Citrus Sinensis ID: 043750

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGNYNLDRNVVGGILEDALQNIQHVATARWEHMHAREKISYPEFEGFAILPGNEIPKWFCFQSMGSLIKLKTPPA
Secondary Structure (PSIPRED)
cEEccccccEEccccccccccccEEcccccccccccccccccccEEEcccccccccccccccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEccccccccccccccccEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHcccEEEccccccccccccccccccEEEccccccccccccccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEccccccHHHcccccccEEEEEcccc
Coil and Loop (DISEMBL)
ylylsknnferiPKSIIQLSKLSCLYLsycgklqslpklpcslhklhahhctaleslsglfpksyescpprfelngnynldrnvvGGILEDALQNIQHVATARWEHMHarekisypefegfailpgneipkwfcfqsmgsliklktppa
Flexible Loop (DISEMBL)
ylylsknnferipKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGNYNLDRNVVGGILEDALQNIQHVATARWEHMHAREKISYPEFEGFAILPGNEIPKWFCFQSMgsliklktppa
Low Complexity Region (SEG)
YLYLSKNNFERIPKSIIQlsklsclylsycGKLQSLPKLPCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGNYNLDRNVVGGILEDALQNIQHVATARWEHMHAREKISYPEFEGFAILPGNEIPKWFCFQSMGSLIKLKTPPA
Disordered region (IsUnstruct)
*******NFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGNYNLDRNVVGGILEDALQNIQHVATARWEHMHAREKISYPEFEGFAILPGNEIPKWFCFQSMGSLIK******
Disordered Region (DISOPRED)
YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGNYNLDRNVVGGILEDALQNIQHVATARWEHMHAREKISYPEFEGFAILPGNEIPKWFCFQSMGSLIKLKTPP*
Disordered Region (DISEMBL)
YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGNYNLDRNVVGGILEDALQNIQHVATARWEHMHAREKISYPEFEGFAILPGNEIPKWFCFQSMGSLIKLKTPPA
Disordered Region (DISPRO)
YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGNYNLDRNVVGGILEDALQNIQHVATARWEHMHAREKISYPEFEGFAILPGNEIPKWFCFQSMGSLIKLKTP**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGNYNLDRNVVGGILEDALQNIQHVATARWEHMHAREKISYPEFEGFAILPGNEIPKWFCFQSMGSLIKLKTPPA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	149	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.879	0.114	0.298	8e-07
O82500	1095	Putative disease resistan	no	no	0.751	0.102	0.272	0.0002

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 69/151 (45%), Gaps = 20/151 (13%)

Query: 2   LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLSGLF 61
           L LS+NNFE +P SI QL  L  L L  C +L  LP+LP  L++LH     AL+ +  L 
Sbjct: 863 LDLSRNNFEHLPSSIAQLGALQSLDLKDCQRLTQLPELPPELNELHVDCHMALKFIHYLV 922

Query: 62  PKSYESCPPRFELNGNYNLDRNVVGGILEDALQNIQHVATARWEHMHA-REKISYPEFEG 120
            K  +    R +L+  +N           D + N+   A   ++++ + R  IS  +   
Sbjct: 923 TKRKK--LHRVKLDDAHN-----------DTMYNL--FAYTMFQNISSMRHDISASDSLS 967

Query: 121 FAILPGN----EIPKWFCFQSMGSLIKLKTP 147
             +  G     +IP WF  Q   S + +  P
Sbjct: 968 LTVFTGQPYPEKIPSWFHHQGWDSSVSVNLP 998

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 24/136 (17%)

Query: 9   FERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLSGLFPKSYESC 68
            E IP+ +  L +L  + +SYC  + SLPKLP S+  L A +C +L+ L G F       
Sbjct: 778 LETIPRYLKYLPRLQMIDISYCINIISLPKLPGSVSALTAVNCESLQILHGHFR------ 831

Query: 69  PPRFELNGNYNLDRNVVGGILEDALQNIQHVATARWEHMHAREKISYPEFEGFAILPGNE 128
                   N ++  N +         N   +     E +H    I    +    +LPG  
Sbjct: 832 --------NKSIHLNFI---------NCLKLGQRAQEKIHRSVYIHQSSYIA-DVLPGEH 873

Query: 129 IPKWFCFQSMGSLIKL 144
           +P +F ++S GS I +
Sbjct: 874 VPAYFSYRSTGSSIMI 889

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
255544956	1403	leucine-rich repeat containing protein,	0.959	0.101	0.381	3e-16
359486075	1291	PREDICTED: TMV resistance protein N-like	0.966	0.111	0.363	4e-15
147770134	1414	hypothetical protein VITISV_040107 [Viti	0.966	0.101	0.363	4e-15
359496034	1132	PREDICTED: TMV resistance protein N-like	0.899	0.118	0.356	6e-15
224131066	1176	tir-nbs-lrr resistance protein [Populus	0.892	0.113	0.382	7e-15
224113213	687	predicted protein [Populus trichocarpa]	0.899	0.195	0.367	8e-15
296090597	1201	unnamed protein product [Vitis vinifera]	0.899	0.111	0.356	8e-15
359493483	1274	PREDICTED: TMV resistance protein N-like	0.973	0.113	0.371	1e-14
451798990	1335	TMV resistance protein N-like protein 7	0.973	0.108	0.371	1e-14
451798988	1219	TMV resistance protein N-like protein 6	0.932	0.114	0.367	2e-14

>gi|255544956|ref|XP_002513539.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223547447|gb|EEF48942.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/152 (38%), Positives = 85/152 (55%), Gaps = 9/152 (5%)

Query: 2    LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLSG-- 59
            L L  NNF RIP +I QLS L  L +SYC +L++LP+LP  +  L AH+CT+L+++S   
Sbjct: 1039 LLLKGNNFMRIPATIRQLSWLEVLDISYCKRLKALPELPQRIRVLVAHNCTSLKTVSSPL 1098

Query: 60   -LFPKSYESCPPR---FELNGNYNLDRNVVGGILEDALQNIQHVATARWEHMHAREKISY 115
              F +S E  P     F      +L++N    I+E AL   QH+ATA  E + + E+I  
Sbjct: 1099 IQFQESQEQSPDDKYGFTFANCVSLEKNARSNIVESALLKTQHLATAVLELLTSYEEILV 1158

Query: 116  PEFEGFAILPGNEIPKWFCFQSMGSLIKLKTP 147
                 F   PG+EIP+ F +Q+ G+ +    P
Sbjct: 1159 SPVVCF---PGSEIPECFRYQNTGASVTTLLP 1187

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486075|ref|XP_002273047.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 83/154 (53%), Gaps = 10/154 (6%)

Query: 2    LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLSGLF 61
            L LS+NNF  +P S+ +L  L  L + +C  LQSLP+LP S+ +L A+ CT+LE+ S  +
Sbjct: 978  LDLSRNNFITVPTSLSRLPHLRRLIVEHCKNLQSLPELPSSIKELLANDCTSLETFS--Y 1035

Query: 62   PKSYESCPPR------FELNGNYNLDRNVVGGILEDALQNIQHVATARWEHMHAREKISY 115
            P S  + P R      FE +  + L  N     +E  LQ I+ VA+ +     +     Y
Sbjct: 1036 PSS--AYPLRKFGDFNFEFSNCFRLVGNEQSDTVEAILQEIRLVASIQKSMAPSEHSARY 1093

Query: 116  PEFEGFAILPGNEIPKWFCFQSMGSLIKLKTPPA 149
             E    A++PG+ IP+WF  QS G  I ++ PP 
Sbjct: 1094 GESRYDAVVPGSRIPEWFTHQSEGDSITVELPPG 1127

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770134|emb|CAN76615.1| hypothetical protein VITISV_040107 [Vitis vinifera]

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 83/154 (53%), Gaps = 10/154 (6%)

Query: 2    LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLSGLF 61
            L LS+NNF  +P S+ +L  L  L + +C  LQSLP+LP S+ +L A+ CT+LE+ S  +
Sbjct: 951  LDLSRNNFITVPTSLSRLPHLRRLIVEHCKNLQSLPELPSSIKELLANDCTSLETFS--Y 1008

Query: 62   PKSYESCPPR------FELNGNYNLDRNVVGGILEDALQNIQHVATARWEHMHAREKISY 115
            P S  + P R      FE +  + L  N     +E  LQ I+ VA+ +     +     Y
Sbjct: 1009 PSS--AYPLRKFGDFNFEFSNCFRLVGNEQSDTVEAILQEIRLVASIQKSMAPSEHSARY 1066

Query: 116  PEFEGFAILPGNEIPKWFCFQSMGSLIKLKTPPA 149
             E    A++PG+ IP+WF  QS G  I ++ PP 
Sbjct: 1067 GESRYDAVVPGSRIPEWFTHQSEGDSITVELPPG 1100

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496034|ref|XP_002277500.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 84/157 (53%), Gaps = 23/157 (14%)

Query: 1   YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLS-- 58
           YL LS NNF  +P S+ QLS+L  L L  C +LQ+L +LP S+ ++ AH+C +LE++S  
Sbjct: 792 YLDLSGNNFISLPSSMSQLSQLVSLKLQNCRRLQALSELPSSIKEIDAHNCMSLETISNR 851

Query: 59  GLFPK----SYESCPPRFELNGNYNLDRNVVGGILEDALQNIQHVATARWEHMHAREKIS 114
            LFP     S+  C             +N +G +L       Q +AT    H  +R    
Sbjct: 852 SLFPSLRHVSFGECL-------KIKTYQNNIGSML-------QALATFLQTHKRSRYARD 897

Query: 115 YPE---FEGFAILPGNEIPKWFCFQSMGSLIKLKTPP 148
            PE    E   ++PG+EIP WF +QS G+++ ++ PP
Sbjct: 898 NPESVTIEFSTVVPGSEIPDWFSYQSSGNVVNIELPP 934

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131066|ref|XP_002328445.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222838160|gb|EEE76525.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 77/141 (54%), Gaps = 8/141 (5%)

Query: 2    LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLSGLF 61
            L LS N+FERIP +I QL  L  L L  C +LQ LP+LP SL  L A +C +L SL+ +F
Sbjct: 922  LRLSCNDFERIPANIKQLPMLIKLDLHGCERLQHLPELPSSLQVLMASYCISLRSLASIF 981

Query: 62   ---PKSYESCPPRFELNGNYNLDRNVVGGILEDALQNIQHVATARWEHMHAREKISYPEF 118
                K Y +   +F  +    LD+N    I+ED    I+ +A++    +  RE    P  
Sbjct: 982  IQGGKEYAAASQQFNFSNCLKLDQNACNRIMEDVHLRIRRMASS----LFNREYFGKPIR 1037

Query: 119  EGFAILPGNEIPKWFCFQSMG 139
                I PG E+P+WFC+++ G
Sbjct: 1038 VRLCI-PGLEVPEWFCYKNTG 1057

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113213|ref|XP_002332638.1| predicted protein [Populus trichocarpa] gi|222832865|gb|EEE71342.1| predicted protein [Populus trichocarpa]

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/155 (36%), Positives = 87/155 (56%), Gaps = 21/155 (13%)

Query: 2   LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLSGLF 61
           L LS+ +FERIP SI  L+KLS LYL  C +LQ LP+LP +L  L A  C +L+S++ +F
Sbjct: 426 LRLSEIDFERIPASIKHLTKLSKLYLDDCKRLQCLPELPSTLQVLIASGCISLKSVASIF 485

Query: 62  ---PKSYESCPPRFELNGNYNLDRNVVGGILEDALQNIQHVATARWEHMHAREKISYPEF 118
               + YE+    F  +G   LD+N    I+      IQ +AT+          + Y E+
Sbjct: 486 MQGDREYEA--QEFNFSGCLQLDQNSRTRIMGATRLRIQRMATS----------LFYQEY 533

Query: 119 EGFAI-----LPGNEIPKWFCFQSM-GSLIKLKTP 147
            G  I     +PG+E+P+WF +++  GS +K++ P
Sbjct: 534 HGKPIRVRLCIPGSEVPEWFSYKNREGSSVKIRQP 568

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090597|emb|CBI40966.3| unnamed protein product [Vitis vinifera]

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 84/157 (53%), Gaps = 23/157 (14%)

Query: 1   YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLS-- 58
           YL LS NNF  +P S+ QLS+L  L L  C +LQ+L +LP S+ ++ AH+C +LE++S  
Sbjct: 818 YLDLSGNNFISLPSSMSQLSQLVSLKLQNCRRLQALSELPSSIKEIDAHNCMSLETISNR 877

Query: 59  GLFPK----SYESCPPRFELNGNYNLDRNVVGGILEDALQNIQHVATARWEHMHAREKIS 114
            LFP     S+  C             +N +G +L       Q +AT    H  +R    
Sbjct: 878 SLFPSLRHVSFGECL-------KIKTYQNNIGSML-------QALATFLQTHKRSRYARD 923

Query: 115 YPE---FEGFAILPGNEIPKWFCFQSMGSLIKLKTPP 148
            PE    E   ++PG+EIP WF +QS G+++ ++ PP
Sbjct: 924 NPESVTIEFSTVVPGSEIPDWFSYQSSGNVVNIELPP 960

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493483|ref|XP_003634610.1| PREDICTED: TMV resistance protein N-like, partial [Vitis vinifera]

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 80/148 (54%), Gaps = 3/148 (2%)

Query: 2    LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESL--SG 59
            L LS+N+F  IP S+  LS+L  L L YC  LQSLP+LP S+  L+AH CT+LE+   S 
Sbjct: 913  LDLSRNSFITIPASLSGLSRLRSLTLEYCKSLQSLPELPSSVESLNAHSCTSLETFTCSS 972

Query: 60   LFPKSYESCPPRFELNGNYNLDRNVVGGILEDALQNIQHVATARWEHMHAREKISYPEFE 119
                S +    RF     + L  N    I+   L+ IQ +++   + +     I  P  E
Sbjct: 973  SAYTSKKFGDLRFNFTNCFRLGENQGSDIVGAILEGIQLMSSIP-KFLVPDRGIPTPHNE 1031

Query: 120  GFAILPGNEIPKWFCFQSMGSLIKLKTP 147
              A++PGN IP+WF  QS+G  + ++ P
Sbjct: 1032 YNALVPGNRIPEWFRHQSVGCSVNIELP 1059

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451798990|gb|AGF69193.1| TMV resistance protein N-like protein 7 [Vitis labrusca]

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 80/148 (54%), Gaps = 3/148 (2%)

Query: 2    LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESL--SG 59
            L LS+N+F  IP S+  LS+L  L L YC  LQSLP+LP S+  L+AH CT+LE+   S 
Sbjct: 984  LDLSRNSFITIPASLSGLSRLRSLTLEYCKSLQSLPELPSSVESLNAHSCTSLETFTCSS 1043

Query: 60   LFPKSYESCPPRFELNGNYNLDRNVVGGILEDALQNIQHVATARWEHMHAREKISYPEFE 119
                S +    RF     + L  N    I+   L+ IQ +++   + +     I  P  E
Sbjct: 1044 SAYTSKKFGDLRFNFTNCFRLGENQGSDIVGAILEGIQLMSSIP-KFLVPDRGIPTPHNE 1102

Query: 120  GFAILPGNEIPKWFCFQSMGSLIKLKTP 147
              A++PGN IP+WF  QS+G  + ++ P
Sbjct: 1103 YNALVPGNRIPEWFRHQSVGCSVNIELP 1130

Source: Vitis labrusca

Species: Vitis labrusca

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451798988|gb|AGF69192.1| TMV resistance protein N-like protein 6 [Vitis labrusca]

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/155 (36%), Positives = 82/155 (52%), Gaps = 16/155 (10%)

Query: 2    LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESL---S 58
            L LS+N+F  IP S+  LS+L  L L YC  LQSLP+LP S+  L+AH CT+LE+    S
Sbjct: 976  LDLSRNSFITIPASLSGLSRLRSLTLEYCKSLQSLPELPSSVESLNAHSCTSLETFSCSS 1035

Query: 59   GLFPKSYESCPPRFELNGNYNLDRNVVGGILEDALQNIQHVAT-----ARWEHMHAREKI 113
            G +  S +    RF     + L  N    I+   L+ IQ +++       W        I
Sbjct: 1036 GAYT-SKKFGDLRFNFTNCFRLGENQGSDIVGAILEGIQLMSSIPKFLVPW-------GI 1087

Query: 114  SYPEFEGFAILPGNEIPKWFCFQSMGSLIKLKTPP 148
              P  E  A++PG+ IP+WF  QS+G  + ++ PP
Sbjct: 1088 PTPHNEYNALVPGSRIPEWFRHQSVGCSVNIELPP 1122

Source: Vitis labrusca

Species: Vitis labrusca

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.966	0.118	0.315	6.6e-10
TAIR|locus:2122965	1210	AT4G19510 [Arabidopsis thalian	0.966	0.119	0.315	3.6e-09
TAIR|locus:2122209	1179	AT4G36150 [Arabidopsis thalian	0.946	0.119	0.286	2.6e-06
TAIR|locus:2153328	1231	AT5G45230 [Arabidopsis thalian	0.744	0.090	0.285	3.9e-06
TAIR|locus:2827629	1355	AT2G17050 [Arabidopsis thalian	0.906	0.099	0.277	5.1e-06
TAIR|locus:2122925	417	AT4G19470 [Arabidopsis thalian	0.973	0.347	0.268	6.2e-06
TAIR|locus:2153207	1165	AT5G45060 [Arabidopsis thalian	0.953	0.121	0.264	7e-06
TAIR|locus:2081810	1226	AT3G51570 [Arabidopsis thalian	0.187	0.022	0.448	1.1e-05
TAIR|locus:2158475	1217	RPS4 "RESISTANT TO P. SYRINGAE	0.966	0.118	0.271	1.5e-05
TAIR|locus:2122199	1607	AT4G36140 [Arabidopsis thalian	0.624	0.057	0.294	2.7e-05

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 47/149 (31%), Positives = 69/149 (46%)

Query:     2 LYLSKNNFERIPKSIIQXXXXXXXXXXXXGKLQSLPKLPCSLHKLHAHHCTALESLSG-L 60
             L LS NN E +P+S  Q              L+SLP LP +L  L AH C +LE+L+  L
Sbjct:   883 LCLSGNNIENLPESFNQLNNLKWFDLKFCKMLKSLPVLPQNLQYLDAHECESLETLANPL 942

Query:    61 FPKSY-ESCPPRFELNGNYNLDRNVVGGILEDALQNIQHVATARWEHMHAREKISYPEFE 119
              P +  E     F  +  Y L+++    ++  A    Q +A A  +  + R  +  P   
Sbjct:   943 TPLTVGERIHSMFIFSNCYKLNQDAQASLVGHARIKSQLMANASAKRYY-RGFVPEP-LV 1000

Query:   120 GFAILPGNEIPKWFCFQSMGSLIKLKTPP 148
             G    P  EIP WFC Q +G  +++  PP
Sbjct:  1001 GICY-PATEIPSWFCHQRLGRSLEIPLPP 1028

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2122965 AT4G19510 [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 47/149 (31%), Positives = 67/149 (44%)

Query:     2 LYLSKNNFERIPKSIIQXXXXXXXXXXXXGKLQSLPKLPCSLHKLHAHHCTALESLSG-- 59
             L LS+NN E +P+SI +             +L+SLP LP +L  L AH C +LE++S   
Sbjct:   872 LCLSRNNIETLPESIEKLYSLLLLDLKHCCRLKSLPLLPSNLQYLDAHGCGSLENVSKPL 931

Query:    60 LFPKSYESCPPRFELNGNYNLDRNVVGGILEDALQNIQHVATARWEHMHAREKISYPEFE 119
               P   E     F     + L++     I+  A    Q +A     H H +  +  P   
Sbjct:   932 TIPLVTERMHTTFIFTDCFKLNQAEKEDIVAQAQLKSQLLARTSRHHNH-KGLLLDPLVA 990

Query:   120 GFAILPGNEIPKWFCFQSMGSLIKLKTPP 148
                  PG++IP WF  Q MGSLI+    P
Sbjct:   991 --VCFPGHDIPSWFSHQKMGSLIETDLLP 1017

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2122209 AT4G36150 [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 43/150 (28%), Positives = 64/150 (42%)

Query:     2 LYLSKNNF-ERIPKSIIQXXXXXXXXXXXXGKLQSLPKLPCSLHKLHAHHCTALESLSGL 60
             L LS+NN    +   I Q              L S+P LP +L  L AH C  L++++  
Sbjct:   858 LCLSRNNMISNLQIDINQLYHLKWLDLKYCKNLTSIPLLPPNLEILDAHGCEKLKTVASP 917

Query:    61 FP--KSYESCPPRFELNGNYNLDRNVVGGILEDALQNIQHVATARWEHMHAREKISYPEF 118
                 K  E    +F      NL++     I   A +  Q    AR    +    +S   F
Sbjct:   918 MALLKLMEQVQSKFIFTNCNNLEQVAKNSITSYAQRKSQ--LDAR--RCYKEGGVSEALF 973

Query:   119 EGFAILPGNEIPKWFCFQSMGSLIKLKTPP 148
                A  PG+++P WF +Q+ GS ++LK PP
Sbjct:   974 --IACFPGSDVPSWFNYQTFGSALRLKLPP 1001

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2153328 AT5G45230 [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
 Identities = 34/119 (28%), Positives = 54/119 (45%)

Query:    33 LQSLPKLPCSLHKLHAHHCTALESLSG--LFPKSYESCPPRFELNGNYNLDRNVVGGILE 90
             L SLP LP +L  L+AH CT+L +++     P   E     F     + L++     I+ 
Sbjct:   879 LTSLPILPPNLQCLNAHGCTSLRTVASPQTLPTPTEQIHSTFIFTNCHELEQVSKNAIIS 938

Query:    91 DALQNIQHVATARWEHMHAREKISYPEFEGFAILPGNEIPKWFCFQSMGSLIKLKTPPA 149
                +  + ++  R+          Y    G    PG EIP WF  Q++GS++ L+ P A
Sbjct:   939 YVQKKSKLMSADRYS-----PDFVYKSLIG-TCFPGCEIPAWFNHQALGSVLILELPQA 991

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2827629 AT2G17050 [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 5.1e-06, P = 5.1e-06
 Identities = 41/148 (27%), Positives = 69/148 (46%)

Query:     2 LYLSKNNFERIPKSIIQXXXXXXXXXXXXGKLQSLPKLPCSLHKLHAHHCTALESLSGLF 61
             L LS NNF ++P+SI Q              L+SLP+LP SL  L+AH C  L+++    
Sbjct:   833 LDLSGNNFGKLPESIKQFRNLESLILCHCKNLESLPELPQSLEFLNAHGCVCLKNIH--- 889

Query:    62 PKSYESCPPRFELNGNYNLDRNVVGGILEDALQNIQHVATARWEHMHAREKISYPEFEGF 121
              +S++  P     +  + +  ++V  ILE        VA    +H   ++ I  P F  F
Sbjct:   890 -RSFQQFPRHCTFSNCFEISPDIVREILE------ARVAQMVIDHT-LQKLIEAPAFS-F 940

Query:   122 AILPGNEIPKWFCFQSMGSLIKLKTPPA 149
             ++ P    P +    + GS + ++  P+
Sbjct:   941 SV-PAFRDPNYIFHLNRGSSVMIRLTPS 967

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2122925 AT4G19470 [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 6.2e-06, P = 6.2e-06
 Identities = 40/149 (26%), Positives = 63/149 (42%)

Query:     2 LYLSKNNFERIPKSIIQXXXXXXXXXXXXGKLQSLPKLPCSLHKLHAHHCTALESLSGLF 61
             L LS+N+ E +P SI +              L SLP LP + + L  H C +LE++S   
Sbjct:    57 LCLSRNSIENLPGSIKKLHHLKSLYLKNCKNLISLPVLPSNQY-LDVHGCISLETVSKPM 115

Query:    62 PKSY--ESCPPRFELNGNYNLDRNVVGGILEDALQNIQHVATARWEHMHAREKISYPEFE 119
                   E     F     Y L+R+    I+       Q +A   ++  H  + +      
Sbjct:   116 TLLVIAEKTHSTFVFTDCYKLNRDAQEKIVAHTQLKSQILANRSFQLNHKVQSLELVLEP 175

Query:   120 GFAI-LPGNEIPKWFCFQSMGSLIKLKTP 147
               A+  PGN++P WF  Q +GS ++   P
Sbjct:   176 LSAVSFPGNDLPLWFRHQRIGSSMETNLP 204

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2153207 AT5G45060 [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 40/151 (26%), Positives = 68/151 (45%)

Query:     1 YLYLSKNN-FERIPKSIIQXXXXXXXXXXXXGKLQSLPKLPCSLHKLHAHHCTALESLSG 59
             YL LS+N+    +P  I Q             KL  +P+LP +L  L AH C++L++++ 
Sbjct:   818 YLCLSRNDHLIYLPAGINQVSQLTRLDLKYCTKLTYVPELPPTLQYLDAHGCSSLKNVAK 877

Query:    60 LFPKSYESCPPRFELNGNY--NLDRNVVGGILEDALQNIQHVATARWEHMHAREKISYPE 117
                +   +    +  N     NL++     I   A +  Q ++ AR  +    E +    
Sbjct:   878 PLARIMSTVQNHYTFNFTNCGNLEQAAKEEITSYAQRKCQLLSDARKHYNEGSEAL---- 933

Query:   118 FEGFAILPGNEIPKWFCFQSMGSLIKLKTPP 148
             F      PG E+P WF  +++GSL++ K  P
Sbjct:   934 FS--TCFPGCEVPSWFGHEAVGSLLQRKLLP 962

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2081810 AT3G51570 [Arabidopsis thaliana (taxid:3702)]

 Score = 87 (35.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
 Identities = 13/29 (44%), Positives = 23/29 (79%)

Query:   121 FAI-LPGNEIPKWFCFQSMGSLIKLKTPP 148
             F+I  PG+E+P WFC +++G +++L+ PP
Sbjct:   960 FSICFPGSELPSWFCHEAVGPVLELRMPP 988

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2158475 RPS4 "RESISTANT TO P. SYRINGAE 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 41/151 (27%), Positives = 66/151 (43%)

Query:     1 YLYLSKN-NFERIPKSIIQXXXXXXXXXXXXGKLQSLPKLPCSLHKLHAHHCTALESLSG 59
             YL LS+N     +P  I Q              L S+P+ P +L  L AH C++L+++S 
Sbjct:   842 YLCLSRNAKISCLPVGISQLSQLKWLDLKYCTSLTSVPEFPPNLQCLDAHGCSSLKTVSK 901

Query:    60 LFPKSY--ESCPPRFELNGNYNLDRNVVGGILEDALQNIQHVATARWEHMHAREKISYPE 117
                +    E     F      NL++     I   A +  Q ++ AR  +      +S   
Sbjct:   902 PLARIMPTEQNHSTFIFTNCENLEQAAKEEITSYAQRKCQLLSYARKRYNGGL--VSESL 959

Query:   118 FEGFAILPGNEIPKWFCFQSMGSLIKLKTPP 148
             F      PG E+P WFC +++GS +++K  P
Sbjct:   960 FS--TCFPGCEVPSWFCHETVGSELEVKLLP 988

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0004872 "receptor activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0012505 "endomembrane system" evidence=IDA

GO:0009870 "defense response signaling pathway, resistance gene-dependent" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IDA

TAIR|locus:2122199 AT4G36140 [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 2.7e-05, P = 2.7e-05
 Identities = 30/102 (29%), Positives = 53/102 (51%)

Query:    33 LQSLPKLPCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGNYNLDRNVVGGILEDA 92
             L+ LP+LP SL  L+AH C +L S+    P ++E  P  +  +  + L  +VV   +++A
Sbjct:  1220 LKELPQLPQSLEVLNAHGCVSLLSI----PSNFERLPRYYTFSNCFALSASVVNEFVKNA 1275

Query:    93 LQNIQHVATARWE---HMHAREKISYPEFEG--FAILPGNEI 129
             L N+ H+A  + E    +     +  PE +   F + PG+ +
Sbjct:  1276 LTNVAHIAREKQELNKSLALNFTVPSPESKNITFDLQPGSSV 1317

