWLKELRD----------------------   70 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~----~d~ii~v~d~~~~~s-~~~~~~~~~~i~~----------------------   70 (174)
                      ..++.+|-..|...+..+....+..    --.+++|.|.+.+=. ++.+..|+..++.                      
T Consensus        72 ~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~  151 (472)
T PF05783_consen   72 LARLNVWELDGDPSHSDLLKFALTPENLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQ  151 (472)
T ss_pred             CceeeEEEcCCCcchHhHhcccCCcccccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            3578999998866666666554442    237889999998632 3334444432221                      


Q ss_pred             ---hc----------------------------C---------CCCeEEEEEeCCCCCC----cc-------CCCHHHHH
Q 043745           71 ---HA----------------------------D---------SNIVIMMIGNKTDLKH----LR-------AVATEDAQ   99 (174)
Q Consensus        71 ---~~----------------------------~---------~~~piilv~nK~Dl~~----~~-------~~~~~~~~   99 (174)
                         +.                            +         -++|++||++|.|.-.    ..       +...+-++
T Consensus       152 ~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR  231 (472)
T PF05783_consen  152 WQEYVEPGDSSDSGSPNRRSPSSSSSDDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLR  231 (472)
T ss_pred             HHHhhhccccccccCcccccccccccccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHH
Confidence               00                            0         1389999999999621    11       12234467


Q ss_pred             HHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745          100 SYAEREGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus       100 ~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      .++-.+|...+.+|++...+++.++..|.+.++..
T Consensus       232 ~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~~  266 (472)
T PF05783_consen  232 TFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYGF  266 (472)
T ss_pred             HHHHhcCCeEEEeeccccccHHHHHHHHHHHhccC
Confidence            78888899999999999999999998888877653

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.61  E-value=0.00033  Score=58.47  Aligned_cols=66  Identities=23%  Similarity=0.279  Sum_probs=51.4

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL   87 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl   87 (174)
                      ..+++++|||||-+|.-.....++-.|+.+++++....-.-+...-|. +..++   ++|-+.++||+|.
T Consensus       103 ~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~r-Q~~ry---~vP~i~FiNKmDR  168 (721)
T KOG0465|consen  103 DYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWR-QMKRY---NVPRICFINKMDR  168 (721)
T ss_pred             cceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHH-HHHhc---CCCeEEEEehhhh
Confidence            578999999999999888888889999999999987653333333453 33443   7999999999995

>smart00053 DYNc Dynamin, GTPase

Probab=97.55  E-value=0.00057  Score=51.54  Aligned_cols=68  Identities=13%  Similarity=0.122  Sum_probs=44.5

Q ss_pred             EEEEEEeCCCchh-------------hhhhhHHhhc-cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 043745           19 IKAQIWDTAGQER-------------YRAITSAYYR-GALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNK   84 (174)
Q Consensus        19 ~~l~l~D~~G~~~-------------~~~~~~~~~~-~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK   84 (174)
                      ..+.|+|+||...             ...+...|++ ..+++++|+|+...-.-....++...+..   ...|+++|+||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~---~~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP---QGERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH---cCCcEEEEEEC
Confidence            4689999999641             2235667788 45699999988653222222233333322   36899999999


Q ss_pred             CCCCC
Q 043745           85 TDLKH   89 (174)
Q Consensus        85 ~Dl~~   89 (174)
                      .|..+
T Consensus       202 ~D~~~  206 (240)
T smart00053      202 LDLMD  206 (240)
T ss_pred             CCCCC
Confidence            99875

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=97.53  E-value=0.00054  Score=51.97  Aligned_cols=70  Identities=14%  Similarity=0.108  Sum_probs=41.0

Q ss_pred             EEEEEEeCCCchhhhh---h-------hHHhhc--cCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCC--CCeEEEEEe
Q 043745           19 IKAQIWDTAGQERYRA---I-------TSAYYR--GALGALLVYDVTKPT-TFENVSRWLKELRDHADS--NIVIMMIGN   83 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~---~-------~~~~~~--~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~--~~piilv~n   83 (174)
                      ..+.||||||..+...   .       ...+++  ..|+++||..++... ...+ ...+..|....+.  -.++++|.|
T Consensus        79 ~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T  157 (249)
T cd01853          79 FKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLT  157 (249)
T ss_pred             eEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEe
Confidence            5689999999764411   1       223343  678888887666432 2221 2333444433221  257999999


Q ss_pred             CCCCCC
Q 043745           84 KTDLKH   89 (174)
Q Consensus        84 K~Dl~~   89 (174)
                      |.|...
T Consensus       158 ~~d~~~  163 (249)
T cd01853         158 HAASSP  163 (249)
T ss_pred             CCccCC
Confidence            999753

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=97.50  E-value=0.00026  Score=51.22  Aligned_cols=79  Identities=19%  Similarity=0.108  Sum_probs=55.2

Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHh-hcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhC--CcEEEEeccCCCCH
Q 043745           44 LGALLVYDVTKPTTFENVSRWLKELRD-HADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREG--LSFIETSALEAINV  120 (174)
Q Consensus        44 d~ii~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i  120 (174)
                      +.-|+|+|++..+..-         +. ....-..=++|+||.||.+.-..+.+...+-+++.+  .+++++|+++|+|+
T Consensus       119 ~~~v~VidvteGe~~P---------~K~gP~i~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~  189 (202)
T COG0378         119 HLRVVVIDVTEGEDIP---------RKGGPGIFKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGL  189 (202)
T ss_pred             ceEEEEEECCCCCCCc---------ccCCCceeEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCH
Confidence            3777888887654221         11 111011457888999998765566677777777764  79999999999999


Q ss_pred             HHHHHHHHHHH
Q 043745          121 EKAFQTILSEI  131 (174)
Q Consensus       121 ~~v~~~l~~~i  131 (174)
                      ++++.++....
T Consensus       190 ~~~~~~i~~~~  200 (202)
T COG0378         190 DEWLRFIEPQA  200 (202)
T ss_pred             HHHHHHHHhhc
Confidence            99998887653

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=97.48  E-value=0.002  Score=52.19  Aligned_cols=96  Identities=19%  Similarity=0.222  Sum_probs=61.9

Q ss_pred             CCeEEEEEEEeCCCchhh--------hh--h-------------------hHHhhc-cCCEEEEEE-eCC----ChhhHH
Q 043745           15 EGRTIKAQIWDTAGQERY--------RA--I-------------------TSAYYR-GALGALLVY-DVT----KPTTFE   59 (174)
Q Consensus        15 ~~~~~~l~l~D~~G~~~~--------~~--~-------------------~~~~~~-~~d~ii~v~-d~~----~~~s~~   59 (174)
                      ++-...+.|+||+|-+.-        ..  +                   ....+. ++|+.|+|. |.+    .++.+.
T Consensus        87 ~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~  166 (492)
T TIGR02836        87 EGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYV  166 (492)
T ss_pred             CCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccch
Confidence            566788999999984321        11  0                   233444 899999888 653    123344


Q ss_pred             HH-HHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEecc
Q 043745           60 NV-SRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSAL  115 (174)
Q Consensus        60 ~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  115 (174)
                      .. .+|+..+...   ++|++++.|+.|-....  ..+...++..+++++++.+|..
T Consensus       167 ~aEe~~i~eLk~~---~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~  218 (492)
T TIGR02836       167 EAEERVIEELKEL---NKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVE  218 (492)
T ss_pred             HHHHHHHHHHHhc---CCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHH
Confidence            44 4677777665   68999999999932211  3344556667778887777753

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.44  E-value=0.00018  Score=55.58  Aligned_cols=108  Identities=21%  Similarity=0.193  Sum_probs=67.6

Q ss_pred             EEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCC----hhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC--
Q 043745           20 KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTK----PTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV--   93 (174)
Q Consensus        20 ~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--   93 (174)
                      .+.|+|+||||-.-...-.-..-.|+.++++....    +++-+.+    ..+...  .-..++++.||+||-.+.+.  
T Consensus       126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHL----aaveiM--~LkhiiilQNKiDli~e~~A~e  199 (466)
T KOG0466|consen  126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHL----AAVEIM--KLKHIIILQNKIDLIKESQALE  199 (466)
T ss_pred             EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHH----HHHHHh--hhceEEEEechhhhhhHHHHHH
Confidence            36899999999654332222223466676665443    3444433    222111  13578999999999753321  


Q ss_pred             CHHHHHHHHHHh---CCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           94 ATEDAQSYAERE---GLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        94 ~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      ..++++.|....   +.+++++||.-..|++-+.+.++..+.-
T Consensus       200 q~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv  242 (466)
T KOG0466|consen  200 QHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV  242 (466)
T ss_pred             HHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC
Confidence            123455555544   4689999999999999999888877643

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=97.39  E-value=0.0041  Score=49.67  Aligned_cols=41  Identities=12%  Similarity=0.111  Sum_probs=29.0

Q ss_pred             CCeEEEEEeCCCCCC-ccCCCHHHHHHHHHHhCCcEEEEecc
Q 043745           75 NIVIMMIGNKTDLKH-LRAVATEDAQSYAEREGLSFIETSAL  115 (174)
Q Consensus        75 ~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~  115 (174)
                      .+|+++++|+.|..- ......+++.+++...+.+++.+||+
T Consensus       199 ~KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~  240 (364)
T PRK09601        199 AKPVLYVANVDEDDLADGNPYVKKVREIAAKEGAEVVVICAK  240 (364)
T ss_pred             cCCeEEEEECCccccccccHHHHHHHHHHHHcCCeEEEEEHH
Confidence            389999999998521 11223456677777778889999984

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=97.38  E-value=0.00055  Score=48.27  Aligned_cols=63  Identities=21%  Similarity=0.196  Sum_probs=44.5

Q ss_pred             EEEEEeCCCchh----hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 043745           20 KAQIWDTAGQER----YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKT   85 (174)
Q Consensus        20 ~l~l~D~~G~~~----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~   85 (174)
                      .+.|+||||...    ...++..++..+|++|+|.++...-+-.....|.......   ...+++|.||.
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence            479999999753    2356888899999999999999865544545555444333   33488888984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=97.38  E-value=0.002  Score=50.60  Aligned_cols=92  Identities=22%  Similarity=0.117  Sum_probs=62.1

Q ss_pred             EEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCcc---CCCHHH
Q 043745           21 AQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLR---AVATED   97 (174)
Q Consensus        21 l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~---~~~~~~   97 (174)
                      +-=.|+|||.+|-+..-.-..+.|+.|+|+.++|.+=- ..++.+...++..-  ..+++++||.|+.++.   ++-+-+
T Consensus       119 YaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MP-QTrEHlLLArQVGV--~~ivvfiNKvD~V~d~e~leLVEmE  195 (449)
T KOG0460|consen  119 YAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-QTREHLLLARQVGV--KHIVVFINKVDLVDDPEMLELVEME  195 (449)
T ss_pred             cccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCc-chHHHHHHHHHcCC--ceEEEEEecccccCCHHHHHHHHHH
Confidence            34579999999988766666788999999999985422 22222222233321  3588889999997432   334456


Q ss_pred             HHHHHHHhC-----CcEEEEecc
Q 043745           98 AQSYAEREG-----LSFIETSAL  115 (174)
Q Consensus        98 ~~~~~~~~~-----~~~~~~Sa~  115 (174)
                      ++++...+|     .|++.-||.
T Consensus       196 ~RElLse~gf~Gd~~PvI~GSAL  218 (449)
T KOG0460|consen  196 IRELLSEFGFDGDNTPVIRGSAL  218 (449)
T ss_pred             HHHHHHHcCCCCCCCCeeecchh
Confidence            788888886     478877654

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.37  E-value=0.0031  Score=45.06  Aligned_cols=86  Identities=26%  Similarity=0.307  Sum_probs=60.9

Q ss_pred             eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHH
Q 043745           17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATE   96 (174)
Q Consensus        17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~   96 (174)
                      ..+.+.|+|+++...  ......+..+|.+++++..+. .+...+..++..+...   +.|+.+|.||.|....   ...
T Consensus        91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~  161 (179)
T cd03110          91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE  161 (179)
T ss_pred             cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence            456789999996542  233455688999999998874 4666666666666543   4678899999997532   345


Q ss_pred             HHHHHHHHhCCcEEE
Q 043745           97 DAQSYAEREGLSFIE  111 (174)
Q Consensus        97 ~~~~~~~~~~~~~~~  111 (174)
                      +.+++++.++++++-
T Consensus       162 ~~~~~~~~~~~~vl~  176 (179)
T cd03110         162 EIEDYCEEEGIPILG  176 (179)
T ss_pred             HHHHHHHHcCCCeEE
Confidence            677788888887653

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.28  E-value=0.00069  Score=52.31  Aligned_cols=55  Identities=18%  Similarity=0.169  Sum_probs=39.5

Q ss_pred             CeEEEEEeCCCCCCccCCCHHHHHHHHHHh--CCcEEEEeccCCCCHHHHHHHHHHH
Q 043745           76 IVIMMIGNKTDLKHLRAVATEDAQSYAERE--GLSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        76 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      ..-++|+||+|+.+......+...+..+.+  ..+++.+||++++|++++++||..+
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            556888999999652222233344444444  4789999999999999999998764

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.19  E-value=0.0051  Score=46.26  Aligned_cols=115  Identities=19%  Similarity=0.257  Sum_probs=69.0

Q ss_pred             eEEEEEEEeCCCchhhhh---hhHHhhccCCEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc-
Q 043745           17 RTIKAQIWDTAGQERYRA---ITSAYYRGALGALLVYDVTKP--TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL-   90 (174)
Q Consensus        17 ~~~~l~l~D~~G~~~~~~---~~~~~~~~~d~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~-   90 (174)
                      .-+.+.+||.|||-.|-.   -....++++.++|||.|+-+.  +.+.++-..+....... +++-+=+++.|.|-..+ 
T Consensus        73 sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvN-p~in~EVfiHKvDGLsdd  151 (347)
T KOG3887|consen   73 SFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVN-PNINFEVFIHKVDGLSDD  151 (347)
T ss_pred             hhcceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecC-CCceEEEEEEeccCCchh
Confidence            346789999999976532   245678899999999998653  22333333333322222 57888899999996432 


Q ss_pred             ------cCCCHHHHHHHHHHhC-----CcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           91 ------RAVATEDAQSYAEREG-----LSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        91 ------~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                            +.+......++ ...|     +.++-+| .-.+.+-+.|.++++.+...
T Consensus       152 ~kietqrdI~qr~~d~l-~d~gle~v~vsf~LTS-IyDHSIfEAFSkvVQkLipq  204 (347)
T KOG3887|consen  152 FKIETQRDIHQRTNDEL-ADAGLEKVQVSFYLTS-IYDHSIFEAFSKVVQKLIPQ  204 (347)
T ss_pred             hhhhhHHHHHHHhhHHH-HhhhhccceEEEEEee-ecchHHHHHHHHHHHHHhhh
Confidence                  11111112222 2233     2355455 45678888888888776543

>cd01900 YchF YchF subfamily

Probab=97.14  E-value=0.0049  Score=47.41  Aligned_cols=39  Identities=21%  Similarity=0.239  Sum_probs=25.9

Q ss_pred             CeEEEEEeCCC--CCCccCCCHHHHHHHHHHhCCcEEEEecc
Q 043745           76 IVIMMIGNKTD--LKHLRAVATEDAQSYAEREGLSFIETSAL  115 (174)
Q Consensus        76 ~piilv~nK~D--l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  115 (174)
                      +|+++++|+.|  +... .-.......++...+.+++.+||+
T Consensus       196 KP~i~v~N~~e~d~~~~-~~~~~~~~~~~~~~~~~~i~~sa~  236 (274)
T cd01900         196 KPVLYVANVSEDDLANG-NNKVLKVREIAAKEGAEVIPISAK  236 (274)
T ss_pred             CCceeecccCHHHhccc-cHHHHHHHHHHhcCCCeEEEeeHH
Confidence            79999999988  3221 112234455555667889999985

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=97.12  E-value=0.00017  Score=57.90  Aligned_cols=74  Identities=19%  Similarity=0.243  Sum_probs=59.3

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      -+.++-++.+++++||||+-+|+-....+++-.|+++.|||.+-.-.-+.+-.|.+    ....++|-+.++||+|..
T Consensus        94 av~fdwkg~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~  167 (753)
T KOG0464|consen   94 AVNFDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKL  167 (753)
T ss_pred             eeecccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhh
Confidence            45678888999999999999999999999999999999999986544444445633    223468989999999974

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=97.03  E-value=0.0016  Score=53.48  Aligned_cols=81  Identities=19%  Similarity=0.251  Sum_probs=55.2

Q ss_pred             chhhhhhhHHhhccCCEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhC
Q 043745           29 QERYRAITSAYYRGALGALLVYDVTKPTTFE--NVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREG  106 (174)
Q Consensus        29 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~  106 (174)
                      .+.++.+|+. ++.+|+|+.++|+-++--|.  ++..++..+.    ..+-.+|++||.||....+  .....++..+.+
T Consensus       162 LE~WRQLWRV-lErSDivvqIVDARnPllfr~~dLe~Yvke~d----~~K~~~LLvNKaDLl~~~q--r~aWa~YF~~~n  234 (562)
T KOG1424|consen  162 LEIWRQLWRV-LERSDIVVQIVDARNPLLFRSPDLEDYVKEVD----PSKANVLLVNKADLLPPEQ--RVAWAEYFRQNN  234 (562)
T ss_pred             HHHHHHHHHH-HhhcceEEEEeecCCccccCChhHHHHHhccc----cccceEEEEehhhcCCHHH--HHHHHHHHHhcC
Confidence            4566777765 58899999999999875444  2344444432    2467888999999976322  123344556667


Q ss_pred             CcEEEEeccC
Q 043745          107 LSFIETSALE  116 (174)
Q Consensus       107 ~~~~~~Sa~~  116 (174)
                      +++++.||..
T Consensus       235 i~~vf~SA~~  244 (562)
T KOG1424|consen  235 IPVVFFSALA  244 (562)
T ss_pred             ceEEEEeccc
Confidence            9999999876

>COG1161 Predicted GTPases [General function prediction only]

Probab=96.99  E-value=0.0031  Score=49.67  Aligned_cols=94  Identities=19%  Similarity=0.156  Sum_probs=63.4

Q ss_pred             CCCch-hhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHH
Q 043745           26 TAGQE-RYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAER  104 (174)
Q Consensus        26 ~~G~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  104 (174)
                      .+|+. ++.......+..+|+++-|+|+-++.+...-     .+..... +.|.++|+||.||.+.. +..+=.+.+...
T Consensus        17 ~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~-----~l~~~v~-~k~~i~vlNK~DL~~~~-~~~~W~~~~~~~   89 (322)
T COG1161          17 FPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNP-----ELERIVK-EKPKLLVLNKADLAPKE-VTKKWKKYFKKE   89 (322)
T ss_pred             CCCchHHHHHHHHHhcccCCEEEEEEeccccccccCc-----cHHHHHc-cCCcEEEEehhhcCCHH-HHHHHHHHHHhc
Confidence            36654 5677788888999999999999998765431     2222222 34558999999997632 222333444444


Q ss_pred             hCCcEEEEeccCCCCHHHHHHH
Q 043745          105 EGLSFIETSALEAINVEKAFQT  126 (174)
Q Consensus       105 ~~~~~~~~Sa~~~~~i~~v~~~  126 (174)
                      .+...+.+++..+.+...+...
T Consensus        90 ~~~~~~~v~~~~~~~~~~i~~~  111 (322)
T COG1161          90 EGIKPIFVSAKSRQGGKKIRKA  111 (322)
T ss_pred             CCCccEEEEeecccCccchHHH
Confidence            4677888999888887776643

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=96.97  E-value=0.0022  Score=54.98  Aligned_cols=71  Identities=20%  Similarity=0.324  Sum_probs=52.1

Q ss_pred             eeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCCh---hhHHHHH-HHHHHHHhhcCCCCeEEEEEeC
Q 043745            9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP---TTFENVS-RWLKELRDHADSNIVIMMIGNK   84 (174)
Q Consensus         9 ~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~-~~~~~i~~~~~~~~piilv~nK   84 (174)
                      +.-+.+-...+.++|+|+|||-+|.+.......=+|++++++|+...   ++..-+. -|.+        ...+++|+||
T Consensus        62 ss~is~~~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~--------~~~~~lvink  133 (887)
T KOG0467|consen   62 SSAISLLHKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE--------GLKPILVINK  133 (887)
T ss_pred             ccccccccCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc--------cCceEEEEeh
Confidence            33445555678899999999999999998888889999999999764   2222221 1322        3456788899


Q ss_pred             CCC
Q 043745           85 TDL   87 (174)
Q Consensus        85 ~Dl   87 (174)
                      +|.
T Consensus       134 idr  136 (887)
T KOG0467|consen  134 IDR  136 (887)
T ss_pred             hhh
Confidence            993

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=96.59  E-value=0.017  Score=44.73  Aligned_cols=111  Identities=18%  Similarity=0.155  Sum_probs=67.2

Q ss_pred             CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCC
Q 043745           15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVA   94 (174)
Q Consensus        15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~   94 (174)
                      +..++-+.|++|.|--.-.-.   ...-+|.+++|.-..-.+..+.++.=+-+        +-=|+|+||.|+..... .
T Consensus       140 dAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimE--------iaDi~vINKaD~~~A~~-a  207 (323)
T COG1703         140 DAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIME--------IADIIVINKADRKGAEK-A  207 (323)
T ss_pred             HhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhh--------hhheeeEeccChhhHHH-H
Confidence            344566788888764322221   23458999999877666666655432222        22367889999754311 1


Q ss_pred             HHHH---HHHHH----HhC--CcEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q 043745           95 TEDA---QSYAE----REG--LSFIETSALEAINVEKAFQTILSEIYRIISK  137 (174)
Q Consensus        95 ~~~~---~~~~~----~~~--~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~  137 (174)
                      ..+.   ..+..    ..+  -+++.+||.+++|+.++++.+.++..-....
T Consensus       208 ~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~s  259 (323)
T COG1703         208 ARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTES  259 (323)
T ss_pred             HHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhc
Confidence            1111   11111    112  3699999999999999999888876554433

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=96.57  E-value=0.0095  Score=42.63  Aligned_cols=44  Identities=23%  Similarity=0.185  Sum_probs=27.8

Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           44 LGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        44 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      |++++|+|+.++.+... ..+...+. ....+.|+|+|.||+|+.+
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~   44 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVP   44 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence            78999999987532221 12222221 1112589999999999964

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=96.52  E-value=0.031  Score=44.75  Aligned_cols=100  Identities=19%  Similarity=0.188  Sum_probs=62.2

Q ss_pred             EEEEEeCCCchhhhhhhHHhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC----
Q 043745           20 KAQIWDTAGQERYRAITSAYYR--GALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV----   93 (174)
Q Consensus        20 ~l~l~D~~G~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~----   93 (174)
                      .+.|.|.+|+.+|.+..-.-+.  -.|...+|++++..-.+. ..+.+..+...   ++|++++.+|+|+.....+    
T Consensus       250 lvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~AL---~iPfFvlvtK~Dl~~~~~~~~tv  325 (591)
T KOG1143|consen  250 LVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAAL---NIPFFVLVTKMDLVDRQGLKKTV  325 (591)
T ss_pred             eEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHHh---CCCeEEEEEeeccccchhHHHHH
Confidence            4789999999999875433322  467888888887542221 12333444433   7999999999999543111    


Q ss_pred             --------------------CHHHHHHHHHHh----CCcEEEEeccCCCCHHHH
Q 043745           94 --------------------ATEDAQSYAERE----GLSFIETSALEAINVEKA  123 (174)
Q Consensus        94 --------------------~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~v  123 (174)
                                          +..++...+.+.    -.|+|-+|+.+|+|++-+
T Consensus       326 ~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll  379 (591)
T KOG1143|consen  326 KDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL  379 (591)
T ss_pred             HHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence                                111222222222    257899999999997654

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=96.35  E-value=0.029  Score=48.19  Aligned_cols=71  Identities=14%  Similarity=0.079  Sum_probs=43.6

Q ss_pred             EEEEEEeCCCchhhh-------h---hhHHhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC--CCeEEEEEeC
Q 043745           19 IKAQIWDTAGQERYR-------A---ITSAYYR--GALGALLVYDVTKPTTFENVSRWLKELRDHADS--NIVIMMIGNK   84 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~-------~---~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK   84 (174)
                      ..+.|+||||..+..       .   ....++.  .+|++|||..++.......-..++..|....+.  -..+|||.|+
T Consensus       166 ~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFTh  245 (763)
T TIGR00993       166 VKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTH  245 (763)
T ss_pred             ceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeC
Confidence            568999999976421       1   1223444  589999999876433222222455555554442  2468889999


Q ss_pred             CCCCC
Q 043745           85 TDLKH   89 (174)
Q Consensus        85 ~Dl~~   89 (174)
                      .|..+
T Consensus       246 gD~lp  250 (763)
T TIGR00993       246 AASAP  250 (763)
T ss_pred             CccCC
Confidence            99764

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=96.31  E-value=0.033  Score=47.52  Aligned_cols=92  Identities=15%  Similarity=0.195  Sum_probs=60.2

Q ss_pred             EEEEEeCCCch---hhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHH
Q 043745           20 KAQIWDTAGQE---RYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATE   96 (174)
Q Consensus        20 ~l~l~D~~G~~---~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~   96 (174)
                      -+.+.|.||.+   ........+..++|++|||.++.+.....+ ++++.....   ....|+++.||+|....++...+
T Consensus       207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~---~KpniFIlnnkwDasase~ec~e  282 (749)
T KOG0448|consen  207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSE---EKPNIFILNNKWDASASEPECKE  282 (749)
T ss_pred             cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhc---cCCcEEEEechhhhhcccHHHHH
Confidence            36789999976   345567888899999999999988654433 333333322   23457778899998765444445


Q ss_pred             HHHHHHHHhCC--------cEEEEecc
Q 043745           97 DAQSYAEREGL--------SFIETSAL  115 (174)
Q Consensus        97 ~~~~~~~~~~~--------~~~~~Sa~  115 (174)
                      .+.+...+++.        -++++||+
T Consensus       283 ~V~~Qi~eL~v~~~~eA~DrvfFVS~~  309 (749)
T KOG0448|consen  283 DVLKQIHELSVVTEKEAADRVFFVSAK  309 (749)
T ss_pred             HHHHHHHhcCcccHhhhcCeeEEEecc
Confidence            55444444432        47889965

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=96.31  E-value=0.034  Score=41.06  Aligned_cols=100  Identities=19%  Similarity=0.117  Sum_probs=50.5

Q ss_pred             EECCeEEEEEEEeCCCchhh-------hhhh----HHhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEE
Q 043745           13 QVEGRTIKAQIWDTAGQERY-------RAIT----SAYYRGALGALLVYDVTKPT-TFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus        13 ~~~~~~~~l~l~D~~G~~~~-------~~~~----~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      .+++  ..+.++||||-.+.       ...+    .....+.++++||++..... .-..+-+++..+-... --..+||
T Consensus        45 ~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~-~~k~~iv  121 (212)
T PF04548_consen   45 EVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEE-IWKHTIV  121 (212)
T ss_dssp             EETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGG-GGGGEEE
T ss_pred             eecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHH-HHhHhhH
Confidence            4566  45789999994321       1111    22345789999999998321 1122222333221110 1245888


Q ss_pred             EEeCCCCCCccCCC-------HHHHHHHHHHhCCcEEEEecc
Q 043745           81 IGNKTDLKHLRAVA-------TEDAQSYAEREGLSFIETSAL  115 (174)
Q Consensus        81 v~nK~Dl~~~~~~~-------~~~~~~~~~~~~~~~~~~Sa~  115 (174)
                      |.|..|......+.       ...++++....+-.|+..+.+
T Consensus       122 vfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~~f~n~  163 (212)
T PF04548_consen  122 VFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYHVFNNK  163 (212)
T ss_dssp             EEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEEECCTT
T ss_pred             HhhhccccccccHHHHHhccCchhHhHHhhhcCCEEEEEecc
Confidence            88888865433311       122445566666667666554

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=96.25  E-value=0.0086  Score=45.48  Aligned_cols=102  Identities=20%  Similarity=0.154  Sum_probs=59.3

Q ss_pred             EEEEEEeCCC--chhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHH
Q 043745           19 IKAQIWDTAG--QERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATE   96 (174)
Q Consensus        19 ~~l~l~D~~G--~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~   96 (174)
                      +.+.|++|.|  |.+..     ...-+|.+++|....-.+..+.++.=+-+        +.=++|+||.|++..+. ...
T Consensus       122 ~D~IiiETVGvGQsE~~-----I~~~aD~~v~v~~Pg~GD~iQ~~KaGimE--------iaDi~vVNKaD~~gA~~-~~~  187 (266)
T PF03308_consen  122 FDVIIIETVGVGQSEVD-----IADMADTVVLVLVPGLGDEIQAIKAGIME--------IADIFVVNKADRPGADR-TVR  187 (266)
T ss_dssp             -SEEEEEEESSSTHHHH-----HHTTSSEEEEEEESSTCCCCCTB-TTHHH--------H-SEEEEE--SHHHHHH-HHH
T ss_pred             CCEEEEeCCCCCccHHH-----HHHhcCeEEEEecCCCccHHHHHhhhhhh--------hccEEEEeCCChHHHHH-HHH
Confidence            4466777755  44322     23468999999988776666554322112        22367889999754321 122


Q ss_pred             HHHHHHHHh-------CCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           97 DAQSYAERE-------GLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        97 ~~~~~~~~~-------~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      +.+......       .-+++.+||.++.|++++++.+.++.-..
T Consensus       188 ~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l  232 (266)
T PF03308_consen  188 DLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYL  232 (266)
T ss_dssp             HHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence            222222211       13799999999999999999887765443

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.24  E-value=0.0079  Score=47.89  Aligned_cols=67  Identities=21%  Similarity=0.281  Sum_probs=47.2

Q ss_pred             EEEEEeCCCch-----------hhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745           20 KAQIWDTAGQE-----------RYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus        20 ~l~l~D~~G~~-----------~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      .+.++||||.-           +|.....=|..++|.||++||....+--++.++.+..++.+   +-.+-||.||.|..
T Consensus       148 ~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~---EdkiRVVLNKADqV  224 (532)
T KOG1954|consen  148 SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH---EDKIRVVLNKADQV  224 (532)
T ss_pred             heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC---cceeEEEecccccc
Confidence            47899999942           33445666788999999999987654444444555555544   34577788999975


Q ss_pred             C
Q 043745           89 H   89 (174)
Q Consensus        89 ~   89 (174)
                      +
T Consensus       225 d  225 (532)
T KOG1954|consen  225 D  225 (532)
T ss_pred             C
Confidence            4

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=96.24  E-value=0.083  Score=37.70  Aligned_cols=88  Identities=9%  Similarity=0.027  Sum_probs=62.2

Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHH
Q 043745           42 GALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVE  121 (174)
Q Consensus        42 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  121 (174)
                      ..|.|+|++|.....|+..++.-+..+...---++-++ +++-....+...+...++.+++..+..+++.+.-.+.++..
T Consensus        64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~fflGKVCf-l~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~  142 (176)
T PF11111_consen   64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSFFLGKVCF-LATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRT  142 (176)
T ss_pred             eeEEEEEEEecCCcccHHHHHHHHhhCChhhhccceEE-EEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHH
Confidence            57999999999999999998877666632222234444 44555544446788999999999999999998776665555


Q ss_pred             HHHHHHHHH
Q 043745          122 KAFQTILSE  130 (174)
Q Consensus       122 ~v~~~l~~~  130 (174)
                      .+-+.+++.
T Consensus       143 ~lAqRLL~~  151 (176)
T PF11111_consen  143 SLAQRLLRM  151 (176)
T ss_pred             HHHHHHHHH
Confidence            444444443

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=96.09  E-value=0.01  Score=45.51  Aligned_cols=121  Identities=17%  Similarity=0.153  Sum_probs=71.0

Q ss_pred             CCCccceeEEEECCeEEEEEEEeCCC----------chhhhhhhHHhhccCC---EEEEEEeCCCh-h-hHHHHHHHHHH
Q 043745            3 QPRLGKLCDFQVEGRTIKAQIWDTAG----------QERYRAITSAYYRGAL---GALLVYDVTKP-T-TFENVSRWLKE   67 (174)
Q Consensus         3 ~pt~g~~~~~~~~~~~~~l~l~D~~G----------~~~~~~~~~~~~~~~d---~ii~v~d~~~~-~-s~~~~~~~~~~   67 (174)
                      .|+.|+++.+....-.-.+.+.|.+|          ..++..+...|+.+-+   -+++++|++-+ + .......|+.+
T Consensus       167 k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge  246 (320)
T KOG2486|consen  167 KSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE  246 (320)
T ss_pred             CCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh
Confidence            45666777666655556789999999          2344555566654433   44555566543 2 22223445443


Q ss_pred             HHhhcCCCCeEEEEEeCCCCCCcc----CCCHHHHHHHHHHh-------CCcEEEEeccCCCCHHHHHHHHHH
Q 043745           68 LRDHADSNIVIMMIGNKTDLKHLR----AVATEDAQSYAERE-------GLSFIETSALEAINVEKAFQTILS  129 (174)
Q Consensus        68 i~~~~~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~v~~~l~~  129 (174)
                            .++|+.+|.||+|.....    .-....++.....+       ..+++.+|+.++.|++.++--+.+
T Consensus       247 ------~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  247 ------NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             ------cCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehhh
Confidence                  379999999999963210    01112222212221       246788999999999988765543

>KOG2484 consensus GTPase [General function prediction only]

Probab=96.02  E-value=0.015  Score=46.51  Aligned_cols=67  Identities=18%  Similarity=0.146  Sum_probs=46.3

Q ss_pred             chhhhhhhHHhhccCCEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHH
Q 043745           29 QERYRAITSAYYRGALGALLVYDVTKPTTFEN--VSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAER  104 (174)
Q Consensus        29 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  104 (174)
                      ...|.+.....++.+|+||-|.|+-|+.+-..  +.+|+..   .. .+...|+|.||+||-.     .+.+++|+..
T Consensus       133 ~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~---~~-gnKkLILVLNK~DLVP-----rEv~e~Wl~Y  201 (435)
T KOG2484|consen  133 KKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQ---AH-GNKKLILVLNKIDLVP-----REVVEKWLVY  201 (435)
T ss_pred             HHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHh---cc-CCceEEEEeehhccCC-----HHHHHHHHHH
Confidence            34566677777889999999999999876543  3444332   22 2578999999999965     3444545443

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.85  E-value=0.048  Score=41.31  Aligned_cols=96  Identities=21%  Similarity=0.341  Sum_probs=63.8

Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc------------------c-----------
Q 043745           41 RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL------------------R-----------   91 (174)
Q Consensus        41 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~------------------~-----------   91 (174)
                      ....+++.+||.+....+..+..|+.......-  --++.++||.|....                  +           
T Consensus        77 ~pl~a~vmvfdlse~s~l~alqdwl~htdinsf--dillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgi  154 (418)
T KOG4273|consen   77 EPLQAFVMVFDLSEKSGLDALQDWLPHTDINSF--DILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGI  154 (418)
T ss_pred             cceeeEEEEEeccchhhhHHHHhhccccccccc--hhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccc
Confidence            456799999999999999999999886432211  235667899985110                  0           


Q ss_pred             ---------------CCCHHHHHHHHHHhCCcEEEEeccCC------------CCHHHHHHHHHHHHHHHHhhc
Q 043745           92 ---------------AVATEDAQSYAEREGLSFIETSALEA------------INVEKAFQTILSEIYRIISKK  138 (174)
Q Consensus        92 ---------------~~~~~~~~~~~~~~~~~~~~~Sa~~~------------~~i~~v~~~l~~~i~~~~~~~  138 (174)
                                     -.......+|+.++|+++++.+|...            +|++.+|.++-..+-.-+..+
T Consensus       155 setegssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpgmilk  228 (418)
T KOG4273|consen  155 SETEGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPGMILK  228 (418)
T ss_pred             cccccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCccceec
Confidence                           01123357888899999999998432            567777777766554444333

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=95.79  E-value=0.016  Score=47.97  Aligned_cols=69  Identities=22%  Similarity=0.303  Sum_probs=49.8

Q ss_pred             CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745           15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL   87 (174)
Q Consensus        15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl   87 (174)
                      ++.++.++++|.|||-+|.+.....++-.|+.+.|+|+.+.--.+. ...+.+   ...+.+..+++.||.|.
T Consensus        94 d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQT-ETVLrQ---A~~ERIkPvlv~NK~DR  162 (842)
T KOG0469|consen   94 DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQ---AIAERIKPVLVMNKMDR  162 (842)
T ss_pred             CCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEech-HHHHHH---HHHhhccceEEeehhhH
Confidence            5667899999999999999999999999999999999987422211 111111   11223445677899995

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=95.55  E-value=0.11  Score=35.59  Aligned_cols=66  Identities=15%  Similarity=0.182  Sum_probs=44.3

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      +.+.++|+++..  .......+..+|.++++.+.+ ..++..+...+..+.+... ..++.+|.|+.+..
T Consensus        45 yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~~-~~~~~lVvN~~~~~  110 (139)
T cd02038          45 YDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-PTSITDAYALIKKLAKQLR-VLNFRVVVNRAESP  110 (139)
T ss_pred             CCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHhcC-CCCEEEEEeCCCCH
Confidence            457899998743  333456788999999999875 3455555454555544332 45677899999754

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=95.55  E-value=0.21  Score=38.43  Aligned_cols=97  Identities=19%  Similarity=0.080  Sum_probs=59.0

Q ss_pred             EEEEEEEeCCCchhhhhhhH----H---hh-----ccCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 043745           18 TIKAQIWDTAGQERYRAITS----A---YY-----RGALGALLVYDVTKP-TTFENVSRWLKELRDHADSNIVIMMIGNK   84 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~----~---~~-----~~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piilv~nK   84 (174)
                      .+.+.|+||+|........-    .   ..     ...|.+++|.|++.. +.+..+    ..+.+..+   +.-+|.||
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~~---~~g~IlTK  226 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAVG---LTGIILTK  226 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhCC---CCEEEEEc
Confidence            35689999999765432211    1   11     138999999999753 233322    22222211   34567899


Q ss_pred             CCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043745           85 TDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI  127 (174)
Q Consensus        85 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l  127 (174)
                      .|-...    .-....+....++|+.+++  +|++++++...-
T Consensus       227 lDe~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~~~  263 (272)
T TIGR00064       227 LDGTAK----GGIILSIAYELKLPIKFIG--VGEKIDDLAPFD  263 (272)
T ss_pred             cCCCCC----ccHHHHHHHHHCcCEEEEe--CCCChHhCccCC
Confidence            997542    2345555667789998887  788887764433

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=95.23  E-value=0.21  Score=37.52  Aligned_cols=78  Identities=24%  Similarity=0.245  Sum_probs=50.3

Q ss_pred             EEEEEEeC-CCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHH
Q 043745           19 IKAQIWDT-AGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATED   97 (174)
Q Consensus        19 ~~l~l~D~-~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~   97 (174)
                      ..+.+.|| +|.+.|.   +...+++|.+|.|+|.+- +++...++..+......  =.++.+|+||.|-.      ...
T Consensus       134 ~e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taeri~~L~~elg--~k~i~~V~NKv~e~------e~~  201 (255)
T COG3640         134 YEVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAERIKELAEELG--IKRIFVVLNKVDEE------EEL  201 (255)
T ss_pred             CcEEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHHhC--CceEEEEEeeccch------hHH
Confidence            34678887 7777664   344678999999999863 45554444433322321  26899999999853      344


Q ss_pred             HHHHHHHhCCc
Q 043745           98 AQSYAEREGLS  108 (174)
Q Consensus        98 ~~~~~~~~~~~  108 (174)
                      ..+++...+++
T Consensus       202 ~~~~~~~~~~~  212 (255)
T COG3640         202 LRELAEELGLE  212 (255)
T ss_pred             HHhhhhccCCe
Confidence            55666666653

>PRK14974 cell division protein FtsY; Provisional

Probab=95.19  E-value=0.28  Score=38.97  Aligned_cols=100  Identities=17%  Similarity=0.054  Sum_probs=59.3

Q ss_pred             EEEEEEeCCCchhhhh----hhHHhh--ccCCEEEEEEeCCChhh-HHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCcc
Q 043745           19 IKAQIWDTAGQERYRA----ITSAYY--RGALGALLVYDVTKPTT-FENVSRWLKELRDHADSNIVIMMIGNKTDLKHLR   91 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~----~~~~~~--~~~d~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~   91 (174)
                      +.+.|+||+|......    ......  -..|.++||.|+...+. .+.+    ..+....  + .--+|.||.|.... 
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a----~~f~~~~--~-~~giIlTKlD~~~~-  294 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA----REFNEAV--G-IDGVILTKVDADAK-  294 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH----HHHHhcC--C-CCEEEEeeecCCCC-
Confidence            4589999999764321    112221  25789999999976432 2222    2222211  1 23467799998542 


Q ss_pred             CCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           92 AVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                         .-.+..++...+.|+.+++  +|++++++...-.+.+
T Consensus       295 ---~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~~~~~~  329 (336)
T PRK14974        295 ---GGAALSIAYVIGKPILFLG--VGQGYDDLIPFDPDWF  329 (336)
T ss_pred             ---ccHHHHHHHHHCcCEEEEe--CCCChhhcccCCHHHH
Confidence               2234455566789998887  7899888754433333

>PHA02518 ParA-like protein; Provisional

Probab=95.16  E-value=0.23  Score=36.10  Aligned_cols=67  Identities=15%  Similarity=0.068  Sum_probs=41.9

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCC
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP--TTFENVSRWLKELRDHADSNIV-IMMIGNKTDL   87 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl   87 (174)
                      .+.+.|+|++|..  .......+..+|.+|++...+..  ....++.+++..+..... ..+ ..++.|+.+.
T Consensus        76 ~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv~n~~~~  145 (211)
T PHA02518         76 GYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTD-GLPKFAFIISRAIK  145 (211)
T ss_pred             cCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCC-CCceEEEEEeccCC
Confidence            4568999999874  34466677899999999987632  334444445554433322 344 4456677653

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=95.00  E-value=0.05  Score=43.87  Aligned_cols=104  Identities=22%  Similarity=0.201  Sum_probs=66.0

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChh---hHHHH---HHHHHHHHhhcCCCCeEEEEEeCCCCCCccC
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPT---TFENV---SRWLKELRDHADSNIVIMMIGNKTDLKHLRA   92 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~---~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~   92 (174)
                      -++.+.|.+|+-.|-...-.-..+||.-++|.++...+   .|++-   .+-. .+..... -..+|+++||+|-+....
T Consensus       157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha-~Lakt~g-v~~lVv~vNKMddPtvnW  234 (501)
T KOG0459|consen  157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHA-MLAKTAG-VKHLIVLINKMDDPTVNW  234 (501)
T ss_pred             eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHH-HHHHhhc-cceEEEEEEeccCCccCc
Confidence            46899999999998765555556889999998874321   23321   1111 1111111 356888899999764211


Q ss_pred             ------CCHHHHHHHHHHhC------CcEEEEeccCCCCHHHHH
Q 043745           93 ------VATEDAQSYAEREG------LSFIETSALEAINVEKAF  124 (174)
Q Consensus        93 ------~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~v~  124 (174)
                            -..++...|.+.+|      ..++++|..+|.++++..
T Consensus       235 s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~  278 (501)
T KOG0459|consen  235 SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT  278 (501)
T ss_pred             chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence                  11244556666555      368999999999988754

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=94.93  E-value=0.14  Score=41.34  Aligned_cols=101  Identities=15%  Similarity=0.062  Sum_probs=58.0

Q ss_pred             hccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCC
Q 043745           40 YRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAIN  119 (174)
Q Consensus        40 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  119 (174)
                      +..+|++|-|.|+.|+..... ...-..++.. .+...+|+|.||+||... .+...=+..+..++-.--|..|.....|
T Consensus       211 iDSSDVvvqVlDARDPmGTrc-~~ve~ylkke-~phKHli~vLNKvDLVPt-wvt~~Wv~~lSkeyPTiAfHAsi~nsfG  287 (572)
T KOG2423|consen  211 IDSSDVVVQVLDARDPMGTRC-KHVEEYLKKE-KPHKHLIYVLNKVDLVPT-WVTAKWVRHLSKEYPTIAFHASINNSFG  287 (572)
T ss_pred             hcccceeEEeeeccCCccccc-HHHHHHHhhc-CCcceeEEEeeccccccH-HHHHHHHHHHhhhCcceeeehhhcCccc
Confidence            457899999999998754321 1111223322 347889999999999652 1222223333344433346677777777


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCC
Q 043745          120 VEKAFQTILSEIYRIISKKSLSSG  143 (174)
Q Consensus       120 i~~v~~~l~~~i~~~~~~~~~~~~  143 (174)
                      -..+++-+.+...-+..+++.+.+
T Consensus       288 KgalI~llRQf~kLh~dkkqISVG  311 (572)
T KOG2423|consen  288 KGALIQLLRQFAKLHSDKKQISVG  311 (572)
T ss_pred             hhHHHHHHHHHHhhccCccceeee
Confidence            777666444443333345555554

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=94.88  E-value=0.25  Score=39.81  Aligned_cols=106  Identities=13%  Similarity=0.173  Sum_probs=49.0

Q ss_pred             EEEEEeCCCchhhhhhhHH-----hhccCCEEEEEEeCCChhhHHHHHHHHH-HHHhhcCCCCeEEEEEeCCCC------
Q 043745           20 KAQIWDTAGQERYRAITSA-----YYRGALGALLVYDVTKPTTFENVSRWLK-ELRDHADSNIVIMMIGNKTDL------   87 (174)
Q Consensus        20 ~l~l~D~~G~~~~~~~~~~-----~~~~~d~ii~v~d~~~~~s~~~~~~~~~-~i~~~~~~~~piilv~nK~Dl------   87 (174)
                      .+.|||.||...-......     -+...|.+|++.+-    .|....-|+. .+.+.   +.|+++|-+|.|.      
T Consensus        87 nv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~----rf~~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~  159 (376)
T PF05049_consen   87 NVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSE----RFTENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNER  159 (376)
T ss_dssp             TEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESS----S--HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHHH
T ss_pred             CCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCC----CCchhhHHHHHHHHHc---CCcEEEEEecccccHhhhh
Confidence            3899999996432222222     34577988887663    3444433333 34333   6899999999995      


Q ss_pred             -CCccCCCHHH----HHHHHHH----hCC---cEEEEeccCCC--CHHHHHHHHHHHHH
Q 043745           88 -KHLRAVATED----AQSYAER----EGL---SFIETSALEAI--NVEKAFQTILSEIY  132 (174)
Q Consensus        88 -~~~~~~~~~~----~~~~~~~----~~~---~~~~~Sa~~~~--~i~~v~~~l~~~i~  132 (174)
                       ..++....++    +++.+.+    .|+   ++|-+|..+-.  +...+.+.|.+.+.
T Consensus       160 ~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp  218 (376)
T PF05049_consen  160 RRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLP  218 (376)
T ss_dssp             CC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-
T ss_pred             ccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhH
Confidence             1122333322    2333222    243   58888887554  35555555554443

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases

Probab=94.84  E-value=0.75  Score=32.80  Aligned_cols=85  Identities=13%  Similarity=0.222  Sum_probs=60.9

Q ss_pred             hccCCEEEEEEeCCCh-------hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEE
Q 043745           40 YRGALGALLVYDVTKP-------TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIET  112 (174)
Q Consensus        40 ~~~~d~ii~v~d~~~~-------~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  112 (174)
                      ++...+=.+++|.+|.       +-...+..|+..++.... ...++||-|-.-..+  .....+++.+.+.+|++++.-
T Consensus        36 Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~-~~~v~IvSNsaGs~~--d~~~~~a~~~~~~lgIpvl~h  112 (168)
T PF09419_consen   36 LKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFG-KDRVLIVSNSAGSSD--DPDGERAEALEKALGIPVLRH  112 (168)
T ss_pred             hhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCC-CCeEEEEECCCCccc--CccHHHHHHHHHhhCCcEEEe
Confidence            5566677778888762       224567889998877643 235888988764432  345788999999999999988


Q ss_pred             eccCCCCHHHHHHHH
Q 043745          113 SALEAINVEKAFQTI  127 (174)
Q Consensus       113 Sa~~~~~i~~v~~~l  127 (174)
                      .++..-+..+++..+
T Consensus       113 ~~kKP~~~~~i~~~~  127 (168)
T PF09419_consen  113 RAKKPGCFREILKYF  127 (168)
T ss_pred             CCCCCccHHHHHHHH
Confidence            888887766665544

All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.

>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]

Probab=94.83  E-value=0.38  Score=38.48  Aligned_cols=69  Identities=13%  Similarity=0.198  Sum_probs=56.8

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      .+.+.++|.|  ..+......++..+|-+++|++.+ -.+++..++.+..+........++.+++|+.+.+.
T Consensus       217 ~~~~vV~Dlp--~~~~~~t~~vL~~Sd~iviv~e~s-l~slR~ak~lld~l~~~r~~~~~p~lv~n~~~~~~  285 (366)
T COG4963         217 SFDFVVVDLP--NIWTDWTRQVLSGSDEIVIVAEPS-LASLRNAKELLDELKRLRPNDPKPILVLNRVGVPK  285 (366)
T ss_pred             cCCeEEEcCC--CccchHHHHHHhcCCeEEEEeccc-HHHHHHHHHHHHHHHHhCCCCCCceEEeeecCCCC
Confidence            4568899998  445667788899999999999864 56788889999999888877788889999998764

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=94.61  E-value=0.18  Score=40.59  Aligned_cols=99  Identities=13%  Similarity=0.085  Sum_probs=56.0

Q ss_pred             EEEEEeCCCchhhhhhhHHhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHH
Q 043745           20 KAQIWDTAGQERYRAITSAYY--RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATED   97 (174)
Q Consensus        20 ~l~l~D~~G~~~~~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~   97 (174)
                      .+.|+|.+|+++|-+..-.-+  .-.|...+++-+.-. -.--.++.+.....   -.+|+++|.+|+|+..... ..+.
T Consensus       220 viTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLALa---L~VPVfvVVTKIDMCPANi-LqEt  294 (641)
T KOG0463|consen  220 VITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLALA---LHVPVFVVVTKIDMCPANI-LQET  294 (641)
T ss_pred             eEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhhhh---hcCcEEEEEEeeccCcHHH-HHHH
Confidence            478999999999976432211  234556666544321 01111222222222   2699999999999965432 2223


Q ss_pred             HHHHH---H--------------------------HhCCcEEEEeccCCCCHHHH
Q 043745           98 AQSYA---E--------------------------REGLSFIETSALEAINVEKA  123 (174)
Q Consensus        98 ~~~~~---~--------------------------~~~~~~~~~Sa~~~~~i~~v  123 (174)
                      .+.+.   +                          +.-+++|.+|..+|.|+.-+
T Consensus       295 mKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LL  349 (641)
T KOG0463|consen  295 MKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLL  349 (641)
T ss_pred             HHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHH
Confidence            32221   1                          11257899999999997653

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=94.59  E-value=0.92  Score=34.69  Aligned_cols=50  Identities=24%  Similarity=0.338  Sum_probs=35.9

Q ss_pred             CeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           76 IVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        76 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      ++++.|.||+|.     ++.++...++++.+..++  |....-|++.+++.+-+.+.
T Consensus       239 ~~ClYvYnKID~-----vs~eevdrlAr~PnsvVi--SC~m~lnld~lle~iWe~l~  288 (364)
T KOG1486|consen  239 IKCLYVYNKIDQ-----VSIEEVDRLARQPNSVVI--SCNMKLNLDRLLERIWEELN  288 (364)
T ss_pred             EEEEEEeeccce-----ecHHHHHHHhcCCCcEEE--EeccccCHHHHHHHHHHHhc
Confidence            677777888874     667888888887765555  55667788888877766543

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=94.58  E-value=0.46  Score=37.44  Aligned_cols=97  Identities=19%  Similarity=0.128  Sum_probs=57.5

Q ss_pred             EEEEEEEeCCCchhhhhh----hHHhh--------ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 043745           18 TIKAQIWDTAGQERYRAI----TSAYY--------RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKT   85 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~----~~~~~--------~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~   85 (174)
                      .+.+.|+||+|.......    ...+.        ...+..++|.|++..+  +.+... ..+....   -+.-+|.||.
T Consensus       196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a-~~f~~~~---~~~giIlTKl  269 (318)
T PRK10416        196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQA-KAFHEAV---GLTGIILTKL  269 (318)
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHH-HHHHhhC---CCCEEEEECC
Confidence            356899999997543211    11111        2467889999998542  222221 2222111   2345778999


Q ss_pred             CCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHH
Q 043745           86 DLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQT  126 (174)
Q Consensus        86 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~  126 (174)
                      |... +   .-.+...+...++|+.+++  +|++++++-..
T Consensus       270 D~t~-~---~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~~  304 (318)
T PRK10416        270 DGTA-K---GGVVFAIADELGIPIKFIG--VGEGIDDLQPF  304 (318)
T ss_pred             CCCC-C---ccHHHHHHHHHCCCEEEEe--CCCChhhCccC
Confidence            9543 1   2345556677799999888  78888776443

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=94.38  E-value=0.076  Score=41.76  Aligned_cols=107  Identities=19%  Similarity=0.146  Sum_probs=66.8

Q ss_pred             EEEEEEeCCCch---------hhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC----CeEEEEEeCC
Q 043745           19 IKAQIWDTAGQE---------RYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSN----IVIMMIGNKT   85 (174)
Q Consensus        19 ~~l~l~D~~G~~---------~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~----~piilv~nK~   85 (174)
                      ..+.+.||-|--         .|...... +..+|.++.|.|+++++.-......+.-+....-.+    ..++=|-||+
T Consensus       226 ~~vlltDTvGFisdLP~~LvaAF~ATLee-VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnki  304 (410)
T KOG0410|consen  226 NFVLLTDTVGFISDLPIQLVAAFQATLEE-VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKI  304 (410)
T ss_pred             cEEEEeechhhhhhCcHHHHHHHHHHHHH-HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccc
Confidence            347889998832         23333333 468999999999999865544444444443332222    2355677888


Q ss_pred             CCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q 043745           86 DLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIIS  136 (174)
Q Consensus        86 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~  136 (174)
                      |..+...-  .+      ..  ..+.+||++|+|++++.+.+-..+..-..
T Consensus       305 D~e~~~~e--~E------~n--~~v~isaltgdgl~el~~a~~~kv~~~t~  345 (410)
T KOG0410|consen  305 DYEEDEVE--EE------KN--LDVGISALTGDGLEELLKAEETKVASETT  345 (410)
T ss_pred             ccccccCc--cc------cC--CccccccccCccHHHHHHHHHHHhhhhhe
Confidence            87653211  11      11  15678999999999999887777666543

>PF14331 ImcF-related_N: ImcF-related N-terminal domain

Probab=94.16  E-value=0.18  Score=38.63  Aligned_cols=97  Identities=13%  Similarity=0.184  Sum_probs=50.0

Q ss_pred             ccCCEEEEEEeCCCh-----h--hHHHH----HHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHH--HHHHHHHHhCC
Q 043745           41 RGALGALLVYDVTKP-----T--TFENV----SRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATE--DAQSYAEREGL  107 (174)
Q Consensus        41 ~~~d~ii~v~d~~~~-----~--s~~~~----~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~--~~~~~~~~~~~  107 (174)
                      +..+|+|+++|+.+-     +  .+...    ..-+.++....+..+|+.+|+||+|+-..-..-..  ...+...-+|+
T Consensus        24 ~PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv~Tk~D~l~GF~ef~~~L~~~~r~q~lG~  103 (266)
T PF14331_consen   24 QPLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVVFTKCDLLPGFDEFFSDLSEEEREQVLGF  103 (266)
T ss_pred             CCCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEeeeECCCcccCHHHHHHhCCHHHHhCCccc
Confidence            356999999998742     1  12222    22233344444468999999999998642100000  01111233444


Q ss_pred             cEEEEeccCCCC---HHHHHHHHHHHHHHHHhh
Q 043745          108 SFIETSALEAIN---VEKAFQTILSEIYRIISK  137 (174)
Q Consensus       108 ~~~~~Sa~~~~~---i~~v~~~l~~~i~~~~~~  137 (174)
                      .+-.........   +++.|+.+...+......
T Consensus       104 t~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  136 (266)
T PF14331_consen  104 TFPYDEDADGDAWAWFDEEFDELVARLNARVLE  136 (266)
T ss_pred             ccCCccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            322222233333   666666666666655443

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=93.94  E-value=0.41  Score=44.26  Aligned_cols=69  Identities=20%  Similarity=0.270  Sum_probs=45.4

Q ss_pred             EEEEeCCCch--------hhhhhhHHhh---------ccCCEEEEEEeCCChh-----hH----HHHHHHHHHHHhhcCC
Q 043745           21 AQIWDTAGQE--------RYRAITSAYY---------RGALGALLVYDVTKPT-----TF----ENVSRWLKELRDHADS   74 (174)
Q Consensus        21 l~l~D~~G~~--------~~~~~~~~~~---------~~~d~ii~v~d~~~~~-----s~----~~~~~~~~~i~~~~~~   74 (174)
                      -.++||+|.-        .....|..++         +..+|||+++|+.+--     ..    ..+..-+.++....+.
T Consensus       163 avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~  242 (1169)
T TIGR03348       163 AVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGA  242 (1169)
T ss_pred             EEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            4589999832        2233344443         3589999999987531     11    2334455556555566


Q ss_pred             CCeEEEEEeCCCCCC
Q 043745           75 NIVIMMIGNKTDLKH   89 (174)
Q Consensus        75 ~~piilv~nK~Dl~~   89 (174)
                      .+|+.|+.||+|+..
T Consensus       243 ~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       243 RFPVYLVLTKADLLA  257 (1169)
T ss_pred             CCCEEEEEecchhhc
Confidence            899999999999853

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=93.66  E-value=1.7  Score=30.50  Aligned_cols=84  Identities=15%  Similarity=0.061  Sum_probs=52.7

Q ss_pred             EEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHH
Q 043745           20 KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQ   99 (174)
Q Consensus        20 ~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~   99 (174)
                      .+.|+|+++....  .....+..+|.+|++.+.+. .++..+..++..+....  ...+.++.|+.+....  ...+...
T Consensus        64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~~--~~~~~~~  136 (179)
T cd02036          64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEALG--IKVVGVIVNRVRPDMV--EGGDMVE  136 (179)
T ss_pred             CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHcC--CceEEEEEeCCccccc--chhhHHH
Confidence            5789999876433  23445678999999988764 45555555555555432  2356788999986532  2222245


Q ss_pred             HHHHHhCCcEE
Q 043745          100 SYAEREGLSFI  110 (174)
Q Consensus       100 ~~~~~~~~~~~  110 (174)
                      ++.+.++.+++
T Consensus       137 ~~~~~~~~~v~  147 (179)
T cd02036         137 DIEEILGVPLL  147 (179)
T ss_pred             HHHHHhCCCEE
Confidence            55666777655

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=93.64  E-value=0.64  Score=30.23  Aligned_cols=62  Identities=21%  Similarity=0.116  Sum_probs=41.0

Q ss_pred             EEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC-CCeEEEEEeC
Q 043745           20 KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNK   84 (174)
Q Consensus        20 ~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~piilv~nK   84 (174)
                      .+.++|+++....  .....+..+|.++++.+.+ ..++..+..++..+...... ...+.+|+|+
T Consensus        44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            5789999876532  2344667899999998765 45666666666666554432 3466677775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]

Probab=93.59  E-value=1.2  Score=34.23  Aligned_cols=80  Identities=24%  Similarity=0.301  Sum_probs=54.3

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHH
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDA   98 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~   98 (174)
                      ..+.++|++.--  ....-..+.++|.+|+|-..+- -.+-+++..++...+.   ++|..+|.||.++..      .++
T Consensus       164 ~~~~IIDsaaG~--gCpVi~sl~~aD~ai~VTEPTp-~glhD~kr~~el~~~f---~ip~~iViNr~~~g~------s~i  231 (284)
T COG1149         164 ADLLIIDSAAGT--GCPVIASLKGADLAILVTEPTP-FGLHDLKRALELVEHF---GIPTGIVINRYNLGD------SEI  231 (284)
T ss_pred             cceeEEecCCCC--CChHHHhhccCCEEEEEecCCc-cchhHHHHHHHHHHHh---CCceEEEEecCCCCc------hHH
Confidence            466778875211  1223445689999999977653 3455666666655554   689999999996543      278


Q ss_pred             HHHHHHhCCcEE
Q 043745           99 QSYAEREGLSFI  110 (174)
Q Consensus        99 ~~~~~~~~~~~~  110 (174)
                      ++++++.|++++
T Consensus       232 e~~~~e~gi~il  243 (284)
T COG1149         232 EEYCEEEGIPIL  243 (284)
T ss_pred             HHHHHHcCCCee
Confidence            899999887765

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=93.28  E-value=1.3  Score=36.46  Aligned_cols=86  Identities=19%  Similarity=0.054  Sum_probs=48.1

Q ss_pred             EEEEEEEeCCCchhhhhh----hHHh--hccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCcc
Q 043745           18 TIKAQIWDTAGQERYRAI----TSAY--YRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLR   91 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~----~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~   91 (174)
                      .+.+.|+||+|.......    ...+  ....+-++||.|++-.+.-.+.   ...+....   .+--+|.||.|-... 
T Consensus       182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~---a~~F~~~~---~~~g~IlTKlD~~ar-  254 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ---AKAFKDSV---DVGSVIITKLDGHAK-  254 (429)
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH---HHHHHhcc---CCcEEEEECccCCCC-
Confidence            467899999997644321    1111  2256889999998754332221   22232221   245677899997532 


Q ss_pred             CCCHHHHHHHHHHhCCcEEEEe
Q 043745           92 AVATEDAQSYAEREGLSFIETS  113 (174)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~S  113 (174)
                         .-.+...+...+.|+.+++
T Consensus       255 ---gG~aLs~~~~t~~PI~fig  273 (429)
T TIGR01425       255 ---GGGALSAVAATKSPIIFIG  273 (429)
T ss_pred             ---ccHHhhhHHHHCCCeEEEc
Confidence               1123444555666665554

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ

Probab=93.27  E-value=1.3  Score=33.03  Aligned_cols=66  Identities=15%  Similarity=0.069  Sum_probs=42.4

Q ss_pred             EEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745           20 KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus        20 ~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      .+.|+|+++..  .......+..+|.++++...+ ..++..+...+..+........++.+|.|+.|..
T Consensus       116 D~viiD~pp~~--~~~~~~~l~~ad~vii~~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~~  181 (246)
T TIGR03371       116 DWVLIDVPRGP--SPITRQALAAADLVLVVVNAD-AACYATLHQQALALFAGSGPRIGPHFLINQFDPA  181 (246)
T ss_pred             CEEEEECCCCc--hHHHHHHHHhCCeEEEEeCCC-HHHHHHHHHHHHHHhhcccccccceEEeeccCcc
Confidence            58999999843  345556778899999999875 3455555432222222112245677889999864

Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>PRK13505 formate--tetrahydrofolate ligase; Provisional

Probab=92.79  E-value=1  Score=38.05  Aligned_cols=70  Identities=14%  Similarity=0.155  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEe--ccCCCCHHHHHHHHHHHHH
Q 043745           58 FENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETS--ALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        58 ~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~~i~~v~~~l~~~i~  132 (174)
                      +.++.+.++.++++   ++|++|++||.|...+.  ..+.+++++.+.|+++..+.  ++-|+|-.++-+.+++.+.
T Consensus       358 l~NL~RHIenvr~F---GvPvVVAINKFd~DTe~--Ei~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~  429 (557)
T PRK13505        358 FANLERHIENIRKF---GVPVVVAINKFVTDTDA--EIAALKELCEELGVEVALSEVWAKGGEGGVELAEKVVELIE  429 (557)
T ss_pred             HHHHHHHHHHHHHc---CCCEEEEEeCCCCCCHH--HHHHHHHHHHHcCCCEEEecccccCCcchHHHHHHHHHHHh
Confidence            34444455555443   79999999999986532  35678999999999877443  3555677776666665543

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=92.42  E-value=3  Score=35.49  Aligned_cols=89  Identities=17%  Similarity=0.201  Sum_probs=57.6

Q ss_pred             EECCeEE-EEEEEeCCCc-------------hhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHH-HhhcCCCCe
Q 043745           13 QVEGRTI-KAQIWDTAGQ-------------ERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKEL-RDHADSNIV   77 (174)
Q Consensus        13 ~~~~~~~-~l~l~D~~G~-------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~p   77 (174)
                      ++.|-++ +..++|.||.             +..-.+...|+.+.+++|+|+-=.+.+.-   ...+..+ .+..+.+..
T Consensus       405 tVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAE---RSnVTDLVsq~DP~GrR  481 (980)
T KOG0447|consen  405 NVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAE---RSIVTDLVSQMDPHGRR  481 (980)
T ss_pred             eecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchh---hhhHHHHHHhcCCCCCe
Confidence            3434333 5788999983             34456778899999999999853332211   1223333 233345678


Q ss_pred             EEEEEeCCCCCCccCCCHHHHHHHHHH
Q 043745           78 IMMIGNKTDLKHLRAVATEDAQSYAER  104 (174)
Q Consensus        78 iilv~nK~Dl~~~~~~~~~~~~~~~~~  104 (174)
                      .|+|.+|.|+.+..-.+...++.+.+.
T Consensus       482 TIfVLTKVDlAEknlA~PdRI~kIleG  508 (980)
T KOG0447|consen  482 TIFVLTKVDLAEKNVASPSRIQQIIEG  508 (980)
T ss_pred             eEEEEeecchhhhccCCHHHHHHHHhc
Confidence            999999999987655566777776653

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

Probab=92.06  E-value=2.5  Score=29.66  Aligned_cols=88  Identities=10%  Similarity=0.109  Sum_probs=54.6

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc-----
Q 043745           18 TIKAQIWDTAGQERYRAITSAYY--RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL-----   90 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~-----   90 (174)
                      .+.+.|+|+++...  ......+  ..+|.++++...+ ..+...+..++..+.+...  ..+-+|.|+.+....     
T Consensus        67 ~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~~~--~~~gvv~N~~~~~~~~~~~~  141 (169)
T cd02037          67 ELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQ-EVALDDVRKAIDMFKKVNI--PILGVVENMSYFVCPHCGKK  141 (169)
T ss_pred             CCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCc-hhhHHHHHHHHHHHHhcCC--CeEEEEEcCCcccCCCCCCc
Confidence            46689999998642  1112222  5789999998765 4567777777777766532  234577899875211     


Q ss_pred             cCC-CHHHHHHHHHHhCCcEE
Q 043745           91 RAV-ATEDAQSYAEREGLSFI  110 (174)
Q Consensus        91 ~~~-~~~~~~~~~~~~~~~~~  110 (174)
                      ... .....+++++.++.+++
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~  162 (169)
T cd02037         142 IYIFGKGGGEKLAEELGVPLL  162 (169)
T ss_pred             ccccCCccHHHHHHHcCCCEE
Confidence            111 23466778888776654

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.

>TIGR00959 ffh signal recognition particle protein

Probab=92.01  E-value=1.6  Score=35.96  Aligned_cols=86  Identities=19%  Similarity=0.087  Sum_probs=49.8

Q ss_pred             EEEEEEeCCCchhhhhh----hHHh--hccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC
Q 043745           19 IKAQIWDTAGQERYRAI----TSAY--YRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA   92 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~----~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~   92 (174)
                      +.+.|+||+|.......    ...+  .-..+.++||+|....+   ....+...+....  ++ .=+|.||.|-...  
T Consensus       183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v--~i-~giIlTKlD~~~~--  254 (428)
T TIGR00959       183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL--GL-TGVVLTKLDGDAR--  254 (428)
T ss_pred             CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC--CC-CEEEEeCccCccc--
Confidence            56899999996433211    1111  22578899999987543   3333333333222  12 2456799996431  


Q ss_pred             CCHHHHHHHHHHhCCcEEEEec
Q 043745           93 VATEDAQSYAEREGLSFIETSA  114 (174)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~Sa  114 (174)
                        .-.+...+...++|+.++..
T Consensus       255 --~G~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       255 --GGAALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             --ccHHHHHHHHHCcCEEEEeC
Confidence              22366777778888877654

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=92.01  E-value=3.8  Score=34.81  Aligned_cols=95  Identities=16%  Similarity=0.154  Sum_probs=55.2

Q ss_pred             EEEEEEEeCCCchhhhhhhHH---hh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC
Q 043745           18 TIKAQIWDTAGQERYRAITSA---YY--RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA   92 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~---~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~   92 (174)
                      .+.+.|+||+|..........   .+  ......++|++...  +...+...+..+...    .+.-+|+||.|...   
T Consensus       428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~~----~~~gvILTKlDEt~---  498 (559)
T PRK12727        428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAHA----KPQGVVLTKLDETG---  498 (559)
T ss_pred             cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHhh----CCeEEEEecCcCcc---
Confidence            356899999996533221100   01  11235677777764  334444444444332    35568889999743   


Q ss_pred             CCHHHHHHHHHHhCCcEEEEeccCCCCH-HHHH
Q 043745           93 VATEDAQSYAEREGLSFIETSALEAINV-EKAF  124 (174)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~v~  124 (174)
                       ..-.........++++.+++  +|+.+ +++.
T Consensus       499 -~lG~aLsv~~~~~LPI~yvt--~GQ~VPeDL~  528 (559)
T PRK12727        499 -RFGSALSVVVDHQMPITWVT--DGQRVPDDLH  528 (559)
T ss_pred             -chhHHHHHHHHhCCCEEEEe--CCCCchhhhh
Confidence             24566777778889988776  56666 4543

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=91.97  E-value=2.2  Score=36.38  Aligned_cols=71  Identities=17%  Similarity=0.139  Sum_probs=47.4

Q ss_pred             EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      .+.|+.-++.|++++  ++...+++. .+-+|.+++++|..-.-.. ...++++.+..+..  ..++-|+++.||..
T Consensus       107 vvsgK~RRiTflEcp--~Dl~~miDv-aKIaDLVlLlIdgnfGfEM-ETmEFLnil~~HGm--PrvlgV~ThlDlfk  177 (1077)
T COG5192         107 VVSGKTRRITFLECP--SDLHQMIDV-AKIADLVLLLIDGNFGFEM-ETMEFLNILISHGM--PRVLGVVTHLDLFK  177 (1077)
T ss_pred             EeecceeEEEEEeCh--HHHHHHHhH-HHhhheeEEEeccccCcee-hHHHHHHHHhhcCC--CceEEEEeeccccc
Confidence            356777789999988  444555443 4679999999997632111 12345666666543  35888999999975

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=91.89  E-value=1.3  Score=34.27  Aligned_cols=94  Identities=15%  Similarity=0.243  Sum_probs=46.7

Q ss_pred             EECCeEEEEEEEeCCCchh-------hhhh-------hHHhh-------------ccCCEEEEEEeCCChhhHHHH-HHH
Q 043745           13 QVEGRTIKAQIWDTAGQER-------YRAI-------TSAYY-------------RGALGALLVYDVTKPTTFENV-SRW   64 (174)
Q Consensus        13 ~~~~~~~~l~l~D~~G~~~-------~~~~-------~~~~~-------------~~~d~ii~v~d~~~~~s~~~~-~~~   64 (174)
                      .-++..+.+.|+||+|..+       +..+       ...++             .+.|+++++++.+.. .+..+ ...
T Consensus        57 ~e~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di~~  135 (281)
T PF00735_consen   57 EENGVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDIEF  135 (281)
T ss_dssp             EETCEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHHHH
T ss_pred             ccCCcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHHHH
Confidence            3477788999999999221       1000       01111             146899999998642 11121 134


Q ss_pred             HHHHHhhcCCCCeEEEEEeCCCCCCccCC--CHHHHHHHHHHhCCcEEE
Q 043745           65 LKELRDHADSNIVIMMIGNKTDLKHLRAV--ATEDAQSYAEREGLSFIE  111 (174)
Q Consensus        65 ~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~  111 (174)
                      |..+..    .+++|-|+.|.|.-...++  -.+.+..-+...++.++.
T Consensus       136 mk~Ls~----~vNvIPvIaKaD~lt~~el~~~k~~i~~~l~~~~I~~f~  180 (281)
T PF00735_consen  136 MKRLSK----RVNVIPVIAKADTLTPEELQAFKQRIREDLEENNIKIFD  180 (281)
T ss_dssp             HHHHTT----TSEEEEEESTGGGS-HHHHHHHHHHHHHHHHHTT--S--
T ss_pred             HHHhcc----cccEEeEEecccccCHHHHHHHHHHHHHHHHHcCceeec
Confidence            454433    5789999999998542221  112233334555666554

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=91.79  E-value=1  Score=32.83  Aligned_cols=93  Identities=18%  Similarity=0.107  Sum_probs=54.2

Q ss_pred             EEEEEEeCCCchhhhh----hhHHhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC
Q 043745           19 IKAQIWDTAGQERYRA----ITSAYYR--GALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA   92 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~----~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~   92 (174)
                      +.+.|+||+|...+..    .+..++.  ..+-+++|.|++..+.  .+..+.. +....+  +- =+|.||.|-..   
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~~~~~-~~~~~~--~~-~lIlTKlDet~---  154 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLEQALA-FYEAFG--ID-GLILTKLDETA---  154 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHHHHHH-HHHHSS--TC-EEEEESTTSSS---
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHHHHHH-Hhhccc--Cc-eEEEEeecCCC---
Confidence            4579999999654432    1222221  5778999999986532  2222222 222221  12 34579999643   


Q ss_pred             CCHHHHHHHHHHhCCcEEEEeccCCCCHHHH
Q 043745           93 VATEDAQSYAEREGLSFIETSALEAINVEKA  123 (174)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v  123 (174)
                       ..-.+..++...++|+-.++  +|++++++
T Consensus       155 -~~G~~l~~~~~~~~Pi~~it--~Gq~V~Dl  182 (196)
T PF00448_consen  155 -RLGALLSLAYESGLPISYIT--TGQRVDDL  182 (196)
T ss_dssp             -TTHHHHHHHHHHTSEEEEEE--SSSSTTGE
T ss_pred             -CcccceeHHHHhCCCeEEEE--CCCChhcC
Confidence             23567777888899988776  56666443

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=91.75  E-value=3.2  Score=30.39  Aligned_cols=89  Identities=18%  Similarity=0.152  Sum_probs=51.7

Q ss_pred             EEEEEEEeCCCchhhhhhh-HHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCe-EEEEEeCCCCCCccCCC
Q 043745           18 TIKAQIWDTAGQERYRAIT-SAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIV-IMMIGNKTDLKHLRAVA   94 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p-iilv~nK~Dl~~~~~~~   94 (174)
                      .+-+.++|++|.-...... ....+.+|.++++++.+ ..++..+...+..+..... .+.+ ..++.|+.+..    ..
T Consensus       116 ~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~----~~  190 (212)
T cd02117         116 DLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGE-FMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD----RE  190 (212)
T ss_pred             CCCEEEEecCCCceecccccccccccCcEEEEEeccc-HHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc----cH
Confidence            4678899997654322221 11124799999999764 3445444444444433322 1333 45888999854    23


Q ss_pred             HHHHHHHHHHhCCcEEE
Q 043745           95 TEDAQSYAEREGLSFIE  111 (174)
Q Consensus        95 ~~~~~~~~~~~~~~~~~  111 (174)
                      .+...++.+.++.+++.
T Consensus       191 ~~~~~~~~~~~~~~vl~  207 (212)
T cd02117         191 TELIDAFAERLGTQVIH  207 (212)
T ss_pred             HHHHHHHHHHcCCCEEE
Confidence            45567777877776554

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>TIGR01968 minD_bact septum site-determining protein MinD

Probab=91.34  E-value=2.8  Score=31.37  Aligned_cols=64  Identities=16%  Similarity=0.017  Sum_probs=42.5

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL   87 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl   87 (174)
                      +.+.|+|+++.-..  .....+..+|.+|++...+ ..++..+...+..+....  ..++.++.|+.+.
T Consensus       112 ~D~viiD~p~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~iviN~~~~  175 (261)
T TIGR01968       112 FDYVIIDCPAGIES--GFRNAVAPADEAIVVTTPE-VSAVRDADRVIGLLEAKG--IEKIHLIVNRLRP  175 (261)
T ss_pred             CCEEEEeCCCCcCH--HHHHHHHhCCeEEEEcCCC-cHHHHHHHHHHHHHHHcC--CCceEEEEeCcCc
Confidence            56789999875432  2334567899999998875 455666666665555433  2357778899875

This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=90.49  E-value=2  Score=33.95  Aligned_cols=98  Identities=16%  Similarity=0.164  Sum_probs=55.2

Q ss_pred             EEEEEEeCCCchhhhhhhHHhh--------ccCCEEEEEEeCCChhhHHH-HHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           19 IKAQIWDTAGQERYRAITSAYY--------RGALGALLVYDVTKPTTFEN-VSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      +-..++++.|...=......++        -..|+++-|+|+.+-..... +.+.+.......     =+|++||.|+.+
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A-----D~ivlNK~Dlv~  159 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA-----DVIVLNKTDLVD  159 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC-----cEEEEecccCCC
Confidence            4457788888543222222222        14688999999987533222 323222222222     267789999987


Q ss_pred             ccCCCHHHHHHHHHHhC--CcEEEEeccCCCCHHHHH
Q 043745           90 LRAVATEDAQSYAEREG--LSFIETSALEAINVEKAF  124 (174)
Q Consensus        90 ~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~v~  124 (174)
                      +.+  .+..+...++++  .++++++. .+.+..+++
T Consensus       160 ~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll  193 (323)
T COG0523         160 AEE--LEALEARLRKLNPRARIIETSY-GDVDLAELL  193 (323)
T ss_pred             HHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence            442  455666667665  67888776 334444333

>cd03112 CobW_like The function of this protein family is unkown

Probab=90.46  E-value=1.3  Score=31.08  Aligned_cols=64  Identities=14%  Similarity=0.094  Sum_probs=36.7

Q ss_pred             EEEEEEEeCCCchhhhhhhHH--------hhccCCEEEEEEeCCChhhHH-HHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745           18 TIKAQIWDTAGQERYRAITSA--------YYRGALGALLVYDVTKPTTFE-NVSRWLKELRDHADSNIVIMMIGNKTDL   87 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~--------~~~~~d~ii~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~piilv~nK~Dl   87 (174)
                      .....|.|++|..+-......        ..-..|++++++|+.+..... ....+..++...     - ++|.||+|+
T Consensus        86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a-----d-~ivlnk~dl  158 (158)
T cd03112          86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA-----D-RILLNKTDL  158 (158)
T ss_pred             CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC-----C-EEEEecccC
Confidence            456788999997532222211        233589999999986543221 122334444322     2 457899996

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=90.41  E-value=3.8  Score=33.83  Aligned_cols=85  Identities=20%  Similarity=0.074  Sum_probs=48.8

Q ss_pred             EEEEEeCCCchhhhhh----hH--HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC
Q 043745           20 KAQIWDTAGQERYRAI----TS--AYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV   93 (174)
Q Consensus        20 ~l~l~D~~G~~~~~~~----~~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~   93 (174)
                      .+.|+||+|+......    ..  ..+-.+|.+++|+|++..+   +.......+....  + ..-+|.||.|-...   
T Consensus       177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l--~-i~gvIlTKlD~~a~---  247 (437)
T PRK00771        177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV--G-IGGIIITKLDGTAK---  247 (437)
T ss_pred             CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC--C-CCEEEEecccCCCc---
Confidence            6899999997654321    11  1133688999999987653   2212222222211  1 23466799996431   


Q ss_pred             CHHHHHHHHHHhCCcEEEEec
Q 043745           94 ATEDAQSYAEREGLSFIETSA  114 (174)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~Sa  114 (174)
                       .-.+...+...+.|+.+++.
T Consensus       248 -~G~~ls~~~~~~~Pi~fig~  267 (437)
T PRK00771        248 -GGGALSAVAETGAPIKFIGT  267 (437)
T ss_pred             -ccHHHHHHHHHCcCEEEEec
Confidence             23455666677777776653

>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional

Probab=90.27  E-value=3.4  Score=31.38  Aligned_cols=84  Identities=18%  Similarity=0.180  Sum_probs=48.7

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeE-EEEEeCCCCCCccCCCH
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVI-MMIGNKTDLKHLRAVAT   95 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi-ilv~nK~Dl~~~~~~~~   95 (174)
                      .+.+.|+|++|.-.... ....+..+|.+|++... +..++..+...+..+.... ..++++ .++.|+.+.       .
T Consensus       117 ~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~-~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~-------~  187 (270)
T PRK13185        117 DYDVILFDVLGDVVCGG-FAAPLQYADYALIVTAN-DFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG-------T  187 (270)
T ss_pred             cCCEEEEecCCCcccCc-ccchhhhCcEEEEEecC-chhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh-------H
Confidence            46789999977543222 22335679999998865 4445555555444443221 235664 377899762       2


Q ss_pred             HHHHHHHHHhCCcEE
Q 043745           96 EDAQSYAEREGLSFI  110 (174)
Q Consensus        96 ~~~~~~~~~~~~~~~  110 (174)
                      ...+++.+.++.+++
T Consensus       188 ~~~~~~~~~~g~~vl  202 (270)
T PRK13185        188 DLIDKFNEAVGLKVL  202 (270)
T ss_pred             HHHHHHHHHcCCCEE
Confidence            344566666665443

>PRK13849 putative crown gall tumor protein VirC1; Provisional

Probab=90.04  E-value=3.8  Score=30.68  Aligned_cols=66  Identities=9%  Similarity=0.049  Sum_probs=42.8

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHH---hhcCCCCeEEEEEeCCC
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR---DHADSNIVIMMIGNKTD   86 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~---~~~~~~~piilv~nK~D   86 (174)
                      .+.+.|+|++|...  ......+..+|.+|+.+..+. .++..+..++..+.   .....+.+..++.|..+
T Consensus        83 ~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~-~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~  151 (231)
T PRK13849         83 GFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTP-LDIDEALSTYRYVIELLLSENLAIPTAILRQRVP  151 (231)
T ss_pred             CCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcH-HHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence            46789999999774  445556778999998877643 33444433333322   22234678888999886

>cd03114 ArgK-like The function of this protein family is unkown

Probab=89.28  E-value=1.8  Score=30.05  Aligned_cols=58  Identities=16%  Similarity=0.142  Sum_probs=36.0

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTD   86 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D   86 (174)
                      .+.+.|.||+|.....   ..++..+|-++++...+-.+.+.-++.  ..+ .     .-=++++||+|
T Consensus        91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~-~-----~~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIKA--GIM-E-----IADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhhh--hHh-h-----hcCEEEEeCCC
Confidence            4668999999965322   347888999999988763333332221  111 1     22367789987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=89.03  E-value=3.8  Score=26.04  Aligned_cols=45  Identities=18%  Similarity=0.127  Sum_probs=31.1

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHH
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLK   66 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~   66 (174)
                      +.+.++|+++.....  ....+..+|.++++.+.+ ..++..+..+++
T Consensus        40 ~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~-~~s~~~~~~~~~   84 (104)
T cd02042          40 YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPS-PLDLDGLEKLLE   84 (104)
T ss_pred             CCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCC-HHHHHHHHHHHH
Confidence            567899998865322  236677899999999864 456666666555

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=88.94  E-value=6.7  Score=28.02  Aligned_cols=106  Identities=19%  Similarity=0.250  Sum_probs=55.6

Q ss_pred             EEEECCeEEEEEEEeCC-Cch--------------hh-------h----hhhHHhhccCCEEEEEEeCCChhhHHH-HHH
Q 043745           11 DFQVEGRTIKAQIWDTA-GQE--------------RY-------R----AITSAYYRGALGALLVYDVTKPTTFEN-VSR   63 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~-G~~--------------~~-------~----~~~~~~~~~~d~ii~v~d~~~~~s~~~-~~~   63 (174)
                      ++.-+|..+-+.+.|+. |..              +|       .    ......++.||++|+  |=--+  .+. .+.
T Consensus        43 EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIII--DEIGp--MElks~~  118 (179)
T COG1618          43 EVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEGLEEIAIPALRRALEEADVIII--DEIGP--MELKSKK  118 (179)
T ss_pred             eeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEE--ecccc--hhhccHH
Confidence            55667888888888876 311              11       1    123444566787663  32211  111 133


Q ss_pred             HHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           64 WLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        64 ~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      +...+......+.|+|.+..+.+..+       -++++ ..++..+++   .+..|-+.+++.+++.+
T Consensus       119 f~~~ve~vl~~~kpliatlHrrsr~P-------~v~~i-k~~~~v~v~---lt~~NR~~i~~~Il~~L  175 (179)
T COG1618         119 FREAVEEVLKSGKPLIATLHRRSRHP-------LVQRI-KKLGGVYVF---LTPENRNRILNEILSVL  175 (179)
T ss_pred             HHHHHHHHhcCCCcEEEEEecccCCh-------HHHHh-hhcCCEEEE---EccchhhHHHHHHHHHh
Confidence            44444444445788887777665422       23332 333333333   45667777777776654

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=88.80  E-value=6.4  Score=27.64  Aligned_cols=83  Identities=20%  Similarity=0.057  Sum_probs=46.0

Q ss_pred             EEEEEEeCCCchhhh----hhhHHhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC
Q 043745           19 IKAQIWDTAGQERYR----AITSAYY--RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA   92 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~----~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~   92 (174)
                      ..+.+.|++|...+.    .....+.  ...+.+++|+|....++.   ..+...+....  ++ .-+|.||.|....  
T Consensus        83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~---~~~~~~~~~~~--~~-~~viltk~D~~~~--  154 (173)
T cd03115          83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA---VNQAKAFNEAL--GI-TGVILTKLDGDAR--  154 (173)
T ss_pred             CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH---HHHHHHHHhhC--CC-CEEEEECCcCCCC--
Confidence            457889999974221    1112222  248999999998654322   22333333322  22 4566699997542  


Q ss_pred             CCHHHHHHHHHHhCCcEEE
Q 043745           93 VATEDAQSYAEREGLSFIE  111 (174)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~  111 (174)
                        .......+...++|+..
T Consensus       155 --~g~~~~~~~~~~~p~~~  171 (173)
T cd03115         155 --GGAALSIRAVTGKPIKF  171 (173)
T ss_pred             --cchhhhhHHHHCcCeEe
Confidence              22333367777777654

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.79  E-value=3.3  Score=38.33  Aligned_cols=69  Identities=26%  Similarity=0.280  Sum_probs=41.9

Q ss_pred             EEEEeCCCch--------hhhhhhHHh---------hccCCEEEEEEeCCChh----hHH--HHHHH---HHHHHhhcCC
Q 043745           21 AQIWDTAGQE--------RYRAITSAY---------YRGALGALLVYDVTKPT----TFE--NVSRW---LKELRDHADS   74 (174)
Q Consensus        21 l~l~D~~G~~--------~~~~~~~~~---------~~~~d~ii~v~d~~~~~----s~~--~~~~~---~~~i~~~~~~   74 (174)
                      -.++||+|..        .-...|..+         .+..+|||+..|+.+--    ...  .+..+   +.++.....-
T Consensus       176 aVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~  255 (1188)
T COG3523         176 AVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHA  255 (1188)
T ss_pred             eEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4688998832        122344433         34689999999997521    111  11112   3334444445


Q ss_pred             CCeEEEEEeCCCCCC
Q 043745           75 NIVIMMIGNKTDLKH   89 (174)
Q Consensus        75 ~~piilv~nK~Dl~~   89 (174)
                      .+|++|+.||.|+..
T Consensus       256 ~~PVYl~lTk~Dll~  270 (1188)
T COG3523         256 RLPVYLVLTKADLLP  270 (1188)
T ss_pred             CCceEEEEecccccc
Confidence            799999999999864

>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases

Probab=88.42  E-value=1.2  Score=31.71  Aligned_cols=68  Identities=15%  Similarity=0.086  Sum_probs=47.9

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      +.+.|+|+++.....  ....+..+|.+|++.+.+. .+...+..++..+.........+.+|.|+.+..+
T Consensus        95 yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~-~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~~  162 (195)
T PF01656_consen   95 YDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDP-SSIEGAERLIELLKRLGKKLKIIGVVINRVDPGN  162 (195)
T ss_dssp             SSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSH-HHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSCC
T ss_pred             ccceeecccccccHH--HHHHHHhCceeeeecCCcH-HHHHHHHHHHHHHHHhccccceEEEEEeeeCCCc
Confidence            457899998755333  5556778999999999865 4466677777776655432235678899998764

These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=87.90  E-value=7  Score=31.43  Aligned_cols=92  Identities=14%  Similarity=0.181  Sum_probs=51.2

Q ss_pred             CCeEEEEEEEeCCCchhh--------------hhhhHHhh--------------ccCCEEEEEEeCCChhhHHHH-HHHH
Q 043745           15 EGRTIKAQIWDTAGQERY--------------RAITSAYY--------------RGALGALLVYDVTKPTTFENV-SRWL   65 (174)
Q Consensus        15 ~~~~~~l~l~D~~G~~~~--------------~~~~~~~~--------------~~~d~ii~v~d~~~~~s~~~~-~~~~   65 (174)
                      ++..+.|++.||||--++              ....+.|+              .+.|++++....+.- .+..+ -+.|
T Consensus        78 ~~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~M  156 (373)
T COG5019          78 DGFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAM  156 (373)
T ss_pred             CCeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHH
Confidence            677788999999993211              11122222              146899999886642 22222 2344


Q ss_pred             HHHHhhcCCCCeEEEEEeCCCCCCccCC--CHHHHHHHHHHhCCcEEE
Q 043745           66 KELRDHADSNIVIMMIGNKTDLKHLRAV--ATEDAQSYAEREGLSFIE  111 (174)
Q Consensus        66 ~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~  111 (174)
                      ..+...    +-+|-|+.|.|.-...++  ..+.+.+.....++++|.
T Consensus       157 k~ls~~----vNlIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~  200 (373)
T COG5019         157 KRLSKR----VNLIPVIAKADTLTDDELAEFKERIREDLEQYNIPVFD  200 (373)
T ss_pred             HHHhcc----cCeeeeeeccccCCHHHHHHHHHHHHHHHHHhCCceeC
Confidence            555443    557777799998543221  123344445556666663

>PRK10818 cell division inhibitor MinD; Provisional

Probab=87.87  E-value=6.1  Score=29.99  Aligned_cols=68  Identities=10%  Similarity=0.038  Sum_probs=42.3

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc------CCCCeEEEEEeCCCCC
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA------DSNIVIMMIGNKTDLK   88 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~------~~~~piilv~nK~Dl~   88 (174)
                      .+.+.++|+++.-...  ....+..+|.++++.+.+ ..++..+..++..+....      ..+....++.|..|..
T Consensus       113 ~yd~viiD~p~~~~~~--~~~~l~~ad~vivv~~p~-~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~  186 (270)
T PRK10818        113 DFEFIVCDSPAGIETG--ALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG  186 (270)
T ss_pred             CCCEEEEeCCCCccHH--HHHHHHhCCeEEEEcCCC-chHHHhHHHHHHHHHHhhccccccccccceEEEEeccCHh
Confidence            4678999998765332  333467899999998876 345555555555543211      1123456788988753

>CHL00175 minD septum-site determining protein; Validated

Probab=87.87  E-value=6.9  Score=29.95  Aligned_cols=65  Identities=12%  Similarity=-0.007  Sum_probs=41.0

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL   87 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl   87 (174)
                      .+.+.|+|+++.-.  ......+..+|.+++|.+.+ ..++..+...+..+.....  ..+.++.|+.+.
T Consensus       126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~-~~si~~~~~~~~~l~~~~~--~~~~lvvN~~~~  190 (281)
T CHL00175        126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPE-ITAIRDADRVAGLLEANGI--YNVKLLVNRVRP  190 (281)
T ss_pred             CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCC-hHHHHHHHHHHHHHHHcCC--CceEEEEeccCh
Confidence            45689999987542  23344556799999988754 3455555555555544322  235677799874

>PRK10867 signal recognition particle protein; Provisional

Probab=87.63  E-value=4.8  Score=33.24  Aligned_cols=86  Identities=20%  Similarity=0.069  Sum_probs=48.2

Q ss_pred             EEEEEEeCCCchhhhhh----hHHh--hccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC
Q 043745           19 IKAQIWDTAGQERYRAI----TSAY--YRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA   92 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~----~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~   92 (174)
                      +.+.|+||+|.......    ...+  .-..+.++||.|....+   ++......+....  ++ .-+|.||.|-...  
T Consensus       184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~--~i-~giIlTKlD~~~r--  255 (433)
T PRK10867        184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL--GL-TGVILTKLDGDAR--  255 (433)
T ss_pred             CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC--CC-CEEEEeCccCccc--
Confidence            56899999996532211    1111  12567889999987542   2222233333221  12 2456699996431  


Q ss_pred             CCHHHHHHHHHHhCCcEEEEec
Q 043745           93 VATEDAQSYAEREGLSFIETSA  114 (174)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~Sa  114 (174)
                        .-.+.......++|+.+++.
T Consensus       256 --gG~alsi~~~~~~PI~fig~  275 (433)
T PRK10867        256 --GGAALSIRAVTGKPIKFIGT  275 (433)
T ss_pred             --ccHHHHHHHHHCcCEEEEeC
Confidence              12356667778888777654

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=87.17  E-value=4.9  Score=30.23  Aligned_cols=103  Identities=13%  Similarity=0.125  Sum_probs=60.3

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCH
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFE--NVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVAT   95 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~   95 (174)
                      .+.+.|.|+.|...  .+....+..+|.+|+=.-.+..+.-+  ....|+..+......++|.-|+.|+..-.. .....
T Consensus        83 ~~d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~-~~~~~  159 (231)
T PF07015_consen   83 GFDFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAAR-LTRAQ  159 (231)
T ss_pred             CCCEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcch-hhHHH
Confidence            35688999987652  23455566799988877665433222  334566666554456799999999987431 11112


Q ss_pred             HHHHHHHHHhCCcEEEEeccCCCCHHHHHH
Q 043745           96 EDAQSYAEREGLSFIETSALEAINVEKAFQ  125 (174)
Q Consensus        96 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~  125 (174)
                      ....++..  +++++.+.-.......++|.
T Consensus       160 ~~~~e~~~--~lpvl~t~l~eR~Af~~m~~  187 (231)
T PF07015_consen  160 RIISEQLE--SLPVLDTELHERDAFRAMFS  187 (231)
T ss_pred             HHHHHHHh--cCCccccccccHHHHHHHHH
Confidence            22333333  47887766554444444433

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=86.66  E-value=17  Score=30.02  Aligned_cols=96  Identities=18%  Similarity=0.158  Sum_probs=56.3

Q ss_pred             EEEEEEeCCCchhhh----hhhHHhhc---cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCcc
Q 043745           19 IKAQIWDTAGQERYR----AITSAYYR---GALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLR   91 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~----~~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~   91 (174)
                      ..+.|+||+|.....    .....++.   ...-+++|++.+-.  ...+...+..+...   + +--+|.||.|-..  
T Consensus       300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~---~-~~~vI~TKlDet~--  371 (424)
T PRK05703        300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL---P-LDGLIFTKLDETS--  371 (424)
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC---C-CCEEEEecccccc--
Confidence            568999999975432    12333333   23467788888643  23333333333321   1 1246789999643  


Q ss_pred             CCCHHHHHHHHHHhCCcEEEEeccCCCCH-HHHHHH
Q 043745           92 AVATEDAQSYAEREGLSFIETSALEAINV-EKAFQT  126 (174)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~v~~~  126 (174)
                        ..-.+..++...++++..++  +|+++ +++...
T Consensus       372 --~~G~i~~~~~~~~lPv~yit--~Gq~VpdDl~~a  403 (424)
T PRK05703        372 --SLGSILSLLIESGLPISYLT--NGQRVPDDIKVA  403 (424)
T ss_pred             --cccHHHHHHHHHCCCEEEEe--CCCCChhhhhhC
Confidence              23467778888899988776  56664 555433

>TIGR02016 BchX chlorophyllide reductase iron protein subunit X

Probab=86.29  E-value=14  Score=28.79  Aligned_cols=111  Identities=14%  Similarity=0.144  Sum_probs=59.5

Q ss_pred             EEEEEEEeCCCchhh-hhhhHHhhccCCEEEEEEeCCChhhH---HHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC
Q 043745           18 TIKAQIWDTAGQERY-RAITSAYYRGALGALLVYDVTKPTTF---ENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV   93 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~-~~~~~~~~~~~d~ii~v~d~~~~~s~---~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~   93 (174)
                      .+.+.|+|++|.-.- ..........+|.+|++.+.+ ..++   ..+...+..+......-.++.+|.|+.+...    
T Consensus       122 ~yD~IliD~~~~~~~~g~~~~~a~~~Ad~viVvt~~e-~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~~~----  196 (296)
T TIGR02016       122 DFDFVLMDFLGDVVCGGFATPLARSLAEEVIVIGSND-RQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDGSG----  196 (296)
T ss_pred             cCCEEEEecCCCccccccccchhhhhCCeEEEEecch-HHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCCcc----
Confidence            577899998664210 111122223688888887653 3344   3444444544443211224668889987522    


Q ss_pred             CHHHHHHHHHHhCCcEEEEec----------------cCCC-CHHHHHHHHHHHHHHHHh
Q 043745           94 ATEDAQSYAEREGLSFIETSA----------------LEAI-NVEKAFQTILSEIYRIIS  136 (174)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~Sa----------------~~~~-~i~~v~~~l~~~i~~~~~  136 (174)
                         ..++++++++++++..-.                .... ...+.|..+.+.+.....
T Consensus       197 ---~~~~~~~~~~i~vLg~IP~d~~i~~~~~~~~~~~~~~~~~~~~~f~~la~~i~~~~~  253 (296)
T TIGR02016       197 ---EAQAFAREVGIPVLAAIPADEELRRKSLAYQIVGSHATPRFGKLFEELAGNVADAPP  253 (296)
T ss_pred             ---HHHHHHHHcCCCeEEECCCCHHHHHHhcCCCeeecCCCHHHHHHHHHHHHHHHHhcC
Confidence               446667777765442110                1111 256778888887776544

This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.

>cd02032 Bchl_like This family of proteins contains bchL and chlL

Probab=85.85  E-value=9.5  Score=28.94  Aligned_cols=68  Identities=22%  Similarity=0.196  Sum_probs=38.7

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeE-EEEEeCCCC
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVI-MMIGNKTDL   87 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi-ilv~nK~Dl   87 (174)
                      ++.+.|+|++|...... ....+..+|.+|++...+ ..++..+...+..+.... ..+.++ .+|.|+.+.
T Consensus       115 ~yD~vIIDt~g~~~~~~-~~~al~~aD~vlip~~p~-~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~  184 (267)
T cd02032         115 EYDVILFDVLGDVVCGG-FAAPLNYADYALIVTDND-FDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK  184 (267)
T ss_pred             cCCEEEEeCCCCccccc-chhhhhhcCEEEEEecCC-cccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence            46689999977543221 222367899999988764 334444444333332211 124543 467899874

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=85.51  E-value=7.6  Score=31.71  Aligned_cols=95  Identities=18%  Similarity=0.157  Sum_probs=57.8

Q ss_pred             EEEEEEeCCCchhhhhh----hHHhhcc--CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC
Q 043745           19 IKAQIWDTAGQERYRAI----TSAYYRG--ALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA   92 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~----~~~~~~~--~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~   92 (174)
                      +.+.|+||.|+..+...    ...++..  ..-+.||++++..  .+.+++.+..+....-   - =++.||.|=.    
T Consensus       282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~~i---~-~~I~TKlDET----  351 (407)
T COG1419         282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLFPI---D-GLIFTKLDET----  351 (407)
T ss_pred             CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccCCc---c-eeEEEccccc----
Confidence            46899999998766432    3334332  3456677787753  4556666666654422   2 2456999953    


Q ss_pred             CCHHHHHHHHHHhCCcEEEEeccCCCCH-HHHHH
Q 043745           93 VATEDAQSYAEREGLSFIETSALEAINV-EKAFQ  125 (174)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~v~~  125 (174)
                      .+.-....+..+.+.|+..++  +|++| ++++.
T Consensus       352 ~s~G~~~s~~~e~~~PV~YvT--~GQ~VPeDI~v  383 (407)
T COG1419         352 TSLGNLFSLMYETRLPVSYVT--NGQRVPEDIVV  383 (407)
T ss_pred             CchhHHHHHHHHhCCCeEEEe--CCCCCCchhhh
Confidence            345566677777888876665  45543 34443

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=85.11  E-value=8.6  Score=34.13  Aligned_cols=104  Identities=19%  Similarity=0.127  Sum_probs=58.5

Q ss_pred             EEEEEeCCCchhhhh----hhHHh--hccCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC
Q 043745           20 KAQIWDTAGQERYRA----ITSAY--YRGALGALLVYDVTKP-TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA   92 (174)
Q Consensus        20 ~l~l~D~~G~~~~~~----~~~~~--~~~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~   92 (174)
                      .+.|+||+|......    .....  ....+-+++|.|.+.. +.+.++   +..+......+ +-=+|.||.|-..   
T Consensus       265 D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i---~~~f~~~~~~~-i~glIlTKLDEt~---  337 (767)
T PRK14723        265 HLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEV---VHAYRHGAGED-VDGCIITKLDEAT---  337 (767)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHH---HHHHhhcccCC-CCEEEEeccCCCC---
Confidence            589999999543221    11111  1235678899998753 344433   33332221101 2235679999643   


Q ss_pred             CCHHHHHHHHHHhCCcEEEEeccCCCCH-HHHHHHHHHHHHH
Q 043745           93 VATEDAQSYAEREGLSFIETSALEAINV-EKAFQTILSEIYR  133 (174)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~v~~~l~~~i~~  133 (174)
                       ..-.+..+....++++.+++  +|++| +++...-.+.+.+
T Consensus       338 -~~G~iL~i~~~~~lPI~yit--~GQ~VPdDL~~a~~~~lv~  376 (767)
T PRK14723        338 -HLGPALDTVIRHRLPVHYVS--TGQKVPEHLELAQADELVD  376 (767)
T ss_pred             -CccHHHHHHHHHCCCeEEEe--cCCCChhhcccCCHHHHHH
Confidence             23456677788899988876  57777 6664433333333

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=84.44  E-value=9.3  Score=30.17  Aligned_cols=95  Identities=12%  Similarity=0.103  Sum_probs=51.6

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhc--------cCCEEEEEEeCCChhhHH-HHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           19 IKAQIWDTAGQERYRAITSAYYR--------GALGALLVYDVTKPTTFE-NVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      ....++++.|..+-..+...++.        ..++++.|+|+.+..... .......++..      -=+|+.||+|+..
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~------AD~IvlnK~Dl~~  164 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY------ADRILLTKTDVAG  164 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh------CCEEEEeccccCC
Confidence            34577888887654444433322        358999999997632211 11112223322      1256779999975


Q ss_pred             ccCCCHHHHHHHHHHhC--CcEEEEeccCCCCHHHHH
Q 043745           90 LRAVATEDAQSYAEREG--LSFIETSALEAINVEKAF  124 (174)
Q Consensus        90 ~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~v~  124 (174)
                      .    .+......+.++  .+++.++ ........+|
T Consensus       165 ~----~~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~  196 (318)
T PRK11537        165 E----AEKLRERLARINARAPVYTVV-HGDIDLSLLF  196 (318)
T ss_pred             H----HHHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence            2    245556666554  5666544 2223444444

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=84.43  E-value=0.87  Score=36.51  Aligned_cols=40  Identities=13%  Similarity=0.157  Sum_probs=31.1

Q ss_pred             CCeEEEEEeCCCCCCccCCC--HHHHHHHHHHhCCcEEEEecc
Q 043745           75 NIVIMMIGNKTDLKHLRAVA--TEDAQSYAEREGLSFIETSAL  115 (174)
Q Consensus        75 ~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~  115 (174)
                      .+|+++++||.|...... .  ...+++++...+.+++.+||.
T Consensus       206 ~KP~lyvaN~~e~~~~~~-n~~~~~i~~~~~~~~~~vV~~sA~  247 (372)
T COG0012         206 AKPMLYVANVSEDDLANL-NEYVKRLKELAAKENAEVVPVSAA  247 (372)
T ss_pred             cCCeEEEEECCcccccch-hHHHHHHHHHhhhcCCcEEEeeHH
Confidence            489999999999865322 2  466777788888889999985

>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring

Probab=84.32  E-value=14  Score=29.38  Aligned_cols=108  Identities=16%  Similarity=0.155  Sum_probs=56.5

Q ss_pred             EEEEEEEeCCCchh---hhhhhHHhhccCCEEEEEEeCCChhhHH---HHHHHHHHHHhhcCCCCeEEEEEeCCCCCCcc
Q 043745           18 TIKAQIWDTAGQER---YRAITSAYYRGALGALLVYDVTKPTTFE---NVSRWLKELRDHADSNIVIMMIGNKTDLKHLR   91 (174)
Q Consensus        18 ~~~l~l~D~~G~~~---~~~~~~~~~~~~d~ii~v~d~~~~~s~~---~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~   91 (174)
                      .+-+.|+|+.|...   |......  .-+|.+|+|- ..+..++.   ++.+.+..+......-.-+-+|.||.|...  
T Consensus       147 ~~DyVliD~~gdv~~ggf~l~i~~--~~ad~VIVVt-~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~~~--  221 (329)
T cd02033         147 DFDYVLLDFLGDVVCGGFGLPIAR--DMAQKVIVVG-SNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDGTG--  221 (329)
T ss_pred             cCCEEEEecCCcceeccccchhhh--cCCceEEEeC-CchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCCcc--
Confidence            35678888877442   2211111  1255554443 33445553   345555666554321123678889998632  


Q ss_pred             CCCHHHHHHHHHHhCCcEEEE----------------eccCCCCHHHHHHHHHHHHHHHH
Q 043745           92 AVATEDAQSYAEREGLSFIET----------------SALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~----------------Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                           ..+.+++.++++++-.                -......+.+.|..+.+.+....
T Consensus       222 -----~ie~~ae~lgi~vLg~IP~D~~V~~a~~~g~~~~~p~s~~a~~f~~LA~~I~~~~  276 (329)
T cd02033         222 -----EAQAFAAHAGIPILAAIPADEELRRKSAAYQIVGRPGTTWGPLFEQLATNVAEAP  276 (329)
T ss_pred             -----hHHHHHHHhCCCEEEECCCCHHHHHHHHcCCeecCCCCHHHHHHHHHHHHHHHhc
Confidence                 3566777777654321                01112235677777777776633

This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=83.85  E-value=2.7  Score=29.73  Aligned_cols=30  Identities=17%  Similarity=0.089  Sum_probs=16.5

Q ss_pred             HHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043745           98 AQSYAEREGLSFIETSALEAINVEKAFQTI  127 (174)
Q Consensus        98 ~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l  127 (174)
                      ..+..+.+|++++.+|++++++++++.+.+
T Consensus         4 ~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l   33 (161)
T PF03193_consen    4 LLEQYEKLGYPVFFISAKTGEGIEELKELL   33 (161)
T ss_dssp             HHHHHHHTTSEEEE-BTTTTTTHHHHHHHH
T ss_pred             HHHHHHHcCCcEEEEeCCCCcCHHHHHHHh
Confidence            344455556666666666666666655544

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.78  E-value=4.7  Score=32.84  Aligned_cols=44  Identities=16%  Similarity=0.163  Sum_probs=28.5

Q ss_pred             eEEEEEEEeCCCchhhh-hhhHH-----hhccCCEEEEEEeCCChhhHHH
Q 043745           17 RTIKAQIWDTAGQERYR-AITSA-----YYRGALGALLVYDVTKPTTFEN   60 (174)
Q Consensus        17 ~~~~l~l~D~~G~~~~~-~~~~~-----~~~~~d~ii~v~d~~~~~s~~~   60 (174)
                      ..+.+.|.||+|+..-. ++...     -.-..|-+|||.|++-.+.-..
T Consensus       182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~  231 (483)
T KOG0780|consen  182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEA  231 (483)
T ss_pred             cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHH
Confidence            45678999999965322 12111     1225899999999987655443

>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein

Probab=83.75  E-value=12  Score=28.44  Aligned_cols=68  Identities=18%  Similarity=0.213  Sum_probs=38.7

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeE-EEEEeCCCC
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVI-MMIGNKTDL   87 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi-ilv~nK~Dl   87 (174)
                      .+.+.|+|++|.-..... ...+..+|.++++... +..++..+...+..+.... ..++++ .+|.|+.+.
T Consensus       115 ~yD~ViID~~~~~~~~~~-~~~l~aAD~vlip~~~-~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~  184 (268)
T TIGR01281       115 DYDVILFDVLGDVVCGGF-ATPLQYADYALVVAAN-DFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDA  184 (268)
T ss_pred             cCCEEEEecCCccccCcc-ccchhhcCEEEEEecC-chhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence            467899999774322221 1235679999998765 3344554444444333221 234553 467799874

The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=83.09  E-value=24  Score=28.80  Aligned_cols=103  Identities=11%  Similarity=-0.022  Sum_probs=59.4

Q ss_pred             EEEEEEEeCCCchhhhh----hhHHhhccC--C-EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           18 TIKAQIWDTAGQERYRA----ITSAYYRGA--L-GALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~----~~~~~~~~~--d-~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      .+.+.|+||+|......    ....++...  + -.++|.|++..  ...+.+.+..+....    +-=+|.||.|-.. 
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~~----~~~~I~TKlDet~-  326 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPFS----YKTVIFTKLDETT-  326 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCCC----CCEEEEEeccCCC-
Confidence            35689999999754321    122233322  3 58899999865  333334444433211    2335679999643 


Q ss_pred             cCCCHHHHHHHHHHhCCcEEEEeccCCCCH-HHHHHHHHHHHH
Q 043745           91 RAVATEDAQSYAEREGLSFIETSALEAINV-EKAFQTILSEIY  132 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~v~~~l~~~i~  132 (174)
                         ..-.+..++...++|+..++  +|+++ +++...-...+.
T Consensus       327 ---~~G~~l~~~~~~~~Pi~yit--~Gq~vPeDl~~~~~~~~~  364 (388)
T PRK12723        327 ---CVGNLISLIYEMRKEVSYVT--DGQIVPHNISIAEPLTFI  364 (388)
T ss_pred             ---cchHHHHHHHHHCCCEEEEe--CCCCChhhhhhCCHHHHH
Confidence               23456677788888887775  56776 555443333333

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=83.06  E-value=13  Score=30.44  Aligned_cols=91  Identities=16%  Similarity=0.151  Sum_probs=52.5

Q ss_pred             EEEEEEeCCCchhhhh----hhHHhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC
Q 043745           19 IKAQIWDTAGQERYRA----ITSAYYR--GALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA   92 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~----~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~   92 (174)
                      +.+.|+||+|...+..    ....+..  ..+.+++|.+.+.  ...++..++..+...   + +--+|.||.|-..   
T Consensus       286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~~l---~-i~glI~TKLDET~---  356 (407)
T PRK12726        286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLAEI---P-IDGFIITKMDETT---  356 (407)
T ss_pred             CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcCcC---C-CCEEEEEcccCCC---
Confidence            5789999999854322    1222222  3466677777643  233333333332211   1 2345679999653   


Q ss_pred             CCHHHHHHHHHHhCCcEEEEeccCCCCHH
Q 043745           93 VATEDAQSYAEREGLSFIETSALEAINVE  121 (174)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  121 (174)
                       ..-.+..++...++|+.+++  +|+++.
T Consensus       357 -~~G~~Lsv~~~tglPIsylt--~GQ~Vp  382 (407)
T PRK12726        357 -RIGDLYTVMQETNLPVLYMT--DGQNIT  382 (407)
T ss_pred             -CccHHHHHHHHHCCCEEEEe--cCCCCC
Confidence             23456677888899988776  455554

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=82.49  E-value=4.1  Score=32.79  Aligned_cols=36  Identities=14%  Similarity=0.131  Sum_probs=26.3

Q ss_pred             EEEEEEeCCCch----hhhhhhHHh---hccCCEEEEEEeCCC
Q 043745           19 IKAQIWDTAGQE----RYRAITSAY---YRGALGALLVYDVTK   54 (174)
Q Consensus        19 ~~l~l~D~~G~~----~~~~~~~~~---~~~~d~ii~v~d~~~   54 (174)
                      ..+.|+|++|.-    .-+.+...|   ++.+|+++.|+++..
T Consensus        67 ~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~  109 (372)
T COG0012          67 APVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG  109 (372)
T ss_pred             eeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence            468999998853    334455555   468999999999873

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=82.28  E-value=6.5  Score=30.99  Aligned_cols=100  Identities=14%  Similarity=0.008  Sum_probs=52.6

Q ss_pred             CCCchh-hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHH
Q 043745           26 TAGQER-YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAER  104 (174)
Q Consensus        26 ~~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  104 (174)
                      .+||-- --+.....++..|.||=+=|+.-+-|-++  +.++   ...+ .+|=|+|.||+||.+..+. ...++.++.+
T Consensus        29 fpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn--~~~~---~~~~-~k~riiVlNK~DLad~~~~-k~~iq~~~~~  101 (335)
T KOG2485|consen   29 FPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRN--ELFQ---DFLP-PKPRIIVLNKMDLADPKEQ-KKIIQYLEWQ  101 (335)
T ss_pred             CchHHHHHHHHHHhhcccccEEEEeeccccCCcccc--HHHH---HhcC-CCceEEEEecccccCchhh-hHHHHHHHhh
Confidence            455542 22345666788999999999876544332  1122   2222 5778889999999874221 2334444444


Q ss_pred             hCCcEEEEec--cCCCCHHHHHHHHHHHHH
Q 043745          105 EGLSFIETSA--LEAINVEKAFQTILSEIY  132 (174)
Q Consensus       105 ~~~~~~~~Sa--~~~~~i~~v~~~l~~~i~  132 (174)
                      ....++..+.  ....++..++..+.....
T Consensus       102 ~~~~~~~~~c~~~~~~~v~~l~~il~~~~~  131 (335)
T KOG2485|consen  102 NLESYIKLDCNKDCNKQVSPLLKILTILSE  131 (335)
T ss_pred             cccchhhhhhhhhhhhccccHHHHHHHHHH
Confidence            2233333332  233334555544444333

>TIGR01007 eps_fam capsular exopolysaccharide family

Probab=81.75  E-value=9.6  Score=27.58  Aligned_cols=68  Identities=18%  Similarity=0.141  Sum_probs=41.3

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      .+.+.|+|+++..... ......+.+|.+|+|.+... .+...+...+..+....  ...+-+|.||.|...
T Consensus       127 ~yD~ViiD~pp~~~~~-~~~~~~~~~D~vilV~~~~~-~~~~~~~~~~~~l~~~~--~~~~gvVlN~~~~~~  194 (204)
T TIGR01007       127 YFDYIIIDTPPIGTVT-DAAIIARACDASILVTDAGE-IKKRDVQKAKEQLEQTG--SNFLGVVLNKVDISV  194 (204)
T ss_pred             cCCEEEEeCCCccccc-hHHHHHHhCCeEEEEEECCC-CCHHHHHHHHHHHHhCC--CCEEEEEEeCccccc
Confidence            3557899998632211 12234567899999998753 34555555555554432  234667889998653

This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=81.28  E-value=17  Score=30.01  Aligned_cols=90  Identities=10%  Similarity=0.075  Sum_probs=52.6

Q ss_pred             EEEEEEeCCCchhhhh----hhHHhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC
Q 043745           19 IKAQIWDTAGQERYRA----ITSAYYR--GALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA   92 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~----~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~   92 (174)
                      +.+.|+||+|......    .+..+++  ..+.++||.|++-.  .+.+..++..+...   + .-=+|.||.|-..   
T Consensus       321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~~---~-idglI~TKLDET~---  391 (436)
T PRK11889        321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI---H-IDGIVFTKFDETA---  391 (436)
T ss_pred             CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcCC---C-CCEEEEEcccCCC---
Confidence            5689999999754321    1223222  35778999987633  22333344444332   1 2235679999653   


Q ss_pred             CCHHHHHHHHHHhCCcEEEEeccCCCCH
Q 043745           93 VATEDAQSYAEREGLSFIETSALEAINV  120 (174)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  120 (174)
                       ..-.+..++...++|+..++  +|+++
T Consensus       392 -k~G~iLni~~~~~lPIsyit--~GQ~V  416 (436)
T PRK11889        392 -SSGELLKIPAVSSAPIVLMT--DGQDV  416 (436)
T ss_pred             -CccHHHHHHHHHCcCEEEEe--CCCCC
Confidence             23356677778888887776  45543

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=80.96  E-value=14  Score=30.71  Aligned_cols=56  Identities=14%  Similarity=0.196  Sum_probs=37.2

Q ss_pred             hhhHHHH-HHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEecc
Q 043745           55 PTTFENV-SRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSAL  115 (174)
Q Consensus        55 ~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  115 (174)
                      ++.+..+ .+-+.++...   ++|++++.|-.+-..  .-+.+...++..+++++++.++..
T Consensus       162 Re~Y~eAEervI~ELk~i---gKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~  218 (492)
T PF09547_consen  162 RENYVEAEERVIEELKEI---GKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCE  218 (492)
T ss_pred             hHHHHHHHHHHHHHHHHh---CCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehH
Confidence            4555555 3455666655   689999999887533  223455677777888888887753

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=80.63  E-value=9.8  Score=30.27  Aligned_cols=93  Identities=18%  Similarity=0.083  Sum_probs=54.7

Q ss_pred             EEEEEEEeCCCchhhhhh-------hHHhhccCCE-----EEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 043745           18 TIKAQIWDTAGQERYRAI-------TSAYYRGALG-----ALLVYDVTKP-TTFENVSRWLKELRDHADSNIVIMMIGNK   84 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~-------~~~~~~~~d~-----ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piilv~nK   84 (174)
                      .+-+.|.||+|+-.-...       +...++..+.     ++++.|++-. .++++++.+ .....     +- =++.||
T Consensus       221 ~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F-~eav~-----l~-GiIlTK  293 (340)
T COG0552         221 GIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIF-NEAVG-----LD-GIILTK  293 (340)
T ss_pred             CCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHH-HHhcC-----Cc-eEEEEe
Confidence            356899999996432211       2233334443     7777799865 455555443 32222     22 256799


Q ss_pred             CCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHH
Q 043745           85 TDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKA  123 (174)
Q Consensus        85 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v  123 (174)
                      .|-....    -.+..++..+++|+.++-  -|++++++
T Consensus       294 lDgtAKG----G~il~I~~~l~~PI~fiG--vGE~~~DL  326 (340)
T COG0552         294 LDGTAKG----GIILSIAYELGIPIKFIG--VGEGYDDL  326 (340)
T ss_pred             cccCCCc----ceeeeHHHHhCCCEEEEe--CCCChhhc
Confidence            9954321    134566788899988875  46667766

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=80.14  E-value=3.6  Score=29.34  Aligned_cols=80  Identities=18%  Similarity=0.103  Sum_probs=41.4

Q ss_pred             EEEEEEeCCCchhhhhh------hHHhhccCCEEEEEEeCCChhhHHHHHH-HHHHHHhhcCCCCeEEEEEeCCCCCCcc
Q 043745           19 IKAQIWDTAGQERYRAI------TSAYYRGALGALLVYDVTKPTTFENVSR-WLKELRDHADSNIVIMMIGNKTDLKHLR   91 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~------~~~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~   91 (174)
                      ....|.+++|...-..+      ... .-..+.+|.|+|+.+-........ +..++.. .     =+++.||+|+.+..
T Consensus        85 ~d~IiIE~sG~a~p~~l~~~~~~~~~-~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~-A-----DvIvlnK~D~~~~~  157 (178)
T PF02492_consen   85 PDRIIIETSGLADPAPLILQDPPLKE-DFRLDSIITVVDATNFDELENIPELLREQIAF-A-----DVIVLNKIDLVSDE  157 (178)
T ss_dssp             -SEEEEEEECSSGGGGHHHHSHHHHH-HESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGHHHH
T ss_pred             cCEEEECCccccccchhhhccccccc-cccccceeEEeccccccccccchhhhhhcchh-c-----CEEEEeccccCChh
Confidence            34456677775432222      111 225689999999977544444433 3333322 1     25677999997533


Q ss_pred             CCCHHHHHHHHHHhC
Q 043745           92 AVATEDAQSYAEREG  106 (174)
Q Consensus        92 ~~~~~~~~~~~~~~~  106 (174)
                       ...+..++..++++
T Consensus       158 -~~i~~~~~~ir~ln  171 (178)
T PF02492_consen  158 -QKIERVREMIRELN  171 (178)
T ss_dssp             ---HHHHHHHHHHH-
T ss_pred             -hHHHHHHHHHHHHC
Confidence             12355555555553

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	174
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		1e-55
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		2e-55
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		9e-55
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		3e-54
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		2e-53
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		1e-52
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		1e-52
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		2e-49
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		4e-44
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		8e-42
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		8e-42
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		2e-40
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		2e-35
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		1e-34
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		8e-33
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		8e-33
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		1e-31
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		2e-31
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		4e-31
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		4e-31
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		5e-31
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		6e-31
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		7e-31
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		7e-31
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		8e-31
4fmc_B	171	Espg-Rab1 Complex Length = 171		9e-31
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		1e-30
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		1e-30
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		2e-30
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		2e-30
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		3e-30
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		4e-30
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		1e-29
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		1e-29
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		4e-29
2efc_B	181	Ara7-GdpATVPS9A Length = 181		8e-29
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		6e-28
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		1e-27
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		2e-27
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		2e-27
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		2e-27
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		2e-27
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		3e-27
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		3e-27
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		3e-27
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		4e-27
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		4e-27
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		4e-27
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		4e-27
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		4e-27
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		4e-27
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		4e-27
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		1e-26
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		1e-26
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		2e-26
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		2e-26
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		2e-26
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		3e-26
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		3e-26
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		3e-26
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		4e-26
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		1e-25
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		1e-25
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		1e-25
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		5e-25
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		9e-25
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		9e-25
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		1e-24
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		3e-24
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		4e-24
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		5e-24
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		6e-24
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		1e-23
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		1e-23
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		1e-23
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		1e-23
1vg1_A	185	Gdp-bound Rab7 Length = 185		1e-23
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		3e-23
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		4e-23
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		4e-23
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		4e-23
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		5e-23
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		2e-22
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		2e-22
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		2e-22
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-22
4fmc_F	117	Espg-Rab1 Complex Length = 117		9e-22
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		2e-21
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		5e-21
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		7e-21
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		9e-21
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		2e-20
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		4e-20
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		4e-20
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		7e-20
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		9e-20
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		2e-18
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		2e-18
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		1e-17
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		2e-17
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		3e-17
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		3e-17
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		4e-17
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		1e-16
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		3e-16
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		4e-16
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		5e-16
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		6e-16
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-15
4q21_A	189	Molecular Switch For Signal Transduction: Structura		2e-15
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		2e-15
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-15
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-15
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		4e-15
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		4e-15
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		5e-15
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		5e-15
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		6e-15
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		6e-15
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		6e-15
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		6e-15
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		7e-15
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		7e-15
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		7e-15
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		7e-15
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		7e-15
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		7e-15
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		7e-15
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		8e-15
1wq1_R	166	Ras-Rasgap Complex Length = 166		8e-15
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		8e-15
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		8e-15
6q21_A	171	Molecular Switch For Signal Transduction: Structura		8e-15
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		8e-15
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		8e-15
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		9e-15
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		1e-14
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		2e-14
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		2e-14
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		2e-14
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		2e-14
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		2e-14
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-14
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-14
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		3e-14
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		4e-14
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		5e-14
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		5e-14
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		6e-14
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		6e-14
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		7e-14
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		7e-14
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		8e-14
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		9e-14
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		9e-14
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		1e-13
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		1e-13
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		1e-13
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		1e-13
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		2e-13
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		2e-13
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		4e-13
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		5e-13
1byu_A	216	Canine Gdp-Ran Length = 216		5e-13
2bku_A	177	Kap95p:rangtp Complex Length = 177		5e-13
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		5e-13
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		5e-13
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		5e-13
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		6e-13
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		6e-13
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		8e-13
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		2e-12
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		3e-12
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		4e-12
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		4e-12
3icq_B	171	Karyopherin Nuclear State Length = 171		4e-12
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		4e-12
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		4e-12
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		5e-12
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		5e-12
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		1e-11
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		1e-11
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		1e-11
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		2e-11
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		3e-11
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		4e-11
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		4e-11
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		4e-11
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		4e-11
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		4e-11
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		5e-11
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		5e-11
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		5e-11
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		5e-11
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		5e-11
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		5e-11
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		5e-11
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		5e-11
1s1c_A	183	Crystal Structure Of The Complex Between The Human		5e-11
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		6e-11
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		6e-11
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		6e-11
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		8e-11
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		9e-11
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		1e-10
1mh1_A	186	Small G-Protein Length = 186		1e-10
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		1e-10
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		1e-10
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		1e-10
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		2e-10
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		2e-10
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		2e-10
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		2e-10
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		3e-10
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		3e-10
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		3e-10
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		4e-10
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		5e-10
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		6e-10
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		6e-10
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		7e-10
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		7e-10
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		7e-10
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		7e-10
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		7e-10
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		8e-10
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		1e-09
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		1e-09
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		2e-09
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		2e-09
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		3e-09
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		3e-09
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		4e-09
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		4e-09
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		5e-09
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		6e-09
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		7e-09
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		8e-09
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		9e-09
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		2e-08
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		4e-08
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		8e-08
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		1e-07
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		1e-07
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		2e-07
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		2e-07
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		2e-07
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		4e-07
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		4e-07
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		4e-07
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		5e-07
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		6e-07
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		7e-07
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		7e-07
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		8e-07
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		2e-06
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		2e-06
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		2e-06
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		2e-06
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		3e-06
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		3e-06
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		3e-06
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		3e-06
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		3e-06
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		4e-06
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		4e-06
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		4e-06
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		4e-06
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		4e-06
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		4e-06
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		4e-06
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		4e-06
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		5e-06
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		6e-06
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		7e-06
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		9e-06
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		9e-06
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		1e-05
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		1e-05
2kb0_A	178	Cdc42(T35a) Length = 178		1e-05
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		1e-05
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		1e-05
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		1e-05
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		3e-05
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		4e-05
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		6e-05
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		3e-04
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		3e-04
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		5e-04
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		5e-04
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		5e-04
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		6e-04
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		7e-04
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		8e-04
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		9e-04

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  211 bits (538), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 96/122 (78%), Positives = 114/122 (93%)
Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           QV+G+TIKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+ K  T+ENV RWLKELRDHA
Sbjct: 63  QVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 122
Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
           DSNIVIM++GNK+DL+HLRAV T++A+++AE+ GLSFIETSAL++ NVE AFQTIL+EIY
Sbjct: 123 DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 182
Query: 133 RI 134
           RI
Sbjct: 183 RI 184

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  211 bits (536), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 96/140 (68%), Positives = 123/140 (87%), Gaps = 3/140 (2%)
Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           QV+G+TIKAQIWDTAGQERYR ITSAYYRGA+GALLVYD+ K  T+ENV RWLKELRDHA
Sbjct: 48  QVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 107
Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
           DSNIVIM++GNK+DL+HLRAV T++A+++AE+  LSFIETSAL++ NVE+AF+ IL+EIY
Sbjct: 108 DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIY 167
Query: 133 RIISKKSL---SSGEPAPSN 149
           RI+S+K +   ++ + +P N
Sbjct: 168 RIVSQKQIADRAAHDESPGN 187

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  209 bits (531), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 95/122 (77%), Positives = 113/122 (92%)
Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           QV+G+TIKAQIWDTAG ERYRAITSAYYRGA+GALLVYD+ K  T+ENV RWLKELRDHA
Sbjct: 51  QVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 110
Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
           DSNIVIM++GNK+DL+HLRAV T++A+++AE+ GLSFIETSAL++ NVE AFQTIL+EIY
Sbjct: 111 DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 170
Query: 133 RI 134
           RI
Sbjct: 171 RI 172

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  207 bits (526), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 94/120 (78%), Positives = 112/120 (93%)
Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           QV+G+TIKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+ K  T+ENV RWLKELRDHA
Sbjct: 72  QVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 131
Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
           DSNIVIM++GNK+DL+HLRAV T++A+++AE+ GLSFIETSAL++ NVE AFQTIL+EIY
Sbjct: 132 DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  204 bits (519), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 93/120 (77%), Positives = 111/120 (92%)
Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           QV+G+TIKAQIWDTAG ERYRAITSAYYRGA+GALLVYD+ K  T+ENV RWLKELRDHA
Sbjct: 72  QVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 131
Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
           DSNIVIM++GNK+DL+HLRAV T++A+++AE+ GLSFIETSAL++ NVE AFQTIL+EIY
Sbjct: 132 DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  202 bits (513), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 92/120 (76%), Positives = 110/120 (91%)
Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           QV+G+TIKAQIWDTAG ERYRAITSAYYRGA+GALLVYD+ K  T+ENV RWLKELRDHA
Sbjct: 54  QVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 113
Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
           DSNIVI ++GNK+DL+HLRAV T++A+++AE+ GLSFIETSAL++ NVE AFQTIL+EIY
Sbjct: 114 DSNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  202 bits (513), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 92/120 (76%), Positives = 110/120 (91%)
Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           QV+G+TIKAQIWDTAG ERYRAITSAYYRGA+GALLVYD+ K  T+ENV RWLKELRDHA
Sbjct: 48  QVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 107
Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
           DSNIVI ++GNK+DL+HLRAV T++A+++AE+ GLSFIETSAL++ NVE AFQTIL+EIY
Sbjct: 108 DSNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  191 bits (484), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 86/123 (69%), Positives = 104/123 (84%)
Query: 16  GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSN 75
            + IKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+TK  +FEN+ +WLKELRD+ADSN
Sbjct: 54  NKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSN 113
Query: 76  IVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII 135
           IVI+++GNK+DLKHLR +   DA  YA++E L+FIETSALEA NVE AF  +L+EIY + 
Sbjct: 114 IVILLVGNKSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVR 173
Query: 136 SKK 138
            KK
Sbjct: 174 QKK 176

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  173 bits (439), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 77/148 (52%), Positives = 113/148 (76%)
Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
            ++EG+ IKAQIWDTAGQERYRAITSAYYRGA+GAL+VYD++K +++EN + WL ELR++
Sbjct: 55  LEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELREN 114
Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           AD N+ + +IGNK+DL HLRAV TE+++++A+   L F ETSAL + NV+KAF+ +++ I
Sbjct: 115 ADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTI 174
Query: 132 YRIISKKSLSSGEPAPSNIKEGQTIVVG 159
           Y+ +SK  +  G+ + +    G +   G
Sbjct: 175 YQKVSKHQMDLGDSSANGNANGASAPNG 202

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  166 bits (419), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 76/120 (63%), Positives = 98/120 (81%)
Query: 19  IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVI 78
           +KAQIWDTAG ERYRAITSAYYRGA+GALLV+D+TK  T+  V RWLKEL DHA++ IV+
Sbjct: 59  VKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVV 118
Query: 79  MMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK 138
           M++GNK+DL   R V TE+A+ +AE  GL F+ETSAL++ NVE AF+T+L EI+  +SK+
Sbjct: 119 MLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 178

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  166 bits (419), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 76/120 (63%), Positives = 98/120 (81%)
Query: 19  IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVI 78
           +KAQIWDTAG ERYRAITSAYYRGA+GALLV+D+TK  T+  V RWLKEL DHA++ IV+
Sbjct: 74  VKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVV 133
Query: 79  MMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK 138
           M++GNK+DL   R V TE+A+ +AE  GL F+ETSAL++ NVE AF+T+L EI+  +SK+
Sbjct: 134 MLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  160 bits (406), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 71/128 (55%), Positives = 103/128 (80%)
Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           +VE + IKAQIWDTAG ERYRAITSAYYRGA+GAL+VYD++K +++EN + WL ELR++A
Sbjct: 53  EVENKKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENA 112
Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
           D N+ + +IGNK+DL HLRAV T++A+++A    + F ETSAL + NV+KAF+ ++  I+
Sbjct: 113 DDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIF 172
Query: 133 RIISKKSL 140
           +++SK  +
Sbjct: 173 QMVSKHQV 180

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  144 bits (364), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 67/124 (54%), Positives = 92/124 (74%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD+T+  TF +++ WL++ R H+ 
Sbjct: 65  IDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS 124
Query: 74  SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133
           SN+VIM+IGNK+DL+  R V  E+ +++A   GL F+ETSA  A NVE+AF     EIYR
Sbjct: 125 SNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 184
Query: 134 IISK 137
            I +
Sbjct: 185 KIQQ 188

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  142 bits (357), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 65/119 (54%), Positives = 90/119 (75%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD+T+  TF +++ WL++ R H++
Sbjct: 54  IDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSN 113
Query: 74  SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
           SN+VIM+IGNK+DL+  R V  E+ +++A   GL F+ETSA  A NVE+AF     EIY
Sbjct: 114 SNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIY 172

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  136 bits (342), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 67/159 (42%), Positives = 104/159 (65%), Gaps = 3/159 (1%)
Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           +++G+T+K QIWDTAGQER+R ITS+YYRG+ G ++VYDVT   +F  V  WL+E+  +A
Sbjct: 51  ELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA 110
Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
            S ++ +++GNK DLK  R V  + A+ +A+   + F+ETSAL++ NVE AF T+  +I 
Sbjct: 111 TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIK 170
Query: 133 RIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 171
             +S+++L+  E       +G  + + G S  NT   CC
Sbjct: 171 ESMSQQNLN--ETTQKKEDKGN-VNLKGQSLTNTGGCCC 206

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  136 bits (342), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 67/159 (42%), Positives = 104/159 (65%), Gaps = 3/159 (1%)
Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           +++G+T+K QIWDTAGQER+R ITS+YYRG+ G ++VYDVT   +F  V  WL+E+  +A
Sbjct: 51  ELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA 110
Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
            S ++ +++GNK DLK  R V  + A+ +A+   + F+ETSAL++ NVE AF T+  +I 
Sbjct: 111 TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIK 170
Query: 133 RIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 171
             +S+++L+  E       +G  + + G S  NT   CC
Sbjct: 171 ESMSQQNLN--ETTQKKEDKGN-VNLKGQSLTNTGGGCC 206

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 69/160 (43%), Positives = 100/160 (62%), Gaps = 17/160 (10%)
Query: 8   KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
           K+   +++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E
Sbjct: 54  KIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE 113
Query: 68  LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
           +  +A  N+  +++GNK DL   + V    A+ +A+  G+ F+ETSA  A NVE++F T+
Sbjct: 114 IDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 173
Query: 128 LSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTK 167
            +EI     KK +  G  A            GGA ++N K
Sbjct: 174 AAEI-----KKRMGPGATA------------GGAEKSNVK 196

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  131 bits (329), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 62/121 (51%), Positives = 86/121 (71%)
Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           +V G+ IK QIWDTAGQER+RA+T +YYRGA GAL+VYD+T+ +T+ ++S WL + R+  
Sbjct: 58  EVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT 117
Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
           + N VI++IGNK DL+  R V  E+A+ +AE  GL F+E SA    NVE AF     +IY
Sbjct: 118 NPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177
Query: 133 R 133
           +
Sbjct: 178 Q 178

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  130 bits (327), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 60/124 (48%), Positives = 87/124 (70%)
Query: 8   KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
           K+    +E +T+K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F+NV +W++E
Sbjct: 47  KIRTISLENKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQE 106
Query: 68  LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
           +  +A  N+  +++GNK DL   R V +++ +  A+  G+ FIETSA  A NVE+AF T+
Sbjct: 107 IDRYAMENVNKLLVGNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTM 166
Query: 128 LSEI 131
             EI
Sbjct: 167 AGEI 170

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  130 bits (326), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 60/124 (48%), Positives = 89/124 (71%)
Query: 8   KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
           K+   +++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   ++ NV +WL+E
Sbjct: 47  KIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQE 106
Query: 68  LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
           +  +A  N+  +++GNK+DL   + V    A+ +A+  G+ F+ETSA  A NVE+AF T+
Sbjct: 107 IDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTM 166
Query: 128 LSEI 131
            +EI
Sbjct: 167 AAEI 170

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  130 bits (326), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 60/124 (48%), Positives = 89/124 (71%)
Query: 8   KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
           K+   +++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   ++ NV +WL+E
Sbjct: 47  KIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQE 106
Query: 68  LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
           +  +A  N+  +++GNK+DL   + V    A+ +A+  G+ F+ETSA  A NVE+AF T+
Sbjct: 107 IDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTM 166
Query: 128 LSEI 131
            +EI
Sbjct: 167 AAEI 170

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  129 bits (325), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 60/124 (48%), Positives = 88/124 (70%)
Query: 8   KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
           K+   +++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E
Sbjct: 54  KIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE 113
Query: 68  LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
           +  +A  N+  +++GNK DL   + V    A+ +A+  G+ F+ETSA  A NVE++F T+
Sbjct: 114 IDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 173
Query: 128 LSEI 131
            +EI
Sbjct: 174 AAEI 177

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  129 bits (325), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 60/124 (48%), Positives = 88/124 (70%)
Query: 8   KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
           K+   +++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E
Sbjct: 37  KIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE 96
Query: 68  LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
           +  +A  N+  +++GNK DL   + V    A+ +A+  G+ F+ETSA  A NVE++F T+
Sbjct: 97  IDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 156
Query: 128 LSEI 131
            +EI
Sbjct: 157 AAEI 160

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  129 bits (325), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 60/124 (48%), Positives = 88/124 (70%)
Query: 8   KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
           K+   +++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E
Sbjct: 63  KIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE 122
Query: 68  LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
           +  +A  N+  +++GNK DL   + V    A+ +A+  G+ F+ETSA  A NVE++F T+
Sbjct: 123 IDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 182
Query: 128 LSEI 131
            +EI
Sbjct: 183 AAEI 186

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  129 bits (324), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 60/124 (48%), Positives = 88/124 (70%)
Query: 8   KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
           K+   +++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E
Sbjct: 44  KIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE 103
Query: 68  LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
           +  +A  N+  +++GNK DL   + V    A+ +A+  G+ F+ETSA  A NVE++F T+
Sbjct: 104 IDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 163
Query: 128 LSEI 131
            +EI
Sbjct: 164 AAEI 167

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  129 bits (324), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 60/124 (48%), Positives = 88/124 (70%)
Query: 8   KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
           K+   +++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E
Sbjct: 44  KIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE 103
Query: 68  LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
           +  +A  N+  +++GNK DL   + V    A+ +A+  G+ F+ETSA  A NVE++F T+
Sbjct: 104 IDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 163
Query: 128 LSEI 131
            +EI
Sbjct: 164 AAEI 167

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  129 bits (323), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/123 (50%), Positives = 86/123 (69%)
Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           +V G+ IK QIWDTAGQ R+RA+T +YYRGA GAL+VYD+T+ +T+ ++S WL + R+  
Sbjct: 73  EVSGQKIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT 132
Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
           + N VI++IGNK DL+  R V  E+A+ +AE  GL F+E SA    NVE AF     +IY
Sbjct: 133 NPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 192
Query: 133 RII 135
           + I
Sbjct: 193 QNI 195

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  128 bits (322), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 59/131 (45%), Positives = 89/131 (67%)
Query: 8   KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
           K+   +++G+ IK QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ 
Sbjct: 44  KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRN 103
Query: 68  LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
           + +HA +++  M++GNK D+   R V+ E  +  A   G+ F+ETSA   INVE AF T+
Sbjct: 104 IEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL 163
Query: 128 LSEIYRIISKK 138
             +I   + KK
Sbjct: 164 ARDIKAKMDKK 174

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 60/124 (48%), Positives = 87/124 (70%)
Query: 8   KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
           K+   +++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E
Sbjct: 71  KIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE 130
Query: 68  LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
           +  +A  N+  +++GNK DL   + V    A+ +A+  G+ F+ETSA  A NVE++F T 
Sbjct: 131 IDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTX 190
Query: 128 LSEI 131
            +EI
Sbjct: 191 AAEI 194

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  127 bits (320), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 57/119 (47%), Positives = 86/119 (72%)
Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           +++G+T+K QIWDTAGQER+R ITS+YYRG+ G ++VYDVT   +F  V  WL+E+  +A
Sbjct: 64  ELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA 123
Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
            S ++ +++GNK DLK  R V  + A+ +A+   + F+ETSAL++ NVE AF T+  +I
Sbjct: 124 TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 57/124 (45%), Positives = 86/124 (69%)
Query: 8   KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
           K+   +++G+ IK QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ 
Sbjct: 46  KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRN 105
Query: 68  LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
           + +HA +++  M++GNK D+   R V+ E  +  A   G+ F+ETSA   INVE AF T+
Sbjct: 106 IEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL 165
Query: 128 LSEI 131
             +I
Sbjct: 166 ARDI 169

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  127 bits (318), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 61/121 (50%), Positives = 90/121 (74%), Gaps = 1/121 (0%)
Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
            +++G+ +K QIWDTAGQER+R IT +YYR A GA+L YD+TK ++F +V  W++++R +
Sbjct: 71  LEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKY 130
Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAER-EGLSFIETSALEAINVEKAFQTILSE 130
           A SNIV ++IGNK+DL  LR V+  +AQS AE  + L  IETSA ++ NVE+AF  + +E
Sbjct: 131 AGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATE 190
Query: 131 I 131
           +
Sbjct: 191 L 191

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 59/124 (47%), Positives = 87/124 (70%)
Query: 8   KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
           K+   +++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E
Sbjct: 46  KIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE 105
Query: 68  LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
           +  +A  N+  +++G K DL   + V    A+ +A+  G+ F+ETSA  A NVE++F T+
Sbjct: 106 IDRYASENVNKLLVGIKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 165
Query: 128 LSEI 131
            +EI
Sbjct: 166 AAEI 169

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  125 bits (314), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 56/122 (45%), Positives = 80/122 (65%)
Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
             V+G  +K Q+WDTAGQER+R++T AYYR A   LL+YDVT   +F+N+  WL E+ ++
Sbjct: 53  LDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEY 112
Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           A  ++ +M++GNK D  H R V  ED +  A+  GL F+ETSA   +NV+ AF  I  E+
Sbjct: 113 AQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172
Query: 132 YR 133
            R
Sbjct: 173 KR 174

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  123 bits (309), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 62/123 (50%), Positives = 85/123 (69%), Gaps = 4/123 (3%)
Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
            V G+T+K QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+ +++ WL + R  A
Sbjct: 68  NVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLA 127
Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF----QTIL 128
             NIV+++ GNK DL   R V   +A  +A+   L F+ETSAL   NVE+AF    +TIL
Sbjct: 128 SPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTIL 187
Query: 129 SEI 131
           ++I
Sbjct: 188 NKI 190

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  122 bits (307), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 56/121 (46%), Positives = 80/121 (66%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           V   T+K +IWDTAGQERY ++   YYRGA  A++V+DVT   +FE   +W++EL+   +
Sbjct: 56  VNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN 115
Query: 74  SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133
            N+V+ + GNK+DL   R V  EDAQ+YA+  GL F+ETSA  A NV++ F  I   + R
Sbjct: 116 PNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPR 175
Query: 134 I 134
           +
Sbjct: 176 V 176

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  120 bits (300), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 63/138 (45%), Positives = 84/138 (60%), Gaps = 5/138 (3%)
Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
            V G+ +K QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+  ++ WL + R  A
Sbjct: 53  NVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA 112
Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
             NIVI++ GNK DL   R V   +A  +A+   L F+ETSAL   NVE+AF     +I 
Sbjct: 113 SQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKIL 172
Query: 133 RIISKKSLSSGEPAPSNI 150
                  + SGE  P  +
Sbjct: 173 -----NKIESGELDPERM 185

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  119 bits (297), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/121 (46%), Positives = 77/121 (63%), Gaps = 1/121 (0%)
Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           ++ G  +K QIWDTAGQER+R ITS YYRG  G ++VYDVT   +F NV RWL E+  + 
Sbjct: 52  EINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC 111
Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
           D ++  +++GNK D    + V TEDA  +A + G+   ETSA E +NVE+ F  I   + 
Sbjct: 112 D-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVL 170
Query: 133 R 133
           R
Sbjct: 171 R 171

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/133 (41%), Positives = 84/133 (63%), Gaps = 1/133 (0%)
Query: 8   KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
           K+    + G+ +K Q+WDTAGQER+R IT+AYYRGA+G +LVYDVT   TF N+ +W K 
Sbjct: 58  KIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKT 117
Query: 68  LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
           + +HA+    ++++GNK+D++  R V  +  ++ A+  G+ FIE+SA    NV + F T+
Sbjct: 118 VNEHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 176
Query: 128 LSEIYRIISKKSL 140
              I   I    L
Sbjct: 177 AKLIQEKIDSNKL 189

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/112 (48%), Positives = 76/112 (67%)
Query: 20  KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM 79
           K  IWDTAGQER+ ++   YYRG+  A++VYD+TK  +F  + +W+KEL++H   NIV+ 
Sbjct: 73  KFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMA 132
Query: 80  MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           + GNK DL  +R V  +DA+ YAE  G   +ETSA  AIN+E+ FQ I  +I
Sbjct: 133 IAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 56/114 (49%), Positives = 75/114 (65%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++  T+K +IWDTAGQERY ++   YYRGA  A++VYD+T   TF     W+KEL+  A 
Sbjct: 49  LDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQAS 108
Query: 74  SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
            NIVI + GNK DL   RAV  ++AQ+YA+   L F+ETSA  A+NV + F  I
Sbjct: 109 PNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 162

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 56/114 (49%), Positives = 75/114 (65%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++  T+K +IWDTAGQERY ++   YYRGA  A++VYD+T   TF     W+KEL+  A 
Sbjct: 47  LDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQAS 106
Query: 74  SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
            NIVI + GNK DL   RAV  ++AQ+YA+   L F+ETSA  A+NV + F  I
Sbjct: 107 PNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 160

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  117 bits (294), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 52/120 (43%), Positives = 81/120 (67%), Gaps = 1/120 (0%)
Query: 8   KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
           K+    + G+ +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   TF N+ +W K 
Sbjct: 41  KIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKT 100
Query: 68  LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
           + +HA+    ++++GNK+D++  R V  +  ++ A+  G+ FIE+SA    NV + F T+
Sbjct: 101 VNEHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  117 bits (293), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 57/112 (50%), Positives = 76/112 (67%)
Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
            V G+ +K QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+  ++ WL + R  A
Sbjct: 54  NVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA 113
Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
             NIVI++ GNK DL   R V   +A  +A+   L F+ETSAL   +VE+AF
Sbjct: 114 SQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAF 165

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  117 bits (293), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 52/120 (43%), Positives = 81/120 (67%), Gaps = 1/120 (0%)
Query: 8   KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
           K+    + G+ +K Q+WDTAGQER+R IT+AYYRGA+G +LVYDVT   TF N+ +W K 
Sbjct: 45  KIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKT 104
Query: 68  LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
           + +HA+    ++++GNK+D++  R V  +  ++ A+  G+ FIE+SA    NV + F T+
Sbjct: 105 VNEHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 163

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  117 bits (293), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 55/114 (48%), Positives = 76/114 (66%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++  T+K +IWDTAGQERY ++   YYRGA  A++VYD+T   +F     W+KEL+  A 
Sbjct: 51  LDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS 110
Query: 74  SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
            NIVI + GNK DL + RAV  ++AQSYA+   L F+ETSA  ++NV + F  I
Sbjct: 111 PNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 164

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  117 bits (293), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 55/118 (46%), Positives = 78/118 (66%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++  T+K +IWDTAGQERY ++   YYRGA  A++VYD+T   +F     W+KEL+  A 
Sbjct: 50  LDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS 109
Query: 74  SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
            NIVI + GNK DL + RAV  ++AQSYA+   L F+ETSA  ++NV + F  I  ++
Sbjct: 110 PNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  117 bits (293), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 55/118 (46%), Positives = 78/118 (66%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++  T+K +IWDTAGQERY ++   YYRGA  A++VYD+T   +F     W+KEL+  A 
Sbjct: 50  LDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS 109
Query: 74  SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
            NIVI + GNK DL + RAV  ++AQSYA+   L F+ETSA  ++NV + F  I  ++
Sbjct: 110 PNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  117 bits (292), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 55/114 (48%), Positives = 76/114 (66%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++  T+K +IWDTAGQERY ++   YYRGA  A++VYD+T   +F     W+KEL+  A 
Sbjct: 50  LDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS 109
Query: 74  SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
            NIVI + GNK DL + RAV  ++AQSYA+   L F+ETSA  ++NV + F  I
Sbjct: 110 PNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  117 bits (292), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 55/118 (46%), Positives = 78/118 (66%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++  T+K +IWDTAGQERY ++   YYRGA  A++VYD+T   +F     W+KEL+  A 
Sbjct: 50  LDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS 109
Query: 74  SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
            NIVI + GNK DL + RAV  ++AQSYA+   L F+ETSA  ++NV + F  I  ++
Sbjct: 110 PNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  117 bits (292), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 55/114 (48%), Positives = 76/114 (66%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++  T+K +IWDTAGQERY ++   YYRGA  A++VYD+T   +F     W+KEL+  A 
Sbjct: 50  LDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS 109
Query: 74  SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
            NIVI + GNK DL + RAV  ++AQSYA+   L F+ETSA  ++NV + F  I
Sbjct: 110 PNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  117 bits (292), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 55/118 (46%), Positives = 78/118 (66%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++  T+K +IWDTAGQERY ++   YYRGA  A++VYD+T   +F     W+KEL+  A 
Sbjct: 50  LDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS 109
Query: 74  SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
            NIVI + GNK DL + RAV  ++AQSYA+   L F+ETSA  ++NV + F  I  ++
Sbjct: 110 PNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  115 bits (288), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 55/126 (43%), Positives = 82/126 (65%), Gaps = 5/126 (3%)
Query: 11  DFQVEG-----RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWL 65
           DF+V+      + +K QIWDTAGQERYR IT+AYYRGA+G +L+YD+T   +F  V  W 
Sbjct: 59  DFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWA 118
Query: 66  KELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQ 125
            +++ ++  N  ++++GNK D++  R V TE  Q  AE+ G  F E SA E I+V +AF+
Sbjct: 119 TQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFE 178
Query: 126 TILSEI 131
            ++  I
Sbjct: 179 RLVDAI 184

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  115 bits (288), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 55/114 (48%), Positives = 74/114 (64%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++  T+K +IWDTAG ERY ++   YYRGA  A++VYD+T   TF     W+KEL+  A 
Sbjct: 49  LDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQAS 108
Query: 74  SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
            NIVI + GNK DL   RAV  ++AQ+YA+   L F+ETSA  A+NV + F  I
Sbjct: 109 PNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 162

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/118 (46%), Positives = 76/118 (64%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++  T+K +IWDTAGQERY ++   YYRGA  A++VYD+T   +F     W+KEL+  A 
Sbjct: 51  LDDTTVKFEIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS 110
Query: 74  SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
            NIVI + GNK DL + RAV  ++AQSYA+   L F ETSA  + NV + F  I  ++
Sbjct: 111 PNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/118 (46%), Positives = 76/118 (64%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++  T+K +IWDTAGQERY ++   YYRGA  A++VYD+T   TF     W+KEL+  A 
Sbjct: 52  LDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQAS 111
Query: 74  SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
            +IVI + GNK DL + R V  E+AQ+YA+   L F+ETSA  A+NV   F  I  ++
Sbjct: 112 PSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 52/120 (43%), Positives = 78/120 (65%), Gaps = 1/120 (0%)
Query: 8   KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
           K+    + G+ +K QIWDTAGQER+R IT+AYYRGA G +LVYD+T   TF N+ +W K 
Sbjct: 41  KIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKT 100
Query: 68  LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
           + +HA+    ++++GNK+D    R V  +  ++ A+  G+ FIE+SA    NV + F T+
Sbjct: 101 VNEHANDEAQLLLVGNKSD-XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  114 bits (285), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 56/112 (50%), Positives = 75/112 (66%)
Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
            V G+ +K QIWDTAG ER+R++T +YYRGA GALLVYD+T   T+  ++ WL + R  A
Sbjct: 51  NVGGKYVKLQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA 110
Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
             NIVI++ GNK DL   R V   +A  +A+   L F+ETSAL   +VE+AF
Sbjct: 111 SQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAF 162

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  114 bits (285), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 52/120 (43%), Positives = 78/120 (65%), Gaps = 1/120 (0%)
Query: 8   KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
           K+    + G+ +K Q+WDTAGQER+R IT+AYYRGA G +LVYDVT   TF N+ +W K 
Sbjct: 41  KIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKT 100
Query: 68  LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
           + +HA+    ++++GNK+D    R V  +  ++ A+  G+ FIE+SA    NV + F T+
Sbjct: 101 VNEHANDEAQLLLVGNKSD-XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  114 bits (284), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 54/114 (47%), Positives = 75/114 (65%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++  T+K +IWDTAG ERY ++   YYRGA  A++VYD+T   +F     W+KEL+  A 
Sbjct: 49  LDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS 108
Query: 74  SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
            NIVI + GNK DL + RAV  ++AQSYA+   L F+ETSA  ++NV + F  I
Sbjct: 109 PNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 162

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  113 bits (283), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 55/126 (43%), Positives = 80/126 (63%), Gaps = 5/126 (3%)
Query: 11  DFQVE-----GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWL 65
           DF+V+      + IK QIWDTAGQERYR IT+AYYRGA+G LL+YD+    +F  V  W 
Sbjct: 58  DFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWA 117
Query: 66  KELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQ 125
            +++ ++  N  ++++GNK DL+  R V  ED +  A+  G  F E SA E INV++ F+
Sbjct: 118 TQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFE 177
Query: 126 TILSEI 131
            ++  I
Sbjct: 178 RLVDVI 183

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/148 (39%), Positives = 90/148 (60%), Gaps = 6/148 (4%)
Query: 11  DFQVE-----GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWL 65
           DF+V+      + IK QIWDTAG ERYR IT+AYYRGA G +L YD+T   +F  V  W 
Sbjct: 44  DFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWS 103
Query: 66  KELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQ 125
            +++ ++  N  ++++GNK D +  R V++E  +  A+  G  F E SA + INV++ F+
Sbjct: 104 TQIKTYSWDNAQVLLVGNKCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE 163
Query: 126 TILSEIYRIISKKSLSSGEPAPSNIKEG 153
            ++  I    S +SL + +PA +  K+G
Sbjct: 164 RLVDVICEKXS-ESLDTADPAVTGAKQG 190

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  112 bits (279), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/115 (46%), Positives = 72/115 (62%)
Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           Q +    K  IWDTAGQER+RA+   YYRG+  A++VYD+TK  TF  +  W++ELR H 
Sbjct: 48  QYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHG 107
Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
             +IV+ + GNK DL  +R V   DA+ YA+     F+ETSA  AIN+ + F  I
Sbjct: 108 PPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 162

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  112 bits (279), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 52/126 (41%), Positives = 82/126 (65%), Gaps = 5/126 (3%)
Query: 11  DFQVE-----GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWL 65
           DF+V+      + IK QIWDTAGQERYR IT+AYYRGA+G +L+YD+T   +F  V  W 
Sbjct: 41  DFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWS 100
Query: 66  KELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQ 125
            +++ ++  N  ++++GNK D++  R V++E  +  A+  G  F E SA + INV++ F+
Sbjct: 101 TQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE 160
Query: 126 TILSEI 131
            ++  I
Sbjct: 161 RLVDVI 166

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  110 bits (274), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 76/112 (67%)
Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           ++ G  +K QIWDTAGQER+R+IT +YYR A   +L YD+T   +F  +  WL+E+  +A
Sbjct: 69  EINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA 128
Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
            + ++ +++GNK DL   R V+ + A+ ++E + + ++ETSA E+ NVEK F
Sbjct: 129 SNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF 180

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  109 bits (272), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 71/115 (61%)
Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           Q +    K  IWDTAG ER+RA+   YYRG+  A++VYD+TK  TF  +  W++ELR H 
Sbjct: 49  QYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHG 108
Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
             +IV+ + GNK DL  +R V   DA+ YA+     F+ETSA  AIN+ + F  I
Sbjct: 109 PPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 163

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  109 bits (272), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 78/114 (68%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           +E RT++ Q+WDTAGQER+R++  +Y R +  A++VYD+T   +F   S+W+ ++R    
Sbjct: 58  LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG 117
Query: 74  SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
           S+++IM++GNKTDL   R V+TE+ +  A+   + FIETSA    NV++ F+ +
Sbjct: 118 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 47/122 (38%), Positives = 82/122 (67%), Gaps = 1/122 (0%)
Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           ++ G+ I+ QIWDTAGQER+ +ITSAYYR A G +LVYD+TK  TF+++ +W+K +  +A
Sbjct: 69  ELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYA 128
Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAER-EGLSFIETSALEAINVEKAFQTILSEI 131
             +  ++++GNK D +  R +  +  + +A++  G+ F E SA +  NV++ F  ++ +I
Sbjct: 129 SEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188
Query: 132 YR 133
            +
Sbjct: 189 LK 190

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  107 bits (268), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 78/114 (68%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           +E RTI+ Q+WDTAGQER+R++  +Y R +  A++VYD+T   +F+  ++W+ ++R    
Sbjct: 50  LEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG 109
Query: 74  SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
           S+++IM++GNKTDL   R V+ E+ +  A+   + FIETSA    NV++ F+ +
Sbjct: 110 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  107 bits (266), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 58/146 (39%), Positives = 88/146 (60%), Gaps = 6/146 (4%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           V+ R +  QIWDTAGQER++++  A+YRGA   +LV+DVT P TF+ +  W  E    A 
Sbjct: 52  VDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQAS 111
Query: 74  ----SNIVIMMIGNKTDLKHLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAFQTIL 128
                N   +++GNK DL++ R VAT+ AQ++   +  + + ETSA EAINVE+AFQTI 
Sbjct: 112 PRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170
Query: 129 SEIYRIISKKSLSSGEPAPSNIKEGQ 154
               +  ++  L +  P P  + + +
Sbjct: 171 RNALKQETEVELYNEFPEPIKLDKNE 196

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  107 bits (266), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 79/118 (66%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           +E RT++ Q+WDTAGQER+R++  +Y R +  A++VYD+T   +F+  S+W+ ++R    
Sbjct: 46  LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERG 105
Query: 74  SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+++IM++GNKTDL   R +  E+ +  A+   + FIETSA    NV++ F+ + S +
Sbjct: 106 SDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASAL 163

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  106 bits (265), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 51/123 (41%), Positives = 82/123 (66%), Gaps = 1/123 (0%)
Query: 16  GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS- 74
           G+ I  Q+WDTAG ER+R++T+A++R A+G LL++D+T   +F NV  W+ +L+ HA S 
Sbjct: 67  GQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSE 126
Query: 75  NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI 134
           N  I++ GNK+DL+  RAV  E+A+  AE+ G+ + ETSA    N+  A + +L  I + 
Sbjct: 127 NPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKR 186
Query: 135 ISK 137
           + +
Sbjct: 187 MER 189

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/139 (41%), Positives = 84/139 (60%), Gaps = 6/139 (4%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           V+ R +  QIWDTAGQER++++  A+YRGA   +LV+DVT P TF+ +  W  E    A 
Sbjct: 52  VDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQAS 111
Query: 74  ----SNIVIMMIGNKTDLKHLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAFQTIL 128
                N   +++GNK D ++ R VAT+ AQ++   +  + + ETSA EAINVE+AFQTI 
Sbjct: 112 PRDPENFPFVVLGNKIDFEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170
Query: 129 SEIYRIISKKSLSSGEPAP 147
               +  ++  L +  P P
Sbjct: 171 RNALKQETEVELYNEFPEP 189

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/118 (45%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Query: 17  RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNI 76
            T+K +IWDTAGQER+ ++   YYR A  AL+VYDVTKP +F     W+KEL + A  +I
Sbjct: 50  HTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDI 109
Query: 77  VIMMIGNKTDLKH---LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           +I ++GNK D       R VA E+ +  AE +GL F ETSA    NV   F  I  +I
Sbjct: 110 IIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 78/114 (68%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           +E RT++ Q+WDTAGQER+R++  +Y R +  A++VYD+T   +F+  ++W+ ++R    
Sbjct: 45  LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG 104
Query: 74  SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
           S+++IM++GNKTDL   R V+ E+ +  A+   + FIETSA    NV++ F+ +
Sbjct: 105 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 158

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 77/114 (67%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           +E RTI+ Q+WDTAG ER+R++  +Y R +  A++VYD+T   +F+  ++W+ ++R    
Sbjct: 57  LEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG 116
Query: 74  SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
           S+++IM++GNKTDL   R V+ E+ +  A+   + FIETSA    NV++ F+ +
Sbjct: 117 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 170

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/119 (46%), Positives = 78/119 (65%), Gaps = 6/119 (5%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           V+ R +  QIWDTAGQER++++  A+YRGA   +LV+DVT P TF+ +  W  E    A 
Sbjct: 52  VDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQAS 111
Query: 74  ----SNIVIMMIGNKTDLKHLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAFQTI 127
                N   +++GNK DL++ R VAT+ AQ++   +  + + ETSA EAINVE+AFQTI
Sbjct: 112 PRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  103 bits (258), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 57/139 (41%), Positives = 84/139 (60%), Gaps = 6/139 (4%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           V+ R +  QIWDTAG ER++++  A+YRGA   +LV+DVT P TF+ +  W  E    A 
Sbjct: 52  VDDRLVTMQIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQAS 111
Query: 74  ----SNIVIMMIGNKTDLKHLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAFQTIL 128
                N   +++GNK DL++ R VAT+ AQ++   +  + + ETSA EAINVE+AFQTI 
Sbjct: 112 PRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170
Query: 129 SEIYRIISKKSLSSGEPAP 147
               +  ++  L +  P P
Sbjct: 171 RNALKQETEVELYNEFPEP 189

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  103 bits (258), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 77/114 (67%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           +E RT++ Q+WDTAG ER+R++  +Y R +  A++VYD+T   +F+  ++W+ ++R    
Sbjct: 60  LEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG 119
Query: 74  SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
           S+++IM++GNKTDL   R V+ E+ +  A+   + FIETSA    NV++ F+ +
Sbjct: 120 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 173

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  103 bits (258), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 77/116 (66%), Gaps = 1/116 (0%)
Query: 19  IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIV 77
           +  Q+WDTAGQER+R++T+A++R A+G LL++D+T   +F NV  W+ +L+ +A   N  
Sbjct: 84  VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD 143
Query: 78  IMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133
           I++IGNK DL   R V    A+  A++ G+ + ETSA    NVEKA +T+L  I +
Sbjct: 144 IVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK 199

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  103 bits (257), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 87/153 (56%), Gaps = 3/153 (1%)
Query: 19  IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIV 77
           +  Q+WDTAG ER+R++T+A++R A+G LL++D+T   +F NV  W+ +L+ +A   N  
Sbjct: 70  VHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD 129
Query: 78  IMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISK 137
           I++IGNK DL   R V    A+  AE+ G+ + ETSA    NVEK+ +T+L  I + + K
Sbjct: 130 IVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEK 189
Query: 138 KSLSSGEPAPSNIKEGQTIVVGGASEANTKKPC 170
                    P  +  G +  + G   A  K  C
Sbjct: 190 --CVEKTQVPDTVNGGNSGKLDGEKPAEKKCAC 220

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  103 bits (257), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 77/114 (67%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           +E RT++ Q+WDTAG ER+R++  +Y R +  A++VYD+T   +F+  ++W+ ++R    
Sbjct: 50  LEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG 109
Query: 74  SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
           S+++IM++GNKTDL   R V+ E+ +  A+   + FIETSA    NV++ F+ +
Sbjct: 110 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 70/113 (61%)
Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
             + G+ +   IWDTAGQER+ A+   YYR + GA+LVYD+T   +F+ V  W+KELR  
Sbjct: 62  LNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKM 121
Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
             + I + ++GNK DL+  R V+ ++A+SYAE  G     TSA +   +E+ F
Sbjct: 122 LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 174

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 70/113 (61%)
Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
             + G+ +   IWDTAGQER+ A+   YYR + GA+LVYD+T   +F+ V  W+KELR  
Sbjct: 48  LNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKM 107
Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
             + I + ++GNK DL+  R V+ ++A+SYAE  G     TSA +   +E+ F
Sbjct: 108 LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  101 bits (251), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 70/113 (61%)
Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
             + G+ +   IWDTAGQER+ A+   YYR + GA+LVYD+T   +F+ V  W+KELR  
Sbjct: 48  LNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKM 107
Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
             + I + ++GNK DL+  R V+ ++A+SYAE  G     TSA +   +E+ F
Sbjct: 108 LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  101 bits (251), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 78/120 (65%), Gaps = 1/120 (0%)
Query: 19  IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIV 77
           +  Q+WDTAG ER+R++T+A++R A+G LL++D+T   +F NV  W+ +L+ +A   N  
Sbjct: 70  VHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD 129
Query: 78  IMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISK 137
           I++IGNK DL   R V    A+  AE+ G+ + ETSA    NVEK+ +T+L  I + + K
Sbjct: 130 IVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEK 189

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 99.4 bits (246), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 43/80 (53%), Positives = 61/80 (76%)
Query: 8   KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
           K+   +++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E
Sbjct: 36  KIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE 95
Query: 68  LRDHADSNIVIMMIGNKTDL 87
           +  +A  N+  +++GNK DL
Sbjct: 96  IDRYASENVNKLLVGNKCDL 115

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/126 (39%), Positives = 79/126 (62%), Gaps = 6/126 (4%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRD 70
           D +V+G  +  QIWDTAGQER+R++ + +YRG+   LL + V    +F+N+S W KE   
Sbjct: 52  DLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIY 111
Query: 71  HAD----SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQ 125
           +AD     +   +++GNKTD+K  R V+TE+AQ++ +  G   + ETSA ++ NV  AF+
Sbjct: 112 YADVKEPESFPFVILGNKTDIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFE 170
Query: 126 TILSEI 131
             +  I
Sbjct: 171 EAVRRI 176

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 52/119 (43%), Positives = 70/119 (58%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           V+G   K  IWDTAGQER+R +T +YYRGA G +LVYDVT+  TF  +  WL EL  +  
Sbjct: 59  VDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT 118
Query: 74  SN-IVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
            N IV  ++GNK D K  R V   +   +A +    FIE SA     V+ AF+ ++ +I
Sbjct: 119 RNDIVNXLVGNKID-KENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKI 176

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 96.7 bits (239), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 73/116 (62%), Gaps = 1/116 (0%)
Query: 19  IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIV 77
           +  Q+WDTAG ER+R++T+A++R A G LL +D+T   +F NV  W  +L+ +A   N  
Sbjct: 70  VHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPD 129
Query: 78  IMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133
           I++IGNK DL   R V    A+  AE+ G+ + ETSA    NVEK+ +T+L  I +
Sbjct: 130 IVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXK 185

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 96.3 bits (238), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 73/116 (62%), Gaps = 1/116 (0%)
Query: 19  IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIV 77
           +  Q+WDTAG ER+R++T+A++R A G LL +D+T   +F NV  W  +L+ +A   N  
Sbjct: 70  VHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPD 129
Query: 78  IMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133
           I++IGNK DL   R V    A+  AE+ G+ + ETSA    NVEK+ +T+L  I +
Sbjct: 130 IVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXK 185

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 72/113 (63%)
Query: 19  IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVI 78
           ++ Q+WDTAGQER+R++  +Y R +  A++VYD+T   +FEN ++W++++ +    +++I
Sbjct: 50  VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVII 109
Query: 79  MMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
            ++GNKTDL  LR V  E+    A+     F ETSA    N++  F+   S++
Sbjct: 110 ALVGNKTDLGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 94.0 bits (232), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 74/120 (61%), Gaps = 6/120 (5%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRD 70
           D +V+G  +  QIWDTAGQER+R++ + +YRG+   LL + V    +F+N+S W KE   
Sbjct: 50  DLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIY 109
Query: 71  HAD----SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQ 125
           +AD     +   +++GNK D+   R V+TE+AQ++    G   + ETSA +A NV  AF+
Sbjct: 110 YADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFE 168

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 94.0 bits (232), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 74/120 (61%), Gaps = 6/120 (5%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRD 70
           D +V+G  +  QIWDTAGQER+R++ + +YRG+   LL + V    +F+N+S W KE   
Sbjct: 48  DLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIY 107
Query: 71  HAD----SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQ 125
           +AD     +   +++GNK D+   R V+TE+AQ++    G   + ETSA +A NV  AF+
Sbjct: 108 YADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFE 166

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 93.2 bits (230), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 49/126 (38%), Positives = 76/126 (60%), Gaps = 6/126 (4%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRD 70
           D +V+GR +  QIWDTAGQER++++ + +YRGA   LL + V    +FEN+  W KE   
Sbjct: 48  DLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIY 107
Query: 71  HAD----SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQ 125
           +AD     +   +++GNK D K  R V TE+AQ++    G   ++ETSA +  NV  AF+
Sbjct: 108 YADVKDPEHFPFVVLGNKVD-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFE 166
Query: 126 TILSEI 131
             + ++
Sbjct: 167 EAVRQV 172

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 92.8 bits (229), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 47/117 (40%), Positives = 69/117 (58%), Gaps = 3/117 (2%)
Query: 19  IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVI 78
           IK  IWDTAGQERY +I   YYRGA  A++V+D++   T +    W+ +L+    SN +I
Sbjct: 93  IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLK--ISSNYII 150
Query: 79  MMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII 135
           +++ NK D K+   V   + Q YA+   L FI+TSA    N++  F  +  EIY+ I
Sbjct: 151 ILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 71/132 (53%), Gaps = 11/132 (8%)
Query: 11  DFQ-----VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWL 65
           DFQ     V+G     Q+WDTAGQER+R+I  +Y+R A G LL+YDVT   +F N+  W+
Sbjct: 64  DFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWV 123
Query: 66  KELRDHADSNIVIMMIGNKTDLKHLRA------VATEDAQSYAEREGLSFIETSALEAIN 119
             + D A   + IM++GNK D++   A      V     +  A   G  F ETSA +  N
Sbjct: 124 DMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN 183
Query: 120 VEKAFQTILSEI 131
           + +A   +  E+
Sbjct: 184 IVEAVLHLAREV 195

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 69/112 (61%), Gaps = 6/112 (5%)
Query: 22  QIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSN----IV 77
           Q+WDTAGQER++++  A+YRGA   +LVYDVT  ++FEN+  W  E   HA+ N      
Sbjct: 61  QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP 120
Query: 78  IMMIGNKTDLKHLRAVATE-DAQSYAEREG-LSFIETSALEAINVEKAFQTI 127
            +++GNK D +  + + +E  AQ  A+  G +    TSA  AINV+ AF+ I
Sbjct: 121 FVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEI 172

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 72/123 (58%), Gaps = 5/123 (4%)
Query: 14  VEGRTIKAQIWDTAGQERYR-AITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           ++G  IK Q+WDTAGQER+R ++   YYR     + VYD+T   +F ++  W++E + H 
Sbjct: 64  IDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHL 123
Query: 73  DSN-IVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSAL---EAINVEKAFQTIL 128
            +N I  +++GNK DL+    V T+ AQ +A+   +   ETSA    +  +VE  F T+ 
Sbjct: 124 LANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 183
Query: 129 SEI 131
            ++
Sbjct: 184 HKL 186

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 74/119 (62%), Gaps = 1/119 (0%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDHA 72
           ++G  ++  I DTAGQE Y AI   Y+R   G L V+ +T+  +F   + + ++ LR   
Sbjct: 57  LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE 116
Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           D N+  +++GNK+DL+  R V+ E+A++ AE+  ++++ETSA    NV+K F  ++ EI
Sbjct: 117 DENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 74/119 (62%), Gaps = 1/119 (0%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDHA 72
           ++G  ++  I DTAGQE Y AI   Y+R   G L V+ +T+  +F   + + ++ LR   
Sbjct: 61  LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE 120
Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           D N+  +++GNK+DL+  R V+ E+A++ AE+  ++++ETSA    NV+K F  ++ EI
Sbjct: 121 DENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 74/119 (62%), Gaps = 1/119 (0%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDHA 72
           ++G  ++  I DTAGQE Y AI   Y+R   G L V+ +T+  +F   + + ++ LR   
Sbjct: 49  LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE 108
Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           D N+  +++GNK+DL+  R V+ E+A++ AE+  ++++ETSA    NV+K F  ++ EI
Sbjct: 109 DENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 84.0 bits (206), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 70/123 (56%), Gaps = 5/123 (4%)
Query: 14  VEGRTIKAQIWDTAGQERYR-AITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           ++G  IK Q+WDTAGQER+R ++   YYR     + VYD T   +F ++  W++E + H 
Sbjct: 73  IDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHL 132
Query: 73  DSN-IVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSAL---EAINVEKAFQTIL 128
            +N I  +++GNK DL+    V T+ AQ +A+       ETSA    +  +VE  F T+ 
Sbjct: 133 LANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLA 192
Query: 129 SEI 131
            ++
Sbjct: 193 HKL 195

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 74/119 (62%), Gaps = 1/119 (0%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDHA 72
           ++G  ++  I DTAGQE Y AI   Y+R   G L V+ +T+  +F   + + ++ LR   
Sbjct: 47  LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE 106
Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           D N+  +++GNK+DL+  R V+ E+A++ A++  ++++ETSA    NV+K F  ++ EI
Sbjct: 107 DENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 80.9 bits (198), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 73/119 (61%), Gaps = 1/119 (0%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDHA 72
           ++G  ++  I DTAG E Y AI   Y+R   G L V+ +T+  +F   + + ++ LR   
Sbjct: 49  LDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE 108
Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           D N+  +++GNK+DL+  R V+ E+A++ AE+  ++++ETSA    NV+K F  ++ EI
Sbjct: 109 DENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 70/128 (54%), Gaps = 9/128 (7%)
Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           QV    ++  +WDTAGQE + AIT AYYRGA   +LV+  T   +FE +S W +++    
Sbjct: 48  QVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV 107
Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
             +I   ++ NK DL     +  E+A+  A+R  L F  TS  E +NV        SE++
Sbjct: 108 -GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNV--------SEVF 158
Query: 133 RIISKKSL 140
           + +++K L
Sbjct: 159 KYLAEKHL 166

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 74/120 (61%), Gaps = 2/120 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDHA 72
           ++G  ++  I DTAG E Y AI   Y+R   G LLV+ +T+  +F   + + ++ LR  A
Sbjct: 50  LDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKA 109
Query: 73  DSN-IVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           + + I ++++GNK+DL+  R V  E+A+S AE  G+ ++ETSA    NV+K F  ++ EI
Sbjct: 110 EEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 80.1 bits (196), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 74/120 (61%), Gaps = 2/120 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDHA 72
           ++G  ++  I DTAG E Y AI   Y+R   G LLV+ +T+  +F   + + ++ LR  A
Sbjct: 46  LDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKA 105
Query: 73  DSN-IVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           + + I ++++GNK+DL+  R V  E+A+S AE  G+ ++ETSA    NV+K F  ++ EI
Sbjct: 106 EEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++  + ++++   D
Sbjct: 47  IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD 106
Query: 74  S-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S ++ ++++GNK+DL   R V T+ AQ  A   G+ FIETSA     V+ AF T++ EI
Sbjct: 107 SEDVPMVLVGNKSDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 72/135 (53%), Gaps = 2/135 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 46  IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
           S+ V M ++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI 
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
Query: 133 RIISKKSLSSGEPAP 147
           +   +K     E  P
Sbjct: 165 QHKLRKLNPPDESGP 179

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++  + ++++   D
Sbjct: 47  IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD 106
Query: 74  S-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S ++ ++++GNK DL   R V T+ AQ  A   G+ FIETSA     V+ AF T++ EI
Sbjct: 107 SEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++  + ++++   D
Sbjct: 47  IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD 106
Query: 74  S-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S ++ ++++GNK+DL   R V T+ AQ  A   G+ FIETSA     V+ AF T++ EI
Sbjct: 107 SEDVPMVLVGNKSDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++  + ++++   D
Sbjct: 47  IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD 106
Query: 74  S-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S ++ ++++GNK+DL   R V T+ AQ  A   G+ FIETSA     V+ AF T++ EI
Sbjct: 107 SEDVPMVLVGNKSDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDHA 72
           ++ R  +  I DTAGQE + A+   Y R   G LLV+ VT   +FE + ++ ++ LR   
Sbjct: 48  IDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKD 107
Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
                +++IGNK DL H R V  E+ Q  A +  ++++E SA   +NV++AF     E+ 
Sbjct: 108 RDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFH----ELV 163
Query: 133 RIISK 137
           R+I K
Sbjct: 164 RVIRK 168

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 46  IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GNK+DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKSDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 77.0 bits (188), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 53  IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 112
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct: 113 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 170

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 77.0 bits (188), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 52  IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 111
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct: 112 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 169

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 76.6 bits (187), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 51  IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 110
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct: 111 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 76.6 bits (187), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 51  IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 110
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct: 111 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 76.6 bits (187), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 46  IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 76.6 bits (187), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 46  IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLAG-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 76.6 bits (187), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 46  IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 76.6 bits (187), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 46  IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 76.3 bits (186), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 46  IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 76.3 bits (186), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 46  IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 76.3 bits (186), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 46  IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 76.3 bits (186), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 46  IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 76.3 bits (186), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 46  IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 76.3 bits (186), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 46  IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 76.3 bits (186), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 46  IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 76.3 bits (186), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 46  IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 76.3 bits (186), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 46  IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 76.3 bits (186), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 46  IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 76.3 bits (186), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 46  IDGETCLLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 76.3 bits (186), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAG E Y A+   Y R   G L V+ +    +FE++  + ++++   D
Sbjct: 64  IDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD 123
Query: 74  S-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S ++ ++++GNK DL   R V T+ AQ  A   G+ FIETSA     V+ AF T++ EI
Sbjct: 124 SEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 181

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/126 (37%), Positives = 70/126 (55%), Gaps = 2/126 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAGQE Y A+   Y R   G L V+ +    +F +++ + ++++   D
Sbjct: 64  IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD 123
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
           S+ V M ++GNK DL   R V T+ A   A+  G+ FIETSA     VE AF T++ EI 
Sbjct: 124 SDDVPMVLVGNKCDLP-TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 182
Query: 133 RIISKK 138
           +   KK
Sbjct: 183 QYRMKK 188

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 46  IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GN+ DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNRCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 19  IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRW---LKELRDHADSN 75
           +  QIWD  GQ     +   Y  GA G LLVYD+T   +FEN+  W   +K++ + +++ 
Sbjct: 56  VTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQ 115
Query: 76  IVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI 134
            ++ ++GNK DL+H+R +  E    + +  G S    SA    +V   FQ + +EI  I
Sbjct: 116 PLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI 174

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DT GQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 46  IDGETCLLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 46  IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ E 
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREF 163

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAG+E Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 46  IDGETCLLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAG E Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 46  IDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DT GQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 46  IDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G      I DTAGQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 46  IDGEICLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 60/110 (54%)
Query: 15  EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS 74
           +G  IK  +WDTAGQE+   +   YY GA GA+L +DVT   T +N++RW+KE +    +
Sbjct: 57  QGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGN 116
Query: 75  NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
              I++  NK D+K+ + ++ +      + +   + E SA  A N    F
Sbjct: 117 EAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF 166

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAG E Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 51  IDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 110
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct: 111 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTA QE Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 46  IDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKXDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTA QE Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 46  IDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKXDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 73.2 bits (178), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAG E Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 46  IDGETCLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 73.2 bits (178), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 15/131 (11%)
Query: 9   LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKE 67
           + + QV+G+ +   IWDTAGQ+ Y  +   +Y  A   LL +DVT P +F+N+ +RW  E
Sbjct: 72  MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPE 131
Query: 68  LRDHADSNIVIMMIGNKTDLKH------------LRAVATEDAQSYAEREG-LSFIETSA 114
           + +H    + I+++G KTDL+             L  V     Q  A   G ++++E SA
Sbjct: 132 V-NHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSA 190
Query: 115 LEAINVEKAFQ 125
               NV   FQ
Sbjct: 191 RLHDNVHAVFQ 201

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 73.2 bits (178), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAG E Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 46  IDGETCLLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 73.2 bits (178), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAG E Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 46  IDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 72.8 bits (177), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAG E Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 46  IDGETXLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 72.8 bits (177), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAG E Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 46  IDGETCLLDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAGQE   A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct: 46  IDGETCLLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74  SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           S+ V M ++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
Query: 23  IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDHADSNIVIMMI 81
           + DTAGQE + A+   Y R   G L+VY VT   +FE+V R+ +  LR     +  ++++
Sbjct: 70  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129
Query: 82  GNKTDLKHLRAVATEDAQSYAEREGLSFIETSALE-AINVEKAFQTILSEI 131
            NK DL HLR V  +  +  A +  + +IETSA +  +NV+K F  ++  I
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
Query: 23  IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDHADSNIVIMMI 81
           + DTAGQE + A+   Y R   G L+VY VT   +FE+V R+ +  LR     +  ++++
Sbjct: 70  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129
Query: 82  GNKTDLKHLRAVATEDAQSYAEREGLSFIETSALE-AINVEKAFQTILSEI 131
            NK DL HLR V  +  +  A +  + +IETSA +  +NV+K F  ++  I
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
Query: 23  IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDHADSNIVIMMI 81
           + DTAGQE + A+   Y R   G L+VY VT   +FE+V R+ +  LR     +  ++++
Sbjct: 70  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129
Query: 82  GNKTDLKHLRAVATEDAQSYAEREGLSFIETSALE-AINVEKAFQTILSEI 131
            NK DL HLR V  +  +  A +  + +IETSA +  +NV+K F  ++  I
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
Query: 23  IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDHADSNIVIMMI 81
           + DTAGQE + A+   Y R   G L+VY VT   +FE+V R+ +  LR     +  ++++
Sbjct: 65  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 124
Query: 82  GNKTDLKHLRAVATEDAQSYAEREGLSFIETSALE-AINVEKAFQTILSEI 131
            NK DL HLR V  +  +  A +  + +IETSA +  +NV+K F  ++  I
Sbjct: 125 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 175