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	149
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.53
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.16
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.09
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.88
PRK15386	426	type III secretion protein GogB; Provisional	97.35
PRK15386	426	type III secretion protein GogB; Provisional	97.27
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.97
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	96.91
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	96.81
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	96.81
PLN03150	623	hypothetical protein; Provisional	96.74
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.64
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	96.46
PLN03150	623	hypothetical protein; Provisional	96.31
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	96.21
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	96.15
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	95.94
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	95.91
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	95.84
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	95.83
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.79
KOG0617	264	consensus Ras suppressor protein (contains leucine	95.79
KOG0617	264	consensus Ras suppressor protein (contains leucine	95.7
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.34
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.16
KOG0472	565	consensus Leucine-rich repeat protein [Function un	94.93
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	94.75
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	94.26
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.12
KOG0472	565	consensus Leucine-rich repeat protein [Function un	93.26
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	93.14
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	92.58
smart00370	26	LRR Leucine-rich repeats, outliers.	89.95
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.95
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	89.4
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	89.39
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	89.16
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	88.26
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	88.24
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	87.86
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	87.36
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	87.22
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	86.74
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	86.34
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	85.91
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	83.38
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	83.33
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	82.28
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	82.25
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	82.23
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	82.0
KOG4237	498	consensus Extracellular matrix protein slit, conta	81.01

>PLN03210 Resistant to P

Probab=99.53  E-value=1.5e-14  Score=133.51  Aligned_cols=121  Identities=26%  Similarity=0.321  Sum_probs=93.3

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC---CCccEEccccccccccccCCCCCC-----------CC
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSGLFPKS-----------YE   66 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~~~~~~-----------~~   66 (149)
                      +|+|++|.+..+|.+|..+++|+.|+|++|.+|+.+|..+   .+|+.+++.+|.+|+.++-.....           ..
T Consensus       850 ~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~  929 (1153)
T PLN03210        850 DLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKL  929 (1153)
T ss_pred             EeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccC
Confidence            4789999999999999999999999999999999999865   567888999999998765321100           00


Q ss_pred             CCCCeeEecCCCCCchhhhhchHHHHHHHHHHhhhHHHhhhhhcccCCCCCcceEEEccCCCCCCccccccCCceEE-Ee
Q 043750           67 SCPPRFELNGNYNLDRNVVGGILEDALQNIQHVATARWEHMHAREKISYPEFEGFAILPGNEIPKWFCFQSMGSLIK-LK  145 (149)
Q Consensus        67 ~~~~~l~~~nC~~L~~~~~~~i~~~~~~~~q~~~~~~~~~~~~~~~~~~~~f~~~~~lPGs~IP~WF~~qs~gssis-i~  145 (149)
                      .....+.|.||++|++.+..          +.-                ..+ ..+++||.+||+||.||+.|++++ |.
T Consensus       930 p~~~~l~f~nC~~L~~~a~l----------~~~----------------~~~-~~~~l~g~evp~~f~hr~~g~sl~~i~  982 (1153)
T PLN03210        930 PSTVCINFINCFNLDQEALL----------QQQ----------------SIF-KQLILSGEEVPSYFTHRTTGASLTNIP  982 (1153)
T ss_pred             CchhccccccccCCCchhhh----------ccc----------------ccc-eEEECCCccCchhccCCcccceeeeec
Confidence            11234689999999865421          100                111 468999999999999999999998 99


Q ss_pred             CCC
Q 043750          146 TPP  148 (149)
Q Consensus       146 lP~  148 (149)
                      +|+
T Consensus       983 l~~  985 (1153)
T PLN03210        983 LLH  985 (1153)
T ss_pred             cCC
Confidence            976

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=98.16  E-value=2.5e-06  Score=79.62  Aligned_cols=58  Identities=22%  Similarity=0.407  Sum_probs=38.0

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccccccccccC
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHCTALESLSG   59 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C~sL~~~~~   59 (149)
                      |+|++|++..+|.++..+++|+.|+|++|..++.+|++.  ++|+.|++.+|.++..+|.
T Consensus       616 L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~  675 (1153)
T PLN03210        616 LQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPS  675 (1153)
T ss_pred             EECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccch
Confidence            566666676777767777777777777766666666543  5666666666666655554

syringae 6; Provisional

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.09  E-value=2.3e-06  Score=49.84  Aligned_cols=38  Identities=29%  Similarity=0.399  Sum_probs=33.4

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCCC
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKL   39 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l   39 (149)
                      +|++++|+|..+|..|++|++|+.|++++|+ +.++|.+
T Consensus         5 ~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~l   42 (44)
T PF12799_consen    5 ELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISPL   42 (44)
T ss_dssp             EEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGGG
T ss_pred             EEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcCC
Confidence            4899999999999999999999999999997 8877654

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.88  E-value=8.8e-06  Score=50.02  Aligned_cols=51  Identities=33%  Similarity=0.363  Sum_probs=40.9

Q ss_pred             CEEccCCCccccch-hhcCCCCCCEEccccccccccCCCCC----CCccEEcccccc
Q 043750            1 YLYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKLP----CSLHKLHAHHCT   52 (149)
Q Consensus         1 ~L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l~----~~L~~L~~~~C~   52 (149)
                      +|++++|++..+|. .+.++++|++|++++++ ++.+|.-.    ++|+.|++.+|.
T Consensus         5 ~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    5 SLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             EEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred             EEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence            47899999999986 68999999999999887 88887532    567777777653

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.35  E-value=0.00015  Score=60.98  Aligned_cols=56  Identities=29%  Similarity=0.603  Sum_probs=39.0

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCC-CCCCccEEccccccccccccC
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPK-LPCSLHKLHAHHCTALESLSG   59 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~-l~~~L~~L~~~~C~sL~~~~~   59 (149)
                      +|++++|+++++|.   --.+|+.|.+++|.+|..+|+ +|.+|+.|++.+|..+..+|.
T Consensus        56 ~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP~  112 (426)
T PRK15386         56 RLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLPE  112 (426)
T ss_pred             EEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccccccc
Confidence            36777777777772   123577777877777777775 567777777777776666654

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.27  E-value=0.00023  Score=59.97  Aligned_cols=62  Identities=24%  Similarity=0.471  Sum_probs=51.0

Q ss_pred             hcCCCCCCEEccccccccccCCCCCCCccEEccccccccccccCCCCCCCCCCCCeeEecCCCCCch
Q 043750           16 IIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGNYNLDR   82 (149)
Q Consensus        16 i~~L~~L~~L~L~~c~~L~~lP~l~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC~~L~~   82 (149)
                      |..+.++..|++++| .|+++|.+|.+|+.|.+.+|..|+.+|....    ..+..|.+.+|.++..
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~LP----~nLe~L~Ls~Cs~L~s  109 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESLPVLPNELTEITIENCNNLTTLPGSIP----EGLEKLTVCHCPEISG  109 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCcccCCCCCCCcEEEccCCCCcccCCchhh----hhhhheEccCcccccc
Confidence            556789999999999 5999999999999999999999998886321    2456788888876643

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.97  E-value=0.0012  Score=59.61  Aligned_cols=53  Identities=26%  Similarity=0.432  Sum_probs=34.3

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCCCCCCccEEcccccccccccc
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLS   58 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~~~L~~L~~~~C~sL~~~~   58 (149)
                      |+|+++++.+||.++..  +|+.|.+.++. +..||.+|++|+.|++.++ .|+.+|
T Consensus       206 LdLs~~~LtsLP~~l~~--~L~~L~L~~N~-Lt~LP~lp~~Lk~LdLs~N-~LtsLP  258 (788)
T PRK15387        206 LNVGESGLTTLPDCLPA--HITTLVIPDNN-LTSLPALPPELRTLEVSGN-QLTSLP  258 (788)
T ss_pred             EEcCCCCCCcCCcchhc--CCCEEEccCCc-CCCCCCCCCCCcEEEecCC-ccCccc
Confidence            67777788888876653  56666666654 6666666666666666554 344444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=96.91  E-value=0.0011  Score=60.60  Aligned_cols=51  Identities=29%  Similarity=0.250  Sum_probs=32.0

Q ss_pred             EEccCCCcc-ccchhhcCCCCCCEEccccccccccCCCCC---CCccEEcccccc
Q 043750            2 LYLSKNNFE-RIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCT   52 (149)
Q Consensus         2 L~L~~~~~~-~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~   52 (149)
                      |+|++|.+. .+|.+++.+++|++|+|++|.-...+|...   .+|++|++.+|.
T Consensus       145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~  199 (968)
T PLN00113        145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ  199 (968)
T ss_pred             EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCC
Confidence            566666654 567677777777777777776444555432   456666666654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=96.81  E-value=0.0015  Score=59.64  Aligned_cols=57  Identities=25%  Similarity=0.232  Sum_probs=27.2

Q ss_pred             EEccCCCcc-ccchhhcCCCCCCEEccccccccccCCCCC---CCccEEcccccccccccc
Q 043750            2 LYLSKNNFE-RIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLS   58 (149)
Q Consensus         2 L~L~~~~~~-~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~   58 (149)
                      |+|++|.+. .+|..+.++++|+.|+|++|.-...+|...   ++|+.|++.+|.-...+|
T Consensus       504 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  564 (968)
T PLN00113        504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP  564 (968)
T ss_pred             EECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCC
Confidence            455555543 445555555555555555555333344322   345555555554333333

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=96.81  E-value=0.00073  Score=61.88  Aligned_cols=57  Identities=37%  Similarity=0.422  Sum_probs=42.1

Q ss_pred             EEccCC-CccccchhhcCCCCCCEEccccccccccCCCCC---CCccEEccccccccccccC
Q 043750            2 LYLSKN-NFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSG   59 (149)
Q Consensus         2 L~L~~~-~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~   59 (149)
                      |||++| .+..||++|++|-+|++|+|+++. +..||.-.   .+|.+|++.....++.++.
T Consensus       576 LDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~  636 (889)
T KOG4658|consen  576 LDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPG  636 (889)
T ss_pred             EECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccc
Confidence            788877 477888888888888888888877 77777654   4566777776666655533

>PLN03150 hypothetical protein; Provisional

Probab=96.74  E-value=0.0024  Score=56.41  Aligned_cols=58  Identities=28%  Similarity=0.319  Sum_probs=30.3

Q ss_pred             EEccCCCcc-ccchhhcCCCCCCEEccccccccccCCCCC---CCccEEccccccccccccC
Q 043750            2 LYLSKNNFE-RIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSG   59 (149)
Q Consensus         2 L~L~~~~~~-~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~   59 (149)
                      |+|++|++. .+|.+++.+++|+.|+|++|.--..+|+..   .+|+.|++.++.-...+|.
T Consensus       447 L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  508 (623)
T PLN03150        447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA  508 (623)
T ss_pred             EECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCCh
Confidence            455555554 555556666666666666555333455432   4555666655543334443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.64  E-value=0.0023  Score=57.88  Aligned_cols=12  Identities=33%  Similarity=0.578  Sum_probs=5.6

Q ss_pred             EEccCCCccccc
Q 043750            2 LYLSKNNFERIP   13 (149)
Q Consensus         2 L~L~~~~~~~lP   13 (149)
                      |+|++|++..+|
T Consensus       247 LdLs~N~LtsLP  258 (788)
T PRK15387        247 LEVSGNQLTSLP  258 (788)
T ss_pred             EEecCCccCccc
Confidence            444444444444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=96.46  E-value=0.0036  Score=56.53  Aligned_cols=47  Identities=23%  Similarity=0.492  Sum_probs=27.5

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCC-CCCCccEEccccc
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPK-LPCSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~-l~~~L~~L~~~~C   51 (149)
                      |+|++|++..+|..+.  .+|+.|++++|. +..+|. ++.+|+.|++.+|
T Consensus       204 L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~~~L~~L~Ls~N  251 (754)
T PRK15370        204 LILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLPDTIQEMELSIN  251 (754)
T ss_pred             EEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhhccccEEECcCC
Confidence            5667777777776543  366666666655 666664 3344555555444

>PLN03150 hypothetical protein; Provisional

Probab=96.31  E-value=0.0038  Score=55.10  Aligned_cols=74  Identities=24%  Similarity=0.220  Sum_probs=52.6

Q ss_pred             EEccCCCcc-ccchhhcCCCCCCEEccccccccccCCCCC---CCccEEccccccccccccCCCCCCCCCCCCeeEecCC
Q 043750            2 LYLSKNNFE-RIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGN   77 (149)
Q Consensus         2 L~L~~~~~~-~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC   77 (149)
                      |+|++|.+. .+|..|.+|++|+.|+|++|.--..+|...   .+|+.|++.++.--..+|....  .+..++.|++.++
T Consensus       423 L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~--~L~~L~~L~Ls~N  500 (623)
T PLN03150        423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG--QLTSLRILNLNGN  500 (623)
T ss_pred             EECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh--cCCCCCEEECcCC
Confidence            788899887 789999999999999999988445777543   6889999988764445554322  2334455555544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=96.21  E-value=0.0045  Score=46.33  Aligned_cols=46  Identities=33%  Similarity=0.363  Sum_probs=9.4

Q ss_pred             EEccCCCccccchhhc-CCCCCCEEccccccccccCCCCC--CCccEEccc
Q 043750            2 LYLSKNNFERIPKSII-QLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAH   49 (149)
Q Consensus         2 L~L~~~~~~~lP~si~-~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~   49 (149)
                      |+|+||.|..+- .++ .|.+|+.|+|++|. ++.++.++  ..|+.|++.
T Consensus        24 L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~   72 (175)
T PF14580_consen   24 LNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLS   72 (175)
T ss_dssp             -------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--
T ss_pred             cccccccccccc-chhhhhcCCCEEECCCCC-CccccCccChhhhhhcccC
Confidence            555566555543 344 35556666666555 55555544  445555443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=96.15  E-value=0.0058  Score=55.20  Aligned_cols=28  Identities=25%  Similarity=0.407  Sum_probs=12.5

Q ss_pred             EEccCCCccccchhhcCCCCCCEEcccccc
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCG   31 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~   31 (149)
                      |+|++|+|..+|.++.  ..|+.|+|++|.
T Consensus       225 L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~  252 (754)
T PRK15370        225 LYANSNQLTSIPATLP--DTIQEMELSINR  252 (754)
T ss_pred             EECCCCccccCChhhh--ccccEEECcCCc
Confidence            4555555555554332  134444444443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=95.94  E-value=0.002  Score=58.80  Aligned_cols=75  Identities=25%  Similarity=0.341  Sum_probs=45.6

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccccccccccCCCCCCCCCCCCeeEecCCCC
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGNYN   79 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC~~   79 (149)
                      |+||||+++.||+++..+..|+.|...++. +..+|++.  +.|+++|+ .|..|..+-....... ..+++|++++-..
T Consensus       412 L~LSGNkL~~Lp~tva~~~~L~tL~ahsN~-l~~fPe~~~l~qL~~lDl-S~N~L~~~~l~~~~p~-p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  412 LNLSGNKLTTLPDTVANLGRLHTLRAHSNQ-LLSFPELAQLPQLKVLDL-SCNNLSEVTLPEALPS-PNLKYLDLSGNTR  488 (1081)
T ss_pred             HhcccchhhhhhHHHHhhhhhHHHhhcCCc-eeechhhhhcCcceEEec-ccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence            677777777777777777777777776655 77777664  56778877 4555543322211110 2345666655443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=95.91  E-value=0.0044  Score=37.74  Aligned_cols=31  Identities=39%  Similarity=0.439  Sum_probs=28.0

Q ss_pred             CEEccCCCccccch-hhcCCCCCCEEcccccc
Q 043750            1 YLYLSKNNFERIPK-SIIQLSKLSCLYLSYCG   31 (149)
Q Consensus         1 ~L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~   31 (149)
                      +|++++|++..+|. .+.++++|++|++++|+
T Consensus        29 ~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen   29 TLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             EEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             EeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            48999999999976 68999999999999986

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=95.84  E-value=0.0054  Score=45.93  Aligned_cols=73  Identities=26%  Similarity=0.290  Sum_probs=28.2

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCC-C---CCCccEEccccccccccccCCCCCCCCCCCCeeEecC
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPK-L---PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNG   76 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~-l---~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~n   76 (149)
                      .|+|++|.++.+. ++..|++|+.|++++++ +.++.+ +   .++|+.|++.+.. +..+.....+..+..+..|++.+
T Consensus        46 ~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~  122 (175)
T PF14580_consen   46 VLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEG  122 (175)
T ss_dssp             EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT
T ss_pred             EEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccC
Confidence            3899999999997 59999999999999988 888864 2   3689999887542 33332222222233455666544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=95.83  E-value=0.0035  Score=57.50  Aligned_cols=50  Identities=34%  Similarity=0.501  Sum_probs=44.6

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC---CCccEEcccc
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHH   50 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~   50 (149)
                      ||+|+++.+..||.++++|.+|.+|+++++.++..+|...   ++||+|.+..
T Consensus       599 yL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  599 YLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             cccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence            7899999999999999999999999999999999998764   6788887653

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.79  E-value=0.0027  Score=31.21  Aligned_cols=19  Identities=53%  Similarity=0.723  Sum_probs=14.7

Q ss_pred             CEEccCCCccccchhhcCC
Q 043750            1 YLYLSKNNFERIPKSIIQL   19 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L   19 (149)
                      +|||++|+|..+|+++++|
T Consensus         4 ~Ldls~n~l~~ip~~~~~l   22 (22)
T PF00560_consen    4 YLDLSGNNLTSIPSSFSNL   22 (22)
T ss_dssp             EEEETSSEESEEGTTTTT-
T ss_pred             EEECCCCcCEeCChhhcCC
Confidence            4889999888898876654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=95.79  E-value=0.0015  Score=49.60  Aligned_cols=56  Identities=38%  Similarity=0.500  Sum_probs=47.6

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCCCC---CCccEEccccccccccccC
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSG   59 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~   59 (149)
                      |.|++|.|+-+|..+++|++|+.|.+.+.. |-++|...   ..|+.|++.+-. |+.+|.
T Consensus       132 lyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqgnr-l~vlpp  190 (264)
T KOG0617|consen  132 LYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQGNR-LTVLPP  190 (264)
T ss_pred             HHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhcccce-eeecCh
Confidence            468899999999999999999999999988 88888765   577888887754 777776

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=95.70  E-value=0.0021  Score=48.81  Aligned_cols=58  Identities=33%  Similarity=0.412  Sum_probs=41.2

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCCCCCCc---cEEccccccccccccCCC
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSL---HKLHAHHCTALESLSGLF   61 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~~~L---~~L~~~~C~sL~~~~~~~   61 (149)
                      |.|+.|++..+|..|..|.+|+.|++.+.. ++.+|...+++   +.|++ +...|..+|..+
T Consensus        38 LtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnv-gmnrl~~lprgf   98 (264)
T KOG0617|consen   38 LTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNV-GMNRLNILPRGF   98 (264)
T ss_pred             hhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheec-chhhhhcCcccc
Confidence            567888888888888888888888888877 88888766544   44444 344555555543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.34  E-value=0.014  Score=33.65  Aligned_cols=38  Identities=26%  Similarity=0.322  Sum_probs=27.7

Q ss_pred             CCCCEEccccccccccCCC-CC--CCccEEccccccccccccC
Q 043750           20 SKLSCLYLSYCGKLQSLPK-LP--CSLHKLHAHHCTALESLSG   59 (149)
Q Consensus        20 ~~L~~L~L~~c~~L~~lP~-l~--~~L~~L~~~~C~sL~~~~~   59 (149)
                      ++|++|+++++. +..+|. +-  ++|+.|++.++. ++.++.
T Consensus         1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP-ISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred             CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence            479999999997 889988 43  688899998884 555543

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.16  E-value=0.011  Score=27.34  Aligned_cols=17  Identities=47%  Similarity=0.501  Sum_probs=9.3

Q ss_pred             CCCCEEccccccccccCC
Q 043750           20 SKLSCLYLSYCGKLQSLP   37 (149)
Q Consensus        20 ~~L~~L~L~~c~~L~~lP   37 (149)
                      ++|+.|+|++|+ |+++|
T Consensus         1 ~~L~~L~l~~n~-L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNR-LTSLP   17 (17)
T ss_dssp             TT-SEEEETSS---SSE-
T ss_pred             CccCEEECCCCC-CCCCc
Confidence            367777887777 77665

...

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.93  E-value=0.014  Score=49.47  Aligned_cols=38  Identities=34%  Similarity=0.413  Sum_probs=21.6

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCCCC
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP   40 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~   40 (149)
                      |||..|+++++|+.|..|.+|.+|++++.. +.++|-..
T Consensus       257 LDLRdNklke~Pde~clLrsL~rLDlSNN~-is~Lp~sL  294 (565)
T KOG0472|consen  257 LDLRDNKLKEVPDEICLLRSLERLDLSNND-ISSLPYSL  294 (565)
T ss_pred             eeccccccccCchHHHHhhhhhhhcccCCc-cccCCccc
Confidence            555556666666666666556666665555 55555433

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=94.75  E-value=0.0067  Score=54.05  Aligned_cols=29  Identities=45%  Similarity=0.492  Sum_probs=14.5

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccc
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYC   30 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c   30 (149)
                      ||||+|++..||+-+..|.+|+.|.|+++
T Consensus       155 LDLS~NrLe~LPPQ~RRL~~LqtL~Ls~N  183 (1255)
T KOG0444|consen  155 LDLSNNRLEMLPPQIRRLSMLQTLKLSNN  183 (1255)
T ss_pred             hccccchhhhcCHHHHHHhhhhhhhcCCC
Confidence            44555555555555555555555555443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=94.26  E-value=0.018  Score=47.28  Aligned_cols=50  Identities=34%  Similarity=0.438  Sum_probs=34.5

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCC---CCCCccEEccccc
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPK---LPCSLHKLHAHHC   51 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~---l~~~L~~L~~~~C   51 (149)
                      +|++++|.+..+|..++.++.|+.|++++|. +..+|.   ...+|+.|++.+.
T Consensus       144 ~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls~N  196 (394)
T COG4886         144 ELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSGN  196 (394)
T ss_pred             cccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhheeccCC
Confidence            3667777777777667777777777777777 777776   3456666666554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.12  E-value=0.024  Score=27.71  Aligned_cols=18  Identities=39%  Similarity=0.399  Sum_probs=11.4

Q ss_pred             CCCEEccccccccccCCCC
Q 043750           21 KLSCLYLSYCGKLQSLPKL   39 (149)
Q Consensus        21 ~L~~L~L~~c~~L~~lP~l   39 (149)
                      +|++|+|++| +++.+|..
T Consensus         1 ~L~~Ldls~n-~l~~ip~~   18 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSS   18 (22)
T ss_dssp             TESEEEETSS-EESEEGTT
T ss_pred             CccEEECCCC-cCEeCChh
Confidence            4667777777 36666654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.26  E-value=0.029  Score=47.53  Aligned_cols=56  Identities=27%  Similarity=0.335  Sum_probs=44.4

Q ss_pred             EEccCCCccccchhhc-CCCCCCEEccccccccccCCCCC---CCccEEccccccccccccC
Q 043750            2 LYLSKNNFERIPKSII-QLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSG   59 (149)
Q Consensus         2 L~L~~~~~~~lP~si~-~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~   59 (149)
                      |+++.|.++.+|..+. +|.+|..|+|.+.+ +++.|+-.   .+|.+||+++-+ +..+|.
T Consensus       233 lh~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~-is~Lp~  292 (565)
T KOG0472|consen  233 LHVGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNND-ISSLPY  292 (565)
T ss_pred             HHhcccHHHhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccCCc-cccCCc
Confidence            4566777888888765 89999999999999 99999865   567888887754 555665

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=93.14  E-value=0.021  Score=52.41  Aligned_cols=57  Identities=32%  Similarity=0.325  Sum_probs=44.8

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC---CCccEEccccccccccccC
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSG   59 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~   59 (149)
                      |++++.|++..+|++|..+.+|+.|+..++. |..+|.-.   .+|+.|.+..|. ++.+|.
T Consensus       245 ~~dis~n~l~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~ne-l~yip~  304 (1081)
T KOG0618|consen  245 YLDISHNNLSNLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAYNE-LEYIPP  304 (1081)
T ss_pred             eeecchhhhhcchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhhh-hhhCCC
Confidence            5788999999999999999999999998877 77777654   567777776665 555554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=92.58  E-value=0.059  Score=44.31  Aligned_cols=50  Identities=28%  Similarity=0.231  Sum_probs=38.5

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccc
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHC   51 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C   51 (149)
                      +|||++|.|+.+-+|++-+++++.|+++++. +..+..+.  ++|+.|++++-
T Consensus       288 elDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~nLa~L~~L~~LDLS~N  339 (490)
T KOG1259|consen  288 ELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQNLAELPQLQLLDLSGN  339 (490)
T ss_pred             hccccccchhhhhhhhhhccceeEEeccccc-eeeehhhhhcccceEeecccc
Confidence            4789999998888889888999999998877 65555543  56777777653

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.95  E-value=0.23  Score=24.89  Aligned_cols=19  Identities=47%  Similarity=0.467  Sum_probs=14.5

Q ss_pred             CCCCCEEccccccccccCCC
Q 043750           19 LSKLSCLYLSYCGKLQSLPK   38 (149)
Q Consensus        19 L~~L~~L~L~~c~~L~~lP~   38 (149)
                      |++|++|+|+++. ++.+|.
T Consensus         1 L~~L~~L~L~~N~-l~~lp~   19 (26)
T smart00370        1 LPNLRELDLSNNQ-LSSLPP   19 (26)
T ss_pred             CCCCCEEECCCCc-CCcCCH
Confidence            4678888888886 777765

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.95  E-value=0.23  Score=24.89  Aligned_cols=19  Identities=47%  Similarity=0.467  Sum_probs=14.5

Q ss_pred             CCCCCEEccccccccccCCC
Q 043750           19 LSKLSCLYLSYCGKLQSLPK   38 (149)
Q Consensus        19 L~~L~~L~L~~c~~L~~lP~   38 (149)
                      |++|++|+|+++. ++.+|.
T Consensus         1 L~~L~~L~L~~N~-l~~lp~   19 (26)
T smart00369        1 LPNLRELDLSNNQ-LSSLPP   19 (26)
T ss_pred             CCCCCEEECCCCc-CCcCCH
Confidence            4678888888886 777765

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=89.40  E-value=0.21  Score=44.10  Aligned_cols=50  Identities=26%  Similarity=0.311  Sum_probs=42.3

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC------CCccEEccccc
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP------CSLHKLHAHHC   51 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~------~~L~~L~~~~C   51 (149)
                      .||++.|++..||-++.++++|++|-|+++. |++=|.-+      --.++|+..-|
T Consensus       215 ~lDfScNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  215 RLDFSCNKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             eeecccCceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence            4899999999999999999999999999998 98877644      12477888777

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=89.39  E-value=0.059  Score=47.73  Aligned_cols=49  Identities=37%  Similarity=0.377  Sum_probs=37.5

Q ss_pred             CEEccCCCccccch-hhcCCCCCCEEccccccccccCCCCC----CCccEEcccc
Q 043750            1 YLYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKLP----CSLHKLHAHH   50 (149)
Q Consensus         1 ~L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l~----~~L~~L~~~~   50 (149)
                      .|+|+.|++.++|+ ++..|+.|+.|+|++++ +..|-+..    ++|++|++.+
T Consensus       321 ~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~  374 (873)
T KOG4194|consen  321 ELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRS  374 (873)
T ss_pred             eEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcC
Confidence            47889999988876 58888889999998877 77776543    6777776653

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=89.16  E-value=0.15  Score=40.04  Aligned_cols=30  Identities=30%  Similarity=0.403  Sum_probs=15.9

Q ss_pred             EEccCCCcc-----ccchhhcCCCCCCEEcccccc
Q 043750            2 LYLSKNNFE-----RIPKSIIQLSKLSCLYLSYCG   31 (149)
Q Consensus         2 L~L~~~~~~-----~lP~si~~L~~L~~L~L~~c~   31 (149)
                      |+|++|++.     .++..+..+.+|+.|++++|.
T Consensus       142 L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~  176 (319)
T cd00116         142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNG  176 (319)
T ss_pred             EEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence            455555544     334445555556666665554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=88.26  E-value=0.26  Score=38.71  Aligned_cols=30  Identities=30%  Similarity=0.212  Sum_probs=13.8