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
           F      IK  +WDTAGQE+Y  +   YY  A  A++++DVT   T++NV  W ++L   
Sbjct: 52  FHTNRGPIKFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-R 110
Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
              NI I++ GNK D+K  +  A   +  +  ++ L + + SA    N EK F
Sbjct: 111 VCENIPIVLCGNKVDIKDRKVKAK--SIVFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
           F      IK  +WDTAGQE++  +   YY  A  A++++DVT   T++NV  W ++L   
Sbjct: 52  FHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-R 110
Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
              NI I++ GNK D+K  +  A   +  +  ++ L + + SA    N EK F
Sbjct: 111 VCENIPIVLCGNKVDIKDRKVKAK--SIVFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
           F      IK  +WDTAGQE++  +   YY  A  A++++DVT   T++NV  W ++L   
Sbjct: 57  FHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-R 115
Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
              NI I++ GNK D+K  +  A   +  +  ++ L + + SA    N EK F
Sbjct: 116 VCENIPIVLCGNKVDIKDRKVKAK--SIVFHRKKNLQYYDISAKSNYNFEKPF 166

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
           F      IK  +WDTAGQE++  +   YY  A  A++++DVT   T++NV  W ++L   
Sbjct: 52  FHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-R 110
Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
              NI I++ GNK D+K  +  A   +  +  ++ L + + SA    N EK F
Sbjct: 111 VCENIPIVLCGNKVDIKDRKVKAK--SIVFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
           F      IK  +WDTAGQE++  +   YY  A  A++++DVT   T++NV  W ++L   
Sbjct: 52  FHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 111
Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
            + NI I++ GNK D+K  +  A   +  +  ++ L + + SA    N EK F
Sbjct: 112 CE-NIPIVLCGNKVDIKDRKVKAK--SIVFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
           F      IK  +WDTAGQE++  +   YY  A  A++++DVT   T++NV  W ++L   
Sbjct: 52  FHTNRGPIKFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-R 110
Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
              NI I++ GNK D+K  +  A   +  +  ++ L + + SA    N EK F
Sbjct: 111 VCENIPIVLCGNKVDIKDRKVKAK--SIVFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
           F      IK  +WDTAGQE++  +   YY  A  A++++DVT   T++NV  W ++L   
Sbjct: 57  FHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-R 115
Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
              NI I++ GNK D+K  +  A   +  +  ++ L + + SA    N EK F
Sbjct: 116 VCENIPIVLCGNKVDIKDRKVKAK--SIVFHRKKNLQYYDISAKSNYNFEKPF 166

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
           F      IK  +WDTAGQE++  +   YY  A  A++++DVT   T++NV  W ++L   
Sbjct: 52  FHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-R 110
Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
              NI I++ GNK D+K  +  A   +  +  ++ L + + SA    N EK F
Sbjct: 111 VCENIPIVLCGNKVDIKDRKVKAK--SIVFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 70.1 bits (170), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
           F      IK  +WDTAGQE++  +   YY  A  A++++DVT   T++NV  W ++L   
Sbjct: 52  FHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 111
Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
            + NI I++ GNK D+K  +  A   +  +  ++ L + + SA    N EK F
Sbjct: 112 CE-NIPIVLCGNKVDIKDRKVKAK--SIVFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 70.1 bits (170), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
           F      IK  +WDTAGQE++  +   YY  A  A++++DVT   T++NV  W ++L   
Sbjct: 45  FHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-R 103
Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
              NI I++ GNK D+K  +  A   +  +  ++ L + + SA    N EK F
Sbjct: 104 VCENIPIVLCGNKVDIKDRKVKAK--SIVFHRKKNLQYYDISAKSNYNFEKPF 154

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 69.7 bits (169), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
           F      IK  +WDTAGQE++  +   YY  A  A++ +DVT   T++NV  W ++L   
Sbjct: 52  FHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLV-R 110
Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
              NI I++ GNK D+K  +  A   +  +  ++ L + + SA    N EK F
Sbjct: 111 VCENIPIVLCGNKVDIKDRKVKAK--SIVFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 66/125 (52%), Gaps = 3/125 (2%)
Query: 8   KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
           K+C   V+G   +  I DTAGQE + A+   Y R   G LLV+ +    +F  V +   +
Sbjct: 48  KIC--SVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQ 105
Query: 68  -LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQT 126
            LR     +  ++++GNK DL+  R V   +A ++     +++ E SA   +NV++AF+ 
Sbjct: 106 ILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQ 165
Query: 127 ILSEI 131
           ++  +
Sbjct: 166 LVRAV 170

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 3/106 (2%)
Query: 19  IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVI 78
           IK  +WDTAG E++  +   YY  A  A++++DVT   T++NV  W ++L      NI I
Sbjct: 61  IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPI 119
Query: 79  MMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
           ++ GNK D+K  +  A     ++  ++ L + + SA    N EK F
Sbjct: 120 VLCGNKVDVKERKVKAK--TITFHRKKNLQYYDISAKSNYNFEKPF 163

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 19  IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVI 78
           IK  +WDTAG E++  +   YY  A  A++++DVT   T++NV  W ++L    + NI I
Sbjct: 54  IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPI 112
Query: 79  MMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
           ++ GNK D+K  +  A     ++  ++ L + + SA    N EK F
Sbjct: 113 VLCGNKVDVKERKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPF 156

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
           F      IK  +WDTAG E++  +   YY  A  A++++DVT   T++NV  W ++L   
Sbjct: 48  FHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 107
Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
            + NI I++ GNK D+K  +  A   +  +  ++ L + + SA    N EK F
Sbjct: 108 CE-NIPIVLCGNKVDIKDRKVKAK--SIVFHRKKNLQYYDISAKSNYNFEKPF 157

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 19  IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVI 78
           IK  +WDTAG E++  +   YY  A  A++++DVT   T++NV  W ++L    + NI I
Sbjct: 53  IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPI 111
Query: 79  MMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
           ++ GNK D+K  +  A     ++  ++ L + + SA    N EK F
Sbjct: 112 VLCGNKVDVKERKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPF 155

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
           F      IK  +WDTAG E++  +   YY  A  A++++DVT   T++NV  W ++L   
Sbjct: 54  FHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 113
Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
            + NI I++ GNK D+K  +  A   +  +  ++ L + + SA    N EK F
Sbjct: 114 CE-NIPIVLCGNKVDIKDRKVKAK--SIVFHRKKNLQYYDISAKSNYNFEKPF 163

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
           F      IK  +WDTAG E++  +   YY  A  A++++DVT   T++NV  W ++L   
Sbjct: 52  FHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-R 110
Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
              NI I++ GNK D+K  +  A   +  +  ++ L + + SA    N EK F
Sbjct: 111 VCENIPIVLCGNKVDIKDRKVKAK--SIVFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 67.0 bits (162), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 2/123 (1%)
Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDH 71
           +V+ +    +I DTAG E++ A+   Y +   G  LVY +T  +TF ++    ++ LR  
Sbjct: 45  EVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK 104
Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAER-EGLSFIETSALEAINVEKAFQTILSE 130
              ++ ++++GNK DL+  R V  E  Q+ A +    +F+E+SA   INV + F  ++ +
Sbjct: 105 DTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQ 164
Query: 131 IYR 133
           I R
Sbjct: 165 INR 167

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 67.0 bits (162), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 2/123 (1%)
Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDH 71
           +V+ +    +I DTAG E++ A+   Y +   G  LVY +T  +TF ++    ++ LR  
Sbjct: 47  EVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK 106
Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAER-EGLSFIETSALEAINVEKAFQTILSE 130
              ++ ++++GNK DL+  R V  E  Q+ A +    +F+E+SA   INV + F  ++ +
Sbjct: 107 DTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQ 166
Query: 131 IYR 133
           I R
Sbjct: 167 INR 169

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 69/132 (52%), Gaps = 15/132 (11%)
Query: 9   LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKE 67
           + D +V+G+ ++  +WDTAGQE Y  +    Y      L+ + V  P + EN+  +W+ E
Sbjct: 63  VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPE 122
Query: 68  LRDHADSNIVIMMIGNKTDLK---HLR---------AVATEDAQSYAER-EGLSFIETSA 114
           ++ H   N+ I+++ NK DL+   H+R          V T+D ++ A R +   ++E SA
Sbjct: 123 VK-HFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 181
Query: 115 LEAINVEKAFQT 126
                V + F+T
Sbjct: 182 KTKEGVREVFET 193

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 2/123 (1%)
Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDH 71
           +V+ +    +I DTAG E++ A+   Y +   G  LVY +T  +TF ++    ++ LR  
Sbjct: 45  EVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK 104
Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAERE-GLSFIETSALEAINVEKAFQTILSE 130
              ++ ++++GNK DL+  R V  E  Q+ A +    +F+E+SA   INV + F  ++ +
Sbjct: 105 DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQ 164
Query: 131 IYR 133
           I R
Sbjct: 165 INR 167

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 2/123 (1%)
Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDH 71
           +V+ +    +I DTAG E++ A+   Y +   G  LVY +T  +TF ++    ++ LR  
Sbjct: 45  EVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK 104
Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAERE-GLSFIETSALEAINVEKAFQTILSE 130
              ++ ++++GNK DL+  R V  E  Q+ A +    +F+E+SA   INV + F  ++ +
Sbjct: 105 DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQ 164
Query: 131 IYR 133
           I R
Sbjct: 165 INR 167

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Query: 22  QIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRD-HADSNIVIMM 80
            + DTAGQ+ Y  +  ++  G  G +LVY VT   +F+ +    ++L + H  + + +++
Sbjct: 75  HLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVL 134
Query: 81  IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI 134
           +GNK DL   R V   + +  AE  G +F+E+SA E    +  F  ++ EI R+
Sbjct: 135 VGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARV 188

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 15/125 (12%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHA 72
           V+GR ++ Q+ DTAGQ+ +  +    Y      LL + V  P++F+NVS +W+ E+R H 
Sbjct: 63  VDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC 122
Query: 73  DSNIVIMMIGNKTDLKH------------LRAVATEDAQSYAER-EGLSFIETSALEAIN 119
                I+++G ++DL+              + V  E A+  AE  +  S+IE SAL   N
Sbjct: 123 -PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKN 181
Query: 120 VEKAF 124
           +++ F
Sbjct: 182 LKEVF 186

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 15/129 (11%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELR 69
           D +V+G+ ++  +WDTAGQE Y  +    Y      L+ + +  P + EN+  +W  E++
Sbjct: 45  DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 104
Query: 70  DHADSNIVIMMIGNKTDLK---HLR---------AVATEDAQSYAEREG-LSFIETSALE 116
            H   N+ I+++GNK DL+   H R          V  E+ +  A R G   ++E SA  
Sbjct: 105 -HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 163
Query: 117 AINVEKAFQ 125
              V + F+
Sbjct: 164 KDGVREVFE 172

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 15/131 (11%)
Query: 9   LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKE 67
           + D +V+G+ ++  +WDTAGQE Y  +    Y      L+ + +  P + EN+  +W  E
Sbjct: 47  VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE 106
Query: 68  LRDHADSNIVIMMIGNKTDLK---HLR---------AVATEDAQSYAEREG-LSFIETSA 114
           ++ H   N+ I+++GNK DL+   H R          V  E+ +  A R G   ++E SA
Sbjct: 107 VK-HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 165
Query: 115 LEAINVEKAFQ 125
                V + F+
Sbjct: 166 KTKDGVREVFE 176

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 15/129 (11%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELR 69
           D +V+G+ ++  +WDTAGQE Y  +    Y      L+ + +  P + EN+  +W  E++
Sbjct: 45  DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 104
Query: 70  DHADSNIVIMMIGNKTDLK---HLR---------AVATEDAQSYAEREG-LSFIETSALE 116
            H   N+ I+++GNK DL+   H R          V  E+ +  A R G   ++E SA  
Sbjct: 105 -HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 163
Query: 117 AINVEKAFQ 125
              V + F+
Sbjct: 164 KDGVREVFE 172

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 15/129 (11%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELR 69
           D +V+G+ ++  +WDTAGQE Y  +    Y      L+ + +  P + EN+  +W  E++
Sbjct: 43  DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 102
Query: 70  DHADSNIVIMMIGNKTDLK---HLR---------AVATEDAQSYAEREG-LSFIETSALE 116
            H   N+ I+++GNK DL+   H R          V  E+ +  A R G   ++E SA  
Sbjct: 103 -HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 161
Query: 117 AINVEKAFQ 125
              V + F+
Sbjct: 162 KDGVREVFE 170

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 11/137 (8%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHA 72
           V+G+ +   +WDTAGQE Y  +    YRGA   +L + +    ++ENV  +W+ ELR  A
Sbjct: 52  VDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA 111
Query: 73  DSNIVIMMIGNKTDLK--------HLRAVATEDAQSYAEREG-LSFIETSALEAINVEKA 123
             N+ I+++G K DL+        H   + +   +   ++ G  ++IE S+    NV+  
Sbjct: 112 -PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAV 170
Query: 124 FQTILSEIYRIISKKSL 140
           F T +  + +   +K +
Sbjct: 171 FDTAIKVVLQPPRRKEV 187

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 9/106 (8%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHA 72
           V+G T+   +WDTAGQE Y  +    YRGA   +L + +    ++ENV+ +W+ ELR +A
Sbjct: 49  VDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA 108
Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAI 118
              + I+++G K DL+       +D Q + +  G   I T+  E +
Sbjct: 109 -PGVPIILVGTKLDLR-------DDKQFFIDHPGAVPITTNQGEEL 146

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 15/129 (11%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELR 69
           D +V+G+ ++  +WDTAGQE Y  +    Y      L+ + +  P + EN+  +W  E++
Sbjct: 45  DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 104
Query: 70  DHADSNIVIMMIGNKTDLK---HLR---------AVATEDAQSYAEREG-LSFIETSALE 116
            H   N+ I+++GNK DL+   H R          V  E+ +  A R G   ++E SA  
Sbjct: 105 -HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 163
Query: 117 AINVEKAFQ 125
              V + F+
Sbjct: 164 KDGVREVFE 172

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 15/129 (11%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELR 69
           D +V+G+ ++  +WDTAGQE Y  +    Y      L+ + +  P + EN+  +W  E++
Sbjct: 47  DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 106
Query: 70  DHADSNIVIMMIGNKTDLK---HLR---------AVATEDAQSYAEREG-LSFIETSALE 116
            H   N+ I+++GNK DL+   H R          V  E+ +  A R G   ++E SA  
Sbjct: 107 -HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 165
Query: 117 AINVEKAFQ 125
              V + F+
Sbjct: 166 KDGVREVFE 174

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 15/129 (11%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELR 69
           D +V+G+ ++  +WDTAGQE Y  +    Y      L+ + +  P + EN+  +W  E++
Sbjct: 43  DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 102
Query: 70  DHADSNIVIMMIGNKTDLK---HLR---------AVATEDAQSYAEREG-LSFIETSALE 116
            H   N+ I+++GNK DL+   H R          V  E+ +  A R G   ++E SA  
Sbjct: 103 -HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 161
Query: 117 AINVEKAFQ 125
              V + F+
Sbjct: 162 KDGVREVFE 170

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 15/131 (11%)
Query: 9   LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKE 67
           + D +V+G+ ++  +WDTAGQE Y  +    Y      L+ + +  P + EN+  +W  E
Sbjct: 45  VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE 104
Query: 68  LRDHADSNIVIMMIGNKTDLK---HLR---------AVATEDAQSYAEREG-LSFIETSA 114
           ++ H   N+ I+++GNK DL+   H R          V  E+ +  A R G   ++E SA
Sbjct: 105 VK-HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 163
Query: 115 LEAINVEKAFQ 125
                V + F+
Sbjct: 164 KTKDGVREVFE 174

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 15/129 (11%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELR 69
           D +V+G+ ++  +WDTAGQE Y  +    Y      L+ + +  P + EN+  +W  E++
Sbjct: 45  DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 104
Query: 70  DHADSNIVIMMIGNKTDLK---HLR---------AVATEDAQSYAEREG-LSFIETSALE 116
            H   N+ I+++GNK DL+   H R          V  E+ +  A R G   ++E SA  
Sbjct: 105 -HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 163
Query: 117 AINVEKAFQ 125
              V + F+
Sbjct: 164 KDGVREVFE 172

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 15/129 (11%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELR 69
           D +V+G+ ++  +WDTAGQE Y  +    Y      L+ + +  P + EN+  +W  E++
Sbjct: 48  DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 107
Query: 70  DHADSNIVIMMIGNKTDLK---HLR---------AVATEDAQSYAEREG-LSFIETSALE 116
            H   N+ I+++GNK DL+   H R          V  E+ +  A R G   ++E SA  
Sbjct: 108 -HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 166
Query: 117 AINVEKAFQ 125
              V + F+
Sbjct: 167 KDGVREVFE 175

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 13/125 (10%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHA 72
           V+G T+   +WDTAGQE Y  +    YRGA   LL + +    ++EN+  +WL EL+ +A
Sbjct: 49  VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYA 108
Query: 73  DSNIVIMMIGNKTDLK--------HLRAVATEDAQSYAERE---GLSFIETSALEAINVE 121
              I I+++G K DL+        H  A +   AQ    R+    + ++E S+    NV+
Sbjct: 109 -PGIPIVLVGTKLDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVK 167
Query: 122 KAFQT 126
             F T
Sbjct: 168 AVFDT 172

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 15/131 (11%)
Query: 9   LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKE 67
           + D +V+G+ ++  +WDTAGQE Y  +    Y      L+ + +  P + EN+  +W  E
Sbjct: 45  VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE 104
Query: 68  LRDHADSNIVIMMIGNKTDLK---HLR---------AVATEDAQSYAEREG-LSFIETSA 114
           ++ H   N+ I+++GNK DL+   H R          V  E+ +  A R G   ++E SA
Sbjct: 105 VK-HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 163
Query: 115 LEAINVEKAFQ 125
                V + F+
Sbjct: 164 KTKDGVREVFE 174

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 15/129 (11%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELR 69
           D +V+G+ ++  +WDTAGQE Y  +    Y      L+ + +  P + EN+  +W  E++
Sbjct: 46  DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 105
Query: 70  DHADSNIVIMMIGNKTDLK---HLR---------AVATEDAQSYAEREG-LSFIETSALE 116
            H   N+ I+++GNK DL+   H R          V  E+ +  A R G   ++E SA  
Sbjct: 106 -HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 164
Query: 117 AINVEKAFQ 125
              V + F+
Sbjct: 165 KDGVREVFE 173

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 15/131 (11%)
Query: 9   LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKE 67
           + D +V+G+ ++  +WDTAGQE Y  +    Y      L+ + +  P + EN+  +W  E
Sbjct: 63  IADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE 122
Query: 68  LRDHADSNIVIMMIGNKTDLK---HLR---------AVATEDAQSYAER-EGLSFIETSA 114
           ++ H   N+ I+++GNK DL+   H R          V +E+ +  A R     ++E SA
Sbjct: 123 VK-HFXPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSA 181
Query: 115 LEAINVEKAFQ 125
                V + F+
Sbjct: 182 KTKEGVREVFE 192

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 15/129 (11%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELR 69
           D +V+G+ ++  +WDTAGQE Y  +    Y      L+ + +  P + EN+  +W  E++
Sbjct: 46  DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 105
Query: 70  DHADSNIVIMMIGNKTDLK---HLR---------AVATEDAQSYAEREG-LSFIETSALE 116
            H   N+ I+++GNK DL+   H R          V  E+ +  A R G   ++E SA  
Sbjct: 106 -HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 164
Query: 117 AINVEKAFQ 125
              V + F+
Sbjct: 165 KDGVREVFE 173

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 15/131 (11%)
Query: 9   LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKE 67
           + D +V+G+ ++  +WDTAGQE Y  +    Y      L+ + +  P + EN+  +W  E
Sbjct: 43  IADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE 102
Query: 68  LRDHADSNIVIMMIGNKTDLK---HLR---------AVATEDAQSYAER-EGLSFIETSA 114
           ++ H   N+ I+++GNK DL+   H R          V +E+ +  A R     ++E SA
Sbjct: 103 VK-HFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSA 161
Query: 115 LEAINVEKAFQ 125
                V + F+
Sbjct: 162 KTKEGVREVFE 172

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 62.8 bits (151), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 15/131 (11%)
Query: 9   LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKE 67
           + D +V+G+ ++  +WDTAGQE Y  +    Y      L+ + +  P + EN+  +W  E
Sbjct: 63  IADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE 122
Query: 68  LRDHADSNIVIMMIGNKTDLK---HLR---------AVATEDAQSYAER-EGLSFIETSA 114
           ++ H   N+ I+++GNK DL+   H R          V +E+ +  A R     ++E SA
Sbjct: 123 VK-HFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSA 181
Query: 115 LEAINVEKAFQ 125
                V + F+
Sbjct: 182 KTKEGVREVFE 192

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           V G+    Q+ DTAGQ+ Y      Y     G +LVY VT   +FE +     +L D   
Sbjct: 49  VNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG 108
Query: 74  S-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE 130
              I IM++GNK DL   R ++ E+ ++ AE    +F+E+SA E       F+ I+ E
Sbjct: 109 KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 19/139 (13%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
           +  V+G+ +   +WDTAGQE Y  +    Y     +L+ + +  P +FENV ++W  E+R
Sbjct: 45  NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR 104
Query: 70  DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
            H   N  I+++G K DL            K L  +      + A+  G + ++E SAL 
Sbjct: 105 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 162
Query: 117 AINVEKAFQTILSEIYRII 135
               ++  +T+  E  R +
Sbjct: 163 ---TQRGLKTVFDEAIRAV 178

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 19/139 (13%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
           +  V+G+ +   +WDTAGQE Y  +    Y     +L+ + +  P +FENV ++W  E+R
Sbjct: 43  NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR 102
Query: 70  DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
            H   N  I+++G K DL            K L  +      + A+  G + ++E SAL 
Sbjct: 103 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 160
Query: 117 AINVEKAFQTILSEIYRII 135
               ++  +T+  E  R +
Sbjct: 161 ---TQRGLKTVFDEAIRAV 176

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 19/139 (13%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
           +  V+G+ +   +WDTAGQE Y  +    Y     +L+ + +  P +FENV ++W  E+R
Sbjct: 47  NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR 106
Query: 70  DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
            H   N  I+++G K DL            K L  +      + A+  G + ++E SAL 
Sbjct: 107 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 164
Query: 117 AINVEKAFQTILSEIYRII 135
               ++  +T+  E  R +
Sbjct: 165 ---TQRGLKTVFDEAIRAV 180

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           V G+    Q+ DTAGQ+ Y      Y     G +LVY VT   +FE +     +L D   
Sbjct: 49  VNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG 108
Query: 74  S-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE 130
              I IM++GNK DL   R ++ E+ ++ AE    +F+E+SA E       F+ I+ E
Sbjct: 109 KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           V G+    Q+ DTAGQ+ Y      Y     G +LVY VT   +FE +     +L D   
Sbjct: 44  VNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG 103
Query: 74  S-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
              I IM++GNK DL   R ++ E+ ++ AE    +F+E+SA E       F+ I+ E  
Sbjct: 104 KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAE 163
Query: 133 RI 134
           +I
Sbjct: 164 KI 165

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 19/139 (13%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
           +  V+G+ +   +WDTAGQE Y  +    Y     +L+ + +  P +FENV ++W  E+R
Sbjct: 43  NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR 102
Query: 70  DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
            H   N  I+++G K DL            K L  +      + A+  G + ++E SAL 
Sbjct: 103 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 160
Query: 117 AINVEKAFQTILSEIYRII 135
               ++  +T+  E  R +
Sbjct: 161 ---TQRGLKTVFDEAIRAV 176

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           V G+    Q+ DTAGQ+ Y      Y     G +LVY VT   +FE +     +L D   
Sbjct: 47  VNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG 106
Query: 74  S-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE 130
              I IM++GNK DL   R ++ E+ ++ AE    +F+E+SA E       F+ I+ E
Sbjct: 107 KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 9/100 (9%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHA 72
           V G T+   +WDTAGQE Y  +    YRGA   +L + +    ++ENVS +W+ EL+ +A
Sbjct: 51  VNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA 110
Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIET 112
              + I+++G K DL+       +D Q + +  G   I T
Sbjct: 111 -PGVPIVLVGTKLDLR-------DDKQFFIDHPGAVPITT 142

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 15/129 (11%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELR 69
           D +V+G+ ++  +WDTAG E Y  +    Y      L+ + +  P + EN+  +W  E++
Sbjct: 48  DIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 107
Query: 70  DHADSNIVIMMIGNKTDLK---HLR---------AVATEDAQSYAEREG-LSFIETSALE 116
            H   N+ I+++GNK DL+   H R          V  E+ +  A R G   ++E SA  
Sbjct: 108 -HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 166
Query: 117 AINVEKAFQ 125
              V + F+
Sbjct: 167 KDGVREVFE 175

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 19/141 (13%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
           +  V+G+ +   +WDTAGQE Y  +    Y      L+ + +  P +FENV ++W  E+R
Sbjct: 43  NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 102
Query: 70  DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
            H   N  I+++G K DL            K L  +      + A+  G + ++E SAL 
Sbjct: 103 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 160
Query: 117 AINVEKAFQTILSEIYRIISK 137
               ++  +T+  E  R + K
Sbjct: 161 ---TQRGLKTVFDEAIRAVLK 178

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 19/139 (13%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
           +  V+G+ +   +WDTAGQE Y  +    Y      L+ + +  P +FENV ++W  E+R
Sbjct: 43  NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 102
Query: 70  DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
            H   N  I+++G K DL            K L  +      + A+  G + ++E SAL 
Sbjct: 103 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 160
Query: 117 AINVEKAFQTILSEIYRII 135
               ++  +T+  E  R +
Sbjct: 161 ---TQRGLKTVFDEAIRAV 176

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 19/139 (13%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
           +  V+G+ +   +WDTAGQE Y  +    Y      L+ + +  P +FENV ++W  E+R
Sbjct: 43  NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 102
Query: 70  DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
            H   N  I+++G K DL            K L  +      + A+  G + ++E SAL 
Sbjct: 103 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 160
Query: 117 AINVEKAFQTILSEIYRII 135
               ++  +T+  E  R +
Sbjct: 161 ---TQRGLKTVFDEAIRAV 176

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 19/139 (13%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
           +  V+G+ +   +WDTAGQE Y  +    Y      L+ + +  P +FENV ++W  E+R
Sbjct: 50  NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 109
Query: 70  DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
            H   N  I+++G K DL            K L  +      + A+  G + ++E SAL 
Sbjct: 110 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 167
Query: 117 AINVEKAFQTILSEIYRII 135
               ++  +T+  E  R +
Sbjct: 168 ---TQRGLKTVFDEAIRAV 183

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 19/139 (13%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
           +  V+G+ +   +WDTAGQE Y  +    Y      L+ + +  P +FENV ++W  E+R
Sbjct: 43  NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 102
Query: 70  DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
            H   N  I+++G K DL            K L  +      + A+  G + ++E SAL 
Sbjct: 103 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 160
Query: 117 AINVEKAFQTILSEIYRII 135
               ++  +T+  E  R +
Sbjct: 161 ---TQRGLKTVFDEAIRAV 176

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 19/139 (13%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
           +  V+G+ +   +WDTAGQE Y  +    Y      L+ + +  P +FENV ++W  E+R
Sbjct: 70  NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 129
Query: 70  DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
            H   N  I+++G K DL            K L  +      + A+  G + ++E SAL 
Sbjct: 130 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 187
Query: 117 AINVEKAFQTILSEIYRII 135
               ++  +T+  E  R +
Sbjct: 188 ---TQRGLKTVFDEAIRAV 203

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 19/139 (13%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
           +  V+G+ +   +WDTAGQE Y  +    Y      L+ + +  P +FENV ++W  E+R
Sbjct: 70  NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 129
Query: 70  DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
            H   N  I+++G K DL            K L  +      + A+  G + ++E SAL 
Sbjct: 130 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 187
Query: 117 AINVEKAFQTILSEIYRII 135
               ++  +T+  E  R +
Sbjct: 188 ---TQRGLKTVFDEAIRAV 203

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 19/139 (13%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
           +  V+G+ +   +WDTAGQE Y  +    Y      L+ + +  P +FENV ++W  E+R
Sbjct: 43  NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 102
Query: 70  DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
            H   N  I+++G K DL            K L  +      + A+  G + ++E SAL 
Sbjct: 103 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 160
Query: 117 AINVEKAFQTILSEIYRII 135
               ++  +T+  E  R +
Sbjct: 161 ---TQRGLKTVFDEAIRAV 176

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 19/139 (13%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
           +  V+G+ +   +WDTAGQE Y  +    Y      L+ + +  P +FENV ++W  E+R
Sbjct: 62  NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 121
Query: 70  DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
            H   N  I+++G K DL            K L  +      + A+  G + ++E SAL 
Sbjct: 122 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 179
Query: 117 AINVEKAFQTILSEIYRII 135
               ++  +T+  E  R +
Sbjct: 180 ---TQRGLKTVFDEAIRAV 195

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 19/139 (13%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
           +  V+G+ +   +WDTAGQE Y  +    Y      L+ + +  P +FENV ++W  E+R
Sbjct: 43  NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 102
Query: 70  DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
            H   N  I+++G K DL            K L  +      + A+  G + ++E SAL 
Sbjct: 103 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 160
Query: 117 AINVEKAFQTILSEIYRII 135
               ++  +T+  E  R +
Sbjct: 161 ---TQRGLKTVFDEAIRAV 176

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELR 69
           D +V+G+ ++  +WDTAGQE Y       Y      L+ + +  P + EN+  +W  E++
Sbjct: 45  DIEVDGKQVELALWDTAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 104
Query: 70  DHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAE 103
            H   N+ I+++GNK DL++    A E A+   E
Sbjct: 105 -HFCPNVPIILVGNKKDLRNDEHTARELAKMKQE 137

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 15/129 (11%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELR 69
           D +V+GR ++  +WDTAGQE Y  +    Y  +   L+ + +  P + ENV  +W+ E+ 
Sbjct: 50  DVEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVL 109
Query: 70  DHADSNIVIMMIGNKTDLKH-------LR-----AVATEDAQSYAEREGLS-FIETSALE 116
            H    + I+++G K DL++       LR      V +++ QS A++ G + + E SA  
Sbjct: 110 -HFCQGVPIILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKT 168
Query: 117 AINVEKAFQ 125
              V + F+
Sbjct: 169 GYGVREVFE 177

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 19/139 (13%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
           +  V+G+ +   +WDTAGQE Y  +    Y      L+ + +  P +FENV ++W  E+R
Sbjct: 53  NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 112
Query: 70  DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
            H   N  I+++G K DL            K L  +      + A+  G + ++E SAL 
Sbjct: 113 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 170
Query: 117 AINVEKAFQTILSEIYRII 135
               ++  +T+  E  R +
Sbjct: 171 ---TQRGLKTVFDEAIRAV 186

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++   +  +I DTAGQE        + R   G +LVYD+T   +FE V   LK + D   
Sbjct: 71  IDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLP-LKNILDEIK 128
Query: 74  S--NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAI-NVEKAFQTILSE 130
              N+ ++++GNK DL H R V+TE+ +  A     +F E SA     N+ + F  +  E
Sbjct: 129 KPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCRE 188
Query: 131 IYR 133
           + R
Sbjct: 189 VRR 191

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 19/139 (13%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
           +  V+G+ +   +WDTAG E Y  +    Y      L+ + +  P +FENV ++W  E+R
Sbjct: 43  NVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 102
Query: 70  DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
            H   N  I+++G K DL            K L  +      + A+  G + ++E SAL 
Sbjct: 103 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 160
Query: 117 AINVEKAFQTILSEIYRII 135
               ++  +T+  E  R +
Sbjct: 161 ---TQRGLKTVFDEAIRAV 176

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 19/139 (13%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
           +  V+G+ +   +WDTAG E Y  +    Y      L+ + +  P +FENV ++W  E+R
Sbjct: 43  NVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 102
Query: 70  DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
            H   N  I+++G K DL            K L  +      + A+  G + ++E SAL 
Sbjct: 103 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 160
Query: 117 AINVEKAFQTILSEIYRII 135
               ++  +T+  E  R +
Sbjct: 161 ---TQRGLKTVFDEAIRAV 176

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 19/139 (13%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
           +  V+G+ +   +WDTAGQE Y  +    Y      L+ + +  P +FENV ++W  E+R
Sbjct: 44  NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 103
Query: 70  DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
            H   +  I+++G K DL            K L  +      + A   G + ++E SAL 
Sbjct: 104 HHC-PHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSAL- 161
Query: 117 AINVEKAFQTILSEIYRII 135
               ++  +T+  E  R +
Sbjct: 162 ---TQRGLKTVFDEAIRAV 177

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 19/139 (13%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
           +  V+G+ +   +WDTAGQE Y  +    Y      L+ + +  P +FENV ++W  E+R
Sbjct: 44  NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 103
Query: 70  DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
            H   +  I+++G K DL            K L  +      + A   G + ++E SAL 
Sbjct: 104 HHC-PHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSAL- 161
Query: 117 AINVEKAFQTILSEIYRII 135
               ++  +T+  E  R +
Sbjct: 162 ---TQRGLKTVFDEAIRAV 177

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 19/139 (13%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
           +  V+G+ +   +WDTAGQE Y  +    Y      L+ + +  P +FENV ++W  E+R
Sbjct: 43  NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 102
Query: 70  DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
            H   +  I+++G K DL            K L  +      + A   G + ++E SAL 
Sbjct: 103 HHC-PHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSAL- 160
Query: 117 AINVEKAFQTILSEIYRII 135
               ++  +T+  E  R +
Sbjct: 161 ---TQRGLKTVFDEAIRAV 176

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 19/139 (13%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
           +  V+G+ +   +WDTAG E Y  +    Y      L+ + +  P +FENV ++W  E+R
Sbjct: 46  NVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 105
Query: 70  DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
            H   N  I+++G K DL            K L  +      + A+  G + ++E SAL 
Sbjct: 106 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 163
Query: 117 AINVEKAFQTILSEIYRII 135
               ++  +T+  E  R +
Sbjct: 164 ---TQRGLKTVFDEAIRAV 179

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 19/139 (13%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
           +  V+G+ +   +WDTAG E Y  +    Y      L+ + +  P +FENV ++W  E+R
Sbjct: 70  NVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 129
Query: 70  DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
            H   N  I+++G K DL            K L  +      + A+  G + ++E SAL 
Sbjct: 130 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 187
Query: 117 AINVEKAFQTILSEIYRII 135
               ++  +T+  E  R +
Sbjct: 188 ---TQRGLKTVFDEAIRAV 203

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 19/139 (13%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
           +  V+ + +   +WDTAGQE Y  +    Y      L+ + +  P ++ENV ++W  E+R
Sbjct: 43  NVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVR 102
Query: 70  DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYA-EREGLSFIETSALE 116
            H  S  +I ++G K DL            K L  +      + A E + + ++E SAL 
Sbjct: 103 HHCPSTPII-LVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSAL- 160
Query: 117 AINVEKAFQTILSEIYRII 135
               ++  +T+  E  R +
Sbjct: 161 ---TQRGLKTVFDEAIRAV 176

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 19/139 (13%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
           +  V+ + +   +WDTAGQE Y  +    Y      L+ + +  P ++ENV ++W  E+R
Sbjct: 49  NVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVR 108
Query: 70  DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYA-EREGLSFIETSALE 116
            H  S  +I ++G K DL            K L  +      + A E + + ++E SAL 
Sbjct: 109 HHCPSTPII-LVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSAL- 166
Query: 117 AINVEKAFQTILSEIYRII 135
               ++  +T+  E  R +
Sbjct: 167 ---TQRGLKTVFDEAIRAV 182

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 5/121 (4%)
Query: 18  TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRW---LKELRDHADS 74
           +++  + DTAG + Y+   S Y+ G   A+LV+DV+   +FE+   W   LK  R   + 
Sbjct: 72  SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRER 131
Query: 75  NIVIMMIGNKTDLKHLR-AVATEDAQSYAEREGLSFIETSA-LEAINVEKAFQTILSEIY 132
            +  +++ NKTDL   R  V  + AQ +A    L F + SA     + +  F +I +  Y
Sbjct: 132 PLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFY 191
Query: 133 R 133
           R
Sbjct: 192 R 192

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 19/139 (13%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
           +  V+ + +   +WDTAGQE Y  +    Y      L+ + +  P ++ENV ++W  E+R
Sbjct: 50  NVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVR 109
Query: 70  DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYA-EREGLSFIETSALE 116
            H  S  +I ++G K DL            K L  +      + A E + + ++E SAL 
Sbjct: 110 HHCPSTPII-LVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSAL- 167
Query: 117 AINVEKAFQTILSEIYRII 135
               ++  +T+  E  R +
Sbjct: 168 ---TQRGLKTVFDEAIRAV 183

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 38/158 (24%)
Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGA-------------------LLVYD 51
           +  V+G+ +   +WDTAGQE Y  +    Y   +G                    L+ + 
Sbjct: 45  NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFS 104
Query: 52  VTKPTTFENV-SRWLKELRDHADSNIVIMMIGNKTDL------------KHLRAVATEDA 98
           +  P +FENV ++W  E+R H   N  I+++G K DL            K L  +     
Sbjct: 105 LVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 163
Query: 99  QSYAEREG-LSFIETSALEAINVEKAFQTILSEIYRII 135
            + A+  G + ++E SAL     ++  +T+  E  R +
Sbjct: 164 LAMAKEIGAVKYLECSAL----TQRGLKTVFDEAIRAV 197

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 19/131 (14%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHA 72
           V G+     ++DTAGQE Y  +    Y      L+ + V  P +F+NV   W+ EL+++A
Sbjct: 61  VGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA 120
Query: 73  DSNIVIMMIGNKTDLKH------------LRAVATEDAQSYAEREG-LSFIETSALEAIN 119
             N+  ++IG + DL+              + +  E  Q  A+  G   ++E SAL    
Sbjct: 121 -PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSAL---- 175
Query: 120 VEKAFQTILSE 130
            +K  +T+  E
Sbjct: 176 TQKGLKTVFDE 186

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 63/115 (54%), Gaps = 9/115 (7%)
Query: 22  QIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-----DSNI 76
           +I DTAG E++ ++   Y +   G +LVY +    +F+++    K +RD          +
Sbjct: 54  EILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDI----KPMRDQIIRVKRYEKV 109
Query: 77  VIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
            ++++GNK DL+  R V++ + ++ AE  G  F+ETSA     V++ F  I+ ++
Sbjct: 110 PVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 66/130 (50%), Gaps = 14/130 (10%)
Query: 22  QIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMM 80
            +WDTAGQE Y  +    Y  +   LL + V   T+F+N+S +W  E++ + D+   + +
Sbjct: 74  HLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-L 132
Query: 81  IGNKTDLKHLRA--VATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEIYRIISK 137
           +G K DL+   +  V  ++     ++ G +++IE S++  I + + F+  +  I+     
Sbjct: 133 VGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF----- 187
Query: 138 KSLSSGEPAP 147
               S +P P
Sbjct: 188 ----SNKPVP 193

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 19/136 (13%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHA 72
           V+G+ +   +WDTAG E Y  +    Y      L+ + +  P +F +V ++W  E+R H 
Sbjct: 198 VDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC 257
Query: 73  DSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALEAIN 119
             N  I+++G K DL            K L  +      + A+  G + ++E SAL    
Sbjct: 258 -PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL---- 312
Query: 120 VEKAFQTILSEIYRII 135
            ++  +T+  E  R +
Sbjct: 313 TQRGLKTVFDEAIRAV 328

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 19/136 (13%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHA 72
           V+G+ +   +WDTAG E Y  +    Y      L+ + +  P +F +V ++W  E+R H 
Sbjct: 198 VDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC 257
Query: 73  DSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALEAIN 119
             N  I+++G K DL            K L  +      + A+  G + ++E SAL    
Sbjct: 258 -PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL---- 312
Query: 120 VEKAFQTILSEIYRII 135
            ++  +T+  E  R +
Sbjct: 313 TQRGLKTVFDEAIRAV 328

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 19/136 (13%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHA 72
           V+G+ +   +WDTAG E Y  +    Y      L+ + +  P +F +V ++W  E+R H 
Sbjct: 198 VDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC 257
Query: 73  DSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALEAIN 119
             N  I+++G K DL            K L  +      + A+  G + ++E SAL    
Sbjct: 258 -PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL---- 312
Query: 120 VEKAFQTILSEIYRII 135
            ++  +T+  E  R +
Sbjct: 313 TQRGLKTVFDEAIRAV 328

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 62/115 (53%), Gaps = 5/115 (4%)
Query: 22  QIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMM 80
            +WDTAGQE Y  +    Y  +   LL + V   T+F+N+S +W  E++ + D+   + +
Sbjct: 73  HLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-L 131
Query: 81  IGNKTDLKHLRA--VATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEIY 132
           +G K DL+   +  V  ++     ++ G +++IE S++  I + + F+  +  I+
Sbjct: 132 VGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 186

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFEN-VSRWLKELRD 70
            + E + ++  +WDT+G   Y  +    Y  +   LL +D+++P T ++ + +W  E+ D
Sbjct: 52  LETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILD 111
Query: 71  HADSNIVIMMIGNKTDLK 88
           +  S  V ++IG KTDL+
Sbjct: 112 YCPSTRV-LLIGCKTDLR 128

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFEN-VSRWLKELRD 70
            + E + ++  +WDT+G   Y  +    Y  +   LL +D+++P T ++ + +W  E+ D
Sbjct: 51  LETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILD 110
Query: 71  HADSNIVIMMIGNKTDLK 88
           +  S  V ++IG KTDL+
Sbjct: 111 YCPSTRV-LLIGCKTDLR 127

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFEN-VSRWLKELRD 70
            + E + ++  +WDT+G   Y  +    Y  +   LL +D+++P T ++ + +W  E+ D
Sbjct: 68  LETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILD 127
Query: 71  HADSNIVIMMIGNKTDLK 88
           +  S  V ++IG KTDL+
Sbjct: 128 YCPSTRV-LLIGCKTDLR 144

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 22  QIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS--NIVIM 79
           QI DT G  ++ A+           +LV+ VT   + E +    K +     S  +I +M
Sbjct: 59  QITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVM 118
Query: 80  MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILS 129
           ++GNK D    R V T +AQ+ A+    +F+ETSA    NV++ FQ +L+
Sbjct: 119 LVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLT 167

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 15/122 (12%)
Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRD 70
           F+++ + I+  +WDT+G   Y  +    Y  +   L+ +D+++P T ++V  +W  E+++
Sbjct: 64  FEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE 123
Query: 71  HADSNIVIMMIGNKTDLK-----------HLRAVATEDAQSYAERE--GLSFIETSALEA 117
               N  ++++G K+DL+           H +   + D  +   ++    ++IE SAL++
Sbjct: 124 FC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQS 182
Query: 118 IN 119
            N
Sbjct: 183 EN 184

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 15/122 (12%)
Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRD 70
           F+++ + I+  +WDT+G   Y  +    Y  +   L+ +D+++P T ++V  +W  E+++
Sbjct: 69  FEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE 128
Query: 71  HADSNIVIMMIGNKTDLK-----------HLRAVATEDAQSYAERE--GLSFIETSALEA 117
               N  ++++G K+DL+           H +   + D  +   ++    ++IE SAL++
Sbjct: 129 FC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQS 187
Query: 118 IN 119
            N
Sbjct: 188 EN 189

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 15/122 (12%)
Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRD 70
           F+++ + I+  +WDT+G   Y  +    Y  +   L+ +D+++P T ++V  +W  E+++
Sbjct: 48  FEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE 107
Query: 71  HADSNIVIMMIGNKTDLK-----------HLRAVATEDAQSYAERE--GLSFIETSALEA 117
               N  ++++G K+DL+           H +   + D  +   ++    ++IE SAL++
Sbjct: 108 FC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQS 166
Query: 118 IN 119
            N
Sbjct: 167 EN 168

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 22  QIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFEN---VSRWLKELRDHADSNIVI 78
           QI DT G  ++ A+           +LVY +T   + E    +   + E++   +S I I
Sbjct: 54  QITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVES-IPI 112
Query: 79  MMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILS 129
           M++GNK D    R V + +A++ A     +F+ETSA    NV++ FQ +L+
Sbjct: 113 MLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLN 163

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           V+G      ++D   Q+  R +           ++VY VT   +FE  S    +LR    
Sbjct: 49  VDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ 108
Query: 74  SNIV-IMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           ++ V I+++GNK+DL   R V+ ++ ++ A      FIETSA    NV+  F+ ++ +I
Sbjct: 109 TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 47  LLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAERE 105
           L+VY +T   +FE  S    +LR    + +I I+++GNK+DL   R V+  + ++ A   
Sbjct: 85  LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVF 144
Query: 106 GLSFIETSALEAINVEKAFQTILSEI 131
              FIETSA    NV++ F+ I+ ++
Sbjct: 145 DCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           V+G      ++D   Q+  R +           ++VY VT   +FE  S    +LR    
Sbjct: 44  VDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ 103
Query: 74  SNIV-IMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           ++ V I+++GNK+DL   R V+ ++ ++ A      FIETSA    NV+  F+ ++ +I
Sbjct: 104 TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           V+G      ++D   Q+  R +           ++VY VT   +FE  S    +LR    
Sbjct: 49  VDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ 108
Query: 74  SNIV-IMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           ++ V I+++GNK+DL   R V+ ++ ++ A      FIETSA    NV+  F+ ++ +I
Sbjct: 109 TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 47  LLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAERE 105
           L+VY +T   +FE  S    +LR    + +I I+++GNK+DL   R V+  + ++ A   
Sbjct: 116 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVF 175
Query: 106 GLSFIETSALEAINVEKAFQTILSEI 131
              FIETSA    NV++ F+ I+ ++
Sbjct: 176 DCKFIETSAAVQHNVKELFEGIVRQV 201

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 23  IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
           ++DTAGQE Y  +    Y      L+ + V  P++FENV  +W+ E+  H       +++
Sbjct: 55  LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 113
Query: 82  GNKTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF-QTI 127
           G + DL+              + +  E A+  A + + + ++E SAL    ++  F + I
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
Query: 128 LSEIYRIISKKS 139
           L+ +     KKS
Sbjct: 174 LAALEPPEPKKS 185

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 23  IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
           ++DTAGQE Y  +    Y      L+ + V  P++FENV  +W+ E+  H       +++
Sbjct: 55  LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 113
Query: 82  GNKTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF-QTI 127
           G + DL+              + +  E A+  A + + + ++E SAL    ++  F + I
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
Query: 128 LSEIYRIISKKS 139
           L+ +     KKS
Sbjct: 174 LAALEPPEPKKS 185

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 23  IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
           ++DTAGQE Y  +    Y      L+ + V  P++FENV  +W+ E+  H       +++
Sbjct: 62  LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 120
Query: 82  GNKTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF-QTI 127
           G + DL+              + +  E A+  A + + + ++E SAL    ++  F + I
Sbjct: 121 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180
Query: 128 LSEIYRIISKKS 139
           L+ +     KKS
Sbjct: 181 LAALEPPEPKKS 192

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 23  IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
           ++DTAGQE Y  +    Y      L+ + V  P++FENV  +W+ E+  H       +++
Sbjct: 57  LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 115
Query: 82  GNKTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF-QTI 127
           G + DL+              + +  E A+  A + + + ++E SAL    ++  F + I
Sbjct: 116 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 175
Query: 128 LSEIYRIISKKS 139
           L+ +     KKS
Sbjct: 176 LAALEPPEPKKS 187

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 23  IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
           ++DTAGQE Y  +    Y      L+ + V  P++FENV  +W+ E+  H       +++
Sbjct: 56  LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 114
Query: 82  GNKTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF-QTI 127
           G + DL+              + +  E A+  A + + + ++E SAL    ++  F + I
Sbjct: 115 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 174
Query: 128 LSEIYRIISKKS 139
           L+ +     KKS
Sbjct: 175 LAALEPPEPKKS 186

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 23  IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
           ++DTAGQE Y  +    Y      L+ + V  P++FENV  +W+ E+  H       +++
Sbjct: 58  LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 116
Query: 82  GNKTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF-QTI 127
           G + DL+              + +  E A+  A + + + ++E SAL    ++  F + I
Sbjct: 117 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176
Query: 128 LSEIYRIISKKS 139
           L+ +     KKS
Sbjct: 177 LAALEPPEPKKS 188

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 23  IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
           ++DTAGQE Y  +    Y      L+ + V  P++FENV  +W+ E+  H       +++
Sbjct: 55  LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 113
Query: 82  GNKTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF-QTI 127
           G + DL+              + +  E A+  A + + + ++E SAL    ++  F + I
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
Query: 128 LSEIYRIISKKS 139
           L+ +     KKS
Sbjct: 174 LAALEPPEPKKS 185

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 23  IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
           ++DTAGQE Y  +    Y      L+ + V  P++FENV  +W+ E+  H       +++
Sbjct: 62  LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 120
Query: 82  GNKTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF-QTI 127
           G + DL+              + +  E A+  A + + + ++E SAL    ++  F + I
Sbjct: 121 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180
Query: 128 LSEIYRIISKKS 139
           L+ +     KKS
Sbjct: 181 LAALEPPEPKKS 192

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 23  IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
           ++DTAGQE Y  +    Y      L+ + V  P++FENV  +W+ E+  H       +++
Sbjct: 58  LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 116
Query: 82  GNKTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF-QTI 127
           G + DL+              + +  E A+  A + + + ++E SAL    ++  F + I
Sbjct: 117 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176
Query: 128 LSEIYRIISKKS 139
           L+ +     KKS
Sbjct: 177 LAALEPPEPKKS 188

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 23  IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
           ++DTAGQE Y  +    Y      L+ + V  P++FENV  +W+ E+  H       +++
Sbjct: 55  LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 113
Query: 82  GNKTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF-QTI 127
           G + DL+              + +  E A+  A + + + ++E SAL    ++  F + I
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
Query: 128 LSEIYRIISKKS 139
           L+ +     KKS
Sbjct: 174 LAALEPPEPKKS 185

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 47  LLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAERE 105
           L+VY +T   +FE  S    +LR    + +I I+++GNK+DL   R V+  + ++ A   
Sbjct: 85  LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVF 144
Query: 106 GLSFIETSALEAINVEKAFQTILSEI 131
              FIETSA    NV++ F+ I+ ++
Sbjct: 145 DXKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 23  IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
           ++DTAGQE Y  +    Y      L+ + V  P++FENV  +W+ E+  H       +++
Sbjct: 55  LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 113
Query: 82  GNKTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF-QTI 127
           G + DL+              + +  E A+  A + + + ++E SAL    ++  F + I
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
Query: 128 LSEIYRIISKKS 139
           L+ +     KKS
Sbjct: 174 LAALEPPEPKKS 185

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 47  LLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAERE 105
           L+VY +T   +FE  S    +LR    + +I I+++GNK+DL   R V+  + ++ A   
Sbjct: 85  LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVF 144
Query: 106 GLSFIETSALEAINVEKAFQTILSEI 131
              FIETSA    NV++ F+ I+ ++
Sbjct: 145 DCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 41  RGALGALLVYDVTKPTTFENVSRWLKELR-DHADSNIVIMMIGNKTDLKHLRAVATEDAQ 99
           +G    ++VY +    +FE+ S    +LR  H   ++ I+++GNK DL   R V+ E+ +
Sbjct: 76  QGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGR 135
Query: 100 SYAEREGLSFIETSALEAINVEKAFQ 125
           + A      FIETSA    NV + F+
Sbjct: 136 ACAVVFDCKFIETSATLQHNVAELFE 161

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 23  IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
           ++DTAGQE Y  +    Y      L+ + V  P++FENV  +W+ E+  H       +++
Sbjct: 65  LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 123
Query: 82  GNKTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF 124
           G + DL+              + +  E A+  A + + + ++E SAL    ++  F
Sbjct: 124 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 179

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 23  IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
           ++DTAGQE Y  +    Y      L+ + V  P++FENV  +W+ E+  H       +++
Sbjct: 55  LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 113
Query: 82  GNKTDLKH------------LRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF 124
           G + DL+              + +  E A+  A + + + ++E SAL    ++  F
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 15/125 (12%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHA 72
           + G      ++DTAGQE Y  +    Y      L+ + V  P++FENV  +W+ E+  H 
Sbjct: 50  IGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 109
Query: 73  DSNIVIMMIGNKTDLKH------------LRAVATEDAQSYA-EREGLSFIETSALEAIN 119
                 +++G + DL+              + +  E A+  A + + + ++E SAL    
Sbjct: 110 -PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKG 168
Query: 120 VEKAF 124
           ++  F
Sbjct: 169 LKNVF 173

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 23  IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
           ++DTAGQE Y  +    Y      L+ + V  P++FENV  +W+ E+  H       +++
Sbjct: 57  LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 115
Query: 82  GNKTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF 124
           G + DL+              + +  E A+  A + + + ++E SAL    ++  F
Sbjct: 116 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 23  IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
           ++DTAGQE Y  +    Y      L+ + V  P++FENV  +W+ E+  H       +++
Sbjct: 55  LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 113
Query: 82  GNKTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF 124
           G + DL+              + +  E A+  A + + + ++E SAL    ++  F
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 23  IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
           ++DTAGQE Y  +    Y      L+ + V  P++FENV  +W+ E+  H       +++
Sbjct: 55  LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 113
Query: 82  GNKTDLKH------------LRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF 124
           G + DL+              + +  E A+  A + + + ++E SAL    ++  F
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 23  IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
           ++DTAGQE Y  +    Y      L+ + V  P++FENV  +W+ E+  H       +++
Sbjct: 55  LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 113
Query: 82  GNKTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF 124
           G + DL+              + +  E A+  A + + + ++E SAL    ++  F
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 23  IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
           ++DTAGQE Y  +    Y      L+ + V  P++FENV  +W+ E+  H       +++
Sbjct: 55  LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 113
Query: 82  GNKTDLKH------------LRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF 124
           G + DL+              + +  E A+  A + + + ++E SAL    ++  F
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 23  IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
           ++DTAGQE Y  +    Y      L+ + V  P++FENV  +W+ E+  H       +++
Sbjct: 55  LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 113
Query: 82  GNKTDLKH------------LRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF 124
           G + DL+              + +  E A+  A + + + ++E SAL    ++  F
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 16/132 (12%)
Query: 23  IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
           ++DTAG E Y  +    Y      L+ + V  P++FENV  +W+ E+  H       +++
Sbjct: 59  LFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 117
Query: 82  GNKTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF-QTI 127
           G + DL+              + +  E A+  A + + + ++E SAL    ++  F + I
Sbjct: 118 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 177
Query: 128 LSEIYRIISKKS 139
           L+ +     KKS
Sbjct: 178 LAALEPPEPKKS 189

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 15/114 (13%)
Query: 25  DTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMIGN 83
           DTAGQE Y  +    Y      L+ + V  P++FENV  +W+ E+  H       +++G 
Sbjct: 57  DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGT 115
Query: 84  KTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF 124
           + DL+              + +  E A+  A + + + ++E SAL    ++  F
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 15/116 (12%)
Query: 23  IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
           ++DTAG E Y  +    Y      L+ + V  P++FENV  +W+ E+  H       +++
Sbjct: 55  LFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 113
Query: 82  GNKTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF 124
           G + DL+              + +  E A+  A + + + ++E SAL    ++  F
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 12  FQVEG---RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE- 67
           F VE    + +K  +WD  GQ++ R +   YY G  G + V D       +   + L   
Sbjct: 356 FNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI 415
Query: 68  LRDHADSNIVIMMIGNKTDL 87
           + D    + +I++  NK DL
Sbjct: 416 INDREMRDAIILIFANKQDL 435

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 47  LLVYDVTKPTTFENVSRWLKELR-DHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAERE 105
           L+V+ VT   +F  V   L  LR      ++ ++++GNK+DL   R V+ E+ +  A   
Sbjct: 101 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL 160
Query: 106 GLSFIETSALEAINVEKAFQTILSEI 131
               IETSA    N  + F+  + +I
Sbjct: 161 SCKHIETSAALHHNTRELFEGAVRQI 186

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 47  LLVYDVTKPTTFENVSRWLKELR-DHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAERE 105
           L+V+ VT   +F  V   L  LR      ++ ++++GNK+DL   R V+ E+ +  A   
Sbjct: 90  LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL 149
Query: 106 GLSFIETSALEAINVEKAFQTILSEI 131
               IETSA    N  + F+  + +I
Sbjct: 150 SCKHIETSAALHHNTRELFEGAVRQI 175

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 47  LLVYDVTKPTTFENVSRWLKELR-DHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAERE 105
           L+V+ VT   +F  V   L  LR      ++ ++++GNK+DL   R V+ E+ +  A   
Sbjct: 80  LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL 139
Query: 106 GLSFIETSALEAINVEKAFQTILSEI 131
               IETSA    N  + F+  + +I
Sbjct: 140 SCKHIETSAALHHNTRELFEGAVRQI 165

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 12  FQVEG---RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE- 67
           F VE    + +K  +WD  GQ++ R +   YY G  G + V D       +   + L   
Sbjct: 34  FNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI 93
Query: 68  LRDHADSNIVIMMIGNKTDL 87
           + D    + +I++  NK DL
Sbjct: 94  INDREXRDAIILIFANKQDL 113

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLK------E 67
           VE + I   +WD  GQ+R R +   Y++   G + V D       + V+  L+      E
Sbjct: 56  VEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDE 115
Query: 68  LRDHADSNIVIMMIGNKTDLKHLRAVA 94
           LRD      V+++  NK DL +  A++
Sbjct: 116 LRDA-----VLLLFANKQDLPNAMAIS 137

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 18  TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNI 76
            +  +IWD  GQ R+R++   Y RG    + + D       E     L  L D      I
Sbjct: 66  NVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGI 125
Query: 77  VIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIE 111
            ++++GNK DL +       D +   E+  LS I+
Sbjct: 126 PVLVLGNKRDLPN-----ALDEKQLIEKMNLSAIQ 155

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 12  FQVEGRT---IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE- 67
           F VE  T   +K  +WD  GQ++ R +   YY G  G + V D       +   + L   
Sbjct: 46  FNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI 105
Query: 68  LRDHADSNIVIMMIGNKTDL 87
           + D    + +I++  NK DL
Sbjct: 106 INDREMRDAIILIFANKQDL 125

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 39.7 bits (91), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 12  FQVEG---RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE- 67
           F VE    + +K  +WD  GQ++ R +   YY G  G + V D       +   + L   
Sbjct: 47  FNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI 106
Query: 68  LRDHADSNIVIMMIGNKTDL 87
           + D    + +I++  NK DL
Sbjct: 107 INDREMRDAIILIFANKQDL 126

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	174
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	7e-84
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-83
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	2e-83
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	8e-82
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-81
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	2e-81
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	2e-81
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	3e-81
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	3e-81
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	8e-81
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	2e-80
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	2e-80
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	3e-80
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	1e-79
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	2e-79
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	3e-79
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	4e-79
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	6e-79
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	2e-78
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	3e-78
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	4e-78
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	3e-77
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	4e-77
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	4e-77
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	6e-77
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-76
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-76
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	1e-76
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	2e-76
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	2e-76
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	4e-76
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	5e-76
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-75
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	1e-75
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	3e-75
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-74
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	5e-74
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	1e-73
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	3e-71
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	3e-71
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	1e-69
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	1e-68
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	1e-67
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	9e-60
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	2e-59
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	1e-58
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	6e-58
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	7e-58
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	8e-58
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	9e-58
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	2e-56
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	3e-56
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	3e-55
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	5e-55
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	1e-53
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	7e-53
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	4e-52
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	4e-52
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	7e-52
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	9e-52
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	5e-51
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	2e-50
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	4e-50
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	5e-50
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	5e-50
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	1e-47
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	2e-47
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	3e-46
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	4e-44
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	2e-42
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	4e-32
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	1e-31
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	2e-29
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	3e-29
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	3e-29
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	1e-28
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	1e-28
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	2e-27
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	1e-26
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	2e-26
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	2e-26
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	2e-26
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	3e-25
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	6e-24
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	4e-21
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	2e-17
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	5e-08
3llu_A	196	RAS-related GTP-binding protein C; structural geno	6e-08
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	3e-07
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	3e-07
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	3e-07
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	4e-07
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	4e-07
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	5e-07
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	5e-07
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	5e-07
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	9e-07
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	2e-06
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	1e-05
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	3e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	8e-05
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	1e-04
1nrj_B	218	SR-beta, signal recognition particle receptor beta	8e-04

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  244 bits (626), Expect = 7e-84
 Identities = 65/159 (40%), Positives = 102/159 (64%), Gaps = 3/159 (1%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           +++G+T+K QIWDTAGQER+R ITS+YYRG+ G ++VYDVT   +F  V  WL+E+  +A
Sbjct: 51  ELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA 110

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
            S ++ +++GNK DLK  R V  + A+ +A+   + F+ETSAL++ NVE AF T+  +I 
Sbjct: 111 TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIK 170

Query: 133 RIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 171
             +S+++L+       +      + + G S  NT   CC
Sbjct: 171 ESMSQQNLNETTQKKED---KGNVNLKGQSLTNTGGCCC 206

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  244 bits (626), Expect = 1e-83
 Identities = 82/168 (48%), Positives = 119/168 (70%), Gaps = 9/168 (5%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           ++EG+ IKAQIWDTAGQERYRAITSAYYRGA+GAL+VYD++K +++EN + WL ELR++A
Sbjct: 56  EIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENA 115

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
           D N+ + +IGNK+DL HLRAV TE+++++A+   L F ETSAL + NV+KAF+ +++ IY
Sbjct: 116 DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIY 175

Query: 133 RIISKKSL------SSGEPAPSNIKEGQTIVVGGASEANTKKP---CC 171
           + +SK  +      ++G    ++   G TI +      N K     CC
Sbjct: 176 QKVSKHQMDLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  243 bits (623), Expect = 2e-83
 Identities = 95/153 (62%), Positives = 122/153 (79%), Gaps = 1/153 (0%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           QV+G+TIKAQIWDTAGQERYR ITSAYYRGA+GALLVYD+ K  T+ENV RWLKELRDHA
Sbjct: 48  QVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 107

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
           DSNIVIM++GNK+DL+HLRAV T++A+++AE+  LSFIETSAL++ NVE+AF+ IL+EIY
Sbjct: 108 DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIY 167

Query: 133 RIISKKSLSSGEPAPSNIKEGQTIVVGGASEAN 165
           RI+S+K ++    A         + +      +
Sbjct: 168 RIVSQKQIAD-RAAHDESPGNNVVDISVPPTTD 199

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  239 bits (611), Expect = 8e-82
 Identities = 61/132 (46%), Positives = 80/132 (60%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
            V G+ +K QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+  ++ WL + R  A
Sbjct: 53  NVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA 112

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
             NIVI++ GNK DL   R V   +A  +A+   L F+ETSAL   NVE+AF     +I 
Sbjct: 113 SQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKIL 172

Query: 133 RIISKKSLSSGE 144
             I    L    
Sbjct: 173 NKIESGELDPER 184

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  239 bits (612), Expect = 1e-81
 Identities = 54/149 (36%), Positives = 90/149 (60%), Gaps = 1/149 (0%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
               + IK QIWDTAG ERYR IT+AYYRGA+G +L+YD+T   +F  V  W  +++ ++
Sbjct: 51  YRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS 110

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
             N  ++++GNK D++  R V++E  +  A+  G  F E SA + INV++ F+ ++  I 
Sbjct: 111 WDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVIC 170

Query: 133 RIISKKSLSSGEPAPSNIKEGQTIVVGGA 161
             +S+   ++ +PA +  K+G  +    A
Sbjct: 171 EKMSESLDTA-DPAVTGAKQGPQLTDQQA 198

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  238 bits (609), Expect = 2e-81
 Identities = 76/126 (60%), Positives = 99/126 (78%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
            +    +KAQIWDTAG ERYRAITSAYYRGA+GALLV+D+TK  T+  V RWLKEL DHA
Sbjct: 68  MLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA 127

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
           ++ IV+M++GNK+DL   R V TE+A+ +AE  GL F+ETSAL++ NVE AF+T+L EI+
Sbjct: 128 EATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 187

Query: 133 RIISKK 138
             +SK+
Sbjct: 188 AKVSKQ 193

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  237 bits (608), Expect = 2e-81
 Identities = 56/127 (44%), Positives = 82/127 (64%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
            V   T+K +IWDTAGQERY ++   YYRGA  A++V+DVT   +FE   +W++EL+   
Sbjct: 55  AVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQG 114

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
           + N+V+ + GNK+DL   R V  EDAQ+YA+  GL F+ETSA  A NV++ F  I   + 
Sbjct: 115 NPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLP 174

Query: 133 RIISKKS 139
           R+   ++
Sbjct: 175 RVQPTEN 181

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  238 bits (609), Expect = 3e-81
 Identities = 63/139 (45%), Positives = 95/139 (68%), Gaps = 1/139 (0%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           +++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +A
Sbjct: 59  ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA 118

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
             N+  +++GNK DL   + V    A+ +A+  G+ F+ETSA  A NVE++F T+ +EI 
Sbjct: 119 SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 178

Query: 133 RIISKKSLSSGEPAPSNIK 151
           + +   + + G    SN+K
Sbjct: 179 KRMGPGATAGGAE-KSNVK 196

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  238 bits (609), Expect = 3e-81
 Identities = 61/130 (46%), Positives = 81/130 (62%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
            V G+T+K QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+ +++ WL + R  A
Sbjct: 68  NVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLA 127

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
             NIV+++ GNK DL   R V   +A  +A+   L F+ETSAL   NVE+AF      I 
Sbjct: 128 SPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTIL 187

Query: 133 RIISKKSLSS 142
             I    L  
Sbjct: 188 NKIDSGELDP 197

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  236 bits (605), Expect = 8e-81
 Identities = 67/128 (52%), Positives = 92/128 (71%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
            ++G+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD+T+  TF +++ WL++ R H+
Sbjct: 64  NIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS 123

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
            SN+VIM+IGNK+DL+  R V  E+ +++A   GL F+ETSA  A NVE+AF     EIY
Sbjct: 124 SSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIY 183

Query: 133 RIISKKSL 140
           R I +   
Sbjct: 184 RKIQQGLF 191

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  236 bits (603), Expect = 2e-80
 Identities = 48/132 (36%), Positives = 82/132 (62%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           ++ G  +K QIWDTAGQER+R+IT +YYR A   +L YD+T   +F  +  WL+E+  +A
Sbjct: 69  EINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA 128

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
            + ++ +++GNK DL   R V+ + A+ ++E + + ++ETSA E+ NVEK F  +   + 
Sbjct: 129 SNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLI 188

Query: 133 RIISKKSLSSGE 144
               + +L +  
Sbjct: 189 SEARQNTLVNNV 200

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  236 bits (603), Expect = 2e-80
 Identities = 49/159 (30%), Positives = 89/159 (55%), Gaps = 8/159 (5%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
            +E RT++ Q+WDTAG ER+R++  +Y R +  A++VYD+T   +F+  ++W+ ++R   
Sbjct: 59  YLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTER 118

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
            S+++IM++GNKTDL   R V+ E+ +  A+   + FIETSA    NV++ F+ + + + 
Sbjct: 119 GSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 178

Query: 133 RIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 171
            + S +  S  +           I +    E    +  C
Sbjct: 179 GMESTQDRSREDM--------IDIKLEKPQEQPVSEGGC 209

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  235 bits (601), Expect = 3e-80
 Identities = 93/120 (77%), Positives = 111/120 (92%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           QV+G+TIKAQIWDTAG ERYRAITSAYYRGA+GALLVYD+ K  T+ENV RWLKELRDHA
Sbjct: 72  QVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 131

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
           DSNIVIM++GNK+DL+HLRAV T++A+++AE+ GLSFIETSAL++ NVE AFQTIL+EIY
Sbjct: 132 DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  233 bits (596), Expect = 1e-79
 Identities = 59/138 (42%), Positives = 90/138 (65%), Gaps = 5/138 (3%)

Query: 11  DF-----QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWL 65
           DF     +++G+ IK QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W+
Sbjct: 44  DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWI 103

Query: 66  KELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQ 125
           + + +HA +++  M++GNK D+   R V+ E  +  A   G+ F+ETSA   INVE AF 
Sbjct: 104 RNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFF 163

Query: 126 TILSEIYRIISKKSLSSG 143
           T+  +I   + K   ++ 
Sbjct: 164 TLARDIKAKMDKNWKATA 181

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  232 bits (595), Expect = 2e-79
 Identities = 62/121 (51%), Positives = 86/121 (71%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           +V G+ IK QIWDTAGQER+RA+T +YYRGA GAL+VYD+T+ +T+ ++S WL + R+  
Sbjct: 58  EVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT 117

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
           + N VI++IGNK DL+  R V  E+A+ +AE  GL F+E SA    NVE AF     +IY
Sbjct: 118 NPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177

Query: 133 R 133
           +
Sbjct: 178 Q 178

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  232 bits (594), Expect = 3e-79
 Identities = 54/127 (42%), Positives = 79/127 (62%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
                  K  IWDTAGQER+ ++   YYRG+  A++VYD+TK  +F  + +W+KEL++H 
Sbjct: 66  PCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG 125

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
             NIV+ + GNK DL  +R V  +DA+ YAE  G   +ETSA  AIN+E+ FQ I  +I 
Sbjct: 126 PENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIP 185

Query: 133 RIISKKS 139
            +   ++
Sbjct: 186 PLDPHEN 192

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  231 bits (592), Expect = 4e-79
 Identities = 53/121 (43%), Positives = 72/121 (59%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           Q +    K  IWDTAG ER+RA+   YYRG+  A++VYD+TK  TF  +  W++ELR H 
Sbjct: 49  QYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHG 108

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
             +IV+ + GNK DL  +R V   DA+ YA+     F+ETSA  AIN+ + F  I   I 
Sbjct: 109 PPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 168

Query: 133 R 133
            
Sbjct: 169 S 169

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  231 bits (591), Expect = 6e-79
 Identities = 55/121 (45%), Positives = 79/121 (65%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
            ++  T+K +IWDTAGQERY ++   YYRGA  A++VYD+T   +F     W+KEL+  A
Sbjct: 49  CLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA 108

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
             NIVI + GNK DL + RAV  ++AQSYA+   L F+ETSA  ++NV + F  I  ++ 
Sbjct: 109 SPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

Query: 133 R 133
           +
Sbjct: 169 K 169

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  230 bits (588), Expect = 2e-78
 Identities = 59/133 (44%), Positives = 83/133 (62%), Gaps = 5/133 (3%)

Query: 11  DF-----QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWL 65
           DF      V+G  +K Q+WDTAGQER+R++T AYYR A   LL+YDVT   +F+N+  WL
Sbjct: 47  DFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWL 106

Query: 66  KELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQ 125
            E+ ++A  ++ +M++GNK D  H R V  ED +  A+  GL F+ETSA   +NV+ AF 
Sbjct: 107 TEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFT 166

Query: 126 TILSEIYRIISKK 138
            I  E+ R   K 
Sbjct: 167 AIAKELKRRSMKA 179

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  230 bits (588), Expect = 3e-78
 Identities = 52/125 (41%), Positives = 78/125 (62%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
               + IK QIWDTAGQERYR IT+AYYRGA+G LL+YD+    +F  V  W  +++ ++
Sbjct: 65  YRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS 124

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
             N  ++++GNK DL+  R V  ED +  A+  G  F E SA E INV++ F+ ++  I 
Sbjct: 125 WDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVIC 184

Query: 133 RIISK 137
             +++
Sbjct: 185 EKMNE 189

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  228 bits (585), Expect = 4e-78
 Identities = 47/120 (39%), Positives = 72/120 (60%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
            + G+ +   IWDTAGQER+ A+   YYR + GA+LVYD+T   +F+ V  W+KELR   
Sbjct: 49  NIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML 108

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
            + I + ++GNK DL+  R V+ ++A+SYAE  G     TSA +   +E+ F  +   + 
Sbjct: 109 GNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  228 bits (584), Expect = 3e-77
 Identities = 39/139 (28%), Positives = 67/139 (48%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
             +G  IK  +WDTAGQE+   +   YY GA GA+L +DVT   T +N++RW+KE +   
Sbjct: 55  DDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVV 114

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
            +   I++  NK D+K+ + ++ +      + +   + E SA  A N    F  +     
Sbjct: 115 GNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFT 174

Query: 133 RIISKKSLSSGEPAPSNIK 151
                  +S+    P+ + 
Sbjct: 175 GRPDLIFVSNVNLEPTEVN 193

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  227 bits (580), Expect = 4e-77
 Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 9/137 (6%)

Query: 11  DF-----QVEGR-TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRW 64
           DF      + G   +  QIWD  GQ     +   Y  GA G LLVYD+T   +FEN+  W
Sbjct: 42  DFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDW 101

Query: 65  L---KELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVE 121
               K++ + +++  ++ ++GNK DL+H+R +  E    + +  G S    SA    +V 
Sbjct: 102 YTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVF 161

Query: 122 KAFQTILSEIYRIISKK 138
             FQ + +EI  I   K
Sbjct: 162 LCFQKVAAEILGIKLNK 178

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  227 bits (580), Expect = 4e-77
 Identities = 47/122 (38%), Positives = 81/122 (66%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
            +E RT++ Q+WDTAGQER+R++  +Y R +  A++VYD+T   +F   S+W+ ++R   
Sbjct: 57  YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER 116

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
            S+++IM++GNKTDL   R V+TE+ +  A+   + FIETSA    NV++ F+ + + + 
Sbjct: 117 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 176

Query: 133 RI 134
            +
Sbjct: 177 GM 178

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  227 bits (580), Expect = 6e-77
 Identities = 52/129 (40%), Positives = 83/129 (64%), Gaps = 1/129 (0%)

Query: 15  EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS 74
            G+ I  Q+WDTAG ER+R++T+A++R A+G LL++D+T   +F NV  W+ +L+ HA S
Sbjct: 66  RGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS 125

Query: 75  -NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133
            N  I++ GNK+DL+  RAV  E+A+  AE+ G+ + ETSA    N+  A + +L  I +
Sbjct: 126 ENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMK 185

Query: 134 IISKKSLSS 142
            + +    S
Sbjct: 186 RMERSVDKS 194

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  226 bits (578), Expect = 1e-76
 Identities = 53/124 (42%), Positives = 79/124 (63%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
               + +K QIWDTAGQERYR IT+AYYRGA+G +L+YD+T   +F  V  W  +++ ++
Sbjct: 66  YRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS 125

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
             N  ++++GNK D++  R V TE  Q  AE+ G  F E SA E I+V +AF+ ++  I 
Sbjct: 126 WDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAIC 185

Query: 133 RIIS 136
             +S
Sbjct: 186 DKMS 189

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  226 bits (578), Expect = 1e-76
 Identities = 59/121 (48%), Positives = 87/121 (71%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           +++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +A
Sbjct: 76  ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA 135

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
             N+  +++GNK DL   + V    A+ +A+  G+ F+ETSA  A NVE++F T+ +EI 
Sbjct: 136 SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 195

Query: 133 R 133
           +
Sbjct: 196 K 196

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  227 bits (580), Expect = 1e-76
 Identities = 52/138 (37%), Positives = 83/138 (60%), Gaps = 1/138 (0%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
             +   +  Q+WDTAGQER+R++T+A++R A+G LL++D+T   +F NV  W+ +L+ +A
Sbjct: 78  SGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA 137

Query: 73  DS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
              N  I++IGNK DL   R V    A+  A++ G+ + ETSA    NVEKA +T+L  I
Sbjct: 138 YCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 197

Query: 132 YRIISKKSLSSGEPAPSN 149
            + + +    +  P   N
Sbjct: 198 MKRMEQCVEKTQIPDTVN 215

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  226 bits (578), Expect = 2e-76
 Identities = 54/137 (39%), Positives = 81/137 (59%), Gaps = 1/137 (0%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
            + G+ +K Q+WDTAGQER+R IT+AYYRGA+G +LVYDVT   TF N+ +W K + +HA
Sbjct: 63  DINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHA 122

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
           +    ++++GNK+D+   R V  +  ++ A+  G+ FIE+SA    NV + F T+   I 
Sbjct: 123 NDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQ 181

Query: 133 RIISKKSLSSGEPAPSN 149
             I    L         
Sbjct: 182 EKIDSNKLVGVGNGKEG 198

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  225 bits (576), Expect = 2e-76
 Identities = 58/137 (42%), Positives = 79/137 (57%), Gaps = 6/137 (4%)

Query: 11  DF-----QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWL 65
           DF     ++ G  +K QIWDTAGQER+R ITS YYRG  G ++VYDVT   +F NV RWL
Sbjct: 45  DFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWL 104

Query: 66  KELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQ 125
            E+  + D ++  +++GNK D    + V TEDA  +A + G+   ETSA E +NVE+ F 
Sbjct: 105 HEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFN 163

Query: 126 TILSEIYRIISKKSLSS 142
            I   + R         
Sbjct: 164 CITELVLRAKKDNLAKQ 180

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  225 bits (575), Expect = 4e-76
 Identities = 62/130 (47%), Positives = 90/130 (69%), Gaps = 1/130 (0%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           +++G+ +K QIWDTAGQER+R IT +YYR A GA+L YD+TK ++F +V  W++++R +A
Sbjct: 72  EIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA 131

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEI 131
            SNIV ++IGNK+DL  LR V+  +AQS AE    L  IETSA ++ NVE+AF  + +E+
Sbjct: 132 GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191

Query: 132 YRIISKKSLS 141
                    S
Sbjct: 192 IMRHGGPLFS 201

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  225 bits (575), Expect = 5e-76
 Identities = 57/171 (33%), Positives = 84/171 (49%), Gaps = 17/171 (9%)

Query: 11  DF-----QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWL 65
           DF      V+ R +  QIWDTAGQER++++  A+YRGA   +LV+DVT P TF+ +  W 
Sbjct: 44  DFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWR 103

Query: 66  KELRDHAD----SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVE 121
            E    A      N   +++GNK DL++ +            +  + + ETSA EAINVE
Sbjct: 104 DEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 163

Query: 122 KAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCCS 172
           +AFQTI     +  ++  L +  P        + I +     A      CS
Sbjct: 164 QAFQTIARNALKQETEVELYNEFP--------EPIKLDKNERAKASAESCS 206

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  222 bits (568), Expect = 1e-75
 Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 6/128 (4%)

Query: 11  DF-----QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWL 65
           DF     QV    ++  +WDTAGQE + AIT AYYRGA   +LV+  T   +FE +S W 
Sbjct: 41  DFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWR 100

Query: 66  KELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQ 125
           +++      +I   ++ NK DL     +  E+A+  A+R  L F  TS  E +NV + F+
Sbjct: 101 EKVVAEVG-DIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFK 159

Query: 126 TILSEIYR 133
            +  +  +
Sbjct: 160 YLAEKHLQ 167

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  222 bits (568), Expect = 1e-75
 Identities = 53/125 (42%), Positives = 80/125 (64%), Gaps = 1/125 (0%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
            + G+ +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   TF N+ +W K + +HA
Sbjct: 46  DINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA 105

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
           +    ++++GNK+D+   R V  +  ++ A+  G+ FIE+SA    NV + F T+   I 
Sbjct: 106 NDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQ 164

Query: 133 RIISK 137
             I  
Sbjct: 165 EKIDS 169

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  222 bits (568), Expect = 3e-75
 Identities = 47/122 (38%), Positives = 82/122 (67%), Gaps = 1/122 (0%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           ++ G+ I+ QIWDTAGQER+ +ITSAYYR A G +LVYD+TK  TF+++ +W+K +  +A
Sbjct: 69  ELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYA 128

Query: 73  DSNIVIMMIGNKTDLKHLRAVATEDAQSYAER-EGLSFIETSALEAINVEKAFQTILSEI 131
             +  ++++GNK D +  R +  +  + +A++  G+ F E SA +  NV++ F  ++ +I
Sbjct: 129 SEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188

Query: 132 YR 133
            +
Sbjct: 189 LK 190

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  221 bits (565), Expect = 1e-74
 Identities = 54/137 (39%), Positives = 75/137 (54%), Gaps = 2/137 (1%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
            V+G   K  IWDTAGQER+R +T +YYRGA G +LVYDVT+  TF  +  WL EL  + 
Sbjct: 58  SVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYC 117

Query: 73  DSN-IVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
             N IV M++GNK D    R V   +   +A +  + FIE SA     V+ AF+ ++ +I
Sbjct: 118 TRNDIVNMLVGNKIDK-ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 176

Query: 132 YRIISKKSLSSGEPAPS 148
            +        +    PS
Sbjct: 177 IQTPGLWESENQNSGPS 193

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  219 bits (561), Expect = 5e-74
 Identities = 48/134 (35%), Positives = 72/134 (53%), Gaps = 11/134 (8%)

Query: 11  DFQ-----VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWL 65
           DFQ     V+G     Q+WDTAGQER+R+I  +Y+R A G LL+YDVT   +F N+  W+
Sbjct: 64  DFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWV 123

Query: 66  KELRDHADSNIVIMMIGNKTDLKHL------RAVATEDAQSYAEREGLSFIETSALEAIN 119
             + D A   + IM++GNK D++        + V     +  A   G  F ETSA +  N
Sbjct: 124 DMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN 183

Query: 120 VEKAFQTILSEIYR 133
           + +A   +  E+ +
Sbjct: 184 IVEAVLHLAREVKK 197

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  219 bits (560), Expect = 1e-73
 Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 7/143 (4%)

Query: 13  QVEGRTIKAQIW--DTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRD 70
            +   T+  +++  DTAG + Y+   S Y+ G   A+LV+DV+   +FE+   W + L+ 
Sbjct: 65  TIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKS 124

Query: 71  ---HADSNIVIMMIGNKTDLKHLR-AVATEDAQSYAEREGLSFIETSA-LEAINVEKAFQ 125
                +  +  +++ NKTDL   R  V  + AQ +A    L F + SA     + +  F 
Sbjct: 125 ARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFL 184

Query: 126 TILSEIYRIISKKSLSSGEPAPS 148
           +I +  YR    K  +  +   +
Sbjct: 185 SIATTFYRNYEDKVAAFQDACRN 207

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  211 bits (541), Expect = 3e-71
 Identities = 48/133 (36%), Positives = 77/133 (57%), Gaps = 11/133 (8%)

Query: 11  DF-----QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWL 65
           +F     +V+G  +  QIWDTAGQER+R++ + +YRG+   LL + V    +F+N+S W 
Sbjct: 43  EFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWK 102

Query: 66  KELRDHAD----SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREG-LSFIETSALEAINV 120
           KE   +AD     +   +++GNK D+   R V+TE+AQ++    G   + ETSA +A NV
Sbjct: 103 KEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNV 161

Query: 121 EKAFQTILSEIYR 133
             AF+  +  +  
Sbjct: 162 AAAFEEAVRRVLA 174

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  212 bits (542), Expect = 3e-71
 Identities = 46/133 (34%), Positives = 74/133 (55%), Gaps = 10/133 (7%)

Query: 11  DF-----QVEGRTIKAQIWDTAGQERYR-AITSAYYRGALGALLVYDVTKPTTFENVSRW 64
           DF      ++G  IK Q+WDTAGQER+R ++   YYR     + VYD+T   +F ++  W
Sbjct: 56  DFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAW 115

Query: 65  LKELRDHADSN-IVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSAL---EAINV 120
           ++E + H  +N I  +++GNK DL+    V T+ AQ +A+   +   ETSA    +  +V
Sbjct: 116 IEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHV 175

Query: 121 EKAFQTILSEIYR 133
           E  F T+  ++  
Sbjct: 176 EAIFMTLAHKLKS 188

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  209 bits (533), Expect = 1e-69
 Identities = 39/140 (27%), Positives = 70/140 (50%), Gaps = 3/140 (2%)

Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
           F      IK  +WDTAGQE++  +   YY  A  A++++DVT   T++NV  W ++L   
Sbjct: 57  FHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 116

Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
            + NI I++ GNK D+K  +      +  +  ++ L + + SA    N EK F  +  ++
Sbjct: 117 CE-NIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173

Query: 132 YRIISKKSLSSGEPAPSNIK 151
               + + ++    AP  + 
Sbjct: 174 IGDPNLEFVAMPALAPPEVV 193

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  206 bits (526), Expect = 1e-68
 Identities = 46/134 (34%), Positives = 70/134 (52%), Gaps = 3/134 (2%)

Query: 2   GQPRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV 61
                 +  ++      IK  IWDTAGQERY +I   YYRGA  A++V+D++   T +  
Sbjct: 76  NVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRA 135

Query: 62  SRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVE 121
             W+ +L+    SN +I+++ NK D      V   + Q YA+   L FI+TSA    N++
Sbjct: 136 KTWVNQLK--ISSNYIIILVANKIDKNK-FQVDILEVQKYAQDNNLLFIQTSAKTGTNIK 192

Query: 122 KAFQTILSEIYRII 135
             F  +  EIY+ I
Sbjct: 193 NIFYMLAEEIYKNI 206

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  203 bits (518), Expect = 1e-67
 Identities = 50/135 (37%), Positives = 75/135 (55%), Gaps = 12/135 (8%)

Query: 11  DF-----QVEG-RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRW 64
           DF      V+G +    Q+WDTAGQER++++  A+YRGA   +LVYDVT  ++FEN+  W
Sbjct: 44  DFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSW 103

Query: 65  LKELRDHAD----SNIVIMMIGNKTDLKHL-RAVATEDAQSYAEREG-LSFIETSALEAI 118
             E   HA+         +++GNK D +   + V+ + AQ  A+  G +    TSA  AI
Sbjct: 104 RDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI 163

Query: 119 NVEKAFQTILSEIYR 133
           NV+ AF+ I     +
Sbjct: 164 NVDTAFEEIARSALQ 178

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  182 bits (465), Expect = 9e-60
 Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 2/123 (1%)

Query: 13  QVEGRTIKAQIWDTAGQERYRA-ITSAYYRGALGALLVYDVTKPTTFENVSRWLKEL-RD 70
            V+   +   ++D   Q      +     +     L+V+ VT   +F  V   L  L   
Sbjct: 45  MVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAG 104

Query: 71  HADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE 130
               ++ ++++GNK+DL   R V+ E+ +  A       IETSA    N  + F+  + +
Sbjct: 105 RPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQ 164

Query: 131 IYR 133
           I  
Sbjct: 165 IRL 167

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  182 bits (464), Expect = 2e-59
 Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 2/128 (1%)

Query: 13  QVEGRTIKAQIWDTAGQERYRA-ITSAYYRGALGALLVYDVTKPTTFENVSRWLKEL-RD 70
            V+   +   ++D   Q      +     +     L+V+ VT   +F  V   L  L   
Sbjct: 66  MVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAG 125

Query: 71  HADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE 130
               ++ ++++GNK+DL   R V+ E+ +  A       IETSA    N  + F+  + +
Sbjct: 126 RPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQ 185

Query: 131 IYRIISKK 138
           I     + 
Sbjct: 186 IRLRRGRN 193

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  179 bits (457), Expect = 1e-58
 Identities = 42/122 (34%), Positives = 74/122 (60%), Gaps = 1/122 (0%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDH 71
            ++G  ++  I DTAGQE Y AI   Y+R   G L V+ +T+  +F   + + ++ LR  
Sbjct: 46  VLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK 105

Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
            D N+  +++GNK+DL+  R V+ E+A++ A++  ++++ETSA    NV+K F  ++ EI
Sbjct: 106 EDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

Query: 132 YR 133
             
Sbjct: 166 RA 167

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  178 bits (453), Expect = 6e-58
 Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 3/124 (2%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITS--AYYRGALGALLVYDVTKPTTFENVSRWLKEL-R 69
            V+G      + DT   E+     S  +  +G    ++VY +    +FE+ S    +L R
Sbjct: 46  TVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRR 105

Query: 70  DHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILS 129
            H   ++ I+++GNK DL   R V+ E+ ++ A      FIETSA    NV + F+ ++ 
Sbjct: 106 THQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVR 165

Query: 130 EIYR 133
           ++  
Sbjct: 166 QLRL 169

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  177 bits (452), Expect = 7e-58
 Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 1/122 (0%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
            V+G      ++D   Q+  R +           ++VY VT   +FE  S    +LR   
Sbjct: 43  VVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRAR 102

Query: 73  DS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
            + ++ I+++GNK+DL   R V+ ++ ++ A      FIETSA    NV+  F+ ++ +I
Sbjct: 103 QTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162

Query: 132 YR 133
             
Sbjct: 163 RL 164

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  178 bits (455), Expect = 8e-58
 Identities = 46/160 (28%), Positives = 81/160 (50%), Gaps = 12/160 (7%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDH 71
            ++G  ++  I DTAGQE Y AI   Y+R   G L V+ +T+  +F   + + ++ LR  
Sbjct: 56  VLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK 115

Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
            D N+  +++GNK+DL+  R V+ E+A++ AE+  ++++ETSA    NV+K F  ++ EI
Sbjct: 116 EDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175

Query: 132 YRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 171
                + S              +            ++ CC
Sbjct: 176 RARKMEDSKEKNGKKKRKSLAKR-----------IRERCC 204

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  178 bits (453), Expect = 9e-58
 Identities = 44/128 (34%), Positives = 76/128 (59%), Gaps = 1/128 (0%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDH 71
            ++G  ++  I DTAGQE Y AI   Y+R   G L V+ +T+  +F   + + ++ LR  
Sbjct: 60  VLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK 119

Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
            D N+  +++GNK+DL+  R V+ E+A++ AE+  ++++ETSA    NV+K F  ++ EI
Sbjct: 120 EDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179

Query: 132 YRIISKKS 139
                + S
Sbjct: 180 RARKMEDS 187

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  175 bits (445), Expect = 2e-56
 Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 1/128 (0%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDH 71
            +        + DTAGQ+ Y  +  ++  G  G +LVY VT   +F+ +    ++    H
Sbjct: 66  TLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGH 125

Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
             + + ++++GNK DL   R V   + +  AE  G +F+E+SA E    +  F  ++ EI
Sbjct: 126 GKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185

Query: 132 YRIISKKS 139
            R+ +   
Sbjct: 186 ARVENSYG 193

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  173 bits (441), Expect = 3e-56
 Identities = 54/124 (43%), Positives = 72/124 (58%), Gaps = 3/124 (2%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
            +   T+K +IWDTAGQER+ ++   YYR A  AL+VYDVTKP +F     W+KEL + A
Sbjct: 46  TINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA 105

Query: 73  DSNIVIMMIGNKTDLKHL---RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILS 129
             +I+I ++GNK D       R VA E+ +  AE +GL F ETSA    NV   F  I  
Sbjct: 106 SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGE 165

Query: 130 EIYR 133
           +I  
Sbjct: 166 KIPL 169

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  171 bits (436), Expect = 3e-55
 Identities = 35/127 (27%), Positives = 66/127 (51%), Gaps = 1/127 (0%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDH 71
            V+G   +  I DTAGQE + A+   Y R   G LLV+ +    +F  V +   + LR  
Sbjct: 51  SVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVK 110

Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
              +  ++++GNK DL+  R V   +A ++     +++ E SA   +NV++AF+ ++  +
Sbjct: 111 DRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170

Query: 132 YRIISKK 138
            +   ++
Sbjct: 171 RKYQEQE 177

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  172 bits (437), Expect = 5e-55
 Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 6/130 (4%)

Query: 13  QVEGRT---IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR 69
            V+G +   I   +W+  G+  +  +     +     L+VY +T   +FE  S    +LR
Sbjct: 81  MVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLR 138

Query: 70  DHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTIL 128
               + +I I+++GNK+DL   R V+  + ++ A      FIETSA    NV++ F+ I+
Sbjct: 139 RARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIV 198

Query: 129 SEIYRIISKK 138
            ++      K
Sbjct: 199 RQVRLRRDSK 208

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  167 bits (426), Expect = 1e-53
 Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 6/144 (4%)

Query: 13  QVEGRT---IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR 69
            V+G +   I   +W+  G+  +  +     +     L+VY +T   +FE  S    +LR
Sbjct: 50  MVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLR 107

Query: 70  DHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTIL 128
               + +I I+++GNK+DL   R V+  + ++ A      FIETSA    NV++ F+ I+
Sbjct: 108 RARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIV 167

Query: 129 SEIYRIISKKSLSSGEPAPSNIKE 152
            ++      K  +    A    KE
Sbjct: 168 RQVRLRRDSKEKNERRLAYQKRKE 191

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  165 bits (420), Expect = 7e-53
 Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 1/128 (0%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDH 71
            V G+    Q+ DTAGQ+ Y      Y     G +LVY VT   +FE +     + L   
Sbjct: 48  TVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV 107

Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
               I IM++GNK DL   R ++ E+ ++ AE    +F+E+SA E       F+ I+ E 
Sbjct: 108 GKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 167

Query: 132 YRIISKKS 139
            ++    S
Sbjct: 168 EKMDGACS 175

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  163 bits (415), Expect = 4e-52
 Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 2/124 (1%)

Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
              +      QI DT G  ++ A+           +LVY +T   + E +    +++ + 
Sbjct: 44  ISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEI 103

Query: 72  ADS--NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILS 129
                +I IM++GNK D    R V + +A++ A     +F+ETSA    NV++ FQ +L+
Sbjct: 104 KGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLN 163

Query: 130 EIYR 133
              R
Sbjct: 164 LEKR 167

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  163 bits (414), Expect = 4e-52
 Identities = 32/123 (26%), Positives = 65/123 (52%), Gaps = 1/123 (0%)

Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRD 70
            +V+      +I DTAG E++ ++   Y +   G +LVY +    +F+++     + +R 
Sbjct: 44  IEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRV 103

Query: 71  HADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE 130
                + ++++GNK DL+  R V++ + ++ AE  G  F+ETSA     V++ F  I+ +
Sbjct: 104 KRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQ 163

Query: 131 IYR 133
           +  
Sbjct: 164 MNY 166

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  162 bits (412), Expect = 7e-52
 Identities = 43/122 (35%), Positives = 70/122 (57%), Gaps = 2/122 (1%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
            ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   
Sbjct: 45  VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK 104

Query: 73  DS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           DS ++ ++++GNK+DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI
Sbjct: 105 DSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

Query: 132 YR 133
            +
Sbjct: 164 RQ 165

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  162 bits (413), Expect = 9e-52
 Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++ +     + DTAGQE + A+   Y R   G L+VY VT   +FE+V R+ + +    D
Sbjct: 61  IDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD 120

Query: 74  S-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEA-INVEKAFQTILSEI 131
             +  ++++ NK DL HLR V  +  +  A +  + +IETSA +  +NV+K F  ++  I
Sbjct: 121 RESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

Query: 132 YR 133
            +
Sbjct: 181 RQ 182

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  160 bits (408), Expect = 5e-51
 Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 6/129 (4%)

Query: 15  EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP-TTFENVSRWLKELRDHAD 73
             R +   +WD AG+E + +    +       L VYD++K     + +  WL  ++  A 
Sbjct: 52  RKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS 111

Query: 74  SNIVIMMIGNKTDL---KHLRAVATEDAQSYAEREGLSFI-ETSALEAINVEKAFQTILS 129
            +  ++++G   D+   K  +A  ++  +    + G   I +   + A     A   +  
Sbjct: 112 -SSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRK 170

Query: 130 EIYRIISKK 138
            I       
Sbjct: 171 TIINESLNF 179

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  159 bits (405), Expect = 2e-50
 Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 16/163 (9%)

Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRD- 70
              +      QI DT G  ++ A+           +LV+ VT   + E +    K +   
Sbjct: 49  ISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQI 108

Query: 71  -HADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILS 129
             +  +I +M++GNK D    R V T +AQ+ A+    +F+ETSA    NV++ FQ +L 
Sbjct: 109 KGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELL- 166

Query: 130 EIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCCS 172
               + +++++S       + K+ +T         +  K  C+
Sbjct: 167 ---TLETRRNMSLNIDGKRSGKQKRT---------DRVKGKCT 197

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  158 bits (401), Expect = 4e-50
 Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 2/123 (1%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDH 71
           +V+ +    +I DTAG E++ A+   Y +   G  LVY +T  +TF ++    ++ LR  
Sbjct: 45  EVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK 104

Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAER-EGLSFIETSALEAINVEKAFQTILSE 130
              ++ ++++GNK DL+  R V  E  Q+ A +    +F+E+SA   INV + F  ++ +
Sbjct: 105 DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQ 164

Query: 131 IYR 133
           I R
Sbjct: 165 INR 167

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  158 bits (402), Expect = 5e-50
 Identities = 43/121 (35%), Positives = 69/121 (57%), Gaps = 2/121 (1%)

Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           ++G T    I DTAGQE Y A+   Y R   G L V+ +    +F +++ + ++++   D
Sbjct: 64  IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD 123

Query: 74  S-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
           S ++ ++++GNK DL   R V T+ A   A+  G+ FIETSA     VE AF T++ EI 
Sbjct: 124 SDDVPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 182

Query: 133 R 133
           +
Sbjct: 183 Q 183

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  158 bits (402), Expect = 5e-50
 Identities = 46/140 (32%), Positives = 73/140 (52%), Gaps = 2/140 (1%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
            ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++  + ++++   
Sbjct: 46  VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVK 105

Query: 73  DS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           DS ++ ++++GNK DL   R V T+ AQ  A   G+ FIETSA     V+ AF T++ EI
Sbjct: 106 DSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

Query: 132 YRIISKKSLSSGEPAPSNIK 151
            +   K S    +    +  
Sbjct: 165 RKHKEKMSKDGKKKKKKSKT 184

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  152 bits (387), Expect = 1e-47
 Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDH 71
            ++   +  +I DTAGQE        + R   G +LVYD+T   +FE V           
Sbjct: 70  TIDDEVVSMEILDTAGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIK 128

Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEA-INVEKAFQTILSE 130
              N+ ++++GNK DL H R V+TE+ +  A     +F E SA     N+ + F  +  E
Sbjct: 129 KPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCRE 188

Query: 131 IYR 133
           + R
Sbjct: 189 VRR 191

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  151 bits (385), Expect = 2e-47
 Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 5/125 (4%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
            V+ + +  ++ DTA  +  R     Y   A   L+VY V    +F++ S +L+ L  HA
Sbjct: 63  TVDHQPVHLRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHA 121

Query: 73  ---DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAI-NVEKAFQTIL 128
                +I  +++GNK D+   R V   +  + A R G  F E SA     +V+  F   +
Sbjct: 122 KETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAV 181

Query: 129 SEIYR 133
            E  R
Sbjct: 182 REARR 186

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  157 bits (398), Expect = 3e-46
 Identities = 22/128 (17%), Positives = 41/128 (32%), Gaps = 4/128 (3%)

Query: 6   LGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWL 65
             K  +   E +      WD  GQE   A    +   +   +L+ D     T  N   WL
Sbjct: 85  NIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDS---RTDSNKHYWL 141

Query: 66  KELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQ 125
           + +  +      ++++ NK D      +  +            F   S      VE   +
Sbjct: 142 RHIEKYGG-KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAK 200

Query: 126 TILSEIYR 133
           ++ S +  
Sbjct: 201 SLKSAVLH 208

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  143 bits (363), Expect = 4e-44
 Identities = 20/127 (15%), Positives = 52/127 (40%), Gaps = 9/127 (7%)

Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRD 70
           +  V+G++    I D  G    +     +       + V+ +    +F+ V  +   L  
Sbjct: 59  EIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCS 113

Query: 71  HADS-NIVIMMIGNKTDL--KHLRAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQT 126
             ++  + ++++G +  +   + R +    A+  +      ++ ET A   +NVE+ FQ 
Sbjct: 114 FRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQD 173

Query: 127 ILSEIYR 133
           +  ++  
Sbjct: 174 VAQKVVA 180

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  138 bits (351), Expect = 2e-42
 Identities = 28/138 (20%), Positives = 61/138 (44%), Gaps = 11/138 (7%)

Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE--- 67
           +  V+G+T    I + AG    +     +   A   + V+ +    +F+ VSR   +   
Sbjct: 46  EMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSS 100

Query: 68  LRDHADSNIVIMMIG--NKTDLKHLRAVATEDAQSY-AEREGLSFIETSALEAINVEKAF 124
           LR      + + ++G  ++      R V    A++  A+ +  S+ ET A   +NV++ F
Sbjct: 101 LRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVF 160

Query: 125 QTILSEIYRIISKKSLSS 142
           Q +  ++  +  ++ L +
Sbjct: 161 QEVAQKVVTLRKQQQLLA 178

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  112 bits (283), Expect = 4e-32
 Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 5/120 (4%)

Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
             + +       +WDTAGQE Y  +    Y  +   LL + V   T+F+N+ ++W  E++
Sbjct: 63  VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIK 122

Query: 70  DHADSNIVIMMIGNKTDLKH--LRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQT 126
            + D     +++G K DL+      V  ++     ++ G +++IE S++  I + + F+ 
Sbjct: 123 HYID-TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEK 181

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  111 bits (279), Expect = 1e-31
 Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 13/129 (10%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKEL 68
            +  V G T+   +WDTAGQE Y  +    YRGA   +L + +    ++ENV  +W+ EL
Sbjct: 47  ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL 106

Query: 69  RDHADSNIVIMMIGNKTDL----------KHLRAVATEDAQSYAEREG-LSFIETSALEA 117
           + +A   + I+++G K DL               + T   +   +  G  ++IE S+   
Sbjct: 107 KHYAP-GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQ 165

Query: 118 INVEKAFQT 126
            NV+  F  
Sbjct: 166 ENVKGVFDA 174

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  106 bits (267), Expect = 2e-29
 Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 11/138 (7%)

Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
           +  V+G+ +   +WDTAGQE Y  +    YRGA   +L + +    ++ENV  +W+ ELR
Sbjct: 49  NVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELR 108

Query: 70  DHADSNIVIMMIGNKTDL--------KHLRAVATEDAQSYAEREG-LSFIETSALEAINV 120
             A  N+ I+++G K DL         H   + +   +   ++ G  ++IE S+    NV
Sbjct: 109 RFAP-NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNV 167

Query: 121 EKAFQTILSEIYRIISKK 138
           +  F T +  + +   +K
Sbjct: 168 KAVFDTAIKVVLQPPRRK 185

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  106 bits (266), Expect = 3e-29
 Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 15/131 (11%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKEL 68
            + QV+G+ +   IWDTAGQ+ Y  +   +Y  A   LL +DVT P +F+N+ +RW  E+
Sbjct: 73  VNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV 132

Query: 69  RDHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSAL 115
                  + I+++G KTDL              L  V     Q  A   G ++++E SA 
Sbjct: 133 NHFCK-KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSAR 191

Query: 116 EAINVEKAFQT 126
              NV   FQ 
Sbjct: 192 LHDNVHAVFQE 202

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  105 bits (264), Expect = 3e-29
 Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 15/131 (11%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKEL 68
            D +V+G+ ++  +WDTAGQE Y  +    Y      L+ + +  P + EN+  +W  E+
Sbjct: 64  ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV 123

Query: 69  RDHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSAL 115
           +     N+ I+++GNK DL                 V +E+ +  A R     ++E SA 
Sbjct: 124 KHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 182

Query: 116 EAINVEKAFQT 126
               V + F+ 
Sbjct: 183 TKEGVREVFEM 193

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  105 bits (264), Expect = 1e-28
 Identities = 29/174 (16%), Positives = 55/174 (31%), Gaps = 48/174 (27%)

Query: 7   GKLCDFQVEGRTIKAQIW-------DTAGQERYRAITSAYYRGAL--------------- 44
           G++     +    K  I        D   Q         Y + A                
Sbjct: 83  GEVSRSLEDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCT 142

Query: 45  ----------------------GALLVYDVTKPT--TFENVSRWLKELRDHADS-NIVIM 79
                                 G LL  DV++     F++  +++  L +        I+
Sbjct: 143 DQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIV 202

Query: 80  MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133
           ++  K D    R +      + + ++ L  +ETSA   +NV+ AF T++  I +
Sbjct: 203 VVLTKCDEGVERYIRDAHTFALS-KKNLQVVETSARSNVNVDLAFSTLVQLIDK 255

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  104 bits (260), Expect = 1e-28
 Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 15/131 (11%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKEL 68
            D +V+G+ ++  +WDTAGQE Y  +    Y      L+ + V  P + EN+  +W+ E+
Sbjct: 64  ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEV 123

Query: 69  RDHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSAL 115
           +     N+ I+++ NK DL                 V T+D ++ A R     ++E SA 
Sbjct: 124 KHFCP-NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 182

Query: 116 EAINVEKAFQT 126
               V + F+T
Sbjct: 183 TKEGVREVFET 193

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  101 bits (253), Expect = 2e-27
 Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 15/131 (11%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKEL 68
            +  V+G+ +   +WDTAGQE Y  +    Y      L+ + +  P +FENV ++W  E+
Sbjct: 69  ANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV 128

Query: 69  RDHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSAL 115
           R H   N  I+++G K DL            K L  +      + A+  G + ++E SAL
Sbjct: 129 RHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 187

Query: 116 EAINVEKAFQT 126
               ++  F  
Sbjct: 188 TQRGLKTVFDE 198

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 98.6 bits (246), Expect = 1e-26
 Identities = 31/132 (23%), Positives = 65/132 (49%), Gaps = 16/132 (12%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKEL 68
             F+++ + I+  +WDT+G   Y  +    Y  +   L+ +D+++P T ++V  +W  E+
Sbjct: 46  ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI 105

Query: 69  RDHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSAL 115
           ++    N  ++++G K+DL                 V+ +   + A++ G  ++IE SAL
Sbjct: 106 QEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 164

Query: 116 EAIN-VEKAFQT 126
           ++ N V   F  
Sbjct: 165 QSENSVRDIFHV 176

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 97.9 bits (244), Expect = 2e-26
 Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 15/131 (11%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKEL 68
            +  V+G+ +   +WDTAGQE Y  +    Y     +L+ + +  P +FENV ++W  E+
Sbjct: 44  ANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV 103

Query: 69  RDHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSAL 115
           R H   N  I+++G K DL            K L  +      + A+  G + ++E SAL
Sbjct: 104 RHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 162

Query: 116 EAINVEKAFQT 126
               ++  F  
Sbjct: 163 TQRGLKTVFDE 173

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 98.3 bits (245), Expect = 2e-26
 Identities = 31/132 (23%), Positives = 65/132 (49%), Gaps = 16/132 (12%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKEL 68
             F+++ + I+  +WDT+G   Y  +    Y  +   L+ +D+++P T ++V  +W  E+
Sbjct: 67  ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI 126

Query: 69  RDHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSAL 115
           ++    N  ++++G K+DL                 V+ +   + A++ G  ++IE SAL
Sbjct: 127 QEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 185

Query: 116 EAIN-VEKAFQT 126
           ++ N V   F  
Sbjct: 186 QSENSVRDIFHV 197

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 98.3 bits (245), Expect = 2e-26
 Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 15/131 (11%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKEL 68
               V+GR ++ Q+ DTAGQ+ +  +    Y      LL + V  P++F+NV  +W+ E+
Sbjct: 59  AVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEI 118

Query: 69  RDHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSAL 115
           R H      I+++G ++DL               + V  E A+  AE     S+IE SAL
Sbjct: 119 RCHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSAL 177

Query: 116 EAINVEKAFQT 126
              N+++ F  
Sbjct: 178 TQKNLKEVFDA 188

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 95.3 bits (237), Expect = 3e-25
 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 15/133 (11%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKEL 68
               V G+     ++DTAGQE Y  +    Y      L+ + V  P +F+NV   W+ EL
Sbjct: 57  VSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPEL 116

Query: 69  RDHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSAL 115
           +++A  N+  ++IG + DL               + +  E  Q  A+  G   ++E SAL
Sbjct: 117 KEYAP-NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSAL 175

Query: 116 EAINVEKAFQTIL 128
               ++  F   +
Sbjct: 176 TQKGLKTVFDEAI 188

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 92.2 bits (229), Expect = 6e-24
 Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 16/132 (12%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKEL 68
              + E + ++  +WDT+G   Y  +    Y  +   LL +D+++P T ++   +W  E+
Sbjct: 66  ACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI 125

Query: 69  RDHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSAL 115
            D+   +  +++IG KTDL            +    ++ E   + A++ G   ++E SA 
Sbjct: 126 LDYCP-STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAF 184

Query: 116 -EAINVEKAFQT 126
               ++   F+T
Sbjct: 185 TSEKSIHSIFRT 196

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 87.4 bits (216), Expect = 4e-21
 Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 15/131 (11%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKEL 68
            +  V+G+ +   +WDTAG E Y  +    Y      L+ + +  P +F +V ++W  E+
Sbjct: 194 ANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV 253

Query: 69  RDHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSAL 115
           R H   N  I+++G K DL            K L  +      + A+  G + ++E SAL
Sbjct: 254 RHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 312

Query: 116 EAINVEKAFQT 126
               ++  F  
Sbjct: 313 TQRGLKTVFDE 323

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 74.8 bits (184), Expect = 2e-17
 Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 8/132 (6%)

Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRW---LKELRD 70
           V+G   +  ++   GQ  Y A      RG  G + V D        N        + L +
Sbjct: 69  VKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAE 128

Query: 71  HADS--NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFI-ETSALEAINVEKAFQTI 127
           +  +  ++ I++  NK DL    A+  E  ++  + EG   + E  A E   V +  + +
Sbjct: 129 YGLTLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEV 186

Query: 128 LSEIYRIISKKS 139
              +   ++  S
Sbjct: 187 SRLVLARVAGGS 198

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 20/130 (15%)

Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           VE + I   +WD  GQ++ R +   Y++   G + V D       +  +  L+++    +
Sbjct: 68  VEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDE 127

Query: 74  -SNIVIMMIGNKTDLKHLRAVATEDAQSYAE-REGL----------SFIETSALEAINVE 121
             + V+++  NK D+         +A   +E  + L              T A +   + 
Sbjct: 128 LRDAVLLVFANKQDMP--------NAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY 179

Query: 122 KAFQTILSEI 131
                +  E+
Sbjct: 180 DGLDWLSHEL 189

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 49.2 bits (117), Expect = 6e-08
 Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 18/129 (13%)

Query: 19  IKAQIWDTAGQERYRAITS---AYYRGALGALLVYDVTKPTT--FENVSRWLKELRDHAD 73
           +  QIWD  GQ  +   T      +RG    + V D           +   + +     +
Sbjct: 69  VNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-N 127

Query: 74  SNIVIMMIGNKTDL-----------KHLRAVATEDAQSYAEREGLSFIETSALEAINVEK 122
            ++   +  +K D               +    + A +  E+  LSF  TS  +  ++ +
Sbjct: 128 PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDH-SIFE 186

Query: 123 AFQTILSEI 131
           AF  ++ ++
Sbjct: 187 AFSKVVQKL 195

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 47.2 bits (113), Expect = 3e-07
 Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 6/124 (4%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
            +E R  K  IWD  GQ+  R+    Y+    G + V D       ++  R L+ L    
Sbjct: 56  TLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEE 115

Query: 73  D-SNIVIMMIGNKTDLKHLRAVA--TE--DAQSYAEREGLSFIETSALEAINVEKAFQTI 127
             +   +++  NK DL    +     E  +  S            SA+   ++      +
Sbjct: 116 RLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHH-WRIQGCSAVTGEDLLPGIDWL 174

Query: 128 LSEI 131
           L +I
Sbjct: 175 LDDI 178

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 21/135 (15%), Positives = 47/135 (34%), Gaps = 10/135 (7%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
            ++ + I  ++WD  GQ   R     Y+      + V D T           L  L D  
Sbjct: 60  TLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDED 119

Query: 73  D-SNIVIMMIGNKTDLKH-LRAVATEDA---QSYAEREGLSFIETSALEAINVEKAFQTI 127
           +    ++++  NK DL          +     S   R   + +++S+     + +    +
Sbjct: 120 ELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRT-WTIVKSSSKTGDGLVEGMDWL 178

Query: 128 LSEIYRIISKKSLSS 142
           +      + ++ L +
Sbjct: 179 VER----LREQGLGA 189

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 20/131 (15%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
            +  + +K  +WD  GQ   R     YY      + V D T        S+ L  +    
Sbjct: 56  TLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEE 115

Query: 73  D-SNIVIMMIGNKTDLKHLRAVATEDAQSYAE-REGL----------SFIETSALEAINV 120
           +  +  +++  NK D           A S +E  + L          S + +SA++   +
Sbjct: 116 ELQDAALLVFANKQDQP--------GALSASEVSKELNLVELKDRSWSIVASSAIKGEGI 167

Query: 121 EKAFQTILSEI 131
            +    ++  I
Sbjct: 168 TEGLDWLIDVI 178

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 46.8 bits (112), Expect = 4e-07
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 1/78 (1%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           ++    +  ++WD  GQ R+R++   Y RG    + + D       E     L  L D  
Sbjct: 61  KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP 120

Query: 73  D-SNIVIMMIGNKTDLKH 89
               I ++++GNK DL  
Sbjct: 121 QLQGIPVLVLGNKRDLPG 138

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 24/138 (17%), Positives = 48/138 (34%), Gaps = 20/138 (14%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           ++     +  +WD  GQE  R+  + YY      ++V D T           L ++  H 
Sbjct: 54  EIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHE 113

Query: 73  D-SNIVIMMIGNKTDLKHLRAVATEDAQSYAE-REGL----------SFIETSALEAINV 120
           D     +++  NK D+K        +  + AE  + L                AL    +
Sbjct: 114 DLRKAGLLIFANKQDVK--------ECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 165

Query: 121 EKAFQTILSEIYRIISKK 138
            +  + ++S +   +   
Sbjct: 166 CQGLEWMMSRLKIRLEHH 183

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 46.4 bits (111), Expect = 5e-07
 Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 10/126 (7%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
            V+ +  K  +WD  GQ + R    +Y+      + V D      FE   + L EL +  
Sbjct: 54  SVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEE 113

Query: 73  D-SNIVIMMIGNKTDLKHLRAVATED------AQSYAEREGLSFIETSALEAINVEKAFQ 125
             S + +++  NK DL    A    +        +  +R        SAL    V+    
Sbjct: 114 KLSCVPVLIFANKQDLLT--AAPASEIAEGLNLHTIRDRV-WQIQSCSALTGEGVQDGMN 170

Query: 126 TILSEI 131
            +   +
Sbjct: 171 WVCKNV 176

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 46.4 bits (111), Expect = 5e-07
 Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 10/126 (7%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
            VE + I   +WD  GQ++ R +   Y++   G + V D             L  +    
Sbjct: 38  TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED 97

Query: 73  D-SNIVIMMIGNKTDLKHLRAVATED------AQSYAEREGLSFIETSALEAINVEKAFQ 125
           +  + V+++  NK DL +  A+   +        S   R       T A     + +   
Sbjct: 98  ELRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSLRHRN-WYIQATCATSGDGLYEGLD 154

Query: 126 TILSEI 131
            + +++
Sbjct: 155 WLSNQL 160

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 46.5 bits (111), Expect = 5e-07
 Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 12/128 (9%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH- 71
           + +  ++   ++D +GQ RYR +   YY+     + V D +           L  L +H 
Sbjct: 61  KFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHP 120

Query: 72  --ADSNIVIMMIGNKTDLKHLRAVATED------AQSYAEREGLSFIETSALEAINVEKA 123
                 I I+   NK DL+   AV +         ++  ++       + A++   +++ 
Sbjct: 121 DIKHRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKP-WHICASDAIKGEGLQEG 177

Query: 124 FQTILSEI 131
              +  +I
Sbjct: 178 VDWLQDQI 185

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 45.6 bits (109), Expect = 9e-07
 Identities = 20/124 (16%), Positives = 49/124 (39%), Gaps = 6/124 (4%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
            V  + +K Q+WD  G    R     YY      + V D             L  + +  
Sbjct: 45  TVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEE 104

Query: 73  D-SNIVIMMIGNKTDLK-HLRAVATEDA---QSYAEREGLSFIETSALEAINVEKAFQTI 127
           +    ++++  NK D++  + +    ++    +  +R+     +TSA +   +++A + +
Sbjct: 105 ELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRK-WQIFKTSATKGTGLDEAMEWL 163

Query: 128 LSEI 131
           +  +
Sbjct: 164 VETL 167

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 20/131 (15%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           ++     +  +WD  GQE  R+  + YY      ++V D T           L ++  H 
Sbjct: 59  EIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHE 118

Query: 73  D-SNIVIMMIGNKTDLKHLRAVATEDAQSYAE-REGL----------SFIETSALEAINV 120
           D     +++  NK D+K        +  + AE  + L                AL    +
Sbjct: 119 DLRKAGLLIFANKQDVK--------ECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 170

Query: 121 EKAFQTILSEI 131
            +  + ++S +
Sbjct: 171 CQGLEWMMSRL 181

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 44.6 bits (105), Expect = 4e-06
 Identities = 22/131 (16%), Positives = 48/131 (36%), Gaps = 19/131 (14%)

Query: 19  IKAQIWDTAGQERYRAIT-----SAYYRGALGALLVYDVTKPTTFENVSRW---LKELRD 70
           +   +WD  GQ+ +            ++     + V+DV      +++  +   LK+LR 
Sbjct: 52  MTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRK 111

Query: 71  HADSNIVIMMIGNKTDL--KHLRAVATEDAQSYAERE-------GLSFIETSALEAINVE 121
           ++  +  I ++ +K DL     R    +                 L    TS  +  ++ 
Sbjct: 112 YS-PDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDE-SLY 169

Query: 122 KAFQTILSEIY 132
           KA+  I+  + 
Sbjct: 170 KAWSQIVCSLI 180

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 1e-05
 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 18/108 (16%)

Query: 50  YDVTKPTTFENVSRWLKELRDHADSNIVIM-MIGN-KTDLKHLRAVATEDAQSYAEREGL 107
           Y+V++   +  + + L ELR     N++I  ++G+ KT +      A +   SY  +  +
Sbjct: 129 YNVSRLQPYLKLRQALLELRPA--KNVLIDGVLGSGKTWV------ALDVCLSYKVQCKM 180

Query: 108 SF----IETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIK 151
            F    +    L+  N  +    +L ++   I     S  +   SNIK
Sbjct: 181 DFKIFWLN---LKNCNSPETVLEMLQKLLYQIDPNWTSRSDH-SSNIK 224

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 1/77 (1%)

Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
           VE + I   +WD  GQ++ R +   Y++   G + V D             L  +    +
Sbjct: 204 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE 263

Query: 74  -SNIVIMMIGNKTDLKH 89
             + V+++  NK DL +
Sbjct: 264 LRDAVLLVFANKQDLPN 280

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 1/78 (1%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           ++    +    +D  G  + R +   Y     G + + D             L  L    
Sbjct: 63  ELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDE 122

Query: 73  D-SNIVIMMIGNKTDLKH 89
             +N+ I+++GNK D   
Sbjct: 123 TIANVPILILGNKIDRPE 140

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 1/78 (1%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
           ++    IK   +D  G  + R +   Y+    G + + D   P  F+     L  L + A
Sbjct: 61  ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIA 120

Query: 73  D-SNIVIMMIGNKTDLKH 89
           +  ++  +++GNK D  +
Sbjct: 121 ELKDVPFVILGNKIDAPN 138

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 37.8 bits (88), Expect = 8e-04
 Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 11/101 (10%)

Query: 14  VEGRTIKAQIWDTAGQERYRAITSAYYRGALGAL--LVYDV---TKPTTFENVSRWLKEL 68
            +       + D  G  + R   S Y +     +  L++ V     P      + +L ++
Sbjct: 50  ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDI 109

Query: 69  ----RDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAERE 105
                   ++ I I++  NK++L    A      +   E E
Sbjct: 110 LSITESSCENGIDILIACNKSELFT--ARPPSKIKDALESE 148

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	174
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.96
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.96
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.95
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.95
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.95
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.94
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.94
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.94
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.94
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.94
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.94
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.94
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.94
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.94
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.94
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.94
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.94
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.94
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.94
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.93
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.93
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.93
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.93
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.93
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.93
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.93
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.93
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.93
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.93
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.93
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.93
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.93
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.93
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.93
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.93
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.93
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.93
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.93
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.93
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.93
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.93
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.93
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.93
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.93
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.93
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.93
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.93
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.93
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.93
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.93
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.93
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.93
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.92
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.92
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.92
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.92
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.92
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.92
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.92
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.92
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.92
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.92
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.92
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.92
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.92
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.92
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.92
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.92
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.91
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.91
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.91
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.91
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.91
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.91
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.91
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.91
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.91
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.9
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.9
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.9
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.9
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.89
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.89
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.89
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.88
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.88
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.81
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.88
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.88
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.88
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.88
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.88
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.87
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.87
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.87
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.87
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.87
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.86
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.86
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.85
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.85
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.85
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.85
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.85
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.85
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.84
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.84
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.83
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.82
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.82
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.82
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.82
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.82
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.81
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.79
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.78
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.78
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.77
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.77
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.76
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.76
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.76
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.76
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.73
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.72
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.72
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.71
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.71
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.71
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.7
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.68
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.68
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.68
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.67
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.67
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.66
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.66
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.66
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.65
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.64
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.63
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.62
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.61
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.59
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.59
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.57
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.56
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.55
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.55
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.55
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.53
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.53
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.51
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.51
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.51
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.51
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.5
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.5
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.49
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.49
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.48
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.48
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.47
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.46
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.44
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.43
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.42
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.41
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.41
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.4
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.4
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.39
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.35
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.35
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.35
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.32
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.31
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.29
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.28
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.28
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.23
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.21
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.19
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.16
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.16
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.15
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.15
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.09
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.08
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.08
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.06
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.05
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.02
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.0
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.98
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	98.96
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.9
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	98.9
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	98.88
1wxq_A	397	GTP-binding protein; structural genomics, riken st	98.87
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.81
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.8
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.77
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	98.76
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.74
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.67
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	98.59
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.43
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.41
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.41
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	98.38
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.37
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.32
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	98.27
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.19
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.54
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	97.49
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.19
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	95.86
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	95.71
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	95.45
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	95.41
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	95.03
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	94.2
3cwq_A	209	Para family chromosome partitioning protein; alpha	94.17
3end_A	307	Light-independent protochlorophyllide reductase ir	93.1
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	92.99
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	92.94
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	92.87
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	91.67
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	91.51
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	91.31
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	91.07
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	88.67
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	88.1
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	87.64
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	85.57
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	83.64
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	83.37
3pg5_A	361	Uncharacterized protein; structural genomics, PSI-	83.2
2xxa_A	433	Signal recognition particle protein; protein trans	81.98
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	80.58

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=1.9e-35  Score=218.07  Aligned_cols=133  Identities=35%  Similarity=0.659  Sum_probs=117.7

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||+|   ..+.+.+++..+.++||||+|+++|..++..|+++++++++|||++++++|+.+..|+..+......++|++|
T Consensus        44 ~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piil  123 (216)
T 4dkx_A           44 ATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML  123 (216)
T ss_dssp             ------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEE
T ss_pred             CccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence            6777   4556778999999999999999999999999999999999999999999999999999999877767899999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIIS  136 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~  136 (174)
                      ||||+|+.+.+.++.+++++++.++++.|+++||++|.||+++|+.|++.+.....
T Consensus       124 VgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~~~~  179 (216)
T 4dkx_A          124 VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES  179 (216)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC-----
T ss_pred             EeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHhhhc
Confidence            99999999888999999999999999999999999999999999999998876543

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.96  E-value=2.5e-28  Score=177.83  Aligned_cols=135  Identities=44%  Similarity=0.794  Sum_probs=121.0

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||+|   ..+.+.+++..+.+.||||+|+++|...+..+++++|++|||||+++.+++..+..|+..+......+.|+++
T Consensus        39 ~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piil  118 (206)
T 2bcg_Y           39 STIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLL  118 (206)
T ss_dssp             CSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             CcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence            5555   3346678899999999999999999999999999999999999999999999999999998877656799999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK  138 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~  138 (174)
                      |+||+|+.+.+.+..+++..++...+++++++||+++.|++++|+++.+.+.+.....
T Consensus       119 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~~  176 (206)
T 2bcg_Y          119 VGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQ  176 (206)
T ss_dssp             EEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHCCHH
T ss_pred             EEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHhhc
Confidence            9999999887788889999999999999999999999999999999999998765443

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.96  E-value=3.8e-27  Score=171.05  Aligned_cols=134  Identities=31%  Similarity=0.509  Sum_probs=119.5

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piil   80 (174)
                      ||++  ....+.+++..+.+.||||+|++.|..++..+++.+|++++|||+++.+++..+..|+..+..... .++|+++
T Consensus        45 ~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil  124 (206)
T 2bov_A           45 PTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL  124 (206)
T ss_dssp             TTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEE
T ss_pred             CccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence            4555  334567889889999999999999999999999999999999999999999999999999877653 4799999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISK  137 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~  137 (174)
                      |+||+|+.+.+.+..+++..++..++++++++||+++.|++++|+++++.+......
T Consensus       125 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~  181 (206)
T 2bov_A          125 VGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKME  181 (206)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             EEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHcccc
Confidence            999999988778889999999999999999999999999999999999999876433

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.95  E-value=3.2e-27  Score=168.66  Aligned_cols=129  Identities=44%  Similarity=0.808  Sum_probs=104.4

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      .+.+++..+.+.||||+|++.|...+..+++++|++|+|||++++++++.+..|+..+......++|+++|+||+|+.+.
T Consensus        49 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~  128 (183)
T 2fu5_C           49 TIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK  128 (183)
T ss_dssp             EEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSC
T ss_pred             EEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCcc
Confidence            45568888999999999999999999999999999999999999999999999999988765567999999999999877


Q ss_pred             cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q 043745           91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKS  139 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~  139 (174)
                      +.+..++++.++..++++++++||+++.|++++|+++.+.+.+...+..
T Consensus       129 ~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~~~~~~~  177 (183)
T 2fu5_C          129 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNW  177 (183)
T ss_dssp             CCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhccc
Confidence            7888899999999999999999999999999999999999998776554

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.1e-27  Score=175.32  Aligned_cols=131  Identities=56%  Similarity=0.974  Sum_probs=113.2

Q ss_pred             eeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745            9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus         9 ~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      .+.+.+++..+.+.||||+|+++|..++..+++.+|++|+|||+++..+++.+..|+..+......++|++||+||+|+.
T Consensus        52 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~  131 (223)
T 3cpj_B           52 TRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA  131 (223)
T ss_dssp             EEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG
T ss_pred             EEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence            34567888889999999999999999999999999999999999999999999999999887765679999999999998


Q ss_pred             CccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q 043745           89 HLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKS  139 (174)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~  139 (174)
                      +.+.+..+++..++...+++++++||+++.|++++|+++++.+.+.....+
T Consensus       132 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~  182 (223)
T 3cpj_B          132 HLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQ  182 (223)
T ss_dssp             GGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHTTCC----
T ss_pred             cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence            777888899999999999999999999999999999999999887654443

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.95  E-value=7.5e-27  Score=169.73  Aligned_cols=129  Identities=43%  Similarity=0.694  Sum_probs=112.3

Q ss_pred             eeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC----CCCeEEEEEeC
Q 043745            9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD----SNIVIMMIGNK   84 (174)
Q Consensus         9 ~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK   84 (174)
                      .+.+.+++..+.+.||||+|++.|..++..+++++|++|+|||+++++++..+..|+..+.....    .++|+++|+||
T Consensus        47 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK  126 (207)
T 1vg8_A           47 TKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNK  126 (207)
T ss_dssp             EEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEEC
T ss_pred             EEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEEC
Confidence            34556788889999999999999999999999999999999999999999999999988866542    36899999999


Q ss_pred             CCCCCccCCCHHHHHHHHH-HhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q 043745           85 TDLKHLRAVATEDAQSYAE-REGLSFIETSALEAINVEKAFQTILSEIYRIISKK  138 (174)
Q Consensus        85 ~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~  138 (174)
                      +|+.+ +.+..++++.++. ..+++++++||+++.|++++|+++++.+.+.....
T Consensus       127 ~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~  180 (207)
T 1vg8_A          127 IDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV  180 (207)
T ss_dssp             TTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcc-cccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhcccc
Confidence            99983 5677888888887 66789999999999999999999999998766443

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.94  E-value=5.5e-26  Score=165.22  Aligned_cols=132  Identities=46%  Similarity=0.769  Sum_probs=117.0

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||+|   ..+.+.+++..+.+.||||+|+++|..++..+++++|++|+|||++++++++.+..|+..+......++|+++
T Consensus        60 ~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piil  139 (201)
T 2hup_A           60 STIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLL  139 (201)
T ss_dssp             -----CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred             CCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence            5555   2446677888899999999999999999999999999999999999999999999999998877656799999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                      |+||+|+.+.+.+..+++++++..+++ +++++||+++.|++++|+++++.+.+..
T Consensus       140 v~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~  195 (201)
T 2hup_A          140 IGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRH  195 (201)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             EEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            999999987778889999999999999 9999999999999999999999988654

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.94  E-value=1.5e-25  Score=161.43  Aligned_cols=130  Identities=45%  Similarity=0.786  Sum_probs=118.3

Q ss_pred             eeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745            9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus         9 ~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      ...+.+++..+.+.|||++|++.|..++..+++.+|++|+|||+++.++++.+..|+..+......++|+++|+||+|+.
T Consensus        55 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~  134 (196)
T 3tkl_A           55 IRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT  134 (196)
T ss_dssp             EEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred             EEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence            34567788899999999999999999999999999999999999999999999999999988776689999999999998


Q ss_pred             CccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q 043745           89 HLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK  138 (174)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~  138 (174)
                      +.+.+..++.+.++..++++++++||+++.|++++|+++.+.+.++....
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~~~  184 (196)
T 3tkl_A          135 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPG  184 (196)
T ss_dssp             TTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHHHC---
T ss_pred             cccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHhccc
Confidence            88888899999999999999999999999999999999999998875543

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.94  E-value=3.4e-26  Score=160.60  Aligned_cols=125  Identities=26%  Similarity=0.352  Sum_probs=99.2

Q ss_pred             eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCC
Q 043745           10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLK   88 (174)
Q Consensus        10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~   88 (174)
                      +.+.+++..+.+.+||++|++.|..++..+++.+|++++|||++++++++.+..|+..+..... .++|+++|+||+|+.
T Consensus        40 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  119 (166)
T 3q72_A           40 RSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV  119 (166)
T ss_dssp             EEEEETTEEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCC
T ss_pred             EEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccc
Confidence            3566899999999999999999999999999999999999999999999999999998876532 579999999999998


Q ss_pred             CccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           89 HLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      +.+.+..++.+.++...+++++++||+++.|++++|+++.+.+..+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  165 (166)
T 3q72_A          120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR  165 (166)
T ss_dssp             SSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence            8788999999999999999999999999999999999999988764

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.94  E-value=1.7e-25  Score=161.03  Aligned_cols=129  Identities=52%  Similarity=0.876  Sum_probs=118.2

Q ss_pred             eeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745            9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus         9 ~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      .+.+.+++..+.+.||||+|++.|..++..+++++|++|+|||+++.++++.+..|+..+......+.|+++|+||+|+.
T Consensus        60 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~  139 (191)
T 2a5j_A           60 ARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE  139 (191)
T ss_dssp             EEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred             EEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence            34567788899999999999999999999999999999999999999999999999999887765689999999999998


Q ss_pred             CccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q 043745           89 HLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISK  137 (174)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~  137 (174)
                      +.+.+..++++.++...+++++++||+++.|++++|+++++.+.+...+
T Consensus       140 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~  188 (191)
T 2a5j_A          140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ  188 (191)
T ss_dssp             GGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHT
T ss_pred             CccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            7778888999999999999999999999999999999999999887644

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=1.2e-25  Score=163.68  Aligned_cols=132  Identities=36%  Similarity=0.682  Sum_probs=119.4

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||+|   ..+.+.+++..+.+.||||+|+++|..++..+++++|++|+|||++++++|+.+..|+..+......++|+++
T Consensus        57 ~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piil  136 (201)
T 2ew1_A           57 ATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVL  136 (201)
T ss_dssp             CCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred             CccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence            4555   3346678899999999999999999999999999999999999999999999999999998877666799999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                      |+||+|+.+.+.+..++++.++...+++++++||+++.|++++|+++++.+.+..
T Consensus       137 v~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~  191 (201)
T 2ew1_A          137 VGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEA  191 (201)
T ss_dssp             EEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            9999999877788889999999999999999999999999999999999988765

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.94  E-value=9.2e-26  Score=160.24  Aligned_cols=128  Identities=44%  Similarity=0.766  Sum_probs=117.8

Q ss_pred             eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      ..+.+++..+.+.|||++|++.+...+..+++++|++++|||+++++++..+..|+..+..... ++|+++|+||+|+.+
T Consensus        49 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~  127 (181)
T 3tw8_B           49 RTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPE  127 (181)
T ss_dssp             EEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCT-TSEEEEEEECTTCGG
T ss_pred             EEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCCch
Confidence            4566788889999999999999999999999999999999999999999999999999877654 799999999999988


Q ss_pred             ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q 043745           90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK  138 (174)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~  138 (174)
                      .+.+..++...++...+++++++||+++.|++++|+++.+.+.....+.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~  176 (181)
T 3tw8_B          128 RKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDN  176 (181)
T ss_dssp             GCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHhhhh
Confidence            7888889999999999999999999999999999999999998876554

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.94  E-value=4.9e-26  Score=160.26  Aligned_cols=123  Identities=24%  Similarity=0.324  Sum_probs=106.8

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhh-hhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCC
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRA-ITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLK   88 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~-~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~   88 (174)
                      .+.+++..+.+.+||++|++.+.. ++..+++++|++++|||++++++++.+..|+..+..... .++|+++|+||+|+.
T Consensus        43 ~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  122 (169)
T 3q85_A           43 RIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA  122 (169)
T ss_dssp             EEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG
T ss_pred             EEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh
Confidence            556788899999999999999876 788889999999999999999999999999999877654 479999999999998


Q ss_pred             CccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           89 HLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      +.+.+..++++.++..++++++++||+++.|++++|+++++.+..
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~  167 (169)
T 3q85_A          123 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL  167 (169)
T ss_dssp             GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             hcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHHh
Confidence            778899999999999999999999999999999999999998765

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.94  E-value=1.3e-25  Score=158.78  Aligned_cols=127  Identities=25%  Similarity=0.345  Sum_probs=107.3

Q ss_pred             eeEEEECCeEEEEEEEeCCCchh--hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCC
Q 043745            9 LCDFQVEGRTIKAQIWDTAGQER--YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMIGNKT   85 (174)
Q Consensus         9 ~~~~~~~~~~~~l~l~D~~G~~~--~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~   85 (174)
                      .+.+.+++..+.+.+|||+|++.  +..++..+++.+|++++|||++++++|+.+..|+..+.... ..++|+++|+||+
T Consensus        42 ~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~  121 (175)
T 2nzj_A           42 ERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKA  121 (175)
T ss_dssp             EEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECT
T ss_pred             EEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEECh
Confidence            34667889899999999999988  56778889999999999999999999999999998887653 2478999999999


Q ss_pred             CCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745           86 DLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus        86 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                      |+.+.+.+..++.+.++..++++++++||++|.|++++|+++.+.+....
T Consensus       122 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  171 (175)
T 2nzj_A          122 DLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRR  171 (175)
T ss_dssp             TCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             hhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence            99887788888999999999999999999999999999999999987654

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.94  E-value=3.9e-25  Score=160.41  Aligned_cols=135  Identities=38%  Similarity=0.706  Sum_probs=121.3

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||+|   ..+.+.+++..+.+.||||+|++.|...+..+++++|++|+|||++++++++.+..|+..+......+.|+++
T Consensus        39 ~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil  118 (203)
T 1zbd_A           39 STVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLL  118 (203)
T ss_dssp             CCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEE
T ss_pred             CccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence            4555   2345667888999999999999999999999999999999999999999999999999998877655799999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK  138 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~  138 (174)
                      |+||+|+.+.+.+..++++.++..++++++++||+++.|++++|+++.+.+.+.+.+.
T Consensus       119 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~  176 (203)
T 1zbd_A          119 VGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSES  176 (203)
T ss_dssp             EEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHHHHHHT
T ss_pred             EEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            9999999887788889999999999999999999999999999999999998887655

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.94  E-value=2.8e-25  Score=158.78  Aligned_cols=136  Identities=45%  Similarity=0.701  Sum_probs=121.6

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||+|   ..+.+.+++..+.+.|||++|++.|...+..+++++|++|+|||+++++++..+..|+..+......++|+++
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil  120 (186)
T 2bme_A           41 HTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIIL  120 (186)
T ss_dssp             CCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred             CccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence            4555   3345667888899999999999999999999999999999999999999999999999988776656899999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKS  139 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~  139 (174)
                      |+||+|+...+.+..+++..++...+++++++||+++.|++++|+++++.+.+...+..
T Consensus       121 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~  179 (186)
T 2bme_A          121 CGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGE  179 (186)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHSCC
T ss_pred             EEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHhhhcC
Confidence            99999998777888899999999999999999999999999999999999998775554

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.94  E-value=2.9e-25  Score=161.20  Aligned_cols=131  Identities=46%  Similarity=0.728  Sum_probs=118.9

Q ss_pred             eeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745            9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus         9 ~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      .+.+.+++..+.+.||||+|++.|..++..+++.+|++|+|||+++.++++.+..|+..+......++|+++|+||+|+.
T Consensus        64 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  143 (200)
T 2o52_A           64 SRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD  143 (200)
T ss_dssp             EEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG
T ss_pred             EEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence            34566788889999999999999999999999999999999999999999999999999877665689999999999998


Q ss_pred             CccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q 043745           89 HLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKS  139 (174)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~  139 (174)
                      ..+.+...++..++...+++++++||+++.|++++|+++++.+.....+..
T Consensus       144 ~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~~~  194 (200)
T 2o52_A          144 PEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGE  194 (200)
T ss_dssp             GGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHTTS
T ss_pred             cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCC
Confidence            777888889999999999999999999999999999999999988775554

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.94  E-value=4.7e-25  Score=158.40  Aligned_cols=132  Identities=41%  Similarity=0.728  Sum_probs=118.5

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||+|   ..+.+.+++..+.+.|||++|++.|...+..+++.+|++|+|||+++.++++.+..|+..+......+.|+++
T Consensus        53 ~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil  132 (189)
T 2gf9_A           53 STVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVIL  132 (189)
T ss_dssp             CCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred             CceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence            4555   2345567888999999999999999999999999999999999999999999999999998877655799999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                      |+||+|+.+.+.+..+++++++..++++++++||+++.|++++|+++.+.+.+.+
T Consensus       133 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~  187 (189)
T 2gf9_A          133 VGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKM  187 (189)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             EEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence            9999999877788888999999999999999999999999999999999988764

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.94  E-value=4.3e-25  Score=157.91  Aligned_cols=128  Identities=34%  Similarity=0.557  Sum_probs=112.5

Q ss_pred             eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCC
Q 043745           10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLK   88 (174)
Q Consensus        10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~   88 (174)
                      ..+.+++..+.+.||||+|++.|..++..++..+|++++|||+++.+++..+..|+..+..... .+.|+++|+||+|+.
T Consensus        43 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~  122 (189)
T 4dsu_A           43 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP  122 (189)
T ss_dssp             EEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS
T ss_pred             EEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc
Confidence            3556789999999999999999999999999999999999999999999999999998877543 579999999999997


Q ss_pred             CccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q 043745           89 HLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK  138 (174)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~  138 (174)
                      + +.+..++.+.++..++++++++||+++.|++++|+++.+.+.......
T Consensus       123 ~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~  171 (189)
T 4dsu_A          123 S-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKM  171 (189)
T ss_dssp             S-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             c-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhhhhc
Confidence            5 567788999999999999999999999999999999999998776544

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.94  E-value=5.3e-25  Score=156.03  Aligned_cols=130  Identities=48%  Similarity=0.826  Sum_probs=116.6

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||.|   ..+.+.+++..+.+.||||+|++.+...+..+++++|++++|||+++.++++.+..|+..+......+.|+++
T Consensus        46 ~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil  125 (179)
T 1z0f_A           46 HTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIIL  125 (179)
T ss_dssp             TSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred             CccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence            4555   3445678888999999999999999999999999999999999999999999999999998877656899999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      |+||+|+.+.+.+..+++++++..++++++++||+++.|++++|+++++.+.+
T Consensus       126 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  178 (179)
T 1z0f_A          126 IGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ  178 (179)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             EEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            99999998777888899999999999999999999999999999999988753

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.93  E-value=8.4e-26  Score=162.70  Aligned_cols=127  Identities=42%  Similarity=0.721  Sum_probs=116.5

Q ss_pred             eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      +.+.+++..+.+.|||++|++.|..++..+++++|++|+|||++++++++.+..|+..+......++|+++|+||+|+.+
T Consensus        63 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~  142 (191)
T 3dz8_A           63 KTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE  142 (191)
T ss_dssp             EEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred             EEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence            35566777889999999999999999999999999999999999999999999999999887666899999999999988


Q ss_pred             ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q 043745           90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIIS  136 (174)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~  136 (174)
                      .+.+..++.+.++..++++++++||+++.|++++|+++++.+.+.+.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  189 (191)
T 3dz8_A          143 ERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS  189 (191)
T ss_dssp             GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred             ccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence            78889999999999999999999999999999999999999987653

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.93  E-value=4.4e-26  Score=166.59  Aligned_cols=131  Identities=29%  Similarity=0.546  Sum_probs=112.4

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piil   80 (174)
                      ||+|  ..+.+.+++..+.+.||||+|++.|..++..+++++|++|+|||++++++++.+. .|+..+....+ ++|+++
T Consensus        40 ~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piil  118 (212)
T 2j0v_A           40 PTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVL  118 (212)
T ss_dssp             CSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEE
T ss_pred             CccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEE
Confidence            5666  3445667888999999999999999999999999999999999999999999996 89999877654 799999


Q ss_pred             EEeCCCCCCccC--------CCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRA--------VATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus        81 v~nK~Dl~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                      |+||+|+.+.+.        +..+++.+++..++. +++++||+++.|++++|+++++.+....
T Consensus       119 v~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  182 (212)
T 2j0v_A          119 VGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP  182 (212)
T ss_dssp             EEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC-
T ss_pred             EEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhhh
Confidence            999999976443        478889999999996 9999999999999999999999887644

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.93  E-value=9.3e-25  Score=155.79  Aligned_cols=130  Identities=31%  Similarity=0.527  Sum_probs=116.4

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piil   80 (174)
                      ||++  ..+.+.+++..+.+.|||++|++.|..++..+++++|++++|||++++++|+.+..|+..+.... ..++|+++
T Consensus        49 ~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~il  128 (183)
T 3kkq_A           49 PTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMIL  128 (183)
T ss_dssp             TTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEE
T ss_pred             CCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence            4444  34466789999999999999999999999999999999999999999999999999999886543 35789999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEecc-CCCCHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSAL-EAINVEKAFQTILSEIYR  133 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~~v~~~l~~~i~~  133 (174)
                      |+||+|+.+.+.+..++++.++..++++++++||+ ++.|++++|+++.+.+.+
T Consensus       129 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          129 VANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             EEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             EEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence            99999998878899999999999999999999999 999999999999988764

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.93  E-value=7.6e-25  Score=155.74  Aligned_cols=130  Identities=44%  Similarity=0.761  Sum_probs=116.4

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||+|   ..+.+.+++..+.+.|||++|++.|...+..+++++|++|+|||+++..+++.+..|+..+......++|+++
T Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~  122 (181)
T 2efe_B           43 STIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMAL  122 (181)
T ss_dssp             CCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             CCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence            4555   3445668888999999999999999999999999999999999999999999999999998877656899999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      |+||+|+.+.+.+..++++.++...+++++++||+++.|++++|+++.+.+..
T Consensus       123 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  175 (181)
T 2efe_B          123 AGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPR  175 (181)
T ss_dssp             EEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred             EEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            99999998777888899999999999999999999999999999999887654

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.93  E-value=8.9e-25  Score=157.35  Aligned_cols=133  Identities=57%  Similarity=0.919  Sum_probs=119.3

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||+|   ..+.+.+++..+.+.||||+|+++|..++..+++++|++|||||++++.++..+..|+..+......++|+++
T Consensus        56 ~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piil  135 (193)
T 2oil_A           56 TTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVML  135 (193)
T ss_dssp             CCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEE
T ss_pred             CccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence            5555   3345667888999999999999999999999999999999999999999999999999998776556799999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIIS  136 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~  136 (174)
                      |+||+|+.+.+.+..++++.++...+++++++||+++.|++++|+++++.+.+...
T Consensus       136 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  191 (193)
T 2oil_A          136 VGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVS  191 (193)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            99999998777788899999999999999999999999999999999999987653

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.93  E-value=2.3e-25  Score=158.68  Aligned_cols=132  Identities=31%  Similarity=0.427  Sum_probs=116.6

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piil   80 (174)
                      ||++  ..+.+.+++..+.+.|||++|++.|..++..+++++|++++|||++++++++.+..|+..+..... .++|+++
T Consensus        37 ~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~il  116 (181)
T 3t5g_A           37 PTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIML  116 (181)
T ss_dssp             TTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEE
T ss_pred             CCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence            5555  345667899999999999999999999999999999999999999999999999999998866543 4799999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                      |+||+|+.+.+.+..++++.++..++++++++||+++.|++++|+++++.+....
T Consensus       117 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  171 (181)
T 3t5g_A          117 VGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMD  171 (181)
T ss_dssp             EEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHTC-
T ss_pred             EEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence            9999999888889999999999999999999999999999999999999887643

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.93  E-value=6.9e-25  Score=155.82  Aligned_cols=124  Identities=45%  Similarity=0.788  Sum_probs=105.8

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      .+.+++..+.+.|||++|++.|...+..+++++|++++|||++++++++.+..|+..+......++|+++|+||+|+.+.
T Consensus        52 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~  131 (180)
T 2g6b_A           52 VLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE  131 (180)
T ss_dssp             EEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSC
T ss_pred             EEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcc
Confidence            45678889999999999999999999999999999999999999999999999999988776567999999999999887


Q ss_pred             cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      +.+..++.+.++..++++++++||+++.|++++|+++.+.+.+.
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  175 (180)
T 2g6b_A          132 RVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRR  175 (180)
T ss_dssp             CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred             cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            78888999999999999999999999999999999999887643

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.93  E-value=7.4e-25  Score=158.69  Aligned_cols=125  Identities=23%  Similarity=0.307  Sum_probs=112.6

Q ss_pred             eeEEEECCeEEEEEEEeCCCchhhhh-hhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCC
Q 043745            9 LCDFQVEGRTIKAQIWDTAGQERYRA-ITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTD   86 (174)
Q Consensus         9 ~~~~~~~~~~~~l~l~D~~G~~~~~~-~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~D   86 (174)
                      .+.+.+++..+.+.+|||+|++.+.. ++..+++++|++|+|||++++++|..+..|+..+..... .++|+++|+||+|
T Consensus        62 ~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D  141 (195)
T 3cbq_A           62 ERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSD  141 (195)
T ss_dssp             EEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTT
T ss_pred             EEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechh
Confidence            44567899999999999999998765 888899999999999999999999999999998876543 4799999999999


Q ss_pred             CCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           87 LKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        87 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      +.+.+.+..++++.++..++++++++||+++.|++++|+++++.+..
T Consensus       142 l~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~  188 (195)
T 3cbq_A          142 LARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL  188 (195)
T ss_dssp             CTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred             ccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence            98777888999999999999999999999999999999999988754

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.93  E-value=7.8e-25  Score=155.41  Aligned_cols=132  Identities=26%  Similarity=0.494  Sum_probs=117.0

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhh-cCCCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH-ADSNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piil   80 (174)
                      ||++  ..+.+.+++..+.+.|||++|+++|..++..+++.+|++++|||+++.+++..+..|+..+... ...++|+++
T Consensus        40 ~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piil  119 (181)
T 2fn4_A           40 PTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVL  119 (181)
T ss_dssp             TTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEE
T ss_pred             CCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence            4555  3345678888899999999999999999999999999999999999999999999999888443 335799999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                      |+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|+++.+.+.+..
T Consensus       120 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~  174 (181)
T 2fn4_A          120 VGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ  174 (181)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             EEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence            9999999887788889999999999999999999999999999999999987654

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.93  E-value=2.2e-25  Score=156.86  Aligned_cols=129  Identities=38%  Similarity=0.688  Sum_probs=109.2

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||+|   ..+.+.+++..+.+.+||++|++++...+..+++++|++++|||+++.++++.+..|+..+......++|+++
T Consensus        37 ~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil  116 (170)
T 1z08_A           37 TTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCI  116 (170)
T ss_dssp             CCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEE
T ss_pred             CccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence            5555   2345677888999999999999999999999999999999999999999999999999988776545799999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      |+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|+++.+.+.
T Consensus       117 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  168 (170)
T 1z08_A          117 VGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI  168 (170)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHh
Confidence            9999999877788889999999999999999999999999999999998875

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.93  E-value=4.7e-25  Score=159.06  Aligned_cols=130  Identities=38%  Similarity=0.757  Sum_probs=116.1

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||+|   ..+.+.+++..+.+.||||+|++.|...+..+++++|++|+|||+++.++++.+..|+..+......++|+++
T Consensus        57 ~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piil  136 (192)
T 2il1_A           57 STVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLL  136 (192)
T ss_dssp             CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred             CccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence            4555   3345667888899999999999999999999999999999999999999999999999988877666899999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHh-CCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAERE-GLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      |+||+|+.+.+.+..++++.++..+ +++++++||+++.|++++|+++.+.+.+
T Consensus       137 V~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~  190 (192)
T 2il1_A          137 VGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK  190 (192)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            9999999877788888999999885 7899999999999999999999998865

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.93  E-value=2.1e-25  Score=163.77  Aligned_cols=131  Identities=23%  Similarity=0.438  Sum_probs=114.1

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHH-HHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFEN-VSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piil   80 (174)
                      ||+|  ..+.+.+++..+.+.||||+|+++|..++..+++++|++|+|||++++++|.. +..|+..+..... ++|++|
T Consensus        58 ~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piil  136 (214)
T 3q3j_B           58 PTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLL  136 (214)
T ss_dssp             CCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT-TSEEEE
T ss_pred             CeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEE
Confidence            5666  33455678888999999999999999999999999999999999999999999 6899999987764 799999


Q ss_pred             EEeCCCCCCc------------cCCCHHHHHHHHHHhCC-cEEEEeccCCCC-HHHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHL------------RAVATEDAQSYAEREGL-SFIETSALEAIN-VEKAFQTILSEIYRII  135 (174)
Q Consensus        81 v~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~v~~~l~~~i~~~~  135 (174)
                      |+||+|+.+.            +.+..+++..++..+++ +++++||+++.| ++++|+++++.+....
T Consensus       137 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~  205 (214)
T 3q3j_B          137 IGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP  205 (214)
T ss_dssp             EEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred             EEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccC
Confidence            9999999753            67889999999999999 999999999998 9999999999887654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.93  E-value=9.9e-25  Score=153.27  Aligned_cols=128  Identities=44%  Similarity=0.747  Sum_probs=114.8

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||.|   ..+.+.+++..+.+.|||++|++.|...+..+++++|++++|||+++++++..+..|+..+......++|+++
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iil  116 (170)
T 1r2q_A           37 STIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIAL  116 (170)
T ss_dssp             CCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             CccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence            4555   2345677888999999999999999999999999999999999999999999999999998877656899999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      |+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|+++.+.+
T Consensus       117 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~  167 (170)
T 1r2q_A          117 SGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL  167 (170)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred             EEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            999999987777888899999999999999999999999999999998754

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.93  E-value=1.8e-24  Score=157.71  Aligned_cols=129  Identities=41%  Similarity=0.774  Sum_probs=116.0

Q ss_pred             eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      ..+.+++..+.+.||||+|++.|...+..+++.+|++|+|||+++..++..+..|+..+......++|+++|+||+|+. 
T Consensus        60 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-  138 (213)
T 3cph_A           60 KTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-  138 (213)
T ss_dssp             EEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS-
T ss_pred             EEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-
Confidence            4567788889999999999999999999999999999999999999999999999999887765579999999999994 


Q ss_pred             ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q 043745           90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKS  139 (174)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~  139 (174)
                      .+.+..++.+.++..++++++++||+++.|++++|+++.+.+.+......
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~  188 (213)
T 3cph_A          139 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNK  188 (213)
T ss_dssp             SCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHHHHHTTS
T ss_pred             ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhhhh
Confidence            46677888999999999999999999999999999999999988765443

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.93  E-value=1.6e-24  Score=155.45  Aligned_cols=127  Identities=18%  Similarity=0.350  Sum_probs=111.7

Q ss_pred             CCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEE
Q 043745            4 PRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMI   81 (174)
Q Consensus         4 pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv   81 (174)
                      ||.+ ..+.+.+++..+.+.||||+|++.|.     +++++|++++|||++++++|+.+..|+..+..... .++|+++|
T Consensus        51 ~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv  125 (184)
T 3ihw_A           51 PEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLV  125 (184)
T ss_dssp             TTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEE
T ss_pred             CCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            4544 44577889999999999999999887     78899999999999999999999999999877643 47899999


Q ss_pred             EeCCCCC--CccCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745           82 GNKTDLK--HLRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus        82 ~nK~Dl~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                      +||+|+.  ..+.+..+++++++..++ ++++++||+++.|++++|+++++.+.+..
T Consensus       126 ~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          126 GTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALR  182 (184)
T ss_dssp             EECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             EECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence            9999994  456788999999999997 89999999999999999999999987653

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.93  E-value=2.3e-24  Score=153.75  Aligned_cols=133  Identities=31%  Similarity=0.510  Sum_probs=118.3

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piil   80 (174)
                      ||++  ..+.+.+++..+.+.|||++|+++|..++..+++.+|++++|||+++.+++..+..|+..+..... .++|+++
T Consensus        49 ~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil  128 (187)
T 2a9k_A           49 PTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL  128 (187)
T ss_dssp             TTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEE
T ss_pred             CccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence            4444  334567888889999999999999999999999999999999999999999999999998877654 4799999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIIS  136 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~  136 (174)
                      |+||+|+.+.+.+..++++.++..++++++++||+++.|++++|+++.+.+.....
T Consensus       129 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  184 (187)
T 2a9k_A          129 VGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKM  184 (187)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             EEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHHhhc
Confidence            99999998777788899999999999999999999999999999999999887653

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.93  E-value=1.3e-24  Score=152.32  Aligned_cols=130  Identities=31%  Similarity=0.535  Sum_probs=113.1

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piil   80 (174)
                      ||.+  ....+.+++..+.+.|||++|++++..++..+++.+|++++|||+++.+++..+..|+..+..... .++|+++
T Consensus        35 ~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil  114 (168)
T 1u8z_A           35 PTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL  114 (168)
T ss_dssp             TTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEE
T ss_pred             CCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence            4555  334566889999999999999999999999999999999999999999999999999998877654 4799999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      |+||+|+.+.+++..++++.++...+++++++||+++.|++++|+++.+.+.+
T Consensus       115 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  167 (168)
T 1u8z_A          115 VGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             EEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence            99999998777888899999999999999999999999999999999988753

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.93  E-value=1.5e-24  Score=152.36  Aligned_cols=128  Identities=44%  Similarity=0.730  Sum_probs=114.5

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||+|   ..+.+.+++..+.+.+||++|++.|...+..+++++|++++|||+++++++..+..|+..+......++|+++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil  113 (170)
T 1ek0_A           34 PTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIAL  113 (170)
T ss_dssp             CCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             CccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence            5666   2446678889999999999999999999999999999999999999999999999999998877656899999


Q ss_pred             EEeCCCCCCc---cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHL---RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        81 v~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      |+||+|+.+.   +.+..++.+.++...+++++++||+++.|++++|+++.+.+
T Consensus       114 v~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  167 (170)
T 1ek0_A          114 VGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             EEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred             EEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            9999999754   67888899999999999999999999999999999988754

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.93  E-value=5.1e-25  Score=158.33  Aligned_cols=128  Identities=29%  Similarity=0.423  Sum_probs=110.6

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCeE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD---SNIVI   78 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~pi   78 (174)
                      ||+|  ..+.+.+++..+.+.||||+|++.|..+ ..+++++|++++|||++++++|+.+..|+..+.....   .++|+
T Consensus        52 ~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pi  130 (187)
T 3c5c_A           52 PNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPA  130 (187)
T ss_dssp             TTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_pred             CCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCE
Confidence            5666  3346678999999999999999998875 6799999999999999999999999999999876531   47999


Q ss_pred             EEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEec-cCCCCHHHHHHHHHHHHH
Q 043745           79 MMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSA-LEAINVEKAFQTILSEIY  132 (174)
Q Consensus        79 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~i~~v~~~l~~~i~  132 (174)
                      ++|+||+|+.+.+.+..+++++++..++++++++|| +++.|++++|+++++.+.
T Consensus       131 ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~  185 (187)
T 3c5c_A          131 LLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREAR  185 (187)
T ss_dssp             EEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred             EEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHHh
Confidence            999999999877888899999999999999999999 899999999999998875

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.93  E-value=1.7e-24  Score=156.85  Aligned_cols=132  Identities=30%  Similarity=0.502  Sum_probs=116.0

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piil   80 (174)
                      ||++  ..+.+.+++..+.+.||||+|+++|..++..+++++|++|+|||+++++++..+. .|+..+..... ++|+++
T Consensus        51 ~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~il  129 (201)
T 2q3h_A           51 PTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIIL  129 (201)
T ss_dssp             CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEE
T ss_pred             CcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEE
Confidence            5555  3345677888999999999999999999999999999999999999999999996 79998877654 799999


Q ss_pred             EEeCCCCCC------------ccCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q 043745           81 IGNKTDLKH------------LRAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIYRIIS  136 (174)
Q Consensus        81 v~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~  136 (174)
                      |+||+|+.+            .+.+..+++..++..++. +++++||+++.|++++|+++++.+.....
T Consensus       130 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~  198 (201)
T 2q3h_A          130 VGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSD  198 (201)
T ss_dssp             EEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             EEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence            999999975            256788899999999997 89999999999999999999999887653

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.93  E-value=2.9e-24  Score=151.02  Aligned_cols=128  Identities=43%  Similarity=0.733  Sum_probs=115.5

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||.|   ..+.+.+++..+.+.||||+|++.|...+..+++++|++++|||++++.++..+..|+..+........|+++
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iil  116 (170)
T 1z0j_A           37 PTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAI  116 (170)
T ss_dssp             CCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEE
T ss_pred             CceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEE
Confidence            5555   2345677888899999999999999999999999999999999999999999999999999877666899999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      |+||+|+.+.+++..++.+.++...+++++++||+++.|++++|+++.+.+
T Consensus       117 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i  167 (170)
T 1z0j_A          117 AGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI  167 (170)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             EEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence            999999987778888999999999999999999999999999999998765

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.93  E-value=2.7e-24  Score=152.71  Aligned_cols=130  Identities=19%  Similarity=0.320  Sum_probs=110.0

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc---CCCCeE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA---DSNIVI   78 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~pi   78 (174)
                      ||+|  ..+.+.+++..+.++||||+|+++     ..+++++|++|+|||++++++|+.+..|+..+....   ..++|+
T Consensus        37 ~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~pi  111 (178)
T 2iwr_A           37 KTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLAL  111 (178)
T ss_dssp             SCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEE
T ss_pred             CCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence            6666  455677899999999999999986     467889999999999999999999999766654432   247999


Q ss_pred             EEEEeCCCCC--CccCCCHHHHHHHHHHh-CCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q 043745           79 MMIGNKTDLK--HLRAVATEDAQSYAERE-GLSFIETSALEAINVEKAFQTILSEIYRIISKK  138 (174)
Q Consensus        79 ilv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~  138 (174)
                      ++|+||+|+.  ..+.+..++++.++..+ +++++++||+++.|++++|+++++.+.+.....
T Consensus       112 ilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~  174 (178)
T 2iwr_A          112 ALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQ  174 (178)
T ss_dssp             EEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHHHHhhh
Confidence            9999999994  45678889999999887 689999999999999999999999998875443

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.93  E-value=1e-24  Score=153.36  Aligned_cols=124  Identities=42%  Similarity=0.793  Sum_probs=112.2

Q ss_pred             eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      +.+.+++..+.+.|||++|++.+...+..+++++|++++|||+++.+++..+..|+..+......+.|+++|+||+|+. 
T Consensus        43 ~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-  121 (170)
T 1g16_A           43 KTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-  121 (170)
T ss_dssp             EEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-
T ss_pred             EEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC-
Confidence            4556678889999999999999999999999999999999999999999999999999887765679999999999994 


Q ss_pred             ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      .+.+..++.+.++..++++++++||+++.|++++|+++.+.+.++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~  166 (170)
T 1g16_A          122 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK  166 (170)
T ss_dssp             TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            356778889999999999999999999999999999999988754

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.93  E-value=8.7e-25  Score=157.58  Aligned_cols=130  Identities=43%  Similarity=0.726  Sum_probs=115.9

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||+|   ..+.+.+++..+.+.||||+|+++|...+..+++.+|++|+|||+++.++++.+..|+..+......++|+++
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piii  133 (192)
T 2fg5_A           54 PTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAI  133 (192)
T ss_dssp             CCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             CCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEE
Confidence            5666   2345567888899999999999999999999999999999999999999999999999999877656799999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      |+||+|+.+.+.+..+++++++..++++++++||+++.|++++|+++.+.+.+
T Consensus       134 v~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  186 (192)
T 2fg5_A          134 AGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPP  186 (192)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred             EEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence            99999998767788899999999999999999999999999999999887643

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.93  E-value=2.5e-24  Score=155.19  Aligned_cols=129  Identities=24%  Similarity=0.481  Sum_probs=114.3

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piil   80 (174)
                      ||+|  ....+.+++..+.+.||||+|++.|..++..+++++|++++|||+++++++..+ ..|+..+..... ++|+++
T Consensus        54 ~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~il  132 (194)
T 3reg_A           54 PTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVL  132 (194)
T ss_dssp             CCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TSEEEE
T ss_pred             CeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEE
Confidence            5555  334566889999999999999999999999999999999999999999999997 789888876653 799999


Q ss_pred             EEeCCCCCCc--cCCCHHHHHHHHHHhCCc-EEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHL--RAVATEDAQSYAEREGLS-FIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        81 v~nK~Dl~~~--~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      |+||+|+.+.  +.+..+++++++..+++. ++++||+++.|++++|+++++.+..
T Consensus       133 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  188 (194)
T 3reg_A          133 VGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFS  188 (194)
T ss_dssp             EEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHC
T ss_pred             EEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHh
Confidence            9999999753  678889999999999988 9999999999999999999998764

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.93  E-value=1.7e-24  Score=158.87  Aligned_cols=126  Identities=25%  Similarity=0.334  Sum_probs=111.0

Q ss_pred             eeEEEECCeEEEEEEEeCCCchh-hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCC
Q 043745            9 LCDFQVEGRTIKAQIWDTAGQER-YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMIGNKTD   86 (174)
Q Consensus         9 ~~~~~~~~~~~~l~l~D~~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~D   86 (174)
                      .+.+.+++..+.+.+|||+|++. +..+...+++.+|++|+|||+++.++|+.+..|+..+.... ..++|++||+||+|
T Consensus        77 ~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~D  156 (211)
T 2g3y_A           77 ERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD  156 (211)
T ss_dssp             EEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTT
T ss_pred             EEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChH
Confidence            45667899999999999999987 56677888899999999999999999999999988876542 24799999999999


Q ss_pred             CCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           87 LKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        87 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      |.+.+.+..++++.++..++++++++||++|.|++++|+++++.+...
T Consensus       157 L~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~~  204 (211)
T 2g3y_A          157 LVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR  204 (211)
T ss_dssp             CGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            987778888889999999999999999999999999999999988654

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.93  E-value=9.7e-25  Score=158.40  Aligned_cols=134  Identities=26%  Similarity=0.457  Sum_probs=105.8

Q ss_pred             CCcc---ceeEEEECCe--EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CC
Q 043745            4 PRLG---KLCDFQVEGR--TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD---SN   75 (174)
Q Consensus         4 pt~g---~~~~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~   75 (174)
                      ||+|   ..+.+.+++.  .+.+.||||+|++.|...+..+++++|++|+|||++++++++.+..|+..+.....   .+
T Consensus        53 ~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~  132 (208)
T 2yc2_C           53 MTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERP  132 (208)
T ss_dssp             --------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSC
T ss_pred             CccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccC
Confidence            4555   4445667776  88999999999999999999999999999999999999999999999999987765   57


Q ss_pred             CeEEEEEeCCCCCC-ccCCCHHHHHHHHHHhCCcEEEEeccC-CCCHHHHHHHHHHHHHHHHhh
Q 043745           76 IVIMMIGNKTDLKH-LRAVATEDAQSYAEREGLSFIETSALE-AINVEKAFQTILSEIYRIISK  137 (174)
Q Consensus        76 ~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~~i~~v~~~l~~~i~~~~~~  137 (174)
                      +|+++|+||+|+.+ .+.+..++++.++..++++++++||++ +.|++++|+++.+.+.+...+
T Consensus       133 ~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~~~  196 (208)
T 2yc2_C          133 LRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYED  196 (208)
T ss_dssp             CEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHHHHHh
Confidence            99999999999987 678888999999999999999999999 999999999999988876543

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.93  E-value=2.6e-24  Score=155.01  Aligned_cols=128  Identities=28%  Similarity=0.508  Sum_probs=113.7

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piil   80 (174)
                      ||+|  ..+.+.+++..+.+.|||++|+++|..++..+++++|++|+|||++++++|..+. .|+..+..... ++|+++
T Consensus        49 ~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piil  127 (194)
T 2atx_A           49 PTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLL  127 (194)
T ss_dssp             CSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEE
T ss_pred             CcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEE
Confidence            5666  3446677888899999999999999999999999999999999999999999997 89998887654 799999


Q ss_pred             EEeCCCCCCc------------cCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHL------------RAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        81 v~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      |+||+|+.+.            +.+..+++..++..++. +++++||+++.|++++|+++++.++
T Consensus       128 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          128 IGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             EEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            9999999753            46788999999999997 8999999999999999999998875

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.93  E-value=4.5e-24  Score=153.03  Aligned_cols=121  Identities=40%  Similarity=0.725  Sum_probs=111.7

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCCCccCCCHH
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLKHLRAVATE   96 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~   96 (174)
                      .+.+.||||+|++.|...+..+++++|++|+|||+++..++..+..|+..+..... .++|+++|+||+|+.+.+.+..+
T Consensus        69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~  148 (195)
T 3bc1_A           69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEE  148 (195)
T ss_dssp             EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHH
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHH
Confidence            78999999999999999999999999999999999999999999999999877654 57999999999999877788889


Q ss_pred             HHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q 043745           97 DAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK  138 (174)
Q Consensus        97 ~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~  138 (174)
                      ++++++..++++++++||+++.|++++|+++.+.+.+...+.
T Consensus       149 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~  190 (195)
T 3bc1_A          149 EARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMERS  190 (195)
T ss_dssp             HHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999999999998876544

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.93  E-value=1.3e-24  Score=154.06  Aligned_cols=125  Identities=31%  Similarity=0.525  Sum_probs=109.6

Q ss_pred             eeEEEECC-eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCe-EEEEEeC
Q 043745            9 LCDFQVEG-RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD--SNIV-IMMIGNK   84 (174)
Q Consensus         9 ~~~~~~~~-~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p-iilv~nK   84 (174)
                      .+.+.+++ ..+.+.||||+|++.|...+..+++++|++++|||++++++++.+..|+..+.....  ...| +++|+||
T Consensus        45 ~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK  124 (178)
T 2hxs_A           45 LRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNK  124 (178)
T ss_dssp             EEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEEC
T ss_pred             EEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEc
Confidence            34566665 678999999999999999999999999999999999999999999999988876432  1344 8999999


Q ss_pred             CCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           85 TDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        85 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      +|+.+.+.+..++++.++..++++++++||+++.|++++|+++.+.+.+
T Consensus       125 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  173 (178)
T 2hxs_A          125 IDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILG  173 (178)
T ss_dssp             GGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTT
T ss_pred             cccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            9998777888899999999999999999999999999999999988754

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.93  E-value=9.9e-25  Score=159.92  Aligned_cols=122  Identities=41%  Similarity=0.709  Sum_probs=111.0

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCCCccCCCHH
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLKHLRAVATE   96 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~   96 (174)
                      .+.+.||||+|++.|...+..+++++|++|||||+++.+++..+..|+..+..... .++|+++|+||+|+.+.+.+..+
T Consensus        83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~  162 (217)
T 2f7s_A           83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNER  162 (217)
T ss_dssp             EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHH
T ss_pred             eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHH
Confidence            78899999999999999999999999999999999999999999999888765543 57999999999999877788889


Q ss_pred             HHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q 043745           97 DAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKS  139 (174)
Q Consensus        97 ~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~  139 (174)
                      ++++++..++++++++||+++.|++++|+++.+.+.+......
T Consensus       163 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~~~  205 (217)
T 2f7s_A          163 QARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQCV  205 (217)
T ss_dssp             HHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHHHHhhcCC
Confidence            9999999999999999999999999999999999988765543

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.93  E-value=1.3e-24  Score=157.54  Aligned_cols=124  Identities=36%  Similarity=0.613  Sum_probs=110.4

Q ss_pred             eeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745            9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus         9 ~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      .+.+.+++..+.+.||||+|++.|..++..+++.+|++|+|||+++.++++.+..|+..+......++|+++|+||+|+.
T Consensus        67 ~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~  146 (199)
T 2p5s_A           67 MKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR  146 (199)
T ss_dssp             EEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred             EEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence            34667888899999999999999999999999999999999999999999999999998877665579999999999996


Q ss_pred             ------CccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           89 ------HLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        89 ------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                            ..+.+..++++.++...+++++++||+++.|++++|+++++.+.
T Consensus       147 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~  196 (199)
T 2p5s_A          147 DTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK  196 (199)
T ss_dssp             HHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             cccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence                  34677888999999999999999999999999999999998774

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.93  E-value=6.7e-25  Score=158.35  Aligned_cols=128  Identities=27%  Similarity=0.351  Sum_probs=110.6

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCeEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD--SNIVIM   79 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~pii   79 (174)
                      ||++  ..+.+.+++..+.+.||||+|+++|..++..++..+|++++|||++++++++.+..|+..+.....  .++|++
T Consensus        39 ~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~pii  118 (199)
T 2gf0_A           39 PTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVM  118 (199)
T ss_dssp             CCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEE
T ss_pred             CccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence            4555  233456788889999999999999999999999999999999999999999999888877766442  368999


Q ss_pred             EEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           80 MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        80 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      +|+||+|+.+ +.+..++...++..++++++++||+++.|++++|+++++.+.
T Consensus       119 lv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  170 (199)
T 2gf0_A          119 LVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLET  170 (199)
T ss_dssp             EEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCS
T ss_pred             EEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence            9999999976 567788889999999999999999999999999999988654

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.92  E-value=2.4e-24  Score=151.03  Aligned_cols=128  Identities=28%  Similarity=0.488  Sum_probs=112.6

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piil   80 (174)
                      ||++  ..+.+.+++..+.+.|||++|++.|..++..+++++|++++|||++++++++.+..|+..+.... ..+.|+++
T Consensus        34 ~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil  113 (167)
T 1c1y_A           34 PTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMIL  113 (167)
T ss_dssp             CCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEE
T ss_pred             CCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEE
Confidence            4444  23345678888999999999999999999999999999999999999999999999998887653 25799999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHh-CCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAERE-GLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      |+||+|+.+.+.+..++++.++..+ +++++++||+++.|++++|+++.+.+
T Consensus       114 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  165 (167)
T 1c1y_A          114 VGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence            9999999887788889999999988 79999999999999999999998876

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.92  E-value=2e-24  Score=151.56  Aligned_cols=129  Identities=33%  Similarity=0.571  Sum_probs=115.6

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||+|   ..+.+.+++..+.+.||||+|++.|..++..+++++|++++|||+++.++++.+..|+..+.... .+.|+++
T Consensus        36 ~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piil  114 (168)
T 1z2a_A           36 KTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTAL  114 (168)
T ss_dssp             CCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEE
T ss_pred             CceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEE
Confidence            5555   34466778889999999999999999999999999999999999999999999999999887665 4789999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      |+||+|+.+.+.+..++++.++..++++++++||+++.|++++|+++.+.+.+
T Consensus       115 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  167 (168)
T 1z2a_A          115 VQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ  167 (168)
T ss_dssp             EEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred             EEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence            99999998777788899999999999999999999999999999999988753

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.92  E-value=2.3e-24  Score=152.70  Aligned_cols=129  Identities=37%  Similarity=0.689  Sum_probs=115.5

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||+|   ..+.+.+++..+.+.||||+|++.|...+..+++++|++++|||+++++++..+..|+..+......++|+++
T Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil  124 (179)
T 2y8e_A           45 ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIML  124 (179)
T ss_dssp             CCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEE
T ss_pred             CceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence            5555   3445668888899999999999999999999999999999999999999999999999998776556799999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      |+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|+++.+.+.
T Consensus       125 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  176 (179)
T 2y8e_A          125 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP  176 (179)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred             EEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence            9999999877788889999999999999999999999999999999987653

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=5.6e-24  Score=152.93  Aligned_cols=130  Identities=41%  Similarity=0.736  Sum_probs=114.8

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIM   79 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~pii   79 (174)
                      ||+|   ..+.+.+++..+.+.||||+|++.|..++..+++++|++|||||+++++++..+..|+..+..... .++|++
T Consensus        46 ~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i  125 (195)
T 1x3s_A           46 ATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNM  125 (195)
T ss_dssp             CCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEE
T ss_pred             CccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEE
Confidence            4555   234567888999999999999999999999999999999999999999999999999999876543 479999


Q ss_pred             EEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           80 MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        80 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      +|+||+|+.+ +.+..++...++...+++++++||+++.|++++|+++.+.+.+.
T Consensus       126 lv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  179 (195)
T 1x3s_A          126 LVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT  179 (195)
T ss_dssp             EEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             EEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhh
Confidence            9999999954 56778889999999999999999999999999999999988753

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.92  E-value=3.7e-24  Score=149.78  Aligned_cols=124  Identities=25%  Similarity=0.474  Sum_probs=112.6

Q ss_pred             eeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCC
Q 043745            9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDL   87 (174)
Q Consensus         9 ~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl   87 (174)
                      .+.+.+++..+.+.|||++|++.|..++..+++++|++++|||+++.++++.+..|+..+..... .+.|+++|+||+|+
T Consensus        41 ~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  120 (167)
T 1kao_A           41 RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL  120 (167)
T ss_dssp             EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGG
T ss_pred             EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcc
Confidence            44667888899999999999999999999999999999999999999999999999988876543 57999999999999


Q ss_pred             CCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           88 KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      .+.+++..++.+.++..++++++++||+++.|++++|+++.+.+.
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  165 (167)
T 1kao_A          121 ESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             GGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             cccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHHh
Confidence            877788889999999999999999999999999999999998764

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.92  E-value=4.7e-24  Score=153.16  Aligned_cols=129  Identities=34%  Similarity=0.653  Sum_probs=112.5

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhh-hhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYR-AITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVI   78 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~-~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi   78 (174)
                      ||+|   ..+.+.+++..+.+.||||+|+++|. .++..+++++|++|+|||+++.+++..+..|+..+.... ..+.|+
T Consensus        51 ~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~pi  130 (189)
T 1z06_A           51 ATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPR  130 (189)
T ss_dssp             CCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCE
T ss_pred             CCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence            4555   34456788888999999999999998 899999999999999999999999999999999987765 357999


Q ss_pred             EEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCC---CCHHHHHHHHHHHHH
Q 043745           79 MMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEA---INVEKAFQTILSEIY  132 (174)
Q Consensus        79 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~i~~v~~~l~~~i~  132 (174)
                      ++|+||+|+.+.+++..++.+.++...+++++++||+++   .|++++|+++++.+.
T Consensus       131 ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~  187 (189)
T 1z06_A          131 ILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK  187 (189)
T ss_dssp             EEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred             EEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence            999999999877788889999999999999999999999   999999999988764

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.92  E-value=8.1e-25  Score=158.81  Aligned_cols=132  Identities=27%  Similarity=0.435  Sum_probs=111.6

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piil   80 (174)
                      ||++  ..+.+.+++..+.+.||||+|++.|..++..+++++|++++|||+++.++++.+..|+..+..... .++|+++
T Consensus        55 ~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil  134 (201)
T 3oes_A           55 PTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVL  134 (201)
T ss_dssp             CCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEE
T ss_pred             CccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence            4444  233445677788999999999999999999999999999999999999999999999999876533 4789999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                      |+||+|+.+.+.+..++++.++..++++++++||+++.|++++|+++++.+.+..
T Consensus       135 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~  189 (201)
T 3oes_A          135 VGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVE  189 (201)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC-
T ss_pred             EEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence            9999999887889999999999999999999999999999999999999887654

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=7.7e-24  Score=152.96  Aligned_cols=131  Identities=31%  Similarity=0.435  Sum_probs=115.9

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piil   80 (174)
                      ||++  ..+.+.+++..+.+.|||++|++. ...+..+++.+|++++|||++++++++.+..|+..+..... .++|+++
T Consensus        59 ~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piil  137 (196)
T 2atv_A           59 PTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLIL  137 (196)
T ss_dssp             TTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEE
T ss_pred             CCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEE
Confidence            4555  334567889999999999999998 78899999999999999999999999999999988876543 5799999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCC-CHHHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAI-NVEKAFQTILSEIYRII  135 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~v~~~l~~~i~~~~  135 (174)
                      |+||+|+.+.+.+..++++.++..++++++++||+++. |++++|+++++.+.+..
T Consensus       138 v~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~~  193 (196)
T 2atv_A          138 VGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRR  193 (196)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             EEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHhhc
Confidence            99999998877888999999999999999999999999 99999999999987653

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.92  E-value=2.4e-24  Score=154.19  Aligned_cols=129  Identities=24%  Similarity=0.518  Sum_probs=112.8

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piil   80 (174)
                      ||++  ..+.+.+++..+.+.|||++|++.|..++..+++++|++|+|||++++++|+.+ ..|+..+..... +.|+++
T Consensus        38 ~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piil  116 (184)
T 1m7b_A           38 PTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLL  116 (184)
T ss_dssp             CCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEE
T ss_pred             CccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEE
Confidence            5666  334566788899999999999999999999999999999999999999999998 789988877654 799999


Q ss_pred             EEeCCCCCCc------------cCCCHHHHHHHHHHhC-CcEEEEecc-CCCCHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHL------------RAVATEDAQSYAEREG-LSFIETSAL-EAINVEKAFQTILSEIYR  133 (174)
Q Consensus        81 v~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~-~~~~i~~v~~~l~~~i~~  133 (174)
                      |+||+|+.+.            +.+..++++.++..++ ++++++||+ ++.|++++|+.+++.+++
T Consensus       117 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          117 VGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             EEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             EEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence            9999999742            5678889999999988 799999999 689999999999988763

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.92  E-value=6.8e-25  Score=157.82  Aligned_cols=122  Identities=22%  Similarity=0.304  Sum_probs=107.8

Q ss_pred             EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCC------ChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 043745           13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVT------KPTTFENVSRWLKELRDHADSNIVIMMIGNKTD   86 (174)
Q Consensus        13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~------~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D   86 (174)
                      .+++..+.++||||+|+++|..++..+++++|++|||||++      +.++|..+..|+..+... ..++|+++|+||+|
T Consensus        68 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~-~~~~piilv~NK~D  146 (198)
T 3t1o_A           68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLT-LDDVPIVIQVNKRD  146 (198)
T ss_dssp             CSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCC-TTSSCEEEEEECTT
T ss_pred             cccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccc-cCCCCEEEEEEchh
Confidence            45677889999999999999999999999999999999999      567888888898887432 25799999999999


Q ss_pred             CCCccCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q 043745           87 LKHLRAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIYRIISK  137 (174)
Q Consensus        87 l~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~  137 (174)
                      +.+  .+..+++++++...++ +++++||+++.|++++|+++++.+.+...+
T Consensus       147 l~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~  196 (198)
T 3t1o_A          147 LPD--ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVAG  196 (198)
T ss_dssp             STT--CCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred             ccc--ccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence            976  3778899999999998 999999999999999999999999887643

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.92  E-value=1.8e-23  Score=148.10  Aligned_cols=129  Identities=37%  Similarity=0.667  Sum_probs=112.1

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC----CCC
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD----SNI   76 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~   76 (174)
                      ||+|   ..+.+.+++..+.+.|||++|++.|...+..+++++|++++|||+++.+++..+..|+..+.....    .++
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  117 (177)
T 1wms_A           38 HTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESF  117 (177)
T ss_dssp             -CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTS
T ss_pred             CceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCC
Confidence            4555   234566788889999999999999999999999999999999999999999999999998876543    578


Q ss_pred             eEEEEEeCCCCCCccCCCHHHHHHHHH-HhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           77 VIMMIGNKTDLKHLRAVATEDAQSYAE-REGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        77 piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      |+++|+||+|+. .+.+..++++.++. ..+++++++||+++.|++++|+++++.+.+
T Consensus       118 p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  174 (177)
T 1wms_A          118 PFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA  174 (177)
T ss_dssp             CEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             cEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            999999999997 46677888889888 557899999999999999999999998764

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.92  E-value=2.1e-26  Score=166.92  Aligned_cols=123  Identities=48%  Similarity=0.832  Sum_probs=102.2

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      .+.+++..+.+.||||+|++.|..++..+++++|++|+|||+++.++++.+..|+..+......++|+++|+||+|+.+.
T Consensus        74 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~  153 (199)
T 3l0i_B           74 TIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK  153 (199)
T ss_dssp             EEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--
T ss_pred             EEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCcc
Confidence            55678888999999999999999999999999999999999999999999999999987766668999999999999877


Q ss_pred             cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      +.+..++.+.++..++++++++||+++.|++++|+++++.+.+
T Consensus       154 ~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~~  196 (199)
T 3l0i_B          154 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK  196 (199)
T ss_dssp             CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTTT
T ss_pred             ccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            7777778889999999999999999999999999999877644

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.92  E-value=1.5e-24  Score=159.10  Aligned_cols=122  Identities=30%  Similarity=0.485  Sum_probs=107.7