Q ss_pred             EEccCCCcc-ccchhhcCCCC---CCEEcccccc
Q 043750            2 LYLSKNNFE-RIPKSIIQLSK---LSCLYLSYCG   31 (149)
Q Consensus         2 L~L~~~~~~-~lP~si~~L~~---L~~L~L~~c~   31 (149)
                      |++++|.+. ..+..+..+.+   |+.|++++|.
T Consensus        86 L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~  119 (319)
T cd00116          86 LDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG  119 (319)
T ss_pred             EEccCCCCChhHHHHHHHHhccCcccEEEeeCCc
Confidence            455555543 23333333333   5555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=88.24  E-value=0.16  Score=45.63  Aligned_cols=54  Identities=24%  Similarity=0.258  Sum_probs=37.3

Q ss_pred             ccCCCccccchhhcCCCCCCEEccccccccccCCCCC---CCccEEcccccccccccc
Q 043750            4 LSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLS   58 (149)
Q Consensus         4 L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~   58 (149)
                      +.+|+++-+|++++.+.+|+.|.|++++ |..||+-+   ..|++|+++.-+.|.-=|
T Consensus       323 aanN~LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  323 AANNKLELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             hhccccccCchhhhhhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCcCccCCC
Confidence            4566677777777777777777776555 77777643   667777777777775433

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=87.86  E-value=0.047  Score=40.07  Aligned_cols=49  Identities=22%  Similarity=0.337  Sum_probs=34.3

Q ss_pred             EEccCCCccccchhhcCC-CCCCEEccccccccccCCCCC---CCccEEccccc
Q 043750            2 LYLSKNNFERIPKSIIQL-SKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L-~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C   51 (149)
                      .+|++|.|+.+|..+... +-++.|+|++++ +..+|+..   +.|+.|++..-
T Consensus        58 i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N  110 (177)
T KOG4579|consen   58 ISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFN  110 (177)
T ss_pred             EecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccC
Confidence            467888888888776544 477788888777 77777643   56777766543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=87.36  E-value=0.3  Score=40.85  Aligned_cols=49  Identities=29%  Similarity=0.343  Sum_probs=27.5

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccc
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C   51 (149)
                      |++.+|.++.+...+..+.+|++|+|++.. +..+..+-  ..|+.|++.+.
T Consensus       100 l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l~~l~~L~~L~l~~N  150 (414)
T KOG0531|consen  100 LDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEGLSTLTLLKELNLSGN  150 (414)
T ss_pred             eeccccchhhcccchhhhhcchheeccccc-cccccchhhccchhhheeccC
Confidence            556666666665546666666666666655 55554432  34555555543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=87.22  E-value=0.23  Score=44.76  Aligned_cols=50  Identities=22%  Similarity=0.226  Sum_probs=37.0

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCCC---C--CCccEEcccccc
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKL---P--CSLHKLHAHHCT   52 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l---~--~~L~~L~~~~C~   52 (149)
                      .||+|++++..+ .+|++|++|+.|.+.+-. .+.-.++   .  .+|++||++.-.
T Consensus       177 sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  177 SLDISGTNISNL-SGISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             eeecCCCCccCc-HHHhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccc
Confidence            489999999988 789999999999887655 4333322   2  688888887543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=86.74  E-value=0.21  Score=40.97  Aligned_cols=48  Identities=33%  Similarity=0.391  Sum_probs=30.9

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCCC---CCCccEEcccc
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKL---PCSLHKLHAHH   50 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l---~~~L~~L~~~~   50 (149)
                      |+++.|++..+|.....+..|+.|.+++++ ++.+|..   +..|+.|.+.+
T Consensus       168 L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~  218 (394)
T COG4886         168 LDLSFNDLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSN  218 (394)
T ss_pred             cccCCchhhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcC
Confidence            566677777777666677777777777766 6666663   34455555544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=86.34  E-value=0.57  Score=41.76  Aligned_cols=49  Identities=29%  Similarity=0.360  Sum_probs=39.9

Q ss_pred             CEEccCCCcccc-chhhcCCCCCCEEccccccccccCCCCC---CCccEEcccc
Q 043750            1 YLYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHH   50 (149)
Q Consensus         1 ~L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~   50 (149)
                      .||+++|++..+ +..+.+|.+|+.++|.++. |..||...   ++++.|++.+
T Consensus        82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~f~~~sghl~~L~L~~  134 (873)
T KOG4194|consen   82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE-LTRIPRFGHESGHLEKLDLRH  134 (873)
T ss_pred             eeeccccccccCcHHHHhcCCcceeeeeccch-hhhcccccccccceeEEeeec
Confidence            389999998866 5678999999999999888 99999874   5687777654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=85.91  E-value=0.29  Score=44.55  Aligned_cols=68  Identities=32%  Similarity=0.519  Sum_probs=48.0

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC---CCccEEccccccccccccCCCCCCCCCCCCeeEe
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSGLFPKSYESCPPRFEL   74 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~   74 (149)
                      .|||+.|+|..+- .|..|.+|++|+|+++. |+.+|.+-   ..|+.|.+.|-. |+++...   .+++.+.+|++
T Consensus       191 ~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrnN~-l~tL~gi---e~LksL~~LDl  261 (1096)
T KOG1859|consen  191 SLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRNNA-LTTLRGI---ENLKSLYGLDL  261 (1096)
T ss_pred             hhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhhheeeeecccH-HHhhhhH---Hhhhhhhccch
Confidence            3789999998776 69999999999999988 99998874   468888776642 3333321   22334455554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=83.38  E-value=0.79  Score=36.44  Aligned_cols=63  Identities=24%  Similarity=0.120  Sum_probs=27.4

Q ss_pred             CCCCCCEEccccc--cccccCCCC---CCCccEEccccccccccccCCCCCCCCCCCCeeEecCCCCCc
Q 043750           18 QLSKLSCLYLSYC--GKLQSLPKL---PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGNYNLD   81 (149)
Q Consensus        18 ~L~~L~~L~L~~c--~~L~~lP~l---~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC~~L~   81 (149)
                      .|++|+.|.++.+  .--..++-+   .++|++|++.+-. ++.+........+.++..|++.||....
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcchhhhhcccCCccc
Confidence            4556666666655  211122211   1455665554432 1112111112233445566666666554

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=83.33  E-value=0.71  Score=23.75  Aligned_cols=19  Identities=42%  Similarity=0.487  Sum_probs=14.8

Q ss_pred             CCCEEccccccccccCCCCC
Q 043750           21 KLSCLYLSYCGKLQSLPKLP   40 (149)
Q Consensus        21 ~L~~L~L~~c~~L~~lP~l~   40 (149)
                      +|+.|+++++. |.+||++.
T Consensus         3 ~L~~L~vs~N~-Lt~LPeL~   21 (26)
T smart00364        3 SLKELNVSNNQ-LTSLPELX   21 (26)
T ss_pred             ccceeecCCCc-cccCcccc
Confidence            57788888877 88888764

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=82.28  E-value=0.23  Score=43.81  Aligned_cols=37  Identities=35%  Similarity=0.458  Sum_probs=28.0

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCCC
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKL   39 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l   39 (149)
                      |-+++|+++.+|+.|+.+..|..|+.+.|. ++++|.-
T Consensus       148 li~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq  184 (722)
T KOG0532|consen  148 LIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ  184 (722)
T ss_pred             EEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH
Confidence            456778888888888877888888888776 7766643

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=82.25  E-value=0.61  Score=38.97  Aligned_cols=50  Identities=26%  Similarity=0.165  Sum_probs=41.1

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCCC--CCCccEEcccccc
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKL--PCSLHKLHAHHCT   52 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l--~~~L~~L~~~~C~   52 (149)
                      +|+|++|.|..+.. +..|..|+.|++.++. +..+..+  ..+|+.+++.++.
T Consensus       122 ~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~-i~~~~~~~~l~~L~~l~l~~n~  173 (414)
T KOG0531|consen  122 VLDLSFNKITKLEG-LSTLTLLKELNLSGNL-ISDISGLESLKSLKLLDLSYNR  173 (414)
T ss_pred             heeccccccccccc-hhhccchhhheeccCc-chhccCCccchhhhcccCCcch
Confidence            48899999988864 8888889999999988 8888887  4678888777665

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=82.23  E-value=0.73  Score=38.08  Aligned_cols=47  Identities=23%  Similarity=0.239  Sum_probs=36.4

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCCCC---CCccEEcccc
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHH   50 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~   50 (149)
                      |+++.|.+..+-. +..|++|+.|+|++++ |.++-.+-   .+++.|.+.+
T Consensus       312 L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  312 LILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             Eeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeehhh
Confidence            7899999988765 9999999999999988 77666553   5666665543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=82.00  E-value=0.31  Score=35.82  Aligned_cols=37  Identities=24%  Similarity=0.522  Sum_probs=17.7

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCCC
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKL   39 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l   39 (149)
                      |+|++|.+..+|..+..++.|+.|+++.++ +...|..
T Consensus        82 lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~v  118 (177)
T KOG4579|consen   82 LNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRV  118 (177)
T ss_pred             hhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHH
Confidence            344444555555555555555555555444 4444433

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=81.01  E-value=0.82  Score=38.83  Aligned_cols=34  Identities=26%  Similarity=0.379  Sum_probs=26.1

Q ss_pred             EEccCCCccccch-hhcCCCCCCEEccccccccccC
Q 043750            2 LYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSL   36 (149)
Q Consensus         2 L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~l   36 (149)
                      ++|..|.|+.||+ .++.+.+|+.|+|+++. +..|
T Consensus        72 irLdqN~I~~iP~~aF~~l~~LRrLdLS~N~-Is~I  106 (498)
T KOG4237|consen   72 IRLDQNQISSIPPGAFKTLHRLRRLDLSKNN-ISFI  106 (498)
T ss_pred             EEeccCCcccCChhhccchhhhceecccccc-hhhc
Confidence            6778888888887 47888888888888765 4444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	149
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 48.8 bits (117), Expect = 9e-08
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 1   YLYLS-KNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLH 47
            L L   +N   +P  I +L++L  L L  C  L  LP L   L    
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 1   YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLP----KLPCSLHKLHAHHCTALES 56
            L +  +    +  +I  L KL  L L  C  L++ P         L +L    C+ L +
Sbjct: 210 SLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA-PLKRLILKDCSNLLT 268

Query: 57  L 57
           L
Sbjct: 269 L 269

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.2 bits (113), Expect = 3e-07
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 1   YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHA-HHCTALESLS 58
            L L++N    +P SI  L++L  L +  C +L  LP+   S            L+SL 
Sbjct: 131 TLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR 189

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 6/61 (9%)

Query: 1   YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLP----KLPCSLHKLHAHHCTALES 56
            L L       +P SI  L  L  L +     L +L      L   L +L    CTAL +
Sbjct: 187 SLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPAIHHL-PKLEELDLRGCTALRN 244

Query: 57  L 57
            
Sbjct: 245 Y 245

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.1 bits (110), Expect = 7e-07
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 1   YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLP----KLPCSLHKLHAHHCTALES 56
           ++ +       +P ++ Q + L  L L+    L++LP     L   L +L    C  L  
Sbjct: 108 HMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLN-RLRELSIRACPELTE 165

Query: 57  L 57
           L
Sbjct: 166 L 166

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 17/62 (27%), Positives = 20/62 (32%), Gaps = 6/62 (9%)

Query: 1   YLYLSKNN-FERIPKSIIQLSKLSCLYLSYCGKLQSLP----KLPCSLHKLHAHHCTALE 55
            L L         P      + L  L L  C  L +LP    +L   L KL    C  L 
Sbjct: 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT-QLEKLDLRGCVNLS 291

Query: 56  SL 57
            L
Sbjct: 292 RL 293

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.4 bits (103), Expect = 7e-06
 Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 7/61 (11%)

Query: 1   YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLP----KLPCSLHKLHAHHCTALES 56
            L L      + P    +LS L  + +     L  LP    +    L  L       L +
Sbjct: 85  ALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFA-GLETLTLARN-PLRA 141

Query: 57  L 57
           L
Sbjct: 142 L 142

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.7 bits (108), Expect = 1e-06
 Identities = 20/100 (20%), Positives = 30/100 (30%), Gaps = 23/100 (23%)

Query: 1   YLYLSKNNFERIPKSIIQLSKLSC-----------------LYLSYCGKLQSLPKLPCSL 43
           +L +  N    +P+    L  ++                  L +    +L  LP+LP SL
Sbjct: 124 HLDVDNNQLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNN-QLTFLPELPESL 182

Query: 44  HKLHAHHCTALESLSGLFPKSYESCPPRFELNGNYNLDRN 83
             L       LESL    P          E    +    N
Sbjct: 183 EALDVST-NLLESL----PAVPVRNHHSEETEIFFRCREN 217

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.8 bits (103), Expect = 5e-06
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 1   YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESL 57
            L +++N    +P+    L  L         +L +LP+LP SL  L   +   L  L
Sbjct: 84  VLEITQNALISLPELPASLEYLDACDN----RLSTLPELPASLKHLDVDNN-QLTML 135

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.0 bits (101), Expect = 9e-06
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 2   LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLSGLF 61
           L L++ N   +P ++    +++ L ++    L SLP+LP SL  L A     L +L  L 
Sbjct: 64  LQLNRLNLSSLPDNL--PPQITVLEITQN-ALISLPELPASLEYLDACDN-RLSTLPELP 119

Query: 62  PK 63
             
Sbjct: 120 AS 121

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.3 bits (107), Expect = 2e-06
 Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 1   YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLSGL 60
            L +S N    +P     L +LS         L  LP LP  L KL       L SL  L
Sbjct: 85  TLEVSGNQLTSLPVLPPGLLELSIFSNP----LTHLPALPSGLCKLWIFGN-QLTSLPVL 139

Query: 61  FP 62
            P
Sbjct: 140 PP 141

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.1 bits (104), Expect = 4e-06
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 5/57 (8%)

Query: 1   YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESL 57
            L +S N    +P    +L KL         +L SLP LP  L +L       L SL
Sbjct: 185 ELSVSDNQLASLPTLPSELYKLWAYNN----RLTSLPALPSGLKELIVSGN-RLTSL 236

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.3 bits (102), Expect = 8e-06
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 1   YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLSGL 60
            L +S N    +P    +L KL         +L SLP LP  L +L       L SL  L
Sbjct: 145 ELSVSDNQLASLPALPSELCKLWAYNN----QLTSLPMLPSGLQELSVSDN-QLASLPTL 199

Query: 61  FPK 63
             +
Sbjct: 200 PSE 202

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.4 bits (97), Expect = 3e-05
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 1   YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLSGL 60
            L++  N    +P     L +LS        +L SLP LP  L KL A++   L SL  L
Sbjct: 125 KLWIFGNQLTSLPVLPPGLQELSVSDN----QLASLPALPSELCKLWAYNN-QLTSLPML 179

Query: 61  FPK 63
              
Sbjct: 180 PSG 182

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.4 bits (97), Expect = 4e-05
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 2   LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLSGLF 61
           L + ++    +P  +   + ++ L +     L SLP LP  L  L       L SL  L 
Sbjct: 45  LNVGESGLTTLPDCL--PAHITTLVIPDN-NLTSLPALPPELRTLEVSGN-QLTSLPVLP 100

Query: 62  PK 63
           P 
Sbjct: 101 PG 102

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.0 bits (96), Expect = 5e-05
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 2   LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHC--TAL-ESLS 58
           L +S N    +P      S+L  L +S   +L SLP LP  L  L  +    T L ESL 
Sbjct: 226 LIVSGNRLTSLPVLP---SELKELMVSGN-RLTSLPMLPSGLLSLSVYRNQLTRLPESLI 281

Query: 59  GL 60
            L
Sbjct: 282 HL 283

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 38.0 bits (88), Expect = 5e-04
 Identities = 11/98 (11%), Positives = 24/98 (24%), Gaps = 1/98 (1%)

Query: 1   YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLSGL 60
            L + +N   R+P+S+I LS  + + L     L                +   +      
Sbjct: 265 SLSVYRNQLTRLPESLIHLSSETTVNLEGN-PLSERTLQALREITSAPGYSGPIIRFDMA 323

Query: 61  FPKSYESCPPRFELNGNYNLDRNVVGGILEDALQNIQH 98
              +            ++ +          D       
Sbjct: 324 GASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQ 361

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 38.0 bits (88), Expect = 6e-04
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 2   LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKL 46
           L +  NN   +P       +L  L +S   +L SLP LP  L +L
Sbjct: 66  LVIPDNNLTSLPALP---PELRTLEVSGN-QLTSLPVLPPGLLEL 106

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.7 bits (103), Expect = 7e-06
 Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 1   YLYLSKNNFERIPKSII-QLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLS 58
            + LS N  ++ P  +    S +S + LS    + S+P+        +  +   L ++ 
Sbjct: 677 TVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTID 734

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 19/105 (18%), Positives = 31/105 (29%), Gaps = 12/105 (11%)

Query: 1   YLYLSKNNFERIPKSII--QLSKLSCLYLSYCGKLQSLPKLPC---SLHKLHAHHCTALE 55
            + L  N    +        L  LS + +SY     S P  P     L      H    E
Sbjct: 732 TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAE 790

Query: 56  S--LSGLFPKSYESCPPRFELNGNYNLDRNVVGGILEDALQNIQH 98
              +   +P    +CP   +L     +  N +  + E     +  
Sbjct: 791 GNRILRQWPTGITTCPSLIQL----QIGSNDIRKVDEKLTPQLYI 831

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.0 bits (96), Expect = 6e-05
 Identities = 15/103 (14%), Positives = 32/103 (31%), Gaps = 5/103 (4%)

Query: 1   YLYLSKNNFE-RIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLSG 59
            L L+    + R+P +I QL++L  L            +L                 +  
Sbjct: 327 GLSLAGFGAKGRVPDAIGQLTELKVLSFGTH-SETVSGRLFGDEELTPDMSEERKHRIRM 385

Query: 60  LFPKSYESCPPRFE---LNGNYNLDRNVVGGILEDALQNIQHV 99
            + K +     R     L  +       +  I +D+  +++  
Sbjct: 386 HYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT 428

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 8/58 (13%)

Query: 1   YLYLSKNNFERIPKSIIQ-LSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESL 57
            L L  N  E IP+       ++  L  S+  KL+ +P +       +A     + S+
Sbjct: 599 DLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNI------FNAKSVYVMGSV 649

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 4/61 (6%)

Query: 1   YLYLSKNNF-ERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHA--HHCTALESL 57
            + L       ++P  +  L +L  L ++   +  S  +L     +L         ++  
Sbjct: 495 DVELYNCPNMTQLPDFLYDLPELQSLNIACN-RGISAAQLKADWTRLADDEDTGPKIQIF 553

Query: 58  S 58
            
Sbjct: 554 Y 554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 37.5 bits (87), Expect = 8e-04
 Identities = 14/84 (16%), Positives = 24/84 (28%), Gaps = 18/84 (21%)

Query: 1   YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLP----KLPCSLHKLHAHHCTALES 56
            L    N    +  +     KL+ L L Y  +++ +P         +  L   H      
Sbjct: 577 LLDCVHNKVRHLE-AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHN----K 630

Query: 57  LSGLFPKSYESCPPRFELNGNYNL 80
           L  +        P  F     Y +
Sbjct: 631 LKYI--------PNIFNAKSVYVM 646

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 8/76 (10%)

Query: 1   YLYLSKNNFERIPKSII--QLSKLSCLYLSYCGKLQSLPKLPCSLHKL---HAHHCTALE 55
            + L  N   ++        L  L  + LSY       P  P +   L      +    +
Sbjct: 492 SIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQ 550

Query: 56  S--LSGLFPKSYESCP 69
                  +P+    CP
Sbjct: 551 GNRTLREWPEGITLCP 566

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 8/61 (13%)

Query: 1   YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQS---LPKLPCSLHKLHAHHCTALESL 57
            + LS N+F + P   +  S L    +      Q    L + P  +       C +L  L
Sbjct: 517 GIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI-----TLCPSLTQL 571

Query: 58  S 58
            
Sbjct: 572 Q 572

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 6/60 (10%), Positives = 21/60 (35%), Gaps = 3/60 (5%)

Query: 1   YLYLSKNNF-ERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKL-HAHHCTALESLS 58
            + +       ++P  +  L ++  + ++   +  S  +L      L  A     ++ + 
Sbjct: 253 DVEVYNCPNLTKLPTFLKALPEMQLINVACN-RGISGEQLKDDWQALADAPVGEKIQIIY 311

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 41.7 bits (97), Expect = 3e-05
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 1   YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPC--SLHKLHAHHCTALESLS 58
           +L LS N    +P ++  L  L  L  S    L+++  +     L +L   +   L+  +
Sbjct: 467 HLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVDGVANLPRLQELLLCN-NRLQQSA 524

Query: 59  GLFP 62
            + P
Sbjct: 525 AIQP 528

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 1   YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLSGL 60
            +Y   N  + +P     L  L+         L  LP+LP SL  L          LS L
Sbjct: 241 TIYADNNLLKTLPDLPPSLEALNVRDN----YLTDLPELPQSLTFLDVSEN-IFSGLSEL 295

Query: 61  FPK 63
            P 
Sbjct: 296 PPN 298

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 6/62 (9%)

Query: 1   YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHC--TALESLS 58
            L  S N+   +P+    L  L     +    L++L  LP  L  L   +     L  L 
Sbjct: 95  SLVASCNSLTELPELPQSLKSLLVDNNN----LKALSDLPPLLEYLGVSNNQLEKLPELQ 150

Query: 59  GL 60
             
Sbjct: 151 NS 152

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.7 bits (96), Expect = 6e-05
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 1   YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLSGL 60
            L +S N    +P       +L  L  S+   L  +P+LP +L +LH  +   L     +
Sbjct: 321 ELNVSNNKLIELPALP---PRLERLIASFN-HLAEVPELPQNLKQLHVEYN-PLREFPDI 375

Query: 61  FPK 63
              
Sbjct: 376 PES 378

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.4 bits (95), Expect = 7e-05
 Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 1   YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHC 51
           YL  S N    +         L  L +S   KL  LP LP  L +L A   
Sbjct: 301 YLNASSNEIRSLCD---LPPSLEELNVSNN-KLIELPALPPRLERLIASFN 347

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 1   YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHH 50
            L  S N+   +P+       L  L++ Y   L+  P +P S+  L  + 
Sbjct: 341 RLIASFNHLAEVPELP---QNLKQLHVEYN-PLREFPDIPESVEDLRMNS 386

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 1   YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLSGL 60
            L +  N    +P+    L+ L             L +LP +L+ L+A     + SL  L
Sbjct: 261 ALNVRDNYLTDLPELPQSLTFLDVSENI----FSGLSELPPNLYYLNASSN-EIRSLCDL 315

Query: 61  FPK 63
            P 
Sbjct: 316 PPS 318

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 22/81 (27%)

Query: 1   YLYLSKNNFERIPKSIIQLSKLSC-------------------LYLSYCGKLQSLPKLPC 41
            + +  N+ +++P     L  ++                    +Y      L+ LP LP 
Sbjct: 157 IIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN-SLKKLPDLPL 215

Query: 42  SLHKLHAHHC--TALESLSGL 60
           SL  + A +     L  L  L
Sbjct: 216 SLESIVAGNNILEELPELQNL 236

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 1   YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPK-LPCSLHKLHAHHC 51
            L +S+N F  +P S     K+  L LS    ++ +   +P +L  L   + 
Sbjct: 391 SLDISRNTFHPMPDSCQWPEKMRFLNLSST-GIRVVKTCIPQTLEVLDVSNN 441

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 1/47 (2%)

Query: 1   YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLH 47
            L LS N    +       + ++ + L    KL  + K       L 
Sbjct: 195 TLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLE 240

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 8/67 (11%)

Query: 1   YLYLSKNNFE-RIPKSIIQLSKLSCLYLSYCGKLQ-SLPKLPC-SLHKLHAHHCTALESL 57
           +L +S N       ++I   ++L  L +S   +    +P LP  SL  L           
Sbjct: 227 HLDISGNKLSGDFSRAISTCTELKLLNISSN-QFVGPIPPLPLKSLQYLSLAEN----KF 281

Query: 58  SGLFPKS 64
           +G  P  
Sbjct: 282 TGEIPDF 288

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 8/58 (13%)

Query: 1   YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLS 58
            L L+  +   +P  ++ LS L  L LS   K ++L ++  S       +  +L  LS
Sbjct: 282 ELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISAS-------NFPSLTHLS 331

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 37.9 bits (88), Expect = 5e-04
 Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 1/47 (2%)

Query: 1   YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLH 47
            L LS N    +       + ++ + L    KL  + K       L 
Sbjct: 195 TLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLE 240

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 37.5 bits (87), Expect = 8e-04
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 1   YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHH 50
            L LS N        +  LS L  L L+    +Q L   P S+  LHA +
Sbjct: 62  LLNLSSNVLYETL-DLESLSTLRTLDLNNN-YVQELLVGP-SIETLHAAN 108

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	149
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.34
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.2
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.92
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.89
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.89
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.88
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.85
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.8
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.78
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.78
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.77
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.76
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.76
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.71
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.7
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.67
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.67
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.67
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.66
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	97.65
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.65
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.63
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.62
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	97.61
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.6
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	97.58
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.56
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	97.56
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	97.55
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.55
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.54
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.54
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.54
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	97.53
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.53
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.5
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.5
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.5
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.5
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	97.48
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.47
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.46
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	97.46
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.46
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.45
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.45
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	97.44
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.44
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.43
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	97.43
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	97.43
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.43
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.43
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	97.42
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.41
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	97.41
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.4
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	97.39
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.39
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.39
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	97.38
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.38
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.38
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	97.37
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	97.37
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.37
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.35
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.34
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.34
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	97.33
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.33
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.33
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.33
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.32
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.32
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.31
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.29
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.28
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.28
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	97.28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.28
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.28
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.27
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.27
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.24
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.24
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.24
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.23
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.22
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.22
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.2
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.19
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.17
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	97.12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.1
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.1
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.02
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	96.99
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	96.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	96.91
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	96.91
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	96.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	96.83
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	96.8
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	96.8
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	96.78
1o6v_A	466	Internalin A; bacterial infection, extracellular r	96.73
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	96.7
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	96.69
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	96.25
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	95.63
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.56
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	94.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	94.85
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	94.37
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	93.96
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	93.49
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	93.26
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	93.05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	92.81
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	92.71
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	92.38
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	91.83
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	91.36
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	89.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	89.93
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	89.21
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	87.31
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	85.84
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	80.03

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.34  E-value=9.8e-07  Score=69.77  Aligned_cols=78  Identities=24%  Similarity=0.344  Sum_probs=35.6

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCCCC---CCccEEccccccccccccCCCCCCCCCCCCeeEecCCC
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGNY   78 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC~   78 (149)
                      |+|++|.+..+|..+..+++|+.|+|++|.....+|...   .+|+.|++.+|..+..+|..+.  .+..++.|++.+|.
T Consensus       211 L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~--~l~~L~~L~L~~n~  288 (328)
T 4fcg_A          211 LKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH--RLTQLEKLDLRGCV  288 (328)
T ss_dssp             EEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGG--GCTTCCEEECTTCT
T ss_pred             EEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhh--cCCCCCEEeCCCCC
Confidence            444444444444444444555555555444444444332   3444555555544444443211  22334455555555


Q ss_pred             CCc
Q 043750           79 NLD   81 (149)
Q Consensus        79 ~L~   81 (149)
                      .+.
T Consensus       289 ~~~  291 (328)
T 4fcg_A          289 NLS  291 (328)
T ss_dssp             TCC
T ss_pred             chh
Confidence            443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.20  E-value=2.1e-06  Score=67.90  Aligned_cols=80  Identities=26%  Similarity=0.269  Sum_probs=64.4

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC---CCccEEccccccccccccCCCCCCCCCCCCeeEecCC
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGN   77 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC   77 (149)
                      +|+|++|++..+|.+++++++|+.|+|++|. +..+|...   ++|+.|++.+|.....+|..+.  .+..++.|++.+|
T Consensus       187 ~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~--~l~~L~~L~L~~n  263 (328)
T 4fcg_A          187 SLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFG--GRAPLKRLILKDC  263 (328)
T ss_dssp             EEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTT--CCCCCCEEECTTC
T ss_pred             EEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHHHhc--CCCCCCEEECCCC
Confidence            4788999999999999999999999999988 77787643   6899999999988888776432  3456778999998


Q ss_pred             CCCchh
Q 043750           78 YNLDRN   83 (149)
Q Consensus        78 ~~L~~~   83 (149)
                      ..+...
T Consensus       264 ~~~~~~  269 (328)
T 4fcg_A          264 SNLLTL  269 (328)
T ss_dssp             TTCCBC
T ss_pred             Cchhhc
Confidence            776543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.09  E-value=4e-06  Score=73.29  Aligned_cols=74  Identities=28%  Similarity=0.290  Sum_probs=56.5

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC---CCccEEccccccccccccCCCCCCCCCCCCeeEecCC
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGN   77 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC   77 (149)
                      +|+|++|.|..+|.+|+.|++|++|+|++|. +..||...   .+|++|++.++ .+..+|..+  ..+..+..|++.++
T Consensus       251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~--~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDN-MVTTLPWEF--GNLCNLQFLGVEGN  326 (727)
T ss_dssp             CCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSS-CCCCCCSST--TSCTTCCCEECTTS
T ss_pred             EEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCC-CCCccChhh--hcCCCccEEeCCCC
Confidence            4788888888888888888888888888888 77888654   57888888887 466777642  34556778888776


Q ss_pred             C
Q 043750           78 Y   78 (149)
Q Consensus        78 ~   78 (149)
                      .
T Consensus       327 ~  327 (727)
T 4b8c_D          327 P  327 (727)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.92  E-value=9e-06  Score=57.64  Aligned_cols=50  Identities=28%  Similarity=0.324  Sum_probs=31.7

Q ss_pred             EEccCCCcc--ccchhhcCCCCCCEEccccccccccCCCCC--CCccEEcccccc
Q 043750            2 LYLSKNNFE--RIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHCT   52 (149)
Q Consensus         2 L~L~~~~~~--~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C~   52 (149)
                      |+|++|.+.  .+|..+..+++|++|+|++|. +..++.+.  .+|+.|++.+|.
T Consensus        29 L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~   82 (168)
T 2ell_A           29 LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENR   82 (168)
T ss_dssp             EECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCC
T ss_pred             EECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCc
Confidence            667777766  677666777777777777666 55553332  456666666554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.89  E-value=1.3e-05  Score=66.89  Aligned_cols=56  Identities=27%  Similarity=0.325  Sum_probs=38.0

Q ss_pred             CEEccCCCccccch-hhcCCCCCCEEccccccccccCCCC----CCCccEEcccccccccccc
Q 043750            1 YLYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLS   58 (149)
Q Consensus         1 ~L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~   58 (149)
                      +|||++|+|..+|+ ++.++++|++|+|++|. ++.+|.-    ..+|++|++.++. ++.+|
T Consensus        56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~  116 (635)
T 4g8a_A           56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLA  116 (635)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEEC
T ss_pred             EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCc-CCCCC
Confidence            37778888877764 57778888888887776 7777642    2567777776653 44444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.89  E-value=1.6e-05  Score=67.78  Aligned_cols=70  Identities=26%  Similarity=0.255  Sum_probs=40.6

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCCCC---CCccEEccccccccccccCCCCCCCCCCCCeeEecCC
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGN   77 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC   77 (149)
                      |+|++|++..+|. ++.+++|+.|+|++|. +..+|...   .+|+.|++.++. ++.+|.   ...+..+..|+++++
T Consensus       446 L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~---l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          446 LHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNA-LENVDG---VANLPRLQELLLCNN  518 (567)
T ss_dssp             EECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC-CCCCGG---GTTCSSCCEEECCSS
T ss_pred             EEecCCCCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCC-CCCCcc---cCCCCCCcEEECCCC
Confidence            5667777766765 6777777777777665 66666533   456666666553 444442   122334455555554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.88  E-value=3.4e-05  Score=55.63  Aligned_cols=74  Identities=22%  Similarity=0.276  Sum_probs=54.4

Q ss_pred             CEEccCCCcccc-chhhcCCCCCCEEccccccccccCCCC----CCCccEEccccccccccccCCCCCCCCCCCCeeEec
Q 043750            1 YLYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELN   75 (149)
Q Consensus         1 ~L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~   75 (149)
                      +|+|++|.|..+ |..+.++++|++|+|++++ +..+|..    ..+|+.|++.++. ++.++.. ....+..+..|++.
T Consensus        37 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~-~~~~l~~L~~L~L~  113 (174)
T 2r9u_A           37 RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRG-AFDNLKSLTHIYLY  113 (174)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT-TTTTCTTCSEEECC
T ss_pred             EEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCc-cceeCHH-HhccccCCCEEEeC
Confidence            478999999887 5578999999999999987 8888863    2689999998764 6666652 11234456677776


Q ss_pred             CC
Q 043750           76 GN   77 (149)
Q Consensus        76 nC   77 (149)
                      +.
T Consensus       114 ~N  115 (174)
T 2r9u_A          114 NN  115 (174)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.85  E-value=4.1e-05  Score=54.88  Aligned_cols=73  Identities=23%  Similarity=0.219  Sum_probs=53.2

Q ss_pred             CEEccCCCcccc-chhhcCCCCCCEEccccccccccCCCC----CCCccEEccccccccccccCCCCCCCCCCCCeeEec
Q 043750            1 YLYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELN   75 (149)
Q Consensus         1 ~L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~   75 (149)
                      +|+|++|.|..+ |..+.++++|++|+|++++ +..+|.-    ..+|+.|++.+.. ++.++... ...+..++.|++.
T Consensus        34 ~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~  110 (170)
T 3g39_A           34 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGA-FDNLKSLTHIWLL  110 (170)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT-TTTCTTCCEEECC
T ss_pred             EEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCCc-cCEeCHHH-hcCCCCCCEEEeC
Confidence            478999999888 5568999999999999987 8888863    2678999998764 66666521 1233456677775


Q ss_pred             C
Q 043750           76 G   76 (149)
Q Consensus        76 n   76 (149)
                      +
T Consensus       111 ~  111 (170)
T 3g39_A          111 N  111 (170)
T ss_dssp             S
T ss_pred             C
Confidence            5

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.80  E-value=3.5e-05  Score=63.64  Aligned_cols=56  Identities=34%  Similarity=0.478  Sum_probs=47.8

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCCCCccEEccccccccccccC
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLSG   59 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~~~L~~L~~~~C~sL~~~~~   59 (149)
                      +|++++|.+..+| +++++++|++|++++|. +..+|..+.+|+.|++.+|. ++.+|.
T Consensus       135 ~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~lp~~~~~L~~L~L~~n~-l~~l~~  190 (454)
T 1jl5_A          135 YLGVSNNQLEKLP-ELQNSSFLKIIDVDNNS-LKKLPDLPPSLEFIAAGNNQ-LEELPE  190 (454)
T ss_dssp             EEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSSCCC
T ss_pred             EEECcCCCCCCCc-ccCCCCCCCEEECCCCc-CcccCCCcccccEEECcCCc-CCcCcc
Confidence            4789999999999 59999999999999997 88999998999999998874 555553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.78  E-value=2.1e-05  Score=58.76  Aligned_cols=59  Identities=20%  Similarity=0.290  Sum_probs=40.3

Q ss_pred             CEEccCCCccccch-hhcCCCCCCEEccccccccccCCCC----CCCccEEccccccccccccC
Q 043750            1 YLYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLSG   59 (149)
Q Consensus         1 ~L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~~   59 (149)
                      +|+|++|++..+|. .+.++++|++|++++++.+..+|..    ..+|+.|++.+|..++.++.
T Consensus        35 ~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~   98 (239)
T 2xwt_C           35 TLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP   98 (239)
T ss_dssp             EEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred             EEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence            36777777777766 5777777777777777667666642    25677777777666666653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.78  E-value=8.9e-06  Score=56.55  Aligned_cols=75  Identities=23%  Similarity=0.232  Sum_probs=50.5

Q ss_pred             CEEccCCCcc--ccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccccccccccCCCCCCCCCCCCeeEecC
Q 043750            1 YLYLSKNNFE--RIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNG   76 (149)
Q Consensus         1 ~L~L~~~~~~--~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~n   76 (149)
                      +|++++|.+.  .+|..+..+++|++|++++|. +..++.+.  .+|+.|++.+|.--..+|....  ....+..|++++
T Consensus        21 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~ls~   97 (149)
T 2je0_A           21 ELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSIANLPKLNKLKKLELSDNRVSGGLEVLAE--KCPNLTHLNLSG   97 (149)
T ss_dssp             EEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCCTTCCCCTTCCEEECCSSCCCSCTHHHHH--HCTTCCEEECTT
T ss_pred             EEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCchhhhcCCCCCEEECCCCcccchHHHHhh--hCCCCCEEECCC
Confidence            3788888887  888888889999999998886 77774443  6788888887753222433211  123455676666


Q ss_pred             CC
Q 043750           77 NY   78 (149)
Q Consensus        77 C~   78 (149)
                      |.
T Consensus        98 N~   99 (149)
T 2je0_A           98 NK   99 (149)
T ss_dssp             SC
T ss_pred             Cc
Confidence            53

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.77  E-value=4.1e-05  Score=63.21  Aligned_cols=71  Identities=27%  Similarity=0.423  Sum_probs=53.2

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCCCCccEEccccccccccccCCCCCCCCCCCCeeEecCC
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGN   77 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC   77 (149)
                      +|++++|.+..+| .++++++|+.|++++|. +..+|..+.+|+.|++.+|. ++.+|..   .....++.+++.+|
T Consensus       177 ~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n~-l~~lp~~---~~l~~L~~L~l~~N  247 (454)
T 1jl5_A          177 FIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAGNNI-LEELPEL---QNLPFLTTIYADNN  247 (454)
T ss_dssp             EEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSC-CSSCCCC---TTCTTCCEEECCSS
T ss_pred             EEECcCCcCCcCc-cccCCCCCCEEECCCCc-CCcCCCCcCcccEEECcCCc-CCccccc---CCCCCCCEEECCCC
Confidence            4788889888888 58999999999999988 88899988899999998883 5566642   12233445555443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.76  E-value=2.5e-05  Score=55.95  Aligned_cols=73  Identities=16%  Similarity=0.148  Sum_probs=38.6

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCCC----CCCccEEccccccccccccCCCCCCCCCCCCeeEecCC
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGN   77 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC   77 (149)
                      |+|++|.+..+ ..+..+++|++|+|++|. +..+|.-    .++|+.|++.++. +..++..........+..+++.++
T Consensus        47 L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N  123 (176)
T 1a9n_A           47 IDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRN  123 (176)
T ss_dssp             EECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSS
T ss_pred             EECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCC
Confidence            56666666655 346666666666666665 5565532    1566666666553 344443111112234456666554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.76  E-value=7.4e-05  Score=54.64  Aligned_cols=55  Identities=25%  Similarity=0.355  Sum_probs=37.5

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCCC----CCCccEEcccccccccccc
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLS   58 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~   58 (149)
                      |+|++|.|..+|..+.++++|+.|+|+++. +..++.-    ..+|+.|++.++. ++.++
T Consensus        36 L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~   94 (193)
T 2wfh_A           36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNR-LRCIP   94 (193)
T ss_dssp             EECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCC
T ss_pred             EECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCc-cCEeC
Confidence            677777777777777788888888887776 6666642    1567777776653 44433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.73  E-value=3.1e-05  Score=67.73  Aligned_cols=73  Identities=27%  Similarity=0.212  Sum_probs=57.2

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC---CCccEEccccccccccccCCCCCCCCCCCCeeEecCC
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGN   77 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC   77 (149)
                      .|+|++|.+..+|..+..+++|++|+|++|. +..||...   .+|++|++.++. |..+|..+.  .+..+..|++.+|
T Consensus       228 ~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~--~l~~L~~L~L~~N  303 (727)
T 4b8c_D          228 ALDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELG--SCFQLKYFYFFDN  303 (727)
T ss_dssp             EEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGG--GGTTCSEEECCSS
T ss_pred             EEECCCCCCCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhhc--CCCCCCEEECCCC
Confidence            3899999999999999999999999999997 88998743   689999999886 667776432  2334555555544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.71  E-value=3.9e-05  Score=65.33  Aligned_cols=73  Identities=22%  Similarity=0.203  Sum_probs=57.9

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccccccccc--cCCCCCCCCCCCCeeEecC
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHCTALESL--SGLFPKSYESCPPRFELNG   76 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C~sL~~~--~~~~~~~~~~~~~~l~~~n   76 (149)
                      +|+|++|.+..+|.++++|++|+.|+|+++. +..+|.+.  ++|+.|++.++. +..+  |..+  ..+..+..|++.+
T Consensus       467 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~l~~l~~L~~L~Ls~N~-l~~~~~p~~l--~~l~~L~~L~L~~  542 (567)
T 1dce_A          467 HLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVDGVANLPRLQELLLCNNR-LQQSAAIQPL--VSCPRLVLLNLQG  542 (567)
T ss_dssp             EEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSSC-CCSSSTTGGG--GGCTTCCEEECTT
T ss_pred             EeecCcccccccchhhhcCCCCCEEECCCCC-CCCCcccCCCCCCcEEECCCCC-CCCCCCcHHH--hcCCCCCEEEecC
Confidence            4899999999999999999999999999998 88899553  789999998874 6655  4322  2344567777766


Q ss_pred             C
Q 043750           77 N   77 (149)
Q Consensus        77 C   77 (149)
                      +
T Consensus       543 N  543 (567)
T 1dce_A          543 N  543 (567)
T ss_dssp             S
T ss_pred             C
Confidence            4

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.70  E-value=5.5e-05  Score=63.14  Aligned_cols=56  Identities=38%  Similarity=0.325  Sum_probs=37.3

Q ss_pred             CEEccCCCccccch-hhcCCCCCCEEccccccccccCCCC----CCCccEEcccccccccccc
Q 043750            1 YLYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLS   58 (149)
Q Consensus         1 ~L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~   58 (149)
                      +|+|++|+|..+|+ .+.+|++|++|+|++|+ ++.+|.-    ..+|++|++.+|. ++.++
T Consensus        80 ~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~  140 (635)
T 4g8a_A           80 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN-LASLE  140 (635)
T ss_dssp             EEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEECTTSC-CCCST
T ss_pred             EEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEECCCCc-CCCCC
Confidence            46777777777765 47777777777777776 7777642    2567777776653 44443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.70  E-value=7.2e-05  Score=57.21  Aligned_cols=48  Identities=27%  Similarity=0.395  Sum_probs=29.9

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCCCC-CCccEEccccc
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP-CSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~-~~L~~L~~~~C   51 (149)
                      |+|++|.+..+|. +.++++|+.|+|++|+ +..+|.+. .+|+.|++.+|
T Consensus        68 L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~~~~L~~L~L~~N  116 (263)
T 1xeu_A           68 LHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNLNGIPSACLSRLFLDNN  116 (263)
T ss_dssp             EECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCCTTCCCSSCCEEECCSS
T ss_pred             EECCCCccCCChh-hccCCCCCEEECCCCc-cCCcCccccCcccEEEccCC
Confidence            5666666666665 6666666666666665 66655544 45666666655

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.67  E-value=9.2e-05  Score=55.08  Aligned_cols=49  Identities=29%  Similarity=0.325  Sum_probs=25.9

Q ss_pred             EEccCCCcccc-chhhcCCCCCCEEccccccccccCCCC----CCCccEEccccc
Q 043750            2 LYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C   51 (149)
                      |+|++|.+..+ |..+.++++|++|+|+++. +..+|..    ..+|+.|++.++
T Consensus        61 L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N  114 (220)
T 2v9t_B           61 IDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNAN  114 (220)
T ss_dssp             EECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCCEEECCCC
Confidence            45555555544 4455555555555555554 5555542    145555555544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.67  E-value=3.1e-05  Score=53.72  Aligned_cols=74  Identities=22%  Similarity=0.177  Sum_probs=52.0

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEcccccccccc-CCCC---CCCccEEccccccccccccCCCCCCCCCCCCeeEecC
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQS-LPKL---PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNG   76 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~-lP~l---~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~n   76 (149)
                      +|+|++|.+..+ ..+..+++|++|+|++|. +.. +|..   ..+|+.|++.+|. ++.++..........++.+++++
T Consensus        46 ~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~  122 (149)
T 2je0_A           46 FLSTINVGLTSI-ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFN  122 (149)
T ss_dssp             EEECTTSCCCCC-TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTT
T ss_pred             EEECcCCCCCCc-hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcC
Confidence            478888888888 668889999999999888 665 6665   3688899988875 55443211122334566788777


Q ss_pred             C
Q 043750           77 N   77 (149)
Q Consensus        77 C   77 (149)
                      |
T Consensus       123 N  123 (149)
T 2je0_A          123 C  123 (149)
T ss_dssp             C
T ss_pred             C
Confidence            6

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.67  E-value=8.8e-05  Score=55.46  Aligned_cols=30  Identities=33%  Similarity=0.506  Sum_probs=11.9

Q ss_pred             EEccCCCcccc-chhhcCCCCCCEEcccccc
Q 043750            2 LYLSKNNFERI-PKSIIQLSKLSCLYLSYCG   31 (149)
Q Consensus         2 L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~   31 (149)
                      |+|++|.+..+ |..+..+++|+.|+|+++.
T Consensus        45 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~   75 (229)
T 3e6j_A           45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQ   75 (229)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEcCCCccCccCHHHhhCccCCcEEECCCCC
Confidence            34444444333 2233444444444444433

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.66  E-value=2.6e-05  Score=55.20  Aligned_cols=74  Identities=24%  Similarity=0.256  Sum_probs=56.2

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEcccccccccc-CCCCC---CCccEEccccccccccccCCCCCCCCCCCCeeEecC
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQS-LPKLP---CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNG   76 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~-lP~l~---~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~n   76 (149)
                      +|+|++|.+..+ ..+..+++|++|+|++|. +.. +|...   ++|+.|++.+| .++.++.......+..+..|++.+
T Consensus        53 ~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~  129 (168)
T 2ell_A           53 FLSLINVGLISV-SNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFN  129 (168)
T ss_dssp             EEEEESSCCCCC-SSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCS
T ss_pred             EEeCcCCCCCCh-hhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeC
Confidence            488999999988 779999999999999998 666 66553   68999999988 466665322223345677888877


Q ss_pred             C
Q 043750           77 N   77 (149)
Q Consensus        77 C   77 (149)
                      |
T Consensus       130 N  130 (168)
T 2ell_A          130 C  130 (168)
T ss_dssp             S
T ss_pred             C
Confidence            6

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=97.65  E-value=8.9e-05  Score=53.96  Aligned_cols=73  Identities=11%  Similarity=0.105  Sum_probs=50.9

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccccccccccCCCCCCCCCCCCeeEecCC
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGN   77 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC   77 (149)
                      +|++++|.+..+| .+..+++|++|++++| .+..++.+.  ++|+.|++.+|.--...+..+  ..+..++.|++++|
T Consensus        48 ~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~Ls~n  122 (197)
T 4ezg_A           48 YITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNL--SGLTSLTLLDISHS  122 (197)
T ss_dssp             EEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCC--TTCTTCCEEECCSS
T ss_pred             EEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCccCcccChhh--cCCCCCCEEEecCC
Confidence            4788999999998 6999999999999998 477776554  688889888865222222221  22344566766665

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.65  E-value=5.2e-05  Score=62.58  Aligned_cols=50  Identities=20%  Similarity=0.155  Sum_probs=28.8

Q ss_pred             EEccCCCcccc-chhhcCCCCCCEEccccccccccCCCC-CCCccEEcccccc
Q 043750            2 LYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSLPKL-PCSLHKLHAHHCT   52 (149)
Q Consensus         2 L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~lP~l-~~~L~~L~~~~C~   52 (149)
                      |+|++|++..+ |..+.++++|++|+|+++. +..+|.. ..+|++|++.+|.
T Consensus        50 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~l~~L~~L~L~~N~  101 (520)
T 2z7x_B           50 LIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKISCHPTVNLKHLDLSFNA  101 (520)
T ss_dssp             EECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEECCCCCCCSEEECCSSC
T ss_pred             EecCCCccCCcChHHhhcccCCCEEecCCCc-eeecCccccCCccEEeccCCc
Confidence            55666666554 4456666666666666654 5555543 2456666666554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.63  E-value=0.00013  Score=54.46  Aligned_cols=73  Identities=25%  Similarity=0.292  Sum_probs=54.6

Q ss_pred             CEEccCCCccccchh-hcCCCCCCEEccccccccccCCCC----CCCccEEccccccccccccCCCCCCCCCCCCeeEec
Q 043750            1 YLYLSKNNFERIPKS-IIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELN   75 (149)
Q Consensus         1 ~L~L~~~~~~~lP~s-i~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~   75 (149)
                      +|+|++|.+..+|.. +..+++|+.|+|+++. +..+|..    ..+|+.|++.++. ++.+|...  ..+..++.|++.
T Consensus        68 ~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~--~~l~~L~~L~L~  143 (229)
T 3e6j_A           68 ELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNK-LTELPRGI--ERLTHLTHLALD  143 (229)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTG--GGCTTCSEEECC
T ss_pred             EEECCCCCCCCcChhhcccCCCcCEEECCCCc-CCccChhHhCcchhhCeEeccCCc-ccccCccc--ccCCCCCEEECC
Confidence            488999999999865 5899999999999997 8888753    2689999998764 66776533  233455667665


Q ss_pred             CC
Q 043750           76 GN   77 (149)
Q Consensus        76 nC   77 (149)
                      ++
T Consensus       144 ~N  145 (229)
T 3e6j_A          144 QN  145 (229)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.62  E-value=0.00013  Score=53.03  Aligned_cols=34  Identities=29%  Similarity=0.356  Sum_probs=17.2

Q ss_pred             EEccCCCccccchh--hcCCCCCCEEccccccccccC
Q 043750            2 LYLSKNNFERIPKS--IIQLSKLSCLYLSYCGKLQSL   36 (149)
Q Consensus         2 L~L~~~~~~~lP~s--i~~L~~L~~L~L~~c~~L~~l   36 (149)
                      |+|++|++..+|..  +..+++|++|+|+++. +..+
T Consensus        34 L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~   69 (192)
T 1w8a_A           34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGI   69 (192)
T ss_dssp             EECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCB
T ss_pred             EECCCCcCCccCCccccccCCCCCEEECCCCC-CCCc
Confidence            45555555555432  4555555555555554 4433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=97.61  E-value=9.8e-05  Score=60.30  Aligned_cols=30  Identities=27%  Similarity=0.237  Sum_probs=12.9

Q ss_pred             EEccCCCccccc-hhhcCCCCCCEEcccccc
Q 043750            2 LYLSKNNFERIP-KSIIQLSKLSCLYLSYCG   31 (149)
Q Consensus         2 L~L~~~~~~~lP-~si~~L~~L~~L~L~~c~   31 (149)
                      |+|++|.+..++ ..+.++++|++|+|+++.
T Consensus       104 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  134 (452)
T 3zyi_A          104 LQLGRNSIRQIEVGAFNGLASLNTLELFDNW  134 (452)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCccCCcChhhccCcccCCEEECCCCc
Confidence            444444444333 234444444444444443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.61  E-value=6.9e-05  Score=55.94  Aligned_cols=77  Identities=17%  Similarity=0.175  Sum_probs=53.6

Q ss_pred             CEEccCCC-ccccch-hhcCCCCCCEEccccccccccCCCC----CCCccEEccccccccccccCCCCCCCCCCCC---e
Q 043750            1 YLYLSKNN-FERIPK-SIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLSGLFPKSYESCPP---R   71 (149)
Q Consensus         1 ~L~L~~~~-~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~---~   71 (149)
                      +|+|++|+ +..+|. .+.++++|++|+|++|.+++.+|..    ..+|+.|++.++. ++.+|....   ...+.   .
T Consensus        59 ~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~~~~---l~~L~~L~~  134 (239)
T 2xwt_C           59 RIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPDLTK---VYSTDIFFI  134 (239)
T ss_dssp             EEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCCCTT---CCBCCSEEE
T ss_pred             EEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Ccccccccc---ccccccccE
Confidence            47889997 888876 6889999999999986668888853    2678889888775 555665222   22333   6


Q ss_pred             eEecCCCCCc
Q 043750           72 FELNGNYNLD   81 (149)
Q Consensus        72 l~~~nC~~L~   81 (149)
                      +++.++.++.
T Consensus       135 L~l~~N~~l~  144 (239)
T 2xwt_C          135 LEITDNPYMT  144 (239)
T ss_dssp             EEEESCTTCC
T ss_pred             EECCCCcchh
Confidence            6666664443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.60  E-value=0.00019  Score=51.17  Aligned_cols=49  Identities=33%  Similarity=0.388  Sum_probs=24.6

Q ss_pred             EEccCCCccccchh-hcCCCCCCEEccccccccccCCCC----CCCccEEccccc
Q 043750            2 LYLSKNNFERIPKS-IIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~lP~s-i~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C   51 (149)
                      |++++|++..+|.. +..+++|++|+|+++. +..+|..    ..+|+.|++.++
T Consensus        33 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCC
Confidence            45555555555443 3555555555555554 4554431    134555555443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=97.58  E-value=0.00011  Score=57.35  Aligned_cols=48  Identities=25%  Similarity=0.364  Sum_probs=24.0

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccc
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C   51 (149)
                      |++++|.+..+|. +.++++|++|++++|. +..+|.+.  .+|+.|++.+|
T Consensus        71 L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~L~l~~n  120 (347)
T 4fmz_A           71 LNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDISALQNLTNLRELYLNED  120 (347)
T ss_dssp             EECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEECTTS
T ss_pred             EEccCCccccchh-hhcCCcCCEEEccCCc-ccCchHHcCCCcCCEEECcCC
Confidence            4555555555554 5555555555555553 44444332  34555555444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.56  E-value=0.00011  Score=61.63  Aligned_cols=49  Identities=37%  Similarity=0.314  Sum_probs=23.0

Q ss_pred             EEccCCCcccc-chhhcCCCCCCEEccccccccccC-CCCC---CCccEEccccc
Q 043750            2 LYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSL-PKLP---CSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~l-P~l~---~~L~~L~~~~C   51 (149)
                      |+|++|.+..+ |..+.++++|++|+|++|. +..+ |+..   .+|++|++.+|
T Consensus        61 L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n  114 (606)
T 3vq2_A           61 LDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVET  114 (606)
T ss_dssp             EECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEECTTS
T ss_pred             EeCCCCcccccCHHHhhchhhcCEeECCCCc-ccccChhhcCCcccCCEEEccCC
Confidence            45555555544 3345555555555555554 3333 3321   34444444443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=97.56  E-value=9.6e-05  Score=53.77  Aligned_cols=74  Identities=9%  Similarity=0.006  Sum_probs=52.1

Q ss_pred             CEEccCCCccc-cchhhcCCCCCCEEcccccccccc-CCCC---CCCccEEccccccccccccCCCCCCCCCCCCeeEec
Q 043750            1 YLYLSKNNFER-IPKSIIQLSKLSCLYLSYCGKLQS-LPKL---PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELN   75 (149)
Q Consensus         1 ~L~L~~~~~~~-lP~si~~L~~L~~L~L~~c~~L~~-lP~l---~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~   75 (149)
                      +|++++|.+.. .|..+..+++|++|+|++|. +.. .|..   .++|+.|++.+|..+..++...   ....++.|++.
T Consensus        92 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~---~l~~L~~L~l~  167 (197)
T 4ezg_A           92 RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA-HDDSILTKINTLPKVNSIDLSYNGAITDIMPLK---TLPELKSLNIQ  167 (197)
T ss_dssp             EEEEECTTCBGGGSCCCTTCTTCCEEECCSSB-CBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGG---GCSSCCEEECT
T ss_pred             EEEeECCccCcccChhhcCCCCCCEEEecCCc-cCcHhHHHHhhCCCCCEEEccCCCCccccHhhc---CCCCCCEEECC
Confidence            47888888875 67788899999999999887 543 3321   2678899998887666665322   23446677777