Q ss_pred             CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCH
Q 043745           16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVAT   95 (174)
Q Consensus        16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~   95 (174)
                      +..+.+.||||+|++.+..++..++.++|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+.+.+.+..
T Consensus        58 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~  137 (218)
T 4djt_A           58 GNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISK  137 (218)
T ss_dssp             SCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCH
T ss_pred             CcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH
Confidence            44488999999999999999999999999999999999999999999999998877666799999999999988778888


Q ss_pred             HHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q 043745           96 EDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISK  137 (174)
Q Consensus        96 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~  137 (174)
                      ++...++...+++++++||+++.|++++|+++.+.+......
T Consensus       138 ~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~  179 (218)
T 4djt_A          138 KLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDL  179 (218)
T ss_dssp             HHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCCTTC
T ss_pred             HHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhccccc
Confidence            999999999999999999999999999999999988765433

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.92  E-value=3.5e-24  Score=156.37  Aligned_cols=129  Identities=24%  Similarity=0.524  Sum_probs=112.7

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piil   80 (174)
                      ||++  ..+.+.+++..+.+.||||+|++.|..++..+++++|++|+|||++++++|+.+ ..|+..+..... +.|+++
T Consensus        59 ~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~~piil  137 (205)
T 1gwn_A           59 PTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLL  137 (205)
T ss_dssp             CCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEE
T ss_pred             CccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEE
Confidence            5665  334556788889999999999999999999999999999999999999999998 789998877654 799999


Q ss_pred             EEeCCCCCC------------ccCCCHHHHHHHHHHhC-CcEEEEecc-CCCCHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKH------------LRAVATEDAQSYAEREG-LSFIETSAL-EAINVEKAFQTILSEIYR  133 (174)
Q Consensus        81 v~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~-~~~~i~~v~~~l~~~i~~  133 (174)
                      |+||+|+.+            .+.+..++++.++..++ ++++++||+ ++.|++++|+.+++.++.
T Consensus       138 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          138 VGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             EEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence            999999974            25678889999999988 799999999 689999999999998874

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.92  E-value=1.8e-23  Score=151.70  Aligned_cols=129  Identities=27%  Similarity=0.553  Sum_probs=113.3

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piil   80 (174)
                      ||++  ....+.+++..+.+.||||+|+++|..++..+++++|++++|||+++++++..+ ..|+..+..... +.|+++
T Consensus        56 ~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piil  134 (201)
T 2gco_A           56 PTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIIL  134 (201)
T ss_dssp             CSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEE
T ss_pred             CcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEE
Confidence            5555  334567889999999999999999999999999999999999999999999999 688888877653 789999


Q ss_pred             EEeCCCCCCc------------cCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHL------------RAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        81 v~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      |+||+|+.+.            +.+..+++..++..++. +++++||+++.|++++|+++.+.+++
T Consensus       135 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          135 VGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             EEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence            9999999764            45778889999999997 89999999999999999999988763

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.92  E-value=1.3e-23  Score=149.87  Aligned_cols=128  Identities=27%  Similarity=0.553  Sum_probs=112.5

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piil   80 (174)
                      ||++  ..+.+.+++..+.+.||||+|+++|..++..+++++|++++|||+++++++..+. .|+..+..... +.|+++
T Consensus        36 ~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piil  114 (186)
T 1mh1_A           36 PTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIIL  114 (186)
T ss_dssp             CCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEE
T ss_pred             CcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEE
Confidence            4555  3345678899999999999999999999999999999999999999999999997 79888877654 799999


Q ss_pred             EEeCCCCCCc------------cCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHL------------RAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        81 v~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      |+||+|+.+.            +.+..+++..++..++. +++++||+++.|++++|+++.+.+.
T Consensus       115 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  179 (186)
T 1mh1_A          115 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL  179 (186)
T ss_dssp             EEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             EeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHh
Confidence            9999999653            46778889999999997 9999999999999999999998875

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.91  E-value=7.1e-24  Score=155.45  Aligned_cols=130  Identities=32%  Similarity=0.563  Sum_probs=99.5

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piil   80 (174)
                      ||++  ..+.+.+++..+.+.||||+|++.|..++..+++++|++++|||++++++|+.+. .|+..+..... ++|+++
T Consensus        65 ~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piil  143 (214)
T 2j1l_A           65 PTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIV  143 (214)
T ss_dssp             CCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SCCEEE
T ss_pred             CccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEE
Confidence            4555  3445678899999999999999999999999999999999999999999999996 79988877653 789999


Q ss_pred             EEeCCCCCCc------------cCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHL------------RAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        81 v~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      |+||+|+...            +.+..++++.++..++. +++++||+++.|++++|+++++.+.+.
T Consensus       144 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~  210 (214)
T 2j1l_A          144 VGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSS  210 (214)
T ss_dssp             EEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred             EEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence            9999999764            26778889999999997 999999999999999999999998754

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.91  E-value=4.8e-23  Score=148.60  Aligned_cols=114  Identities=40%  Similarity=0.718  Sum_probs=104.7

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHH
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDA   98 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~   98 (174)
                      +.+.||||+|++.|...+..+++.+|++|+|||++++.++..+..|+..+....  +.|+++|+||+| ...+.+..+++
T Consensus        93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D-~~~~~~~~~~~  169 (208)
T 3clv_A           93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID-KNKFQVDILEV  169 (208)
T ss_dssp             EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-CC-CCSCHHHH
T ss_pred             eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-cccccCCHHHH
Confidence            889999999999999999999999999999999999999999999999987765  389999999999 44467888999


Q ss_pred             HHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745           99 QSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus        99 ~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                      +.++...+++++++||+++.|++++|+++.+.+.+..
T Consensus       170 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  206 (208)
T 3clv_A          170 QKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI  206 (208)
T ss_dssp             HHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999988764

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.91  E-value=5.2e-23  Score=147.61  Aligned_cols=126  Identities=33%  Similarity=0.542  Sum_probs=102.8

Q ss_pred             eeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCC
Q 043745            9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDL   87 (174)
Q Consensus         9 ~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl   87 (174)
                      .+.+.+++..+.+.|||++|+++|..++..+++.+|++++|||+++..++..+..|+..+..... .++|+++|+||+|+
T Consensus        59 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl  138 (190)
T 3con_A           59 RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL  138 (190)
T ss_dssp             EEEEEETTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTC
T ss_pred             EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcC
Confidence            34567788899999999999999999999999999999999999999999999999988876543 47899999999999


Q ss_pred             CCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745           88 KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                      .+ +.+..+++++++..++++++++||+++.|++++|+++.+.+.+..
T Consensus       139 ~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  185 (190)
T 3con_A          139 PT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYR  185 (190)
T ss_dssp             SC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             Cc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            76 567788999999999999999999999999999999999887653

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.91  E-value=8.2e-23  Score=142.59  Aligned_cols=128  Identities=34%  Similarity=0.570  Sum_probs=113.4

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piil   80 (174)
                      ||++  ..+.+.+++..+.+.+||++|+++|...+..++..+|++++|||+++..++..+..|+..+..... .+.|+++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~ii  113 (166)
T 2ce2_X           34 PTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL  113 (166)
T ss_dssp             TTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEE
T ss_pred             CccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence            4444  344667889899999999999999999999999999999999999999999999999998876653 4799999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      |+||+|+.+ +.+..++.++++..++++++++||+++.|++++|+++.+.+.
T Consensus       114 v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  164 (166)
T 2ce2_X          114 VGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR  164 (166)
T ss_dssp             EEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence            999999976 567788899999999999999999999999999999998874

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.91  E-value=4.3e-23  Score=149.01  Aligned_cols=127  Identities=25%  Similarity=0.333  Sum_probs=109.1

Q ss_pred             eeEEEECCeEEEEEEEeCCCchh-hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCC
Q 043745            9 LCDFQVEGRTIKAQIWDTAGQER-YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMIGNKTD   86 (174)
Q Consensus         9 ~~~~~~~~~~~~l~l~D~~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~D   86 (174)
                      .+.+.+++..+.+.+|||+|++. +..++..+++.+|++++|||+++.++|+.+..|+..+.... ..++|+++|+||+|
T Consensus        46 ~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~D  125 (192)
T 2cjw_A           46 ERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD  125 (192)
T ss_dssp             EEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTT
T ss_pred             EEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechh
Confidence            34567899999999999999876 56678888999999999999999999999999988876643 24789999999999


Q ss_pred             CCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745           87 LKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus        87 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                      +...+.+..++++.++..++++++++||++|.|++++|+++++.+....
T Consensus       126 l~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~~~  174 (192)
T 2cjw_A          126 LVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRR  174 (192)
T ss_dssp             CGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             hhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHHHhhc
Confidence            9876778888888999999999999999999999999999999886543

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.91  E-value=1.9e-23  Score=148.38  Aligned_cols=125  Identities=37%  Similarity=0.628  Sum_probs=98.7

Q ss_pred             EEEEC-CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC----CCCeEEEEEeCC
Q 043745           11 DFQVE-GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD----SNIVIMMIGNKT   85 (174)
Q Consensus        11 ~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~   85 (174)
                      .+.++ +..+.+.+||++|++.|...+..+++++|++|+|||+++.++++.+..|+..+.....    .++|+++|+||+
T Consensus        49 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~  128 (182)
T 1ky3_A           49 EVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI  128 (182)
T ss_dssp             EECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECT
T ss_pred             EEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECC
Confidence            44455 5568899999999999999999999999999999999999999999999998876543    578999999999


Q ss_pred             CCCC-ccCCCHHHHHHHHH-HhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745           86 DLKH-LRAVATEDAQSYAE-REGLSFIETSALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus        86 Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                      |+.. .+.+..++++.++. ..+++++++||+++.|++++|+++.+.+.+..
T Consensus       129 Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  180 (182)
T 1ky3_A          129 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN  180 (182)
T ss_dssp             TSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence            9953 35677888888888 45689999999999999999999999987653

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=2.2e-23  Score=146.56  Aligned_cols=128  Identities=26%  Similarity=0.339  Sum_probs=111.2

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCeEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD--SNIVIM   79 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~pii   79 (174)
                      ||++  ..+.+.+++..+.+.||||+|+++|..++..+++.+|++++|||++++++++.+..|+..+.....  .+.|++
T Consensus        34 ~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii  113 (172)
T 2erx_A           34 PTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIM  113 (172)
T ss_dssp             CCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEE
T ss_pred             CCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEE
Confidence            4444  233456788889999999999999999999999999999999999999999999999888766542  468999


Q ss_pred             EEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           80 MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        80 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      +|+||+|+.+.+.+...+.+.++...+++++++||+++.|++++|+++.+.+
T Consensus       114 ~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  165 (172)
T 2erx_A          114 LVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE  165 (172)
T ss_dssp             EEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred             EEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHH
Confidence            9999999987778888889999999999999999999999999999998754

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.91  E-value=3e-24  Score=152.76  Aligned_cols=120  Identities=31%  Similarity=0.574  Sum_probs=100.0

Q ss_pred             EEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        12 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      +.+++..+.+.||||+|+++|...+..+++++|++++|||++++++++.+. .|+..+..... ++|+++|+||+|+.+.
T Consensus        49 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~  127 (182)
T 3bwd_D           49 VVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDD  127 (182)
T ss_dssp             CC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTC
T ss_pred             EEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcC
Confidence            345677788899999999999999999999999999999999999999997 79998877654 7999999999999764


Q ss_pred             cC----------CCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           91 RA----------VATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        91 ~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      +.          +..+++.+++..++. +++++||+++.|++++|+++++.++
T Consensus       128 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          128 KQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             HHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             cccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            43          477888999999996 9999999999999999999988764

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=7.2e-23  Score=149.19  Aligned_cols=129  Identities=29%  Similarity=0.554  Sum_probs=110.5

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piil   80 (174)
                      ||++  ....+.+++..+.+.||||+|+++|...+..+++++|++|+|||+++.+++..+ ..|+..+..... ++|+++
T Consensus        56 ~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piil  134 (207)
T 2fv8_A           56 PTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIIL  134 (207)
T ss_dssp             ---CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEE
T ss_pred             CcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEE
Confidence            4555  223456788889999999999999999999999999999999999999999999 688888877653 789999


Q ss_pred             EEeCCCCCCc------------cCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHL------------RAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        81 v~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      |+||+|+.+.            +.+..+++..++...+. +++++||+++.|++++|+++.+.++.
T Consensus       135 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~  200 (207)
T 2fv8_A          135 VANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ  200 (207)
T ss_dssp             EEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred             EEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            9999999654            45778888999999987 89999999999999999999998764

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.90  E-value=2e-23  Score=153.48  Aligned_cols=129  Identities=30%  Similarity=0.543  Sum_probs=111.4

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||.|   ....+.+++..+.+.||||+|++.|..++..+++++|++++|||+++..++..+..|+..+..... ++|+++
T Consensus        46 ~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~il  124 (221)
T 3gj0_A           46 ATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVL  124 (221)
T ss_dssp             TTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEE
T ss_pred             CccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEE
Confidence            4555   333556788899999999999999999999999999999999999999999999999999987754 799999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                      |+||+|+.+...  ..+...++...+++++++||+++.|++++|+++.+.+....
T Consensus       125 v~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~  177 (221)
T 3gj0_A          125 CGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP  177 (221)
T ss_dssp             EEECTTSSSCSS--CGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTCT
T ss_pred             EEECCccccccc--cHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence            999999976433  23666788888999999999999999999999999886643

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.90  E-value=2.5e-23  Score=151.47  Aligned_cols=127  Identities=27%  Similarity=0.547  Sum_probs=109.1

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piil   80 (174)
                      ||++  ....+.+++..+.+.||||+|+++|...+..+++++|++++|||+++++++..+. .|+..+.... .+.|+++
T Consensus        61 ~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piil  139 (204)
T 4gzl_A           61 PTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIIL  139 (204)
T ss_dssp             CCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEE
T ss_pred             CeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEE
Confidence            4444  3335567888899999999999999999999999999999999999999999996 8988887765 4799999


Q ss_pred             EEeCCCCCCcc------------CCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLR------------AVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        81 v~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      |+||+|+.+.+            .+..+++..++..++. +++++||+++.|++++|+++.+.+
T Consensus       140 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          140 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             EEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred             EEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            99999997543            3778889999999986 599999999999999999998754

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.90  E-value=7.7e-22  Score=142.90  Aligned_cols=140  Identities=68%  Similarity=1.095  Sum_probs=121.2

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||+|   ....+.+++..+.+.+||++|++.|...+..+++.++++++|||+++..++..+..|+..+........|+++
T Consensus        36 ~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~  115 (199)
T 2f9l_A           36 STIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIML  115 (199)
T ss_dssp             CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred             CccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence            5555   3456788999999999999999999999999999999999999999999999998998887665445789999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSG  143 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~~~~~  143 (174)
                      ++||.|+.+.+.+..++++.++...++.++++||+++.|++++|+++.+.+.+..........
T Consensus       116 v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~~~~~~~~~~~  178 (199)
T 2f9l_A          116 VGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADR  178 (199)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHTSCCC--
T ss_pred             EEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHhhccCCch
Confidence            999999987777888889999999999999999999999999999999999887655544333

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.90  E-value=2.8e-23  Score=149.83  Aligned_cols=130  Identities=15%  Similarity=0.268  Sum_probs=102.6

Q ss_pred             CCCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--------C
Q 043745            3 QPRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD--------S   74 (174)
Q Consensus         3 ~pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--------~   74 (174)
                      .||+|... ..+++..+.+.||||+|++.|..++..+++++|++|+|||+++.++|..+..|+..+.....        .
T Consensus        48 ~~t~~~~~-~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  126 (199)
T 4bas_A           48 TATVGYNV-ETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGG  126 (199)
T ss_dssp             CCCSSEEE-EEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSC
T ss_pred             ccccceeE-EEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccC
Confidence            35666222 23445567899999999999999999999999999999999999999999999888765421        2


Q ss_pred             CCeEEEEEeCCCCCCccCCCHHHHHH------HHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745           75 NIVIMMIGNKTDLKHLRAVATEDAQS------YAEREGLSFIETSALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus        75 ~~piilv~nK~Dl~~~~~~~~~~~~~------~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                      ++|+++|+||+|+.....  .++...      ++...+++++++||+++.|++++|++|++.+.+..
T Consensus       127 ~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~  191 (199)
T 4bas_A          127 RVPFLFFANKMDAAGAKT--AAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQS  191 (199)
T ss_dssp             BCCEEEEEECTTSTTCCC--HHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEEECcCCCCCCC--HHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence            689999999999976422  222211      11445678999999999999999999999988764

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.89  E-value=9e-23  Score=147.95  Aligned_cols=123  Identities=19%  Similarity=0.275  Sum_probs=98.8

Q ss_pred             CCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEE
Q 043745            4 PRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMI   81 (174)
Q Consensus         4 pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv   81 (174)
                      ||+| ....+.+++  +.+.+|||+|++.|+.++..+++++|++++|||++++++|..+..|+..+.... ..++|+++|
T Consensus        55 ~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv  132 (198)
T 1f6b_A           55 PTLHPTSEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILIL  132 (198)
T ss_dssp             CCCCCSCEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEE
T ss_pred             CCCCceeEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEE
Confidence            5555 334566676  789999999999999999999999999999999999999999999998876542 247999999


Q ss_pred             EeCCCCCCccCCCHHHHHHHHHH-----------------hCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745           82 GNKTDLKHLRAVATEDAQSYAER-----------------EGLSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        82 ~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      +||+|+.+  .+..+++++++..                 .+++++++||++|.|++++|+++.+.
T Consensus       133 ~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          133 GNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             EECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             EECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence            99999975  5667777777653                 23579999999999999999998764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.89  E-value=1.5e-23  Score=146.72  Aligned_cols=127  Identities=17%  Similarity=0.296  Sum_probs=97.0

Q ss_pred             CCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEE
Q 043745            4 PRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMIG   82 (174)
Q Consensus         4 pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~   82 (174)
                      ||+|.. ...++...+.+.+|||+|++.|..++..+++++|++++|||+++++++..+..|+..+.... ..+.|+++|+
T Consensus        30 ~t~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~  108 (164)
T 1r8s_A           30 PTIGFN-VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFA  108 (164)
T ss_dssp             CCSSCC-EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEE
T ss_pred             CcCcee-EEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEE
Confidence            566622 12333445789999999999999999999999999999999999999999999988876532 2478999999


Q ss_pred             eCCCCCCccCCCHHHHHHHH-----HHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           83 NKTDLKHLRAVATEDAQSYA-----EREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        83 nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      ||+|+.+.  ....+.....     ...+++++++||+++.|++++|+++.+.+.+
T Consensus       109 nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  162 (164)
T 1r8s_A          109 NKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN  162 (164)
T ss_dssp             ECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             ECcCCcCC--CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence            99999753  2222222211     1234579999999999999999999987654

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.89  E-value=2.3e-22  Score=144.86  Aligned_cols=123  Identities=20%  Similarity=0.282  Sum_probs=101.7

Q ss_pred             CCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEE
Q 043745            4 PRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMI   81 (174)
Q Consensus         4 pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv   81 (174)
                      ||+| ....+.+++  +.+.+|||+|++.++..+..+++++|++++|||++++++|+.+..|+..+.... ..+.|+++|
T Consensus        53 ~t~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv  130 (190)
T 1m2o_B           53 PTWHPTSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVIL  130 (190)
T ss_dssp             CCCSCEEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEE
T ss_pred             cCCCCCeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEE
Confidence            5555 344566676  789999999999999999999999999999999999999999999998876542 247999999


Q ss_pred             EeCCCCCCccCCCHHHHHHHHHH------------hCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745           82 GNKTDLKHLRAVATEDAQSYAER------------EGLSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        82 ~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      +||+|+.+  .+..+++.+++..            .+++++++||+++.|++++|+++.+.
T Consensus       131 ~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          131 GNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             EECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             EECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence            99999975  4566666665543            34679999999999999999998754

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.88  E-value=3.5e-23  Score=149.68  Aligned_cols=114  Identities=19%  Similarity=0.282  Sum_probs=96.2

Q ss_pred             CeEEEEEEEeCCCchhhhhhh---HHhhccCCEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC-
Q 043745           16 GRTIKAQIWDTAGQERYRAIT---SAYYRGALGALLVYDVTKP--TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH-   89 (174)
Q Consensus        16 ~~~~~l~l~D~~G~~~~~~~~---~~~~~~~d~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-   89 (174)
                      +..+.++||||+|+++|....   ..+++++|++|+|||+++.  +++..+..|+..+.... .++|+++|+||+|+.+ 
T Consensus        66 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~  144 (196)
T 3llu_A           66 SSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSD  144 (196)
T ss_dssp             TTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCH
T ss_pred             CCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCch
Confidence            667889999999999988776   8999999999999999997  77778888888775444 3799999999999854 


Q ss_pred             ------ccCCCHHHHHHHHH----HhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           90 ------LRAVATEDAQSYAE----REGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        90 ------~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                            .+.+..++.+.++.    .++++++++||++ .|++++|+.+++.+
T Consensus       145 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          145 DHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             hhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence                  24455566777887    6788999999999 99999999998865

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.88  E-value=1.6e-22  Score=142.25  Aligned_cols=126  Identities=16%  Similarity=0.321  Sum_probs=99.1

Q ss_pred             CCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEE
Q 043745            4 PRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMI   81 (174)
Q Consensus         4 pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv   81 (174)
                      ||+| ..+.+.++  ...+.+|||+|++.|...+..+++++|++++|||+++++++..+..|+..+..... .+.|+++|
T Consensus        37 ~t~~~~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv  114 (171)
T 1upt_A           37 PTIGFNVETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVF  114 (171)
T ss_dssp             CCSSEEEEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEE
T ss_pred             CcCccceEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEE
Confidence            5666 33345555  47789999999999999999999999999999999999999999888887755422 47999999


Q ss_pred             EeCCCCCCccCCCHHHHHHH-----HHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           82 GNKTDLKHLRAVATEDAQSY-----AEREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        82 ~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      +||+|+.+...  ..+....     +...+++++++||+++.|++++|+++.+.+.+
T Consensus       115 ~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  169 (171)
T 1upt_A          115 ANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS  169 (171)
T ss_dssp             EECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             EECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence            99999976422  2222221     22345689999999999999999999988753

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.81  E-value=1.4e-24  Score=157.81  Aligned_cols=118  Identities=29%  Similarity=0.591  Sum_probs=102.2

Q ss_pred             EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCCCcc
Q 043745           13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMIGNKTDLKHLR   91 (174)
Q Consensus        13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~   91 (174)
                      .+++..+.+.||||+|+++|...+..+++++|++++|||+++++++..+. .|+..+..... ++|+++|+||+|+.+..
T Consensus        72 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~  150 (204)
T 3th5_A           72 MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDK  150 (204)
Confidence            44566678889999999999999999999999999999999999999986 88888776544 78999999999997542


Q ss_pred             ------------CCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHH
Q 043745           92 ------------AVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        92 ------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                                  .+..+++..++..++. +++++||+++.|++++|+++++.+
T Consensus       151 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
Confidence                        4556777888888887 899999999999999999998765

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.88  E-value=1.2e-21  Score=151.67  Aligned_cols=129  Identities=25%  Similarity=0.508  Sum_probs=113.2

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piil   80 (174)
                      ||++  ..+.+.+++..+.+.||||+|++.|...+..+++++|++++|||++++.++..+. .|+..+..... ++|+++
T Consensus       186 ~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~il  264 (332)
T 2wkq_A          186 PTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIIL  264 (332)
T ss_dssp             CCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEE
T ss_pred             CcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEE
Confidence            4555  3445677899999999999999999999999999999999999999999999986 78888877654 799999


Q ss_pred             EEeCCCCCCc------------cCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHL------------RAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        81 v~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      |+||+|+.+.            +.+..+++..++...+. +++++||+++.|++++|+++.+.++.
T Consensus       265 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          265 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             EEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence            9999999653            56788899999999997 99999999999999999999988753

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.88  E-value=1.7e-21  Score=139.48  Aligned_cols=126  Identities=17%  Similarity=0.320  Sum_probs=97.4

Q ss_pred             CCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEE
Q 043745            4 PRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMI   81 (174)
Q Consensus         4 pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv   81 (174)
                      ||+| ..+.+.+++  +.+.||||+|++++...+..+++++|++++|||+++.+++..+..|+..+.... ..+.|+++|
T Consensus        46 ~t~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv  123 (187)
T 1zj6_A           46 PTIGSNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIF  123 (187)
T ss_dssp             CCSCSSCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEE
T ss_pred             CCCccceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEE
Confidence            5555 333455555  789999999999999999999999999999999999999999999998886642 247999999


Q ss_pred             EeCCCCCCccCCCHHHHHHHHH-----HhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           82 GNKTDLKHLRAVATEDAQSYAE-----REGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        82 ~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      +||+|+.+  ....++..+...     ..+++++++||+++.|++++|+++++.+..
T Consensus       124 ~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  178 (187)
T 1zj6_A          124 ANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI  178 (187)
T ss_dssp             EECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred             EECCCCcC--CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence            99999975  233445444432     235689999999999999999999887643

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.88  E-value=6e-22  Score=141.55  Aligned_cols=119  Identities=20%  Similarity=0.296  Sum_probs=94.1

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCCC
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~   89 (174)
                      .+.++  .+.+.+|||+|++.|...+..+++++|++++|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+
T Consensus        54 ~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~  131 (181)
T 1fzq_A           54 SVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT  131 (181)
T ss_dssp             EEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTT
T ss_pred             EEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCccc
Confidence            34455  3678999999999999999999999999999999999999999999988775432 24789999999999976


Q ss_pred             ccCCCHHHHHHHH-----HHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           90 LRAVATEDAQSYA-----EREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        90 ~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      ...  .++..+..     ...+++++++||++|.|++++|+++.+.+.+
T Consensus       132 ~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  178 (181)
T 1fzq_A          132 AAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA  178 (181)
T ss_dssp             CCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred             CCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence            432  23332221     1224579999999999999999999887654

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.88  E-value=1.5e-21  Score=140.10  Aligned_cols=126  Identities=21%  Similarity=0.394  Sum_probs=101.7

Q ss_pred             CCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCeEE
Q 043745            4 PRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD---SNIVIM   79 (174)
Q Consensus         4 pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~pii   79 (174)
                      ||+| ..+.+.+++  +.+.||||+|++++...+..+++++|++|+|||+++.+++..+..|+..+.....   .+.|++
T Consensus        53 ~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~pii  130 (190)
T 2h57_A           53 PTIGFSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPIL  130 (190)
T ss_dssp             CCSSEEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEE
T ss_pred             CccceeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEE
Confidence            5666 333445554  7899999999999999999999999999999999999999999999888766532   478999


Q ss_pred             EEEeCCCCCCccCCCHHHHHHHHH-----HhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           80 MIGNKTDLKHLRAVATEDAQSYAE-----REGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        80 lv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      +|+||+|+.+  ....++..+++.     ..+++++++||+++.|++++|+++.+.+.+
T Consensus       131 lv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          131 FFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             EEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             EEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence            9999999975  344556665553     235689999999999999999999887644

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.88  E-value=2.1e-22  Score=157.97  Aligned_cols=131  Identities=16%  Similarity=0.235  Sum_probs=108.7

Q ss_pred             CCCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhh
Q 043745            3 QPRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTK----------PTTFENVSRWLKELRDH   71 (174)
Q Consensus         3 ~pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~~~   71 (174)
                      .||+| ..+.+.++  .+.+++|||+|++.|+..|..||++++++|||||+++          ..++.....|+..+...
T Consensus       178 ~~T~Gi~~~~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~  255 (353)
T 1cip_A          178 VKTTGIVETHFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN  255 (353)
T ss_dssp             CCCCSEEEEEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred             CceeceEEEEEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcC
Confidence            47888 44455565  4889999999999999999999999999999999999          45788888888888664


Q ss_pred             cC-CCCeEEEEEeCCCCCCcc---------------CCCHHHHHHHHH-----------HhCCcEEEEeccCCCCHHHHH
Q 043745           72 AD-SNIVIMMIGNKTDLKHLR---------------AVATEDAQSYAE-----------REGLSFIETSALEAINVEKAF  124 (174)
Q Consensus        72 ~~-~~~piilv~nK~Dl~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~v~  124 (174)
                      .. .++|+||++||+|+.+.+               .++.+++..++.           ..++.+++|||+++.|+.++|
T Consensus       256 ~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF  335 (353)
T 1cip_A          256 KWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVF  335 (353)
T ss_dssp             GGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHH
T ss_pred             ccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHH
Confidence            32 579999999999995432               367788888886           345789999999999999999


Q ss_pred             HHHHHHHHHHH
Q 043745          125 QTILSEIYRII  135 (174)
Q Consensus       125 ~~l~~~i~~~~  135 (174)
                      +++.+.+.+..
T Consensus       336 ~~v~~~i~~~~  346 (353)
T 1cip_A          336 DAVTDVIIKNN  346 (353)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHH
Confidence            99999987643

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.87  E-value=1e-22  Score=146.86  Aligned_cols=114  Identities=16%  Similarity=0.316  Sum_probs=87.1

Q ss_pred             eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCCCccCCCH
Q 043745           17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMIGNKTDLKHLRAVAT   95 (174)
Q Consensus        17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~   95 (174)
                      ..+.+.+|||+|+++|...+..+++++|++++|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+.  ...
T Consensus        71 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~  148 (192)
T 2b6h_A           71 KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MPV  148 (192)
T ss_dssp             TTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCH
T ss_pred             CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCH
Confidence            34789999999999999999999999999999999999999999999988876532 247999999999999753  222


Q ss_pred             HHHHHHH-----HHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           96 EDAQSYA-----EREGLSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        96 ~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      ++..+..     ...+++++++||+++.|++++|+++++.+.
T Consensus       149 ~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~  190 (192)
T 2b6h_A          149 SELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS  190 (192)
T ss_dssp             HHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred             HHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence            2222211     122457999999999999999999988763

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.87  E-value=4.2e-23  Score=148.27  Aligned_cols=117  Identities=21%  Similarity=0.354  Sum_probs=93.3

Q ss_pred             CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCCCccCC
Q 043745           15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMIGNKTDLKHLRAV   93 (174)
Q Consensus        15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~   93 (174)
                      +...+.+.|||++|+++|..++..+++++|++|||||+++.+++..+..|+..+.... ..++|+++|+||+|+...  .
T Consensus        63 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~  140 (188)
T 1zd9_A           63 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--L  140 (188)
T ss_dssp             EETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--C
T ss_pred             EeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--C
Confidence            3345789999999999999999999999999999999999999999999988876542 247999999999999753  2


Q ss_pred             CHHHHHHHHH-----HhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           94 ATEDAQSYAE-----REGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        94 ~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      ..++..+...     ..+++++++||+++.|++++|+++.+.+.+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~  185 (188)
T 1zd9_A          141 DEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS  185 (188)
T ss_dssp             CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred             CHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            2333222211     234579999999999999999999887643

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.87  E-value=3.3e-21  Score=137.72  Aligned_cols=126  Identities=22%  Similarity=0.351  Sum_probs=100.6

Q ss_pred             CCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEE
Q 043745            4 PRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMI   81 (174)
Q Consensus         4 pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv   81 (174)
                      ||+| ..+.+.+++  +.+.+|||+|+++|...+..+++++|++++|||+++++++..+..|+..+.... ..+.|+++|
T Consensus        48 ~t~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv  125 (186)
T 1ksh_A           48 PTLGFNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIF  125 (186)
T ss_dssp             CCSSEEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEE
T ss_pred             ccCccceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEE
Confidence            6666 333455554  778999999999999999999999999999999999999999999988876542 247999999


Q ss_pred             EeCCCCCCccCCCHHHHHHHHH-----HhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           82 GNKTDLKHLRAVATEDAQSYAE-----REGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        82 ~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      +||+|+.+..  ..++..+...     ..+++++++||+++.|++++|+++.+.+.+
T Consensus       126 ~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  180 (186)
T 1ksh_A          126 ANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS  180 (186)
T ss_dssp             EECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             EeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence            9999997642  3333333222     235689999999999999999999988754

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.87  E-value=1.7e-21  Score=138.94  Aligned_cols=123  Identities=18%  Similarity=0.327  Sum_probs=98.2

Q ss_pred             CCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEE
Q 043745            4 PRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMI   81 (174)
Q Consensus         4 pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv   81 (174)
                      ||+| ..+.+.+++  +.+.||||+|+++|...+..+++++|++++|||+++.+++..+..|+..+.... ..++|+++|
T Consensus        51 ~t~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv  128 (181)
T 2h17_A           51 PTIGSNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIF  128 (181)
T ss_dssp             CCSSSSCEEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEE
T ss_pred             CcCceeeEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEE
Confidence            5555 333455655  789999999999999999999999999999999999999999999988876542 247999999


Q ss_pred             EeCCCCCCccCCCHHHHHHHH-----HHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745           82 GNKTDLKHLRAVATEDAQSYA-----EREGLSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        82 ~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      +||+|+.+.  ...++..+..     ...+++++++||+++.|++++|+++.+.
T Consensus       129 ~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          129 ANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             EECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred             EECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence            999999752  3344444433     2234689999999999999999998764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.87  E-value=3.6e-22  Score=143.17  Aligned_cols=126  Identities=17%  Similarity=0.295  Sum_probs=99.0

Q ss_pred             CCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEE
Q 043745            4 PRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMI   81 (174)
Q Consensus         4 pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv   81 (174)
                      ||+| ..+.+.++  .+.+.+|||+|++++...+..+++++|++++|||+++++++..+..|+..+.... ..+.|+++|
T Consensus        52 ~t~~~~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv  129 (189)
T 2x77_A           52 PTVGVNLETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIF  129 (189)
T ss_dssp             SSTTCCEEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEE
T ss_pred             CCCceEEEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEE
Confidence            5666 33344555  4788999999999999999999999999999999999999999998888775543 247999999


Q ss_pred             EeCCCCCCccCCCHHHHHHH-----HHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           82 GNKTDLKHLRAVATEDAQSY-----AEREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        82 ~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      +||+|+.+..  ...+....     +...+++++++||+++.|++++|+++.+.+.+
T Consensus       130 ~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  184 (189)
T 2x77_A          130 ANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLRE  184 (189)
T ss_dssp             EECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHh
Confidence            9999997632  22222221     12234579999999999999999999988764

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.86  E-value=6.9e-21  Score=135.50  Aligned_cols=127  Identities=17%  Similarity=0.336  Sum_probs=97.7

Q ss_pred             CCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEE
Q 043745            4 PRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMI   81 (174)
Q Consensus         4 pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv   81 (174)
                      ||+| ....+.+++  ..+.+|||+|++.+...+..+++++|++++|||+++.+++..+..|+..+.... ..+.|+++|
T Consensus        48 ~t~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv  125 (183)
T 1moz_A           48 PTIGFNVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVF  125 (183)
T ss_dssp             SSTTCCEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEE
T ss_pred             CcCccceEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEE
Confidence            5566 333455554  778999999999999999999999999999999999999999999988886653 257999999


Q ss_pred             EeCCCCCCccCCCHHHHHHHHHH-----hCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           82 GNKTDLKHLRAVATEDAQSYAER-----EGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        82 ~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      +||+|+.+.  ...++..+....     .+++++++||+++.|++++|+++.+.+.++
T Consensus       126 ~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  181 (183)
T 1moz_A          126 ANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE  181 (183)
T ss_dssp             EECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHhc
Confidence            999999753  334444433321     235799999999999999999999988654

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.86  E-value=1.3e-21  Score=153.50  Aligned_cols=133  Identities=17%  Similarity=0.215  Sum_probs=102.6

Q ss_pred             CCcc-ceeEEEECC----eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCC----------ChhhHHHHHHHHHHH
Q 043745            4 PRLG-KLCDFQVEG----RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVT----------KPTTFENVSRWLKEL   68 (174)
Q Consensus         4 pt~g-~~~~~~~~~----~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~i   68 (174)
                      +|+| ....+.+++    ..+.+++|||+|++.|+..|..||++++++|||||++          +..++.....|+..+
T Consensus       163 ~T~Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i  242 (354)
T 2xtz_A          163 RTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV  242 (354)
T ss_dssp             CCCSEEEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHH
T ss_pred             cccceeeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHH
Confidence            5556 233344566    6799999999999999999999999999999999998          778999999999888


Q ss_pred             Hhhc-CCCCeEEEEEeCCCCCCccC--C-------------------CHHHHHHHHHH----------------hCCcEE
Q 043745           69 RDHA-DSNIVIMMIGNKTDLKHLRA--V-------------------ATEDAQSYAER----------------EGLSFI  110 (174)
Q Consensus        69 ~~~~-~~~~piilv~nK~Dl~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~  110 (174)
                      .... ..++|++||+||+||.+.+.  +                   +.+++..++.+                ..+.++
T Consensus       243 ~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~  322 (354)
T 2xtz_A          243 LKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIY  322 (354)
T ss_dssp             HTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEE
T ss_pred             HhccccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEE
Confidence            6543 25799999999999854322  1                   14566666443                124568


Q ss_pred             EEeccCCCCHHHHHHHHHHHHHHHHh
Q 043745          111 ETSALEAINVEKAFQTILSEIYRIIS  136 (174)
Q Consensus       111 ~~Sa~~~~~i~~v~~~l~~~i~~~~~  136 (174)
                      +|||+++.|++++|+++.+.+.+...
T Consensus       323 eTSA~d~~nV~~vF~~v~~~I~~~~l  348 (354)
T 2xtz_A          323 RTTALDQKLVKKTFKLVDETLRRRNL  348 (354)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeecchhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999887643

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.85  E-value=4.8e-21  Score=152.11  Aligned_cols=132  Identities=17%  Similarity=0.194  Sum_probs=106.1

Q ss_pred             CCCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhh
Q 043745            3 QPRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTK----------PTTFENVSRWLKELRDH   71 (174)
Q Consensus         3 ~pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~~~   71 (174)
                      .||+| ..+.+.+++  +.+++|||+|++.|+..|..||++++++|||||+++          ..+|..+..|+..+...
T Consensus       202 ~~TiGi~~~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~  279 (402)
T 1azs_C          202 VLTSGIFETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN  279 (402)
T ss_dssp             CCCCSEEEEEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred             cceeeeEEEEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence            47888 444566665  889999999999999999999999999999999999          88999999999998765


Q ss_pred             c-CCCCeEEEEEeCCCCCCccC---C---------------------------CHHHHHHHH-----HH--------hCC
Q 043745           72 A-DSNIVIMMIGNKTDLKHLRA---V---------------------------ATEDAQSYA-----ER--------EGL  107 (174)
Q Consensus        72 ~-~~~~piilv~nK~Dl~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~  107 (174)
                      . ..++|++||+||+||...+.   +                           ..+++..|+     ..        .++
T Consensus       280 ~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~  359 (402)
T 1azs_C          280 RWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYC  359 (402)
T ss_dssp             TTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCE
T ss_pred             ccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCccc
Confidence            3 35799999999999854332   2                           134555553     22        245


Q ss_pred             cEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q 043745          108 SFIETSALEAINVEKAFQTILSEIYRIIS  136 (174)
Q Consensus       108 ~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~  136 (174)
                      .+++|||+++.||+++|.++.+.+.+...
T Consensus       360 ~~~~TSA~d~~nV~~vF~~v~~~I~~~~l  388 (402)
T 1azs_C          360 YPHFTCAVDTENIRRVFNDCRDIIQRMHL  388 (402)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeecCcCHHHHHHHHHHHHHHHHH
Confidence            67899999999999999999998876643

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.85  E-value=6.2e-22  Score=141.75  Aligned_cols=117  Identities=20%  Similarity=0.395  Sum_probs=94.9

Q ss_pred             CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCC
Q 043745           16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP-TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVA   94 (174)
Q Consensus        16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~   94 (174)
                      +..+.+.+|||+|+++|..++..++.+++++++|||+++. .+++.+..|+..+..... +.|+++|+||+|+.+.+.+.
T Consensus        53 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~  131 (184)
T 2zej_A           53 KRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVGTHLDVSDEKQRK  131 (184)
T ss_dssp             ---CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-TCEEEEEEECGGGCCHHHHH
T ss_pred             CCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCC-CCcEEEEEECCCcccchhhH
Confidence            4567899999999999999999999999999999999997 579999999998876543 78999999999997644332


Q ss_pred             ---HHHHHHHHHHhCCc----EEEEeccCCC-CHHHHHHHHHHHHHH
Q 043745           95 ---TEDAQSYAEREGLS----FIETSALEAI-NVEKAFQTILSEIYR  133 (174)
Q Consensus        95 ---~~~~~~~~~~~~~~----~~~~Sa~~~~-~i~~v~~~l~~~i~~  133 (174)
                         .+..+.++..++++    ++++||+++. +++++++.+.+.+..
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          132 ACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN  178 (184)
T ss_dssp             HHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence               23445666667776    9999999997 888888888776654

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.85  E-value=2.8e-21  Score=149.81  Aligned_cols=131  Identities=15%  Similarity=0.203  Sum_probs=106.3

Q ss_pred             CCCCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHh
Q 043745            2 GQPRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVT----------KPTTFENVSRWLKELRD   70 (174)
Q Consensus         2 g~pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~i~~   70 (174)
                      ..||+| ....+.++  .+.+++|||+|++.++..|..||++++++|||||++          +..++.....|+..+..
T Consensus       151 r~~TiGi~~~~~~~~--~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~  228 (327)
T 3ohm_A          151 RVPTTGIIEYPFDLQ--SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIIT  228 (327)
T ss_dssp             CCCCCSEEEEEEEET--TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHT
T ss_pred             cCceeeEEEEEEEee--ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhh
Confidence            358999 44444455  488999999999999999999999999999999665          56678777778887765


Q ss_pred             hcC-CCCeEEEEEeCCCCCCcc----------------CCCHHHHHHHHH----------HhCCcEEEEeccCCCCHHHH
Q 043745           71 HAD-SNIVIMMIGNKTDLKHLR----------------AVATEDAQSYAE----------REGLSFIETSALEAINVEKA  123 (174)
Q Consensus        71 ~~~-~~~piilv~nK~Dl~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~v  123 (174)
                      ... .++|++|++||+|+.+.+                .++.+++..++.          ..++.++++||+++.|++.+
T Consensus       229 ~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~v  308 (327)
T 3ohm_A          229 YPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFV  308 (327)
T ss_dssp             SGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHH
T ss_pred             hhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHH
Confidence            432 579999999999986544                467788888743          34567899999999999999


Q ss_pred             HHHHHHHHHHH
Q 043745          124 FQTILSEIYRI  134 (174)
Q Consensus       124 ~~~l~~~i~~~  134 (174)
                      |..+.+.+++.
T Consensus       309 F~~v~~~Il~~  319 (327)
T 3ohm_A          309 FAAVKDTILQL  319 (327)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            99999999874

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.85  E-value=5.9e-20  Score=132.34  Aligned_cols=128  Identities=73%  Similarity=1.136  Sum_probs=113.8

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||+|   ....+.+++..+.+.+||++|++++...+..+++.++++++|||.++..+++.+..|+..+......+.|+++
T Consensus        60 ~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~  139 (191)
T 1oix_A           60 STIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIML  139 (191)
T ss_dssp             CCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred             CccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence            5666   4567788999999999999999999999999999999999999999999999998898887665445789999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      ++||.|+.+.+.+..++++.++...++.++++||+++.|++++|+.+.+.+
T Consensus       140 v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          140 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI  190 (191)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            999999987677788889999999999999999999999999999998765

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.85  E-value=3.8e-21  Score=151.33  Aligned_cols=132  Identities=19%  Similarity=0.264  Sum_probs=101.1

Q ss_pred             CCCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhh
Q 043745            3 QPRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTK----------PTTFENVSRWLKELRDH   71 (174)
Q Consensus         3 ~pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~~~   71 (174)
                      .||+| ..+.+.+++  +.+++|||+|++.|+..|..+|++++++|||||+++          ..++.....|+..+...
T Consensus       186 ~~T~Gi~~~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~  263 (362)
T 1zcb_A          186 RPTKGIHEYDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNN  263 (362)
T ss_dssp             CCCSSEEEEEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred             CCccceEEEEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcc
Confidence            47888 444555654  889999999999999999999999999999999999          67899998998888654


Q ss_pred             c-CCCCeEEEEEeCCCCCCcc----------------CCCHHHHHHHHH-----------HhCCcEEEEeccCCCCHHHH
Q 043745           72 A-DSNIVIMMIGNKTDLKHLR----------------AVATEDAQSYAE-----------REGLSFIETSALEAINVEKA  123 (174)
Q Consensus        72 ~-~~~~piilv~nK~Dl~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~v  123 (174)
                      . ..++|+||++||+||.+.+                .++.+++..++.           ..++.+++|||+++.|++++
T Consensus       264 ~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~v  343 (362)
T 1zcb_A          264 RVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLV  343 (362)
T ss_dssp             GGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHH
T ss_pred             hhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHH
Confidence            2 2579999999999996432                266777777762           34578899999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 043745          124 FQTILSEIYRIIS  136 (174)
Q Consensus       124 ~~~l~~~i~~~~~  136 (174)
                      |+++.+.+.+...
T Consensus       344 F~~v~~~i~~~~l  356 (362)
T 1zcb_A          344 FRDVKDTILHDNL  356 (362)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887543

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.84  E-value=3.5e-22  Score=154.45  Aligned_cols=127  Identities=16%  Similarity=0.182  Sum_probs=96.8

Q ss_pred             CCccceeEEEECCeEEEEEEEeCCCchhhhh---hhHHhhccCCEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCeE
Q 043745            4 PRLGKLCDFQVEGRTIKAQIWDTAGQERYRA---ITSAYYRGALGALLVYDVTKP--TTFENVSRWLKELRDHADSNIVI   78 (174)
Q Consensus         4 pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~---~~~~~~~~~d~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~pi   78 (174)
                      ||+|.... .++ ..+.+++|||+||++|..   .+..||++++++|||||++++  +.+..+..|+..+.... +++|+
T Consensus        33 ~Tig~~~~-~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipi  109 (331)
T 3r7w_B           33 STSNPSLE-HFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINI  109 (331)
T ss_dssp             CCCSCCCE-EEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEE
T ss_pred             CeeeeeeE-EEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcE
Confidence            67772221 233 348899999999999974   468999999999999999997  34444445565555444 47999


Q ss_pred             EEEEeCCCCCCc-------cCCCHHHHHHHHHH----hCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           79 MMIGNKTDLKHL-------RAVATEDAQSYAER----EGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        79 ilv~nK~Dl~~~-------~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      ++++||+||...       +++..++++++++.    +++.|+++||++ .++.++|..+++.+...
T Consensus       110 llvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~~  175 (331)
T 3r7w_B          110 EVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIPE  175 (331)
T ss_dssp             EEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSSTT
T ss_pred             EEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHHhh
Confidence            999999999753       35666777788875    678999999997 59999999998776543

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.84  E-value=5.3e-22  Score=154.61  Aligned_cols=116  Identities=16%  Similarity=0.280  Sum_probs=87.9

Q ss_pred             CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCCCccCCC
Q 043745           16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMIGNKTDLKHLRAVA   94 (174)
Q Consensus        16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~   94 (174)
                      ...+.+.||||+|++.|..++..+++.+|++|+|||+++.++|..+..|+..+.... ..++|++||+||+|+.+..  .
T Consensus       206 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~  283 (329)
T 3o47_A          206 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--N  283 (329)
T ss_dssp             ETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--C
T ss_pred             cCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--C
Confidence            344789999999999999999999999999999999999999999988877765433 2579999999999997633  2


Q ss_pred             HHHHHHHHH-----HhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           95 TEDAQSYAE-----REGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        95 ~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      .++......     ..+++++++||+++.|++++|++|++.+.+
T Consensus       284 ~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~  327 (329)
T 3o47_A          284 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN  327 (329)
T ss_dssp             HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence            233222221     123569999999999999999999987653

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.83  E-value=3.5e-21  Score=140.68  Aligned_cols=120  Identities=16%  Similarity=0.236  Sum_probs=84.9

Q ss_pred             EEEECCe-EEEEEEEeCCCchhhhh-hhHHhhccCCEEEEEEeCCChh-hHHHHHHHHHH-HHhh--cCCCCeEEEEEeC
Q 043745           11 DFQVEGR-TIKAQIWDTAGQERYRA-ITSAYYRGALGALLVYDVTKPT-TFENVSRWLKE-LRDH--ADSNIVIMMIGNK   84 (174)
Q Consensus        11 ~~~~~~~-~~~l~l~D~~G~~~~~~-~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~-i~~~--~~~~~piilv~nK   84 (174)
                      .+.+++. .+.+.||||+|+++|.. ++..+++++|++|||||+++.+ ++..+..|+.. +...  ...++|+++|+||
T Consensus        45 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK  124 (214)
T 2fh5_B           45 IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNK  124 (214)
T ss_dssp             EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEEC
T ss_pred             EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEEC
Confidence            3455544 68899999999999998 8999999999999999999854 46666554443 3331  2346899999999


Q ss_pred             CCCCCccCCCH--HHHHHHHH---------------------------------Hh--CCcEEEEeccCC------CCHH
Q 043745           85 TDLKHLRAVAT--EDAQSYAE---------------------------------RE--GLSFIETSALEA------INVE  121 (174)
Q Consensus        85 ~Dl~~~~~~~~--~~~~~~~~---------------------------------~~--~~~~~~~Sa~~~------~~i~  121 (174)
                      +|+...+....  +.+.....                                 .+  +++|+++||+++      .|++
T Consensus       125 ~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~  204 (214)
T 2fh5_B          125 QDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQ  204 (214)
T ss_dssp             TTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCH
T ss_pred             CCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChH
Confidence            99976433211  11111111                                 11  567999999999      9999


Q ss_pred             HHHHHHHHH
Q 043745          122 KAFQTILSE  130 (174)
Q Consensus       122 ~v~~~l~~~  130 (174)
                      ++|+++.+.
T Consensus       205 ~lf~~l~~~  213 (214)
T 2fh5_B          205 DLEKWLAKI  213 (214)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999875

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.82  E-value=4.9e-20  Score=142.21  Aligned_cols=117  Identities=20%  Similarity=0.355  Sum_probs=96.8

Q ss_pred             EEECCeEEEEEEEeCCCchhh-----hhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHH---HhhcCCCCeEEEEEe
Q 043745           12 FQVEGRTIKAQIWDTAGQERY-----RAITSAYYRGALGALLVYDVTKPTTFENVSRWLKEL---RDHADSNIVIMMIGN   83 (174)
Q Consensus        12 ~~~~~~~~~l~l~D~~G~~~~-----~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i---~~~~~~~~piilv~n   83 (174)
                      +.+++ .+.+.+|||+|++.|     ...+..+++++|++|+|||+++.++++.+..|...+   .... .++|+++|+|
T Consensus        46 ~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~-~~~piilv~N  123 (307)
T 3r7w_A           46 LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYS-PDAKIFVLLH  123 (307)
T ss_dssp             EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHC-TTCEEEEEEE
T ss_pred             EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhC-CCCeEEEEEe
Confidence            34444 578999999999998     778999999999999999999999999987775544   3333 4799999999


Q ss_pred             CCCCCC--ccC----CCHHHHHHHHHHhC---CcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           84 KTDLKH--LRA----VATEDAQSYAEREG---LSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        84 K~Dl~~--~~~----~~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      |+|+.+  .+.    +..+++++++..+|   ++++++||++ .++.++|..+++.+
T Consensus       124 K~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~l  179 (307)
T 3r7w_A          124 KMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSL  179 (307)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred             cccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence            999976  443    55678889999987   7899999999 89999998887654

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.82  E-value=5.5e-20  Score=129.36  Aligned_cols=111  Identities=18%  Similarity=0.190  Sum_probs=87.5

Q ss_pred             EEECCeEEEEEEEeCCCchhhh------hhhHHhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEe
Q 043745           12 FQVEGRTIKAQIWDTAGQERYR------AITSAYYR--GALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGN   83 (174)
Q Consensus        12 ~~~~~~~~~l~l~D~~G~~~~~------~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~n   83 (174)
                      +.+++  ..+.+|||+|++.|.      .+...++.  ++|++++|+|+++.+   ....|+..+...   +.|+++|+|
T Consensus        45 ~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~---~~~~~~~~~~~~---~~p~ilv~n  116 (165)
T 2wji_A           45 FEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALE---RNLYLTLQLMEM---GANLLLALN  116 (165)
T ss_dssp             EEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHH---HHHHHHHHHHHT---TCCEEEEEE
T ss_pred             EEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchh---HhHHHHHHHHhc---CCCEEEEEE
Confidence            34444  578999999998774      44566765  899999999998854   344577776553   689999999


Q ss_pred             CCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           84 KTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        84 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      |+|+...+.+.. +.+.++..++++++++||+++.|++++|+++.+.+
T Consensus       117 K~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          117 KMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             CHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred             chHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence            999975444443 46788888999999999999999999999998764

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.82  E-value=1.1e-20  Score=142.33  Aligned_cols=117  Identities=26%  Similarity=0.331  Sum_probs=93.4

Q ss_pred             ECCeEEEEEEEe-----------------------CCCchhhhhhhHHhhc---------------------cCCEEEEE
Q 043745           14 VEGRTIKAQIWD-----------------------TAGQERYRAITSAYYR---------------------GALGALLV   49 (174)
Q Consensus        14 ~~~~~~~l~l~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~ii~v   49 (174)
                      +++..+.++|||                       ++|+++|..++..++.                     ++|++|+|
T Consensus        90 ~~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV  169 (255)
T 3c5h_A           90 EDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLG  169 (255)
T ss_dssp             ------CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEE
T ss_pred             cCCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEE
Confidence            567888999999                       7788888888888887                     79999999


Q ss_pred             EeCCCh--hhHHHHHHHHHHHHhh-cCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHH-hCCcEEEEeccCCCCHHHHHH
Q 043745           50 YDVTKP--TTFENVSRWLKELRDH-ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAER-EGLSFIETSALEAINVEKAFQ  125 (174)
Q Consensus        50 ~d~~~~--~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~v~~  125 (174)
                      ||++++  ++|+.+..|+..+... ...++|++||+||+|+.+.+.+  ++.+.++.. .+++++++||+++.|++++|+
T Consensus       170 ~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~  247 (255)
T 3c5h_A          170 IDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFS  247 (255)
T ss_dssp             EECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHH
T ss_pred             EECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHH
Confidence            999998  9999999999988765 2247999999999999765444  567777776 478999999999999999999


Q ss_pred             HHHHHHH
Q 043745          126 TILSEIY  132 (174)
Q Consensus       126 ~l~~~i~  132 (174)
                      ++++.+.
T Consensus       248 ~l~~~l~  254 (255)
T 3c5h_A          248 TLVQLID  254 (255)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9988763

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.82  E-value=2.5e-20  Score=145.10  Aligned_cols=131  Identities=15%  Similarity=0.198  Sum_probs=103.8

Q ss_pred             CCCCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhh
Q 043745            2 GQPRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVT----------KPTTFENVSRWLKELRDH   71 (174)
Q Consensus         2 g~pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~i~~~   71 (174)
                      ..||+|.. ...+..+.+.+++|||+|++.|+..|..||++++++|||||++          +..++.....|+..+...
T Consensus       145 ~~~TiGi~-~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~  223 (340)
T 4fid_A          145 RTKTTGIH-EYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTN  223 (340)
T ss_dssp             CCCCCSCE-EEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHC
T ss_pred             ccceeeeE-EEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhh
Confidence            35888933 2333334588999999999999999999999999999999998          678888888888887654


Q ss_pred             cC-CCCeEEEEEeCCCCCCcc---------------CCCHHHHHHHHHH-h--------------------------CCc
Q 043745           72 AD-SNIVIMMIGNKTDLKHLR---------------AVATEDAQSYAER-E--------------------------GLS  108 (174)
Q Consensus        72 ~~-~~~piilv~nK~Dl~~~~---------------~~~~~~~~~~~~~-~--------------------------~~~  108 (174)
                      .. .++|++|++||+|+.+.+               ....+++.+++.. +                          .+.
T Consensus       224 ~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy  303 (340)
T 4fid_A          224 EFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVY  303 (340)
T ss_dssp             GGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEE
T ss_pred             hccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceE
Confidence            32 579999999999985321               1245565555432 2                          367


Q ss_pred             EEEEeccCCCCHHHHHHHHHHHHHH
Q 043745          109 FIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus       109 ~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      ++++||+++.|++.+|..+.+.|++
T Consensus       304 ~h~TsA~dt~nv~~vF~~v~~~Il~  328 (340)
T 4fid_A          304 TNPTNATDGSNIKRVFMLAVDVIMK  328 (340)
T ss_dssp             EEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeeCcHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999998

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.82  E-value=1.5e-19  Score=133.56  Aligned_cols=118  Identities=19%  Similarity=0.156  Sum_probs=89.3

Q ss_pred             EEEEEEeCCCc------hhh---hhhhHHhhccCCEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745           19 IKAQIWDTAGQ------ERY---RAITSAYYRGALGALLVYDVTKPTTFE--NVSRWLKELRDHADSNIVIMMIGNKTDL   87 (174)
Q Consensus        19 ~~l~l~D~~G~------~~~---~~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~Dl   87 (174)
                      ..+.||||+|+      +..   ...+..++..+|++|+|||+++..++.  ....|+..+.... .++|+++|+||+|+
T Consensus        76 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl  154 (228)
T 2qu8_A           76 NKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDK  154 (228)
T ss_dssp             EEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGG
T ss_pred             CeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCccc
Confidence            57899999999      431   122345578899999999999987765  2345666665432 37899999999999


Q ss_pred             CCccCCCHH---HHHHHHHHhC--CcEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q 043745           88 KHLRAVATE---DAQSYAEREG--LSFIETSALEAINVEKAFQTILSEIYRIISK  137 (174)
Q Consensus        88 ~~~~~~~~~---~~~~~~~~~~--~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~  137 (174)
                      .+.+.+...   ..+.++...+  ++++++||+++.|++++|+++.+.+.+....
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~  209 (228)
T 2qu8_A          155 CNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQAE  209 (228)
T ss_dssp             CC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHHHH
Confidence            876666654   4566677777  8999999999999999999999998876543

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.81  E-value=6.6e-20  Score=141.17  Aligned_cols=119  Identities=16%  Similarity=0.196  Sum_probs=98.5

Q ss_pred             CCCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEE
Q 043745            3 QPRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPT-TFENVSRWLKELRDHADSNIVIMMI   81 (174)
Q Consensus         3 ~pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv   81 (174)
                      .||+|....+.+..+. .+.+||+  +++|+.+++.+++++|++|+|||+++++ ++..+..|+..+..   .++|++||
T Consensus        48 ~pTiGd~~~~~~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~---~~~piilv  121 (301)
T 1u0l_A           48 KIYVGDRVEYTPDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMV  121 (301)
T ss_dssp             CCCTTCEEEEECCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEE
T ss_pred             CCCCccEEEEEEcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEE
Confidence            4899954444443322 6899999  9999999999999999999999999987 78889999987755   27899999


Q ss_pred             EeCCCCCCccCCCHHHHHHHHHHhC--CcEEEEeccCCCCHHHHHHHHHH
Q 043745           82 GNKTDLKHLRAVATEDAQSYAEREG--LSFIETSALEAINVEKAFQTILS  129 (174)
Q Consensus        82 ~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~v~~~l~~  129 (174)
                      +||+||.+.+.+  ++.++++..++  ++++++||+++.|++++|..+..
T Consensus       122 ~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          122 INKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             ECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred             EeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence            999999764433  45677777777  89999999999999999988754

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.79  E-value=2.4e-19  Score=128.03  Aligned_cols=113  Identities=23%  Similarity=0.201  Sum_probs=90.2

Q ss_pred             EEEEEeCCC-----------chhhhhhhHHhhcc-CCEEEEEEeCCChhhHHHH-HHHHHH--------H-HhhcCCCCe
Q 043745           20 KAQIWDTAG-----------QERYRAITSAYYRG-ALGALLVYDVTKPTTFENV-SRWLKE--------L-RDHADSNIV   77 (174)
Q Consensus        20 ~l~l~D~~G-----------~~~~~~~~~~~~~~-~d~ii~v~d~~~~~s~~~~-~~~~~~--------i-~~~~~~~~p   77 (174)
                      .+.+|||+|           ++.|...+..++++ +++++++|++.|..++..+ ..|...        + ......++|
T Consensus        45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  124 (190)
T 2cxx_A           45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP  124 (190)
T ss_dssp             TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC
T ss_pred             CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc
Confidence            578999999           78888889989887 8888888888888888877 667542        2 122224789


Q ss_pred             EEEEEeCCCCCCccCCCHHHHHHHHHHhCCc-------EEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745           78 IMMIGNKTDLKHLRAVATEDAQSYAEREGLS-------FIETSALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus        78 iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                      +++|+||+|+...+   .++.++++..++.+       ++++||+++.|++++|+++.+.+.+..
T Consensus       125 iilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  186 (190)
T 2cxx_A          125 TIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ  186 (190)
T ss_dssp             EEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred             eEEEeehHhccCcH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence            99999999997644   56788888888864       799999999999999999999876543

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.78  E-value=6.5e-19  Score=136.01  Aligned_cols=111  Identities=17%  Similarity=0.131  Sum_probs=93.2

Q ss_pred             EEEEEEEeCCCchh----------hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745           18 TIKAQIWDTAGQER----------YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL   87 (174)
Q Consensus        18 ~~~l~l~D~~G~~~----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl   87 (174)
                      ...+.||||||+.+          +...+..++..+|++++|+|+++..++.....|+..+...   +.|+++|+||+|+
T Consensus        58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvilV~NK~Dl  134 (308)
T 3iev_A           58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIVVINKIDK  134 (308)
T ss_dssp             TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEEEEECGGG
T ss_pred             CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEEEEECccC
Confidence            57789999999854          3366788899999999999999988888887788877653   6899999999999


Q ss_pred             CCccCCCHHHHHHHHHHhC--CcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           88 KHLRAVATEDAQSYAEREG--LSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      ...+....+....+...++  .+++++||+++.|++++|+++.+.+
T Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l  180 (308)
T 3iev_A          135 IGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYL  180 (308)
T ss_dssp             SSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhC
Confidence            7445555677788888876  7899999999999999999988765

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.78  E-value=5.7e-19  Score=124.88  Aligned_cols=115  Identities=17%  Similarity=0.157  Sum_probs=83.9

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      .+.+++.  .+.||||+|++.|..++..++..+|++++|||+++....... .++..+..   .++|+++|+||+|+.+.
T Consensus        49 ~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~l~~~~~---~~~p~ilv~nK~Dl~~~  122 (178)
T 2lkc_A           49 QVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTV-EAINHAKA---ANVPIIVAINKMDKPEA  122 (178)
T ss_dssp             EEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHH-HHHHHHGG---GSCCEEEEEETTTSSCS
T ss_pred             EEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHh---CCCCEEEEEECccCCcC
Confidence            4566664  568999999999999999999999999999999884322221 12222222   36899999999999752


Q ss_pred             cCCCHHHHHHHHHHh-------C--CcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           91 RAVATEDAQSYAERE-------G--LSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                         ..++........       +  ++++++||+++.|++++|+++++.+...
T Consensus       123 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~  172 (178)
T 2lkc_A          123 ---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEME  172 (178)
T ss_dssp             ---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHT
T ss_pred             ---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhh
Confidence               233333333322       2  4799999999999999999999887654

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.77  E-value=4.9e-19  Score=145.94  Aligned_cols=113  Identities=17%  Similarity=0.225  Sum_probs=95.5

Q ss_pred             eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHH
Q 043745           17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATE   96 (174)
Q Consensus        17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~   96 (174)
                      ..+.+.+||++|++.|..++..+++++|++|+|||+++.   +.+..|+..+..+.. +.|+++|+||+|+.+.+.+..+
T Consensus        96 ~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~~~~v~~~  171 (535)
T 3dpu_A           96 KECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-KSPVIVVMNKIDENPSYNIEQK  171 (535)
T ss_dssp             TTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-SCCEEEEECCTTTCTTCCCCHH
T ss_pred             ceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-CCCEEEEEECCCcccccccCHH
Confidence            357899999999999999999999999999999999865   455778888877754 6899999999999887788888


Q ss_pred             HHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           97 DAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        97 ~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      +.+.++...+.+++++||+++.|++++|+++.+.+..
T Consensus       172 ~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~  208 (535)
T 3dpu_A          172 KINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLH  208 (535)
T ss_dssp             HHHHHCGGGTTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred             HHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHHhc
Confidence            8999999999999999999999999999999887654

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.77  E-value=1.3e-18  Score=124.31  Aligned_cols=108  Identities=18%  Similarity=0.160  Sum_probs=87.8

Q ss_pred             EEEEEEeCCCchhhh------hhhHHhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           19 IKAQIWDTAGQERYR------AITSAYYR--GALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~------~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      ..+.+|||+|++.+.      .++..++.  .+|++++|+|.++   ++....|+..+..   .+.|+++|+||+|+...
T Consensus        54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~  127 (188)
T 2wjg_A           54 EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKS  127 (188)
T ss_dssp             EEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHH
T ss_pred             cEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhcccc
Confidence            678999999998774      45667775  4999999999875   5566678777655   36899999999999765


Q ss_pred             cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      +.+. .+.+.++..++++++++||+++.|++++|+++.+.+..
T Consensus       128 ~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~  169 (188)
T 2wjg_A          128 LGIE-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKD  169 (188)
T ss_dssp             TTCC-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTT
T ss_pred             ccch-HHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHh
Confidence            4444 45778888899999999999999999999999887654

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.76  E-value=8.1e-19  Score=132.31  Aligned_cols=107  Identities=17%  Similarity=0.166  Sum_probs=85.5

Q ss_pred             EEEEEEEeCCCchhhhh------hhHHhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           18 TIKAQIWDTAGQERYRA------ITSAYY--RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~------~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      ...+.||||||+..+..      +...++  .++|++++|+|+++.++.   ..|+..+...   ++|+++++||+|+.+
T Consensus        51 ~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~---~~~~~~l~~~---~~pvilv~NK~Dl~~  124 (258)
T 3a1s_A           51 GYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQS---LYLLLEILEM---EKKVILAMTAIDEAK  124 (258)
T ss_dssp             TEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHH---HHHHHHHHTT---TCCEEEEEECHHHHH
T ss_pred             CeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhH---HHHHHHHHhc---CCCEEEEEECcCCCC
Confidence            36789999999987754      335665  589999999999986544   3466665543   689999999999976


Q ss_pred             ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      .+.+.. +...++..++++++++||+++.|++++|+++.+.+
T Consensus       125 ~~~i~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~  165 (258)
T 3a1s_A          125 KTGMKI-DRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYA  165 (258)
T ss_dssp             HTTCCB-CHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccchHH-HHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHh
Confidence            554443 47788899999999999999999999999998865

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.76  E-value=2.2e-19  Score=127.27  Aligned_cols=113  Identities=19%  Similarity=0.197  Sum_probs=83.5

Q ss_pred             eEEEECCeEEEEEEEeCCCchhhhh------h--hHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEE
Q 043745           10 CDFQVEGRTIKAQIWDTAGQERYRA------I--TSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMI   81 (174)
Q Consensus        10 ~~~~~~~~~~~l~l~D~~G~~~~~~------~--~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv   81 (174)
                      ..+.+++.  .+.+|||+|++++..      .  ...+++++|++++|||+++..++. ...|+..+......++|+++|
T Consensus        45 ~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv  121 (172)
T 2gj8_A           45 EHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVV  121 (172)
T ss_dssp             EEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEE
T ss_pred             EEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEE
Confidence            45566664  478999999865321      1  124688999999999999988876 347777776655457999999


Q ss_pred             EeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           82 GNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        82 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      +||+|+.+...       .++...+.+++++||+++.|++++|+++.+.+.
T Consensus       122 ~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~  165 (172)
T 2gj8_A          122 RNKADITGETL-------GMSEVNGHALIRLSARTGEGVDVLRNHLKQSMG  165 (172)
T ss_dssp             EECHHHHCCCC-------EEEEETTEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred             EECccCCcchh-------hhhhccCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence            99999954211       112224678999999999999999999987653

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.76  E-value=8.8e-19  Score=133.07  Aligned_cols=111  Identities=18%  Similarity=0.159  Sum_probs=87.6

Q ss_pred             EECCeEEEEEEEeCCCchhhh------hhhHHhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 043745           13 QVEGRTIKAQIWDTAGQERYR------AITSAYYR--GALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNK   84 (174)
Q Consensus        13 ~~~~~~~~l~l~D~~G~~~~~------~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK   84 (174)
                      .++. ...+.+|||||+..+.      .++..|+.  ++|++++|||+++.+++   ..|...+..   .++|+++++||
T Consensus        44 ~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK  116 (272)
T 3b1v_A           44 LVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNM  116 (272)
T ss_dssp             ECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEEC
T ss_pred             EEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEC
Confidence            3444 5678999999998775      45677776  69999999999886544   456665554   26899999999


Q ss_pred             CCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           85 TDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        85 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      +|+.+.+.+. .+...++..++++++++||+++.|++++|+++.+.+
T Consensus       117 ~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~  162 (272)
T 3b1v_A          117 IDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTT  162 (272)
T ss_dssp             HHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred             hhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence            9997544444 356788888999999999999999999999987653

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.76  E-value=2.8e-18  Score=119.29  Aligned_cols=109  Identities=16%  Similarity=0.093  Sum_probs=80.6

Q ss_pred             EEECCeEEEEEEEeCCCchh-------hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 043745           12 FQVEGRTIKAQIWDTAGQER-------YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNK   84 (174)
Q Consensus        12 ~~~~~~~~~l~l~D~~G~~~-------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK   84 (174)
                      +.+++  ..+.+|||+|++.       +...+..+++.+|++++|||+++..+...  .|+..+...  .+.|+++|+||
T Consensus        44 ~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK  117 (161)
T 2dyk_A           44 VETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATK  117 (161)
T ss_dssp             EEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEEC
T ss_pred             EEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEEC
Confidence            33444  3678999999887       45667788999999999999998643322  222222222  26899999999


Q ss_pred             CCCCCccCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHH
Q 043745           85 TDLKHLRAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        85 ~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      +|+.+.+    ++..+++ .++. +++++||+++.|++++|+++.+.+
T Consensus       118 ~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          118 VDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL  160 (161)
T ss_dssp             CCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred             cccccch----HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence            9997642    3344555 6777 899999999999999999998764

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.73  E-value=2.4e-18  Score=129.63  Aligned_cols=110  Identities=18%  Similarity=0.125  Sum_probs=83.6

Q ss_pred             EEECCeEEEEEEEeCCCchhhhh----------hhHHhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE
Q 043745           12 FQVEGRTIKAQIWDTAGQERYRA----------ITSAYY--RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM   79 (174)
Q Consensus        12 ~~~~~~~~~l~l~D~~G~~~~~~----------~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii   79 (174)
                      +.+++  ..+.||||||+..+..          +...++  .++|++|+|+|+++.+++..+..|   +..   .++|++
T Consensus        43 ~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~---l~~---~~~pvi  114 (256)
T 3iby_A           43 FLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQ---LFE---LGKPVV  114 (256)
T ss_dssp             EEETT--EEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHH---HTT---SCSCEE
T ss_pred             EEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHH---HHH---cCCCEE
Confidence            34455  3789999999977653          566777  899999999999986655544333   332   268999


Q ss_pred             EEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745           80 MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        80 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      +|+||+|+.+.+.+.. ....+...++++++++||+++.|++++|+++.+.
T Consensus       115 lv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          115 VALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             EEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred             EEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            9999999865443322 3456788889999999999999999999988765

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.72  E-value=3e-17  Score=132.87  Aligned_cols=118  Identities=15%  Similarity=0.127  Sum_probs=91.5

Q ss_pred             EEEECCeEEEEEEEeCCC----------chhhhhhhHH-hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE
Q 043745           11 DFQVEGRTIKAQIWDTAG----------QERYRAITSA-YYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM   79 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G----------~~~~~~~~~~-~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii   79 (174)
                      .+.+++.  .+.||||+|          ++.|...+.. +++.+|++++|+|+++.-+. ....|+..+..   .++|++
T Consensus       237 ~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~-~~~~~~~~~~~---~~~~~i  310 (456)
T 4dcu_A          237 SFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIE-QDKRIAGYAHE---AGKAVV  310 (456)
T ss_dssp             EEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH---TTCEEE
T ss_pred             EEEECCc--eEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCH-HHHHHHHHHHH---cCCCEE
Confidence            3445554  689999999          7888777664 78999999999999875332 22345555544   368999


Q ss_pred             EEEeCCCCCCccCCCHHHHHHHHHHh-----CCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           80 MIGNKTDLKHLRAVATEDAQSYAERE-----GLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        80 lv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      +|+||+|+.+.+....++..+.+.+.     +.+++++||++|.|++++|+++.+.+...
T Consensus       311 lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~  370 (456)
T 4dcu_A          311 IVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENH  370 (456)
T ss_dssp             EEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             EEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence            99999999876666667777776665     47999999999999999999999877554

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.72  E-value=2.6e-17  Score=132.58  Aligned_cols=116  Identities=15%  Similarity=0.121  Sum_probs=87.9

Q ss_pred             EECCeEEEEEEEeCCCc----------hhhhhhhH-HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEE
Q 043745           13 QVEGRTIKAQIWDTAGQ----------ERYRAITS-AYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMI   81 (174)
Q Consensus        13 ~~~~~~~~l~l~D~~G~----------~~~~~~~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv   81 (174)
                      .+++.  .+.||||+|+          +.|..++. .+++.+|++++|||+++..+++.. .|+..+..   .+.|+++|
T Consensus       219 ~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv  292 (436)
T 2hjg_A          219 TYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIV  292 (436)
T ss_dssp             EETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEE
T ss_pred             EECCe--EEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEE
Confidence            34553  4899999998          66665554 488999999999999998887775 57666654   36899999


Q ss_pred             EeCCCCCCccCCCHHHHH-HHHHHh----CCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           82 GNKTDLKHLRAVATEDAQ-SYAERE----GLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        82 ~nK~Dl~~~~~~~~~~~~-~~~~~~----~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      +||+|+.+.+....++.. ++...+    +.+++++||++|.|++++|+.+.+.+...
T Consensus       293 ~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~  350 (436)
T 2hjg_A          293 VNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENH  350 (436)
T ss_dssp             EECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             EECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHh
Confidence            999999865554433332 223332    57999999999999999999998887653

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.71  E-value=1.3e-17  Score=119.67  Aligned_cols=108  Identities=15%  Similarity=0.168  Sum_probs=81.5

Q ss_pred             EEEEEeCCC----------chhhhhhhHHhhccC---CEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 043745           20 KAQIWDTAG----------QERYRAITSAYYRGA---LGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTD   86 (174)
Q Consensus        20 ~l~l~D~~G----------~~~~~~~~~~~~~~~---d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D   86 (174)
                      .+.||||+|          ++.|..++..+++.+   |++++|+|+++..++.... ++..+..   .+.|+++|+||+|
T Consensus        70 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~D  145 (195)
T 1svi_A           70 ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKAD  145 (195)
T ss_dssp             TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGG
T ss_pred             cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcc
Confidence            479999999          888888899999888   9999999999887776542 2222222   3689999999999


Q ss_pred             CCCccCCCH--HHHHH-HHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           87 LKHLRAVAT--EDAQS-YAEREGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        87 l~~~~~~~~--~~~~~-~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      +.+.+.+..  +++++ ++...+.+++++||+++.|++++|+++.+.+
T Consensus       146 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          146 KIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             GSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence            976544322  22222 2222357899999999999999999998765

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.71  E-value=2e-18  Score=126.28  Aligned_cols=101  Identities=21%  Similarity=0.288  Sum_probs=77.6

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhcc----CCEEEEEEeCC-ChhhHHHHHHHHHHHHhh----cCCCCeEEEEEeCCCCCC
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRG----ALGALLVYDVT-KPTTFENVSRWLKELRDH----ADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~----~d~ii~v~d~~-~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~Dl~~   89 (174)
                      +.+.+|||+|++.++..+..+++.    +|++|+|||++ +.+++..+..|+..+...    ...++|+++|+||+|+..
T Consensus        55 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  134 (218)
T 1nrj_B           55 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT  134 (218)
T ss_dssp             SSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred             ceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcc
Confidence            468999999999999999999987    89999999999 888999998888887654    234799999999999987


Q ss_pred             ccCCC------HHHHHHHHHHhCCcEEEEeccCCCC
Q 043745           90 LRAVA------TEDAQSYAEREGLSFIETSALEAIN  119 (174)
Q Consensus        90 ~~~~~------~~~~~~~~~~~~~~~~~~Sa~~~~~  119 (174)
                      .+.+.      .+++..++...+..++++||+++.+
T Consensus       135 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~  170 (218)
T 1nrj_B          135 ARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE  170 (218)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence            55443      4556777777788999999998865

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.71  E-value=1.6e-17  Score=118.93  Aligned_cols=107  Identities=20%  Similarity=0.301  Sum_probs=82.6

Q ss_pred             EEEEEeCCC----------chhhhhhhHHhhccC---CEEEEEEeCCChhh--HHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 043745           20 KAQIWDTAG----------QERYRAITSAYYRGA---LGALLVYDVTKPTT--FENVSRWLKELRDHADSNIVIMMIGNK   84 (174)
Q Consensus        20 ~l~l~D~~G----------~~~~~~~~~~~~~~~---d~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piilv~nK   84 (174)
                      .+.+|||+|          ++.|..++..+++.+   |++++|+|+++..+  ...+..|+...      ++|+++|+||
T Consensus        69 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK  142 (195)
T 3pqc_A           69 KYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTK  142 (195)
T ss_dssp             TEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEEC
T ss_pred             cEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEC
Confidence            478999999          778888888888877   99999999987533  33344454432      6899999999


Q ss_pred             CCCCCcc--CCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           85 TDLKHLR--AVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        85 ~Dl~~~~--~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      +|+.+..  ....++++.++...+ ++++++||+++.|++++|+++.+.+.
T Consensus       143 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          143 MDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             GGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             hhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence            9997532  233355566666644 79999999999999999999988764

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.70  E-value=5.4e-17  Score=131.84  Aligned_cols=109  Identities=17%  Similarity=0.086  Sum_probs=72.7

Q ss_pred             EEEEEEeCCCchhhhhhh--------HHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           19 IKAQIWDTAGQERYRAIT--------SAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~--------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      +.+.||||+|++++...+        ..+++.+|++++|||+++..++..+..+...+....  ++|+++|+||+|+...
T Consensus       281 ~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~  358 (476)
T 3gee_A          281 TMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAAN  358 (476)
T ss_dssp             EEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTT
T ss_pred             eEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCc
Confidence            568999999998776543        346889999999999999887754433333332222  6899999999999764


Q ss_pred             cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      ...   ..+.+......+++++||+++.|++++|+++.+.+.
T Consensus       359 ~~~---~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          359 ADA---LIRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             THH---HHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred             cch---hHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence            432   223444442478999999999999999999988765

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.68  E-value=1.1e-17  Score=127.04  Aligned_cols=106  Identities=15%  Similarity=0.089  Sum_probs=79.7

Q ss_pred             EEEEEEeCCCchhhh----------hhhHHhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 043745           19 IKAQIWDTAGQERYR----------AITSAYY--RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTD   86 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~----------~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D   86 (174)
                      ..+.||||||+..+.          ..+..++  ..+|++++|+|+++.+....+   ...+...   ++|+++|+||+|
T Consensus        50 ~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~---~~~l~~~---~~p~ivv~NK~D  123 (274)
T 3i8s_A           50 HQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYL---TLQLLEL---GIPCIVALNMLD  123 (274)
T ss_dssp             CEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHH---HHHHHHH---TCCEEEEEECHH
T ss_pred             CceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHH---HHHHHhc---CCCEEEEEECcc
Confidence            457899999988765          2234443  699999999999986655443   3334333   689999999999


Q ss_pred             CCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           87 LKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        87 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      +.+.+.+. .....++..++++++++||++|.|++++|+++.+.+
T Consensus       124 l~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~  167 (274)
T 3i8s_A          124 IAEKQNIR-IEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYK  167 (274)
T ss_dssp             HHHHTTEE-ECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred             chhhhhHH-HHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            86543321 235677888999999999999999999999886654

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.68  E-value=2.9e-16  Score=123.40  Aligned_cols=113  Identities=17%  Similarity=0.257  Sum_probs=89.2

Q ss_pred             EEEEEEeCCCchhhh---------hhhHHhhccCCEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745           19 IKAQIWDTAGQERYR---------AITSAYYRGALGALLVYDVTKPT--TFENVSRWLKELRDHADSNIVIMMIGNKTDL   87 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~---------~~~~~~~~~~d~ii~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl   87 (174)
                      ..+.+|||+|...+.         .....+...+|++++|+|+++..  ++.....|+..+..... +.|+++|+||+|+
T Consensus       214 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl  292 (357)
T 2e87_A          214 FRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDV  292 (357)
T ss_dssp             EEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTT
T ss_pred             ceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECccc
Confidence            468999999985431         12223455799999999999877  77888889888876554 6899999999999


Q ss_pred             CCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           88 KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      .....+  ++...++...+++++++||++|+|++++|+++.+.+...
T Consensus       293 ~~~~~~--~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          293 ADEENI--KRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             CCHHHH--HHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             CChHHH--HHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence            764332  456666777889999999999999999999999888654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.68  E-value=3.2e-16  Score=126.27  Aligned_cols=104  Identities=21%  Similarity=0.280  Sum_probs=77.4

Q ss_pred             EEEEEeCCCchh---------hhhhhHHhhccCCEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745           20 KAQIWDTAGQER---------YRAITSAYYRGALGALLVYDVTKPTTFEN--VSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus        20 ~l~l~D~~G~~~---------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      .+.||||+|.+.         +...+..+++++|+++||||+.+..+...  +..|+..   .   ++|+++|+||+|+.
T Consensus        50 ~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~---~---~~p~ilv~NK~D~~  123 (439)
T 1mky_A           50 TFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRK---S---TVDTILVANKAENL  123 (439)
T ss_dssp             EEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHH---H---TCCEEEEEESCCSH
T ss_pred             EEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH---c---CCCEEEEEeCCCCc
Confidence            578999999764         34567788999999999999987644432  3334332   1   68999999999986


Q ss_pred             CccCCCHHHH-HHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           89 HLRAVATEDA-QSYAEREGL-SFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        89 ~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      +.  . ..+. .++. .+++ +++++||++|.|++++|+++.+.+..
T Consensus       124 ~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~  166 (439)
T 1mky_A          124 RE--F-EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEE  166 (439)
T ss_dssp             HH--H-HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cc--c-HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhccc
Confidence            42  1 1222 4443 5676 78999999999999999999988764

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.67  E-value=1.2e-16  Score=121.15  Aligned_cols=108  Identities=20%  Similarity=0.104  Sum_probs=84.0

Q ss_pred             EEEEEEeCCCchhhhh------hhHHhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           19 IKAQIWDTAGQERYRA------ITSAYY--RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~------~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      ..+.||||||+..+..      .+..|+  .++|++++|+|+++.+   ....|+..+....  ..|+++++||+|+.+.
T Consensus        50 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~  124 (271)
T 3k53_A           50 KEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLM---RNLFLTLELFEME--VKNIILVLNKFDLLKK  124 (271)
T ss_dssp             EEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHHTT--CCSEEEEEECHHHHHH
T ss_pred             ceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcch---hhHHHHHHHHhcC--CCCEEEEEEChhcCcc
Confidence            4589999999987765      566676  6899999999998853   3334445554432  3899999999998654


Q ss_pred             cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      +.+.. ....++..++++++++||+++.|++++|+.+.+.+.
T Consensus       125 ~~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~  165 (271)
T 3k53_A          125 KGAKI-DIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAE  165 (271)
T ss_dssp             HTCCC-CHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred             cccHH-HHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence            43333 277788899999999999999999999999988753

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.67  E-value=9.2e-17  Score=125.48  Aligned_cols=110  Identities=13%  Similarity=0.168  Sum_probs=89.0

Q ss_pred             EEEEEEeCCCchh----hhhhhHHhhc---cCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcC--CCCeEEEEEeCCC
Q 043745           19 IKAQIWDTAGQER----YRAITSAYYR---GALGALLVYDVTK---PTTFENVSRWLKELRDHAD--SNIVIMMIGNKTD   86 (174)
Q Consensus        19 ~~l~l~D~~G~~~----~~~~~~~~~~---~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~D   86 (174)
                      ..+.||||||+..    +..+...|++   .+|++|+|+|+++   +++++.+..|+..+..+..  .++|+++|+||+|
T Consensus       206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~D  285 (342)
T 1lnz_A          206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMD  285 (342)
T ss_dssp             CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTT
T ss_pred             ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECcc
Confidence            4689999999643    3445555655   5999999999998   7889999999999887653  4799999999999


Q ss_pred             CCCccCCCHHHHHHHHHHhC--CcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           87 LKHLRAVATEDAQSYAEREG--LSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        87 l~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      +...+    +..++++..++  .+++++||+++.|+++++++|.+.+.
T Consensus       286 l~~~~----e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~  329 (342)
T 1lnz_A          286 MPEAA----ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLE  329 (342)
T ss_dssp             STTHH----HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred             CCCCH----HHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHh
Confidence            97532    45667777776  68999999999999999999988764

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.66  E-value=1.3e-15  Score=126.57  Aligned_cols=112  Identities=20%  Similarity=0.296  Sum_probs=92.8

Q ss_pred             CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCC
Q 043745           15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVA   94 (174)
Q Consensus        15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~   94 (174)
                      ++..+.++||||||+.+|...+..++..+|++|+|+|+++..+++....|...+.    .++|+++++||+|+...+  .
T Consensus        67 ~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~  140 (599)
T 3cb4_D           67 DGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--P  140 (599)
T ss_dssp             TSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--H
T ss_pred             CCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--H
Confidence            5667899999999999999999999999999999999999877777777765543    268999999999997632  2


Q ss_pred             HHHHHHHHHHhCC---cEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           95 TEDAQSYAEREGL---SFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        95 ~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      .....++...+++   +++++||+++.|++++|+++.+.+.
T Consensus       141 ~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp  181 (599)
T 3cb4_D          141 ERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIP  181 (599)
T ss_dssp             HHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCC
Confidence            3445667777776   4999999999999999998887653

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.66  E-value=9.6e-17  Score=123.48  Aligned_cols=107  Identities=19%  Similarity=0.197  Sum_probs=78.5

Q ss_pred             EEEEEEEeCCCchh--------hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHH-HHHHhhcCCCCeEEEEEeCCCCC
Q 043745           18 TIKAQIWDTAGQER--------YRAITSAYYRGALGALLVYDVTKPTTFENVSRWL-KELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus        18 ~~~l~l~D~~G~~~--------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      ..++.||||||+.+        +......+++.+|++++|||+++..+..  ..|+ ..+.... .+.|+++|+||+|+.
T Consensus        54 ~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~  130 (301)
T 1wf3_A           54 RRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAA  130 (301)
T ss_dssp             TEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGC
T ss_pred             CcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccC
Confidence            46789999999876        5566778899999999999999864443  3444 4454432 368999999999997


Q ss_pred             CccCCCHHHHHHHHHHh-C-CcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           89 HLRAVATEDAQSYAERE-G-LSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        89 ~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      ..+.    +..+.+..+ + .+++++||+++.|++++|+.+.+.+
T Consensus       131 ~~~~----~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l  171 (301)
T 1wf3_A          131 KYPE----EAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM  171 (301)
T ss_dssp             SSHH----HHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             CchH----HHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence            5322    022333332 3 4789999999999999999887654

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.66  E-value=6.8e-16  Score=125.50  Aligned_cols=113  Identities=25%  Similarity=0.269  Sum_probs=84.6

Q ss_pred             EEEECCeEEEEEEEeCCCch-hhhh--------hhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEE
Q 043745           11 DFQVEGRTIKAQIWDTAGQE-RYRA--------ITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMI   81 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~-~~~~--------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv   81 (174)
                      .+.+++  ..+.||||+|+. .+..        ....+++.+|++|+|||+++..+++... ++..+     .+.|+++|
T Consensus       285 ~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV  356 (482)
T 1xzp_A          285 EIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVV  356 (482)
T ss_dssp             EEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEE
T ss_pred             EEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEE
Confidence            455665  468999999988 5532        2456789999999999999887776543 33332     26899999


Q ss_pred             EeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           82 GNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        82 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      +||+|+.+.  +..+++..++. .+.+++++||+++.|++++++++.+.+...
T Consensus       357 ~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~Gi~eL~~~l~~~~~~~  406 (482)
T 1xzp_A          357 INKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEGLEKLEESIYRETQEI  406 (482)
T ss_dssp             EEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCCHHHHHHHHHHHTHHH
T ss_pred             EECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCCHHHHHHHHHHHHhhh
Confidence            999999752  44455544432 346899999999999999999999987643

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.65  E-value=9.8e-17  Score=128.46  Aligned_cols=106  Identities=19%  Similarity=0.171  Sum_probs=85.1

Q ss_pred             EEEEEeCCCchhhhhh-------hHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC
Q 043745           20 KAQIWDTAGQERYRAI-------TSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA   92 (174)
Q Consensus        20 ~l~l~D~~G~~~~~~~-------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~   92 (174)
                      .+.||||+|+++|..+       ...++.++|++|+|||++..+.   ...|+..+...   ++|+++|+||+|+...+.
T Consensus        84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~~---~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~  157 (423)
T 3qq5_A           84 PVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPY---EDDVVNLFKEM---EIPFVVVVNKIDVLGEKA  157 (423)
T ss_dssp             EEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCHH---HHHHHHHHHHT---TCCEEEECCCCTTTTCCC
T ss_pred             eEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCChHH---HHHHHHHHHhc---CCCEEEEEeCcCCCCccH
Confidence            6899999999877654       4568899999999999944332   35566666654   689999999999987554


Q ss_pred             CCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           93 VATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      .  +..+++++.++++++++||+++.|++++|+++.+.+..
T Consensus       158 ~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~  196 (423)
T 3qq5_A          158 E--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPG  196 (423)
T ss_dssp             T--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCC
T ss_pred             H--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            3  56677777788999999999999999999999887643

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.64  E-value=2.3e-15  Score=125.04  Aligned_cols=112  Identities=28%  Similarity=0.371  Sum_probs=92.5

Q ss_pred             CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCC
Q 043745           15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVA   94 (174)
Q Consensus        15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~   94 (174)
                      ++..+.++||||||+.+|...+..++..+|++|+|+|+++..+.+....|.....    .++|+++++||+|+....  .
T Consensus        69 dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~  142 (600)
T 2ywe_A           69 DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--V  142 (600)
T ss_dssp             TSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--H
T ss_pred             CCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--H
Confidence            5667899999999999999999999999999999999999887877777765442    268999999999997632  2


Q ss_pred             HHHHHHHHHHhCC---cEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           95 TEDAQSYAEREGL---SFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        95 ~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      .....++...+++   +++++||++|.|++++|+++++.+.
T Consensus       143 ~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp  183 (600)
T 2ywe_A          143 DRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIP  183 (600)
T ss_dssp             HHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence            3445666676776   4899999999999999999887653