Q ss_pred             CCC
Q 043750           76 GNY   78 (149)
Q Consensus        76 nC~   78 (149)
                      +|.
T Consensus       168 ~n~  170 (197)
T 4ezg_A          168 FDG  170 (197)
T ss_dssp             TBC
T ss_pred             CCC
Confidence            663

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=97.55  E-value=0.00012  Score=57.16  Aligned_cols=48  Identities=23%  Similarity=0.292  Sum_probs=23.4

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccc
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C   51 (149)
                      |+|++|.+..+|. +..+++|++|+|++|. +..+|.+.  .+|+.|++.+|
T Consensus        68 L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n  117 (308)
T 1h6u_A           68 LELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTST  117 (308)
T ss_dssp             EECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECTTS
T ss_pred             EEccCCcCCCChh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEECCCC
Confidence            4555555555544 5555555555555554 44444332  34455544443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.55  E-value=0.00017  Score=55.90  Aligned_cols=49  Identities=31%  Similarity=0.303  Sum_probs=24.6

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCCC----CCCccEEccccc
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C   51 (149)
                      |+|++|.+..+|..+..+++|++|+|+++. +..+|.-    ..+|+.|++.++
T Consensus        82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N  134 (290)
T 1p9a_G           82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGN  134 (290)
T ss_dssp             EECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTS
T ss_pred             EECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCC
Confidence            455555555555555555555555555554 4444421    134555554443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.54  E-value=0.00013  Score=60.52  Aligned_cols=49  Identities=29%  Similarity=0.402  Sum_probs=25.9

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCCC-CCCccEEccccc
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKL-PCSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l-~~~L~~L~~~~C   51 (149)
                      |+|++|++..+|..+..+++|++|+|++|. +..+|.. +.+|+.|++.+|
T Consensus       392 L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N  441 (549)
T 2z81_A          392 LDISRNTFHPMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNN  441 (549)
T ss_dssp             EECTTCCCCCCCSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSS
T ss_pred             EECCCCCCccCChhhcccccccEEECCCCC-cccccchhcCCceEEECCCC
Confidence            555555555555555555555555555555 5444432 234444444443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.54  E-value=0.00012  Score=61.38  Aligned_cols=30  Identities=37%  Similarity=0.358  Sum_probs=14.5

Q ss_pred             EEccCCCccccc-hhhcCCCCCCEEcccccc
Q 043750            2 LYLSKNNFERIP-KSIIQLSKLSCLYLSYCG   31 (149)
Q Consensus         2 L~L~~~~~~~lP-~si~~L~~L~~L~L~~c~   31 (149)
                      |+|++|.+..+| ..+.++++|++|+|++|.
T Consensus        57 L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   87 (562)
T 3a79_B           57 LSLSQNSISELRMPDISFLSELRVLRLSHNR   87 (562)
T ss_dssp             EECCSSCCCCCCGGGTTTCTTCCEEECCSCC
T ss_pred             EECCCCCccccChhhhccCCCccEEECCCCC
Confidence            445555554443 244555555555555443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.54  E-value=0.00015  Score=55.50  Aligned_cols=56  Identities=21%  Similarity=0.301  Sum_probs=45.6

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccccccccccC
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHCTALESLSG   59 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C~sL~~~~~   59 (149)
                      +|++++|++..+| .+..+++|+.|+|++|. +..+|.+.  .+|+.|++.++. ++.++.
T Consensus        45 ~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~L~~N~-l~~l~~  102 (263)
T 1xeu_A           45 NFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSPLKDLTKLEELSVNRNR-LKNLNG  102 (263)
T ss_dssp             EEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSSC-CSCCTT
T ss_pred             EEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChhhccCCCCCEEECCCCc-cCCcCc
Confidence            4789999999998 69999999999999997 88888643  689999998874 555443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=97.53  E-value=8.4e-05  Score=58.61  Aligned_cols=55  Identities=25%  Similarity=0.259  Sum_probs=35.0

Q ss_pred             EEccCCCccccchh-hcCCCCCCEEccccccccccCCC--C---CCCccEEccccccccccc
Q 043750            2 LYLSKNNFERIPKS-IIQLSKLSCLYLSYCGKLQSLPK--L---PCSLHKLHAHHCTALESL   57 (149)
Q Consensus         2 L~L~~~~~~~lP~s-i~~L~~L~~L~L~~c~~L~~lP~--l---~~~L~~L~~~~C~sL~~~   57 (149)
                      |+|++|.+..+|.. ++++++|++|+|+++. +..+|.  .   ..+|+.|++.+|..++.+
T Consensus       105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~  165 (353)
T 2z80_A          105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKI  165 (353)
T ss_dssp             EECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred             EECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCcccccc
Confidence            66777777766665 6677777777777665 666665  2   256677777666544444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.53  E-value=0.00014  Score=59.09  Aligned_cols=29  Identities=31%  Similarity=0.304  Sum_probs=11.9

Q ss_pred             EEccCCCccccc-hhhcCCCCCCEEccccc
Q 043750            2 LYLSKNNFERIP-KSIIQLSKLSCLYLSYC   30 (149)
Q Consensus         2 L~L~~~~~~~lP-~si~~L~~L~~L~L~~c   30 (149)
                      |+|++|.+..++ ..+.++++|++|+|++|
T Consensus        93 L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           93 LQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             EECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             EECCCCcCCccChhhccCCccCCEEECCCC
Confidence            344444444333 23444444444444443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.50  E-value=0.00013  Score=62.86  Aligned_cols=48  Identities=23%  Similarity=0.414  Sum_probs=27.0

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCCCCCCccEEcccccc
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCT   52 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~~~L~~L~~~~C~   52 (149)
                      |++++|++..+|.++.  ++|+.|+|++|. +..+|..+++|+.|++.+|.
T Consensus        45 L~ls~n~L~~lp~~l~--~~L~~L~L~~N~-l~~lp~~l~~L~~L~Ls~N~   92 (622)
T 3g06_A           45 LNVGESGLTTLPDCLP--AHITTLVIPDNN-LTSLPALPPELRTLEVSGNQ   92 (622)
T ss_dssp             EECCSSCCSCCCSCCC--TTCSEEEECSCC-CSCCCCCCTTCCEEEECSCC
T ss_pred             EEecCCCcCccChhhC--CCCcEEEecCCC-CCCCCCcCCCCCEEEcCCCc
Confidence            5556666666665444  455555555554 55555555555555555543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.50  E-value=0.00014  Score=62.71  Aligned_cols=69  Identities=32%  Similarity=0.371  Sum_probs=31.8

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCCCCCCccEEccccccccccccCCCCCCCCCCCCeeEecCC
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGN   77 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC   77 (149)
                      |+|++|.+..+|   ..+++|+.|+|++|. +..+|..+.+|+.|++.+| .++.+|..+  ..+..+..|++.++
T Consensus       226 L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~-L~~lp~~~~~L~~L~Ls~N-~L~~lp~~l--~~l~~L~~L~L~~N  294 (622)
T 3g06_A          226 LIVSGNRLTSLP---VLPSELKELMVSGNR-LTSLPMLPSGLLSLSVYRN-QLTRLPESL--IHLSSETTVNLEGN  294 (622)
T ss_dssp             EECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCCSCCGGG--GGSCTTCEEECCSC
T ss_pred             EEccCCccCcCC---CCCCcCcEEECCCCC-CCcCCcccccCcEEeCCCC-CCCcCCHHH--hhccccCEEEecCC
Confidence            344444444444   233445555555553 5555554455555555554 244444321  12334455555554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.50  E-value=0.00027  Score=51.50  Aligned_cols=35  Identities=40%  Similarity=0.593  Sum_probs=15.2

Q ss_pred             EEccCCCccccchh-hcCCCCCCEEccccccccccCC
Q 043750            2 LYLSKNNFERIPKS-IIQLSKLSCLYLSYCGKLQSLP   37 (149)
Q Consensus         2 L~L~~~~~~~lP~s-i~~L~~L~~L~L~~c~~L~~lP   37 (149)
                      |+|++|++..+|.. +..+++|++|+|+++. +..+|
T Consensus        33 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~   68 (208)
T 2o6s_A           33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLP   68 (208)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCC
T ss_pred             EEcCCCccCcCChhhhcccccCcEEECCCCc-cCccC
Confidence            44444444444432 3444444444444443 44443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.50  E-value=0.0003  Score=50.10  Aligned_cols=74  Identities=30%  Similarity=0.332  Sum_probs=53.1

Q ss_pred             CEEccCCCccccchh-hcCCCCCCEEccccccccccCCCC----CCCccEEccccccccccccCCCCCCCCCCCCeeEec
Q 043750            1 YLYLSKNNFERIPKS-IIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELN   75 (149)
Q Consensus         1 ~L~L~~~~~~~lP~s-i~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~   75 (149)
                      +|+|++|.+..+|.. +..+++|+.|+|+++. +..+|.-    ..+|+.|++.++ .++.++... ......+..+++.
T Consensus        56 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L~~L~l~  132 (177)
T 2o6r_A           56 KLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTN-QLKSVPDGI-FDRLTSLQKIWLH  132 (177)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECC
T ss_pred             EEECCCCcceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCC-cceEeCHHH-hcCCcccCEEEec
Confidence            478899999888765 5889999999999887 7777753    268889998887 466666521 1123456677776


Q ss_pred             CC
Q 043750           76 GN   77 (149)
Q Consensus        76 nC   77 (149)
                      ++
T Consensus       133 ~N  134 (177)
T 2o6r_A          133 TN  134 (177)
T ss_dssp             SS
T ss_pred             CC
Confidence            65

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=97.48  E-value=0.00026  Score=53.98  Aligned_cols=30  Identities=27%  Similarity=0.377  Sum_probs=12.1

Q ss_pred             EEccCCCccccchh-hcCCCCCCEEcccccc
Q 043750            2 LYLSKNNFERIPKS-IIQLSKLSCLYLSYCG   31 (149)
Q Consensus         2 L~L~~~~~~~lP~s-i~~L~~L~~L~L~~c~   31 (149)
                      |+|++|.+..+|.. +..+++|++|+|++|.
T Consensus        90 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  120 (272)
T 3rfs_A           90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQ  120 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EECCCCccCccChhHhcCCcCCCEEECCCCc
Confidence            34444444433332 2444444444444443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.47  E-value=0.00031  Score=51.21  Aligned_cols=49  Identities=35%  Similarity=0.480  Sum_probs=29.4

Q ss_pred             EEccCCCccccchh-hcCCCCCCEEccccccccccCCCC----CCCccEEccccc
Q 043750            2 LYLSKNNFERIPKS-IIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~lP~s-i~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C   51 (149)
                      |+|++|++..+|.. +..+++|++|+|+++. +..+|..    ..+|+.|++.++
T Consensus        57 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N  110 (208)
T 2o6s_A           57 LYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTN  110 (208)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEEEcCCC
Confidence            56666666666554 4666666666666665 5555542    145666666554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.46  E-value=0.0003  Score=53.46  Aligned_cols=49  Identities=39%  Similarity=0.507  Sum_probs=22.9

Q ss_pred             EEccCCCccccchh-hcCCCCCCEEccccccccccCCCC----CCCccEEccccc
Q 043750            2 LYLSKNNFERIPKS-IIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~lP~s-i~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C   51 (149)
                      |+|++|.+..+|.. +..+++|++|+|++|. +..+|.-    ..+|+.|++.++
T Consensus       114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n  167 (270)
T 2o6q_A          114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNN  167 (270)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCC
Confidence            45555555544432 4455555555555554 4444431    134444444443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=97.46  E-value=0.00029  Score=53.69  Aligned_cols=49  Identities=33%  Similarity=0.412  Sum_probs=29.9

Q ss_pred             EEccCCCccccchh-hcCCCCCCEEccccccccccCCCC----CCCccEEccccc
Q 043750            2 LYLSKNNFERIPKS-IIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~lP~s-i~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C   51 (149)
                      |+|++|++..+|.. +..+++|++|+|++|. +..+|.-    ..+|+.|++.+|
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n  167 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYN  167 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCC
Confidence            56666666666554 5666667777776664 5555541    245666666655

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.46  E-value=0.0003  Score=52.90  Aligned_cols=14  Identities=36%  Similarity=0.394  Sum_probs=5.5

Q ss_pred             cCCCCCCEEccccc
Q 043750           17 IQLSKLSCLYLSYC   30 (149)
Q Consensus        17 ~~L~~L~~L~L~~c   30 (149)
                      ..+++|++|+|+++
T Consensus       104 ~~l~~L~~L~L~~N  117 (251)
T 3m19_A          104 DHLTQLDKLYLGGN  117 (251)
T ss_dssp             TTCTTCCEEECCSS
T ss_pred             cccCCCCEEEcCCC
Confidence            33344444444333

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.45  E-value=0.00025  Score=52.69  Aligned_cols=15  Identities=13%  Similarity=0.036  Sum_probs=5.8

Q ss_pred             hcCCCCCCEEccccc
Q 043750           16 IIQLSKLSCLYLSYC   30 (149)
Q Consensus        16 i~~L~~L~~L~L~~c   30 (149)
                      +.++++|+.|+|+++
T Consensus        77 ~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           77 FEGASGVNEILLTSN   91 (220)
T ss_dssp             TTTCTTCCEEECCSS
T ss_pred             hCCCCCCCEEECCCC
Confidence            333333333333333

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.45  E-value=0.00035  Score=50.97  Aligned_cols=73  Identities=22%  Similarity=0.248  Sum_probs=54.5

Q ss_pred             CEEccCCCccccch-hhcCCCCCCEEccccccccccCCCC----CCCccEEccccccccccccCCCCCCCCCCCCeeEec
Q 043750            1 YLYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELN   75 (149)
Q Consensus         1 ~L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~   75 (149)
                      +|+|++|.+..++. .+..+++|+.|+|+++. +..+|.-    ..+|+.|++.++. ++.++... ...+..+..+++.
T Consensus        58 ~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~  134 (193)
T 2wfh_A           58 LIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGA-FNDLSALSHLAIG  134 (193)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTT-TTTCTTCCEEECC
T ss_pred             EEECCCCcCCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhh-hhcCccccEEEeC
Confidence            48999999998875 59999999999999998 8888753    2689999998865 66666521 1123445667665


Q ss_pred             C
Q 043750           76 G   76 (149)
Q Consensus        76 n   76 (149)
                      +
T Consensus       135 ~  135 (193)
T 2wfh_A          135 A  135 (193)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=97.44  E-value=0.00018  Score=62.82  Aligned_cols=77  Identities=21%  Similarity=0.153  Sum_probs=59.8

Q ss_pred             CEEccCCCcc-ccchhhcCCCCCCEEccccccccccCCCCC---CCccEEccccccccccccCCCCCCCCCCCCeeEecC
Q 043750            1 YLYLSKNNFE-RIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNG   76 (149)
Q Consensus         1 ~L~L~~~~~~-~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~n   76 (149)
                      +|||++|++. .+|.+|++++.|+.|+|+++.--..+|+..   .+|+.|++.++.--..+|....  .+..++.|++++
T Consensus       636 ~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~--~l~~L~~L~ls~  713 (768)
T 3rgz_A          636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS--ALTMLTEIDLSN  713 (768)
T ss_dssp             EEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG--GCCCCSEEECCS
T ss_pred             EEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh--CCCCCCEEECcC
Confidence            3899999987 889999999999999999998555888754   6789999998875556665332  344567888887


Q ss_pred             CCC
Q 043750           77 NYN   79 (149)
Q Consensus        77 C~~   79 (149)
                      +.=
T Consensus       714 N~l  716 (768)
T 3rgz_A          714 NNL  716 (768)
T ss_dssp             SEE
T ss_pred             Ccc
Confidence            643

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.44  E-value=0.00035  Score=52.58  Aligned_cols=74  Identities=28%  Similarity=0.293  Sum_probs=56.0

Q ss_pred             CEEccCCCccccchh-hcCCCCCCEEccccccccccCCCC----CCCccEEccccccccccccCCCCCCCCCCCCeeEec
Q 043750            1 YLYLSKNNFERIPKS-IIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELN   75 (149)
Q Consensus         1 ~L~L~~~~~~~lP~s-i~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~   75 (149)
                      +|+|++|++..+|.. +..+++|+.|+|+++. +..+|.-    ..+|+.|++.++. ++.++.. ....+..++.+++.
T Consensus       111 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~l~  187 (251)
T 3m19_A          111 KLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHG-AFDRLGKLQTITLF  187 (251)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTT-TTTTCTTCCEEECC
T ss_pred             EEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCc-CCccCHH-HHhCCCCCCEEEee
Confidence            488999999999876 5899999999999997 8888862    2689999999874 5555541 11233456778876


Q ss_pred             CC
Q 043750           76 GN   77 (149)
Q Consensus        76 nC   77 (149)
                      ++
T Consensus       188 ~N  189 (251)
T 3m19_A          188 GN  189 (251)
T ss_dssp             SC
T ss_pred             CC
Confidence            64

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.43  E-value=0.00023  Score=60.91  Aligned_cols=46  Identities=22%  Similarity=0.373  Sum_probs=24.7

Q ss_pred             EEccCCCccccchhhc--CCCCCCEEccccccccccCCCCC---CCccEEcc
Q 043750            2 LYLSKNNFERIPKSII--QLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHA   48 (149)
Q Consensus         2 L~L~~~~~~~lP~si~--~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~   48 (149)
                      |+|++|++..+|..+.  .+++|+.|+|++|. +..+|...   .+|+.|++
T Consensus       493 L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L  543 (636)
T 4eco_A          493 IDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGI  543 (636)
T ss_dssp             EECCSSCCCBCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEEC
T ss_pred             EECcCCcCCccChhhhhccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEEC
Confidence            4555555555555554  55555555555555 44455432   34555555

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=97.43  E-value=0.00021  Score=55.84  Aligned_cols=57  Identities=25%  Similarity=0.374  Sum_probs=41.4

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccccccccccC
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHCTALESLSG   59 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C~sL~~~~~   59 (149)
                      +|+|++|.+..+| .+..+++|++|++++|. +..+|.+.  .+|+.|++.+|..+..++.
T Consensus        92 ~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~-i~~~~~~~~l~~L~~L~l~~n~~~~~~~~  150 (347)
T 4fmz_A           92 NLYIGTNKITDIS-ALQNLTNLRELYLNEDN-ISDISPLANLTKMYSLNLGANHNLSDLSP  150 (347)
T ss_dssp             EEECCSSCCCCCG-GGTTCTTCSEEECTTSC-CCCCGGGTTCTTCCEEECTTCTTCCCCGG
T ss_pred             EEEccCCcccCch-HHcCCCcCCEEECcCCc-ccCchhhccCCceeEEECCCCCCcccccc
Confidence            4778888888776 48888888888888877 77776543  6778888887765554443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=97.43  E-value=0.0002  Score=55.79  Aligned_cols=29  Identities=28%  Similarity=0.342  Sum_probs=11.8

Q ss_pred             EEccCCCccccchhhcCCCCCCEEcccccc
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCG   31 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~   31 (149)
                      |+|++|.+..+| .+..+++|+.|+|++|.
T Consensus        90 L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~  118 (308)
T 1h6u_A           90 LELSGNPLKNVS-AIAGLQSIKTLDLTSTQ  118 (308)
T ss_dssp             EECCSCCCSCCG-GGTTCTTCCEEECTTSC
T ss_pred             EEccCCcCCCch-hhcCCCCCCEEECCCCC
Confidence            344444444433 24444444444444433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.43  E-value=0.00027  Score=59.24  Aligned_cols=50  Identities=32%  Similarity=0.396  Sum_probs=27.4

Q ss_pred             EEccCCCcccc-chhhcCCCCCCEEccccccccccCCCCC----CCccEEcccccc
Q 043750            2 LYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSLPKLP----CSLHKLHAHHCT   52 (149)
Q Consensus         2 L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~lP~l~----~~L~~L~~~~C~   52 (149)
                      |+|++|.+..+ |.+++++++|++|+|++|. +..+|...    .+|+.|++.+|.
T Consensus        85 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~  139 (606)
T 3vq2_A           85 LILTGNPIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNF  139 (606)
T ss_dssp             EECTTCCCCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSC
T ss_pred             eECCCCcccccChhhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCc
Confidence            55666665554 5556666666666666655 44444221    455566665553

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.43  E-value=0.00034  Score=50.78  Aligned_cols=72  Identities=18%  Similarity=0.236  Sum_probs=50.9

Q ss_pred             CEEccCCCcccc-chhhcCCCCCCEEccccccccccCCCC----CCCccEEccccccccccc-cCCCCCCCCCCCCeeEe
Q 043750            1 YLYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESL-SGLFPKSYESCPPRFEL   74 (149)
Q Consensus         1 ~L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~-~~~~~~~~~~~~~~l~~   74 (149)
                      +|+|++|.+..+ |..+.++++|++|+|+++. +..+|.-    ..+|+.|++.++. +..+ |..+  ..+..+..+++
T Consensus        58 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~--~~l~~L~~L~L  133 (192)
T 1w8a_A           58 KLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSF--EHLNSLTSLNL  133 (192)
T ss_dssp             EEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSC-CCEECTTSS--TTCTTCCEEEC
T ss_pred             EEECCCCCCCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHh--hcCCCCCEEEe
Confidence            478999999877 6789999999999999988 7777653    2678899988875 4433 3322  22344567776


Q ss_pred             cC
Q 043750           75 NG   76 (149)
Q Consensus        75 ~n   76 (149)
                      .+
T Consensus       134 ~~  135 (192)
T 1w8a_A          134 AS  135 (192)
T ss_dssp             TT
T ss_pred             CC
Confidence            55

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=97.42  E-value=0.00023  Score=57.50  Aligned_cols=75  Identities=20%  Similarity=0.114  Sum_probs=48.0

Q ss_pred             CEEccCCCcccc-chhhcCCCCCCEEccccccccccCCC-C---CCCccEEccccccccccccCCCCCCCCCCCCeeEec
Q 043750            1 YLYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSLPK-L---PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELN   75 (149)
Q Consensus         1 ~L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~lP~-l---~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~   75 (149)
                      +|+|++|.+..+ |..+.++++|++|+|++|.....+|. .   ..+|++|++.+|.-....|..+.  .+..++.|++.
T Consensus        34 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~  111 (455)
T 3v47_A           34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN--GLANLEVLTLT  111 (455)
T ss_dssp             EEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTT--TCTTCCEEECT
T ss_pred             EEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhcc--CcccCCEEeCC
Confidence            478888888876 66788888899999888874445543 2   26788888887753222233221  23345566665


Q ss_pred             CC
Q 043750           76 GN   77 (149)
Q Consensus        76 nC   77 (149)
                      +|
T Consensus       112 ~n  113 (455)
T 3v47_A          112 QC  113 (455)
T ss_dssp             TS
T ss_pred             CC
Confidence            55

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.41  E-value=0.0003  Score=52.25  Aligned_cols=57  Identities=25%  Similarity=0.258  Sum_probs=43.7

Q ss_pred             CEEccCCCccccch-hhcCCCCCCEEccccccccccC-CCCC---CCccEEccccccccccccC
Q 043750            1 YLYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSL-PKLP---CSLHKLHAHHCTALESLSG   59 (149)
Q Consensus         1 ~L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~l-P~l~---~~L~~L~~~~C~sL~~~~~   59 (149)
                      +|+|++|++..+|. .+..+++|+.|+|+++. +..+ |+..   .+|+.|++.++. ++.++.
T Consensus        36 ~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~   97 (220)
T 2v9t_B           36 EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNK-ITELPK   97 (220)
T ss_dssp             EEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSSC-CCCCCT
T ss_pred             EEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCCc-CCccCH
Confidence            37889999988876 68899999999999988 6666 4432   678899988764 555554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=97.41  E-value=0.0002  Score=56.36  Aligned_cols=77  Identities=23%  Similarity=0.148  Sum_probs=37.4

Q ss_pred             EEccCCCccccc-hhhcCCCCCCEEccccccccccCCCC----CCCccEEccccccccccccCCCCCCCCCCCCeeEecC
Q 043750            2 LYLSKNNFERIP-KSIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNG   76 (149)
Q Consensus         2 L~L~~~~~~~lP-~si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~n   76 (149)
                      |+|++|.+..++ ..+.++++|++|+|++|. +..+|.-    ..+|+.|++.++. ++.++..........++.|++.+
T Consensus        81 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~  158 (353)
T 2z80_A           81 LVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGN  158 (353)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEE
T ss_pred             EECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCC
Confidence            455555555443 345555555555555554 4444431    2456666665542 33444311112233455666666


Q ss_pred             CCCC
Q 043750           77 NYNL   80 (149)
Q Consensus        77 C~~L   80 (149)
                      |..+
T Consensus       159 n~~~  162 (353)
T 2z80_A          159 MDTF  162 (353)
T ss_dssp             SSSC
T ss_pred             Cccc
Confidence            6433

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.40  E-value=0.00018  Score=56.89  Aligned_cols=59  Identities=15%  Similarity=0.146  Sum_probs=43.5

Q ss_pred             CEEccCCCccccch-hhcCCCCCCEEccccccccccCCCCC----CCccEEccccccccccccC
Q 043750            1 YLYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKLP----CSLHKLHAHHCTALESLSG   59 (149)
Q Consensus         1 ~L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l~----~~L~~L~~~~C~sL~~~~~   59 (149)
                      +|+|++|+|+.||. .+.+|++|++|+|++|+-++.+|.-.    .+++.+...++..++.++.
T Consensus        34 ~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~   97 (350)
T 4ay9_X           34 ELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP   97 (350)
T ss_dssp             EEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred             EEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc
Confidence            48899999999987 47999999999999998667777532    3455555555666666643

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=97.39  E-value=0.00035  Score=56.98  Aligned_cols=49  Identities=24%  Similarity=0.304  Sum_probs=26.2

Q ss_pred             EEccCCCcccc-chhhcCCCCCCEEccccccccccCCC-C---CCCccEEccccc
Q 043750            2 LYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSLPK-L---PCSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~lP~-l---~~~L~~L~~~~C   51 (149)
                      |+|++|++..+ |..+.++++|+.|+|+++. +..++. .   ..+|+.|++.++
T Consensus        80 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n  133 (452)
T 3zyi_A           80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDN  133 (452)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred             EECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCC
Confidence            56666666554 3456666666666666654 444442 1   134555555444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.39  E-value=0.00047  Score=51.16  Aligned_cols=72  Identities=17%  Similarity=0.206  Sum_probs=52.7

Q ss_pred             CEEccCCCccccchh-hcCCCCCCEEccccccccccCC-CCC---CCccEEccccccccccc-cCCCCCCCCCCCCeeEe
Q 043750            1 YLYLSKNNFERIPKS-IIQLSKLSCLYLSYCGKLQSLP-KLP---CSLHKLHAHHCTALESL-SGLFPKSYESCPPRFEL   74 (149)
Q Consensus         1 ~L~L~~~~~~~lP~s-i~~L~~L~~L~L~~c~~L~~lP-~l~---~~L~~L~~~~C~sL~~~-~~~~~~~~~~~~~~l~~   74 (149)
                      +|+|++|.+..+|.. +..+++|++|+|+++. +..++ ...   .+|+.|++.++. ++.+ |..+  ..+..+..+++
T Consensus        85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~--~~l~~L~~L~L  160 (220)
T 2v70_A           85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAF--DTLHSLSTLNL  160 (220)
T ss_dssp             EEECCSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTT--TTCTTCCEEEC
T ss_pred             EEECCCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCc-CCEECHHHh--cCCCCCCEEEe
Confidence            489999999988765 8999999999999998 77774 332   689999998874 5555 3322  23345567776


Q ss_pred             cC
Q 043750           75 NG   76 (149)
Q Consensus        75 ~n   76 (149)
                      .+
T Consensus       161 ~~  162 (220)
T 2v70_A          161 LA  162 (220)
T ss_dssp             CS
T ss_pred             cC
Confidence            54