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.63  E-value=1.6e-15  Score=111.01  Aligned_cols=116  Identities=19%  Similarity=0.174  Sum_probs=81.1

Q ss_pred             CeEEEEEEEeCCC----------chhhhhhhHHhhcc---CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEE
Q 043745           16 GRTIKAQIWDTAG----------QERYRAITSAYYRG---ALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIG   82 (174)
Q Consensus        16 ~~~~~l~l~D~~G----------~~~~~~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~   82 (174)
                      .....+.||||||          ++.|..++..++..   +|++++|+|+++..+.. ...|+..+..   .++|+++|+
T Consensus        76 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~---~~~p~i~v~  151 (223)
T 4dhe_A           76 AAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP---TGKPIHSLL  151 (223)
T ss_dssp             TTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG---GCCCEEEEE
T ss_pred             CCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh---cCCCEEEEE
Confidence            3346789999999          46667778888877   77899999998753322 2345555544   268999999


Q ss_pred             eCCCCCCccCCC--HHHHHHHHHH-------hCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745           83 NKTDLKHLRAVA--TEDAQSYAER-------EGLSFIETSALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus        83 nK~Dl~~~~~~~--~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                      ||+|+.....+.  .++..+....       .+.+++++||+++.|++++|++|.+.+....
T Consensus       152 nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~  213 (223)
T 4dhe_A          152 TKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA  213 (223)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred             eccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence            999997643321  1222233333       4568999999999999999999998875543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.62  E-value=2e-16  Score=127.43  Aligned_cols=105  Identities=12%  Similarity=0.146  Sum_probs=72.7

Q ss_pred             EEEEEEeCCCch--------hhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           19 IKAQIWDTAGQE--------RYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        19 ~~l~l~D~~G~~--------~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      ..+.||||+|++        .+...+..+++.+|++|||+|+.+..++..  .|+..+...  .++|+++|+||+|+.+.
T Consensus        51 ~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~--~~~pvilv~NK~D~~~~  126 (436)
T 2hjg_A           51 YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEM  126 (436)
T ss_dssp             SCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHTT--CCSCEEEEEECCCC---
T ss_pred             ceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCccc
Confidence            458999999986        677788889999999999999998766543  333333222  36899999999999753


Q ss_pred             cCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           91 RAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      +.    +..++. .+++ +++++||++|.|++++++++.+.+.
T Consensus       127 ~~----~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~  164 (436)
T 2hjg_A          127 RA----NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFK  164 (436)
T ss_dssp             ------CCCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred             hh----hHHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhcC
Confidence            21    112222 4565 7899999999999999999987764

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.61  E-value=5.5e-15  Score=117.91  Aligned_cols=111  Identities=19%  Similarity=0.207  Sum_probs=86.9

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC--CHH
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV--ATE   96 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~   96 (174)
                      ..+.||||||+++|...+..++..+|++|+|+|+++..++....+|+..+....  ..|+++++||+|+.+....  ..+
T Consensus        75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~  152 (403)
T 3sjy_A           75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYR  152 (403)
T ss_dssp             EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHH
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHH
Confidence            679999999999999999999999999999999998776777777877665543  3589999999999753221  112


Q ss_pred             HHHHHHHHh---CCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           97 DAQSYAERE---GLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        97 ~~~~~~~~~---~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      +..++....   +++++++||+++.|++++++++.+.+
T Consensus       153 ~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l  190 (403)
T 3sjy_A          153 QIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  190 (403)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence            223333222   46899999999999999999887654

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.59  E-value=2.3e-15  Score=118.86  Aligned_cols=115  Identities=10%  Similarity=-0.036  Sum_probs=85.8

Q ss_pred             ECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeE-EEEEe-CCCCCCcc
Q 043745           14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVI-MMIGN-KTDLKHLR   91 (174)
Q Consensus        14 ~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~n-K~Dl~~~~   91 (174)
                      +......+.||||||+++|.......+..+|++|+|+| + ...+....+|+..+...   ++|. ++++| |+|+ +.+
T Consensus        55 ~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~-~g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~  128 (370)
T 2elf_A           55 NDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P-QGLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMH  128 (370)
T ss_dssp             ECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T-TCCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHH
T ss_pred             EecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C-CCCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHH
Confidence            33344569999999999998888888899999999999 4 34455556666655543   4666 88889 9999 533


Q ss_pred             CCCH--HHHHHHHHHhC---CcEEE--EeccC---CCCHHHHHHHHHHHHHHH
Q 043745           92 AVAT--EDAQSYAEREG---LSFIE--TSALE---AINVEKAFQTILSEIYRI  134 (174)
Q Consensus        92 ~~~~--~~~~~~~~~~~---~~~~~--~Sa~~---~~~i~~v~~~l~~~i~~~  134 (174)
                      .+..  +++++++...+   +++++  +||++   +.|++++++.+.+.+...
T Consensus       129 ~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~  181 (370)
T 2elf_A          129 AIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKI  181 (370)
T ss_dssp             HHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhcccc
Confidence            2221  44555555443   68999  99999   999999999999887654

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.59  E-value=2.5e-15  Score=121.68  Aligned_cols=111  Identities=19%  Similarity=0.192  Sum_probs=73.0

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhH--------HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEE
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITS--------AYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIG   82 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~--------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~   82 (174)
                      .+.+++  ..+.||||+|+..+...+.        .++..+|++++|||+++..+... ..|+..+.     ..|+++|+
T Consensus       266 ~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~  337 (462)
T 3geh_A          266 QLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVM  337 (462)
T ss_dssp             EEEETT--EEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEE
T ss_pred             EEEECC--EEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEE
Confidence            456666  4679999999876654333        36789999999999998766554 45555542     36999999


Q ss_pred             eCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           83 NKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        83 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      ||+|+.....+.  ..+.+.  .+.+++++||+++.|++++++++.+.+..
T Consensus       338 NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~~~~  384 (462)
T 3geh_A          338 NKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQGIDSLETAILEIVQT  384 (462)
T ss_dssp             ECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBSHHHHHHHHHHHHTT
T ss_pred             ECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            999997654432  111111  35689999999999999999999887643

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.57  E-value=4.2e-15  Score=114.37  Aligned_cols=97  Identities=14%  Similarity=0.097  Sum_probs=81.3

Q ss_pred             chhhhhhhHHhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCC-HHHHHHHHHHhC
Q 043745           29 QERYRAITSAYYRGALGALLVYDVTKPT-TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVA-TEDAQSYAEREG  106 (174)
Q Consensus        29 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~  106 (174)
                      ++++..+.+.++.++|++++|||+++++ ++..+..|+..+..   .++|+++|+||+||.+..++. .++..+++..++
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g  142 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG  142 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence            7788888889999999999999999986 89989999987655   368999999999997643222 345666777789


Q ss_pred             CcEEEEeccCCCCHHHHHHHHH
Q 043745          107 LSFIETSALEAINVEKAFQTIL  128 (174)
Q Consensus       107 ~~~~~~Sa~~~~~i~~v~~~l~  128 (174)
                      ++++++||+++.|++++++.+.
T Consensus       143 ~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          143 YDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             CEEEECCTTTCTTHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHhhcc
Confidence            9999999999999999998764

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.56  E-value=5.3e-14  Score=110.78  Aligned_cols=121  Identities=20%  Similarity=0.141  Sum_probs=85.5

Q ss_pred             EEEECCeEEEEEEEeCCCc---------hhhhhhhHHhhccCCEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCeEE
Q 043745           11 DFQVEGRTIKAQIWDTAGQ---------ERYRAITSAYYRGALGALLVYDVTKPT--TFENVSRWLKELRDHADSNIVIM   79 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~---------~~~~~~~~~~~~~~d~ii~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~pii   79 (174)
                      .+.+++  ..+.+|||+|.         +.|...+. .+..+|++++|+|++++.  ....+..|...+......+.|++
T Consensus       220 ~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~i  296 (364)
T 2qtf_A          220 AIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPIL  296 (364)
T ss_dssp             EEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEE
T ss_pred             EEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEE
Confidence            455666  45799999996         23444443 578999999999999876  56666666665555443578999


Q ss_pred             EEEeCCCCCCccCC-CHHHHHHHHHHh---CCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           80 MIGNKTDLKHLRAV-ATEDAQSYAERE---GLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        80 lv~nK~Dl~~~~~~-~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      +|+||+|+...... ..+.+..++..+   +.+++++||+++.|++++++++.+.+...
T Consensus       297 lV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          297 VTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQL  355 (364)
T ss_dssp             EEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence            99999999653210 011233344555   24689999999999999999998876654

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.55  E-value=3.9e-14  Score=113.16  Aligned_cols=107  Identities=22%  Similarity=0.229  Sum_probs=75.5

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCC----hhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC--
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTK----PTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA--   92 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~--   92 (174)
                      ..+.||||||+++|...+...+..+|++|+|+|+++    .++++.+..    +....  ..|+++++||+|+.+...  
T Consensus        81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~l~--~~~iivv~NK~Dl~~~~~~~  154 (408)
T 1s0u_A           81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----LEILG--IDKIIIVQNKIDLVDEKQAE  154 (408)
T ss_dssp             EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HHHTT--CCCEEEEEECTTSSCTTTTT
T ss_pred             cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HHHcC--CCeEEEEEEccCCCCHHHHH
Confidence            679999999999998888888888999999999995    344444432    22221  357999999999976433  


Q ss_pred             CCHHHHHHHHHHh---CCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           93 VATEDAQSYAERE---GLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        93 ~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      ...+++++++...   +++++++||+++.|+++++++|.+.+
T Consensus       155 ~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i  196 (408)
T 1s0u_A          155 ENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI  196 (408)
T ss_dssp             THHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            2345566666543   57899999999999999999887654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.55  E-value=8.2e-14  Score=112.24  Aligned_cols=117  Identities=21%  Similarity=0.183  Sum_probs=79.1

Q ss_pred             EEECCeEEEEEEEeCCCchhhhhh------------hHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE
Q 043745           12 FQVEGRTIKAQIWDTAGQERYRAI------------TSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM   79 (174)
Q Consensus        12 ~~~~~~~~~l~l~D~~G~~~~~~~------------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii   79 (174)
                      +.+++.  .+.+|||+|..++...            ...+++.+|++++++|+++..+.... .+...+..   .+.|++
T Consensus       223 i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~i  296 (439)
T 1mky_A          223 VFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASV  296 (439)
T ss_dssp             EEETTE--EEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEE
T ss_pred             EEECCE--EEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEE
Confidence            445664  4789999998543321            13567889999999999986665542 23333322   268999


Q ss_pred             EEEeCCCCCCccCCCHHHHHH-HHHHh----CCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           80 MIGNKTDLKHLRAVATEDAQS-YAERE----GLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        80 lv~nK~Dl~~~~~~~~~~~~~-~~~~~----~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      +++||+|+.+.+....++..+ +...+    +.+++++||++|.|++++|+.+.+.+...
T Consensus       297 lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          297 VVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             EEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            999999997654444444332 22332    47899999999999999999998876553

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.55  E-value=5.6e-15  Score=113.59  Aligned_cols=109  Identities=16%  Similarity=0.137  Sum_probs=77.5

Q ss_pred             EEEEEEEeCCCch-h--------hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745           18 TIKAQIWDTAGQE-R--------YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus        18 ~~~l~l~D~~G~~-~--------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      ...+.||||||+. .        +......+++.+|+++||+|+++   +.....|+.....  ..+.|+++++||+|+.
T Consensus        55 ~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~  129 (301)
T 1ega_A           55 AYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNV  129 (301)
T ss_dssp             TEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTC
T ss_pred             CeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccC
Confidence            3578999999987 3        23334567789999999999976   3333334433222  2368999999999997


Q ss_pred             CccCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHH
Q 043745           89 HLRAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      ..+....+.+.++...++. .++++||+++.|++++++.+.+.+
T Consensus       130 ~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l  173 (301)
T 1ega_A          130 QEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL  173 (301)
T ss_dssp             CCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred             ccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhC
Confidence            5222223445556666675 699999999999999999887653

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.53  E-value=5.4e-14  Score=115.57  Aligned_cols=74  Identities=22%  Similarity=0.178  Sum_probs=59.4

Q ss_pred             EEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        12 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      +.+....+.++||||||+++|...+..+++.+|++|+|+|+++..+......| ..+..   .++|+++|+||+|+..
T Consensus        75 ~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~---~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           75 MQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL---RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             EEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT---TTCCEEEEEECTTSCC
T ss_pred             EEEEeCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEeCCCCcc
Confidence            33434457899999999999999999999999999999999987766665555 33333   2689999999999964

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.53  E-value=4e-14  Score=115.32  Aligned_cols=111  Identities=14%  Similarity=0.077  Sum_probs=74.7

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHH------HHHHHHHHHhhcCCCCeEEEEEeC
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFEN------VSRWLKELRDHADSNIVIMMIGNK   84 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~------~~~~~~~i~~~~~~~~piilv~nK   84 (174)
                      ...++.....+.||||||+++|...+..++..+|++|+|+|+++.+++..      ..+.+..+... . ..|+|+++||
T Consensus       103 ~~~~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~-~~~iIvviNK  180 (483)
T 3p26_A          103 TSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-G-IHNLIIAMNK  180 (483)
T ss_dssp             EEEEECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-T-CCCEEEEEEC
T ss_pred             eEEEecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-C-CCcEEEEEEC
Confidence            33455556789999999999999999999999999999999998654322      22222222222 1 2469999999


Q ss_pred             CCCCCccCCCHH----HHHHHHHHhC-----CcEEEEeccCCCCHHHH
Q 043745           85 TDLKHLRAVATE----DAQSYAEREG-----LSFIETSALEAINVEKA  123 (174)
Q Consensus        85 ~Dl~~~~~~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~~i~~v  123 (174)
                      +|+.+.++...+    ++..++..++     ++++++||++|.|++++
T Consensus       181 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          181 MDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             cCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence            999763322222    2334444444     57899999999998753

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.51  E-value=7e-14  Score=113.85  Aligned_cols=107  Identities=20%  Similarity=0.144  Sum_probs=83.2

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC--C
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTK---PTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA--V   93 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~--~   93 (174)
                      ..+.||||||+++|...+..++..+|++|+|+|+++   +++++.+    ..+...   ++|+++++||+|+.+...  .
T Consensus        73 ~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l----~~~~~~---~ip~IvviNK~Dl~~~~~~~~  145 (482)
T 1wb1_A           73 YRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHM----LILDHF---NIPIIVVITKSDNAGTEEIKR  145 (482)
T ss_dssp             EEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH----HHHHHT---TCCBCEEEECTTSSCHHHHHH
T ss_pred             EEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHH----HHHHHc---CCCEEEEEECCCcccchhHHH
Confidence            578999999999999999999999999999999987   4444433    223322   578899999999975321  1


Q ss_pred             CHHHHHHHHHHh----CCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           94 ATEDAQSYAERE----GLSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        94 ~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      ..+++.+++...    +.+++++||++|.|+++++++|.+.+.
T Consensus       146 ~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          146 TEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             HHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence            234455666555    578999999999999999999988775

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.51  E-value=2.4e-14  Score=114.29  Aligned_cols=104  Identities=17%  Similarity=0.139  Sum_probs=77.9

Q ss_pred             EEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCCCc
Q 043745           12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIV-IMMIGNKTDLKHL   90 (174)
Q Consensus        12 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~   90 (174)
                      +.++.....+.||||||+++|...+..++..+|++|+|+|+++.... ...+|+..+...   ++| +++++||+|+.+.
T Consensus        68 ~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~---~ip~iivviNK~Dl~~~  143 (405)
T 2c78_A           68 VEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV---GVPYIVVFMNKVDMVDD  143 (405)
T ss_dssp             EEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT---TCCCEEEEEECGGGCCC
T ss_pred             eEeccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEEECccccCc
Confidence            34444456789999999999999999999999999999999886533 345566655443   578 8999999999742


Q ss_pred             cC---CCHHHHHHHHHHhC-----CcEEEEeccCCCC
Q 043745           91 RA---VATEDAQSYAEREG-----LSFIETSALEAIN  119 (174)
Q Consensus        91 ~~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~  119 (174)
                      ..   ...++.++++..++     .+++++||+++.|
T Consensus       144 ~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          144 PELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE  180 (405)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence            21   11235666777665     5799999999977

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.51  E-value=1.4e-14  Score=103.68  Aligned_cols=75  Identities=21%  Similarity=0.358  Sum_probs=62.8

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhcc----CCEEEEEEeCC-ChhhHHHHHHHHHHHHhhc----CCCCeEEEEEeCCCCC
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRG----ALGALLVYDVT-KPTTFENVSRWLKELRDHA----DSNIVIMMIGNKTDLK   88 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~----~d~ii~v~d~~-~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~Dl~   88 (174)
                      .+.+.||||+|++.+...+..++..    +|++|+|||++ +.+++..+..|+..+....    ..++|+++|+||+|+.
T Consensus        90 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  169 (193)
T 2ged_A           90 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF  169 (193)
T ss_dssp             CTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred             CCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhc
Confidence            4568899999999998888888876    89999999999 8999999988887775432    2479999999999997


Q ss_pred             CccC
Q 043745           89 HLRA   92 (174)
Q Consensus        89 ~~~~   92 (174)
                      +.+.
T Consensus       170 ~~~~  173 (193)
T 2ged_A          170 TARP  173 (193)
T ss_dssp             TCCC
T ss_pred             CCCC
Confidence            6543

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.51  E-value=8e-14  Score=111.37  Aligned_cols=108  Identities=23%  Similarity=0.233  Sum_probs=79.8

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC-
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP----TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA-   92 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-   92 (174)
                      ...+.||||||+++|.......+..+|++|+|+|+++.    ++.+.+..    +....  ..|+++++||+|+.+... 
T Consensus        82 ~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~~--~~~iivviNK~Dl~~~~~~  155 (410)
T 1kk1_A           82 VRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQIIG--QKNIIIAQNKIELVDKEKA  155 (410)
T ss_dssp             EEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHHT--CCCEEEEEECGGGSCHHHH
T ss_pred             ccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHcC--CCcEEEEEECccCCCHHHH
Confidence            36799999999999988888888899999999999953    44444332    22222  357999999999976332 


Q ss_pred             -CCHHHHHHHHHH---hCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           93 -VATEDAQSYAER---EGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        93 -~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                       ...+++++++..   .+++++++||+++.|+++++++|.+.+
T Consensus       156 ~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~  198 (410)
T 1kk1_A          156 LENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  198 (410)
T ss_dssp             HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence             122344555543   357899999999999999999887654

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.50  E-value=1.6e-14  Score=104.62  Aligned_cols=104  Identities=11%  Similarity=0.005  Sum_probs=68.9

Q ss_pred             CCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHH---HHhhc--CCCCeEEEEEeCC-CCCCccCCCHHHHH
Q 043745           26 TAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE---LRDHA--DSNIVIMMIGNKT-DLKHLRAVATEDAQ   99 (174)
Q Consensus        26 ~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~---i~~~~--~~~~piilv~nK~-Dl~~~~~~~~~~~~   99 (174)
                      .+||+.++.+|+.||++.|++|||+|.+|.+.++ .+..+..   +....  ..++|++|++||. |++.  ..+..++.
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~  185 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA  185 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHH
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHH
Confidence            3589999999999999999999999999876444 3333322   22211  1478999999995 7864  44555543


Q ss_pred             HHHH----HhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745          100 SYAE----REGLSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus       100 ~~~~----~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      +...    ...+.+..|||.+|+|+.+.++||...+.
T Consensus       186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~  222 (227)
T 3l82_B          186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  222 (227)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred             HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence            3321    12356899999999999999999987654

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.50  E-value=6.8e-14  Score=112.72  Aligned_cols=109  Identities=18%  Similarity=0.223  Sum_probs=77.1

Q ss_pred             ECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhh---HH---HHHHHHHHHHhhcCCCCe-EEEEEeCCC
Q 043745           14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTT---FE---NVSRWLKELRDHADSNIV-IMMIGNKTD   86 (174)
Q Consensus        14 ~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iilv~nK~D   86 (174)
                      +......+.||||||+++|...+..++..+|++|||+|+++...   |+   ...+.+..+..   .++| +|+++||+|
T Consensus        90 ~~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~D  166 (439)
T 3j2k_7           90 FETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMD  166 (439)
T ss_pred             EecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCC
Confidence            34444689999999999999999999999999999999988532   21   22222222222   2466 999999999


Q ss_pred             CCCcc------CCCHHHHHHHHHHhC------CcEEEEeccCCCCHHHHHH
Q 043745           87 LKHLR------AVATEDAQSYAEREG------LSFIETSALEAINVEKAFQ  125 (174)
Q Consensus        87 l~~~~------~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~v~~  125 (174)
                      +....      ....++...++..++      ++++++||++|.|+.++++
T Consensus       167 l~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          167 DPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            95311      111234455555555      4699999999999999765

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.49  E-value=5.6e-15  Score=118.92  Aligned_cols=111  Identities=18%  Similarity=0.202  Sum_probs=81.6

Q ss_pred             ECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc----CCCC-eEEEEEeCCCCC
Q 043745           14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA----DSNI-VIMMIGNKTDLK   88 (174)
Q Consensus        14 ~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~-piilv~nK~Dl~   88 (174)
                      ++.....+.||||||+++|...+..++..+|++|+|||+++ .+|+.+..|..+...+.    ..++ |+++++||+|+.
T Consensus        79 ~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~  157 (435)
T 1jny_A           79 FETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLT  157 (435)
T ss_dssp             EECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGS
T ss_pred             EecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCC
Confidence            34445679999999999999999999999999999999998 67775544433322211    0133 689999999997


Q ss_pred             Ccc------CCCHHHHHHHHHHhC-----CcEEEEeccCCCCHHHHHH
Q 043745           89 HLR------AVATEDAQSYAEREG-----LSFIETSALEAINVEKAFQ  125 (174)
Q Consensus        89 ~~~------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~v~~  125 (174)
                      +..      ....+++++++..++     ++++++||++|.|+.+++.
T Consensus       158 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          158 EPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             SSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             CccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            521      112355677777766     6799999999999986554

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.49  E-value=2.9e-13  Score=112.51  Aligned_cols=109  Identities=22%  Similarity=0.241  Sum_probs=80.2

Q ss_pred             EEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCC--
Q 043745           20 KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTK---PTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVA--   94 (174)
Q Consensus        20 ~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~--   94 (174)
                      .++||||||+++|..++..++..+|++|+|||+++   +++++.+..    +..   .++|+++++||+|+.......  
T Consensus        71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~  143 (594)
T 1g7s_A           71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEG  143 (594)
T ss_dssp             EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccC
Confidence            48999999999999999999999999999999999   666655432    222   268999999999996421100  


Q ss_pred             -----------H---H-------HHHHHHHHhC---------------CcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745           95 -----------T---E-------DAQSYAEREG---------------LSFIETSALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus        95 -----------~---~-------~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                                 .   +       +......+.+               ++++++||++|.|++++++++...+....
T Consensus       144 ~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~  220 (594)
T 1g7s_A          144 RPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL  220 (594)
T ss_dssp             CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccc
Confidence                       0   0       1111112222               37999999999999999999998776543

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.48  E-value=7.7e-14  Score=111.05  Aligned_cols=113  Identities=17%  Similarity=0.108  Sum_probs=80.9

Q ss_pred             ECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCCCccC
Q 043745           14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIV-IMMIGNKTDLKHLRA   92 (174)
Q Consensus        14 ~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~   92 (174)
                      +......+.||||||+++|...+..++..+|++|+|+|+++....+.. +++..+...   ++| +++++||+|+.+...
T Consensus        61 ~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~~~~---~vp~iivviNK~Dl~~~~~  136 (397)
T 1d2e_A           61 YSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQI---GVEHVVVYVNKADAVQDSE  136 (397)
T ss_dssp             EECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHHT---TCCCEEEEEECGGGCSCHH
T ss_pred             eccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHH-HHHHHHHHc---CCCeEEEEEECcccCCCHH
Confidence            334446789999999999998889999999999999999985443333 333433332   578 789999999974221


Q ss_pred             ---CCHHHHHHHHHHhC-----CcEEEEeccCCCC----------HHHHHHHHHHH
Q 043745           93 ---VATEDAQSYAEREG-----LSFIETSALEAIN----------VEKAFQTILSE  130 (174)
Q Consensus        93 ---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~----------i~~v~~~l~~~  130 (174)
                         ...++.++++..++     ++++++||+++.|          +.++++.+.+.
T Consensus       137 ~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~  192 (397)
T 1d2e_A          137 MVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY  192 (397)
T ss_dssp             HHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHh
Confidence               12245667777766     5899999998764          66666665543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.48  E-value=1.8e-14  Score=116.63  Aligned_cols=105  Identities=11%  Similarity=0.140  Sum_probs=72.3

Q ss_pred             EEEEEEEeCCC--------chhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           18 TIKAQIWDTAG--------QERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        18 ~~~l~l~D~~G--------~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      ...+.+|||+|        ++.+...+..+++.+|++|||+|..+..+  ....|+..+...  .++|+++|+||+|+.+
T Consensus        70 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~--~~d~~l~~~l~~--~~~pvilV~NK~D~~~  145 (456)
T 4dcu_A           70 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVT--AADEEVAKILYR--TKKPVVLAVNKLDNTE  145 (456)
T ss_dssp             SSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSC--HHHHHHHHHHTT--CCSCEEEEEECC----
T ss_pred             CceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCC--hHHHHHHHHHHH--cCCCEEEEEECccchh
Confidence            34689999999        77888889999999999999999876432  223344433332  3789999999999864


Q ss_pred             ccCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHH
Q 043745           90 LRAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      ..    ....++. .+++ .++++||+++.|+.++++++.+.+
T Consensus       146 ~~----~~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l  183 (456)
T 4dcu_A          146 MR----ANIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHF  183 (456)
T ss_dssp             ---------CCSG-GGSSSSEEECCTTTCTTHHHHHHHHHTTG
T ss_pred             hh----hhHHHHH-HcCCCceEEeecccccchHHHHHHHHhhc
Confidence            21    1111121 2343 578999999999999999987754

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.47  E-value=7e-14  Score=112.51  Aligned_cols=107  Identities=22%  Similarity=0.148  Sum_probs=79.3

Q ss_pred             CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCcc-C-C
Q 043745           16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLR-A-V   93 (174)
Q Consensus        16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-~-~   93 (174)
                      .....+.||||||+++|...+..++..+|++|+|+|+++.... ...+|+..+....  -.|+++++||+|+.+.. . +
T Consensus       101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~~--~~~iIvviNK~Dl~~~~~~~~  177 (434)
T 1zun_B          101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLLG--IKHIVVAINKMDLNGFDERVF  177 (434)
T ss_dssp             CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHTT--CCEEEEEEECTTTTTSCHHHH
T ss_pred             cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHcC--CCeEEEEEEcCcCCcccHHHH
Confidence            3446789999999999999998999999999999999986422 3344544443331  23699999999997521 1 1


Q ss_pred             --CHHHHHHHHHHhC-----CcEEEEeccCCCCHHHHHH
Q 043745           94 --ATEDAQSYAEREG-----LSFIETSALEAINVEKAFQ  125 (174)
Q Consensus        94 --~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~v~~  125 (174)
                        ..++.++++..++     ++++++||++|.|++++++
T Consensus       178 ~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~  216 (434)
T 1zun_B          178 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE  216 (434)
T ss_dssp             HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred             HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence              2345666777777     6799999999999988544

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.46  E-value=1.4e-14  Score=117.65  Aligned_cols=106  Identities=17%  Similarity=0.188  Sum_probs=65.9

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCCCcc---
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP---TTFENVSRWLKELRDHADSNIV-IMMIGNKTDLKHLR---   91 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~---   91 (174)
                      ..+.||||||+++|...+..++..+|++|+|+|+++.   .+|+....|...+......++| +|+++||+|+....   
T Consensus       121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~  200 (467)
T 1r5b_A          121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE  200 (467)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred             eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence            5789999999999999999999999999999999986   2343222233332221113577 99999999996411   


Q ss_pred             ---CCCHHHHHHHHHHh-C------CcEEEEeccCCCCHHHHH
Q 043745           92 ---AVATEDAQSYAERE-G------LSFIETSALEAINVEKAF  124 (174)
Q Consensus        92 ---~~~~~~~~~~~~~~-~------~~~~~~Sa~~~~~i~~v~  124 (174)
                         ....++...++..+ +      ++++++||++|.|+.+++
T Consensus       201 ~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          201 ERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence               11223466666666 4      569999999999998766

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.44  E-value=9.5e-14  Score=104.25  Aligned_cols=113  Identities=15%  Similarity=0.092  Sum_probs=73.8

Q ss_pred             EEEEEEeCCCchhhhh-----------hhHHhhccCCEEEEEEeCCChhh-HHHHHHHHHHHHhhcCCCCeEEEEEe-CC
Q 043745           19 IKAQIWDTAGQERYRA-----------ITSAYYRGALGALLVYDVTKPTT-FENVSRWLKELRDHADSNIVIMMIGN-KT   85 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~-----------~~~~~~~~~d~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piilv~n-K~   85 (174)
                      ..+.||||||+.++..           ....+++.+|++|+|||+++... ...+..|+..+.... ...|+++++| |+
T Consensus        71 ~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~  149 (260)
T 2xtp_A           71 REIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKE  149 (260)
T ss_dssp             EEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGG
T ss_pred             CEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEccc
Confidence            5689999999876422           23346789999999999986322 222334444332111 1346666666 99


Q ss_pred             CCCCccCCCH-------HHHHHHHHHhCCc---E--EEEeccCCCCHHHHHHHHHHHHHH
Q 043745           86 DLKHLRAVAT-------EDAQSYAEREGLS---F--IETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        86 Dl~~~~~~~~-------~~~~~~~~~~~~~---~--~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      |+.+. .+..       .+++.++...+..   +  +++||+++.|++++|+++.+.+..
T Consensus       150 Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          150 DLNGG-SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             GGTTC-CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCc-cHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence            99743 2222       3345566666543   2  789999999999999999988765

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.43  E-value=3.6e-13  Score=99.91  Aligned_cols=116  Identities=15%  Similarity=0.112  Sum_probs=73.9

Q ss_pred             EECCeEEEEEEEeCCCc-----------hhhhhhhHHhhccCCEEEEEEeCCChhh--HHHHHHHHHHHHhhcCCCCeEE
Q 043745           13 QVEGRTIKAQIWDTAGQ-----------ERYRAITSAYYRGALGALLVYDVTKPTT--FENVSRWLKELRDHADSNIVIM   79 (174)
Q Consensus        13 ~~~~~~~~l~l~D~~G~-----------~~~~~~~~~~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~pii   79 (174)
                      .+++  ..+.||||||.           +.+...+..+++++|++|+|+|+++...  ...+..+...+...  ...|++
T Consensus        74 ~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~i  149 (239)
T 3lxx_A           74 SWKE--TELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMI  149 (239)
T ss_dssp             EETT--EEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEE
T ss_pred             EeCC--ceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEE
Confidence            3444  46799999993           3455566667788999999999876433  22222232222221  136999


Q ss_pred             EEEeCCCCCCccCCC------HHHHHHHHHHhCCcEEEEeccCC-----CCHHHHHHHHHHHHH
Q 043745           80 MIGNKTDLKHLRAVA------TEDAQSYAEREGLSFIETSALEA-----INVEKAFQTILSEIY  132 (174)
Q Consensus        80 lv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~~~~~Sa~~~-----~~i~~v~~~l~~~i~  132 (174)
                      +|+||+|+.+.+.+.      .+.++++++..+..++.+++..+     .++.++|+.+...+.
T Consensus       150 iv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~  213 (239)
T 3lxx_A          150 LIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVR  213 (239)
T ss_dssp             EEEECGGGC------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHH
Confidence            999999986544433      24678888888888887776643     567777776655543

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.42  E-value=2e-13  Score=119.45  Aligned_cols=113  Identities=17%  Similarity=0.107  Sum_probs=82.1

Q ss_pred             EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCCCcc
Q 043745           13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIV-IMMIGNKTDLKHLR   91 (174)
Q Consensus        13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~   91 (174)
                      .++.....+.||||||+++|...+..++..+|++|+|+|+++.... ...+|+..+...   ++| +|+++||+|+.+..
T Consensus       353 ~f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~  428 (1289)
T 3avx_A          353 EYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVDDE  428 (1289)
T ss_dssp             EEECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCCCH
T ss_pred             EEcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeecccccch
Confidence            3444456789999999999999999999999999999999986432 233455554443   577 88999999997522


Q ss_pred             CC---CHHHHHHHHHHhC-----CcEEEEeccCC--------CCHHHHHHHHHH
Q 043745           92 AV---ATEDAQSYAEREG-----LSFIETSALEA--------INVEKAFQTILS  129 (174)
Q Consensus        92 ~~---~~~~~~~~~~~~~-----~~~~~~Sa~~~--------~~i~~v~~~l~~  129 (174)
                      ..   ..+++++++..++     ++++++||++|        .|+.++++.+.+
T Consensus       429 e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~  482 (1289)
T 3avx_A          429 ELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDS  482 (1289)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhh
Confidence            21   2345667777766     58999999999        346666665544

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.41  E-value=3.3e-13  Score=102.12  Aligned_cols=106  Identities=9%  Similarity=-0.023  Sum_probs=74.1

Q ss_pred             CCCchhhhhhhHHhhccCCEEEEEEeCCChhhHH---HHHHHHHHHHhhc-CCCCeEEEEEeC-CCCCCccCCCHHHHHH
Q 043745           26 TAGQERYRAITSAYYRGALGALLVYDVTKPTTFE---NVSRWLKELRDHA-DSNIVIMMIGNK-TDLKHLRAVATEDAQS  100 (174)
Q Consensus        26 ~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~---~~~~~~~~i~~~~-~~~~piilv~nK-~Dl~~~~~~~~~~~~~  100 (174)
                      .+||+.++.+|+.||++.|++|||+|.+|.+.++   ++.+....+.... ..++|++|++|| .|++.  ..+..++.+
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e  271 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH  271 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHH
Confidence            4688999999999999999999999999987544   2222112222211 247999999996 68865  344554433


Q ss_pred             HHH----HhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745          101 YAE----REGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus       101 ~~~----~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      ...    ...+.+..|||.+|+|+.+.++|+.+.+..
T Consensus       272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~  308 (312)
T 3l2o_B          272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES  308 (312)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred             HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence            321    123568899999999999999999987643

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.41  E-value=2.9e-14  Score=112.17  Aligned_cols=118  Identities=15%  Similarity=0.254  Sum_probs=68.6

Q ss_pred             ECCeEEEEEEEeCCCc-------hhhhhhhH-------HhhccCCEE-----------EEEEeCCC-hhhHHHHH-HHHH
Q 043745           14 VEGRTIKAQIWDTAGQ-------ERYRAITS-------AYYRGALGA-----------LLVYDVTK-PTTFENVS-RWLK   66 (174)
Q Consensus        14 ~~~~~~~l~l~D~~G~-------~~~~~~~~-------~~~~~~d~i-----------i~v~d~~~-~~s~~~~~-~~~~   66 (174)
                      .++..+.+.+|||+|+       +.|..++.       .|+..++++           +++|++++ ..++..+. .|+.
T Consensus        90 ~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~  169 (361)
T 2qag_A           90 ERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMK  169 (361)
T ss_dssp             --CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHH
T ss_pred             cCCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHH
Confidence            3555678999999999       67777776       777665543           35555554 44555553 4554


Q ss_pred             HHHhhcCCCCeEEEEEeCCCCCCccCCCH--HHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q 043745           67 ELRDHADSNIVIMMIGNKTDLKHLRAVAT--EDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIIS  136 (174)
Q Consensus        67 ~i~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~  136 (174)
                      .+    ...+|+|+|+||+|+...+++..  +++..++...+++++++||+++.+ ++.|.++.+.+....+
T Consensus       170 ~l----~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip  236 (361)
T 2qag_A          170 AI----HNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIP  236 (361)
T ss_dssp             HT----CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCS
T ss_pred             Hh----ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCC
Confidence            43    24789999999999986554433  466677777789999999999999 8889999888876543

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.40  E-value=2.8e-13  Score=109.66  Aligned_cols=107  Identities=13%  Similarity=0.132  Sum_probs=76.9

Q ss_pred             ECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChh---hHH---HHHHHHHHHHhhcCCCCe-EEEEEeCCC
Q 043745           14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPT---TFE---NVSRWLKELRDHADSNIV-IMMIGNKTD   86 (174)
Q Consensus        14 ~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p-iilv~nK~D   86 (174)
                      ++.....+.||||||+++|...+..++..+|++|+|+|+++..   +|+   ...+++..+...   ++| +|+++||+|
T Consensus        80 ~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~---~v~~iivviNK~D  156 (458)
T 1f60_A           80 FETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMD  156 (458)
T ss_dssp             EECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGG
T ss_pred             EecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc---CCCeEEEEEEccc
Confidence            3444467999999999999999999999999999999998753   221   222333333322   455 999999999


Q ss_pred             CCCc-cC---CCHHHHHHHHHHhC-----CcEEEEeccCCCCHHHH
Q 043745           87 LKHL-RA---VATEDAQSYAEREG-----LSFIETSALEAINVEKA  123 (174)
Q Consensus        87 l~~~-~~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~v  123 (174)
                      +.+. ..   ...++++.++..++     ++++++||++|.|+.++
T Consensus       157 l~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          157 SVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             GGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             cccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            9731 11   12345666666666     58999999999998754

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.39  E-value=4.2e-14  Score=116.13  Aligned_cols=109  Identities=17%  Similarity=0.187  Sum_probs=79.6

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC-CCHHH
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA-VATED   97 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-~~~~~   97 (174)
                      ..+.||||||++.|..++..++..+|++|||||+++....+....| ..+..   .++|+++++||+|+.+... ....+
T Consensus        52 ~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l-~~~~~---~~vPiIVViNKiDl~~~~~~~v~~~  127 (537)
T 3izy_P           52 EKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESI-QHAKD---AHVPIVLAINKCDKAEADPEKVKKE  127 (537)
T ss_dssp             SCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHH-HHHHT---TTCCEEECCBSGGGTTTSCCSSSSH
T ss_pred             CEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHH-HHHHH---cCCcEEEEEecccccccchHHHHHH
Confidence            3689999999999999999999999999999999986555443332 33322   3689999999999975321 11122


Q ss_pred             HHHH---HHHh--CCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           98 AQSY---AERE--GLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        98 ~~~~---~~~~--~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      ...+   +..+  .++++++||++|.|++++|+++...+
T Consensus       128 l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~  166 (537)
T 3izy_P          128 LLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALA  166 (537)
T ss_dssp             HHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred             HHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhh
Confidence            2211   1122  24799999999999999999988765

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.35  E-value=5.2e-12  Score=106.47  Aligned_cols=74  Identities=14%  Similarity=0.046  Sum_probs=57.8

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      ...+....+.++||||+|+++|...+..+++.+|++++|+|+++...... ..|+..+...   ++|+++++||+|+.
T Consensus        66 ~~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~~---~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           66 VAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAERL---GLPRMVVVTKLDKG  139 (665)
T ss_dssp             EEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCEEEEEECGGGC
T ss_pred             ceEEeeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHHc---cCCEEEEecCCchh
Confidence            34444445789999999999999999999999999999999887644333 3444544442   68999999999986

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.35  E-value=7.6e-13  Score=100.26  Aligned_cols=112  Identities=13%  Similarity=0.140  Sum_probs=63.9

Q ss_pred             CCeEEEEEEEeCCCch-------hhhhhh-------HHhhcc-------------CCEEEEEEeCCChhhHHHHHHHHHH
Q 043745           15 EGRTIKAQIWDTAGQE-------RYRAIT-------SAYYRG-------------ALGALLVYDVTKPTTFENVSRWLKE   67 (174)
Q Consensus        15 ~~~~~~l~l~D~~G~~-------~~~~~~-------~~~~~~-------------~d~ii~v~d~~~~~s~~~~~~~~~~   67 (174)
                      ++..+.+.||||||..       .+..+.       ..|+..             +|+++++++.+...-...-..++..
T Consensus        61 ~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~  140 (274)
T 3t5d_A           61 GGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKR  140 (274)
T ss_dssp             --CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHH
T ss_pred             CCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHH
Confidence            4555789999999973       333333       444443             7899999977653211222344555


Q ss_pred             HHhhcCCCCeEEEEEeCCCCCCccCCC--HHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745           68 LRDHADSNIVIMMIGNKTDLKHLRAVA--TEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        68 i~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      +..    .+|+|+|+||+|+....+..  .+.+.+.+...+++++.+||.++.|++++++++.+.
T Consensus       141 l~~----~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~  201 (274)
T 3t5d_A          141 LHE----KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR  201 (274)
T ss_dssp             HTT----TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred             Hhc----cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence            533    68999999999986533221  123445556678999999999999999998887654

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.35  E-value=3.5e-13  Score=112.49  Aligned_cols=106  Identities=15%  Similarity=0.117  Sum_probs=73.5

Q ss_pred             CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChh---hH---HHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPT---TF---ENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      .....+.||||||+++|...+..++..+|++|+|+|+++..   ++   ....+.+..+... + -.|+|+|+||+|+.+
T Consensus       242 ~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l-g-i~~iIVVvNKiDl~~  319 (611)
T 3izq_1          242 THRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-G-IHNLIIAMNKMDNVD  319 (611)
T ss_dssp             CSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT-T-CCEEEEEEECTTTTT
T ss_pred             cCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc-C-CCeEEEEEecccccc
Confidence            34467899999999999999999999999999999998742   11   1111222222222 1 245999999999975


Q ss_pred             ccCCC----HHHHHHHHHHhC-----CcEEEEeccCCCCHHHH
Q 043745           90 LRAVA----TEDAQSYAEREG-----LSFIETSALEAINVEKA  123 (174)
Q Consensus        90 ~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~v  123 (174)
                      .+...    .+++..++..++     ++++++||++|.|+.++
T Consensus       320 ~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          320 WSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             hhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            32211    233444555554     58999999999999876

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.32  E-value=2.1e-13  Score=111.19  Aligned_cols=104  Identities=18%  Similarity=0.236  Sum_probs=75.0

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCcc--CC
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP---TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLR--AV   93 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~--~~   93 (174)
                      ..+.||||||++.|..++...+..+|++|+|||+++.   ++.+.+    ..+..   .++|+++++||+|+.+..  .+
T Consensus        51 ~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l----~~~~~---~~vPiIVviNKiDl~~~~~~~v  123 (501)
T 1zo1_I           51 GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAI----QHAKA---AQVPVVVAVNKIDKPEADPDRV  123 (501)
T ss_dssp             SCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHH----HHHHH---TTCCEEEEEECSSSSTTCCCCT
T ss_pred             EEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHH----HHHHh---cCceEEEEEEeccccccCHHHH
Confidence            4689999999999999999999999999999999883   343322    22222   268999999999996421  11


Q ss_pred             CHH--HHHHHHHHhC--CcEEEEeccCCCCHHHHHHHHHH
Q 043745           94 ATE--DAQSYAEREG--LSFIETSALEAINVEKAFQTILS  129 (174)
Q Consensus        94 ~~~--~~~~~~~~~~--~~~~~~Sa~~~~~i~~v~~~l~~  129 (174)
                      ..+  +...++..++  ++++++||++|.|++++|+++..
T Consensus       124 ~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~  163 (501)
T 1zo1_I          124 KNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL  163 (501)
T ss_dssp             TCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred             HHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence            000  0011122233  68999999999999999998764

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.31  E-value=6.4e-12  Score=100.40  Aligned_cols=113  Identities=17%  Similarity=0.120  Sum_probs=83.3

Q ss_pred             EEEEEEeCCCchh----hhhhhHH---hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCeEEEEEeCCCCCC
Q 043745           19 IKAQIWDTAGQER----YRAITSA---YYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD--SNIVIMMIGNKTDLKH   89 (174)
Q Consensus        19 ~~l~l~D~~G~~~----~~~~~~~---~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~   89 (174)
                      ..+.+||++|...    +..+...   .++.++.+++++|++ ...+..+..|..++..+..  ...|.++++||+|+..
T Consensus       205 ~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~  283 (416)
T 1udx_A          205 ERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE  283 (416)
T ss_dssp             CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred             ceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence            4578999999742    2222222   345799999999998 6677788778777665432  2578999999999976


Q ss_pred             ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      .  ...+++.+.+...+..++.+||++++|++++++++.+.+...
T Consensus       284 ~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~  326 (416)
T 1udx_A          284 E--EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRST  326 (416)
T ss_dssp             H--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             H--HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHhc
Confidence            3  223444555556678999999999999999999999887653

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.29  E-value=2.1e-12  Score=98.55  Aligned_cols=113  Identities=12%  Similarity=0.070  Sum_probs=77.6

Q ss_pred             EEEEEEeCCCch-------------hhhhhhHHhhccCCEEE-EEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 043745           19 IKAQIWDTAGQE-------------RYRAITSAYYRGALGAL-LVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNK   84 (174)
Q Consensus        19 ~~l~l~D~~G~~-------------~~~~~~~~~~~~~d~ii-~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK   84 (174)
                      ..+.||||||..             .+..++..|++.++.++ +|+|+++..+......|+..+..   .+.|+++|+||
T Consensus       125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~---~~~~~i~V~NK  201 (299)
T 2aka_B          125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP---QGQRTIGVITK  201 (299)
T ss_dssp             CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT---TCSSEEEEEEC
T ss_pred             CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCC---CCCeEEEEEEc
Confidence            578999999963             45677888999998777 79999875444443345554432   36899999999


Q ss_pred             CCCCCccCCCHHHHHHHHHH--hC-CcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           85 TDLKHLRAVATEDAQSYAER--EG-LSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        85 ~Dl~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      +|+.+......+..+.....  .+ .+++++||+++.|++++++++.+...-.
T Consensus       202 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~~~  254 (299)
T 2aka_B          202 LDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFF  254 (299)
T ss_dssp             GGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHHHH
T ss_pred             cccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHHHH
Confidence            99976443223222210001  12 3578899999999999999988754433

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.28  E-value=4.6e-11  Score=101.08  Aligned_cols=68  Identities=19%  Similarity=0.276  Sum_probs=57.5

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      .+.++||||||+.+|...+..+++.+|++|+|+|+++..++.....|.. +...   ++|+++++||+|+..
T Consensus        76 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~---~~p~ivviNKiD~~~  143 (691)
T 1dar_A           76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY---KVPRIAFANKMDKTG  143 (691)
T ss_dssp             TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT---TCCEEEEEECTTSTT
T ss_pred             CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc---CCCEEEEEECCCccc
Confidence            4779999999999999999999999999999999999877776666643 3332   689999999999864

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.28  E-value=3e-11  Score=99.37  Aligned_cols=73  Identities=21%  Similarity=0.170  Sum_probs=55.0

Q ss_pred             EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      .++...+.++||||||+.+|...+..++..+|++|+|+|+++..... ...++..+..   .++|+++++||+|+..
T Consensus        76 ~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~~~---~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           76 QFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVTRL---RDTPILTFMNKLDRDI  148 (529)
T ss_dssp             EEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHTT---TTCCEEEEEECTTSCC
T ss_pred             EEEECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHHHH---cCCCEEEEEcCcCCcc
Confidence            33334478999999999999988889999999999999998854322 2233333322   3689999999999864

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.23  E-value=1.3e-10  Score=98.57  Aligned_cols=69  Identities=19%  Similarity=0.235  Sum_probs=55.7

Q ss_pred             eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      ..+.++||||||+.+|...+..+++.+|++|+|+|+++.........| ..+..   .++|+++++||+|+..
T Consensus        80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           80 EPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK---YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             CceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH---cCCCEEEEEeCCCccc
Confidence            348899999999999999999999999999999999987655544444 33322   3689999999999854

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.21  E-value=6.4e-11  Score=93.35  Aligned_cols=96  Identities=19%  Similarity=0.286  Sum_probs=74.6

Q ss_pred             CchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHH----HH
Q 043745           28 GQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSY----AE  103 (174)
Q Consensus        28 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~  103 (174)
                      ..++|.+++..+++.++++++|+|+++.+     ..|...+.+... +.|+++|+||+||.+. ....++..++    +.
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAK  127 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHH
Confidence            56889999999999999999999999853     456666665544 7899999999999753 3334444443    56


Q ss_pred             HhCC---cEEEEeccCCCCHHHHHHHHHHH
Q 043745          104 REGL---SFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus       104 ~~~~---~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      ..|+   +++.+||+++.|++++++.+.+.
T Consensus       128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~  157 (368)
T 3h2y_A          128 QLGLKPEDVFLISAAKGQGIAELADAIEYY  157 (368)
T ss_dssp             HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence            6777   79999999999999999988653

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.19  E-value=7.7e-12  Score=98.24  Aligned_cols=107  Identities=14%  Similarity=0.114  Sum_probs=78.3

Q ss_pred             EEEEEEeCCCchhh-------------hhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 043745           19 IKAQIWDTAGQERY-------------RAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKT   85 (174)
Q Consensus        19 ~~l~l~D~~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~   85 (174)
                      ..+.||||||..++             ..+...|+.++|++|+++|..+.+...  ..|+..+......+.|+++|+||+
T Consensus       136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK~  213 (360)
T 3t34_A          136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTKI  213 (360)
T ss_dssp             CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEECG
T ss_pred             CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeCC
Confidence            35899999998776             667888999999999999876543322  334444444444568999999999


Q ss_pred             CCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043745           86 DLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI  127 (174)
Q Consensus        86 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l  127 (174)
                      |+.+......+..+.+...+++.|+.+++.++.++++.+..+
T Consensus       214 Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~  255 (360)
T 3t34_A          214 DLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMI  255 (360)
T ss_dssp             GGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred             ccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHH
Confidence            997655555555555555667889999999988887665543

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.16  E-value=5.9e-10  Score=94.40  Aligned_cols=68  Identities=19%  Similarity=0.200  Sum_probs=56.8

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      ...++||||||+.+|...+..+++.+|++|+|+|+++..+......|. .+...   ++|+++++||+|+..
T Consensus        74 ~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~~---~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           74 GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATTY---GVPRIVFVNKMDKLG  141 (693)
T ss_dssp             TEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHHT---TCCEEEEEECTTSTT
T ss_pred             CeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHHc---CCCEEEEEECCCccc
Confidence            367899999999999999999999999999999999877776665553 34332   689999999999864

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.16  E-value=9.5e-11  Score=99.24  Aligned_cols=111  Identities=14%  Similarity=0.214  Sum_probs=79.5

Q ss_pred             EEEEEeCCCchhh---hhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHH
Q 043745           20 KAQIWDTAGQERY---RAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATE   96 (174)
Q Consensus        20 ~l~l~D~~G~~~~---~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~   96 (174)
                      .+.||||||....   ...+..+++.+|++|||+|+++..+......|...+..   .+.|+++|+||+|+.....++.+
T Consensus       175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~---~~~~iiiVlNK~Dl~~~~~~~~e  251 (695)
T 2j69_A          175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG---RGLTVFFLVNAWDQVRESLIDPD  251 (695)
T ss_dssp             TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT---SCCCEEEEEECGGGGGGGCSSTT
T ss_pred             CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh---hCCCEEEEEECcccccccccChh
Confidence            4899999997763   45667888999999999999988777776666544432   25789999999999654322111


Q ss_pred             ----------HHHH-----HHHHh--------CCcEEEEecc--------------CCCCHHHHHHHHHHHHHH
Q 043745           97 ----------DAQS-----YAERE--------GLSFIETSAL--------------EAINVEKAFQTILSEIYR  133 (174)
Q Consensus        97 ----------~~~~-----~~~~~--------~~~~~~~Sa~--------------~~~~i~~v~~~l~~~i~~  133 (174)
                                ....     +....        ..+++++||+              ++.|+++++..+.+.+..
T Consensus       252 e~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          252 DVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence                      1111     11111        1369999999              999999999999887654

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.15  E-value=2e-12  Score=107.62  Aligned_cols=103  Identities=22%  Similarity=0.194  Sum_probs=58.9

Q ss_pred             CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChh---hH---HHHHHHHHHHHhhcCCCCe-EEEEEeCCCCC
Q 043745           16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPT---TF---ENVSRWLKELRDHADSNIV-IMMIGNKTDLK   88 (174)
Q Consensus        16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~   88 (174)
                      .....+.||||||+++|...+..++..+|++|||+|+++..   .+   ......+..+...   ++| +|+|+||+|+.
T Consensus       252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~  328 (592)
T 3mca_A          252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLM  328 (592)
T ss_dssp             -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGG
T ss_pred             eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEeccccc
Confidence            33467899999999999988888899999999999998632   11   1111222222222   455 99999999996


Q ss_pred             Ccc-CC---CHHHHHHHH-HHhCC-----cEEEEeccCCCCHH
Q 043745           89 HLR-AV---ATEDAQSYA-EREGL-----SFIETSALEAINVE  121 (174)
Q Consensus        89 ~~~-~~---~~~~~~~~~-~~~~~-----~~~~~Sa~~~~~i~  121 (174)
                      +.. ..   ...++..+. ..+++     +++++||++|.|+.
T Consensus       329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            521 11   123334444 44454     69999999999998

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.15  E-value=1.8e-10  Score=83.18  Aligned_cols=107  Identities=17%  Similarity=0.214  Sum_probs=73.7

Q ss_pred             EEEEEeCCCch----------hhhhhhHHhh---ccCCEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCeEEEEEeC
Q 043745           20 KAQIWDTAGQE----------RYRAITSAYY---RGALGALLVYDVTKPTTFE--NVSRWLKELRDHADSNIVIMMIGNK   84 (174)
Q Consensus        20 ~l~l~D~~G~~----------~~~~~~~~~~---~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK   84 (174)
                      .+.+|||+|..          .+......++   ..++++++++|+++..++.  .+..|+.   .   .++|+++++||
T Consensus        73 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~---~---~~~~~~~v~nK  146 (210)
T 1pui_A           73 GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV---D---SNIAVLVLLTK  146 (210)
T ss_dssp             TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---H---TTCCEEEEEEC
T ss_pred             CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH---H---cCCCeEEEEec
Confidence            36899999974          2344444555   4789999999998865543  2333432   1   26899999999


Q ss_pred             CCCCCcc--CCCHHHHHHHHHHhC--CcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           85 TDLKHLR--AVATEDAQSYAEREG--LSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        85 ~Dl~~~~--~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      +|+....  +...+.+..++...+  +.++++||+++.|++++++.+.+.+.
T Consensus       147 ~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~  198 (210)
T 1pui_A          147 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS  198 (210)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred             ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence            9986532  112344555555554  46889999999999999998877653

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.09  E-value=2.4e-10  Score=90.05  Aligned_cols=97  Identities=20%  Similarity=0.233  Sum_probs=72.6

Q ss_pred             CCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHH----H
Q 043745           27 AGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSY----A  102 (174)
Q Consensus        27 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~  102 (174)
                      ..+++|.+++..++++++++++|+|+++.++     .|...+..... +.|+++|+||+||.+. ....+...++    +
T Consensus        56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~  128 (369)
T 3ec1_A           56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPR-SVKYPKLLRWMRRMA  128 (369)
T ss_dssp             ---CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCT-TCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCC-ccCHHHHHHHHHHHH
Confidence            3588999999999999999999999999763     34444444443 6899999999999753 2333444433    5


Q ss_pred             HHhCC---cEEEEeccCCCCHHHHHHHHHHH
Q 043745          103 EREGL---SFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus       103 ~~~~~---~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      ...|+   .++.+||+++.|++++++.+.+.
T Consensus       129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~  159 (369)
T 3ec1_A          129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRY  159 (369)
T ss_dssp             HTTTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             HHcCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence            56676   68999999999999999988654

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.08  E-value=8.3e-10  Score=91.15  Aligned_cols=75  Identities=21%  Similarity=0.167  Sum_probs=58.5

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      .+.+..+...++|+||||+.+|.......++-+|++|+|+|+...-.-+...-| .....+   ++|+++++||+|...
T Consensus        92 ~~~~~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~---~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A           92 VMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMR---ATPVMTFVNKMDREA  166 (548)
T ss_dssp             EEEEEETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHT---TCCEEEEEECTTSCC
T ss_pred             eEEEEECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHHh---CCceEEEEecccchh
Confidence            344444557899999999999999999999999999999999986544444445 333333   789999999999854

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.08  E-value=2.8e-10  Score=85.51  Aligned_cols=80  Identities=9%  Similarity=0.073  Sum_probs=55.8

Q ss_pred             EEECCeEEEEEEEeCCCchhhhhhhHHhhc---------cCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCC--CeEE
Q 043745           12 FQVEGRTIKAQIWDTAGQERYRAITSAYYR---------GALGALLVYDVTKPTTFENV-SRWLKELRDHADSN--IVIM   79 (174)
Q Consensus        12 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~---------~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~--~pii   79 (174)
                      +.+++  ..+.||||||++++......+++         ++|+++||++++... +... ..|+..+......+  .|++
T Consensus        79 ~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i  155 (262)
T 3def_A           79 RTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTL  155 (262)
T ss_dssp             EEETT--EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEE
T ss_pred             EEECC--eeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEE
Confidence            34444  57899999999887665554443         789999999998754 3333 46777776654422  4999


Q ss_pred             EEEeCCCCCCccCCC
Q 043745           80 MIGNKTDLKHLRAVA   94 (174)
Q Consensus        80 lv~nK~Dl~~~~~~~   94 (174)
                      +|+||+|+...+...
T Consensus       156 vv~nK~Dl~~~~~~~  170 (262)
T 3def_A          156 LVLTHAQFSPPDELS  170 (262)
T ss_dssp             EEEECTTCCCSTTCC
T ss_pred             EEEeCcccCCCCCcc
Confidence            999999996443333

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.06  E-value=4.7e-10  Score=86.15  Aligned_cols=111  Identities=14%  Similarity=0.123  Sum_probs=69.0

Q ss_pred             EEEEEEeCCCchh-------------hhhhhHHhhccCCEEEEEEeCCChhhH-HHHHHHHHHHHhhcCCCCeEEEEEeC
Q 043745           19 IKAQIWDTAGQER-------------YRAITSAYYRGALGALLVYDVTKPTTF-ENVSRWLKELRDHADSNIVIMMIGNK   84 (174)
Q Consensus        19 ~~l~l~D~~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~piilv~nK   84 (174)
                      ..+.||||||...             +......+++.+|++++|+|.++.... .....++..+.   ..+.|+++|+||
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~---~~~~~~i~v~NK  207 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD---PEGKRTIGVITK  207 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC---SSCSSEEEEEEC
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhC---CCCCcEEEEEcC
Confidence            4689999999753             566778889999999999997543211 11112333332   236899999999


Q ss_pred             CCCCCccCCCHHHHHHHHHHhCCcEEEEecc---C---CCCHHHHHHHHHHHHH
Q 043745           85 TDLKHLRAVATEDAQSYAEREGLSFIETSAL---E---AINVEKAFQTILSEIY  132 (174)
Q Consensus        85 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~---~---~~~i~~v~~~l~~~i~  132 (174)
                      +|+........+..+.....++..++++++.   +   +.|+.++++.+.+.+.
T Consensus       208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~  261 (315)
T 1jwy_B          208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK  261 (315)
T ss_dssp             TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence            9997544322222221111222556666654   4   6788888887766653

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.05  E-value=8e-10  Score=82.57  Aligned_cols=109  Identities=12%  Similarity=-0.060  Sum_probs=69.4

Q ss_pred             EEEEEEeCCCchhhhhhhH------HhhccCCEEEEEEeCCChhhHHHH---HHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           19 IKAQIWDTAGQERYRAITS------AYYRGALGALLVYDVTKPTTFENV---SRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~---~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      +.+.||||+|+..+.....      ..+.. +++++++|.....+....   ..+.......  .+.|+++|+||+|+..
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~iv~NK~D~~~  185 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLS  185 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCC
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc--cCCCeEEEEecccccc
Confidence            4689999999987644322      24556 899999987643332222   1111111111  2589999999999875


Q ss_pred             ccCCCHHHHHH----------------------------HHHHhC--CcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           90 LRAVATEDAQS----------------------------YAEREG--LSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        90 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      ..++  ++..+                            ++..++  .+++++||+++.|++++++++.+.+.
T Consensus       186 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          186 EEEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             HHHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence            3321  11111                            123443  47999999999999999999987764

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.02  E-value=3.2e-10  Score=82.61  Aligned_cols=106  Identities=12%  Similarity=0.073  Sum_probs=70.4

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHH
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDA   98 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~   98 (174)
                      ..+.+|||+|+-....   .+....+.+++|+|+++....  ...+..   ..   +.|+++|+||+|+.+......++.
T Consensus       109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~~~---~~---~~~~iiv~NK~Dl~~~~~~~~~~~  177 (221)
T 2wsm_A          109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKHPE---IF---RVADLIVINKVALAEAVGADVEKM  177 (221)
T ss_dssp             CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHCHH---HH---HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred             CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhhhh---hh---hcCCEEEEecccCCcchhhHHHHH
Confidence            4567888888511111   111257889999998765321  111211   11   468899999999965433456677


Q ss_pred             HHHHHHhC--CcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745           99 QSYAEREG--LSFIETSALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus        99 ~~~~~~~~--~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                      ..++..++  .+++++||+++.|++++|+++.+.+....
T Consensus       178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~  216 (221)
T 2wsm_A          178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS  216 (221)
T ss_dssp             HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred             HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence            77776654  68999999999999999999988775543

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.00  E-value=3.1e-10  Score=88.95  Aligned_cols=103  Identities=13%  Similarity=0.108  Sum_probs=70.7

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHH
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDA   98 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~   98 (174)
                      +.+.||||+|...   .....+..+|++++|+|....+.+..+..+   +     .+.|+++|+||+|+...... ....
T Consensus       172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~---~-----~~~p~ivVlNK~Dl~~~~~~-~~~~  239 (355)
T 3p32_A          172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG---V-----LELADIVVVNKADGEHHKEA-RLAA  239 (355)
T ss_dssp             CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT---S-----GGGCSEEEEECCCGGGHHHH-HHHH
T ss_pred             CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh---H-----hhcCCEEEEECCCCcChhHH-HHHH
Confidence            5689999999543   233345889999999998766544332211   1     24689999999999653221 1112


Q ss_pred             HHHHHH---h-------CCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           99 QSYAER---E-------GLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        99 ~~~~~~---~-------~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      .++...   .       +.+++++||+++.|++++++++.+.+..
T Consensus       240 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          240 RELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            222222   2       4689999999999999999999888765

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.98  E-value=9.7e-11  Score=89.93  Aligned_cols=114  Identities=13%  Similarity=0.222  Sum_probs=65.5

Q ss_pred             CCeEEEEEEEeCCCc-------hhhhhhhH-------HhhccC-------------CEEEEEEeCCChhhHHHHH-HHHH
Q 043745           15 EGRTIKAQIWDTAGQ-------ERYRAITS-------AYYRGA-------------LGALLVYDVTKPTTFENVS-RWLK   66 (174)
Q Consensus        15 ~~~~~~l~l~D~~G~-------~~~~~~~~-------~~~~~~-------------d~ii~v~d~~~~~s~~~~~-~~~~   66 (174)
                      ++....+.+||++|.       +.+..+..       .++...             ++++|+.+.+. .+++.+. .++.
T Consensus        72 ~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~  150 (301)
T 2qnr_A           72 RGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMK  150 (301)
T ss_dssp             --CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHH
T ss_pred             CCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHH
Confidence            344567899999998       55665554       555443             33555555332 1233332 2333


Q ss_pred             HHHhhcCCCCeEEEEEeCCCCCCccCC--CHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           67 ELRDHADSNIVIMMIGNKTDLKHLRAV--ATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        67 ~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      .+   . ...++++|+||.|+...+++  ..+++.+++..++++++++||+++ |++++|.++.+.+...
T Consensus       151 ~l---~-~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~  215 (301)
T 2qnr_A          151 AI---H-NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS  215 (301)
T ss_dssp             HH---T-TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred             HH---H-hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence            32   2 35799999999999764332  345778888999999999999999 9999999999887643

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=98.96  E-value=1.9e-09  Score=81.32  Aligned_cols=82  Identities=12%  Similarity=0.047  Sum_probs=54.4

Q ss_pred             EECCeEEEEEEEeCCCchhhhhhhH-------Hh--hccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCC--CeEEE
Q 043745           13 QVEGRTIKAQIWDTAGQERYRAITS-------AY--YRGALGALLVYDVTKPTTFENV-SRWLKELRDHADSN--IVIMM   80 (174)
Q Consensus        13 ~~~~~~~~l~l~D~~G~~~~~~~~~-------~~--~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~--~piil   80 (174)
                      .++.....+.||||||+.++.....       .+  ...+|+++||+|++.. ++... ..|+..+....+.+  .|+++
T Consensus        81 ~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iiv  159 (270)
T 1h65_A           81 SRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIV  159 (270)
T ss_dssp             EEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEE
T ss_pred             EEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEE
Confidence            3433446799999999976643222       22  2479999999998753 34333 46777776554322  69999


Q ss_pred             EEeCCCCCCccCCCH
Q 043745           81 IGNKTDLKHLRAVAT   95 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~   95 (174)
                      |+||+|+.+.+....
T Consensus       160 V~nK~Dl~~~~~~~~  174 (270)
T 1h65_A          160 ALTHAQFSPPDGLPY  174 (270)
T ss_dssp             EEECCSCCCGGGCCH
T ss_pred             EEECcccCCcCCCCH
Confidence            999999975443333

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.90  E-value=4.9e-09  Score=79.70  Aligned_cols=100  Identities=13%  Similarity=0.081  Sum_probs=71.6

Q ss_pred             eCCCch-hhhhhhHHhhccCCEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHH
Q 043745           25 DTAGQE-RYRAITSAYYRGALGALLVYDVTKPTTFE--NVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSY  101 (174)
Q Consensus        25 D~~G~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  101 (174)
                      ..|||. .........++.+|++++|+|+.++.+..  .+..|+        .++|.++|+||+||.+...  .+...++
T Consensus         5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~~~   74 (282)
T 1puj_A            5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWKEH   74 (282)
T ss_dssp             ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHHHH
Confidence            468876 45566677789999999999999987664  344442        2689999999999975211  2233444


Q ss_pred             HHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745          102 AEREGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus       102 ~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      .+..+++++.+||+++.|++++++.+.+.+...
T Consensus        75 ~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~  107 (282)
T 1puj_A           75 FENQGIRSLSINSVNGQGLNQIVPASKEILQEK  107 (282)
T ss_dssp             HHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             HHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            455678999999999999999999887776544

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=98.90  E-value=2.1e-09  Score=92.82  Aligned_cols=70  Identities=21%  Similarity=0.287  Sum_probs=59.6

Q ss_pred             CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745           15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus        15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      ++..+.++||||||+.+|...+..+++.+|++|+|||+++..+++....|.... .   .++|+++++||+|+.
T Consensus        94 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~---~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           94 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G---ERIKPVVVINKVDRA  163 (842)
T ss_dssp             CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCEEEEEEECHHHH
T ss_pred             cCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H---cCCCeEEEEECCCcc
Confidence            445789999999999999999999999999999999999988887766664432 2   268999999999986

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=98.88  E-value=2.8e-08  Score=77.91  Aligned_cols=42  Identities=17%  Similarity=0.090  Sum_probs=32.0

Q ss_pred             CCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccC
Q 043745           75 NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALE  116 (174)
Q Consensus        75 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  116 (174)
                      .+|+++++|+.|..-......+.+++++...+.+++++||+.
T Consensus       199 ~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~  240 (363)
T 1jal_A          199 LKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI  240 (363)
T ss_dssp             TSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred             CCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence            489999999998642122345677888888899999999763

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=98.87  E-value=8.6e-10  Score=87.71  Aligned_cols=48  Identities=25%  Similarity=0.271  Sum_probs=32.4

Q ss_pred             CCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHH
Q 043745           75 NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF  124 (174)
Q Consensus        75 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~  124 (174)
                      .+|+++++||.|+.. . ...+...+.....+.+++.+||+.+.++.+++
T Consensus       214 ~kP~i~v~NK~D~~~-~-~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~  261 (397)
T 1wxq_A          214 NKPMVIAANKADAAS-D-EQIKRLVREEEKRGYIVIPTSAAAELTLRKAA  261 (397)
T ss_dssp             HSCEEEEEECGGGSC-H-HHHHHHHHHHHHTTCEEEEECHHHHHHHHSCS
T ss_pred             CCCEEEEEeCccccc-h-HHHHHHHHHHhhcCCcEEEEeccchhhHHHHH
Confidence            489999999999862 1 11122333333336789999999888887653

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.81  E-value=1.7e-09  Score=86.41  Aligned_cols=109  Identities=12%  Similarity=0.125  Sum_probs=56.2

Q ss_pred             EEEEEEEeCCCchhhh-------hh------------------hHHhhccCCEEEEEEeCCCh-hhHHHHH-HHHHHHHh
Q 043745           18 TIKAQIWDTAGQERYR-------AI------------------TSAYYRGALGALLVYDVTKP-TTFENVS-RWLKELRD   70 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~-------~~------------------~~~~~~~~d~ii~v~d~~~~-~s~~~~~-~~~~~i~~   70 (174)
                      ...+.+||++|...+.       .+                  .+.++.++++.+++|..+.. .++..+. .|+..+. 
T Consensus        87 ~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-  165 (418)
T 2qag_C           87 QLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-  165 (418)
T ss_dssp             CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-
T ss_pred             ccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-
Confidence            3478999999986541       11                  12234455554455544432 3444443 5776664 


Q ss_pred             hcCCCCeEEEEEeCCCCCCccCCCH--HHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745           71 HADSNIVIMMIGNKTDLKHLRAVAT--EDAQSYAEREGLSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        71 ~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                         ..+|+|+|+||+|+...+++..  .++..++...+++++++||+++.+++++|..+...
T Consensus       166 ---~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~  224 (418)
T 2qag_C          166 ---EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR  224 (418)
T ss_dssp             ---TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred             ---ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence               2689999999999976555444  56777888889999999999999999877766543

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.80  E-value=2.9e-09  Score=89.45  Aligned_cols=75  Identities=20%  Similarity=0.158  Sum_probs=57.1

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      .+.+..+...++|+|||||.+|.......++-+|++|+|+|+...-.-+...-| .....+   ++|.++++||+|...
T Consensus        59 ~~~~~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~~---~lp~i~~INKmDr~~  133 (638)
T 3j25_A           59 ITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRKM---GIPTIFFINKIDQNG  133 (638)
T ss_dssp             CCCCBCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHHH---TCSCEECCEECCSSS
T ss_pred             eEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHHc---CCCeEEEEecccccc
Confidence            344555567899999999999999999999999999999999875333332334 333343   688999999999753

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.77  E-value=8.8e-09  Score=80.30  Aligned_cols=104  Identities=15%  Similarity=0.101  Sum_probs=66.0

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCH--H
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVAT--E   96 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~--~   96 (174)
                      +.+.||||+|......   .....+|++++|+|.+..+.+..+..   ..     .+.|.++|+||+|+........  +
T Consensus       149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~  217 (341)
T 2p67_A          149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIARH  217 (341)
T ss_dssp             CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred             CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHHH
Confidence            5689999999765433   24689999999999976543221111   11     1357899999999975322111  1


Q ss_pred             HHHHHHHHh-------CCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           97 DAQSYAERE-------GLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        97 ~~~~~~~~~-------~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      +.+.....+       ..+++++||+++.|++++++++.+.+..
T Consensus       218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~  261 (341)
T 2p67_A          218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTA  261 (341)
T ss_dssp             HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            222222222       3468999999999999999999987653

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=98.76  E-value=5.6e-10  Score=87.41  Aligned_cols=109  Identities=14%  Similarity=0.135  Sum_probs=67.3

Q ss_pred             EEEEEEeCCCch-------------hhhhhhHHhhccCCEEEE-EEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 043745           19 IKAQIWDTAGQE-------------RYRAITSAYYRGALGALL-VYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNK   84 (174)
Q Consensus        19 ~~l~l~D~~G~~-------------~~~~~~~~~~~~~d~ii~-v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK   84 (174)
                      ..+.||||||..             .+..+...|+..++.+|+ |.|++....-.....++..+   ...+.|+++|+||
T Consensus       130 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~---~~~~~~~i~V~NK  206 (353)
T 2x2e_A          130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEV---DPQGQRTIGVITK  206 (353)
T ss_dssp             CSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHH---CTTCTTEEEEEEC
T ss_pred             CCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHh---CcCCCceEEEecc
Confidence            568999999952             456677888877765555 55554322111222233333   3346899999999


Q ss_pred             CCCCCccCCCHHHHHH--HHHHhC-CcEEEEeccCCCCHHHHHHHHHHH
Q 043745           85 TDLKHLRAVATEDAQS--YAEREG-LSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        85 ~Dl~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      +|+.+.........+.  +...++ .+++.+||+++.|++++++++.+.
T Consensus       207 ~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e  255 (353)
T 2x2e_A          207 LDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  255 (353)
T ss_dssp             GGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred             ccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHH
Confidence            9997543311221110  001123 256789999999999999988763

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.74  E-value=1.1e-07  Score=80.67  Aligned_cols=68  Identities=18%  Similarity=0.224  Sum_probs=54.4

Q ss_pred             eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745           17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus        17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      +.+.++|+|||||.+|.......++-+|++|+|+|+...-..+...-|.. ....   ++|+++++||+|..
T Consensus        83 ~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~-a~~~---~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           83 DNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQ-ANKY---GVPRIVYVNKMDRQ  150 (709)
T ss_dssp             CCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHH---TCCEEEEEECSSST
T ss_pred             CCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHH-HHHc---CCCeEEEEcccccc
Confidence            46889999999999999999999999999999999987644443333433 3333   68999999999974

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.67  E-value=1.4e-07  Score=73.70  Aligned_cols=103  Identities=11%  Similarity=0.034  Sum_probs=62.8

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHH
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDA   98 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~   98 (174)
                      +.+.|+||+|....   .......+|.+++|+|+++.+....+..   .+     .+.|.++|+||+|+.+.... ....
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~~  234 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRIQ  234 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHHH
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHHH
Confidence            45789999995321   2344678999999999987543322211   11     14578899999999642111 1112


Q ss_pred             HHHHHH----------hCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           99 QSYAER----------EGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        99 ~~~~~~----------~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      ..+...          ...+++.+||+++.|++++++++.+.+..
T Consensus       235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            222221          13568999999999999999999887643

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=98.59  E-value=7.4e-08  Score=79.57  Aligned_cols=68  Identities=24%  Similarity=0.266  Sum_probs=54.0

Q ss_pred             EEEEEeCCCchh-----------hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745           20 KAQIWDTAGQER-----------YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus        20 ~l~l~D~~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      .+.||||||...           |...+..++..+|++|+|+|+++.........|+..+...   ..|+++|+||+|+.
T Consensus       155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~---~~pvilVlNK~Dl~  231 (550)
T 2qpt_A          155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH---EDKIRVVLNKADMV  231 (550)
T ss_dssp             HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC---GGGEEEEEECGGGS
T ss_pred             CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc---CCCEEEEEECCCcc
Confidence            589999999875           5677788899999999999998755555556676665432   57999999999997


Q ss_pred             Cc
Q 043745           89 HL   90 (174)
Q Consensus        89 ~~   90 (174)
                      ..
T Consensus       232 ~~  233 (550)
T 2qpt_A          232 ET  233 (550)
T ss_dssp             CH
T ss_pred             CH
Confidence            53

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.43  E-value=7.2e-08  Score=82.04  Aligned_cols=108  Identities=14%  Similarity=0.128  Sum_probs=68.9

Q ss_pred             EEEEEeCCCchh-------------hhhhhHHhh-ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 043745           20 KAQIWDTAGQER-------------YRAITSAYY-RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKT   85 (174)
Q Consensus        20 ~l~l~D~~G~~~-------------~~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~   85 (174)
                      .+.|+||||...             +..+...|+ ..+|++++|+|+++.....+...++..+.   ..+.|+|+|+||+
T Consensus       151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~---~~g~pvIlVlNKi  227 (772)
T 3zvr_A          151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD---PQGQRTIGVITKL  227 (772)
T ss_dssp             SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHC---TTCSSEEEEEECT
T ss_pred             ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHH---hcCCCEEEEEeCc
Confidence            478999999533             334555555 47899999999987433222223333333   2368999999999


Q ss_pred             CCCCccCCCHHHHHH-H-HHHhC-CcEEEEeccCCCCHHHHHHHHHHH
Q 043745           86 DLKHLRAVATEDAQS-Y-AEREG-LSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        86 Dl~~~~~~~~~~~~~-~-~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      |+.+........... + ...++ .+++.+||+++.|++++++.+.+.
T Consensus       228 Dlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          228 DLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             TSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             ccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            997644332221110 0 00113 357789999999999999887763

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.41  E-value=2.3e-07  Score=71.28  Aligned_cols=90  Identities=14%  Similarity=0.148  Sum_probs=61.7

Q ss_pred             hhhhHHhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC--CHHHHHHHHHHhCCcE
Q 043745           33 RAITSAYYRGALGALLVYDVTKPT-TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV--ATEDAQSYAEREGLSF  109 (174)
Q Consensus        33 ~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~  109 (174)
                      ..+.+..+.++|.+++|+|+.+++ +...+.+++.....   .++|++||.||+||.+....  ..+...++....|+++
T Consensus        77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v  153 (307)
T 1t9h_A           77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV  153 (307)
T ss_dssp             CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred             hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence            344556789999999999998764 44455565544332   36899999999999763210  1233444555678999


Q ss_pred             EEEeccCCCCHHHHHH
Q 043745          110 IETSALEAINVEKAFQ  125 (174)
Q Consensus       110 ~~~Sa~~~~~i~~v~~  125 (174)
                      +.+||.++.|+++++.
T Consensus       154 ~~~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          154 YLTSSKDQDSLADIIP  169 (307)
T ss_dssp             EECCHHHHTTCTTTGG
T ss_pred             EEEecCCCCCHHHHHh
Confidence            9999998887665544

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.41  E-value=1.9e-07  Score=70.20  Aligned_cols=91  Identities=13%  Similarity=0.089  Sum_probs=62.3

Q ss_pred             CCCchhh-hhhhHHhhccCCEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHH
Q 043745           26 TAGQERY-RAITSAYYRGALGALLVYDVTKPTTFEN--VSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYA  102 (174)
Q Consensus        26 ~~G~~~~-~~~~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~  102 (174)
                      .|||... .......++++|++++|+|+.++.+...  +. |+         ++|.++|+||+||.+...  .+...++.
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---------~k~~iivlNK~DL~~~~~--~~~~~~~~   71 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---------RKETIILLNKVDIADEKT--TKKWVEFF   71 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---------TSEEEEEEECGGGSCHHH--HHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---------CCCcEEEEECccCCCHHH--HHHHHHHH
Confidence            4676532 3456667899999999999998766542  12 21         589999999999975311  22334445


Q ss_pred             HHhCCcEEEEeccCCCCHHHHHHHHHH
Q 043745          103 EREGLSFIETSALEAINVEKAFQTILS  129 (174)
Q Consensus       103 ~~~~~~~~~~Sa~~~~~i~~v~~~l~~  129 (174)
                      +..|+++ .+||+++.|++++++.+..
T Consensus        72 ~~~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           72 KKQGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             HHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             HHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence            5668888 9999999999999887654

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=98.38  E-value=1.4e-06  Score=68.58  Aligned_cols=50  Identities=14%  Similarity=0.085  Sum_probs=36.7

Q ss_pred             CCeEEEEEeCCCCC--Cc-cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHH
Q 043745           75 NIVIMMIGNKTDLK--HL-RAVATEDAQSYAEREGLSFIETSALEAINVEKAF  124 (174)
Q Consensus        75 ~~piilv~nK~Dl~--~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~  124 (174)
                      .+|+++++||.|..  +. +....+.+++++...+.+++++||+...++.++.
T Consensus       201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~  253 (368)
T 2dby_A          201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELS  253 (368)
T ss_dssp             GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSC
T ss_pred             cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhc
Confidence            37999999999742  21 1234577888888889999999998765555443

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.37  E-value=1e-06  Score=68.46  Aligned_cols=104  Identities=13%  Similarity=0.071  Sum_probs=63.9

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHH
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATED   97 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~   97 (174)
                      .+.+.|+||+|...-.   ......+|.+++++|....+..+.+..++   .     +.+.++++||+|+..........
T Consensus       147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~-----~~~~ivvlNK~Dl~~~~~~s~~~  215 (337)
T 2qm8_A          147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---F-----ELADMIAVNKADDGDGERRASAA  215 (337)
T ss_dssp             TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---H-----HHCSEEEEECCSTTCCHHHHHHH
T ss_pred             CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---h-----ccccEEEEEchhccCchhHHHHH
Confidence            3568999999975322   22357899999999986543222221111   1     23556777999975322222222


Q ss_pred             HHHHHHHh----------CCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           98 AQSYAERE----------GLSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        98 ~~~~~~~~----------~~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      .+.+...+          ..+++.+||+++.|++++++.+.+...
T Consensus       216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            33333321          346899999999999999999888654

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.32  E-value=6.4e-07  Score=65.13  Aligned_cols=58  Identities=16%  Similarity=0.129  Sum_probs=47.5

Q ss_pred             CeEEEEEeCCCCCCccCCCHHHHHHHHHHh--CCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           76 IVIMMIGNKTDLKHLRAVATEDAQSYAERE--GLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        76 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      .|.++|+||+|+.+.+....++...++..+  +.+++++||+++.|++++|+++.+.+..
T Consensus       165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            567999999999764445677777777765  5789999999999999999999887643

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=98.27  E-value=9.2e-06  Score=63.99  Aligned_cols=91  Identities=19%  Similarity=0.161  Sum_probs=54.8

Q ss_pred             EECCeEEEEEEEeCCCchhh----hhh---hHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCeEEEEEe
Q 043745           13 QVEGRTIKAQIWDTAGQERY----RAI---TSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD--SNIVIMMIGN   83 (174)
Q Consensus        13 ~~~~~~~~l~l~D~~G~~~~----~~~---~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~n   83 (174)
                      .+++  .+++|+||||...-    ...   .-..++.+|++++|+|+.++..  ....+..++.....  ...|.+++.|
T Consensus       115 ~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~n  190 (376)
T 4a9a_A          115 RYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIK  190 (376)
T ss_dssp             EETT--EEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEE
T ss_pred             EeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhh
Confidence            4455  56899999996421    111   2234578999999999998632  22222223322211  3567888999


Q ss_pred             CCCCCC--------ccCCCHHHHHHHHHHhCC
Q 043745           84 KTDLKH--------LRAVATEDAQSYAEREGL  107 (174)
Q Consensus        84 K~Dl~~--------~~~~~~~~~~~~~~~~~~  107 (174)
                      |.|...        ....+.++.+.+...+.+
T Consensus       191 K~d~~gi~i~~~~~~~~l~~eeik~il~~~~l  222 (376)
T 4a9a_A          191 KKEKGGISITNTVPLTHLGNDEIRAVMSEYRI  222 (376)
T ss_dssp             ECSSSCEEEEESSCCSSCCHHHHHHHHHHTTC
T ss_pred             HhhhhhhhhhcchhhhhccHHHHHHHHHHhcc
Confidence            999632        123556677766666554

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.19  E-value=6.4e-06  Score=64.47  Aligned_cols=86  Identities=10%  Similarity=0.104  Sum_probs=58.0

Q ss_pred             hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC-CHHHHHHHHHHhCCcEEEEeccCC
Q 043745           39 YYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV-ATEDAQSYAEREGLSFIETSALEA  117 (174)
Q Consensus        39 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~  117 (174)
                      ...++|.+++|....-..+...+.+++......   ++|++||+||+||.+.... ..++........|++++.+||.++
T Consensus       127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~  203 (358)
T 2rcn_A          127 IAANIDQIVIVSAILPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ  203 (358)
T ss_dssp             EEECCCEEEEEEESTTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred             HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            367999999887764333455566665544333   5788999999999753210 011223333456899999999999


Q ss_pred             CCHHHHHHHH
Q 043745          118 INVEKAFQTI  127 (174)
Q Consensus       118 ~~i~~v~~~l  127 (174)
                      .|++++...+
T Consensus       204 ~gl~~L~~~~  213 (358)
T 2rcn_A          204 DGLKPLEEAL  213 (358)
T ss_dssp             BTHHHHHHHH
T ss_pred             cCHHHHHHhc
Confidence            9999887643

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.54  E-value=4.3e-05  Score=60.52  Aligned_cols=38  Identities=11%  Similarity=-0.020  Sum_probs=24.0

Q ss_pred             EEEEEeCCCchhhhh-------hhHHhhccCCEEEEEEeCCChhh
Q 043745           20 KAQIWDTAGQERYRA-------ITSAYYRGALGALLVYDVTKPTT   57 (174)
Q Consensus        20 ~l~l~D~~G~~~~~~-------~~~~~~~~~d~ii~v~d~~~~~s   57 (174)
                      .+.|||++|...+.+       .+..+++++|++++|+|+.+.++
T Consensus        87 ~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~  131 (396)
T 2ohf_A           87 FLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDD  131 (396)
T ss_dssp             EEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred             ccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence            489999999887544       45677899999999999986443

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=97.49  E-value=0.00092  Score=52.90  Aligned_cols=42  Identities=7%  Similarity=0.081  Sum_probs=30.6

Q ss_pred             CCeEEEEEeCCCCC--CccCCCHHHHHHHHHHhC--CcEEEEeccC
Q 043745           75 NIVIMMIGNKTDLK--HLRAVATEDAQSYAEREG--LSFIETSALE  116 (174)
Q Consensus        75 ~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~  116 (174)
                      ..|+++++|+.|..  .......+.+++++...+  .+++.+||+.
T Consensus       224 ~kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~  269 (392)
T 1ni3_A          224 AKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAF  269 (392)
T ss_dssp             GSCEEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHH
T ss_pred             cCceEEEEEecchhhcccchHHHHHHHHHHHhcCCCCeEEEEEhHH
Confidence            38999999999832  112233677888887766  7899999875

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.19  E-value=0.0006  Score=55.68  Aligned_cols=101  Identities=17%  Similarity=0.117  Sum_probs=61.1

Q ss_pred             EEEEEEeCCCchhhh-hhh---HHh--hccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeE-EEEEeCCCCCCcc
Q 043745           19 IKAQIWDTAGQERYR-AIT---SAY--YRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVI-MMIGNKTDLKHLR   91 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~-~~~---~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~nK~Dl~~~~   91 (174)
                      +.+.|+||+|..... .++   ...  +-.+|.++||+|+.........   ...+..    .+|+ ++|.||.|.....
T Consensus       184 ~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~---a~~~~~----~~~i~gvVlNK~D~~~~~  256 (504)
T 2j37_W          184 FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ---AKAFKD----KVDVASVIVTKLDGHAKG  256 (504)
T ss_dssp             CCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH---HHHHHH----HHCCCCEEEECTTSCCCC
T ss_pred             CcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH---HHHHHh----hcCceEEEEeCCccccch
Confidence            568999999976321 111   111  2278999999999875432221   222222    1464 7889999986422


Q ss_pred             CCCHHHHHHHHHHhCCcE------------------EEEeccCCCC-HHHHHHHHHHH
Q 043745           92 AVATEDAQSYAEREGLSF------------------IETSALEAIN-VEKAFQTILSE  130 (174)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-i~~v~~~l~~~  130 (174)
                      .    ........++.++                  +.+|+..|.| +.++++++.+.
T Consensus       257 g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          257 G----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             T----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             H----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            1    1223344555544                  3468888888 88888887655

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=95.86  E-value=0.036  Score=44.45  Aligned_cols=86  Identities=19%  Similarity=0.092  Sum_probs=52.5

Q ss_pred             EEEEEEeCCCchhhhh-----hhH-HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC
Q 043745           19 IKAQIWDTAGQERYRA-----ITS-AYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA   92 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~-----~~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~   92 (174)
                      +.+.|+||+|......     +.. .....+|.++||+|+...+.....   ...+...   -.+..+|.||.|....  
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~---a~~f~~~---~~i~gVIlTKlD~~~~--  254 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ---ALAFKEA---TPIGSIIVTKLDGSAK--  254 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH---HHHHHHS---CTTEEEEEECCSSCSS--
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH---HHHHHhh---CCCeEEEEECCCCccc--
Confidence            4578999999643211     111 122367999999999875433222   2333322   2345678899998642  


Q ss_pred             CCHHHHHHHHHHhCCcEEEEec
Q 043745           93 VATEDAQSYAEREGLSFIETSA  114 (174)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~Sa  114 (174)
                        ...+.......+.|+.+++.
T Consensus       255 --gG~~ls~~~~~g~PI~fig~  274 (443)
T 3dm5_A          255 --GGGALSAVAATGAPIKFIGT  274 (443)
T ss_dssp             --HHHHHHHHHTTCCCEEEEEC
T ss_pred             --ccHHHHHHHHHCCCEEEEEc
Confidence              23455566678899888875

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=95.71  E-value=0.043  Score=38.55  Aligned_cols=85  Identities=11%  Similarity=-0.022  Sum_probs=54.9

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCeEEEEEeCCCCCCccCCCHH
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA--DSNIVIMMIGNKTDLKHLRAVATE   96 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~   96 (174)
                      +.+.|+|+++..  .......+..+|.++++...+...  ..+..++..+....  ..+.++.+|.|+.|....   ...
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~  148 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN  148 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence            457899999766  334455667799999999876543  55666666665433  235678999999985431   123


Q ss_pred             HHHHHHHHhCCcEE
Q 043745           97 DAQSYAEREGLSFI  110 (174)
Q Consensus        97 ~~~~~~~~~~~~~~  110 (174)
                      +..++.++++.+++
T Consensus       149 ~~~~~l~~~~~~vl  162 (206)
T 4dzz_A          149 VLKESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHHHTCCBC
T ss_pred             HHHHHHHHcCCcee
Confidence            45555556665544

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=95.45  E-value=0.085  Score=39.95  Aligned_cols=91  Identities=16%  Similarity=0.052  Sum_probs=56.4

Q ss_pred             EEEEEEeCCCchh--hhh-hhH-----HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCCC
Q 043745           19 IKAQIWDTAGQER--YRA-ITS-----AYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIV-IMMIGNKTDLKH   89 (174)
Q Consensus        19 ~~l~l~D~~G~~~--~~~-~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~   89 (174)
                      +.+.|+||+|...  ... +..     .....+|.+++|+|+......   ......+..    ..+ ..+|.||.|...
T Consensus       181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~~~~~~~----~~~i~gvVlnk~D~~~  253 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKA---YDLASKFNQ----ASKIGTIIITKMDGTA  253 (297)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred             CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHH---HHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence            4579999999876  321 111     124478999999998753222   122222222    244 667889999753


Q ss_pred             ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHH
Q 043745           90 LRAVATEDAQSYAEREGLSFIETSALEAINVEK  122 (174)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  122 (174)
                          .......++...+.++.+++  +|+++++
T Consensus       254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          254 ----KGGGALSAVAATGATIKFIG--TGEKIDE  280 (297)
T ss_dssp             ----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             ----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence                13345567778889988876  5666654

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=95.41  E-value=0.00077  Score=52.86  Aligned_cols=91  Identities=13%  Similarity=0.051  Sum_probs=50.9

Q ss_pred             EEEEeCCCchhhh--------hhhHHhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           21 AQIWDTAGQERYR--------AITSAYY--RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        21 l~l~D~~G~~~~~--------~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      +.++||||.....        .....++  +..+.++++++....--+..+.    .+......+.|+++++||.|....
T Consensus       214 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~----~l~~l~~~~~~~~~v~~k~d~~~~  289 (369)
T 3ec1_A          214 ATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLA----RLDYIKGGRRSFVCYMANELTVHR  289 (369)
T ss_dssp             CEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEESSSEEEEEEECTTSCEEE
T ss_pred             eEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEE----EEEEccCCCceEEEEecCCccccc
Confidence            6899999954221        1122222  6789999999974321111110    011122246899999999998653


Q ss_pred             cCCCHHHHHHHHHHhCCcEEEEeccC
Q 043745           91 RAVATEDAQSYAEREGLSFIETSALE  116 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~  116 (174)
                      ... ......+.+.+|..+...++..
T Consensus       290 ~~~-~~~~~~~~~~~g~~l~p~~~~~  314 (369)
T 3ec1_A          290 TKL-EKADSLYANQLGELLSPPSKRY  314 (369)
T ss_dssp             EEG-GGHHHHHHHHBTTTBCSSCGGG
T ss_pred             ccH-HHHHHHHHHhcCCccCCCCchh
Confidence            222 3334455566666555555543

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=95.03  E-value=0.31  Score=35.01  Aligned_cols=86  Identities=12%  Similarity=0.060  Sum_probs=57.9

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHH
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDA   98 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~   98 (174)
                      +.+.|+|+++...  ......+..+|.++++...+ ..++..+..++..+.........+.+|.|+.+...  ....   
T Consensus       119 yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~---  190 (245)
T 3ea0_A          119 YDYIIVDFGASID--HVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITS---  190 (245)
T ss_dssp             CSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCH---
T ss_pred             CCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCH---
Confidence            4578999987542  24455677899999998864 56677777777777655433456788899998653  2333   


Q ss_pred             HHHHHHhCCcEEEE
Q 043745           99 QSYAEREGLSFIET  112 (174)
Q Consensus        99 ~~~~~~~~~~~~~~  112 (174)
                      +.+.+.++.+++.+
T Consensus       191 ~~~~~~~~~~v~~~  204 (245)
T 3ea0_A          191 DEIEKVIGRPISKR  204 (245)
T ss_dssp             HHHHHHHTSCEEEE
T ss_pred             HHHHHHhCCCeEEE
Confidence            34455678777654

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=94.20  E-value=0.16  Score=40.68  Aligned_cols=90  Identities=16%  Similarity=0.059  Sum_probs=54.4

Q ss_pred             EEEEEEeCCCchh--hh----hhhHH--hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           19 IKAQIWDTAGQER--YR----AITSA--YYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        19 ~~l~l~D~~G~~~--~~----~~~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      +.+.|+||+|...  ..    .....  ..-..+.++||+|+...+.....   ...+....   .+..+|.||.|... 
T Consensus       180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~---a~~f~~~~---~~~gVIlTKlD~~a-  252 (433)
T 3kl4_A          180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL---ASRFHQAS---PIGSVIITKMDGTA-  252 (433)
T ss_dssp             CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH---HHHHHHHC---SSEEEEEECGGGCS-
T ss_pred             CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH---HHHHhccc---CCcEEEEecccccc-
Confidence            4577999999644  11    11111  11256899999999875433222   23333221   35678899999753 


Q ss_pred             cCCCHHHHHHHHHHhCCcEEEEeccCCCCH
Q 043745           91 RAVATEDAQSYAEREGLSFIETSALEAINV  120 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  120 (174)
                         ............+.|+.+++.  |+++
T Consensus       253 ---~~G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          253 ---KGGGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             ---CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             ---cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence               234455666678999988875  5543

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=94.17  E-value=0.45  Score=33.75  Aligned_cols=85  Identities=12%  Similarity=0.075  Sum_probs=54.2

Q ss_pred             EEEEEEeCCCc-hhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHH
Q 043745           19 IKAQIWDTAGQ-ERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATED   97 (174)
Q Consensus        19 ~~l~l~D~~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~   97 (174)
                      +.+.++|+++. ..  ......+..+|.+|++...+ ..++..+...+..+....  +.++.+|.|+.|....  ....+
T Consensus        68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~~~~~  140 (209)
T 3cwq_A           68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--KDGDE  140 (209)
T ss_dssp             CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--CHHHH
T ss_pred             CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--hHHHH
Confidence            44789999876 42  23344567899999998864 455666666666665532  4568899999986430  11344


Q ss_pred             HHHHHHHhCCcEE
Q 043745           98 AQSYAEREGLSFI  110 (174)
Q Consensus        98 ~~~~~~~~~~~~~  110 (174)
                      ..+..++++.+++
T Consensus       141 ~~~~l~~~g~~v~  153 (209)
T 3cwq_A          141 ARQLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHHHTTCCBC
T ss_pred             HHHHHHHcCCchh
Confidence            5555555665544

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=92.99  E-value=0.79  Score=33.38  Aligned_cols=68  Identities=15%  Similarity=0.169  Sum_probs=42.5

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHH---HHHHHhhcCCCCeEE-EEEeCCCCC
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRW---LKELRDHADSNIVIM-MIGNKTDLK   88 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~---~~~i~~~~~~~~pii-lv~nK~Dl~   88 (174)
                      .+.+.|+|+++....  .....+..+|.+|++...+. .++..+..+   +..+......+.+++ +|.|+.|..
T Consensus       111 ~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~  182 (257)
T 1wcv_1          111 GYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR  182 (257)
T ss_dssp             TCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred             CCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence            355789999876432  23344567999999998764 344444443   333333223356764 889999864

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=92.94  E-value=1.1  Score=35.74  Aligned_cols=83  Identities=18%  Similarity=0.057  Sum_probs=48.8

Q ss_pred             EEEEEEeCCCchhhhh-h---hHH--hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-e-EEEEEeCCCCCCc
Q 043745           19 IKAQIWDTAGQERYRA-I---TSA--YYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNI-V-IMMIGNKTDLKHL   90 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~-~---~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-p-iilv~nK~Dl~~~   90 (174)
                      +.+.|+||+|...... +   ...  .+..+|.++||+|+.....   .......+   .. .+ | ..+|.||.|....
T Consensus       181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~---~~-~~~~i~gvVlnK~D~~~~  253 (432)
T 2v3c_C          181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF---KE-AVGEIGSIIVTKLDGSAK  253 (432)
T ss_dssp             CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH---HT-TSCSCEEEEEECSSSCST
T ss_pred             CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH---hh-cccCCeEEEEeCCCCccc
Confidence            4679999999764321 1   111  1226899999999876542   11122222   21 34 5 7889999998531


Q ss_pred             cCCCHHHHHHHHHHhCCcEEEE
Q 043745           91 RAVATEDAQSYAEREGLSFIET  112 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~  112 (174)
                          ......+....+.++.++
T Consensus       254 ----~g~~l~~~~~~~~pi~~i  271 (432)
T 2v3c_C          254 ----GGGALSAVAETKAPIKFI  271 (432)
T ss_dssp             ----THHHHHHHHHSSCCEEEE
T ss_pred             ----hHHHHHHHHHHCCCEEEe
Confidence                123344666777776655

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=92.87  E-value=0.55  Score=34.40  Aligned_cols=90  Identities=12%  Similarity=0.154  Sum_probs=53.1

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE-EEEeCCCCCC----cc-
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM-MIGNKTDLKH----LR-   91 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~Dl~~----~~-   91 (174)
                      .+.+.|+|+++...........+..+|.+|++...+. .+...+...+..+...   +.+++ +|.|+.|...    .+ 
T Consensus       128 ~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~  203 (262)
T 2ph1_A          128 ELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQE-LTAVIVEKAINMAEET---NTSVLGLVENMSYFVCPNCGHKS  203 (262)
T ss_dssp             SCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSS-CCHHHHHHHHHHHHTT---TCCEEEEEETTCCEECTTTCCEE
T ss_pred             CCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCcc-chHHHHHHHHHHHHhC---CCCEEEEEECCCccCCccccccc
Confidence            3567899998754322111122236899999987653 4556666666655543   45666 8899987421    11 


Q ss_pred             CC-CHHHHHHHHHHhCCcEEE
Q 043745           92 AV-ATEDAQSYAEREGLSFIE  111 (174)
Q Consensus        92 ~~-~~~~~~~~~~~~~~~~~~  111 (174)
                      .+ ......++.+.++.+++.
T Consensus       204 ~~~~~~~~~~~~~~~g~~~~~  224 (262)
T 2ph1_A          204 YIFGEGKGESLAKKYNIGFFT  224 (262)
T ss_dssp             CTTCCCCHHHHHHHTTCSEEE
T ss_pred             ccccccHHHHHHHHcCCCeEE
Confidence            11 122355667778887664

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=91.67  E-value=0.77  Score=33.54  Aligned_cols=64  Identities=9%  Similarity=-0.047  Sum_probs=44.9

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTD   86 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D   86 (174)
                      +.+.|+|+++...  ......+..+|.+|++...+ ..+...+...+..+..... +.++.+|.|+.+
T Consensus       145 yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~-~~s~~~~~~~~~~l~~~~~-~~~~~vv~N~~~  208 (267)
T 3k9g_A          145 YDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAE-KWAVESLDLFNFFVRKLNL-FLPIFLIITRFK  208 (267)
T ss_dssp             CSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESC-TTHHHHHHHHHHHHHTTTC-CCCEEEEEEEEC
T ss_pred             CCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCC-hHHHHHHHHHHHHHHHHhc-cCCEEEEEeccc
Confidence            4578999987542  23445566799999999874 4566666666666655533 567889999994

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=91.51  E-value=2.3  Score=30.78  Aligned_cols=83  Identities=10%  Similarity=-0.017  Sum_probs=53.0

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHH
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDA   98 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~   98 (174)
                      +.+.|+|+++...  ......+..+|.+|++...+ ..+...+...+..+....  ...+-+|.|+.+.....    ...
T Consensus       111 yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~~----~~~  181 (263)
T 1hyq_A          111 TDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERLG--TKVLGVVVNRITTLGIE----MAK  181 (263)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHHT--CEEEEEEEEEECTTTHH----HHH
T ss_pred             CCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCC-hhHHHHHHHHHHHHHhcC--CCeeEEEEccCCccccc----chH
Confidence            4578999987543  33444567899999998754 445666666666665542  24566888999864321    345


Q ss_pred             HHHHHHhCCcEE
Q 043745           99 QSYAEREGLSFI  110 (174)
Q Consensus        99 ~~~~~~~~~~~~  110 (174)
                      .++.+.++.+++
T Consensus       182 ~~~~~~~~~~~~  193 (263)
T 1hyq_A          182 NEIEAILEAKVI  193 (263)
T ss_dssp             HHHHHHTTSCEE
T ss_pred             HHHHHHhCCCeE
Confidence            555666776644

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=91.31  E-value=0.38  Score=34.87  Aligned_cols=66  Identities=11%  Similarity=0.024  Sum_probs=45.0

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC------CCCeEEEEEeCCCC
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD------SNIVIMMIGNKTDL   87 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~------~~~piilv~nK~Dl   87 (174)
                      +.+.|+|+++...  ......+..+|.+|++.+.+ ..++..+..++..+.....      ....+.+|.|+.|.
T Consensus       114 yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~  185 (260)
T 3q9l_A          114 FEFIVCDSPAGIE--TGALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP  185 (260)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSS-HHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred             CCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCC-hhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence            5578999987543  34555667899999999864 4566666666666544321      12577889999985

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=91.07  E-value=2.4  Score=30.06  Aligned_cols=83  Identities=8%  Similarity=0.013  Sum_probs=52.3

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHH
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDA   98 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~   98 (174)
                      +.+.|+|+++...  ......+..+|.+|++...+ ..++..+...+..+....  ...+.+|.|+.+.....    ...
T Consensus       112 yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~~----~~~  182 (237)
T 1g3q_A          112 FDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKAG--LAILGFVLNRYGRSDRD----IPP  182 (237)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHTT--CEEEEEEEEEETSCTTC----CCH
T ss_pred             CCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCC-cccHHHHHHHHHHHHhCC--CceEEEEEecCCcccch----hHH
Confidence            4578999987543  33445667899999998864 456666666666665542  24566788999864322    123


Q ss_pred             HHHHHHhCCcEE
Q 043745           99 QSYAEREGLSFI  110 (174)
Q Consensus        99 ~~~~~~~~~~~~  110 (174)
                      .++.+.++.+++
T Consensus       183 ~~~~~~~~~~~~  194 (237)
T 1g3q_A          183 EAAEDVMEVPLL  194 (237)
T ss_dssp             HHHHHHHCSCEE
T ss_pred             HHHHHHhCccce
Confidence            344455676654

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=88.67  E-value=4.9  Score=31.78  Aligned_cols=106  Identities=10%  Similarity=0.131  Sum_probs=56.5

Q ss_pred             EEEEEeCCCchhh----hhhh-HHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC------
Q 043745           20 KAQIWDTAGQERY----RAIT-SAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK------   88 (174)
Q Consensus        20 ~l~l~D~~G~~~~----~~~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~------   88 (174)
                      .+.+||++|....    .... ..-+...+.+++ ++....+ -+++ .+...+...   +.|+++|.||.|+.      
T Consensus       121 ~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~-kqrv-~la~aL~~~---~~p~~lV~tkpdlllLDEPt  194 (413)
T 1tq4_A          121 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRFK-KNDI-DIAKAISMM---KKEFYFVRTKVDSDITNEAD  194 (413)
T ss_dssp             TEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCCC-HHHH-HHHHHHHHT---TCEEEEEECCHHHHHHHHHT
T ss_pred             CeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCcc-HHHH-HHHHHHHhc---CCCeEEEEecCcccccCccc
Confidence            4789999885321    1111 112334566665 7776211 1111 122223332   57999999999862      


Q ss_pred             -CccCCCHHH----HHHHH----HHhC---CcEEEEec--cCCCCHHHHHHHHHHHH
Q 043745           89 -HLRAVATED----AQSYA----EREG---LSFIETSA--LEAINVEKAFQTILSEI  131 (174)
Q Consensus        89 -~~~~~~~~~----~~~~~----~~~~---~~~~~~Sa--~~~~~i~~v~~~l~~~i  131 (174)
                       .-......+    ++++.    .+.+   -.++.+|+  ..+.|++++.+.+.+.+
T Consensus       195 sgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~L  251 (413)
T 1tq4_A          195 GEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL  251 (413)
T ss_dssp             TCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence             101122232    33332    1222   25788999  66667999888887664

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=88.10  E-value=1.9  Score=30.67  Aligned_cols=64  Identities=13%  Similarity=-0.012  Sum_probs=43.5

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTD   86 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D   86 (174)
                      .+.+.|+|+++....  .....+..+|.+|++...+ ..++..+..+...+.....  ..+.+|.|+.+
T Consensus       131 ~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~~~--~~~~~v~N~~~  194 (254)
T 3kjh_A          131 KKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPN-LNSIKTGLNIEKLAGDLGI--KKVRYVINKVR  194 (254)
T ss_dssp             CCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSS-HHHHHHHHHHHHHHHHHTC--SCEEEEEEEEC
T ss_pred             CCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCC-HHHHHHHHHHHHHHHHcCC--ccEEEEEeCCC
Confidence            355789999875432  4455568899999999874 4566666665554444432  45778889998

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=87.64  E-value=3.6  Score=30.41  Aligned_cols=83  Identities=10%  Similarity=0.116  Sum_probs=46.8

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHH---HHHHHhhcCCCCeE-EEEEeCCCCCCccCCC
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRW---LKELRDHADSNIVI-MMIGNKTDLKHLRAVA   94 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~---~~~i~~~~~~~~pi-ilv~nK~Dl~~~~~~~   94 (174)
                      +.+.|+|+++.....  ....+..+|.+|++...+. .++..+...   +..+......+.++ -+|.|+.|....  ..
T Consensus       155 yD~IiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~~--~~  229 (298)
T 2oze_A          155 YDLIIIDTVPTPSVY--TNNAIVASDYVMIPLQAEE-ESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSA--TI  229 (298)
T ss_dssp             CSEEEEEECSSCSHH--HHHHHHHCSEEEEEECGGG-CCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTCH--HH
T ss_pred             CCEEEEECCCCccHH--HHHHHHHCCeEEEEecCcH-HHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCcH--HH
Confidence            457899998765332  2223446999999988653 344444443   33332222235674 488899986431  12


Q ss_pred             HHHHHHHHHHhC
Q 043745           95 TEDAQSYAEREG  106 (174)
Q Consensus        95 ~~~~~~~~~~~~  106 (174)
                      ....+++.+.++
T Consensus       230 ~~~~~~~~~~~~  241 (298)
T 2oze_A          230 KSNLEELYKQHK  241 (298)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhc
Confidence            234445555554

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=85.57  E-value=0.033  Score=43.56  Aligned_cols=88  Identities=8%  Similarity=0.046  Sum_probs=47.9

Q ss_pred             EEEEeCCCchhhhh--------hhHHh--hccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           21 AQIWDTAGQERYRA--------ITSAY--YRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        21 l~l~D~~G~~~~~~--------~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      +.++||||......        ....+  .+..+.++|+++....--+..+    ..+........|+++++||.|....
T Consensus       213 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l----~~~d~l~~~~~~~~~v~nk~d~~~~  288 (368)
T 3h2y_A          213 SSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGL----ARFDYVSGGRRAFTCHFSNRLTIHR  288 (368)
T ss_dssp             CEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTT----EEEEEEESSSEEEEEEECTTSCEEE
T ss_pred             eEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcce----EEEEEecCCCceEEEEecCcccccc
Confidence            68999999643211        11222  2577889999887422111111    0011122246899999999998653


Q ss_pred             cCCCHHHHHHHHHHhCCcEEEEe
Q 043745           91 RAVATEDAQSYAEREGLSFIETS  113 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~S  113 (174)
                      .. .......+.+.+|..+...+
T Consensus       289 ~~-~~~~~~~~~~~~g~~l~p~~  310 (368)
T 3h2y_A          289 TK-LEKADELYKNHAGDLLSPPT  310 (368)
T ss_dssp             EE-HHHHHHHHHHHBTTTBCSSC
T ss_pred             cc-HHHHHHHHHHHhCCccCCCc
Confidence            22 23334445555665544444

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A

Probab=83.64  E-value=1.8  Score=32.04  Aligned_cols=68  Identities=15%  Similarity=0.126  Sum_probs=41.3

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHH---HHH-------------H---HHHHhh-cCCC-Ce
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV---SRW-------------L---KELRDH-ADSN-IV   77 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~---~~~-------------~---~~i~~~-~~~~-~p   77 (174)
                      +.+.|+|+++..  .......+..+|.+|++...+. .++..+   ..+             +   ..+... .... .+
T Consensus       104 yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  180 (286)
T 2xj4_A          104 CDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSF-VDFDMLGTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAMD  180 (286)
T ss_dssp             CSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSH-HHHTTTEEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCCE
T ss_pred             CCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCc-cHHHHHHHHHHHhhhccccchhhhhhhcchhhhhhccCCcccc
Confidence            457899998865  3445566788999999998753 222211   111             2   222222 0225 67


Q ss_pred             EEEEEeCCCCCC
Q 043745           78 IMMIGNKTDLKH   89 (174)
Q Consensus        78 iilv~nK~Dl~~   89 (174)
                      +.+|.|+.|...
T Consensus       181 ~~vV~N~~~~~~  192 (286)
T 2xj4_A          181 WVVLRNRLATTE  192 (286)
T ss_dssp             EEEEEECCTTCC
T ss_pred             EEEEEeeecCCC
Confidence            889999998643

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=83.37  E-value=11  Score=27.25  Aligned_cols=87  Identities=14%  Similarity=0.126  Sum_probs=52.6

Q ss_pred             EEEEEEeCCCchhhhhhh-HHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeE-EEEEeCCCCCCccCCCH
Q 043745           19 IKAQIWDTAGQERYRAIT-SAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVI-MMIGNKTDLKHLRAVAT   95 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~pi-ilv~nK~Dl~~~~~~~~   95 (174)
                      +.+.|+|++|......+. ......+|.+|++...+ ..++..+...+..+..... .+.++ -+|.|+.+..    ...
T Consensus       116 yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~----~~~  190 (269)
T 1cp2_A          116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA----NEY  190 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS----CCH
T ss_pred             CCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCc-hhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc----hhH
Confidence            557899998754322221 12224699999998864 4556666555565554332 24554 5788998632    234


Q ss_pred             HHHHHHHHHhCCcEE
Q 043745           96 EDAQSYAEREGLSFI  110 (174)
Q Consensus        96 ~~~~~~~~~~~~~~~  110 (174)
                      +....+.+.++.+++
T Consensus       191 ~~~~~l~~~~~~~v~  205 (269)
T 1cp2_A          191 ELLDAFAKELGSQLI  205 (269)
T ss_dssp             HHHHHHHHHHTCCEE
T ss_pred             HHHHHHHHHcCCccc
Confidence            556666777777655

>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}

Probab=83.20  E-value=6.8  Score=30.10  Aligned_cols=41  Identities=7%  Similarity=0.029  Sum_probs=27.4

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHH
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV   61 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~   61 (174)
                      .+.+.|+|+++.-  .......+..+|.+|++...+ ..++..+
T Consensus       153 ~yD~VIID~pP~l--~~~~~~aL~~aD~viip~~~~-~~s~~~~  193 (361)
T 3pg5_A          153 RYDVIFFDVGPSL--GPFNRTVLLGCDAFVTPTATD-LFSFHAF  193 (361)
T ss_dssp             CCSEEEEECCSCC--SHHHHHHHTTCSEEEEEECCS-HHHHHHH
T ss_pred             CCCEEEEECCCCc--CHHHHHHHHHCCEEEEEecCC-hHHHHHH
Confidence            3567999998754  334445566799999999875 3444333

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=81.98  E-value=13  Score=29.60  Aligned_cols=83  Identities=17%  Similarity=0.085  Sum_probs=46.3

Q ss_pred             EEEEEEeCCCchhhhh-hhH-----HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCCCcc
Q 043745           19 IKAQIWDTAGQERYRA-ITS-----AYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIV-IMMIGNKTDLKHLR   91 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~-~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~   91 (174)
                      +.+.|+||+|...... +..     ..+..++.+++|+|+........   ....+..    .++ .-+|.||.|.....
T Consensus       184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~---~~~~f~~----~l~i~gvVlnK~D~~~~~  256 (433)
T 2xxa_A          184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAAN---TAKAFNE----ALPLTGVVLTKVDGDARG  256 (433)
T ss_dssp             CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHH---HHHHHHH----HSCCCCEEEECTTSSSCC
T ss_pred             CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHH---HHHHHhc----cCCCeEEEEecCCCCccH
Confidence            4578999999754321 111     12346899999999875433222   2222222    133 33678999975321


Q ss_pred             CCCHHHHHHHHHHhCCcEEEE
Q 043745           92 AVATEDAQSYAEREGLSFIET  112 (174)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~  112 (174)
                          .....+....+.++.++
T Consensus       257 ----g~~l~i~~~~~~Pi~~i  273 (433)
T 2xxa_A          257 ----GAALSIRHITGKPIKFL  273 (433)
T ss_dssp             ----THHHHHHHHHCCCEEEE
T ss_pred             ----HHHHHHHHHHCCCeEEE
Confidence                23345566667664443

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=80.58  E-value=5.1  Score=29.51  Aligned_cols=66  Identities=9%  Similarity=0.062  Sum_probs=40.8

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE-EEEeCCCCCC
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM-MIGNKTDLKH   89 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~Dl~~   89 (174)
                      +.+.|+|+++.-... ........+|.+|+|..... .+...+...+..+...   +.+++ +|.|+.|...
T Consensus       192 yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~-~~~~~~~~~~~~l~~~---~~~~~GvVlN~~~~~~  258 (271)
T 3bfv_A          192 YNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSEN-NNKDEVKKGKELIEAT---GAKLLGVVLNRMPKDK  258 (271)
T ss_dssp             CSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTS-CCHHHHHHHHHHHHTT---TCEEEEEEEEEECC--
T ss_pred             CCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCC-CcHHHHHHHHHHHHhC---CCCEEEEEEeCCcCCC
Confidence            357899998854321 12233456899999998754 3455555555555443   45655 8889998643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	174
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	3e-38
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	4e-35
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	4e-34
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	8e-33
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	9e-33
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	6e-31
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	1e-30
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	9e-30
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	3e-29
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	1e-27
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	1e-27
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	2e-27
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	1e-26
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	1e-24
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	6e-24
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	5e-22
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	1e-21
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	2e-21
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-19
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	1e-19
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	4e-19
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	5e-19
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	8e-19
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	1e-18
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	3e-18
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	3e-18
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	8e-18
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	1e-17
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-17
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	2e-17
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	3e-17
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	5e-17
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	5e-17
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	1e-16
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	2e-15
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	1e-14
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	1e-14
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	2e-14
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	2e-14
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	1e-13
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-13
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	1e-12
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	2e-12
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	1e-11
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	3e-11
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	4e-11
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	6e-11
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	3e-10
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	6e-08
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	2e-07
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	4e-07
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	6e-07
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	1e-06
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	8e-06

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (318), Expect = 3e-38
 Identities = 94/132 (71%), Positives = 118/132 (89%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR 69
              QV+G+TIKAQIWDTAGQERYR ITSAYYRGA+GALLVYD+ K  T+ENV RWLKELR
Sbjct: 44  RSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR 103

Query: 70  DHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILS 129
           DHADSNIVIM++GNK+DL+HLRAV T++A+++AE+  LSFIETSAL++ NVE+AF+ IL+
Sbjct: 104 DHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILT 163

Query: 130 EIYRIISKKSLS 141
           EIYRI+S+K ++
Sbjct: 164 EIYRIVSQKQIA 175

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  119 bits (298), Expect = 4e-35
 Identities = 57/127 (44%), Positives = 86/127 (67%)

Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRD 70
             +++G+ IK QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +
Sbjct: 47  TIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEE 106

Query: 71  HADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE 130
           HA +++  M++GNK D+   R V+ E  +  A   G+ F+ETSA   INVE AF T+  +
Sbjct: 107 HASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARD 166

Query: 131 IYRIISK 137
           I   + K
Sbjct: 167 IKAKMDK 173

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (291), Expect = 4e-34
 Identities = 56/124 (45%), Positives = 80/124 (64%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR 69
               V+G  +K Q+WDTAGQER+R++T AYYR A   LL+YDVT   +F+N+  WL E+ 
Sbjct: 47  KVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIH 106

Query: 70  DHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILS 129
           ++A  ++ +M++GNK D  H R V  ED +  A+  GL F+ETSA   +NV+ AF  I  
Sbjct: 107 EYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAK 166

Query: 130 EIYR 133
           E+ R
Sbjct: 167 ELKR 170

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  112 bits (282), Expect = 8e-33
 Identities = 52/122 (42%), Positives = 80/122 (65%), Gaps = 1/122 (0%)

Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
             + G+ +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   TF N+ +W K + +H
Sbjct: 44  VDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEH 103

Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           A+    ++++GNK+D++  R V  +  ++ A+  G+ FIE+SA    NV + F T+   I
Sbjct: 104 ANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 162

Query: 132 YR 133
             
Sbjct: 163 QE 164

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 9e-33
 Identities = 62/123 (50%), Positives = 85/123 (69%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR 69
              +V G+ IK QIWDTAGQER+RA+T +YYRGA GAL+VYD+T+ +T+ ++S WL + R
Sbjct: 44  RIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDAR 103

Query: 70  DHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILS 129
           +  + N VI++IGNK DL+  R V  E+A+ +AE  GL F+E SA    NVE AF     
Sbjct: 104 NLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK 163

Query: 130 EIY 132
           +IY
Sbjct: 164 KIY 166

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (270), Expect = 6e-31
 Identities = 67/128 (52%), Positives = 92/128 (71%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR 69
               ++G+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD+T+  TF +++ WL++ R
Sbjct: 43  RMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDAR 102

Query: 70  DHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILS 129
            H+ SN+VIM+IGNK+DL+  R V  E+ +++A   GL F+ETSA  A NVE+AF     
Sbjct: 103 QHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAK 162

Query: 130 EIYRIISK 137
           EIYR I +
Sbjct: 163 EIYRKIQQ 170

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  108 bits (269), Expect = 1e-30
 Identities = 62/148 (41%), Positives = 99/148 (66%), Gaps = 4/148 (2%)

Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRD 70
             +++G+T+K QIWDTAGQER+R ITS+YYRG+ G ++VYDVT   +F  V  WL+E+  
Sbjct: 47  TVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDR 106

Query: 71  HADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE 130
           +A S ++ +++GNK DLK  R V  + A+ +A+   + F+ETSAL++ NVE AF T+  +
Sbjct: 107 YATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQ 166

Query: 131 IYRIISKKSL---SSGEPAPSNIK-EGQ 154
           I   +S+++L   +  +    N+  +GQ
Sbjct: 167 IKESMSQQNLNETTQKKEDKGNVNLKGQ 194

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  104 bits (261), Expect = 9e-30
 Identities = 49/122 (40%), Positives = 77/122 (63%)

Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
                + IK QIWDTAGQERYR IT+AYYRGA+G +L+YD+T   +F  V  W  +++ +
Sbjct: 47  IYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTY 106

Query: 72  ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           +  N  ++++GNK D++  R V++E  +  A+  G  F E SA + INV++ F+ ++  I
Sbjct: 107 SWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166

Query: 132 YR 133
             
Sbjct: 167 CE 168

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 3e-29
 Identities = 47/121 (38%), Positives = 78/121 (64%)

Query: 11  DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRD 70
             ++ G  +K QIWDTAGQER+R+IT +YYR A   +L YD+T   +F  +  WL+E+  
Sbjct: 46  TVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQ 105

Query: 71  HADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE 130
           +A + ++ +++GNK DL   R V+ + A+ ++E + + ++ETSA E+ NVEK F  +   
Sbjct: 106 YASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACR 165

Query: 131 I 131
           +
Sbjct: 166 L 166

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.3 bits (246), Expect = 1e-27
 Identities = 46/122 (37%), Positives = 80/122 (65%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR 69
               +E RTI+ Q+WDTAGQER+R++  +Y R +  A++VYD+T   +F+  ++W+ ++R
Sbjct: 40  KTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVR 99

Query: 70  DHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILS 129
               S+++IM++GNKTDL   R V+ E+ +  A+   + FIETSA    NV++ F+ + +
Sbjct: 100 TERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA 159

Query: 130 EI 131
            +
Sbjct: 160 AL 161

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =   99 bits (248), Expect = 1e-27
 Identities = 49/130 (37%), Positives = 79/130 (60%), Gaps = 1/130 (0%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR 69
                +   +  Q+WDTAGQER+R++T+A++R A+G LL++D+T   +F NV  W+ +L+
Sbjct: 55  NGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ 114

Query: 70  DHADSN-IVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTIL 128
            +A      I++IGNK DL   R V    A+  A++ G+ + ETSA    NVEKA +T+L
Sbjct: 115 ANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLL 174

Query: 129 SEIYRIISKK 138
             I + + + 
Sbjct: 175 DLIMKRMEQC 184

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.5 bits (247), Expect = 2e-27
 Identities = 47/124 (37%), Positives = 68/124 (54%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR 69
               V+G   K  IWDTAGQER+R +T +YYRGA G +LVYDVT+  TF  +  WL EL 
Sbjct: 47  KTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELE 106

Query: 70  DHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILS 129
            +   N ++ M+      K  R V   +   +A +  + FIE SA     V+ AF+ ++ 
Sbjct: 107 TYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVE 166

Query: 130 EIYR 133
           +I +
Sbjct: 167 KIIQ 170

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.3 bits (241), Expect = 1e-26
 Identities = 60/129 (46%), Positives = 79/129 (61%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR 69
               V G+ +K QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+  ++ WL + R
Sbjct: 45  KIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDAR 104

Query: 70  DHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILS 129
             A  NIVI++ GNK DL   R V   +A  +A+   L F+ETSAL   NVE+AF     
Sbjct: 105 MLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCAR 164

Query: 130 EIYRIISKK 138
           +I   I   
Sbjct: 165 KILNKIESG 173

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.0 bits (227), Expect = 1e-24
 Identities = 55/124 (44%), Positives = 79/124 (63%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR 69
               ++  T+K +IWDTAGQERY ++   YYRGA  A++VYD+T   +F     W+KEL+
Sbjct: 46  QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ 105

Query: 70  DHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILS 129
             A  NIVI + GNK DL + RAV  ++AQSYA+   L F+ETSA  ++NV + F  I  
Sbjct: 106 RQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165

Query: 130 EIYR 133
           ++ +
Sbjct: 166 KLPK 169

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.0 bits (222), Expect = 6e-24
 Identities = 47/123 (38%), Positives = 72/123 (58%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR 69
               + G+ +   IWDTAGQER+ A+   YYR + GA+LVYD+T   +F+ V  W+KELR
Sbjct: 43  KKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELR 102

Query: 70  DHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILS 129
               + I + ++GNK DL+  R V+ ++A+SYAE  G     TSA +   +E+ F  +  
Sbjct: 103 KMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCK 162

Query: 130 EIY 132
            + 
Sbjct: 163 RMI 165

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.0 bits (209), Expect = 5e-22
 Identities = 31/124 (25%), Positives = 65/124 (52%), Gaps = 1/124 (0%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR 69
            + +V+      +I DTAG E++ ++   Y +   G +LVY +    +F+++     ++ 
Sbjct: 42  KEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQII 101

Query: 70  D-HADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTIL 128
                  + ++++GNK DL+  R V++ + ++ AE  G  F+ETSA     V++ F  I+
Sbjct: 102 RVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161

Query: 129 SEIY 132
            ++ 
Sbjct: 162 RQMN 165

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 84.2 bits (207), Expect = 1e-21
 Identities = 42/125 (33%), Positives = 74/125 (59%), Gaps = 1/125 (0%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-L 68
               ++G  ++  I DTAGQE Y AI   Y+R   G L V+ +T+  +F   + + ++ L
Sbjct: 43  KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL 102

Query: 69  RDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTIL 128
           R   D N+  +++GNK+DL+  R V+ E+A++ A++  ++++ETSA    NV+K F  ++
Sbjct: 103 RVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLM 162

Query: 129 SEIYR 133
            EI  
Sbjct: 163 REIRA 167

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.8 bits (206), Expect = 2e-21
 Identities = 48/127 (37%), Positives = 76/127 (59%), Gaps = 6/127 (4%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR 69
            D +V+G  +  QIWDTAGQER+R++ + +YRG+   LL + V    +F+N+S W KE  
Sbjct: 46  KDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFI 105

Query: 70  DHADS----NIVIMMIGNKTDLKHLRAVATEDAQSYAEREG-LSFIETSALEAINVEKAF 124
            +AD     +   +++GNK D+   R V+TE+AQ++    G   + ETSA +A NV  AF
Sbjct: 106 YYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 164

Query: 125 QTILSEI 131
           +  +  +
Sbjct: 165 EEAVRRV 171

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 79.2 bits (194), Expect = 1e-19
 Identities = 22/126 (17%), Positives = 43/126 (34%), Gaps = 4/126 (3%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKEL- 68
               V  + +K  +WD  GQ++ R +   YY G  G + V D       +   + L  + 
Sbjct: 47  NVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRII 106

Query: 69  RDHADSNIVIMMIGNKTDLKHLR---AVATEDAQSYAEREGLSFIETSALEAINVEKAFQ 125
            D    + +I++  NK DL        +  +   +           + A     + +   
Sbjct: 107 NDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLT 166

Query: 126 TILSEI 131
            + S  
Sbjct: 167 WLTSNY 172

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.9 bits (193), Expect = 1e-19
 Identities = 51/110 (46%), Positives = 69/110 (62%)

Query: 22  QIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMI 81
            IWDTAG ER+RA+   YYRG+  A++VYD+TK  TF  +  W++ELR H   +IV+ + 
Sbjct: 56  LIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIA 115

Query: 82  GNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           GNK DL  +R V   DA+ YA+     F+ETSA  AIN+ + F  I   I
Sbjct: 116 GNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.4 bits (189), Expect = 4e-19
 Identities = 52/113 (46%), Positives = 69/113 (61%), Gaps = 3/113 (2%)

Query: 22  QIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMI 81
           +IWDTAGQER+ ++   YYR A  AL+VYDVTKP +F     W+KEL + A  +I+I ++
Sbjct: 55  EIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALV 114

Query: 82  GNKTDLKH---LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           GNK D+      R VA E+ +  AE +GL F ETSA    NV   F  I  +I
Sbjct: 115 GNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.7 bits (190), Expect = 5e-19
 Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 13/135 (9%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR 69
            +  V+G+ +   +WDTAGQE Y  +    Y     +L+ + +  P +FENV        
Sbjct: 44  ANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV 103

Query: 70  DHADSNIVIMMIGNKTDLKHLRAVATE------------DAQSYAEREG-LSFIETSALE 116
            H   N  I+++G K DL+  +    +               + A+  G + ++E SAL 
Sbjct: 104 RHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 163

Query: 117 AINVEKAFQTILSEI 131
              ++  F   +  +
Sbjct: 164 QRGLKTVFDEAIRAV 178

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.4 bits (189), Expect = 8e-19
 Identities = 29/142 (20%), Positives = 51/142 (35%), Gaps = 13/142 (9%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR 69
               + G      ++DTAGQE Y  +    Y      L+ + V  P++FENV        
Sbjct: 42  VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 101

Query: 70  DHADSNIVIMMIGNKTDLKHLRAVA------------TEDAQSYAER-EGLSFIETSALE 116
            H       +++G + DL+   +               E A+  A   + + ++E SAL 
Sbjct: 102 THHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALT 161

Query: 117 AINVEKAFQTILSEIYRIISKK 138
              ++  F   +         K
Sbjct: 162 QKGLKNVFDEAILAALEPPEPK 183

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.6 bits (187), Expect = 1e-18
 Identities = 40/113 (35%), Positives = 64/113 (56%), Gaps = 2/113 (1%)

Query: 22  QIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMM 80
            I DTAGQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   D  ++ +++
Sbjct: 54  DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL 113

Query: 81  IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133
           +GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI +
Sbjct: 114 VGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (185), Expect = 3e-18
 Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 13/129 (10%)

Query: 16  GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSN 75
           G+     ++DTAGQE Y  +    Y      L+ + V  P +F+NV             N
Sbjct: 54  GKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPN 113

Query: 76  IVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALEAINVEK 122
           +  ++IG + DL               + +  E  Q  A+  G   ++E SAL    ++ 
Sbjct: 114 VPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKT 173

Query: 123 AFQTILSEI 131
            F   +  I
Sbjct: 174 VFDEAIIAI 182

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.1 bits (183), Expect = 3e-18
 Identities = 41/126 (32%), Positives = 68/126 (53%), Gaps = 1/126 (0%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-L 68
               ++ R  +  I DTAGQE + A+   Y R   G LLV+ VT   +FE + ++ ++ L
Sbjct: 44  KQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQIL 103

Query: 69  RDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTIL 128
           R        +++IGNK DL H R V  E+ Q  A +  ++++E SA   +NV++AF  ++
Sbjct: 104 RVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELV 163

Query: 129 SEIYRI 134
             I + 
Sbjct: 164 RVIRKF 169

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.3 bits (181), Expect = 8e-18
 Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 4/135 (2%)

Query: 3   QPRLGKLCDFQVEG--RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFEN 60
            P +      QVE   +    +I DTAG E++ A+   Y +   G  LVY +T  +TF +
Sbjct: 33  DPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFND 92

Query: 61  VSRWLK-ELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAER-EGLSFIETSALEAI 118
           +    +  LR     ++ ++++GNK DL+  R V  E  Q+ A +    +F+E+SA   I
Sbjct: 93  LQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKI 152

Query: 119 NVEKAFQTILSEIYR 133
           NV + F  ++ +I R
Sbjct: 153 NVNEIFYDLVRQINR 167

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.9 bits (180), Expect = 1e-17
 Identities = 43/123 (34%), Positives = 69/123 (56%), Gaps = 5/123 (4%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERY-RAITSAYYRGALGALLVYDVTKPTTFENVSRWLKEL 68
               ++G  IK Q+WDTAGQER+ +++   YYR     + VYD+T   +F ++  W++E 
Sbjct: 42  RAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEEC 101

Query: 69  RDHADSN-IVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEA---INVEKAF 124
           + H  +N I  +++GNK DL+    V T+ AQ +A+   +   ETSA       +VE  F
Sbjct: 102 KQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIF 161

Query: 125 QTI 127
            T+
Sbjct: 162 MTL 164

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.5 bits (179), Expect = 1e-17
 Identities = 40/126 (31%), Positives = 68/126 (53%), Gaps = 2/126 (1%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLK-EL 68
              +++ +     + DTAGQE + A+   Y R   G L+VY VT   +FE+V R+ +  L
Sbjct: 43  KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLIL 102

Query: 69  RDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEA-INVEKAFQTI 127
           R     +  ++++ NK DL HLR V  +  +  A +  + +IETSA +  +NV+K F  +
Sbjct: 103 RVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL 162

Query: 128 LSEIYR 133
           +  I +
Sbjct: 163 VRVIRQ 168

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 73.2 bits (178), Expect = 2e-17
 Identities = 52/142 (36%), Positives = 78/142 (54%), Gaps = 4/142 (2%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR 69
            +  V+ R +  QIWDTAGQER++++  A+YRGA   +LV+DVT P TF+ +  W  E  
Sbjct: 42  KEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL 101

Query: 70  DHADS----NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQ 125
             A      N   +++GNK DL++ +            +  + + ETSA EAINVE+AFQ
Sbjct: 102 IQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQ 161

Query: 126 TILSEIYRIISKKSLSSGEPAP 147
           TI     +  ++  L +  P P
Sbjct: 162 TIARNALKQETEVELYNEFPEP 183

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 72.7 bits (177), Expect = 3e-17
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 4/124 (3%)

Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
             +  + +K  +WD  GQ   R     YY      + V D T        S+ L  +   
Sbjct: 54  ETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQE 113

Query: 72  AD-SNIVIMMIGNKTDL---KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
            +  +  +++  NK D         V+ E      +    S + +SA++   + +    +
Sbjct: 114 EELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWL 173

Query: 128 LSEI 131
           +  I
Sbjct: 174 IDVI 177

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 72.0 bits (175), Expect = 5e-17
 Identities = 19/126 (15%), Positives = 42/126 (33%), Gaps = 4/126 (3%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-L 68
               VE + I   +WD  GQ++ R +   Y++   G + V D             L   L
Sbjct: 35  NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML 94

Query: 69  RDHADSNIVIMMIGNK---TDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQ 125
            +    + V+++  NK    +  +   +  +               T A     + +   
Sbjct: 95  AEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLD 154

Query: 126 TILSEI 131
            + +++
Sbjct: 155 WLSNQL 160

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.0 bits (175), Expect = 5e-17
 Identities = 42/124 (33%), Positives = 66/124 (53%), Gaps = 1/124 (0%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR 69
              QV    ++  +WDTAGQE + AIT AYYRGA   +LV+  T   +FE +S W +++ 
Sbjct: 42  RQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVV 101

Query: 70  DHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILS 129
                +I   ++ NK DL     +  E+A+  A+R  L F  TS  E +NV + F+ +  
Sbjct: 102 AEVG-DIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE 160

Query: 130 EIYR 133
           +  +
Sbjct: 161 KHLQ 164

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.2 bits (173), Expect = 1e-16
 Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 1/125 (0%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR 69
               V+G   +  I DTAGQE + A+   Y R   G LLV+ +    +F  V +   ++ 
Sbjct: 45  KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQIL 104

Query: 70  DHADSNIVIMMI-GNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTIL 128
              D +   +++ GNK DL+  R V   +A ++     +++ E SA   +NV++AF+ ++
Sbjct: 105 RVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLV 164

Query: 129 SEIYR 133
             + +
Sbjct: 165 RAVRK 169

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.7 bits (164), Expect = 2e-15
 Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 6/134 (4%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR 69
                +      QI DT G  ++ A+           +LVY +T   + E +    +++ 
Sbjct: 41  QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQIC 100

Query: 70  DHAD--SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
           +      +I IM++GNK D    R V + +A++ A     +F+ETSA    NV++ FQ +
Sbjct: 101 EIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 160

Query: 128 LSEIYRIISKKSLS 141
           L     +  ++++S
Sbjct: 161 L----NLEKRRTVS 170

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.2 bits (160), Expect = 1e-14
 Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 13/137 (9%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR 69
            D +V+G+ ++  +WDTAG E Y  +    Y      L+ + +  P + EN+        
Sbjct: 41  ADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV 100

Query: 70  DHADSNIVIMMIGNKTDLKHLRAV------------ATEDAQSYAEREG-LSFIETSALE 116
            H   N+ I+++GNK DL++                  E+ +  A R G   ++E SA  
Sbjct: 101 KHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 160

Query: 117 AINVEKAFQTILSEIYR 133
              V + F+       +
Sbjct: 161 KDGVREVFEMATRAALQ 177

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.9 bits (159), Expect = 1e-14
 Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 6/130 (4%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR 69
                  +    Q+WDTAGQER++++  A+YRGA   +LVYDVT  ++FEN+  W  E  
Sbjct: 43  EVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFL 102

Query: 70  DHADSN----IVIMMIGNKTDLKHLRAVATEDAQSYAERE--GLSFIETSALEAINVEKA 123
            HA+ N       +++GNK D +  + + +E +     +    +    TSA  AINV+ A
Sbjct: 103 VHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTA 162

Query: 124 FQTILSEIYR 133
           F+ I     +
Sbjct: 163 FEEIARSALQ 172

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.8 bits (159), Expect = 2e-14
 Identities = 30/138 (21%), Positives = 62/138 (44%), Gaps = 14/138 (10%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR 69
             F+++ + I+  +WDT+G   Y  +    Y  +   L+ +D+++P T ++V +  K   
Sbjct: 41  ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI 100

Query: 70  DHADSNIVIMMIGNKTDLK------------HLRAVATEDAQSYAEREG-LSFIETSALE 116
                N  ++++G K+DL+                V+ +   + A++ G  ++IE SAL+
Sbjct: 101 QEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ 160

Query: 117 AIN-VEKAFQTILSEIYR 133
           + N V   F         
Sbjct: 161 SENSVRDIFHVATLACVN 178

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 65.4 bits (158), Expect = 2e-14
 Identities = 21/126 (16%), Positives = 46/126 (36%), Gaps = 4/126 (3%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR 69
              ++     +  +WD  GQE  R+  + YY      ++V D T           L ++ 
Sbjct: 50  NVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKML 109

Query: 70  DHADSNIV-IMMIGNKTDLKH---LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQ 125
            H D     +++  NK D+K    +  ++     +  +          AL    + +  +
Sbjct: 110 AHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLE 169

Query: 126 TILSEI 131
            ++S +
Sbjct: 170 WMMSRL 175

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (152), Expect = 1e-13
 Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 2/99 (2%)

Query: 37  SAYYRGALGALLVYDVTKPTTFENVSRWLK-ELRDHADSNIVIMMIGNKTDLKHLRAVAT 95
             + R   G +LVYD+T   +FE V              N+ ++++GNK DL H R V+T
Sbjct: 67  EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVST 126

Query: 96  EDAQSYAEREGLSFIETSALEA-INVEKAFQTILSEIYR 133
           E+ +  A     +F E SA     N+ + F  +  E+ R
Sbjct: 127 EEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 165

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 62.3 bits (150), Expect = 2e-13
 Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 4/119 (3%)

Query: 17  RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SN 75
           +  K  +WD  GQ + R    +Y+      + V D      FE   + L EL +    S 
Sbjct: 58  QGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSC 117

Query: 76  IVIMMIGNKTDLKH---LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
           + +++  NK DL        +A                  SAL    V+     +   +
Sbjct: 118 VPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.1 bits (144), Expect = 1e-12
 Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 1/125 (0%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR 69
               V G+    Q+ DTAGQ+ Y      Y     G +LVY VT   +FE +     +L 
Sbjct: 43  KLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLL 102

Query: 70  DHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTIL 128
           D      I IM++GNK DL   R ++ E+ ++ AE    +F+E+SA E       F+ I+
Sbjct: 103 DMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 162

Query: 129 SEIYR 133
            E  +
Sbjct: 163 LEAEK 167

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (143), Expect = 2e-12
 Identities = 40/131 (30%), Positives = 66/131 (50%), Gaps = 6/131 (4%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR 69
             F      IK  +WDTAGQE++  +   YY  A  A++++DVT   T++NV  W ++L 
Sbjct: 43  LVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV 102

Query: 70  DHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILS 129
              + NI I++ GNK D+K  +  A      +  ++ L + + SA    N EK F  +  
Sbjct: 103 RVCE-NIPIVLCGNKVDIKDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLAR 159

Query: 130 EIYRIISKKSL 140
           +   +I   +L
Sbjct: 160 K---LIGDPNL 167

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (139), Expect = 1e-11
 Identities = 21/101 (20%), Positives = 45/101 (44%), Gaps = 6/101 (5%)

Query: 46  ALLVYDVTKPTTFENVSRW---LKELRDHADSNIVIMMIGNKTD--LKHLRAVATEDAQS 100
            + V+ +    +F+ VSR    L  LR      + + ++G +        R V    A++
Sbjct: 74  VIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARA 133

Query: 101 YA-EREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSL 140
              + +  S+ ET A   +NV++ FQ +  ++  +  ++ L
Sbjct: 134 LCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQL 174

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 3e-11
 Identities = 21/75 (28%), Positives = 39/75 (52%)

Query: 64  WLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKA 123
            ++  R     ++ I+++GNK+DL   R V+ ++ ++ A      FIETSA    NV+  
Sbjct: 94  RVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQAL 153

Query: 124 FQTILSEIYRIISKK 138
           F+ ++ +I      K
Sbjct: 154 FEGVVRQIRLRRDSK 168

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 56.2 bits (134), Expect = 4e-11
 Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 4/126 (3%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR 69
              ++    +  ++WD  GQ R+R++   Y RG    + + D       E     L  L 
Sbjct: 38  NMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLL 97

Query: 70  DHAD-SNIVIMMIGNKTDL---KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQ 125
           D      I ++++GNK DL      + +  +   S  +   +     S  E  N++   Q
Sbjct: 98  DKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQ 157

Query: 126 TILSEI 131
            ++   
Sbjct: 158 WLIQHS 163

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 6e-11
 Identities = 21/76 (27%), Positives = 39/76 (51%)

Query: 58  FENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEA 117
            +     ++  R     +I I+++GNK+DL   R V+  + ++ A      FIETSA   
Sbjct: 94  EKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQ 153

Query: 118 INVEKAFQTILSEIYR 133
            NV++ F+ I+ ++  
Sbjct: 154 HNVKELFEGIVRQVRL 169

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 53.9 bits (128), Expect = 3e-10
 Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 4/126 (3%)

Query: 10  CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKEL- 68
               +E R  K  IWD  GQ+  R+    Y+    G + V D       ++  R L+ L 
Sbjct: 37  NIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLL 96

Query: 69  RDHADSNIVIMMIGNKTDLKHLRAVAT---EDAQSYAEREGLSFIETSALEAINVEKAFQ 125
            +   +   +++  NK DL    +                       SA+   ++     
Sbjct: 97  VEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGID 156

Query: 126 TILSEI 131
            +L +I
Sbjct: 157 WLLDDI 162

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 6e-08
 Identities = 18/120 (15%), Positives = 41/120 (34%), Gaps = 4/120 (3%)

Query: 16  GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH-ADS 74
            + +K Q+WD  G    R     YY      + V D             L  + +     
Sbjct: 46  YKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELR 105

Query: 75  NIVIMMIGNKTDLKHLRAVA---TEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
             ++++  NK D++     +           +       +TSA +   +++A + ++  +
Sbjct: 106 KAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 165

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.8 bits (110), Expect = 2e-07
 Identities = 24/159 (15%), Positives = 45/159 (28%), Gaps = 38/159 (23%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE----- 67
             E + +  ++ D  GQ   R      +      L +   ++        R         
Sbjct: 38  DFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESL 97

Query: 68  ------LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLS--------FIE-- 111
                 + +   SN+ I++  NKTDL   +         + E EG          F+   
Sbjct: 98  NIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVEC 157

Query: 112 -----------------TSALEAINVEKAFQTILSEIYR 133
                            T+A+   N+   F+ +   I  
Sbjct: 158 FRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 196

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.7 bits (107), Expect = 4e-07
 Identities = 17/159 (10%), Positives = 47/159 (29%), Gaps = 37/159 (23%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVT-----------KPTTFENV 61
             + +++  ++ D  GQ   R      +      + +  ++           +    E+ 
Sbjct: 39  PFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESK 98

Query: 62  SRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREG--------------- 106
           + +   +      N  +++  NK DL   + + +     + E +G               
Sbjct: 99  ALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKM 158

Query: 107 -----------LSFIETSALEAINVEKAFQTILSEIYRI 134
                      +    T A +  N+   F  +   I ++
Sbjct: 159 FVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 197

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.3 bits (106), Expect = 6e-07
 Identities = 19/158 (12%), Positives = 41/158 (25%), Gaps = 37/158 (23%)

Query: 13  QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSR--------- 63
               + +  +++D  GQ   R      + G    +    ++                   
Sbjct: 36  HFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESM 95

Query: 64  --WLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREG--------------- 106
             +     +   ++  I++  NK DL   +   +     Y E  G               
Sbjct: 96  KLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQF 155

Query: 107 -----------LSFIETSALEAINVEKAFQTILSEIYR 133
                      +    T A +  NV+  F  +   I +
Sbjct: 156 EDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK 193

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.3 bits (103), Expect = 1e-06
 Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 11/123 (8%)

Query: 16  GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS- 74
              IK   +D  G  + R +   Y+    G + + D   P  F+     L  L + A+  
Sbjct: 41  IGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELK 100

Query: 75  NIVIMMIGNKTDLKH----------LRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
           ++  +++GNK D  +          L  + T  +Q    +  +     S +      +AF
Sbjct: 101 DVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAF 160

Query: 125 QTI 127
           Q +
Sbjct: 161 QWL 163

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 42.0 bits (97), Expect = 8e-06
 Identities = 19/136 (13%), Positives = 38/136 (27%), Gaps = 16/136 (11%)

Query: 12  FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
            ++    +    +D  G  + R +   Y     G + + D             L  L   
Sbjct: 50  EELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTD 109

Query: 72  A-DSNIVIMMIGNKTDLKHLRAVA---------------TEDAQSYAEREGLSFIETSAL 115
              +N+ I+++GNK D     +                    +        L     S L
Sbjct: 110 ETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVL 169

Query: 116 EAINVEKAFQTILSEI 131
           +     + F+ +   I
Sbjct: 170 KRQGYGEGFRWMAQYI 185

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	174
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.96
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.96
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.96
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.95
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.95
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.95
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.95
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.95
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.94
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.94
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.93
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.93
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.93
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.93
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.93
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.92
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.92
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.91
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.9
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.89
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.89
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.88
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.88
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.85
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.76
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.75
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.72
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.71
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.71
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.71
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.67
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.64
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.63
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.61
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.6
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.59
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.57
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.52
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.51
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.49
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.49
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.45
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.44
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.39
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.34
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.32
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.22
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.08
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.07
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.06
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.06
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	98.98
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	98.88
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	98.87
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	98.81
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	98.8
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.67
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	98.54
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.53
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.37
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.27
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.26
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	98.25
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	97.9
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.8
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.35
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	96.91
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	96.24
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	95.95
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	95.7
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	93.91
d1okkd2	207	GTPase domain of the signal recognition particle r	92.97
d1j8yf2	211	GTPase domain of the signal sequence recognition p	92.8
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	92.02
d2qy9a2	211	GTPase domain of the signal recognition particle r	91.0
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	90.77
d1ls1a2	207	GTPase domain of the signal sequence recognition p	90.22
d1vmaa2	213	GTPase domain of the signal recognition particle r	90.22
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	84.29
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	80.36

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.2e-29  Score=178.32  Aligned_cols=129  Identities=26%  Similarity=0.326  Sum_probs=111.6

Q ss_pred             eeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCC
Q 043745            9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDL   87 (174)
Q Consensus         9 ~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl   87 (174)
                      .+.+.+++..+.+.+||++|++.|..++..+++++|++|+|||++++++|+.+..|+..+..... ..+|+++|+||+|+
T Consensus        38 ~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl  117 (168)
T d2gjsa1          38 DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL  117 (168)
T ss_dssp             EEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTC
T ss_pred             cceeeccccccceeeeecccccccceecccchhhhhhhceeccccccccccccccccchhhcccccccceEEEeecccch
Confidence            34667899999999999999999999999999999999999999999999999999999876544 57899999999999


Q ss_pred             CCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q 043745           88 KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISK  137 (174)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~  137 (174)
                      .+.++++..++++++..++++++++||++|.|++++|++|++.+..+..+
T Consensus       118 ~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~~i~~~~~~  167 (168)
T d2gjsa1         118 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDS  167 (168)
T ss_dssp             GGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHHHHHHHhhC
Confidence            98888999999999999999999999999999999999999998877654

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=6.2e-28  Score=169.68  Aligned_cols=130  Identities=31%  Similarity=0.521  Sum_probs=119.1

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piil   80 (174)
                      ||++  +.+.+.+++..+.+++||++|++.+..++..+++++|++++|||+++++||+.+..|+..+.+.. ..++|+++
T Consensus        35 ~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~il  114 (169)
T d1x1ra1          35 PTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMIL  114 (169)
T ss_dssp             TTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEE
T ss_pred             cceeeccccccccccccccccccccccccccccchhhhhhhccEEEEecccccchhhhccchhhHHHHhhccccCccEEE
Confidence            6666  55667789999999999999999999999999999999999999999999999999999987654 35799999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCC-CHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAI-NVEKAFQTILSEIYR  133 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~v~~~l~~~i~~  133 (174)
                      ++||+|+.+.+.++.+++++++++++++|+++||+++. ||+++|+.+++.+.+
T Consensus       115 vgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~l~~~i~~  168 (169)
T d1x1ra1         115 VANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ  168 (169)
T ss_dssp             EEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             EecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHHHHHHHHh
Confidence            99999999888899999999999999999999999886 999999999998875

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.96  E-value=3.4e-28  Score=170.91  Aligned_cols=130  Identities=31%  Similarity=0.535  Sum_probs=116.1

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piil   80 (174)
                      ||+|  ..+.+.+++..+.+.+||++|++++..++..+++++|++++|||+++.++|+.+..|+..+.+... .++|+++
T Consensus        35 ~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piii  114 (168)
T d1u8za_          35 PTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL  114 (168)
T ss_dssp             TTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEE
T ss_pred             CccccccccccccccccccccccccccccchhhhhhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEE
Confidence            6777  345677899999999999999999999999999999999999999999999999999999876543 5799999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      |+||.|+.+.+++..++++.+++.++++++++||++|.|++++|++|++.+..
T Consensus       115 vgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~~  167 (168)
T d1u8za_         115 VGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             EeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHHHHHHHC
Confidence            99999998888899999999999999999999999999999999999988754

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.9e-28  Score=170.25  Aligned_cols=131  Identities=72%  Similarity=1.149  Sum_probs=120.8

Q ss_pred             eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      +.+.+++..+.+.+||++|+++|..++..+++++|++|+|||+++++||..+.+|+..+..+...++|++||+||+|+.+
T Consensus        44 ~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~  123 (175)
T d2f9la1          44 RSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH  123 (175)
T ss_dssp             EEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred             EEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccc
Confidence            36678999999999999999999999999999999999999999999999999999999888777899999999999988


Q ss_pred             ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q 043745           90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSL  140 (174)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~~  140 (174)
                      .+....+....+....+.+++++||++|.|++++|+++++.+.+.+.+++.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l~~~i~~~~~~~qi  174 (175)
T d2f9la1         124 LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI  174 (175)
T ss_dssp             GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHTSCC
T ss_pred             cccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHHHHHHHHHhhhccC
Confidence            777888888899999999999999999999999999999999988776654

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.4e-28  Score=169.00  Aligned_cols=122  Identities=50%  Similarity=0.840  Sum_probs=114.6

Q ss_pred             eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      +.+.+++..+.+.+||++|++.+..++..+++++|++++|||+++.++|+.+..|+..+.+......|+++++||.|+..
T Consensus        44 ~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~  123 (166)
T d1z0fa1          44 RIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA  123 (166)
T ss_dssp             EEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred             EEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchh
Confidence            36678999999999999999999999999999999999999999999999999999998877777899999999999988


Q ss_pred             ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      .+.+..++++.+++..++++++|||++|.|++++|+++++.+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i~~~i  165 (166)
T d1z0fa1         124 QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI  165 (166)
T ss_dssp             GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             hcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            888889999999999999999999999999999999999876

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.2e-28  Score=170.01  Aligned_cols=131  Identities=31%  Similarity=0.436  Sum_probs=119.7

Q ss_pred             CCCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEE
Q 043745            3 QPRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIM   79 (174)
Q Consensus         3 ~pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~pii   79 (174)
                      .||++  ..+.+.+++..+.+.+||++|.+.|..++..++.++|++|+|||++++++|+.+..|+..+.+... .++|++
T Consensus        34 ~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii  113 (167)
T d1xtqa1          34 DPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIM  113 (167)
T ss_dssp             CSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEE
T ss_pred             CcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhccccccccee
Confidence            36777  456778999999999999999999999999999999999999999999999999999998876543 579999


Q ss_pred             EEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           80 MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        80 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      ||+||+|+...++++.++++.++++++++|+++||++|.|++++|+.+++.+.+
T Consensus       114 lvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~li~~~~K  167 (167)
T d1xtqa1         114 LVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEK  167 (167)
T ss_dssp             EEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             eeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHHhcC
Confidence            999999998888899999999999999999999999999999999999988753

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.5e-27  Score=168.19  Aligned_cols=127  Identities=53%  Similarity=0.899  Sum_probs=118.0

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      ....++..+.+.+||++|++.|..++..+++++|++|+|||++++++|+.+..|+..+......++|++||+||+|+...
T Consensus        44 ~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  123 (173)
T d2a5ja1          44 MVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR  123 (173)
T ss_dssp             EEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred             eeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhh
Confidence            44568888999999999999999999999999999999999999999999999999988776678999999999999888


Q ss_pred             cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q 043745           91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISK  137 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~  137 (174)
                      +.+..+++..+++..+++++++||++|.|++++|.++++.++++..+
T Consensus       124 ~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~~~i~~~~~~  170 (173)
T d2a5ja1         124 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ  170 (173)
T ss_dssp             CCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            88899999999999999999999999999999999999999887654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=5.8e-28  Score=168.90  Aligned_cols=128  Identities=34%  Similarity=0.571  Sum_probs=118.1

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||+|   ..+.+..++..+.+.+||++|++++..++..+++++|++++|||++++++|+.+..|+..+....+ ++|++|
T Consensus        33 ~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~iil  111 (164)
T d1z2aa1          33 KTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTAL  111 (164)
T ss_dssp             CCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHC-SCCEEE
T ss_pred             cccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEEEeccchhhhhhcccccccccccCC-CceEEE
Confidence            5666   445667899999999999999999999999999999999999999999999999999999887665 799999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      |+||+|+.+.+++..++++.++++++++++++||++|.|++++|++|++.++
T Consensus       112 VgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~l  163 (164)
T d1z2aa1         112 VQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL  163 (164)
T ss_dssp             EEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred             eeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHHHHh
Confidence            9999999888889999999999999999999999999999999999999876

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=1.4e-27  Score=167.81  Aligned_cols=126  Identities=40%  Similarity=0.734  Sum_probs=115.7

Q ss_pred             ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745            8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL   87 (174)
Q Consensus         8 ~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl   87 (174)
                      ..+.+..++..+.++||||+|+++|..++..+++++|++|+|||+++.+++..+..|+..+........|+++++||.|+
T Consensus        43 ~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~  122 (169)
T d3raba_          43 KVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM  122 (169)
T ss_dssp             EEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTC
T ss_pred             eeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeeccc
Confidence            33456678888999999999999999999999999999999999999999999999988887766668999999999999


Q ss_pred             CCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           88 KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      .+.+.+..++++.++..++++++++||++|.|++++|+++++.+++
T Consensus       123 ~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~e  168 (169)
T d3raba_         123 EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE  168 (169)
T ss_dssp             GGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHT
T ss_pred             ccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHHHhh
Confidence            9888899999999999999999999999999999999999998764

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.4e-27  Score=168.44  Aligned_cols=126  Identities=44%  Similarity=0.825  Sum_probs=103.6

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      ++.+++..+.+.+||++|++.|..++..+++++|++|+|||+++++++..+..|+..+......+.|+++|+||.|+...
T Consensus        47 ~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~  126 (173)
T d2fu5c1          47 TIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK  126 (173)
T ss_dssp             EEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSC
T ss_pred             EEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhh
Confidence            56778889999999999999999999999999999999999999999999999999987777678999999999999987


Q ss_pred             cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q 043745           91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIIS  136 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~  136 (174)
                      +....+++..++...++++++|||++|.|++++|++|++.+..++.
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l~~~i~~k~~  172 (173)
T d2fu5c1         127 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD  172 (173)
T ss_dssp             CCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHHHHhcC
Confidence            8888888999999999999999999999999999999999987764

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.1e-27  Score=167.07  Aligned_cols=127  Identities=37%  Similarity=0.686  Sum_probs=117.2

Q ss_pred             ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745            8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL   87 (174)
Q Consensus         8 ~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl   87 (174)
                      ..+.+.+++..+++.+|||+|++.|..++..++++++++++|||+++.+++..+..|+..+.......+|++||+||+|+
T Consensus        43 ~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~  122 (171)
T d2ew1a1          43 MIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDL  122 (171)
T ss_dssp             EEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred             EEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeeccc
Confidence            34567789999999999999999999999999999999999999999999999999999887766667999999999999


Q ss_pred             CCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           88 KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      .+.+++..++++.+++..++++++|||++|.|++++|.+++++++..
T Consensus       123 ~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l~~~l~~~  169 (171)
T d2ew1a1         123 AERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE  169 (171)
T ss_dssp             GGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHHHHHHHHh
Confidence            88788999999999999999999999999999999999999888664

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.9e-27  Score=167.77  Aligned_cols=128  Identities=26%  Similarity=0.485  Sum_probs=117.1

Q ss_pred             ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCC
Q 043745            8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMIGNKTD   86 (174)
Q Consensus         8 ~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~D   86 (174)
                      ..+.+.+++..+.+.+||++|+++|...+..+++++|++|+|||+++.++|+.+..|+..+.... ..++|++||+||.|
T Consensus        43 ~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~D  122 (173)
T d2fn4a1          43 YTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD  122 (173)
T ss_dssp             EEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGG
T ss_pred             eeeEeccCCeeeeeeccccccccccccccchhhccceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeec
Confidence            34567889999999999999999999999999999999999999999999999999999876543 35799999999999


Q ss_pred             CCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745           87 LKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus        87 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                      +...+.+..++++.++..+++++++|||++|.|++++|+.+++.+.+..
T Consensus       123 l~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~k~~  171 (173)
T d2fn4a1         123 LESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ  171 (173)
T ss_dssp             GGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             hhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHHHHHHHHHHHHh
Confidence            9887888899999999999999999999999999999999999987643

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=8.3e-28  Score=168.57  Aligned_cols=130  Identities=38%  Similarity=0.684  Sum_probs=111.0

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||.+   ..+.+..++..+.+.+||++|++++..++..+++++|++|+|||+++++||+.+..|+..+........|++|
T Consensus        34 ~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~il  113 (167)
T d1z08a1          34 TTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCI  113 (167)
T ss_dssp             CCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEE
T ss_pred             cccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEEEeCCchhHHHhhhhhhhhcccccccccceee
Confidence            4555   3346677888999999999999999999999999999999999999999999999999888766556789999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      ++||+|+...++++.++++.+++++++++++|||++|.|++++|++|++.+++
T Consensus       114 vgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~~~i~~  166 (167)
T d1z08a1         114 VGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE  166 (167)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred             eccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHHHHHhh
Confidence            99999999888999999999999999999999999999999999999998763

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=2.4e-27  Score=166.21  Aligned_cols=121  Identities=44%  Similarity=0.744  Sum_probs=113.2

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      ....++....+.+||++|++.+..++..+++++|++|+|||++++++|+.+..|+..+......+.|+++|+||+|+.+.
T Consensus        45 ~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~  124 (167)
T d1z0ja1          45 TVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV  124 (167)
T ss_dssp             EEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGG
T ss_pred             cccccccccceeeeecCCchhhhHHHHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccc
Confidence            45568888899999999999999999999999999999999999999999999998887777778999999999999888


Q ss_pred             cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      +.+..+++++++..++++|+++||++|.|++++|.++++.+
T Consensus       125 ~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l~~~i  165 (167)
T d1z0ja1         125 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI  165 (167)
T ss_dssp             CCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             cchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHhC
Confidence            88999999999999999999999999999999999998875

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=7.9e-28  Score=169.15  Aligned_cols=128  Identities=26%  Similarity=0.339  Sum_probs=115.0

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCeEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD--SNIVIM   79 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~pii   79 (174)
                      ||+|  ..+...+++..+.+.+||++|++.|...+..+++++|++++|||++++++|..+..|+..+.+...  .++|++
T Consensus        33 ~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~pii  112 (171)
T d2erxa1          33 PTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIM  112 (171)
T ss_dssp             CCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEE
T ss_pred             cceeeccccceeeccccceeccccccccccccccccccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEE
Confidence            6666  344567899999999999999999999999999999999999999999999999999988765433  578999


Q ss_pred             EEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           80 MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        80 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      ||+||+|+...+++..++++.+++.++++++++||++|.|++++|+.|++.+
T Consensus       113 lVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~~  164 (171)
T d2erxa1         113 LVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE  164 (171)
T ss_dssp             EEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred             EEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence            9999999988888999999999999999999999999999999999988754

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.8e-27  Score=167.32  Aligned_cols=129  Identities=22%  Similarity=0.372  Sum_probs=110.1

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMI   81 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv   81 (174)
                      ||+|  ..+...+++..+.+.|||++|+++|..++..+++++|++++|||+++++||+++..|+.........+.|+++|
T Consensus        34 ~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lv  113 (191)
T d2ngra_          34 PTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLV  113 (191)
T ss_dssp             CCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEE
T ss_pred             CceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEE
Confidence            6777  44456679999999999999999999999999999999999999999999999976544443333457999999


Q ss_pred             EeCCCCCC------------ccCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           82 GNKTDLKH------------LRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        82 ~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      +||+|+.+            .+.+..++++.++.+++ ++|+++||++|.|++++|+.+++.++
T Consensus       114 gnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~V~e~f~~l~~~~~  177 (191)
T d2ngra_         114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL  177 (191)
T ss_dssp             EECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             eccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHh
Confidence            99999853            24688899999999875 79999999999999999999887663

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4e-27  Score=165.47  Aligned_cols=125  Identities=44%  Similarity=0.767  Sum_probs=107.7

Q ss_pred             ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745            8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL   87 (174)
Q Consensus         8 ~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl   87 (174)
                      ....+.+++..+.++||||+|++.+..++..+++++|++++|||+++++++..+..|+..+........|+++++||.|+
T Consensus        45 ~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~  124 (170)
T d2g6ba1          45 RNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDS  124 (170)
T ss_dssp             EEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCST
T ss_pred             EEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeech
Confidence            44467789999999999999999999999999999999999999999999999999988877666667899999999999


Q ss_pred             CCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           88 KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      .+.+.+..+++..++..++++++++||++|.|++++|++|++.+.
T Consensus       125 ~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~l~~~i~  169 (170)
T d2g6ba1         125 AHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK  169 (170)
T ss_dssp             TSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHcC
Confidence            988899999999999999999999999999999999999998875

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=7.9e-27  Score=163.78  Aligned_cols=132  Identities=30%  Similarity=0.425  Sum_probs=115.1

Q ss_pred             CCCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEE
Q 043745            3 QPRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIM   79 (174)
Q Consensus         3 ~pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~pii   79 (174)
                      .||+|  +.+.+..++..+.+.+||++|++.+. .+..+++++|++++|||++++++|..+..|+..+..... .+.|++
T Consensus        32 ~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii  110 (168)
T d2atva1          32 DPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLI  110 (168)
T ss_dssp             CTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEE
T ss_pred             CCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeecccCCccchhhhhhhcccccccccccCccee
Confidence            37777  45566789999999999999998875 567789999999999999999999999888766544333 579999


Q ss_pred             EEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCC-CHHHHHHHHHHHHHHHH
Q 043745           80 MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAI-NVEKAFQTILSEIYRII  135 (174)
Q Consensus        80 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~v~~~l~~~i~~~~  135 (174)
                      +|+||+|+.+.+.++.++++.++.+++++|+++||++|. ||+++|..|++.+.++.
T Consensus       111 lvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l~~~i~~~r  167 (168)
T d2atva1         111 LVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRR  167 (168)
T ss_dssp             EEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             eeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHHHHHHHHhc
Confidence            999999998888899999999999999999999999998 59999999999887753

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=9.1e-27  Score=162.62  Aligned_cols=122  Identities=38%  Similarity=0.721  Sum_probs=113.6

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      ...+++..+.+.+||++|++.+...+..++.++|++++|||++++++|+.+..|+..+......++|+++|+||.|+.+.
T Consensus        41 ~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~  120 (164)
T d1yzqa1          41 TMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK  120 (164)
T ss_dssp             EEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGG
T ss_pred             eeccCCCceeeeecccCCcchhccchHHHhhccceEEEeeccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhh
Confidence            55668889999999999999999999999999999999999999999999999999987776668999999999999887


Q ss_pred             cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      +.+..+++..+++++++++++|||++|.|++++|++|++++.
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~l~  162 (164)
T d1yzqa1         121 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP  162 (164)
T ss_dssp             CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHSC
T ss_pred             hhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHhhC
Confidence            888999999999999999999999999999999999998753

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=7e-27  Score=165.25  Aligned_cols=129  Identities=26%  Similarity=0.494  Sum_probs=111.8

Q ss_pred             CCCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHH-HHhhcCCCCeEE
Q 043745            3 QPRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDHADSNIVIM   79 (174)
Q Consensus         3 ~pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~-i~~~~~~~~pii   79 (174)
                      .||+|  ..+.+.+++..+.+.+||++|++.|..++..+++++|++|+|||+++++||+++..|+.. +... .+++|++
T Consensus        32 ~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~~~pii  110 (177)
T d1kmqa_          32 VPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPII  110 (177)
T ss_dssp             CCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTSCEE
T ss_pred             CCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHh-CCCCceE
Confidence            36777  445667899999999999999999999999999999999999999999999998765444 4444 4589999


Q ss_pred             EEEeCCCCCCc------------cCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           80 MIGNKTDLKHL------------RAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        80 lv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      ||+||+|+.+.            +.+..++++.++++++ ++|++|||++|.|++++|+.+++.++
T Consensus       111 lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         111 LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL  176 (177)
T ss_dssp             EEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence            99999999542            4578899999999998 58999999999999999999999876

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2e-27  Score=169.24  Aligned_cols=120  Identities=42%  Similarity=0.731  Sum_probs=110.1

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCCCccCCCHH
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLKHLRAVATE   96 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~   96 (174)
                      .+.+.+||++|+++|..++..+++++|++|+|||+++.++|+.+..|+..+..... ...|++||+||.|+...+++..+
T Consensus        63 ~~~~~i~dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~  142 (186)
T d2f7sa1          63 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNER  142 (186)
T ss_dssp             EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHH
T ss_pred             eEEeccccCCcchhhHHHHHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHH
Confidence            46799999999999999999999999999999999999999999999987765433 56899999999999988899999


Q ss_pred             HHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q 043745           97 DAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISK  137 (174)
Q Consensus        97 ~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~  137 (174)
                      ++++++++++++++++||++|.|++++|+++++.+.+++.+
T Consensus       143 e~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~~~i~~k~~~  183 (186)
T d2f7sa1         143 QARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQ  183 (186)
T ss_dssp             HHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999887643

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.1e-26  Score=163.45  Aligned_cols=131  Identities=31%  Similarity=0.550  Sum_probs=114.9

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piil   80 (174)
                      ||.|  ..+.+.+++..+.+.+||++|++.+...+..+++.+|++++|||+++++||+.+..|+..+..... ...|+|+
T Consensus        36 ~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~il  115 (171)
T d2erya1          36 PTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMIL  115 (171)
T ss_dssp             TTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEE
T ss_pred             cccccceeeeeeecccccccccccccccccccccccccccccceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEE
Confidence            6666  555777899999999999999999999999999999999999999999999999999988765433 5789999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      |+||+|+...+.+..++++.++++++++|++|||++|.|++++|+.|++.+.+.
T Consensus       116 vgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~~~i~k~  169 (171)
T d2erya1         116 IGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKF  169 (171)
T ss_dssp             EEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence            999999988888999999999999999999999999999999999999988653

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.2e-26  Score=165.21  Aligned_cols=128  Identities=27%  Similarity=0.507  Sum_probs=111.3

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHH-HHHHHHhhcCCCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSR-WLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piil   80 (174)
                      ||++  ..+.+.+++..+.+.+||++|++.|..++..+++++|++++|||+++++||+++.. |+..+... ..+.|+++
T Consensus        40 ~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~~~~~il  118 (185)
T d2atxa1          40 PTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPFLL  118 (185)
T ss_dssp             CSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEE
T ss_pred             CceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhc-CCCCCeeE
Confidence            6776  44556778899999999999999999999999999999999999999999998755 55555544 45899999


Q ss_pred             EEeCCCCCC------------ccCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKH------------LRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        81 v~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      |+||+|+.+            .+.++.+++++++++++ +.|++|||++|.|++++|+.+++.++
T Consensus       119 vgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         119 IGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             EEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             eeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEecCCCCcCHHHHHHHHHHHHc
Confidence            999999864            35788999999999998 78999999999999999999998874

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.9e-26  Score=161.56  Aligned_cols=129  Identities=47%  Similarity=0.725  Sum_probs=119.1

Q ss_pred             eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      +.+..++..+.+.+||++|++++..++..+++++|++|+|||.++.+++..+..|+..+......++|+++++||+|+..
T Consensus        45 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~  124 (174)
T d2bmea1          45 KIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA  124 (174)
T ss_dssp             EEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred             EEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccc
Confidence            35567889999999999999999999999999999999999999999999999999998777767899999999999988


Q ss_pred             ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q 043745           90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK  138 (174)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~  138 (174)
                      .+++.......++...+++++++||++|.|++++|+++++.+++++...
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l~~~i~~~~~~~  173 (174)
T d2bmea1         125 DREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESG  173 (174)
T ss_dssp             GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHSC
T ss_pred             hhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHHHHHHHHhcC
Confidence            7888899999999999999999999999999999999999999876543

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2.2e-26  Score=165.05  Aligned_cols=135  Identities=44%  Similarity=0.794  Sum_probs=122.0

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||.|   ..+.+.+++..+.+.||||+|+++|..+|..+++++|++|+|||+++++++..+..|+..+.+.....+|+++
T Consensus        37 ~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iil  116 (194)
T d2bcgy1          37 STIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLL  116 (194)
T ss_dssp             CSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             CccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEE
Confidence            6666   3346778999999999999999999999999999999999999999999999999988888776667899999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK  138 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~  138 (174)
                      |+||.|+.+...+..++...++...++.++++||++|.|++++|+++++.+.+.....
T Consensus       117 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~l~~~i~~~~~~~  174 (194)
T d2bcgy1         117 VGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQ  174 (194)
T ss_dssp             EEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHCCHH
T ss_pred             EEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHHHHHHHHHHHhhhc
Confidence            9999999988889999999999999999999999999999999999999988765443

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.6e-26  Score=161.86  Aligned_cols=129  Identities=25%  Similarity=0.474  Sum_probs=116.1

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piil   80 (174)
                      ||+|  ..+.+.+++..+.+.+||++|++.+...+..+++++|++++|||++++++|..+..|+..+..... .++|++|
T Consensus        34 ~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piil  113 (167)
T d1kaoa_          34 PTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVIL  113 (167)
T ss_dssp             TTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred             CceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEE
Confidence            4444  344667899999999999999999999999999999999999999999999999999988766443 5799999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      |+||+|+.+.+.+..++++.++..++++++++||++|.|++++|+++++++.
T Consensus       114 vgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i~~~i~  165 (167)
T d1kaoa_         114 VGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             EEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHHHHHHc
Confidence            9999999888889999999999999999999999999999999999988753

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.3e-26  Score=159.67  Aligned_cols=123  Identities=45%  Similarity=0.753  Sum_probs=114.1

Q ss_pred             eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      ..+..++..+.+.+||++|++.|..++..+++++|++++|||.++.++|..+..|+..+.+...+++|++||+||+|+..
T Consensus        46 ~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~  125 (170)
T d1r2qa_          46 QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN  125 (170)
T ss_dssp             EEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred             ceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccc
Confidence            35567888999999999999999999999999999999999999999999999999988776667899999999999998


Q ss_pred             ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      .+.++.+++++++..++++++++||++|.|++++|++|++.+.
T Consensus       126 ~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~~~i~  168 (170)
T d1r2qa_         126 KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred             cccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            8899999999999999999999999999999999999987653

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.6e-26  Score=160.13  Aligned_cols=129  Identities=28%  Similarity=0.480  Sum_probs=115.1

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piil   80 (174)
                      ||+|  ..+.+.+++..+.+.+||++|++.+...+..+++++|++|+|||+++++||+.+..|+..+.+.. ..++|++|
T Consensus        34 ~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~il  113 (167)
T d1c1ya_          34 PTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMIL  113 (167)
T ss_dssp             CCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEE
T ss_pred             CccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEE
Confidence            5555  44456778999999999999999999999999999999999999999999999999999886643 35799999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHh-CCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAERE-GLSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      |+||+|+...+.+..+++..++++. +++++++||++|.|++++|+++++.+.
T Consensus       114 vgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~l~~~i~  166 (167)
T d1c1ya_         114 VGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred             EEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHHHHHHhc
Confidence            9999999988888899999999885 689999999999999999999998764

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.9e-26  Score=160.32  Aligned_cols=125  Identities=26%  Similarity=0.380  Sum_probs=110.5

Q ss_pred             ceeEEEECCeEEEEEEEeCC---CchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEe
Q 043745            8 KLCDFQVEGRTIKAQIWDTA---GQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMIGN   83 (174)
Q Consensus         8 ~~~~~~~~~~~~~l~l~D~~---G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~n   83 (174)
                      ..+.+.+++..+.+.+||++   |+++|  ++..+++++|++|+|||++++++|+.+..|+..+.... ..++|+++|+|
T Consensus        42 ~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgn  119 (172)
T d2g3ya1          42 YERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGN  119 (172)
T ss_dssp             EEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEE
T ss_pred             ceeeeccCCceeeeeeeccccccccccc--cccccccccceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEec
Confidence            44577889999999999975   45554  67778999999999999999999999999998886543 35799999999


Q ss_pred             CCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           84 KTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        84 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      |+|+.+.++++.+++++++..++++++++||++|.|++++|+.|++.+..+
T Consensus       120 K~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~f~~l~~~i~~r  170 (172)
T d2g3ya1         120 KSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR  170 (172)
T ss_dssp             CTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             cccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHHHHHHHHHHHHc
Confidence            999998888999999999999999999999999999999999999998765

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9.8e-26  Score=159.34  Aligned_cols=125  Identities=41%  Similarity=0.732  Sum_probs=114.2

Q ss_pred             eeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCC
Q 043745            9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDL   87 (174)
Q Consensus         9 ~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl   87 (174)
                      .+.+.+++..+.+.||||+|++++..++..+++++|++++|||++++.+++.+..|+..+..... ...|+++++||.|.
T Consensus        46 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~  125 (177)
T d1x3sa1          46 VKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK  125 (177)
T ss_dssp             EEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTS
T ss_pred             eEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeecccc
Confidence            33567899999999999999999999999999999999999999999999999999999876554 56899999999998


Q ss_pred             CCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           88 KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      .. +++..++++.++++++++++++||++|.|++++|+++++.+++.
T Consensus       126 ~~-~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~l~~~l~~~  171 (177)
T d1x3sa1         126 EN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT  171 (177)
T ss_dssp             SS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             cc-ccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHHHccC
Confidence            65 67889999999999999999999999999999999999998865

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9.2e-27  Score=163.80  Aligned_cols=127  Identities=31%  Similarity=0.564  Sum_probs=111.1

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||+|   ..+.+.+++..+.+.+||++|++.+..++..+++++|++++|||+++++||+.+..|+..+..... ++|+++
T Consensus        34 ~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~-~~piil  112 (170)
T d1i2ma_          34 ATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVL  112 (170)
T ss_dssp             EETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHC-SCCEEE
T ss_pred             cceeccccccccccccccccccccccccccccceecchhcccccchhhccccccccccchhHHHHHHHhhccC-CCceee
Confidence            5555   344566788899999999999999999999999999999999999999999999999999877664 799999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      |+||+|+...+..  ++...++...+++++++||++|.|++++|++|++.++.
T Consensus       113 vgnK~Dl~~~~~~--~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~  163 (170)
T d1i2ma_         113 CGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG  163 (170)
T ss_dssp             EEECCCCSCSCCT--TTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHHHHHT
T ss_pred             ecchhhhhhhhhh--hHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHcc
Confidence            9999999875443  34567888889999999999999999999999998863

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.1e-25  Score=155.14  Aligned_cols=129  Identities=33%  Similarity=0.564  Sum_probs=115.3

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piil   80 (174)
                      ||+|  ....+..++..+.+.+||++|++.+...+..+++.++++++|||++++.+|+.+..|+..+..... .++|+++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil  113 (166)
T d1ctqa_          34 PTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL  113 (166)
T ss_dssp             CCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEE
T ss_pred             CccceeeccceeeeceeeeeeeeeccCccccccchhhhhhcccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEE
Confidence            4555  333556789999999999999999999999999999999999999999999999999999876554 5799999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      |+||.|+.. +.+..++++.+++.++++++++||++|.|++++|.++++.+.+
T Consensus       114 v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i~~~i~~  165 (166)
T d1ctqa_         114 VGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             EEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             Eeccccccc-ccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHHHHHHh
Confidence            999999975 6778899999999999999999999999999999999988753

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=3.6e-25  Score=155.31  Aligned_cols=128  Identities=44%  Similarity=0.738  Sum_probs=115.8

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||.|   ..+.+.+++..+.+.+||++|++.+..++..++.++|++++|||++++++|+.+..|+..+........|+++
T Consensus        34 ~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  113 (170)
T d1ek0a_          34 PTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIAL  113 (170)
T ss_dssp             CCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             ccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEEEeCCcccchhhhhhhhhhhccccccccceee
Confidence            6777   5567788999999999999999999999999999999999999999999999999998887766666899999


Q ss_pred             EEeCCCCCC---ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           81 IGNKTDLKH---LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        81 v~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      ++||.|+.+   .+.+..++++.+++.++++|+++||++|.|++++|+.|++++
T Consensus       114 v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~~i~~~i  167 (170)
T d1ek0a_         114 VGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             EEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred             eecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHHh
Confidence            999999854   367889999999999999999999999999999999987654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=8.4e-26  Score=159.14  Aligned_cols=121  Identities=38%  Similarity=0.640  Sum_probs=97.4

Q ss_pred             CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC----CCCeEEEEEeCCCCCCc
Q 043745           15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD----SNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~   90 (174)
                      +...+.+.+||++|++++...+..+++.+|++++|||++++.+|..+..|+..+.....    .++|+++++||+|+.+.
T Consensus        48 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~  127 (175)
T d1ky3a_          48 GDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES  127 (175)
T ss_dssp             SSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG
T ss_pred             CcccccceeeccCCchhhhhHHHHHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhh
Confidence            44456789999999999999999999999999999999999999999999998865432    47899999999999865


Q ss_pred             -cCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745           91 -RAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus        91 -~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                       +.+..+++++++..++ ++++++||++|.|++++|+++++.++++.
T Consensus       128 ~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~f~~l~~~~l~~~  174 (175)
T d1ky3a_         128 KKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN  174 (175)
T ss_dssp             GCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             hcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhcc
Confidence             4478889999999986 78999999999999999999999887753

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.6e-25  Score=154.56  Aligned_cols=122  Identities=39%  Similarity=0.734  Sum_probs=109.9

Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC----CCCeEEEEEeCCC
Q 043745           11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD----SNIVIMMIGNKTD   86 (174)
Q Consensus        11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~D   86 (174)
                      .+.+++..+.+.+||++|+..+...+..++..+|+++++||.+++.+|+.+..|+..+.....    .++|++||+||.|
T Consensus        47 ~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~D  126 (174)
T d1wmsa_          47 DLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID  126 (174)
T ss_dssp             EEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTT
T ss_pred             eeeecCceeeEeeecccCcceehhhhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccc
Confidence            556788899999999999999999999999999999999999999999999999988765432    4699999999999


Q ss_pred             CCCccCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           87 LKHLRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        87 l~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      +.+ +.+..+++++++++.+ ++|+++||+++.|++++|+++++.++.
T Consensus       127 l~~-~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~il~  173 (174)
T d1wmsa_         127 ISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA  173 (174)
T ss_dssp             CSS-CSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             hhh-ccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHHHHHHHHHHHhc
Confidence            975 6788999999998875 899999999999999999999998863

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=2.1e-25  Score=158.10  Aligned_cols=130  Identities=23%  Similarity=0.439  Sum_probs=111.7

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMI   81 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv   81 (174)
                      ||++  ..+.+.+++..+.+++||++|++.+...+..+++++|++|+|||+++++||+.+..|+.........++|+++|
T Consensus        33 ~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilV  112 (179)
T d1m7ba_          33 PTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLV  112 (179)
T ss_dssp             CCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEE
T ss_pred             CceeecccccccccceEEeeccccccccccccccccchhhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEE
Confidence            6666  55566789999999999999999999999999999999999999999999999976555543333358999999


Q ss_pred             EeCCCCCC------------ccCCCHHHHHHHHHHhC-CcEEEEeccCCC-CHHHHHHHHHHHHHH
Q 043745           82 GNKTDLKH------------LRAVATEDAQSYAEREG-LSFIETSALEAI-NVEKAFQTILSEIYR  133 (174)
Q Consensus        82 ~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~-~i~~v~~~l~~~i~~  133 (174)
                      |||+|+..            .+.++.+++..++++++ ..|++|||++|. +++++|+.+++.+++
T Consensus       113 gnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         113 GCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN  178 (179)
T ss_dssp             EECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             EecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCCCCcCHHHHHHHHHHHHhc
Confidence            99999853            35688999999999988 589999999998 499999999998874

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=6.6e-25  Score=153.39  Aligned_cols=130  Identities=42%  Similarity=0.798  Sum_probs=114.5