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.39  E-value=0.00037  Score=53.97  Aligned_cols=57  Identities=30%  Similarity=0.355  Sum_probs=37.8

Q ss_pred             CEEccCCCccccch-hhcCCCCCCEEccccccccccCCCC----CCCccEEccccccccccccC
Q 043750            1 YLYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLSG   59 (149)
Q Consensus         1 ~L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~~   59 (149)
                      +|+|++|.+..+|. .+.++++|++|+|+++. +..+|.-    ..+|+.|++.++. ++.+|.
T Consensus       104 ~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~  165 (290)
T 1p9a_G          104 VLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNN-LTELPA  165 (290)
T ss_dssp             EEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CSCCCT
T ss_pred             EEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCc-CCccCH
Confidence            36777777777763 57777788888887776 6666652    2567777776653 444443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=97.38  E-value=0.00038  Score=53.12  Aligned_cols=29  Identities=24%  Similarity=0.450  Sum_probs=12.5

Q ss_pred             EEccCCCccccch-hhcCCCCCCEEccccc
Q 043750            2 LYLSKNNFERIPK-SIIQLSKLSCLYLSYC   30 (149)
Q Consensus         2 L~L~~~~~~~lP~-si~~L~~L~~L~L~~c   30 (149)
                      |+|++|++..+|. .+..+++|++|+|+++
T Consensus        37 L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n   66 (285)
T 1ozn_A           37 IFLHGNRISHVPAASFRACRNLTILWLHSN   66 (285)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEeeCCcCCccCHHHcccCCCCCEEECCCC
Confidence            3444444444432 3444444444444444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.38  E-value=0.00021  Score=58.99  Aligned_cols=71  Identities=27%  Similarity=0.222  Sum_probs=50.8

Q ss_pred             CEEccCCCccccc-hhhcCCCCCCEEccccccccccC-CCCC---CCccEEccccccccccccCCCCCCCCCCCCeeEec
Q 043750            1 YLYLSKNNFERIP-KSIIQLSKLSCLYLSYCGKLQSL-PKLP---CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELN   75 (149)
Q Consensus         1 ~L~L~~~~~~~lP-~si~~L~~L~~L~L~~c~~L~~l-P~l~---~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~   75 (149)
                      +|+|++|.+..+| ..+.++++|++|+|++|+ +..+ |+..   .+|++|++.++. ++.+|..    .+..++.|++.
T Consensus        25 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~----~l~~L~~L~L~   98 (520)
T 2z7x_B           25 ILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHNK-LVKISCH----PTVNLKHLDLS   98 (520)
T ss_dssp             EEECCSSCCCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSSC-CCEEECC----CCCCCSEEECC
T ss_pred             EEECCCCcccccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCCc-eeecCcc----ccCCccEEecc
Confidence            4788999988776 578999999999999997 6666 4332   688999998873 5666653    23344555555


Q ss_pred             CC
Q 043750           76 GN   77 (149)
Q Consensus        76 nC   77 (149)
                      +|
T Consensus        99 ~N  100 (520)
T 2z7x_B           99 FN  100 (520)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.38  E-value=0.0003  Score=53.42  Aligned_cols=49  Identities=37%  Similarity=0.326  Sum_probs=26.0

Q ss_pred             EEccCCCccccch-hhcCCCCCCEEccccccccccCCC-C---CCCccEEccccc
Q 043750            2 LYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPK-L---PCSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~-l---~~~L~~L~~~~C   51 (149)
                      |+|++|.+..+|. .+.++++|++|+|+++. +..++. .   ..+|+.|++.++
T Consensus        57 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n  110 (276)
T 2z62_A           57 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVET  110 (276)
T ss_dssp             EECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTS
T ss_pred             EECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEECCCC
Confidence            5666666655544 45666666666666655 444431 1   134555555443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=97.37  E-value=0.00042  Score=53.33  Aligned_cols=49  Identities=33%  Similarity=0.383  Sum_probs=23.0

Q ss_pred             EEccCCCcccc-chhhcCCCCCCEEccccccccccCCCCC----CCccEEccccc
Q 043750            2 LYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSLPKLP----CSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~lP~l~----~~L~~L~~~~C   51 (149)
                      |+|++|.+..+ |..+..+++|+.|+|++|. +..+|...    .+|+.|++.++
T Consensus       180 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N  233 (306)
T 2z66_A          180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLN  233 (306)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTS
T ss_pred             EECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCC
Confidence            44555554443 3344555555555555544 44443321    34555555544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=97.37  E-value=0.00026  Score=58.74  Aligned_cols=30  Identities=33%  Similarity=0.298  Sum_probs=14.4

Q ss_pred             EEccCCCccccc-hhhcCCCCCCEEcccccc
Q 043750            2 LYLSKNNFERIP-KSIIQLSKLSCLYLSYCG   31 (149)
Q Consensus         2 L~L~~~~~~~lP-~si~~L~~L~~L~L~~c~   31 (149)
                      |+|++|++..+| ..+.++++|++|+|+++.
T Consensus        57 L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~   87 (570)
T 2z63_A           57 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (570)
T ss_dssp             EECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EECCCCcCCccCcccccCchhCCEEeCcCCc
Confidence            445555554443 234455555555555444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.37  E-value=0.00018  Score=56.19  Aligned_cols=50  Identities=34%  Similarity=0.431  Sum_probs=24.3

Q ss_pred             EEccCCCcc---ccchhhcCCCCCCEEccccccccc-cCCCCC---CCccEEccccc
Q 043750            2 LYLSKNNFE---RIPKSIIQLSKLSCLYLSYCGKLQ-SLPKLP---CSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~---~lP~si~~L~~L~~L~L~~c~~L~-~lP~l~---~~L~~L~~~~C   51 (149)
                      |+|++|++.   .+|..+.++++|++|+|+++.++. .+|...   .+|++|++.++
T Consensus        55 L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n  111 (313)
T 1ogq_A           55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT  111 (313)
T ss_dssp             EEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE
T ss_pred             EECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCC
Confidence            455555554   355555555555555555422232 344322   34555555444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.35  E-value=0.00028  Score=60.25  Aligned_cols=46  Identities=26%  Similarity=0.372  Sum_probs=22.6

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCCCCCCccEEccccc
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~~~L~~L~~~~C   51 (149)
                      |+|++|++..+|.   .+++|+.|+|++|. +..+|..+.+|+.|++.+|
T Consensus       125 L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N  170 (571)
T 3cvr_A          125 LDVDNNQLTMLPE---LPALLEYINADNNQ-LTMLPELPTSLEVLSVRNN  170 (571)
T ss_dssp             EECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS
T ss_pred             EECCCCcCCCCCC---cCccccEEeCCCCc-cCcCCCcCCCcCEEECCCC
Confidence            4444555444444   34455555555544 4445544445555555444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.34  E-value=0.0003  Score=54.45  Aligned_cols=48  Identities=25%  Similarity=0.365  Sum_probs=23.4

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccc
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C   51 (149)
                      |+|++|.+..+|. +..+++|++|+|++|. +..++.+.  .+|+.|++.+|
T Consensus        95 L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~-i~~~~~l~~l~~L~~L~l~~n  144 (291)
T 1h6t_A           95 LFLDENKVKDLSS-LKDLKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNN  144 (291)
T ss_dssp             EECCSSCCCCGGG-GTTCTTCCEEECTTSC-CCCCGGGGGCTTCCEEECCSS
T ss_pred             EECCCCcCCCChh-hccCCCCCEEECCCCc-CCCChhhcCCCCCCEEEccCC
Confidence            4555555555443 5555555555555554 44444332  34444444443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.34  E-value=0.00028  Score=54.63  Aligned_cols=48  Identities=27%  Similarity=0.430  Sum_probs=33.3

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccc
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C   51 (149)
                      |+|++|.+..+|. +.++++|++|+|++|. +..+|.+.  .+|+.|++.+|
T Consensus        73 L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n  122 (291)
T 1h6t_A           73 LFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHN  122 (291)
T ss_dssp             EECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTS
T ss_pred             EEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChhhccCCCCCEEECCCC
Confidence            6677777777666 7777777777777776 66666543  56777777665

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.34  E-value=0.00024  Score=58.18  Aligned_cols=48  Identities=19%  Similarity=0.298  Sum_probs=26.0

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccc
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C   51 (149)
                      |+|++|.+..+|. +.++++|++|++++|. +..+|.+.  .+|+.|++.+|
T Consensus        73 L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n  122 (466)
T 1o6v_A           73 INFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADITPLANLTNLTGLTLFNN  122 (466)
T ss_dssp             EECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSS
T ss_pred             EECCCCccCCchh-hhccccCCEEECCCCc-cccChhhcCCCCCCEEECCCC
Confidence            5555665555555 5555566666665554 44444321  45555555554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=97.33  E-value=0.00022  Score=54.89  Aligned_cols=49  Identities=22%  Similarity=0.270  Sum_probs=28.7

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCC--C---CCCccEEccccc
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPK--L---PCSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~--l---~~~L~~L~~~~C   51 (149)
                      |+|++|.+..+|..+..+++|++|+++++. +..+|.  .   ..+|+.|++.+|
T Consensus        83 L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n  136 (306)
T 2z66_A           83 LDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHT  136 (306)
T ss_dssp             EECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTS
T ss_pred             EECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCC
Confidence            566666666666666666666666666665 555543  1   145556655554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.33  E-value=0.00039  Score=54.49  Aligned_cols=72  Identities=24%  Similarity=0.252  Sum_probs=44.6

Q ss_pred             CEEccC-CCccccch-hhcCCCCCCEEccccccccccCCCC----CCCccEEccccccccccccCCCCCCCCCCCCeeEe
Q 043750            1 YLYLSK-NNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFEL   74 (149)
Q Consensus         1 ~L~L~~-~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~   74 (149)
                      +|+|++ |.|..+|. .+.+|++|+.|+|+++. |..+|.-    ..+|+.|++.+. .|..+|...-  ....+..|++
T Consensus        35 ~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~--~~~~L~~l~l  110 (347)
T 2ifg_A           35 ELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTV--QGLSLQELVL  110 (347)
T ss_dssp             EEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTT--CSCCCCEEEC
T ss_pred             EEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHc--ccCCceEEEe
Confidence            367775 77777764 57778888888888775 7766642    256777777764 3666654211  1112556666


Q ss_pred             cC
Q 043750           75 NG   76 (149)
Q Consensus        75 ~n   76 (149)
                      .+
T Consensus       111 ~~  112 (347)
T 2ifg_A          111 SG  112 (347)
T ss_dssp             CS
T ss_pred             eC
Confidence            44

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.33  E-value=0.00015  Score=57.84  Aligned_cols=49  Identities=29%  Similarity=0.378  Sum_probs=27.0

Q ss_pred             EEccCCCcccc-chhhcCCCCCCEEccccccccccCCCCC---CCccEEccccc
Q 043750            2 LYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C   51 (149)
                      |+|++|.+..+ |..+.++++|+.|+|++|+ +..+|...   ++|+.|++.+|
T Consensus       253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n  305 (390)
T 3o6n_A          253 VDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHN  305 (390)
T ss_dssp             EECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSS
T ss_pred             EECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCC
Confidence            55555555543 4555666666666666554 55555432   45566665555

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.33  E-value=0.00035  Score=58.43  Aligned_cols=75  Identities=19%  Similarity=0.090  Sum_probs=55.7

Q ss_pred             CEEccCCCcccc-chhhcCCCCCCEEccccccccccCCCC-CCCccEEccccccccccccCCCCCCCCCCCCeeEecCC
Q 043750            1 YLYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSLPKL-PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGN   77 (149)
Q Consensus         1 ~L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~lP~l-~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC   77 (149)
                      +|+|++|.+..+ |..+.++++|++|+|+++. +..+|.. ..+|+.|++.++. ++.++.......+..++.|++.++
T Consensus        80 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n  156 (562)
T 3a79_B           80 VLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCCPMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAA  156 (562)
T ss_dssp             EEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSCCCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECS
T ss_pred             EEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCccccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCC
Confidence            488999999887 6679999999999999988 8888875 3689999998876 555543222223455677877764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.32  E-value=0.00044  Score=53.87  Aligned_cols=72  Identities=24%  Similarity=0.313  Sum_probs=47.4

Q ss_pred             EEccCCCcccc-chhhcCCCCCCEEccccccccccCCC--C--CCCccEEccccccccccccCCCCCCCCCCCCeeEecC
Q 043750            2 LYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSLPK--L--PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNG   76 (149)
Q Consensus         2 L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~lP~--l--~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~n   76 (149)
                      |+|++|.+..+ |..+..+++|+.|+|++|. +..++.  +  ..+|+.|++.+|. +..+|...  .....++.+++.+
T Consensus       197 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l--~~l~~L~~L~l~~  272 (330)
T 1xku_A          197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNK-LVKVPGGL--ADHKYIQVVYLHN  272 (330)
T ss_dssp             EECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSC-CSSCCTTT--TTCSSCCEEECCS
T ss_pred             EECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCCc-CccCChhh--ccCCCcCEEECCC
Confidence            67777777765 5677888888888888877 666553  2  2578888888773 55666532  2334456677665


Q ss_pred             C
Q 043750           77 N   77 (149)
Q Consensus        77 C   77 (149)
                      |
T Consensus       273 N  273 (330)
T 1xku_A          273 N  273 (330)
T ss_dssp             S
T ss_pred             C
Confidence            4

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.32  E-value=0.00034  Score=54.23  Aligned_cols=56  Identities=20%  Similarity=0.144  Sum_probs=27.5

Q ss_pred             EEccCCCccccchh----hcCCCCCCEEccccccccccC-CCCC------CCccEEccccccccccccC
Q 043750            2 LYLSKNNFERIPKS----IIQLSKLSCLYLSYCGKLQSL-PKLP------CSLHKLHAHHCTALESLSG   59 (149)
Q Consensus         2 L~L~~~~~~~lP~s----i~~L~~L~~L~L~~c~~L~~l-P~l~------~~L~~L~~~~C~sL~~~~~   59 (149)
                      |+|++|++..+|..    ++.+++|++|+|+++. +..+ |...      ++|+.|++.++. ++.+|.
T Consensus       202 L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~  268 (310)
T 4glp_A          202 LALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPK  268 (310)
T ss_dssp             CBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCS
T ss_pred             EECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCCC-CCchhh
Confidence            45555655544442    3455566666666555 4433 3211      355555555543 344443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.31  E-value=0.00038  Score=56.55  Aligned_cols=52  Identities=33%  Similarity=0.434  Sum_probs=26.2

Q ss_pred             EEccCCCccccch-hhcCCCCCCEEccccccccccCCCC----CCCccEEcccccccc
Q 043750            2 LYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTAL   54 (149)
Q Consensus         2 L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL   54 (149)
                      |+|++|++..+|. .+..+++|+.|+|+++. +..+|..    ..+|+.|++.+|..+
T Consensus       117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l  173 (440)
T 3zyj_A          117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRL  173 (440)
T ss_dssp             EECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTC
T ss_pred             EECCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCc
Confidence            5566666655554 35555556666555554 4444431    134444444444333

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.29  E-value=0.0003  Score=54.80  Aligned_cols=49  Identities=22%  Similarity=0.269  Sum_probs=24.9

Q ss_pred             EEccCCCccccch-hhcCCCCCCEEccccccccccC-CCCC---CCccEEccccc
Q 043750            2 LYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSL-PKLP---CSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~l-P~l~---~~L~~L~~~~C   51 (149)
                      |+|++|++..+|. .+.++++|++|+|++|. +..+ |+..   .+|+.|++.++
T Consensus        57 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n  110 (330)
T 1xku_A           57 LDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKN  110 (330)
T ss_dssp             EECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCEEECCCC
Confidence            4555555555544 45555555555555554 4433 3222   34555555444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.29  E-value=0.00025  Score=50.99  Aligned_cols=51  Identities=27%  Similarity=0.357  Sum_probs=42.6

Q ss_pred             CEEccCCCccccchh-hcCCCCCCEEccccccccccCCCC----CCCccEEcccccc
Q 043750            1 YLYLSKNNFERIPKS-IIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCT   52 (149)
Q Consensus         1 ~L~L~~~~~~~lP~s-i~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~   52 (149)
                      +|+|++|+|..+|.. +.++++|+.|+|+++. +..+|.-    ..+|+.|++.+..
T Consensus        61 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           61 QLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred             EEECCCCCCCccChhHhCCcchhhEEECCCCc-cceeCHHHhccccCCCEEEeCCCC
Confidence            489999999999987 4899999999999987 8888863    2578888887653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.28  E-value=0.00041  Score=62.12  Aligned_cols=29  Identities=24%  Similarity=0.304  Sum_probs=12.1

Q ss_pred             EEccCCCccccchhhc--CCCCCCEEccccc
Q 043750            2 LYLSKNNFERIPKSII--QLSKLSCLYLSYC   30 (149)
Q Consensus         2 L~L~~~~~~~lP~si~--~L~~L~~L~L~~c   30 (149)
                      |+|++|++..+|..+.  .+++|+.|+|++|
T Consensus       733 L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N  763 (876)
T 4ecn_A          733 IDLRFNKLTSLSDDFRATTLPYLSNMDVSYN  763 (876)
T ss_dssp             EECCSSCCCCCCGGGSTTTCTTCCEEECCSS
T ss_pred             EECCCCCCccchHHhhhccCCCcCEEEeCCC
Confidence            3344444444444433  4444444444443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.28  E-value=0.00063  Score=51.69  Aligned_cols=48  Identities=33%  Similarity=0.450  Sum_probs=23.7

Q ss_pred             EEccCCCccccch-hhcCCCCCCEEccccccccccCCCC----CCCccEEcccc
Q 043750            2 LYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHH   50 (149)
Q Consensus         2 L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~   50 (149)
                      |+|++|++..+|. .+.++++|++|+|+++. +..+|.-    ..+|+.|++.+
T Consensus        42 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             EECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCS
T ss_pred             EECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCC
Confidence            4555555555543 35555555555555554 4444431    13445554443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=97.28  E-value=0.00052  Score=52.35  Aligned_cols=49  Identities=31%  Similarity=0.403  Sum_probs=23.6

Q ss_pred             EEccCCCcccc-chhhcCCCCCCEEccccccccccCCCC----CCCccEEccccc
Q 043750            2 LYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C   51 (149)
                      |+|++|.+..+ |..+.++++|++|+|++|. +..+|..    ..+|+.|++.++
T Consensus       110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n  163 (285)
T 1ozn_A          110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGN  163 (285)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCC
Confidence            45555555544 3345555555555555554 4444431    134555555443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.28  E-value=0.00033  Score=58.00  Aligned_cols=9  Identities=0%  Similarity=0.043  Sum_probs=3.9

Q ss_pred             CCeeEecCC
Q 043750           69 PPRFELNGN   77 (149)
Q Consensus        69 ~~~l~~~nC   77 (149)
                      ++.|++.+|
T Consensus       125 L~~L~L~~n  133 (549)
T 2z81_A          125 LQTLRIGNV  133 (549)
T ss_dssp             CCEEEEEES
T ss_pred             ccEEECCCC
Confidence            334444444

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.28  E-value=0.00048  Score=52.28  Aligned_cols=51  Identities=25%  Similarity=0.308  Sum_probs=42.9

Q ss_pred             CEEccCCCccccch-hhcCCCCCCEEccccccccccCCC--C--CCCccEEcccccc
Q 043750            1 YLYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPK--L--PCSLHKLHAHHCT   52 (149)
Q Consensus         1 ~L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~--l--~~~L~~L~~~~C~   52 (149)
                      +|+|++|++..+|. .+.++++|++|+|++|. +..++.  +  ..+|+.|++.++.
T Consensus        32 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             EEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCc
Confidence            48999999998876 79999999999999996 777775  2  2689999998774

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.27  E-value=0.0005  Score=53.63  Aligned_cols=49  Identities=37%  Similarity=0.497  Sum_probs=25.2

Q ss_pred             EEccCCCcccc-chhhcCCCCCCEEccccccccccCCCC-CCCccEEccccc
Q 043750            2 LYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSLPKL-PCSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~lP~l-~~~L~~L~~~~C   51 (149)
                      |+|++|.+..+ |..+.++++|++|+|+++. +..+|.. ..+|+.|++.++
T Consensus        83 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~L~~L~l~~n  133 (332)
T 2ft3_A           83 LVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLPSSLVELRIHDN  133 (332)
T ss_dssp             EECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCCTTCCEEECCSS
T ss_pred             EECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCccccccCCEEECCCC
Confidence            45555555544 4445555555555555554 4455433 245555555544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.27  E-value=0.00051  Score=58.79  Aligned_cols=75  Identities=19%  Similarity=0.207  Sum_probs=59.5

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEcccc------ccccccCCCCC---CCccEEccccccccccccCCCCCCCCCCCCe
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSY------CGKLQSLPKLP---CSLHKLHAHHCTALESLSGLFPKSYESCPPR   71 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~------c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~   71 (149)
                      +|+|++|++..+|.++.++++|+.|+|++      +.-...+|...   ++|+.|++.+|.- +.+|....    ..++.
T Consensus       517 ~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~----~~L~~  591 (636)
T 4eco_A          517 GIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT----PNISV  591 (636)
T ss_dssp             EEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC----TTCCE
T ss_pred             EEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh----CcCCE
Confidence            48999999999999999999999999954      55466777654   6899999999874 88877432    45778


Q ss_pred             eEecCCCCC
Q 043750           72 FELNGNYNL   80 (149)
Q Consensus        72 l~~~nC~~L   80 (149)
                      |++++|.-.
T Consensus       592 L~Ls~N~l~  600 (636)
T 4eco_A          592 LDIKDNPNI  600 (636)
T ss_dssp             EECCSCTTC
T ss_pred             EECcCCCCc
Confidence            998887544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.24  E-value=0.00047  Score=58.89  Aligned_cols=45  Identities=29%  Similarity=0.423  Sum_probs=18.2

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCCCCCCccEEcccc
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHH   50 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~~~L~~L~~~~   50 (149)
                      |+|++|+|..+|   ..+++|+.|+|++|. +..+|.++.+|+.|++.+
T Consensus        85 L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~l~~~L~~L~Ls~  129 (571)
T 3cvr_A           85 LEITQNALISLP---ELPASLEYLDACDNR-LSTLPELPASLKHLDVDN  129 (571)
T ss_dssp             EECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCS
T ss_pred             EECcCCCCcccc---cccCCCCEEEccCCC-CCCcchhhcCCCEEECCC
Confidence            344444444444   223444444444443 444444223444444433

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.24  E-value=0.00012  Score=53.87  Aligned_cols=80  Identities=10%  Similarity=0.079  Sum_probs=55.6

Q ss_pred             CEEccCCCcc--ccchhhcCCCCCCEEcccccccccc-----CCCC---CCCccEEccccccccccccCCCCCCCCCCCC
Q 043750            1 YLYLSKNNFE--RIPKSIIQLSKLSCLYLSYCGKLQS-----LPKL---PCSLHKLHAHHCTALESLSGLFPKSYESCPP   70 (149)
Q Consensus         1 ~L~L~~~~~~--~lP~si~~L~~L~~L~L~~c~~L~~-----lP~l---~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~   70 (149)
                      +|||+++.+.  .+ ..+.++++|+.|+|++|..+..     |...   ..+|+.|++.+|+.+..---. .......++
T Consensus        65 ~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~~L~  142 (176)
T 3e4g_A           65 AIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFRNLK  142 (176)
T ss_dssp             EEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCTTCC
T ss_pred             EEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCCCCC
Confidence            4789998764  23 3478899999999999986643     4333   237999999999876531110 011235678


Q ss_pred             eeEecCCCCCch
Q 043750           71 RFELNGNYNLDR   82 (149)
Q Consensus        71 ~l~~~nC~~L~~   82 (149)
                      .|++++|.++..
T Consensus       143 ~L~L~~c~~Itd  154 (176)
T 3e4g_A          143 YLFLSDLPGVKE  154 (176)
T ss_dssp             EEEEESCTTCCC
T ss_pred             EEECCCCCCCCc
Confidence            999999999864

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.24  E-value=0.00051  Score=54.55  Aligned_cols=49  Identities=27%  Similarity=0.301  Sum_probs=25.8

Q ss_pred             EEccCCCccccch-hhcCCCCCCEEccccccccccCCCC----CCCccEEccccc
Q 043750            2 LYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C   51 (149)
                      |+|++|+|..+|. .+..+++|++|+|++++ +..+|.-    ..+|+.|++.++
T Consensus        69 L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N  122 (361)
T 2xot_A           69 LLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNN  122 (361)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCC
Confidence            5555555555543 35556666666666555 5555431    144555555544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.24  E-value=0.00059  Score=55.70  Aligned_cols=49  Identities=27%  Similarity=0.253  Sum_probs=25.6

Q ss_pred             EEccCCCcccc-chhhcCCCCCCEEccccccccccCCCC----CCCccEEccccc
Q 043750            2 LYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C   51 (149)
                      |+|++|.+..+ |..+.++++|++|+|+++. +..+|.-    ..+|+.|++.++
T Consensus        61 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n  114 (477)
T 2id5_A           61 LELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISEN  114 (477)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTS
T ss_pred             EECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCC
Confidence            45555555544 4455555555555555554 5555532    145555555544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.23  E-value=0.00052  Score=53.78  Aligned_cols=72  Identities=18%  Similarity=0.199  Sum_probs=53.6

Q ss_pred             EEccCC-CccccchhhcCCCCCCEEccccccccccCCC--C--CCCccEEccccccccccccCCCCCCCCCCCCeeEecC
Q 043750            2 LYLSKN-NFERIPKSIIQLSKLSCLYLSYCGKLQSLPK--L--PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNG   76 (149)
Q Consensus         2 L~L~~~-~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~--l--~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~n   76 (149)
                      ++++++ ++..||. |..+++|+.|+|+++.++..+|.  +  ..+|+.|++.++ .|+.++... ...+..+..|++++
T Consensus        13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDA-FHFTPRLSRLNLSF   89 (347)
T ss_dssp             EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTG-GGSCSCCCEEECCS
T ss_pred             EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHH-hcCCcCCCEEeCCC
Confidence            678888 8999999 99999999999998555999985  2  378999999987 477666421 11234455666654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.22  E-value=0.00017  Score=51.51  Aligned_cols=57  Identities=25%  Similarity=0.218  Sum_probs=46.7

Q ss_pred             CEEccCCCccccchhh-cCCCCCCEEccccccccccCCCC-----CCCccEEccccccccccccC
Q 043750            1 YLYLSKNNFERIPKSI-IQLSKLSCLYLSYCGKLQSLPKL-----PCSLHKLHAHHCTALESLSG   59 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si-~~L~~L~~L~L~~c~~L~~lP~l-----~~~L~~L~~~~C~sL~~~~~   59 (149)
                      +|+|++|.+..+|..+ ..+++|++|+|++|. +..+|.+     .++|+.|++.++. +..+|.
T Consensus        68 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~  130 (176)
T 1a9n_A           68 TLLVNNNRICRIGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKH  130 (176)
T ss_dssp             EEECCSSCCCEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTT
T ss_pred             EEECCCCcccccCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHh
Confidence            4899999999999766 999999999999998 8888872     2689999998875 444443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.22  E-value=0.00051  Score=57.61  Aligned_cols=50  Identities=28%  Similarity=0.304  Sum_probs=27.4

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCC-C---CCCccEEcccccc
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPK-L---PCSLHKLHAHHCT   52 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~-l---~~~L~~L~~~~C~   52 (149)
                      |+|++|.+..+|.++.++++|++|++++|+ +..++. .   .++|+.|++.+|.
T Consensus       283 L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~  336 (606)
T 3t6q_A          283 LDLTATHLSELPSGLVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNT  336 (606)
T ss_dssp             EECTTSCCSCCCSSCCSCTTCCEEECTTCC-CSBGGGGCGGGCTTCSEEECCSCS
T ss_pred             EeccCCccCCCChhhcccccCCEEECccCC-cCcCchhhhhccCcCCEEECCCCC
Confidence            556666666666666666666666666665 433321 1   1455555555543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.22  E-value=7.5e-06  Score=59.82  Aligned_cols=49  Identities=29%  Similarity=0.310  Sum_probs=38.7