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil   80 (174)
                      ||+|   ..+.+.+++..+.+.+|||+|++.|..++..+++++|++++|||++++++++.+..|+..+........|+++
T Consensus        33 ~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~  112 (166)
T d1g16a_          33 TTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLL  112 (166)
T ss_dssp             ----CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred             CccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccccCcceeee
Confidence            4555   3446678899999999999999999999999999999999999999999999999998888777777889999


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      +++|.|+.. +....+++++++...++++++|||+++.|++++|++|++.+.++
T Consensus       113 ~~~k~d~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~~i~~k  165 (166)
T d1g16a_         113 VGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK  165 (166)
T ss_dssp             EEECTTCTT-CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             ecchhhhhh-hhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHHHHHhc
Confidence            999999875 56778899999999999999999999999999999999988764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=7.9e-25  Score=152.70  Aligned_cols=120  Identities=36%  Similarity=0.648  Sum_probs=106.5

Q ss_pred             eeEEEECCeEEEEEEEeCCCchhhhh-hhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCC
Q 043745            9 LCDFQVEGRTIKAQIWDTAGQERYRA-ITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTD   86 (174)
Q Consensus         9 ~~~~~~~~~~~~l~l~D~~G~~~~~~-~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~D   86 (174)
                      .+...+.+....+.+||++|...+.. .++.+++++|++|+|||++++++|+.+..|+..+.+... .++|++||+||+|
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~D  120 (165)
T d1z06a1          41 ERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCD  120 (165)
T ss_dssp             EEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTT
T ss_pred             eeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEecccc
Confidence            34667889999999999999887764 578899999999999999999999999999999876543 5799999999999


Q ss_pred             CCCccCCCHHHHHHHHHHhCCcEEEEeccCC---CCHHHHHHHHH
Q 043745           87 LKHLRAVATEDAQSYAEREGLSFIETSALEA---INVEKAFQTIL  128 (174)
Q Consensus        87 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~i~~v~~~l~  128 (174)
                      +.+.++++.++++.++++++++++++||+++   .||+++|++|+
T Consensus       121 l~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~F~~lA  165 (165)
T d1z06a1         121 LRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA  165 (165)
T ss_dssp             CGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC
T ss_pred             chhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHHHHHhC
Confidence            9888889999999999999999999999874   59999998873

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-24  Score=154.62  Aligned_cols=128  Identities=27%  Similarity=0.555  Sum_probs=110.0

Q ss_pred             CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHH-HHHHHHhhcCCCCeEEE
Q 043745            4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSR-WLKELRDHADSNIVIMM   80 (174)
Q Consensus         4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piil   80 (174)
                      ||+|  ..+.+..++..+.+.+||++|++.|..++..+++++|++++|||++++++|+++.. |+..+..+. .++|++|
T Consensus        36 ~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~-~~~piil  114 (183)
T d1mh1a_          36 PTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIIL  114 (183)
T ss_dssp             CCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEE
T ss_pred             cceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHhC-CCCcEEE
Confidence            6666  33466789999999999999999999999999999999999999999999999976 555555554 4799999


Q ss_pred             EEeCCCCCCc------------cCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           81 IGNKTDLKHL------------RAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        81 v~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      |+||+|+.+.            +.....++..+++.++ ++|++|||++|.|++++|+.+++.++
T Consensus       115 vgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SAk~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         115 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             EEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             EeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCCCCCcCHHHHHHHHHHHHc
Confidence            9999998542            3456778889999887 79999999999999999999998874

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9.5e-24  Score=149.01  Aligned_cols=126  Identities=20%  Similarity=0.347  Sum_probs=107.4

Q ss_pred             ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc---CCCCeEEEEEeC
Q 043745            8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA---DSNIVIMMIGNK   84 (174)
Q Consensus         8 ~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~piilv~nK   84 (174)
                      ..+.+.+++..+.+.+||++|+..+.     |++++|++|+|||+++++||+.+..|+..+....   ...+|+++|+||
T Consensus        41 ~~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k  115 (175)
T d2bmja1          41 YKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQ  115 (175)
T ss_dssp             EEEEEEETTEEEEEEEEECSSCCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEEC
T ss_pred             EEEEeecCceEEEEEEeecccccccc-----cccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeee
Confidence            44467889999999999999998653     7889999999999999999999999988876543   256899999999


Q ss_pred             CCCCC--ccCCCHHHHHHHHHH-hCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q 043745           85 TDLKH--LRAVATEDAQSYAER-EGLSFIETSALEAINVEKAFQTILSEIYRIISKK  138 (174)
Q Consensus        85 ~Dl~~--~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~  138 (174)
                      .|+..  .+.+..++++.++.+ .+++|++|||+++.|++++|..+++.+.....++
T Consensus       116 ~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~~~~  172 (175)
T d2bmja1         116 DRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQ  172 (175)
T ss_dssp             TTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHHHHHHHHHHHHHhhhhc
Confidence            88753  467888899888765 4689999999999999999999999998877654

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=2.2e-24  Score=153.10  Aligned_cols=134  Identities=42%  Similarity=0.680  Sum_probs=114.6

Q ss_pred             CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC----CCC
Q 043745            4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD----SNI   76 (174)
Q Consensus         4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~   76 (174)
                      ||+|   ..+.+...+..+.+.+||++|++.+...+..++..+|+++++||.++..++..+..|+..+.....    .++
T Consensus        33 ~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~i  112 (184)
T d1vg8a_          33 ATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENF  112 (184)
T ss_dssp             CCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGS
T ss_pred             CccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCC
Confidence            5665   334666788889999999999999999999999999999999999999999999999988866532    468


Q ss_pred             eEEEEEeCCCCCCccCCCHHHHHHHHHH-hCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q 043745           77 VIMMIGNKTDLKHLRAVATEDAQSYAER-EGLSFIETSALEAINVEKAFQTILSEIYRIISKK  138 (174)
Q Consensus        77 piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~  138 (174)
                      |+++|+||+|+.+ +.+..++..+++.. .++++++|||++|.|++++|+++++.+++...+.
T Consensus       113 p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~i~~~~~~~  174 (184)
T d1vg8a_         113 PFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV  174 (184)
T ss_dssp             CEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEeecccc-cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHHHHHHHHHhccccc
Confidence            9999999999976 55677777777655 5789999999999999999999999998876544

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.90  E-value=8.3e-24  Score=147.43  Aligned_cols=127  Identities=22%  Similarity=0.314  Sum_probs=97.1

Q ss_pred             CCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHH-hhcCCCCeEEEEE
Q 043745            4 PRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR-DHADSNIVIMMIG   82 (174)
Q Consensus         4 pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~-~~~~~~~piilv~   82 (174)
                      ||.|.. ...++.+.+.+.+||++|++.++..+..+++.+++++++||+++..++..+..|+.... .....+.|+++|+
T Consensus        32 ~t~~~~-~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~  110 (165)
T d1ksha_          32 PTLGFN-IKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFA  110 (165)
T ss_dssp             CCSSEE-EEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEE
T ss_pred             ceEeee-eeeccccccceeeeecCcchhhhhHHHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEE
Confidence            455422 23344455889999999999999999999999999999999999999998876665543 3333679999999


Q ss_pred             eCCCCCCccCCCHHHHHHHH-----HHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           83 NKTDLKHLRAVATEDAQSYA-----EREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        83 nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      ||.|+.+...+  ++.....     ...++++++|||++|+|++++|++|++++..
T Consensus       111 nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~i~~  164 (165)
T d1ksha_         111 NKQDLPGALSC--NAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS  164 (165)
T ss_dssp             ECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             eccccccccCH--HHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHHHHHHc
Confidence            99999764433  3332221     1224578999999999999999999988764

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.89  E-value=1.1e-24  Score=154.32  Aligned_cols=117  Identities=17%  Similarity=0.314  Sum_probs=91.3

Q ss_pred             CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhh-cCCCCeEEEEEeCCCCCCccCCC
Q 043745           16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH-ADSNIVIMMIGNKTDLKHLRAVA   94 (174)
Q Consensus        16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~   94 (174)
                      .+.+.+.+||++|++.+...+..++.++|++++|||+++..++..+..|+..+... ...+.|+++++||+|+.+.  ..
T Consensus        58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~--~~  135 (182)
T d1moza_          58 YKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LS  135 (182)
T ss_dssp             ETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CC
T ss_pred             eCCEEEEEEecccccccchhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccc--cC
Confidence            34478999999999999999999999999999999999999999998887765443 3357999999999999752  23


Q ss_pred             HHHHHHH-----HHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           95 TEDAQSY-----AEREGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        95 ~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      ..+....     +...++++++|||++|+|++++|++|++.+.++
T Consensus       136 ~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~~~~l~~~i~~~  180 (182)
T d1moza_         136 ASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE  180 (182)
T ss_dssp             HHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            3333222     233356799999999999999999999998764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.89  E-value=8.2e-24  Score=148.84  Aligned_cols=112  Identities=21%  Similarity=0.305  Sum_probs=91.2

Q ss_pred             eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCCCccCCCH
Q 043745           17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMIGNKTDLKHLRAVAT   95 (174)
Q Consensus        17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~   95 (174)
                      ..+.+.+||++|++.+...+..+++.+|++++|||+++..++..+..|+..+.... ..++|+++++||+|+.+...  .
T Consensus        58 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~--~  135 (176)
T d1fzqa_          58 QGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--A  135 (176)
T ss_dssp             TTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--H
T ss_pred             CCeeEeEeeccccccchhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEecccccccc--H
Confidence            34789999999999999999999999999999999999999999988877765433 35799999999999976332  2


Q ss_pred             HHHHHH-----HHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745           96 EDAQSY-----AEREGLSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        96 ~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      .+..+.     +...+++++++||++|+|++++|+||++.
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~~l~~~  175 (176)
T d1fzqa_         136 SEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN  175 (176)
T ss_dssp             HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHhc
Confidence            232222     22334679999999999999999999875

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.88  E-value=5.4e-24  Score=149.67  Aligned_cols=115  Identities=18%  Similarity=0.353  Sum_probs=92.0

Q ss_pred             CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHh-hcCCCCeEEEEEeCCCCCCccCC
Q 043745           15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRD-HADSNIVIMMIGNKTDLKHLRAV   93 (174)
Q Consensus        15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~piilv~nK~Dl~~~~~~   93 (174)
                      ....+.+.+||++|++.++..+..+++++++++||||+++.+++..+..|+..+.. ....+.|+++++||+|+.+.  .
T Consensus        52 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~--~  129 (173)
T d1e0sa_          52 TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--M  129 (173)
T ss_dssp             EETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--C
T ss_pred             eccceeeEEecCCCcchhhhHHHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccccc--c
Confidence            33446889999999999999999999999999999999999999999888777544 33357999999999999753  2


Q ss_pred             CHHHHHH-----HHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           94 ATEDAQS-----YAEREGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        94 ~~~~~~~-----~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      ...+...     .+...++.++++||++|+|++++|++|.+.+
T Consensus       130 ~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         130 KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             CHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHHhc
Confidence            2222222     2223356789999999999999999998764

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.88  E-value=9.6e-23  Score=142.02  Aligned_cols=124  Identities=21%  Similarity=0.380  Sum_probs=96.6

Q ss_pred             CCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEE
Q 043745            4 PRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMI   81 (174)
Q Consensus         4 pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv   81 (174)
                      ||+| ....+..  ..+.+++||++|++.+...+..++..++++++|||+++.+++..+..|+..+.... ..++|++||
T Consensus        33 ~T~~~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv  110 (164)
T d1zd9a1          33 PTVGFNMRKITK--GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVL  110 (164)
T ss_dssp             CCCSEEEEEEEE--TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEE
T ss_pred             ccceeeeeeeee--eeEEEEEeeccccccccccccccccccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEE
Confidence            5666 2223334  44789999999999999999999999999999999999999999988877765433 367999999


Q ss_pred             EeCCCCCCccCCCHHHHHHH-----HHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           82 GNKTDLKHLRAVATEDAQSY-----AEREGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        82 ~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      +||+|+.+..  ...+..+.     +...+++++++||++|+|++++|++|++.+
T Consensus       111 ~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~~~~  163 (164)
T d1zd9a1         111 GNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS  163 (164)
T ss_dssp             EECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred             Eeccccchhh--hHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHHHcc
Confidence            9999997532  22322222     223356799999999999999999998753

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.85  E-value=4.6e-22  Score=137.05  Aligned_cols=131  Identities=18%  Similarity=0.288  Sum_probs=103.3

Q ss_pred             CCCCCcccee--------------------EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHH
Q 043745            1 MGQPRLGKLC--------------------DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFEN   60 (174)
Q Consensus         1 ~g~pt~g~~~--------------------~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~   60 (174)
                      +|.|++|||.                    ....+...+.+.+||++|.+.+...+..++..+++++++||.+++.++..
T Consensus         6 vG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~   85 (160)
T d1r8sa_           6 VGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNE   85 (160)
T ss_dssp             ECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHH
T ss_pred             ECCCCCCHHHHHHHHhcCCCCccccceeeEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecChHHHHH
Confidence            4788888555                    34556677889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcC-CCCeEEEEEeCCCCCCccCC---CHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           61 VSRWLKELRDHAD-SNIVIMMIGNKTDLKHLRAV---ATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        61 ~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      +..|+..+..... ..+|+++++||.|+......   .......++...+++++++||++|+|++++|++|++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~l  160 (160)
T d1r8sa_          86 AREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL  160 (160)
T ss_dssp             HHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhcC
Confidence            9888777654333 57899999999998753221   11112223344467899999999999999999998763

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.76  E-value=4.4e-19  Score=124.10  Aligned_cols=112  Identities=18%  Similarity=0.290  Sum_probs=85.3

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCCCccCCCHH
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMIGNKTDLKHLRAVATE   96 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~   96 (174)
                      .+.+.+||+++++.+...+..++..++++++++|.++.+++.....++....... ....|+++|+||.|+.....  ..
T Consensus        58 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~  135 (177)
T d1zj6a1          58 NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT--VA  135 (177)
T ss_dssp             TEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC--HH
T ss_pred             ceEEEEeccccccccccchhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCc--HH
Confidence            3678999999999999999999999999999999999999988866555543333 26899999999999975332  23


Q ss_pred             HHHHHH-----HHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           97 DAQSYA-----EREGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        97 ~~~~~~-----~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      +.....     ...+++++++||++|+|++++|++|.+++
T Consensus       136 ~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         136 EISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             HHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHhcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            332222     22346799999999999999999999875

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=1.5e-18  Score=122.81  Aligned_cols=130  Identities=15%  Similarity=0.175  Sum_probs=93.2

Q ss_pred             CCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHH-----------HHHHHHHHHHhhc
Q 043745            4 PRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFE-----------NVSRWLKELRDHA   72 (174)
Q Consensus         4 pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~-----------~~~~~~~~i~~~~   72 (174)
                      ||+|.. +..++...+.+++||++|++.|+..|..|++.++++++|||+++.+++.           ....|...+....
T Consensus        28 ~t~~~~-~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~  106 (195)
T d1svsa1          28 AGTGIV-ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW  106 (195)
T ss_dssp             CCCSEE-EEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGG
T ss_pred             CCccEE-EEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccc
Confidence            556532 3455556688999999999999999999999999999999999887652           2344555554444


Q ss_pred             CCCCeEEEEEeCCCCCCc---------------cCCCHHHHHHH-HHH----------hCCcEEEEeccCCCCHHHHHHH
Q 043745           73 DSNIVIMMIGNKTDLKHL---------------RAVATEDAQSY-AER----------EGLSFIETSALEAINVEKAFQT  126 (174)
Q Consensus        73 ~~~~piilv~nK~Dl~~~---------------~~~~~~~~~~~-~~~----------~~~~~~~~Sa~~~~~i~~v~~~  126 (174)
                      ....|+++++||+|+...               ......+...+ ..+          ..+.+++|||+++.|++++|+.
T Consensus       107 ~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~  186 (195)
T d1svsa1         107 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDA  186 (195)
T ss_dssp             GTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             cCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHH
Confidence            567999999999996211               11112222211 111          1245789999999999999999


Q ss_pred             HHHHHHHH
Q 043745          127 ILSEIYRI  134 (174)
Q Consensus       127 l~~~i~~~  134 (174)
                      +.+.+++.
T Consensus       187 v~~~il~~  194 (195)
T d1svsa1         187 VTDVIIKN  194 (195)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            98888763

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=4.4e-17  Score=111.69  Aligned_cols=115  Identities=20%  Similarity=0.303  Sum_probs=90.4

Q ss_pred             EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCCCcc
Q 043745           13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLKHLR   91 (174)
Q Consensus        13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~   91 (174)
                      .+....+.+.+||+.|...+...+..++..++++++++|.++..++.....|+........ .+.|+++++||.|+... 
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~-  116 (166)
T d2qtvb1          38 ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA-  116 (166)
T ss_dssp             EECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSC-
T ss_pred             EeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEecccccccc-
Confidence            3444456789999999999999999999999999999999999999888777766654433 67899999999999752 


Q ss_pred             CCCHHHHHHHH------------HHhCCcEEEEeccCCCCHHHHHHHHHH
Q 043745           92 AVATEDAQSYA------------EREGLSFIETSALEAINVEKAFQTILS  129 (174)
Q Consensus        92 ~~~~~~~~~~~------------~~~~~~~~~~Sa~~~~~i~~v~~~l~~  129 (174)
                       ....+.....            ...++++++|||++|+|++++|+||.+
T Consensus       117 -~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         117 -VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             -CCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHHHHHTT
T ss_pred             -CCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHHHHHhC
Confidence             3334333222            122346999999999999999999864

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.71  E-value=1e-17  Score=117.63  Aligned_cols=108  Identities=20%  Similarity=0.209  Sum_probs=77.1

Q ss_pred             EEEEEEeCCCchhh--------hhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           19 IKAQIWDTAGQERY--------RAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        19 ~~l~l~D~~G~~~~--------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      ..+.+|||+|....        ......+++++|++++|+|+++...... ..|+..++... .+.|+++|+||+|+.+.
T Consensus        53 ~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~~-~~~piilv~NK~Dl~~~  130 (178)
T d1wf3a1          53 RQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED-ELVARALKPLV-GKVPILLVGNKLDAAKY  130 (178)
T ss_dssp             EEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGGT-TTSCEEEEEECGGGCSS
T ss_pred             eeeeecccccccccccccchhcccccccccccccceeeeechhhhhcccc-cchhhheeccc-cchhhhhhhcccccccC
Confidence            56899999997432        3334456789999999999987644332 34445554443 36899999999999653


Q ss_pred             cCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           91 RAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      .   .+..+.+...++ ..++++||+++.|++++++++++.+
T Consensus       131 ~---~~~~~~~~~~~~~~~~~~iSA~~~~gi~~L~~~i~~~l  169 (178)
T d1wf3a1         131 P---EEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM  169 (178)
T ss_dssp             H---HHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             H---HHHHHHHHhhcccCceEEEecCCCCCHHHHHHHHHHhC
Confidence            2   233445555555 5789999999999999999887643

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=3.3e-18  Score=121.53  Aligned_cols=131  Identities=14%  Similarity=0.161  Sum_probs=98.4

Q ss_pred             CCCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChh-----------hHHHHHHHHHHHHhh
Q 043745            3 QPRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPT-----------TFENVSRWLKELRDH   71 (174)
Q Consensus         3 ~pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-----------s~~~~~~~~~~i~~~   71 (174)
                      .||+|... ..+....+.+++||++|++.++..|..++.++++++++||.++.+           .++.+..|...+...
T Consensus        30 ~pTiG~~~-~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~  108 (200)
T d2bcjq2          30 VPTTGIIE-YPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP  108 (200)
T ss_dssp             CCCCSCEE-EEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCG
T ss_pred             CceeeEEE-EEEeccceeeeeccccccccccccccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhh
Confidence            48888432 345556688999999999999999999999999999999998754           355567787777665


Q ss_pred             cCCCCeEEEEEeCCCCCCcc----------------CCCHHHHHHHHHH----------hCCcEEEEeccCCCCHHHHHH
Q 043745           72 ADSNIVIMMIGNKTDLKHLR----------------AVATEDAQSYAER----------EGLSFIETSALEAINVEKAFQ  125 (174)
Q Consensus        72 ~~~~~piilv~nK~Dl~~~~----------------~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~v~~  125 (174)
                      ...+.|+++++||.|+.+.+                ..+......+...          ..+.++++||+++.|++++|+
T Consensus       109 ~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~  188 (200)
T d2bcjq2         109 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFA  188 (200)
T ss_dssp             GGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHH
T ss_pred             hccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHH
Confidence            55689999999999973221                1223333333221          124578999999999999999


Q ss_pred             HHHHHHHHH
Q 043745          126 TILSEIYRI  134 (174)
Q Consensus       126 ~l~~~i~~~  134 (174)
                      .+.+.|++.
T Consensus       189 ~i~~~I~~~  197 (200)
T d2bcjq2         189 AVKDTILQL  197 (200)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999888764

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.71  E-value=1.3e-17  Score=115.07  Aligned_cols=115  Identities=17%  Similarity=0.290  Sum_probs=89.8

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHH-hhcCCCCeEEEEEeCCCCCCccCCCHH
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR-DHADSNIVIMMIGNKTDLKHLRAVATE   96 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~-~~~~~~~piilv~nK~Dl~~~~~~~~~   96 (174)
                      .+.+.+||.++.+.+...+..++...+++++++|+.+..++.....++.... .......|+++++||.|+..... ..+
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~-~~~  126 (169)
T d1upta_          48 NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT-SSE  126 (169)
T ss_dssp             TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHH
T ss_pred             ceEEEEeeccccccccccchhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeecccccccc-HHH
Confidence            4678999999999999999999999999999999999888888866544433 33335789999999999976332 122


Q ss_pred             HHH----HHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           97 DAQ----SYAEREGLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        97 ~~~----~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      ...    .++...+++++++||++|.|++++|++|++.+.+
T Consensus       127 i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l~~~l~~  167 (169)
T d1upta_         127 MANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS  167 (169)
T ss_dssp             HHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            222    2334445789999999999999999999887643

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.67  E-value=1.7e-16  Score=111.41  Aligned_cols=113  Identities=17%  Similarity=0.094  Sum_probs=77.7

Q ss_pred             eEEEEEEEeCCCchhh-------hhhhHHhhccCCEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745           17 RTIKAQIWDTAGQERY-------RAITSAYYRGALGALLVYDVTKP--TTFENVSRWLKELRDHADSNIVIMMIGNKTDL   87 (174)
Q Consensus        17 ~~~~l~l~D~~G~~~~-------~~~~~~~~~~~d~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl   87 (174)
                      ....+.+|||+|....       .......+..++++++++|....  +.+.....|+....... .++|+++|+||+|+
T Consensus        47 ~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~iiv~NK~D~  125 (180)
T d1udxa2          47 EEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPAL-LRRPSLVALNKVDL  125 (180)
T ss_dssp             SSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHH-HHSCEEEEEECCTT
T ss_pred             CCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhhhhhhcccccccccchhhhhhhhhcccccc-chhhhhhhhhhhhh
Confidence            3446889999995321       12233456789999999998654  23333344444332211 25799999999999


Q ss_pred             CCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           88 KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      ...+.  .++..+.....+.+++++||++|.|++++++.|.+.+.
T Consensus       126 ~~~~~--~~~~~~~~~~~~~~~~~iSA~tg~gid~L~~~i~~~l~  168 (180)
T d1udxa2         126 LEEEA--VKALADALAREGLAVLPVSALTGAGLPALKEALHALVR  168 (180)
T ss_dssp             SCHHH--HHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hhHHH--HHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            76432  24455556667889999999999999999998877753

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=1.6e-15  Score=107.55  Aligned_cols=132  Identities=18%  Similarity=0.218  Sum_probs=87.3

Q ss_pred             CCCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhh----------HHHHHHHHHHHHh-h
Q 043745            3 QPRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTT----------FENVSRWLKELRD-H   71 (174)
Q Consensus         3 ~pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s----------~~~~~~~~~~i~~-~   71 (174)
                      .||+|.. ...++.+.+.+.+||++|++.++..|..+++++++++++||.++..+          +.....|+..+.. .
T Consensus        29 ~pTiG~~-~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  107 (200)
T d1zcba2          29 DPTKGIH-EYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR  107 (200)
T ss_dssp             CCCSSEE-EEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred             CCeeeeE-EEEEeeeeeeeeeecccceeeecccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhCh
Confidence            5888832 23444455789999999999999999999999999999999998543          3444444454433 2


Q ss_pred             cCCCCeEEEEEeCCCCCCc----------------cCCCHHHHHHHHHHh-----------CCcEEEEeccCCCCHHHHH
Q 043745           72 ADSNIVIMMIGNKTDLKHL----------------RAVATEDAQSYAERE-----------GLSFIETSALEAINVEKAF  124 (174)
Q Consensus        72 ~~~~~piilv~nK~Dl~~~----------------~~~~~~~~~~~~~~~-----------~~~~~~~Sa~~~~~i~~v~  124 (174)
                      ...+.|++|++||.|+.+.                ..-..+.+.++....           .+.++++||+++.||+++|
T Consensus       108 ~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf  187 (200)
T d1zcba2         108 VFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVF  187 (200)
T ss_dssp             GGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHH
T ss_pred             hhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHH
Confidence            2368999999999997321                111223333333221           2456789999999999999


Q ss_pred             HHHHHHHHHHH
Q 043745          125 QTILSEIYRII  135 (174)
Q Consensus       125 ~~l~~~i~~~~  135 (174)
                      +.+.+.|++..
T Consensus       188 ~~v~d~i~~~~  198 (200)
T d1zcba2         188 RDVKDTILHDN  198 (200)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99988887653

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.63  E-value=1.8e-15  Score=105.61  Aligned_cols=116  Identities=19%  Similarity=0.273  Sum_probs=85.1

Q ss_pred             EEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHh-hcCCCCeEEEEEeCCCCCCc
Q 043745           12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRD-HADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        12 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~piilv~nK~Dl~~~   90 (174)
                      +.+++  ..+.+||+.++..+...+..++...+++++++|+++...+.....++..... ....+.|+++++||.|++. 
T Consensus        52 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~-  128 (186)
T d1f6ba_          52 LTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE-  128 (186)
T ss_dssp             EEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT-
T ss_pred             EEecc--cccccccccchhhhhhHHhhhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccc-
Confidence            34444  4578999999999999999999999999999999999888887654444333 3335799999999999975 


Q ss_pred             cCCCHHHHHHHHHHh-----------------CCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           91 RAVATEDAQSYAERE-----------------GLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~-----------------~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                       .+...+........                 ++++++|||++|+|++++|+||++++
T Consensus       129 -~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         129 -AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             -CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             -cCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence             33444444433211                 24689999999999999999998753

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.61  E-value=1.1e-15  Score=106.23  Aligned_cols=112  Identities=21%  Similarity=0.156  Sum_probs=75.8

Q ss_pred             eEEEEEEEeCCCch---------hhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745           17 RTIKAQIWDTAGQE---------RYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL   87 (174)
Q Consensus        17 ~~~~l~l~D~~G~~---------~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl   87 (174)
                      ....+.+||++|..         .+......++..+|+++++.+.++...... ..|+..+...   ++|+|+|+||+|+
T Consensus        46 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~~-~~~~~~l~~~---~~pviiv~NK~Dl  121 (171)
T d1mkya1          46 YGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED-ESLADFLRKS---TVDTILVANKAEN  121 (171)
T ss_dssp             TTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH-HHHHHHHHHH---TCCEEEEEESCCS
T ss_pred             cccccccccccceeeeeccccccccccccccccccCcEEEEeecccccccccc-cccccccccc---cccccccchhhhh
Confidence            34568999999842         123344555789999999999876543332 3444555443   5799999999999


Q ss_pred             CCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           88 KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      .++  ...+...++.+....+++++||++|.|+++++++|.+.+.+.
T Consensus       122 ~~~--~~~~~~~~~~~~~~~~~i~iSAk~g~gid~L~~~i~~~l~e~  166 (171)
T d1mkya1         122 LRE--FEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEK  166 (171)
T ss_dssp             HHH--HHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             hhh--hhhHHHHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHhCCCC
Confidence            642  112222233322335789999999999999999998876554

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=7.9e-17  Score=110.92  Aligned_cols=104  Identities=19%  Similarity=0.189  Sum_probs=77.6

Q ss_pred             EEEEEEeCCCchhhh--------hhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           19 IKAQIWDTAGQERYR--------AITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~--------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      ..+.+||++|..+..        .....++..+|++++++|..+..++.....|...+.... .+.|+++|+||+|+.+.
T Consensus        49 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~iilv~NK~Dl~~~  127 (161)
T d2gj8a1          49 MPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLP-AKLPITVVRNKADITGE  127 (161)
T ss_dssp             EEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSC-TTCCEEEEEECHHHHCC
T ss_pred             ceeeeccccccccccccchhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhcc-cccceeeccchhhhhhh
Confidence            568899999954321        223456789999999999999887777766655555444 47999999999998653


Q ss_pred             cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745           91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      ...       +.+..+.+++++||+++.|+++++++|.+.
T Consensus       128 ~~~-------~~~~~~~~~~~iSAk~~~gi~~L~~~l~~~  160 (161)
T d2gj8a1         128 TLG-------MSEVNGHALIRLSARTGEGVDVLRNHLKQS  160 (161)
T ss_dssp             CCE-------EEEETTEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHH-------HHHhCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence            221       111235689999999999999999999875

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.59  E-value=6.6e-15  Score=103.26  Aligned_cols=111  Identities=17%  Similarity=0.121  Sum_probs=80.1

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC--CHH
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV--ATE   96 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~   96 (174)
                      ..+.++|++|+.+|.......+..+|++++++|+++....+....| ..+..   .++|+++|+||+|+.+....  ..+
T Consensus        59 ~~~~~~d~~g~~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~-~~~~~---~~~p~iiv~NKiD~~~~~~~~~~~~  134 (179)
T d1wb1a4          59 YRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHM-LILDH---FNIPIIVVITKSDNAGTEEIKRTEM  134 (179)
T ss_dssp             EEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH-HHHHH---TTCCBCEEEECTTSSCHHHHHHHHH
T ss_pred             ccccccccccccccccchhhhhhhccccccccccccccchhhhhhh-hhhhh---cCCcceeccccccccCHHHHHHHHH
Confidence            4578999999999999888899999999999999986443322222 22333   26899999999999763221  111


Q ss_pred             HHHHHHHHh----CCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           97 DAQSYAERE----GLSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        97 ~~~~~~~~~----~~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      ..+.+....    +.+++++||++|.|++++++.+++.+.+
T Consensus       135 ~~~~~~~~~~~~~~~~iv~iSA~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         135 IMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             HHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCCCCeEEEEEccCCcCHHHHHHHHHhcCCc
Confidence            222222221    3589999999999999999999887654

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.57  E-value=4.1e-15  Score=107.79  Aligned_cols=131  Identities=16%  Similarity=0.166  Sum_probs=90.4

Q ss_pred             CCCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhh----------HHHH-HHHHHHHHh
Q 043745            3 QPRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTT----------FENV-SRWLKELRD   70 (174)
Q Consensus         3 ~pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s----------~~~~-~~~~~~i~~   70 (174)
                      .||+| ..+.+.+++  +.+++||++|++.++..|..++++++++++++|.++.+.          +.+. ..|...+..
T Consensus        32 ~pTiG~~~~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~  109 (221)
T d1azta2          32 VLTSGIFETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN  109 (221)
T ss_dssp             CCCCSCEEEEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred             CCCCCeEEEEEEECc--EEEEEEecCccceeccchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcC
Confidence            48888 333445554  789999999999999999999999999999999986432          2222 233333333


Q ss_pred             hcCCCCeEEEEEeCCCCCCccC----C--------------------------CHHHHHHHH-----HHh--------CC
Q 043745           71 HADSNIVIMMIGNKTDLKHLRA----V--------------------------ATEDAQSYA-----ERE--------GL  107 (174)
Q Consensus        71 ~~~~~~piilv~nK~Dl~~~~~----~--------------------------~~~~~~~~~-----~~~--------~~  107 (174)
                      ....++|++|++||+|+.+.+.    .                          ...++..+.     +..        .+
T Consensus       110 ~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~  189 (221)
T d1azta2         110 RWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYC  189 (221)
T ss_dssp             GGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCE
T ss_pred             hhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccccCCCchhHHHHHHHHHHHHHHHhccCCCCCCce
Confidence            2236799999999999843211    0                          012222222     111        13


Q ss_pred             cEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745          108 SFIETSALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus       108 ~~~~~Sa~~~~~i~~v~~~l~~~i~~~~  135 (174)
                      -++++||.++.+++.+|+.+.+.|++.-
T Consensus       190 y~h~T~A~Dt~ni~~vf~~v~d~I~~~~  217 (221)
T d1azta2         190 YPHFTCAVDTENIRRVFNDCRDIIQRMH  217 (221)
T ss_dssp             EEEECCTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             eeeecceeccHHHHHHHHHHHHHHHHHH
Confidence            3578999999999999999988887653

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.52  E-value=1e-14  Score=106.06  Aligned_cols=117  Identities=18%  Similarity=0.148  Sum_probs=80.1

Q ss_pred             eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCC--
Q 043745           17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVA--   94 (174)
Q Consensus        17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~--   94 (174)
                      ....+.|+||||+.+|.......+..+|++|+|+|+.+.-.-.. ...+..+...   ++|+|+++||+|+.......  
T Consensus        68 ~~~~~~~iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~---~~p~iivlNK~D~~~~~~~~~~  143 (227)
T d1g7sa4          68 TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQT-QEALNILRMY---RTPFVVAANKIDRIHGWRVHEG  143 (227)
T ss_dssp             TCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHHT---TCCEEEEEECGGGSTTCCCCTT
T ss_pred             cccccccccccceecccccchhcccccceEEEEEecccCcccch-hHHHHHhhcC---CCeEEEEEECccCCCchhhhhh
Confidence            34568999999999998888888899999999999987432222 2233333332   68999999999985432110  


Q ss_pred             -----------H-------HHHHHHHHH---h---------------CCcEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q 043745           95 -----------T-------EDAQSYAER---E---------------GLSFIETSALEAINVEKAFQTILSEIYRIISK  137 (174)
Q Consensus        95 -----------~-------~~~~~~~~~---~---------------~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~  137 (174)
                                 .       ....+....   .               ..+++++||.+|.|++++++.+.....+.+.+
T Consensus       144 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~~~  222 (227)
T d1g7sa4         144 RPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLRE  222 (227)
T ss_dssp             CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSG
T ss_pred             HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence                       0       001111111   0               13689999999999999999988877665544

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.51  E-value=2.7e-14  Score=97.85  Aligned_cols=103  Identities=24%  Similarity=0.204  Sum_probs=69.6

Q ss_pred             EEEEEEeCCCchh--------h-hhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           19 IKAQIWDTAGQER--------Y-RAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        19 ~~l~l~D~~G~~~--------~-~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      ..+.+|||+|...        + .......+..+|++++|+|+++........-+ ..+     ...++++++||.|+.+
T Consensus        48 ~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~d~~~~~~~~~~~~~-~~~-----~~~~~i~~~~k~d~~~  121 (160)
T d1xzpa2          48 ILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKIL-ERI-----KNKRYLVVINKVDVVE  121 (160)
T ss_dssp             EEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHH-HHH-----TTSSEEEEEEECSSCC
T ss_pred             eeEEeccccccccCCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCcchhhhhhh-hhc-----ccccceeeeeeccccc
Confidence            5688999999421        1 01122346789999999999987655443222 111     2578999999999976


Q ss_pred             ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745           90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      ..  ..++.... ...+.+++++||++|.|+++++++|.++
T Consensus       122 ~~--~~~~~~~~-~~~~~~~~~vSA~~g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         122 KI--NEEEIKNK-LGTDRHMVKISALKGEGLEKLEESIYRE  159 (160)
T ss_dssp             CC--CHHHHHHH-HTCSTTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred             hh--hhHHHHHH-hCCCCcEEEEECCCCCCHHHHHHHHHhc
Confidence            32  23332221 1234689999999999999999988764

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.49  E-value=6.5e-14  Score=97.91  Aligned_cols=107  Identities=23%  Similarity=0.151  Sum_probs=69.6

Q ss_pred             EEEEeCCCch-----------h----hhhhhHHhhccCCEEEEEEeCCChhhHHHH----------HHHHHHHHhhcCCC
Q 043745           21 AQIWDTAGQE-----------R----YRAITSAYYRGALGALLVYDVTKPTTFENV----------SRWLKELRDHADSN   75 (174)
Q Consensus        21 l~l~D~~G~~-----------~----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~----------~~~~~~i~~~~~~~   75 (174)
                      +.||||||..           .    +.......++.+|++++|+|..........          .+++..+..   .+
T Consensus        45 ~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~  121 (184)
T d2cxxa1          45 HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LD  121 (184)
T ss_dssp             EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TT
T ss_pred             ceecccCCceeccccccccccccchhhhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cC
Confidence            5789999941           1    122334456789999999998754322211          112233333   36


Q ss_pred             CeEEEEEeCCCCCCccCCCHHHHHHHHHHhC-------CcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745           76 IVIMMIGNKTDLKHLRAVATEDAQSYAEREG-------LSFIETSALEAINVEKAFQTILSEIYR  133 (174)
Q Consensus        76 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~~i~~v~~~l~~~i~~  133 (174)
                      +|+++|+||+|+.+..+   .....+...++       ..++++||++|.|++++++++.+.+.+
T Consensus       122 ~p~iiv~NK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         122 IPTIVAVNKLDKIKNVQ---EVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             CCEEEEEECGGGCSCHH---HHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeeeehhhhHH---HHHHHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            89999999999764321   22233333332       248899999999999999999887764

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=1.3e-13  Score=98.40  Aligned_cols=77  Identities=18%  Similarity=0.286  Sum_probs=58.4

Q ss_pred             CCeEEEEEEEeCCCchhhh-hhhHHhhccCCEEEEEEeCCChhhH-HHHHHHHHHHH-hh--cCCCCeEEEEEeCCCCCC
Q 043745           15 EGRTIKAQIWDTAGQERYR-AITSAYYRGALGALLVYDVTKPTTF-ENVSRWLKELR-DH--ADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        15 ~~~~~~l~l~D~~G~~~~~-~~~~~~~~~~d~ii~v~d~~~~~s~-~~~~~~~~~i~-~~--~~~~~piilv~nK~Dl~~   89 (174)
                      ++..+.+.+||++|++.++ ..+..++..++++++|||+++..++ ....+|+..+. ..  ....+|++|++||+|+..
T Consensus        43 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~  122 (207)
T d2fh5b1          43 NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM  122 (207)
T ss_dssp             STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred             eeeeeeeeeeeccccccccchhhhhhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCC
Confidence            4556789999999999886 5778888999999999999997664 44445544432 22  224689999999999976


Q ss_pred             cc
Q 043745           90 LR   91 (174)
Q Consensus        90 ~~   91 (174)
                      .+
T Consensus       123 a~  124 (207)
T d2fh5b1         123 AK  124 (207)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.45  E-value=1.3e-12  Score=91.37  Aligned_cols=110  Identities=20%  Similarity=0.090  Sum_probs=73.3

Q ss_pred             EEEEEEeCCCchhh------------hhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 043745           19 IKAQIWDTAGQERY------------RAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTD   86 (174)
Q Consensus        19 ~~l~l~D~~G~~~~------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D   86 (174)
                      ..+.++|++|....            ......+++.+|++++|+|+.....- ....++..+...   +.|+|+|+||+|
T Consensus        56 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~~~~~-~~~~~~~~~~~~---~~~~i~v~nK~D  131 (186)
T d1mkya2          56 RKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITR-QDQRMAGLMERR---GRASVVVFNKWD  131 (186)
T ss_dssp             EEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHHT---TCEEEEEEECGG
T ss_pred             ceeeeeccCCccccccccccccccchhHHHHHHHhcCCEEEEeecccccchh-hHHHHHHHHHHc---CCceeeeccchh
Confidence            34688899886432            22344556789999999999865332 223344444332   689999999999


Q ss_pred             CCCccCCCHHHHHHHHHHh-----CCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745           87 LKHLRAVATEDAQSYAERE-----GLSFIETSALEAINVEKAFQTILSEIY  132 (174)
Q Consensus        87 l~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~v~~~l~~~i~  132 (174)
                      +.........+..+.....     ..+++++||++|.|+++++++|.+.+.
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSa~~g~gv~~L~~~i~~~~~  182 (186)
T d1mkya2         132 LVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYA  182 (186)
T ss_dssp             GSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             hhcchhhhhhhHHHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            8654444444444333332     257999999999999999999866544

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.44  E-value=2.9e-14  Score=100.09  Aligned_cols=108  Identities=12%  Similarity=0.106  Sum_probs=69.2

Q ss_pred             EEEEEeCCCchhhh----hhh---HHhhccCCEEEEEEeCCChhhHHHH---HHHHHHHHh--hcCCCCeEEEEEeCCCC
Q 043745           20 KAQIWDTAGQERYR----AIT---SAYYRGALGALLVYDVTKPTTFENV---SRWLKELRD--HADSNIVIMMIGNKTDL   87 (174)
Q Consensus        20 ~l~l~D~~G~~~~~----~~~---~~~~~~~d~ii~v~d~~~~~s~~~~---~~~~~~i~~--~~~~~~piilv~nK~Dl   87 (174)
                      .+.+|||||..+..    .+.   -..+..++.++++++....+.....   ..+......  ....++|+++|+||+|+
T Consensus        50 ~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl  129 (185)
T d1lnza2          50 SFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDM  129 (185)
T ss_dssp             EEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTS
T ss_pred             EEEEecCCCcccCchHHHHHHHHHHHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccch
Confidence            57899999963221    122   2334678999999987754332222   111111111  11246899999999999


Q ss_pred             CCccCCCHHHHHHHHHHh--CCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           88 KHLRAVATEDAQSYAERE--GLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      .+..    +..+.+...+  +.+++.+||++|.|++++++++.+.+
T Consensus       130 ~~~~----~~~~~~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~L  171 (185)
T d1lnza2         130 PEAA----ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQL  171 (185)
T ss_dssp             TTHH----HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred             HhHH----HHHHHHHHHhccCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            7532    3344444444  57899999999999999999887765

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.39  E-value=9.8e-13  Score=93.16  Aligned_cols=112  Identities=21%  Similarity=0.193  Sum_probs=78.5

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC--CH
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV--AT   95 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~   95 (174)
                      ...+.|+|+||+.+|.......+..+|++++|+|+.+.-......+.+..+....  ..+++++.||+|+.+....  ..
T Consensus        77 ~~~~~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~--~~~iiv~inK~D~~d~~~~~~~~  154 (195)
T d1kk1a3          77 VRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENY  154 (195)
T ss_dssp             EEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHH
T ss_pred             ceeEeeeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc--CccceeeeecccchhhHHHHHHH
Confidence            4568999999999999888888899999999999987532222333333333332  2458888999999763221  12


Q ss_pred             HHHHHHHHHhC---CcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           96 EDAQSYAEREG---LSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        96 ~~~~~~~~~~~---~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      ....++....+   ++++++||++|.|++++++.+.+.+
T Consensus       155 ~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         155 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            22333343332   6799999999999999998887653

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.34  E-value=3.5e-12  Score=90.97  Aligned_cols=110  Identities=18%  Similarity=0.193  Sum_probs=75.7

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCC--HH
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVA--TE   96 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~--~~   96 (174)
                      -.+.+.|+|||.+|-......+..+|++|+|+|+.+.-.-....+.+..+....  -.|+|++.||+|+.+.....  ..
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~--i~~iIV~vNK~Dl~~~~~~~~~~~  163 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYR  163 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT--CCCEEEEEECGGGSCHHHHHHHHH
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcC--CceeeeccccCCCccchHHHHHHH
Confidence            468999999999998888888899999999999987421122222333333322  24889999999997633211  11


Q ss_pred             HHHHHHHHh---CCcEEEEeccCCCCHHHHHHHHHHH
Q 043745           97 DAQSYAERE---GLSFIETSALEAINVEKAFQTILSE  130 (174)
Q Consensus        97 ~~~~~~~~~---~~~~~~~Sa~~~~~i~~v~~~l~~~  130 (174)
                      +...+....   +++++++||++|.|++++++.+.+.
T Consensus       164 ~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~  200 (205)
T d2qn6a3         164 QIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEY  200 (205)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhh
Confidence            122222222   3689999999999999999887765

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.32  E-value=2.5e-12  Score=90.71  Aligned_cols=89  Identities=13%  Similarity=0.075  Sum_probs=61.0

Q ss_pred             HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHh----CCcEEEEe
Q 043745           38 AYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAERE----GLSFIETS  113 (174)
Q Consensus        38 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~S  113 (174)
                      ..+..+|++++++|+++...- ...+++..+...   ++|+++|+||+|+.+..+. .+..+.+.+.+    +.+++.+|
T Consensus       101 ~~~~~~~~vi~viD~~~~~~~-~~~~~~~~l~~~---~~piivv~NK~D~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~S  175 (195)
T d1svia_         101 TTREELKAVVQIVDLRHAPSN-DDVQMYEFLKYY---GIPVIVIATKADKIPKGKW-DKHAKVVRQTLNIDPEDELILFS  175 (195)
T ss_dssp             HHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHHT---TCCEEEEEECGGGSCGGGH-HHHHHHHHHHHTCCTTSEEEECC
T ss_pred             ccccchhhhhhhhhccccccc-cccccccccccc---cCcceechhhccccCHHHH-HHHHHHHHHHhcccCCCCEEEEe
Confidence            344567999999999765322 223444555443   6899999999998653332 22233333333    35799999


Q ss_pred             ccCCCCHHHHHHHHHHHH
Q 043745          114 ALEAINVEKAFQTILSEI  131 (174)
Q Consensus       114 a~~~~~i~~v~~~l~~~i  131 (174)
                      |+++.|+++++++|.+.+
T Consensus       176 A~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         176 SETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             TTTCTTHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999988765

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.22  E-value=1.3e-11  Score=87.42  Aligned_cols=116  Identities=16%  Similarity=0.076  Sum_probs=79.4

Q ss_pred             EEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCcc
Q 043745           12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLR   91 (174)
Q Consensus        12 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~   91 (174)
                      +.+......+.++|+||+.+|.......+..+|++++|+|+.+...-+ ..+.+..+....  -.|+|++.||+|+....
T Consensus        59 ~~~~~~~~~~~~iDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~Q-T~~~~~~a~~~~--~~~iIv~iNK~D~~~~~  135 (196)
T d1d2ea3          59 VEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQIG--VEHVVVYVNKADAVQDS  135 (196)
T ss_dssp             EEEECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHHTT--CCCEEEEEECGGGCSCH
T ss_pred             EEEEeceeeEEeecCcchHHHHHHHHHHHhhcCeEEEEEEcCCCCchh-HHHHHHHHHHhc--CCcEEEEEecccccccH
Confidence            344455567899999999999988888889999999999999753322 233334333332  35789999999986432


Q ss_pred             CC---CHHHHHHHHHHhC-----CcEEEEeccCC----------CCHHHHHHHHHHH
Q 043745           92 AV---ATEDAQSYAEREG-----LSFIETSALEA----------INVEKAFQTILSE  130 (174)
Q Consensus        92 ~~---~~~~~~~~~~~~~-----~~~~~~Sa~~~----------~~i~~v~~~l~~~  130 (174)
                      +.   ...+.+.+....+     ++++++||++|          .++.++++.+.+.
T Consensus       136 ~~~~~i~~~i~~~l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~  192 (196)
T d1d2ea3         136 EMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY  192 (196)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhh
Confidence            21   1224445555454     56999999987          3677777665443

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.08  E-value=5.3e-10  Score=80.43  Aligned_cols=101  Identities=25%  Similarity=0.191  Sum_probs=70.2

Q ss_pred             eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-eEEEEEeCCCCCCccC-C-
Q 043745           17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNI-VIMMIGNKTDLKHLRA-V-   93 (174)
Q Consensus        17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-piilv~nK~Dl~~~~~-~-   93 (174)
                      ....+.|+|+|||.+|......-...+|++++|+|+.+.-.-+.... +..+...   ++ .+|++.||+|+.+..+ . 
T Consensus        87 ~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~-~~~~~~~---gv~~iiv~vNK~D~~~~~~~~~  162 (222)
T d1zunb3          87 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRH-SYIASLL---GIKHIVVAINKMDLNGFDERVF  162 (222)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHH-HHHHHHT---TCCEEEEEEECTTTTTSCHHHH
T ss_pred             cceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHH-HHHHHHc---CCCEEEEEEEccccccccceeh
Confidence            34568999999999999888888899999999999987533332222 2333332   44 4888999999975321 1 


Q ss_pred             --CHHHHHHHHHHhC-----CcEEEEeccCCCCHH
Q 043745           94 --ATEDAQSYAEREG-----LSFIETSALEAINVE  121 (174)
Q Consensus        94 --~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~  121 (174)
                        ...++..++...+     ++++++||.+|.|+.
T Consensus       163 ~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         163 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             hhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence              1123445555554     367899999999873

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.07  E-value=1.7e-10  Score=81.55  Aligned_cols=77  Identities=19%  Similarity=0.295  Sum_probs=55.1

Q ss_pred             ECCeEEEEEEEeCCCchhhhhhhHHhh----ccCCEEEEEEeCCC-hhhHHHHHHHHHH----HHhhcCCCCeEEEEEeC
Q 043745           14 VEGRTIKAQIWDTAGQERYRAITSAYY----RGALGALLVYDVTK-PTTFENVSRWLKE----LRDHADSNIVIMMIGNK   84 (174)
Q Consensus        14 ~~~~~~~l~l~D~~G~~~~~~~~~~~~----~~~d~ii~v~d~~~-~~s~~~~~~~~~~----i~~~~~~~~piilv~nK   84 (174)
                      ++.....+.+||++|++.+...+..++    ..++.+++++|..+ ..++..+..|+..    +......++|+++++||
T Consensus        41 ~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK  120 (209)
T d1nrjb_          41 ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNK  120 (209)
T ss_dssp             TTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEEC
T ss_pred             EEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEe
Confidence            344445689999999998776665554    45689999999775 5666666665543    33344468999999999


Q ss_pred             CCCCCc
Q 043745           85 TDLKHL   90 (174)
Q Consensus        85 ~Dl~~~   90 (174)
                      +|+.+.
T Consensus       121 ~D~~~~  126 (209)
T d1nrjb_         121 SELFTA  126 (209)
T ss_dssp             TTSTTC
T ss_pred             eccccc
Confidence            999764

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.06  E-value=1.6e-10  Score=82.17  Aligned_cols=100  Identities=17%  Similarity=0.112  Sum_probs=67.8

Q ss_pred             EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCCCcc
Q 043745           13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIV-IMMIGNKTDLKHLR   91 (174)
Q Consensus        13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~   91 (174)
                      .+..+...+.|+||||+.+|.......+..+|++|+|+|+.+.-..+....| ..+...   ++| +++++||+|+.+..
T Consensus        61 ~~~~~~~~i~iiDtPGh~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~-~~~~~~---gi~~iiv~iNK~D~~~~~  136 (204)
T d2c78a3          61 EYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI-LLARQV---GVPYIVVFMNKVDMVDDP  136 (204)
T ss_dssp             EEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHH-HHHHHT---TCCCEEEEEECGGGCCCH
T ss_pred             EEEeCCeEEEEEeCCCchhhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHH-HHHHHc---CCCeEEEEEEecccCCCH
Confidence            3434446689999999999999888889999999999999886555444334 333333   455 77889999986532


Q ss_pred             CC---CHHHHHHHHHHhC-----CcEEEEeccC
Q 043745           92 AV---ATEDAQSYAEREG-----LSFIETSALE  116 (174)
Q Consensus        92 ~~---~~~~~~~~~~~~~-----~~~~~~Sa~~  116 (174)
                      +.   ..++++.+....+     ++++..||..
T Consensus       137 ~~~~~~~~~i~~~l~~~~~~~~~i~~i~~sa~~  169 (204)
T d2c78a3         137 ELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALL  169 (204)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCcccceeeeeechh
Confidence            21   1233444444443     4678888753

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=1.6e-10  Score=79.81  Aligned_cols=107  Identities=21%  Similarity=0.148  Sum_probs=67.7

Q ss_pred             EEEEEeCCCchhhh---------hhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745           20 KAQIWDTAGQERYR---------AITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL   90 (174)
Q Consensus        20 ~l~l~D~~G~~~~~---------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~   90 (174)
                      .+.+||++|.....         .........+++++++.|..+....  ...+...+..   ...|+++++||.|+...
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~--~~~~~~~l~~---~~~~~i~v~~k~d~~~~  128 (179)
T d1egaa1          54 QAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPD--DEMVLNKLRE---GKAPVILAVNKVDNVQE  128 (179)
T ss_dssp             EEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCHH--HHHHHHHHHS---SSSCEEEEEESTTTCCC
T ss_pred             eeEeecCCCceecchhhhhhhhhhccccchhhcceeEEEEecCccchh--HHHHHHHhhh---ccCceeeeeeeeeccch
Confidence            45678887753221         1122223467888888887754322  2223233322   25788999999998764


Q ss_pred             cCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           91 RAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      +.......+.+...++ .+++++||++|.|++++++.+.+.+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l  170 (179)
T d1egaa1         129 KADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL  170 (179)
T ss_dssp             HHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred             hhhhhhHhhhhhhhcCCCCEEEEeCcCCCCHHHHHHHHHHhC
Confidence            4333344555566666 5899999999999999999876653

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.98  E-value=1.9e-09  Score=79.69  Aligned_cols=68  Identities=18%  Similarity=0.292  Sum_probs=55.0

Q ss_pred             CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745           16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL   87 (174)
Q Consensus        16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl   87 (174)
                      .+...++|+||||+.+|.......+.-+|++|+|+|+.+.-......-| +....+   ++|.|+++||+|.
T Consensus        68 ~~~~~~n~iDtPG~~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~~~---~lP~i~fINKmDr  135 (276)
T d2bv3a2          68 WKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEKY---KVPRIAFANKMDK  135 (276)
T ss_dssp             ETTEEEEEECCCSSSSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHHTT---TCCEEEEEECTTS
T ss_pred             cCCeEEEEecCCchhhhHHHHHHHHHhhhheEEeccccCCcchhHHHHH-HHHHHc---CCCEEEEEecccc
Confidence            3346789999999999999999999999999999999987555544445 333333   7999999999997

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=98.88  E-value=8.5e-09  Score=75.90  Aligned_cols=70  Identities=14%  Similarity=0.179  Sum_probs=54.9

Q ss_pred             EEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745           12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL   87 (174)
Q Consensus        12 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl   87 (174)
                      +..++  .+++|+||||+.+|.......+.-+|++|+|+|+.+.-.......| ......   ++|.++++||+|.
T Consensus        62 ~~~~~--~~~n~iDtPGh~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~-~~~~~~---~~p~~i~iNk~D~  131 (267)
T d2dy1a2          62 LLFRG--HRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAW-TVAERL---GLPRMVVVTKLDK  131 (267)
T ss_dssp             EEETT--EEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHHT---TCCEEEEEECGGG
T ss_pred             ccccc--cceeEEccCchhhhhhhhhhhhcccCceEEEeeccCCccchhHHHH-Hhhhhc---ccccccccccccc
Confidence            33444  5689999999999999888899999999999999986555444444 333333   6899999999996

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.87  E-value=3.3e-09  Score=77.05  Aligned_cols=104  Identities=12%  Similarity=0.093  Sum_probs=70.6

Q ss_pred             CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhH------HHHHHHHHHHHhhcCCCC-eEEEEEeCCCCC
Q 043745           16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTF------ENVSRWLKELRDHADSNI-VIMMIGNKTDLK   88 (174)
Q Consensus        16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~------~~~~~~~~~i~~~~~~~~-piilv~nK~Dl~   88 (174)
                      ....+++|.|+|||.+|...+..-+..+|++|+|+|+....--      -...+.+......   ++ ++|+++||+|+.
T Consensus        81 ~~~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~---gv~~iiv~iNKmD~~  157 (239)
T d1f60a3          81 TPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSV  157 (239)
T ss_dssp             CSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGG
T ss_pred             cCCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc---CCCeEEEEEECCCCC
Confidence            3446799999999999999888889999999999999864210      0122222222222   45 488899999986


Q ss_pred             CccCC----CHHHHHHHHHHhC-----CcEEEEeccCCCCHHH
Q 043745           89 HLRAV----ATEDAQSYAEREG-----LSFIETSALEAINVEK  122 (174)
Q Consensus        89 ~~~~~----~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  122 (174)
                      +....    ...+...++...+     ++++.+||..|.|+-+
T Consensus       158 ~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         158 KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            53211    1233455555554     4689999999988644

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.81  E-value=8.2e-09  Score=74.11  Aligned_cols=105  Identities=16%  Similarity=0.120  Sum_probs=69.8

Q ss_pred             CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhH------HHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745           15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTF------ENVSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus        15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~------~~~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      ......+.|.|||||.+|-.....-+.-+|++|+|+|+.+...-      ....+.+...... + -.++|++.||+|+.
T Consensus        77 ~~~~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~-~-~~~iIv~iNK~D~~  154 (224)
T d1jnya3          77 ETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM-G-LDQLIVAVNKMDLT  154 (224)
T ss_dssp             ECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT-T-CTTCEEEEECGGGS
T ss_pred             ecCCceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh-C-CCceEEEEEcccCC
Confidence            33446789999999999999998899999999999999975211      1222222222222 1 34688889999986


Q ss_pred             CccCC------CHHHHHHHHHHhC-----CcEEEEeccCCCCHH
Q 043745           89 HLRAV------ATEDAQSYAEREG-----LSFIETSALEAINVE  121 (174)
Q Consensus        89 ~~~~~------~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~  121 (174)
                      ....-      ...+...+....+     ++++++||.+|.|+.
T Consensus       155 ~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~  198 (224)
T d1jnya3         155 EPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT  198 (224)
T ss_dssp             SSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred             CccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCcc
Confidence            42110      1122344444443     468999999998874

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.80  E-value=1.3e-08  Score=74.15  Aligned_cols=104  Identities=18%  Similarity=0.233  Sum_probs=58.8

Q ss_pred             EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChh---hHH---HHHHHHHHHHhhcCCCC-eEEEEEeCCCCCCc
Q 043745           18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPT---TFE---NVSRWLKELRDHADSNI-VIMMIGNKTDLKHL   90 (174)
Q Consensus        18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~-piilv~nK~Dl~~~   90 (174)
                      ...+.|.|+||+..|-.....-...+|++++|+|+.+..   ++.   ...+.+..+...   ++ +++++.||+|+...
T Consensus       101 ~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~---~i~~iiv~iNKmD~~~~  177 (245)
T d1r5ba3         101 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ---GINHLVVVINKMDEPSV  177 (245)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT---TCSSEEEEEECTTSTTC
T ss_pred             cceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc---CCCeEEEEEEcCCCCcc
Confidence            356899999999999988888889999999999998741   110   222222322222   34 48889999999642


Q ss_pred             cCCCH-------HHHHHHHHHh-C------CcEEEEeccCCCCHHHHHH
Q 043745           91 RAVAT-------EDAQSYAERE-G------LSFIETSALEAINVEKAFQ  125 (174)
Q Consensus        91 ~~~~~-------~~~~~~~~~~-~------~~~~~~Sa~~~~~i~~v~~  125 (174)
                      . ..+       +++..+.... +      ++++++||++|+|+.++++
T Consensus       178 ~-~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         178 Q-WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             S-SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             c-hhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            1 111       1222222222 2      4799999999999976543

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.67  E-value=6e-08  Score=66.57  Aligned_cols=85  Identities=16%  Similarity=0.103  Sum_probs=50.3

Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC--CHHHHHHHHHHh--CCcEEEEeccCC
Q 043745           42 GALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV--ATEDAQSYAERE--GLSFIETSALEA  117 (174)
Q Consensus        42 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~--~~~~~~~Sa~~~  117 (174)
                      ..+.++++.+........ ...++..+...   ..++++++||.|+.+....  ..+..++.....  ..+++.+||++|
T Consensus        98 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vSA~~g  173 (188)
T d1puia_          98 SLQGLVVLMDIRHPLKDL-DQQMIEWAVDS---NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKK  173 (188)
T ss_dssp             TEEEEEEEEETTSCCCHH-HHHHHHHHHHT---TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTT
T ss_pred             heeEEEEeecccccchhH-HHHHHHHhhhc---cccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEEeCCCC
Confidence            344555555555433222 23344444433   5789999999998653221  111222222222  247899999999


Q ss_pred             CCHHHHHHHHHHH
Q 043745          118 INVEKAFQTILSE  130 (174)
Q Consensus       118 ~~i~~v~~~l~~~  130 (174)
                      .|++++++.|.+.
T Consensus       174 ~Gid~L~~~i~~~  186 (188)
T d1puia_         174 QGVDKLRQKLDTW  186 (188)
T ss_dssp             BSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            9999999987654

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.54  E-value=8.9e-08  Score=72.64  Aligned_cols=70  Identities=20%  Similarity=0.258  Sum_probs=56.2

Q ss_pred             CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745           15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK   88 (174)
Q Consensus        15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~   88 (174)
                      +++.+.++|+|||||.+|.......++-+|++++|+|+.+.-......-|... ..   .++|+++++||+|..
T Consensus        92 ~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a-~~---~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          92 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQA-LG---ERIKPVVVINKVDRA  161 (341)
T ss_dssp             CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHH-HH---TTCEEEEEEECHHHH
T ss_pred             cccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHH-HH---cCCCeEEEEECcccc
Confidence            45678899999999999999988889999999999999987555544444332 22   368999999999974

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.53  E-value=1.1e-07  Score=67.95  Aligned_cols=86  Identities=19%  Similarity=0.198  Sum_probs=62.6

Q ss_pred             HHhhccCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHH--hCCcEEEEe
Q 043745           37 SAYYRGALGALLVYDVTKP-TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAER--EGLSFIETS  113 (174)
Q Consensus        37 ~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~S  113 (174)
                      +..+.+.|.+++|+++.++ -+...+.+|+-.....   +++.+||.||+||.+..+  .+....+...  .+++++.+|
T Consensus         5 RP~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~---~i~pvIvlnK~DL~~~~~--~~~~~~~~~~~~~~~~v~~vS   79 (225)
T d1u0la2           5 KPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN---ELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTS   79 (225)
T ss_dssp             TTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT---TCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECC
T ss_pred             CCCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc---CCCEEEEEeCcccCCHHH--HHHHHHhhcccccceeEEEec
Confidence            3456789999999999875 4566778877665543   789999999999975321  2233333332  347899999


Q ss_pred             ccCCCCHHHHHHHH
Q 043745          114 ALEAINVEKAFQTI  127 (174)
Q Consensus       114 a~~~~~i~~v~~~l  127 (174)
                      |+++.|++++...+
T Consensus        80 a~~~~g~~~L~~~l   93 (225)
T d1u0la2          80 AKTGMGIEELKEYL   93 (225)
T ss_dssp             TTTCTTHHHHHHHH
T ss_pred             cccchhHhhHHHHh
Confidence            99999999987755

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.37  E-value=7e-07  Score=65.60  Aligned_cols=94  Identities=12%  Similarity=0.099  Sum_probs=65.5

Q ss_pred             hhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEe
Q 043745           34 AITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETS  113 (174)
Q Consensus        34 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  113 (174)
                      ......++.+|+||+|.|+.++.+..+  ..+..+.   . +.|+|+|+||+||.+...  .++..++....+...+.+|
T Consensus         7 r~i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~---~-~Kp~IlVlNK~DLv~~~~--~~~w~~~f~~~~~~~i~is   78 (273)
T d1puja_           7 REVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL---K-NKPRIMLLNKADKADAAV--TQQWKEHFENQGIRSLSIN   78 (273)
T ss_dssp             HHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC---S-SSCEEEEEECGGGSCHHH--HHHHHHHHHTTTCCEEECC
T ss_pred             HHHHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHH---c-CCCeEEEEECccCCchHH--HHHHHHHHHhcCCccceee
Confidence            345667899999999999988765442  1222222   2 579999999999976321  2233333445567899999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHH
Q 043745          114 ALEAINVEKAFQTILSEIYRII  135 (174)
Q Consensus       114 a~~~~~i~~v~~~l~~~i~~~~  135 (174)
                      +.++.+..++...+.+.+....
T Consensus        79 a~~~~~~~~~~~~~~~~l~~~~  100 (273)
T d1puja_          79 SVNGQGLNQIVPASKEILQEKF  100 (273)
T ss_dssp             TTTCTTGGGHHHHHHHHHHHHH
T ss_pred             cccCCCccccchhhhhhhhhhh
Confidence            9999999888887776666543

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.27  E-value=1e-06  Score=62.88  Aligned_cols=110  Identities=13%  Similarity=-0.041  Sum_probs=64.9

Q ss_pred             EEEEEeCCCchhhhhhh---HHhh--ccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCcc
Q 043745           20 KAQIWDTAGQERYRAIT---SAYY--RGALGALLVYDVTKP---TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLR   91 (174)
Q Consensus        20 ~l~l~D~~G~~~~~~~~---~~~~--~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~   91 (174)
                      .+.+.|++|+..+....   ....  ...+.+++++|+...   +.+.........+...  -..|.++++||+|+....
T Consensus        96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~--~~~~~ivvinK~D~~~~~  173 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLSEE  173 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCCHH
T ss_pred             ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH--hCCCceeeeeccccccHH
Confidence            37889999998764322   2222  246689999998643   3222221111111111  268999999999986532


Q ss_pred             CCCHH--------------------------HHHHHHHH--hCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745           92 AVATE--------------------------DAQSYAER--EGLSFIETSALEAINVEKAFQTILSEI  131 (174)
Q Consensus        92 ~~~~~--------------------------~~~~~~~~--~~~~~~~~Sa~~~~~i~~v~~~l~~~i  131 (174)
                      +....                          .......+  ..++++++||++|+|+++++..+.+..
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         174 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            11000                          00001111  136899999999999999999887764

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.26  E-value=1.6e-07  Score=67.32  Aligned_cols=87  Identities=15%  Similarity=0.138  Sum_probs=62.8

Q ss_pred             HHhhccCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHH---HHHHHHHhCCcEEEE
Q 043745           37 SAYYRGALGALLVYDVTKP-TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATED---AQSYAEREGLSFIET  112 (174)
Q Consensus        37 ~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~  112 (174)
                      +..+.+.|.+++|+++.++ -++..+.+++-.....   +++.+||.||+||.+..+. .+.   ..+....+|++++.+
T Consensus         5 RP~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~---~i~pvIvlnK~DL~~~~~~-~~~~~~~~~~y~~~g~~v~~~   80 (231)
T d1t9ha2           5 RPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN---DIQPIICITKMDLIEDQDT-EDTIQAYAEDYRNIGYDVYLT   80 (231)
T ss_dssp             TTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT---TCEEEEEEECGGGCCCHHH-HHHHHHHHHHHHHHTCCEEEC
T ss_pred             CCCccccCEEEEEEECCCCCCCHHHHHHHHHHHHHc---CCCEEEEEecccccccHHH-HHHHHHHHHHHhhccccceee
Confidence            3445789999999999875 4677777776655443   7899999999999753221 122   233345678999999


Q ss_pred             eccCCCCHHHHHHHH
Q 043745          113 SALEAINVEKAFQTI  127 (174)
Q Consensus       113 Sa~~~~~i~~v~~~l  127 (174)
                      |++++.|++++...+
T Consensus        81 Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          81 SSKDQDSLADIIPHF   95 (231)
T ss_dssp             CHHHHTTCTTTGGGG
T ss_pred             ecCChhHHHHHHHhh
Confidence            999999988776644

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=2.3e-06  Score=66.11  Aligned_cols=106  Identities=9%  Similarity=0.075  Sum_probs=60.5

Q ss_pred             EEEEeCCCchhhhhh-----hHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC------
Q 043745           21 AQIWDTAGQERYRAI-----TSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH------   89 (174)
Q Consensus        21 l~l~D~~G~~~~~~~-----~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~------   89 (174)
                      +.||||||.......     ....+..+|.+|++.|..-.+...   .++..+...   ++|+++|.||+|...      
T Consensus       109 ~~l~DtPG~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~d~---~l~~~l~~~---~k~~~~V~nK~D~~~~~~~~~  182 (400)
T d1tq4a_         109 VVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDI---DIAKAISMM---KKEFYFVRTKVDSDITNEADG  182 (400)
T ss_dssp             EEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCHHHH---HHHHHHHHT---TCEEEEEECCHHHHHHHHHTT
T ss_pred             EEEEeCCCcccccccHHHHHHHhhhhcceEEEEecCCCCCHHHH---HHHHHHHHc---CCCEEEEEeCcccccchhhhc
Confidence            779999997543322     223356789988887754322222   333444443   689999999999521      


Q ss_pred             -ccCCCHHH----HH----HHHHHhCC---cEEEEeccCC--CCHHHHHHHHHHHHH
Q 043745           90 -LRAVATED----AQ----SYAEREGL---SFIETSALEA--INVEKAFQTILSEIY  132 (174)
Q Consensus        90 -~~~~~~~~----~~----~~~~~~~~---~~~~~Sa~~~--~~i~~v~~~l~~~i~  132 (174)
                       ......+.    .+    ......++   +++.+|..+.  .++..+.+.+.+.+.
T Consensus       183 ~~~~~~~e~~l~~ir~~~~~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~  239 (400)
T d1tq4a_         183 EPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP  239 (400)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhH
Confidence             11122222    11    11223333   5788887543  477887777766643

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.90  E-value=1.1e-05  Score=58.60  Aligned_cols=81  Identities=12%  Similarity=-0.003  Sum_probs=44.6

Q ss_pred             EECCeEEEEEEEeCCCchhhh-------hhhHHh--hccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC--CCeEEEE
Q 043745           13 QVEGRTIKAQIWDTAGQERYR-------AITSAY--YRGALGALLVYDVTKPTTFENVSRWLKELRDHADS--NIVIMMI   81 (174)
Q Consensus        13 ~~~~~~~~l~l~D~~G~~~~~-------~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv   81 (174)
                      ..++  ..+.|+||||..+..       .....+  ....|+++||++++...--......+..+....+.  -.++++|
T Consensus        76 ~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv  153 (257)
T d1h65a_          76 SRAG--FTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVA  153 (257)
T ss_dssp             EETT--EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEE
T ss_pred             Eecc--EEEEEEeeecccCCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEE
Confidence            4455  568999999954221       111211  24678999999887532111112222333322221  2478999


Q ss_pred             EeCCCCCCccCCCH
Q 043745           82 GNKTDLKHLRAVAT   95 (174)
Q Consensus        82 ~nK~Dl~~~~~~~~   95 (174)
                      .||.|.........
T Consensus       154 ~t~~D~~~~~~~~~  167 (257)
T d1h65a_         154 LTHAQFSPPDGLPY  167 (257)
T ss_dssp             EECCSCCCGGGCCH
T ss_pred             EECcccCCcCCCcH
Confidence            99999865444433

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.80  E-value=4.5e-05  Score=57.04  Aligned_cols=105  Identities=12%  Similarity=0.090  Sum_probs=62.5

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHH
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDA   98 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~   98 (174)
                      +.+.|++|.|.-.-...   ...-+|.+++|......+..+.++.   .+..     ..=++|+||.|+.+.........
T Consensus       144 ~d~iiiETVG~gq~e~~---~~~~~D~~v~v~~p~~GD~iQ~~k~---gilE-----~aDi~vvNKaD~~~~~~~~~~~~  212 (323)
T d2qm8a1         144 FDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGIKK---GIFE-----LADMIAVNKADDGDGERRASAAA  212 (323)
T ss_dssp             CCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------CCT---THHH-----HCSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCeEEEeehhhhhhhhh---hhcccceEEEEeeccchhhhhhhhh---hHhh-----hhheeeEeccccccchHHHHHHH
Confidence            34567777664332222   2345999999999987765554322   1222     23477889999876433322222


Q ss_pred             HHHHHH----------hCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745           99 QSYAER----------EGLSFIETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus        99 ~~~~~~----------~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      ..+...          +..+++.+||++++|++++++++.+.....
T Consensus       213 ~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~~  258 (323)
T d2qm8a1         213 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKL  258 (323)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHHH
Confidence            233322          234799999999999999999997765443

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=0.00015  Score=54.29  Aligned_cols=88  Identities=15%  Similarity=0.061  Sum_probs=51.2

Q ss_pred             hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC--CHHHHHHHHHH-------hCCcE
Q 043745           39 YYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV--ATEDAQSYAER-------EGLSF  109 (174)
Q Consensus        39 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~-------~~~~~  109 (174)
                      +...+|.+++|.+....+..+.++.-   +...     +=++|+||.|+......  ...+.+.....       +..++
T Consensus       164 i~~~aD~~l~v~~P~~Gd~iq~~k~g---i~e~-----aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V  235 (327)
T d2p67a1         164 VARMVDCFISLQIAGGGDDLQGIKKG---LMEV-----ADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRV  235 (327)
T ss_dssp             HHTTCSEEEEEECC------CCCCHH---HHHH-----CSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEE
T ss_pred             hhhccceEEEEecCCCchhhhhhchh---hhcc-----ccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCccee
Confidence            44578999999987665554443332   2222     23677899998763221  11111221211       12469


Q ss_pred             EEEeccCCCCHHHHHHHHHHHHHHH
Q 043745          110 IETSALEAINVEKAFQTILSEIYRI  134 (174)
Q Consensus       110 ~~~Sa~~~~~i~~v~~~l~~~i~~~  134 (174)
                      +.+||.+|+|++++++.|.+.....
T Consensus       236 ~~~SA~~g~Gi~eL~~~I~~~~~~l  260 (327)
T d2p67a1         236 LTCSALEKRGIDEIWHAIIDFKTAL  260 (327)
T ss_dssp             EECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999887765443

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.91  E-value=0.0043  Score=44.75  Aligned_cols=41  Identities=17%  Similarity=0.114  Sum_probs=28.3

Q ss_pred             CCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEecc
Q 043745           75 NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSAL  115 (174)
Q Consensus        75 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  115 (174)
                      ..|+++++|..+......-..+....++...+..++.+||+
T Consensus       199 ~KP~i~v~Nv~E~~~~~~~~~~~l~~~~~~~~~~vI~isa~  239 (278)
T d1jala1         199 LKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA  239 (278)
T ss_dssp             TSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred             cchhhhhhccccccccccHHHHHHHHHHHhcCCeEEEeEHH
Confidence            58899999965433212222466777788888899999984

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.24  E-value=0.0095  Score=43.07  Aligned_cols=68  Identities=15%  Similarity=0.102  Sum_probs=43.5

Q ss_pred             EEEEEeCCCchh-------------hhhhhHHhhccCCE-EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 043745           20 KAQIWDTAGQER-------------YRAITSAYYRGALG-ALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKT   85 (174)
Q Consensus        20 ~l~l~D~~G~~~-------------~~~~~~~~~~~~d~-ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~   85 (174)
                      .+.|+|+||...             ...+...|+...+. +++|.++...-+-.....|...+.   +...++++|.||+
T Consensus       126 ~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~---~~~~r~i~Vltk~  202 (299)
T d2akab1         126 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD---PQGQRTIGVITKL  202 (299)
T ss_dssp             SEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC---TTCSSEEEEEECG
T ss_pred             CeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHhC---cCCCceeeEEecc
Confidence            378999999531             23456677777774 556666665444444445555443   2346899999999


Q ss_pred             CCCCc
Q 043745           86 DLKHL   90 (174)
Q Consensus        86 Dl~~~   90 (174)
                      |+...
T Consensus       203 D~~~~  207 (299)
T d2akab1         203 DLMDE  207 (299)
T ss_dssp             GGSCT
T ss_pred             ccccc
Confidence            98543

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.95  E-value=0.019  Score=41.62  Aligned_cols=40  Identities=10%  Similarity=0.171  Sum_probs=27.7

Q ss_pred             CeEEEEEeCCCCC--CccCCCHHHHHHHHHHh--CCcEEEEecc
Q 043745           76 IVIMMIGNKTDLK--HLRAVATEDAQSYAERE--GLSFIETSAL  115 (174)
Q Consensus        76 ~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~--~~~~~~~Sa~  115 (174)
                      +|+++|+|+.|..  ........+..+++...  +..++.+||+
T Consensus       215 KP~i~v~Nv~E~~~~~~~n~~~~~v~~~~~~~~~~~~vi~isa~  258 (296)
T d1ni3a1         215 KPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVA  258 (296)
T ss_dssp             SCEEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHH
T ss_pred             CCeeeeccccchhhhhhhhHHHHHHHHHHHhhCCCCeEEEEEHH
Confidence            6999999998642  22223356677777765  4678999984

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.70  E-value=0.015  Score=42.11  Aligned_cols=67  Identities=15%  Similarity=0.167  Sum_probs=42.4

Q ss_pred             EEEEEeCCCchh-------------hhhhhHHhhccCCEEEEEE-eCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 043745           20 KAQIWDTAGQER-------------YRAITSAYYRGALGALLVY-DVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKT   85 (174)
Q Consensus        20 ~l~l~D~~G~~~-------------~~~~~~~~~~~~d~ii~v~-d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~   85 (174)
                      .+.|+|+||...             ...++..|+.+++.+++++ +....-.-.....+...+   .+...++++|.||+
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~---~~~~~r~i~Vitk~  208 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITKL  208 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEECT
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHh---CcCCCeEEEEEecc
Confidence            478999999532             2356788899999877776 433222222223344443   23346899999999


Q ss_pred             CCCC
Q 043745           86 DLKH   89 (174)
Q Consensus        86 Dl~~   89 (174)
                      |...
T Consensus       209 D~~~  212 (306)
T d1jwyb_         209 DLMD  212 (306)
T ss_dssp             TSSC
T ss_pred             cccc
Confidence            9854

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.91  E-value=0.013  Score=42.90  Aligned_cols=36  Identities=28%  Similarity=0.233  Sum_probs=21.0

Q ss_pred             EEEEEEeCCCchhh----hhhhHH---hhccCCEEEEEEeCCC
Q 043745           19 IKAQIWDTAGQERY----RAITSA---YYRGALGALLVYDVTK   54 (174)
Q Consensus        19 ~~l~l~D~~G~~~~----~~~~~~---~~~~~d~ii~v~d~~~   54 (174)
                      .+++|+|+||.-..    ..+...   .++.+|++++|+|+.+
T Consensus        71 ~~i~~~D~pGli~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          71 IPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             EEEEEEECC---------------CCCSSTTCSEEEEEEETTC
T ss_pred             ccEEEEECCCcccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            56899999995321    122333   3468999999999864

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=92.97  E-value=0.14  Score=35.07  Aligned_cols=92  Identities=12%  Similarity=0.031  Sum_probs=54.9

Q ss_pred             EEEEEEeCCCchhhhhh----hHHhh--------ccCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 043745           19 IKAQIWDTAGQERYRAI----TSAYY--------RGALGALLVYDVTKP-TTFENVSRWLKELRDHADSNIVIMMIGNKT   85 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~----~~~~~--------~~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piilv~nK~   85 (174)
                      ..+.|+||+|...+...    +..+.        ...+-++||.|++.. +....+...+..+      ++. =++.||.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~------~~~-~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV------GLT-GVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH------CCS-EEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc------CCc-eEEEecc
Confidence            35799999997554322    11111        134678999999864 3444444443333      112 3567999


Q ss_pred             CCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHH
Q 043745           86 DLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKA  123 (174)
Q Consensus        86 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v  123 (174)
                      |-...    .-.+..++...++|+.+++  +|++.+++
T Consensus       162 Det~~----~G~~l~~~~~~~~Pi~~i~--~Gq~p~Dl  193 (207)
T d1okkd2         162 DGTAK----GGVLIPIVRTLKVPIKFVG--VGEGPDDL  193 (207)
T ss_dssp             TSSCC----CTTHHHHHHHHCCCEEEEE--CSSSTTCE
T ss_pred             CCCCC----ccHHHHHHHHHCCCEEEEe--CCCChHhC
Confidence            96432    2345667888899988777  45555544

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=92.80  E-value=0.33  Score=33.17  Aligned_cols=91  Identities=20%  Similarity=0.173  Sum_probs=55.1

Q ss_pred             EEEEEEeCCCchhhhh------hhHHhh--ccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745           19 IKAQIWDTAGQERYRA------ITSAYY--RGALGALLVYDVTKPT-TFENVSRWLKELRDHADSNIVIMMIGNKTDLKH   89 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~------~~~~~~--~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~   89 (174)
                      ..+.|+||+|...+..      ....+.  -..+-+++|.|++..+ ..+.+..   .... .  ++. =++.||.|-..
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~---~~~~-~--~~~-~lI~TKlDet~  167 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASK---FNQA-S--KIG-TIIITKMDGTA  167 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHH---HHHH-C--TTE-EEEEECTTSCS
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhh---hhcc-c--Ccc-eEEEecccCCC
Confidence            4579999999654321      111111  2457889999987653 3333222   2221 1  222 25679999643


Q ss_pred             ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHH
Q 043745           90 LRAVATEDAQSYAEREGLSFIETSALEAINVEK  122 (174)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  122 (174)
                          ..-.+..++...++|+.+++  +|+++++
T Consensus       168 ----~~G~~l~~~~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         168 ----KGGGALSAVAATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             ----CHHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             ----cccHHHHHHHHHCcCEEEEe--CCCCccc
Confidence                35667778888999988887  5766654

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.02  E-value=0.99  Score=30.26  Aligned_cols=76  Identities=14%  Similarity=0.132  Sum_probs=48.6

Q ss_pred             EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE-EEEeCCCCCCccCCCHHH
Q 043745           19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM-MIGNKTDLKHLRAVATED   97 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~   97 (174)
                      +.+.++|+++.-..  .....+..+|.++++...+ ..++..+.+.+..+.+.   ++|++ +|.|+.+... ..+....
T Consensus       112 ~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~---~~~~~giv~N~~~~~~-~~~~~~~  184 (237)
T d1g3qa_         112 FDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRSD-RDIPPEA  184 (237)
T ss_dssp             CSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSCT-TCCCHHH
T ss_pred             CCEEEEcccccccc--cchhhhhhhhccccccccc-ceecchhhHHHHHHhhh---hhhhhhhhhccccccc-chhhhHH
Confidence            45789999876532  2333466799999998864 55666666666655543   56765 7889998654 3344444


Q ss_pred             HHHH
Q 043745           98 AQSY  101 (174)
Q Consensus        98 ~~~~  101 (174)
                      .+++
T Consensus       185 ~~~~  188 (237)
T d1g3qa_         185 AEDV  188 (237)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            4333

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=91.00  E-value=0.44  Score=32.50  Aligned_cols=92  Identities=15%  Similarity=0.119  Sum_probs=55.1

Q ss_pred             EEEEEEeCCCchhhhhh----hH---Hhhc-----cCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 043745           19 IKAQIWDTAGQERYRAI----TS---AYYR-----GALGALLVYDVTKP-TTFENVSRWLKELRDHADSNIVIMMIGNKT   85 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~----~~---~~~~-----~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piilv~nK~   85 (174)
                      +.+.|+||+|...+...    +.   ..++     ..+-+++|.|++.. +....+...+..+      + +-=++.||.
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~------~-~~~lIlTKl  164 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV------G-LTGITLTKL  164 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS------C-CCEEEEECC
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc------C-CceEEEeec
Confidence            35789999996543321    11   1222     24688999998754 3343333332222      1 223567999


Q ss_pred             CCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHH
Q 043745           86 DLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKA  123 (174)
Q Consensus        86 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v  123 (174)
                      |-...    .-.+...+...++|+.+++  +|++++++
T Consensus       165 De~~~----~G~~l~~~~~~~~Pi~~i~--~Gq~v~Dl  196 (211)
T d2qy9a2         165 DGTAK----GGVIFSVADQFGIPIRYIG--VGERIEDL  196 (211)
T ss_dssp             TTCTT----TTHHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred             CCCCC----ccHHHHHHHHHCCCEEEEe--CCCCcccC
Confidence            96432    3456677888899988887  67776553

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.77  E-value=0.98  Score=30.69  Aligned_cols=72  Identities=14%  Similarity=0.059  Sum_probs=42.1

Q ss_pred             cCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhC--CcEEEEeccCCC
Q 043745           42 GALGALLVYDVTKPTTFENV-SRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREG--LSFIETSALEAI  118 (174)
Q Consensus        42 ~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~  118 (174)
                      ..+++|.++|+...+....- ..+..++..      -=++|.||+|+...    .+..++..+.++  .++++++ .-..
T Consensus       121 ~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~------AD~ivlNK~Dl~~~----~~~~~~~l~~lNP~a~Ii~~~-~g~v  189 (222)
T d1nija1         121 LLDGVIALVDAVHADEQMNQFTIAQSQVGY------ADRILLTKTDVAGE----AEKLHERLARINARAPVYTVT-HGDI  189 (222)
T ss_dssp             EEEEEEEEEETTTHHHHHHHCHHHHHHHHT------CSEEEEECTTTCSC----THHHHHHHHHHCSSSCEEECC-SSCC
T ss_pred             cccchhhhhhhhhhhhhhhhhHHHHHHHHh------CCcccccccccccH----HHHHHHHHHHHhCCCeEEEee-CCcc
Confidence            46889999999875432222 223333322      12567899999752    245666666665  6777654 3234


Q ss_pred             CHHHHH
Q 043745          119 NVEKAF  124 (174)
Q Consensus       119 ~i~~v~  124 (174)
                      .+..+|
T Consensus       190 ~~~~ll  195 (222)
T d1nija1         190 DLGLLF  195 (222)
T ss_dssp             CGGGGS
T ss_pred             CHHHhh
Confidence            555554

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=90.22  E-value=0.62  Score=31.56  Aligned_cols=92  Identities=16%  Similarity=0.081  Sum_probs=51.1

Q ss_pred             EEEEEEeCCCchhhhhh----hHHh--hccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCcc
Q 043745           19 IKAQIWDTAGQERYRAI----TSAY--YRGALGALLVYDVTKPT-TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLR   91 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~----~~~~--~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~   91 (174)
                      ..+.|+||+|...+...    +..+  .-+.+-+++|.|....+ ..+.+..+...+    +  + -=++.+|.|-..  
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~----~--~-~~~I~TKlDe~~--  163 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV----G--V-TGLVLTKLDGDA--  163 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHT----C--C-CEEEEECGGGCS--
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhC----C--C-CeeEEeecCccc--
Confidence            35789999997544321    1111  23568899999987653 233222222221    1  1 125679999543  


Q ss_pred             CCCHHHHHHHHHHhCCcEEEEeccCCCCHHHH
Q 043745           92 AVATEDAQSYAEREGLSFIETSALEAINVEKA  123 (174)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v  123 (174)
                        ..-.+..++...++|+.+++  .|+..+++
T Consensus       164 --~~G~~l~~~~~~~~Pi~~i~--~Gq~pedl  191 (207)
T d1ls1a2         164 --RGGAALSARHVTGKPIYFAG--VSEKPEGL  191 (207)
T ss_dssp             --SCHHHHHHHHHHCCCEEEEC--------CC
T ss_pred             --cchHHHHHHHHHCCCEEEEe--CCCChhhc
Confidence              23566777888899987775  34444433

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=90.22  E-value=0.35  Score=33.08  Aligned_cols=92  Identities=21%  Similarity=0.076  Sum_probs=54.4

Q ss_pred             EEEEEEeCCCchhhhhh----hHHhhc--------cCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 043745           19 IKAQIWDTAGQERYRAI----TSAYYR--------GALGALLVYDVTKP-TTFENVSRWLKELRDHADSNIVIMMIGNKT   85 (174)
Q Consensus        19 ~~l~l~D~~G~~~~~~~----~~~~~~--------~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piilv~nK~   85 (174)
                      +.+.|+||+|...+...    ...+.+        ..+-.++|.|++.. +.+..+   .......   + +-=+|.+|.
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~---~~~~~~~---~-~~~lI~TKl  166 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQA---KIFKEAV---N-VTGIILTKL  166 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHH---HHHHHHS---C-CCEEEEECG
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhh---hhhcccc---C-CceEEEecc
Confidence            35799999996544322    112211        14678999998754 233333   2222222   1 223567999


Q ss_pred             CCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHH
Q 043745           86 DLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKA  123 (174)
Q Consensus        86 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v  123 (174)
                      |-..    ..-.+...+...++|+.+++  +|++++++
T Consensus       167 De~~----~~G~~l~~~~~~~~Pi~~i~--~Gq~v~Dl  198 (213)
T d1vmaa2         167 DGTA----KGGITLAIARELGIPIKFIG--VGEKAEDL  198 (213)
T ss_dssp             GGCS----CTTHHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred             cCCC----cccHHHHHHHHHCCCEEEEe--CCCCcccC
Confidence            9643    12356677888899988887  57776554

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=84.29  E-value=2.5  Score=27.28  Aligned_cols=54  Identities=17%  Similarity=0.262  Sum_probs=37.6

Q ss_pred             CChhhHHHH-HHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEe
Q 043745           53 TKPTTFENV-SRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETS  113 (174)
Q Consensus        53 ~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  113 (174)
                      +|+.+++.. .+....|..   ...|+|+++.......    ..+++.+|++.++++++.+-
T Consensus         3 sd~~~l~~~v~~~~~~l~~---AkrPvIi~G~g~~~~~----a~~~l~~lae~~~~Pv~tt~   57 (175)
T d1zpda1           3 SDEASLNAAVDETLKFIAN---RDKVAVLVGSKLRAAG----AEEAAVKFTDALGGAVATMA   57 (175)
T ss_dssp             CCHHHHHHHHHHHHHHHTT---CSCEEEEECTTTTTTT----CHHHHHHHHHHHCCCEEEEG
T ss_pred             CChHHHHHHHHHHHHHHHc---CCCEEEEECcCccccc----hHHHHHHHHHhhceeEEecc
Confidence            455566654 333333332   3689999999887653    47889999999999988544

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=80.36  E-value=6.6  Score=26.67  Aligned_cols=88  Identities=14%  Similarity=0.094  Sum_probs=51.9

Q ss_pred             EEEEEEeCCCchhh-hhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCe-EEEEEeCCCCCCccCCCH
Q 043745           19 IKAQIWDTAGQERY-RAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIV-IMMIGNKTDLKHLRAVAT   95 (174)
Q Consensus        19 ~~l~l~D~~G~~~~-~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p-iilv~nK~Dl~~~~~~~~   95 (174)
                      +.+.++|+++.-.. ..........+|.++++.+. +..++..+...+..+..... .+.+ .-++.|+.+...    ..
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~----~~  190 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN----EY  190 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC----CH
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCC----cc
Confidence            45789999764322 22233333568888888776 45666655555555544332 2333 346779987654    24


Q ss_pred             HHHHHHHHHhCCcEEE
Q 043745           96 EDAQSYAEREGLSFIE  111 (174)
Q Consensus        96 ~~~~~~~~~~~~~~~~  111 (174)
                      +..+.+++.++.+++.
T Consensus       191 ~~~~~~~~~~~~~~~~  206 (269)
T d1cp2a_         191 ELLDAFAKELGSQLIH  206 (269)
T ss_dssp             HHHHHHHHHHTCCEEE
T ss_pred             chhhhhHhhcCCeEEE
Confidence            5567778888876553