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC---CCccEEccccc
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHC   51 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C   51 (149)
                      +|+|++|.+..+| .+..+++|++|+|++|. +..+|...   ++|+.|++.+|
T Consensus        52 ~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N  103 (198)
T 1ds9_A           52 HLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYN  103 (198)
T ss_dssp             EEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEE
T ss_pred             EEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCC
Confidence            4788888888888 78888888888888887 77787654   56788877766

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.22  E-value=0.00075  Score=53.73  Aligned_cols=49  Identities=27%  Similarity=0.356  Sum_probs=25.2

Q ss_pred             EEccCCCccccch-hhcCCCCCCEEccccccccccCCCC----CCCccEEccccc
Q 043750            2 LYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C   51 (149)
                      |+|++|.+..+|. .++++++|++|+|++|. +..+|.-    ..+|+.|++.++
T Consensus        98 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n  151 (390)
T 3o6n_A           98 LYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNN  151 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCCCCcCCHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCC
Confidence            4555555554432 34555555555555554 5555532    245555555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.20  E-value=0.00015  Score=56.40  Aligned_cols=35  Identities=17%  Similarity=0.162  Sum_probs=17.6

Q ss_pred             EEccCCCcc-ccchhh--cCCCCCCEEccccccccccCC
Q 043750            2 LYLSKNNFE-RIPKSI--IQLSKLSCLYLSYCGKLQSLP   37 (149)
Q Consensus         2 L~L~~~~~~-~lP~si--~~L~~L~~L~L~~c~~L~~lP   37 (149)
                      |+|++|++. .+|..+  ..+++|++|+|+++. +..+|
T Consensus       100 L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~  137 (312)
T 1wwl_A          100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRD  137 (312)
T ss_dssp             EEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSS
T ss_pred             EEccCCcccchhHHHHHHhcCCCccEEEccCCC-Ccchh
Confidence            455555554 445544  555555555555554 44333

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.19  E-value=0.00035  Score=54.44  Aligned_cols=7  Identities=14%  Similarity=0.444  Sum_probs=4.0

Q ss_pred             CCCCccc
Q 043750          128 EIPKWFC  134 (149)
Q Consensus       128 ~IP~WF~  134 (149)
                      .+|+||.
T Consensus       259 ~~p~~l~  265 (313)
T 1ogq_A          259 TLPQGLT  265 (313)
T ss_dssp             CCCGGGG
T ss_pred             cCChHHh
Confidence            4566664

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.17  E-value=0.00037  Score=49.75  Aligned_cols=50  Identities=26%  Similarity=0.297  Sum_probs=41.6

Q ss_pred             CEEccCCCccccchh-hcCCCCCCEEccccccccccCCCC-C---CCccEEccccc
Q 043750            1 YLYLSKNNFERIPKS-IIQLSKLSCLYLSYCGKLQSLPKL-P---CSLHKLHAHHC   51 (149)
Q Consensus         1 ~L~L~~~~~~~lP~s-i~~L~~L~~L~L~~c~~L~~lP~l-~---~~L~~L~~~~C   51 (149)
                      +|+|++|+|..+|.. +..+++|++|+|+++. ++.+|.- .   .+|+.|++.+.
T Consensus        58 ~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           58 RLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCCcCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCC
Confidence            489999999999886 5899999999999997 8888863 2   57788877654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.16  E-value=0.00041  Score=54.84  Aligned_cols=70  Identities=30%  Similarity=0.279  Sum_probs=46.1

Q ss_pred             EEccC-CCccccchh-hcCCCCCCEEccccccccccCCCC-CCCccEEccccccccccccCCCCCCCCCCCCeeEec
Q 043750            2 LYLSK-NNFERIPKS-IIQLSKLSCLYLSYCGKLQSLPKL-PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELN   75 (149)
Q Consensus         2 L~L~~-~~~~~lP~s-i~~L~~L~~L~L~~c~~L~~lP~l-~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~   75 (149)
                      |++++ |.+..||.. +.++++|+.|+|++++ ++.+|.- ..+|+.|.+.+|..++.+|...   .+..+..+++.
T Consensus       182 l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~---~l~~L~~l~l~  254 (350)
T 4ay9_X          182 LNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLPTLE---KLVALMEASLT  254 (350)
T ss_dssp             EECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSSSCTTCCEEECTTCTTCCCCCCTT---TCCSCCEEECS
T ss_pred             HhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChhhhccchHhhhccCCCcCcCCCch---hCcChhhCcCC
Confidence            45553 457777764 5777888888888776 7777754 4677888877887787777532   23344555543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.15  E-value=0.00069  Score=56.78  Aligned_cols=49  Identities=22%  Similarity=0.206  Sum_probs=29.5

Q ss_pred             EEccCCCcccc-chhhcCCCCCCEEccccccccccC-CCCC---CCccEEccccc
Q 043750            2 LYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSL-PKLP---CSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~l-P~l~---~~L~~L~~~~C   51 (149)
                      |+|++|.+..+ |..+.++++|++|+|++|. +..+ |+..   .+|+.|++.++
T Consensus        38 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n   91 (606)
T 3t6q_A           38 LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTAN   91 (606)
T ss_dssp             EECTTCCCSEECTTTSTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTC
T ss_pred             EEccCCccCcCChhHhccCccceEEECCCCc-cceeChhhccCccccCeeeCCCC
Confidence            66777776665 4466777777777777665 4433 3322   45666666555

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.14  E-value=0.00087  Score=57.02  Aligned_cols=49  Identities=20%  Similarity=0.244  Sum_probs=25.0

Q ss_pred             EEccCCCccccch-hhcCCCCCCEEccccccccccCCCC----CCCccEEccccc
Q 043750            2 LYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C   51 (149)
                      |+|++|++..+|. +++++++|++|+|++|. +..+|.-    ..+|++|++.+|
T Consensus        78 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n  131 (680)
T 1ziw_A           78 LNLQHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHN  131 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSS
T ss_pred             EECCCCccCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCC
Confidence            4555555555554 35555555555555554 4444421    134555555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.13  E-value=0.00087  Score=56.73  Aligned_cols=49  Identities=27%  Similarity=0.361  Sum_probs=23.0

Q ss_pred             EEccCCCccccchh-hcCCCCCCEEccccccccccCCCC----CCCccEEccccc
Q 043750            2 LYLSKNNFERIPKS-IIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~lP~s-i~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C   51 (149)
                      |+|++|.+..+|.. ++++++|++|+|++|. +..+|.-    ..+|+.|++.+|
T Consensus       104 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N  157 (597)
T 3oja_B          104 LYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNN  157 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCcCCCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCC
Confidence            44555555444332 3455555555555554 4444431    134555555544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.13  E-value=0.00083  Score=56.83  Aligned_cols=74  Identities=19%  Similarity=0.203  Sum_probs=49.7

Q ss_pred             CEEccCCCccccch-hhcCCCCCCEEccccccccccCCCC----CCCccEEccccccccccccCCCCCCCCCCCCeeEec
Q 043750            1 YLYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELN   75 (149)
Q Consensus         1 ~L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~   75 (149)
                      +|+|++|.+..+|. .+..+++|++|+|++|. +..+|.-    ..+|+.|++.+|. +..+|... ...+..+..|++.
T Consensus        79 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~-~~~l~~L~~L~Ls  155 (597)
T 3oja_B           79 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERND-LSSLPRGI-FHNTPKLTTLSMS  155 (597)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT-TTTCTTCCEEECC
T ss_pred             EEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHH-hccCCCCCEEEee
Confidence            47888888887765 78888899999998887 7776642    2678888888774 55555421 1122344555555


Q ss_pred             CC
Q 043750           76 GN   77 (149)
Q Consensus        76 nC   77 (149)
                      +|
T Consensus       156 ~N  157 (597)
T 3oja_B          156 NN  157 (597)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.13  E-value=0.00065  Score=58.29  Aligned_cols=48  Identities=27%  Similarity=0.438  Sum_probs=26.1

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccc
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C   51 (149)
                      |+|++|.+..+|. +..+++|+.|+|++|. +..+|.+.  .+|+.|++.+|
T Consensus        70 L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N  119 (605)
T 1m9s_A           70 LFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSLSLEHN  119 (605)
T ss_dssp             EECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEEECTTS
T ss_pred             EEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCChhhccCCCCCEEEecCC
Confidence            5555555555554 5555556666655554 55555432  45555555444

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=97.12  E-value=0.00064  Score=59.30  Aligned_cols=74  Identities=20%  Similarity=0.196  Sum_probs=35.1

Q ss_pred             EEccCCCcc-ccchhhcCCCCCCEEccccccccccCCCCC---CCccEEccccccccccccCCCCCCCCCCCCeeEecCC
Q 043750            2 LYLSKNNFE-RIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGN   77 (149)
Q Consensus         2 L~L~~~~~~-~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC   77 (149)
                      |+|++|.+. .+|.++.++++|++|+|++|+-...+|+..   ++|+.|++.+|.-...+|....  ....++.+++.+|
T Consensus       471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~Ls~N  548 (768)
T 3rgz_A          471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG--DCRSLIWLDLNTN  548 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGG--GCTTCCEEECCSS
T ss_pred             EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHc--CCCCCCEEECCCC
Confidence            455555554 445555555555555555555333444432   4455555555543334443211  2233445555544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.12  E-value=0.00086  Score=55.26  Aligned_cols=50  Identities=16%  Similarity=0.141  Sum_probs=35.4

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCC-CCCCccEEcccccc
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPK-LPCSLHKLHAHHCT   52 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~-l~~~L~~L~~~~C~   52 (149)
                      +|+|++|.+..+| ++..+++|++|+|++|. +..+|- -..+|++|++.+|.
T Consensus        46 ~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~L~~L~Ls~N~   96 (457)
T 3bz5_A           46 SLDCHNSSITDMT-GIEKLTGLTKLICTSNN-ITTLDLSQNTNLTYLACDSNK   96 (457)
T ss_dssp             EEECCSSCCCCCT-TGGGCTTCSEEECCSSC-CSCCCCTTCTTCSEEECCSSC
T ss_pred             EEEccCCCcccCh-hhcccCCCCEEEccCCc-CCeEccccCCCCCEEECcCCC
Confidence            3778888888777 58888888888888876 776651 12567777776654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.12  E-value=0.0008  Score=60.23  Aligned_cols=76  Identities=17%  Similarity=0.169  Sum_probs=60.8

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEcccc------ccccccCCCCC---CCccEEccccccccccccCCCCCCCCCCCCe
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSY------CGKLQSLPKLP---CSLHKLHAHHCTALESLSGLFPKSYESCPPR   71 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~------c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~   71 (149)
                      +|+|++|++..+|.++..+++|+.|+|++      |.-...+|...   ++|+.|++.+|. +..+|....    ..++.
T Consensus       757 ~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l~----~~L~~  831 (876)
T 4ecn_A          757 NMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKLT----PQLYI  831 (876)
T ss_dssp             EEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC----SSSCE
T ss_pred             EEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHhhc----CCCCE
Confidence            48999999999999999999999999977      55556777543   689999999987 488887532    35778


Q ss_pred             eEecCCCCCc
Q 043750           72 FELNGNYNLD   81 (149)
Q Consensus        72 l~~~nC~~L~   81 (149)
                      |++++|.-..
T Consensus       832 LdLs~N~l~~  841 (876)
T 4ecn_A          832 LDIADNPNIS  841 (876)
T ss_dssp             EECCSCTTCE
T ss_pred             EECCCCCCCc
Confidence            9999886443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.11  E-value=0.00056  Score=53.26  Aligned_cols=48  Identities=19%  Similarity=0.203  Sum_probs=22.2

Q ss_pred             EEccCCCccccc-hhh-cCCCCCCEEccccccccccCCCC--CCCccEEcccc
Q 043750            2 LYLSKNNFERIP-KSI-IQLSKLSCLYLSYCGKLQSLPKL--PCSLHKLHAHH   50 (149)
Q Consensus         2 L~L~~~~~~~lP-~si-~~L~~L~~L~L~~c~~L~~lP~l--~~~L~~L~~~~   50 (149)
                      |+|++|.+..++ ..+ ..+++|++|+|++|. +..+|..  ..+|+.|++.+
T Consensus       149 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~l~~L~~L~Ls~  200 (317)
T 3o53_A          149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSS  200 (317)
T ss_dssp             EECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCS
T ss_pred             EECCCCCCCcccHHHHhhccCcCCEEECCCCc-CcccccccccccCCEEECCC
Confidence            455555555432 223 245555555555554 4444433  23444444443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.11  E-value=0.00062  Score=58.42  Aligned_cols=47  Identities=28%  Similarity=0.407  Sum_probs=22.0

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEcccc
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHH   50 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~   50 (149)
                      |+|++|.+..+| .+..+++|+.|+|++|. +..+|.+.  .+|+.|++.+
T Consensus        92 L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~  140 (605)
T 1m9s_A           92 LFLDENKIKDLS-SLKDLKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGN  140 (605)
T ss_dssp             EECCSSCCCCCT-TSTTCTTCCEEECTTSC-CCCCGGGGGCTTCSEEECCS
T ss_pred             EECcCCCCCCCh-hhccCCCCCEEEecCCC-CCCCccccCCCccCEEECCC
Confidence            455555555544 35555555555555544 44443331  3444444443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.11  E-value=0.00058  Score=60.18  Aligned_cols=35  Identities=26%  Similarity=0.176  Sum_probs=19.6

Q ss_pred             EEccCCCcccc-chhhcCCCCCCEEccccccccccC
Q 043750            2 LYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSL   36 (149)
Q Consensus         2 L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~l   36 (149)
                      |+|++|.+..+ |.++.++++|++|+|++|.....+
T Consensus        29 LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i   64 (844)
T 3j0a_A           29 LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI   64 (844)
T ss_dssp             EEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEE
T ss_pred             EECCCCcCCccChhHCcccccCeEEeCCCCCCcccc
Confidence            56666666544 445555666666666555444444

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.10  E-value=0.00088  Score=52.23  Aligned_cols=76  Identities=20%  Similarity=0.063  Sum_probs=54.1

Q ss_pred             CEEccCCCccccch-hhcCCCCCCEEccccccccccCCCCC---CCccEEccccccccccccCCC-CCC----CCCCCCe
Q 043750            1 YLYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSGLF-PKS----YESCPPR   71 (149)
Q Consensus         1 ~L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~~~-~~~----~~~~~~~   71 (149)
                      +|+|++|.+..++. .+..+++|+.|+|++|+ +..+|...   .+|+.|++.++. ++.++... ...    ....+..
T Consensus       221 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~  298 (332)
T 2ft3_A          221 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNG  298 (332)
T ss_dssp             CCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSE
T ss_pred             EEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccc
Confidence            47899999988765 78999999999999997 88888753   678999998874 66555421 100    0123456


Q ss_pred             eEecCCC
Q 043750           72 FELNGNY   78 (149)
Q Consensus        72 l~~~nC~   78 (149)
                      +++.++.
T Consensus       299 L~l~~N~  305 (332)
T 2ft3_A          299 ISLFNNP  305 (332)
T ss_dssp             EECCSSS
T ss_pred             eEeecCc
Confidence            7776654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.10  E-value=0.00038  Score=54.22  Aligned_cols=74  Identities=19%  Similarity=0.142  Sum_probs=56.6

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC---CCccEEccccccccccccCCCCCCCCCCCCeeEecCC
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGN   77 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC   77 (149)
                      +|+|++|.+..+|. ...+++|+.|+|++|. +..+|...   .+|+.|++.++ .++.+|...  .....++.+++.++
T Consensus       173 ~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~--~~l~~L~~L~l~~N  247 (317)
T 3o53_A          173 HLNLQYNFIYDVKG-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN-KLVLIEKAL--RFSQNLEHFDLRGN  247 (317)
T ss_dssp             EEECTTSCCCEEEC-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS-CCCEECTTC--CCCTTCCEEECTTC
T ss_pred             EEECCCCcCccccc-ccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCC-cccchhhHh--hcCCCCCEEEccCC
Confidence            48999999998876 4569999999999998 88887543   68999999988 477777633  23456778888776


Q ss_pred             CC
Q 043750           78 YN   79 (149)
Q Consensus        78 ~~   79 (149)
                      .=
T Consensus       248 ~~  249 (317)
T 3o53_A          248 GF  249 (317)
T ss_dssp             CC
T ss_pred             Cc
Confidence            54

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.07  E-value=0.00096  Score=52.96  Aligned_cols=56  Identities=29%  Similarity=0.296  Sum_probs=44.1

Q ss_pred             CEEccCCCccccchh-hc-CCCCCCEEccccccccccCCCC----CCCccEEcccccccccccc
Q 043750            1 YLYLSKNNFERIPKS-II-QLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLS   58 (149)
Q Consensus         1 ~L~L~~~~~~~lP~s-i~-~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~   58 (149)
                      +|+|++|+|..+|.. +. .+++|+.|+|+++. +..+|.-    ..+|+.|++.++. ++.++
T Consensus        43 ~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~  104 (361)
T 2xot_A           43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNH-LHTLD  104 (361)
T ss_dssp             EEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEEC
T ss_pred             EEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCc-CCcCC
Confidence            489999999988775 44 89999999999998 8888742    2689999998764 44444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.02  E-value=0.0011  Score=58.41  Aligned_cols=30  Identities=30%  Similarity=0.446  Sum_probs=14.3

Q ss_pred             EEccCCCcccc-chhhcCCCCCCEEcccccc
Q 043750            2 LYLSKNNFERI-PKSIIQLSKLSCLYLSYCG   31 (149)
Q Consensus         2 L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~   31 (149)
                      |+|++|++..+ |..++++++|++|+|++|.
T Consensus        78 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~  108 (844)
T 3j0a_A           78 LDLGSSKIYFLHPDAFQGLFHLFELRLYFCG  108 (844)
T ss_dssp             EECTTCCCCEECTTSSCSCSSCCCEECTTCC
T ss_pred             EECCCCcCcccCHhHccCCcccCEeeCcCCC
Confidence            44444444433 4444555555555555444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.99  E-value=0.00062  Score=56.52  Aligned_cols=56  Identities=27%  Similarity=0.255  Sum_probs=41.9

Q ss_pred             CEEccCCCccccc-hhhcCCCCCCEEccccccccccCCCC--CCCccEEcccccccccccc
Q 043750            1 YLYLSKNNFERIP-KSIIQLSKLSCLYLSYCGKLQSLPKL--PCSLHKLHAHHCTALESLS   58 (149)
Q Consensus         1 ~L~L~~~~~~~lP-~si~~L~~L~~L~L~~c~~L~~lP~l--~~~L~~L~~~~C~sL~~~~   58 (149)
                      +|+|++|.+..+| ..+..+++|++|+|++|. +..++.+  .++|+.|++.+|. +..++
T Consensus        38 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~l~   96 (487)
T 3oja_A           38 ELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNY-VQELL   96 (487)
T ss_dssp             EEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCSSE-EEEEE
T ss_pred             EEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecCCc-CCCCC
Confidence            4789999988775 578999999999999887 6655444  2678888888773 44444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=96.95  E-value=0.0013  Score=55.99  Aligned_cols=50  Identities=24%  Similarity=0.280  Sum_probs=31.3

Q ss_pred             EEccCCCcccc-chhhcCCCCCCEEccccccccccCCCC----CCCccEEcccccc
Q 043750            2 LYLSKNNFERI-PKSIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCT   52 (149)
Q Consensus         2 L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~   52 (149)
                      |+|++|.+..+ |..++++++|++|+|++|. +..+|.-    ..+|++|++.+|.
T Consensus        54 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~  108 (680)
T 1ziw_A           54 LDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSNS  108 (680)
T ss_dssp             EECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred             EECCCCccCccCHHHHhcccCcCEEECCCCc-cCccChhhhccCCCCCEEECCCCc
Confidence            56666666544 4456667777777777665 6666652    2567777776653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=96.91  E-value=0.00077  Score=52.34  Aligned_cols=76  Identities=13%  Similarity=0.055  Sum_probs=53.3

Q ss_pred             CEEccCCCccccchhhcCC-----CCCCEEccccccccccCC-CC---CCCccEEcccccccccc--ccCCCCCCCCCCC
Q 043750            1 YLYLSKNNFERIPKSIIQL-----SKLSCLYLSYCGKLQSLP-KL---PCSLHKLHAHHCTALES--LSGLFPKSYESCP   69 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L-----~~L~~L~L~~c~~L~~lP-~l---~~~L~~L~~~~C~sL~~--~~~~~~~~~~~~~   69 (149)
                      +|+|++|.+..+|..+..+     ++|++|+|++|. +..+| +.   ..+|+.|++.++.-...  ++..........+
T Consensus       125 ~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L  203 (312)
T 1wwl_A          125 ILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTL  203 (312)
T ss_dssp             EEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTC
T ss_pred             EEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCC
Confidence            4789999998888888887     899999999988 67766 33   26889999988864332  1111111234456


Q ss_pred             CeeEecCC
Q 043750           70 PRFELNGN   77 (149)
Q Consensus        70 ~~l~~~nC   77 (149)
                      +.|++.+|
T Consensus       204 ~~L~L~~N  211 (312)
T 1wwl_A          204 QVLALRNA  211 (312)
T ss_dssp             CEEECTTS
T ss_pred             CEEECCCC
Confidence            78888776

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=96.91  E-value=0.0016  Score=53.71  Aligned_cols=46  Identities=22%  Similarity=0.224  Sum_probs=26.0

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCCC--CCCccEEccccc
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKL--PCSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l--~~~L~~L~~~~C   51 (149)
                      |+|++|.+..+|  ++.+++|++|++++|. +..+| +  ..+|++|++.++
T Consensus        69 L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~-~~~l~~L~~L~L~~N  116 (457)
T 3bz5_A           69 LICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD-VTPLTKLTYLNCDTN  116 (457)
T ss_dssp             EECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC-CTTCTTCCEEECCSS
T ss_pred             EEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee-cCCCCcCCEEECCCC
Confidence            566666666654  5666666666666655 55544 2  145555555544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=96.89  E-value=8.4e-05  Score=54.12  Aligned_cols=66  Identities=15%  Similarity=0.166  Sum_probs=44.7

Q ss_pred             CccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccccccccccCCCCCCCCCCCCeeEecCC
Q 043750            8 NFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGN   77 (149)
Q Consensus         8 ~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC   77 (149)
                      .++.+|..+..+++|++|+|++|. +..+|.+.  .+|+.|++.+|. ++.+|....  ....++.|++.+|
T Consensus        36 ~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~~~L~~L~L~~N  103 (198)
T 1ds9_A           36 PIEKMDATLSTLKACKHLALSTNN-IEKISSLSGMENLRILSLGRNL-IKKIENLDA--VADTLEELWISYN  103 (198)
T ss_dssp             TCCCCHHHHHHTTTCSEEECSEEE-ESCCCCHHHHTTCCEEEEEEEE-ECSCSSHHH--HHHHCSEEEEEEE
T ss_pred             cHhhhhHHHhcCCCCCEEECCCCC-CccccccccCCCCCEEECCCCC-cccccchhh--cCCcCCEEECcCC
Confidence            566777788889999999998886 77788443  688888888774 555554211  1123456666655

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=96.83  E-value=0.00012  Score=56.83  Aligned_cols=29  Identities=31%  Similarity=0.334  Sum_probs=12.4

Q ss_pred             EEccCCCcc-ccchhhcCCCCCCEEccccc
Q 043750            2 LYLSKNNFE-RIPKSIIQLSKLSCLYLSYC   30 (149)
Q Consensus         2 L~L~~~~~~-~lP~si~~L~~L~~L~L~~c   30 (149)
                      |+|++|.+. ..|..+.++++|++|+|++|
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~  152 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGC  152 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence            344444433 33344444444444444444

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=96.80  E-value=0.0017  Score=53.73  Aligned_cols=50  Identities=22%  Similarity=0.194  Sum_probs=23.6

Q ss_pred             EEccCCCccc-cchhhcCCCCCCEEcccccccc-ccCCCCC---CCccEEccccc
Q 043750            2 LYLSKNNFER-IPKSIIQLSKLSCLYLSYCGKL-QSLPKLP---CSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~-lP~si~~L~~L~~L~L~~c~~L-~~lP~l~---~~L~~L~~~~C   51 (149)
                      |++++|.+.. .|..+.++++|+.|+|++|.-. ..+|...   ++|+.|++.+|
T Consensus       426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n  480 (570)
T 2z63_A          426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC  480 (570)
T ss_dssp             EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred             EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC
Confidence            4555555543 3444555555555555555421 1344322   34555555544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=96.80  E-value=0.0016  Score=52.53  Aligned_cols=30  Identities=30%  Similarity=0.473  Sum_probs=15.0

Q ss_pred             EEccCCCcccc-chhhcCCCCCCEEcccccc
Q 043750            2 LYLSKNNFERI-PKSIIQLSKLSCLYLSYCG   31 (149)
Q Consensus         2 L~L~~~~~~~l-P~si~~L~~L~~L~L~~c~   31 (149)
                      |+|++|.+..+ |..++++++|++|+|++|.
T Consensus        84 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  114 (455)
T 3v47_A           84 LKLDYNQFLQLETGAFNGLANLEVLTLTQCN  114 (455)
T ss_dssp             EECTTCTTCEECTTTTTTCTTCCEEECTTSC
T ss_pred             EeCCCCccCccChhhccCcccCCEEeCCCCC
Confidence            44555554433 4445555555555555554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=96.78  E-value=0.0023  Score=52.13  Aligned_cols=49  Identities=20%  Similarity=0.290  Sum_probs=33.3

Q ss_pred             EEccCCCccccch-hhcCCCCCCEEccccccccccCCCC----CCCccEEccccc
Q 043750            2 LYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C   51 (149)
                      |+|++|++..+|. .+.++++|+.|+|+++. +..++..    ..+|+.|++.++
T Consensus       229 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n  282 (477)
T 2id5_A          229 LSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGG  282 (477)
T ss_dssp             EEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSS
T ss_pred             EECcCCcccccCHHHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCC
Confidence            6777777777774 57778888888888776 6665542    146666666655

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=96.73  E-value=0.0022  Score=52.44  Aligned_cols=72  Identities=21%  Similarity=0.265  Sum_probs=47.1

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCCC--CCCccEEccccccccccccCCCCCCCCCCCCeeEecCCC
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKL--PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGNY   78 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l--~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC~   78 (149)
                      +|+|++|.+..+|. +..+++|+.|+|++|. +..++.+  .++|+.|++.+|. +..++..   ..+..++.|++.+|.
T Consensus       291 ~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~~l---~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          291 NLELNENQLEDISP-ISNLKNLTYLTLYFNN-ISDISPVSSLTKLQRLFFYNNK-VSDVSSL---ANLTNINWLSAGHNQ  364 (466)
T ss_dssp             EEECCSSCCSCCGG-GGGCTTCSEEECCSSC-CSCCGGGGGCTTCCEEECCSSC-CCCCGGG---TTCTTCCEEECCSSC
T ss_pred             eEEcCCCcccCchh-hcCCCCCCEEECcCCc-CCCchhhccCccCCEeECCCCc-cCCchhh---ccCCCCCEEeCCCCc
Confidence            37788888887776 7888888888888886 6665543  2678888887773 4444321   123345566666654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=96.70  E-value=0.00021  Score=55.54  Aligned_cols=79  Identities=23%  Similarity=0.248  Sum_probs=47.7

Q ss_pred             CEEccCCCccc--cchhhcCCCCCCEEccccccccc-cCCCC---CCCccEEcccccccccc--ccCCCCCCCCCCCCee
Q 043750            1 YLYLSKNNFER--IPKSIIQLSKLSCLYLSYCGKLQ-SLPKL---PCSLHKLHAHHCTALES--LSGLFPKSYESCPPRF   72 (149)
Q Consensus         1 ~L~L~~~~~~~--lP~si~~L~~L~~L~L~~c~~L~-~lP~l---~~~L~~L~~~~C~sL~~--~~~~~~~~~~~~~~~l   72 (149)
                      +|+|++|.+..  +|..+..+++|++|+|++|. +. ..|..   .++|+.|++.+|..+..  ++...  .....++.|
T Consensus        97 ~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~--~~~~~L~~L  173 (336)
T 2ast_B           97 HMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL--SSCSRLDEL  173 (336)
T ss_dssp             EEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH--HHCTTCCEE
T ss_pred             EEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH--hcCCCCCEE
Confidence            36777777652  77778888888888888876 43 22321   25788888888754542  22211  112345667


Q ss_pred             EecCCCCCch
Q 043750           73 ELNGNYNLDR   82 (149)
Q Consensus        73 ~~~nC~~L~~   82 (149)
                      ++.+|.++..
T Consensus       174 ~l~~~~~l~~  183 (336)
T 2ast_B          174 NLSWCFDFTE  183 (336)
T ss_dssp             ECCCCTTCCH
T ss_pred             cCCCCCCcCh
Confidence            7777755543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.69  E-value=0.0012  Score=54.76  Aligned_cols=75  Identities=19%  Similarity=0.134  Sum_probs=53.9

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC---CCccEEccccccccccccCCCCCCCCCCCCeeEecCC
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGN   77 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC   77 (149)
                      +|+|++|.|..+|. ...+++|+.|+|++|. +..+|...   .+|+.|++.++. +..+|...  .....+..+++.++
T Consensus       173 ~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l--~~l~~L~~L~l~~N  247 (487)
T 3oja_A          173 HLNLQYNFIYDVKG-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK-LVLIEKAL--RFSQNLEHFDLRGN  247 (487)
T ss_dssp             EEECTTSCCCEEEC-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC-CCEECTTC--CCCTTCCEEECTTC
T ss_pred             EEecCCCccccccc-cccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCc-Ccccchhh--ccCCCCCEEEcCCC
Confidence            47899999888876 4568999999999887 77776543   678899988865 66666532  23345667888776


Q ss_pred             CCC
Q 043750           78 YNL   80 (149)
Q Consensus        78 ~~L   80 (149)
                      .-.
T Consensus       248 ~l~  250 (487)
T 3oja_A          248 GFH  250 (487)
T ss_dssp             CBC
T ss_pred             CCc
Confidence            543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=96.25  E-value=0.0031  Score=48.73  Aligned_cols=71  Identities=28%  Similarity=0.300  Sum_probs=54.4

Q ss_pred             CEEccCCCcccc-chhhcCC---CCCCEEccccccccccCCCC-CCCccEEccccccccccccCCCCCCCCCCCCeeEec
Q 043750            1 YLYLSKNNFERI-PKSIIQL---SKLSCLYLSYCGKLQSLPKL-PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELN   75 (149)
Q Consensus         1 ~L~L~~~~~~~l-P~si~~L---~~L~~L~L~~c~~L~~lP~l-~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~   75 (149)
                      +|+|++|.+..+ |..+..+   ++|++|+|++|. +..+|.. +.+|+.|++.++. ++.+|...   .+..++.|++.
T Consensus       228 ~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N~-l~~~~~~~---~l~~L~~L~L~  302 (310)
T 4glp_A          228 SLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSNR-LNRAPQPD---ELPEVDNLTLD  302 (310)
T ss_dssp             SEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCCCSCCSCEECCSCC-CCSCCCTT---SCCCCSCEECS
T ss_pred             EEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhhhcCCCCEEECCCCc-CCCCchhh---hCCCccEEECc
Confidence            589999999876 8888887   699999999998 8899874 5799999998875 66655422   23345566664


Q ss_pred             C
Q 043750           76 G   76 (149)
Q Consensus        76 n   76 (149)
                      +
T Consensus       303 ~  303 (310)
T 4glp_A          303 G  303 (310)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=95.63  E-value=0.0028  Score=50.39  Aligned_cols=15  Identities=7%  Similarity=-0.077  Sum_probs=6.4

Q ss_pred             hcCCCCCCEEccccc
Q 043750           16 IIQLSKLSCLYLSYC   30 (149)
Q Consensus        16 i~~L~~L~~L~L~~c   30 (149)
                      +..+++|+.|+|++|
T Consensus       183 l~~~~~L~~L~L~~n  197 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQN  197 (386)
T ss_dssp             HHHCTTCCEEECCSS
T ss_pred             HHhCCCcCEEECcCC
Confidence            334444444444444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.56  E-value=0.0074  Score=46.82  Aligned_cols=48  Identities=19%  Similarity=0.144  Sum_probs=28.4

Q ss_pred             EccCCCccccchhh----cCCCCCCEEccccccccccCCCCC------CCccEEccccc
Q 043750            3 YLSKNNFERIPKSI----IQLSKLSCLYLSYCGKLQSLPKLP------CSLHKLHAHHC   51 (149)
Q Consensus         3 ~L~~~~~~~lP~si----~~L~~L~~L~L~~c~~L~~lP~l~------~~L~~L~~~~C   51 (149)
                      +++.|....++..+    .++++|+.|+|++++ +..++.++      ++|+.|++.+.
T Consensus       149 ~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N  206 (267)
T 3rw6_A          149 DVVLNRRSCMAATLRIIEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGN  206 (267)
T ss_dssp             CCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred             cccCCHHHHHHHHHHHHHhhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCC
Confidence            44555444444322    456777777777776 66655432      56777777654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=94.89  E-value=0.02  Score=44.48  Aligned_cols=36  Identities=28%  Similarity=0.251  Sum_probs=23.8

Q ss_pred             EEccCCCccccchh-hcCCCCCCEEccccccccccCCCC
Q 043750            2 LYLSKNNFERIPKS-IIQLSKLSCLYLSYCGKLQSLPKL   39 (149)
Q Consensus         2 L~L~~~~~~~lP~s-i~~L~~L~~L~L~~c~~L~~lP~l   39 (149)
                      |+|++|++..||+. +.++++|+.|.|.+.  ++.|++-
T Consensus       231 l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~  267 (329)
T 3sb4_A          231 LDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQR  267 (329)
T ss_dssp             EECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTT
T ss_pred             EECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHH
Confidence            56777777777763 677777777777653  5555543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=94.85  E-value=0.0082  Score=47.63  Aligned_cols=50  Identities=16%  Similarity=0.210  Sum_probs=27.8

Q ss_pred             EEccCCCcc------ccchhhcCCCCCCEEcccccccc-----ccCCCCC---CCccEEcccccc
Q 043750            2 LYLSKNNFE------RIPKSIIQLSKLSCLYLSYCGKL-----QSLPKLP---CSLHKLHAHHCT   52 (149)
Q Consensus         2 L~L~~~~~~------~lP~si~~L~~L~~L~L~~c~~L-----~~lP~l~---~~L~~L~~~~C~   52 (149)
                      |+|++|.+.      -+|..+..+++|+.|+|++|. +     ..+|...   ++|+.|++.+|.
T Consensus       192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~  255 (386)
T 2ca6_A          192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCL  255 (386)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence            566666655      233356666666666666665 4     3344321   456666666654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=94.37  E-value=0.028  Score=45.11  Aligned_cols=50  Identities=22%  Similarity=0.341  Sum_probs=29.9

Q ss_pred             EEccCCCcc-----ccchhhcCCCCCCEEcccccccccc---------CCCCCCCccEEcccccc
Q 043750            2 LYLSKNNFE-----RIPKSIIQLSKLSCLYLSYCGKLQS---------LPKLPCSLHKLHAHHCT   52 (149)
Q Consensus         2 L~L~~~~~~-----~lP~si~~L~~L~~L~L~~c~~L~~---------lP~l~~~L~~L~~~~C~   52 (149)
                      |+|++|++.     .+|..+..+++|++|+|++|. +..         ++....+|+.|++.+|.
T Consensus        33 L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~   96 (461)
T 1z7x_W           33 VRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCC   96 (461)
T ss_dssp             EEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSC
T ss_pred             EEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCC
Confidence            567777665     456667777777777777765 332         11111257777777664

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=93.96  E-value=0.017  Score=47.85  Aligned_cols=51  Identities=18%  Similarity=0.264  Sum_probs=23.3

Q ss_pred             EEccCCCcc-ccchhhc-CCCCCCEEcccccccccc--CCCC---CCCccEEcccccc
Q 043750            2 LYLSKNNFE-RIPKSII-QLSKLSCLYLSYCGKLQS--LPKL---PCSLHKLHAHHCT   52 (149)
Q Consensus         2 L~L~~~~~~-~lP~si~-~L~~L~~L~L~~c~~L~~--lP~l---~~~L~~L~~~~C~   52 (149)
                      |+|++|.+. ..+..+. .+++|+.|+|++|..+..  ++.+   .++|+.|++.+|.
T Consensus       110 L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  167 (594)
T 2p1m_B          110 IRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD  167 (594)
T ss_dssp             EEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred             EEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence            455555443 2223333 455566666655543333  2222   1345555555443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=93.49  E-value=0.026  Score=46.76  Aligned_cols=75  Identities=25%  Similarity=0.220  Sum_probs=45.1

Q ss_pred             EEccCC-Cccc--cchhhcCCCCCCEEcccccc----c---cccCCCCCCCccEEcccccc------ccccccCCCCCCC
Q 043750            2 LYLSKN-NFER--IPKSIIQLSKLSCLYLSYCG----K---LQSLPKLPCSLHKLHAHHCT------ALESLSGLFPKSY   65 (149)
Q Consensus         2 L~L~~~-~~~~--lP~si~~L~~L~~L~L~~c~----~---L~~lP~l~~~L~~L~~~~C~------sL~~~~~~~~~~~   65 (149)
                      |+|++| .+..  ++..+..+++|++|+|++|.    .   +..++...++|+.|++.+|.      .+..+..     .
T Consensus       135 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~-----~  209 (594)
T 2p1m_B          135 LVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT-----R  209 (594)
T ss_dssp             EEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH-----H
T ss_pred             EeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH-----h
Confidence            677777 4543  66656678888888888876    1   22233333578888888775      1111110     1


Q ss_pred             CCCCCeeEecCCCCCc
Q 043750           66 ESCPPRFELNGNYNLD   81 (149)
Q Consensus        66 ~~~~~~l~~~nC~~L~   81 (149)
                      ...++.|++.+|..+.
T Consensus       210 ~~~L~~L~L~~~~~~~  225 (594)
T 2p1m_B          210 CPNLKSLKLNRAVPLE  225 (594)
T ss_dssp             CTTCCEEECCTTSCHH
T ss_pred             CCCCcEEecCCCCcHH
Confidence            2346678888885543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=93.26  E-value=0.061  Score=42.28  Aligned_cols=11  Identities=18%  Similarity=0.141  Sum_probs=4.9

Q ss_pred             CCCEEcccccc
Q 043750           21 KLSCLYLSYCG   31 (149)
Q Consensus        21 ~L~~L~L~~c~   31 (149)
                      +|+.|+|++|.
T Consensus       168 ~L~~L~Ls~n~  178 (362)
T 3goz_A          168 NVNSLNLRGNN  178 (362)
T ss_dssp             TCCEEECTTSC
T ss_pred             cccEeeecCCC
Confidence            44444444443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=93.05  E-value=0.052  Score=43.56  Aligned_cols=50  Identities=26%  Similarity=0.280  Sum_probs=31.0

Q ss_pred             CEEccCCCcc-----ccchhhcCCCCCCEEccccccccccC---------CCCCCCccEEccccc
Q 043750            1 YLYLSKNNFE-----RIPKSIIQLSKLSCLYLSYCGKLQSL---------PKLPCSLHKLHAHHC   51 (149)
Q Consensus         1 ~L~L~~~~~~-----~lP~si~~L~~L~~L~L~~c~~L~~l---------P~l~~~L~~L~~~~C   51 (149)
                      +|+|++|.+.     .+|..+..+++|++|+|++|. +...         ..-..+|+.|++.+|
T Consensus        89 ~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n  152 (461)
T 1z7x_W           89 KLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYC  152 (461)
T ss_dssp             EEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             EEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCC
Confidence            3677777766     467777777788888887776 4321         111135666666665

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=92.81  E-value=0.074  Score=41.79  Aligned_cols=12  Identities=17%  Similarity=0.268  Sum_probs=4.9

Q ss_pred             CCCCEEcccccc
Q 043750           20 SKLSCLYLSYCG   31 (149)
Q Consensus        20 ~~L~~L~L~~c~   31 (149)
                      ++|+.|+|++|.
T Consensus       109 ~~L~~L~Ls~N~  120 (362)
T 3goz_A          109 FTITVLDLGWND  120 (362)
T ss_dssp             TTCCEEECCSSC
T ss_pred             CCccEEECcCCc
Confidence            344444444433

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=92.71  E-value=0.072  Score=41.17  Aligned_cols=50  Identities=28%  Similarity=0.233  Sum_probs=35.3

Q ss_pred             CEEccCCCccccc---hhhcCCCCCCEEccccccccccCCCCC--C--CccEEccccc
Q 043750            1 YLYLSKNNFERIP---KSIIQLSKLSCLYLSYCGKLQSLPKLP--C--SLHKLHAHHC   51 (149)
Q Consensus         1 ~L~L~~~~~~~lP---~si~~L~~L~~L~L~~c~~L~~lP~l~--~--~L~~L~~~~C   51 (149)
                      +|+|++|+|..++   ..+..+++|+.|+|+++. +..+.++-  .  +|+.|++.+.
T Consensus       174 ~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~l~~l~~l~L~~L~L~~N  230 (267)
T 3rw6_A          174 SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGN  230 (267)
T ss_dssp             EEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGGGGGGTTSCCSEEECTTS
T ss_pred             EEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchhhhhcccCCcceEEccCC
Confidence            4899999987654   667899999999999887 66653321  1  4455555443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=92.38  E-value=0.077  Score=36.30  Aligned_cols=46  Identities=17%  Similarity=0.192  Sum_probs=33.5

Q ss_pred             EEccCCCcc--ccchhhcCCCCCCEEccccccccccCCCCC----CCccEEcccc
Q 043750            2 LYLSKNNFE--RIPKSIIQLSKLSCLYLSYCGKLQSLPKLP----CSLHKLHAHH   50 (149)
Q Consensus         2 L~L~~~~~~--~lP~si~~L~~L~~L~L~~c~~L~~lP~l~----~~L~~L~~~~   50 (149)
                      ++.+++++.  ++|..|-  .+|+.|+|+++. |..||.-.    .+|+.|++.+
T Consensus        13 v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~   64 (130)
T 3rfe_A           13 VDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGA   64 (130)
T ss_dssp             EECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCS
T ss_pred             EEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecC
Confidence            567778887  8886432  368899999888 88888643    5677777764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=91.83  E-value=0.19  Score=34.23  Aligned_cols=27  Identities=30%  Similarity=0.415  Sum_probs=11.7

Q ss_pred             EEccCCCccccchh-hcCCCCCCEEccc
Q 043750            2 LYLSKNNFERIPKS-IIQLSKLSCLYLS   28 (149)
Q Consensus         2 L~L~~~~~~~lP~s-i~~L~~L~~L~L~   28 (149)
                      |+|++|+|..||.. +..+.+|+.|+|+
T Consensus        36 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   63 (130)
T 3rfe_A           36 LVLTGNNLTALPPGLLDALPALRTAHLG   63 (130)
T ss_dssp             EECTTSCCSSCCTTTGGGCTTCCEEECC
T ss_pred             EECCCCcCCccChhhhhhccccCEEEec
Confidence            44444444444432 2344444444444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=91.36  E-value=0.071  Score=38.82  Aligned_cols=55  Identities=18%  Similarity=0.242  Sum_probs=37.1

Q ss_pred             CEEccCCC-ccc-cchhhcCC----CCCCEEcccccccccc-----CCCCCCCccEEcccccccccc
Q 043750            1 YLYLSKNN-FER-IPKSIIQL----SKLSCLYLSYCGKLQS-----LPKLPCSLHKLHAHHCTALES   56 (149)
Q Consensus         1 ~L~L~~~~-~~~-lP~si~~L----~~L~~L~L~~c~~L~~-----lP~l~~~L~~L~~~~C~sL~~   56 (149)
                      +|+|++|. +.. ==..|..+    ++|++|+|++|.++..     |-. .++|+.|++.+|..+..
T Consensus        89 ~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~-~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A           89 KIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH-FRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             EEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG-CTTCCEEEEESCTTCCC
T ss_pred             EEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc-CCCCCEEECCCCCCCCc
Confidence            37788874 432 00124443    3699999999997654     333 37899999999987764

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=89.95  E-value=0.11  Score=41.58  Aligned_cols=18  Identities=17%  Similarity=0.207  Sum_probs=8.2

Q ss_pred             hhhcCCCCCCEEcccccc
Q 043750           14 KSIIQLSKLSCLYLSYCG   31 (149)
Q Consensus        14 ~si~~L~~L~~L~L~~c~   31 (149)
                      ..+..++.|++|+|++|.
T Consensus       177 ~~L~~~~~L~~L~Ls~N~  194 (372)
T 3un9_A          177 EGLAGNTSVTHLSLLHTG  194 (372)
T ss_dssp             HHHHTCSSCCEEECTTSS
T ss_pred             HHHhcCCCcCEEeCCCCC
Confidence            333444444444444443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=89.93  E-value=0.062  Score=44.51  Aligned_cols=57  Identities=16%  Similarity=0.240  Sum_probs=30.8

Q ss_pred             CCCCCCEEcccccccccc--CCCC---CCCccEEcccccccccc--ccCCCCCCCCCCCCeeEecCCC
Q 043750           18 QLSKLSCLYLSYCGKLQS--LPKL---PCSLHKLHAHHCTALES--LSGLFPKSYESCPPRFELNGNY   78 (149)
Q Consensus        18 ~L~~L~~L~L~~c~~L~~--lP~l---~~~L~~L~~~~C~sL~~--~~~~~~~~~~~~~~~l~~~nC~   78 (149)
                      .+++|++|+|++|. +..  ++.+   .++|++|++.+|. +..  ++...  .....++.|++++|.
T Consensus       461 ~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~--~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          461 YSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAV--TKLPSLRYLWVQGYR  524 (592)
T ss_dssp             SCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHH--HHCSSCCEEEEESCB
T ss_pred             hCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHH--HhcCccCeeECcCCc
Confidence            36777777777775 432  2222   2567777777776 321  11100  012235677777776

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=89.21  E-value=0.39  Score=39.61  Aligned_cols=30  Identities=10%  Similarity=0.074  Sum_probs=17.2

Q ss_pred             EEccCCCcc-----ccchhhcCCCCCCEEcccccc
Q 043750            2 LYLSKNNFE-----RIPKSIIQLSKLSCLYLSYCG   31 (149)
Q Consensus         2 L~L~~~~~~-----~lP~si~~L~~L~~L~L~~c~   31 (149)
                      |+|++|.+.     .++..+.++++|+.|+|++|.
T Consensus       197 L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  231 (592)
T 3ogk_B          197 LNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE  231 (592)
T ss_dssp             EECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred             EEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence            556666553     344445566666666666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=87.31  E-value=0.58  Score=36.04  Aligned_cols=35  Identities=17%  Similarity=0.217  Sum_probs=24.1

Q ss_pred             EEccCCCccccch-hhcCCCCCC-EEccccccccccCCCC
Q 043750            2 LYLSKNNFERIPK-SIIQLSKLS-CLYLSYCGKLQSLPKL   39 (149)
Q Consensus         2 L~L~~~~~~~lP~-si~~L~~L~-~L~L~~c~~L~~lP~l   39 (149)
                      |+|.+| ++.|++ .+.++.+|+ .|.+.+  +++.|++-
T Consensus       255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~  291 (329)
T 3sb4_A          255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFG  291 (329)
T ss_dssp             EECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTT
T ss_pred             EECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchh
Confidence            566665 777766 477888888 888876  46666643

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=85.84  E-value=0.21  Score=39.86  Aligned_cols=51  Identities=20%  Similarity=0.178  Sum_probs=38.3

Q ss_pred             CEEccCCCcc-----ccchhhcCCCCCCEEccccccccccC-----CCC---CCCccEEcccccc
Q 043750            1 YLYLSKNNFE-----RIPKSIIQLSKLSCLYLSYCGKLQSL-----PKL---PCSLHKLHAHHCT   52 (149)
Q Consensus         1 ~L~L~~~~~~-----~lP~si~~L~~L~~L~L~~c~~L~~l-----P~l---~~~L~~L~~~~C~   52 (149)
                      +|+|++|.+.     .++..+...+.|+.|+|++|. +...     ...   .++|+.|++.+|.
T Consensus       187 ~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          187 HLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             EEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             EEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            4899999876     356778889999999999997 5532     221   1579999998874

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=80.03  E-value=2  Score=33.54  Aligned_cols=50  Identities=28%  Similarity=0.467  Sum_probs=27.4

Q ss_pred             ccccch-hhcCCCCCCEEccc-------------cccccccCCCCCCCccEEc---cccccccccccC
Q 043750            9 FERIPK-SIIQLSKLSCLYLS-------------YCGKLQSLPKLPCSLHKLH---AHHCTALESLSG   59 (149)
Q Consensus         9 ~~~lP~-si~~L~~L~~L~L~-------------~c~~L~~lP~l~~~L~~L~---~~~C~sL~~~~~   59 (149)
                      +..++. .+.++++|+.+.+.             +|.+|+++ .+|.+++.+.   ..+|++|+.+.-
T Consensus       274 i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i-~lp~~l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          274 VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV-TLPTALKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE-ECCTTCCEECTTTTTTCTTCCCCCC
T ss_pred             ceeccccccccccccccccccccccceehhhhhcCCCCCCEE-EcCccccEEHHHHhhCCCCCCEEEE
Confidence            334443 34566777776664             34444443 2344555553   347888887644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	149
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 1e-04
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 1   YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHC 51
            L +S N    +P       +L  L  S+   L  +P+LP +L +LH  + 
Sbjct: 288 ELNVSNNKLIELPALP---PRLERLIASFN-HLAEVPELPQNLKQLHVEYN 334

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	149
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.39
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.19
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.01
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.99
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.91
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.76
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.75
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.7
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.7
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.58
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.57
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.39
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.31
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.27
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.2
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.19
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.15
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.12
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.11
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.06
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.04
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.0
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	96.99
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	96.99
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	96.96
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.89
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.77
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	96.74
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	96.57
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	96.46
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	96.43
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.58
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	95.02
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	88.64
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	84.8
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	83.64

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.39  E-value=2.5e-07  Score=62.31  Aligned_cols=70  Identities=26%  Similarity=0.241  Sum_probs=44.8

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC---CCccEEccccccccccccCCCCCCCCCCCCeeEecC
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNG   76 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~n   76 (149)
                      .|+|++|++..+|. +.++.+|++|++++++ ++.+|...   .+|+.|++.+. .++.++...   .+..++.+++.+
T Consensus         2 ~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~-l~~lp~~~~~l~~L~~L~l~~N-~i~~l~~~~---~l~~L~~L~l~~   74 (124)
T d1dcea3           2 VLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDN-ALENVDGVA---NLPRLQELLLCN   74 (124)
T ss_dssp             EEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSS-CCCCCGGGT---TCSSCCEEECCS
T ss_pred             EEEcCCCCCCCCcc-cccCCCCCEEECCCCc-cCcchhhhhhhhcccccccccc-cccccCccc---cccccCeEECCC
Confidence            37788888887774 7888888888888776 77777532   56777777764 355554321   223344555544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.19  E-value=9.7e-07  Score=66.57  Aligned_cols=54  Identities=28%  Similarity=0.436  Sum_probs=38.2

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCCCCccEEccccccccccccC
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHCTALESLSG   59 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~~~L~~L~~~~C~sL~~~~~   59 (149)
                      +|+|++|++..+|.+   +.+|+.|+|++|. ++++|+.+.+|+.|++++|. |+.+|.
T Consensus       288 ~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~-L~~l~~~~~~L~~L~L~~N~-L~~lp~  341 (353)
T d1jl5a_         288 ELNVSNNKLIELPAL---PPRLERLIASFNH-LAEVPELPQNLKQLHVEYNP-LREFPD  341 (353)
T ss_dssp             EEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSSCCC
T ss_pred             EEECCCCccCccccc---cCCCCEEECCCCc-CCccccccCCCCEEECcCCc-CCCCCc
Confidence            367777777777753   4567777777775 77777777777777777775 777665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.01  E-value=4.1e-06  Score=56.06  Aligned_cols=73  Identities=21%  Similarity=0.203  Sum_probs=54.6

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccccccccccCCCCCCCCCCCCeeEec
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELN   75 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~   75 (149)
                      +|++++|.++.+|+++..+++|+.|+++++. ++.+|.+.  ++|+.|++.++. ++.++..........+..+++.
T Consensus        24 ~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~-i~~l~~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~~~~L~~L~l~   98 (124)
T d1dcea3          24 HLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVDGVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQ   98 (124)
T ss_dssp             EEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECT
T ss_pred             EEECCCCccCcchhhhhhhhccccccccccc-ccccCccccccccCeEECCCCc-cCCCCCchhhcCCCCCCEEECC
Confidence            4899999999999999999999999999987 99998764  689999998764 5544432222222334555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=2.9e-06  Score=59.35  Aligned_cols=57  Identities=16%  Similarity=0.159  Sum_probs=44.0

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccccccccccC
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHCTALESLSG   59 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C~sL~~~~~   59 (149)
                      +|+|++|+|..+|.....+++|+.|+|+++. +++++.+.  ++|+.|++.+|. ++.++.
T Consensus        22 ~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~-i~~l~~~~~l~~L~~L~ls~N~-i~~l~~   80 (162)
T d1a9na_          22 ELDLRGYKIPVIENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNR-ICRIGE   80 (162)
T ss_dssp             EEECTTSCCCSCCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSC-CCEECS
T ss_pred             EEECCCCCCCccCccccccccCCEEECCCCC-CCccCCcccCcchhhhhccccc-ccCCCc
Confidence            3788888888888766788888999998886 88887654  678888888775 555543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=5.2e-06  Score=57.98  Aligned_cols=75  Identities=16%  Similarity=0.115  Sum_probs=56.1

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCCC----CCCccEEccccccccccccCCCCCCCCCCCCeeEecC
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNG   76 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~n   76 (149)
                      +|+|++|.+.+++ .+..+++|+.|++++|+ +..+|.-    .++|+.|++.++. ++.++..........+..+++.+
T Consensus        45 ~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~  121 (162)
T d1a9na_          45 AIDFSDNEIRKLD-GFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILR  121 (162)
T ss_dssp             EEECCSSCCCEEC-CCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCS
T ss_pred             EEECCCCCCCccC-CcccCcchhhhhccccc-ccCCCccccccccccccceecccc-ccccccccccccccccchhhcCC
Confidence            4899999999996 59999999999999998 8888763    3689999998874 44444322222344567888887


Q ss_pred             CC
Q 043750           77 NY   78 (149)
Q Consensus        77 C~   78 (149)
                      |.
T Consensus       122 N~  123 (162)
T d1a9na_         122 NP  123 (162)
T ss_dssp             SG
T ss_pred             Cc
Confidence            73

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.76  E-value=2e-05  Score=59.02  Aligned_cols=46  Identities=30%  Similarity=0.407  Sum_probs=28.3

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCCCCCCccEEccccc
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLPCSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~~~L~~L~~~~C   51 (149)
                      |||+++++.++|+.   +++|++|+|++++ ++.+|+.+.+|+.|++.++
T Consensus        43 LdLs~~~L~~lp~~---~~~L~~L~Ls~N~-l~~lp~~~~~L~~L~l~~n   88 (353)
T d1jl5a_          43 LELNNLGLSSLPEL---PPHLESLVASCNS-LTELPELPQSLKSLLVDNN   88 (353)
T ss_dssp             EECTTSCCSCCCSC---CTTCSEEECCSSC-CSSCCCCCTTCCEEECCSS
T ss_pred             EEeCCCCCCCCCCC---CCCCCEEECCCCC-Ccccccchhhhhhhhhhhc
Confidence            66667766666653   3456666666553 6666666666666665543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=2e-05  Score=58.35  Aligned_cols=57  Identities=26%  Similarity=0.237  Sum_probs=45.3

Q ss_pred             CEEccCCCccccch-hhcCCCCCCEEccccccccccCCCC--CCCccEEccccccccccccC
Q 043750            1 YLYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKL--PCSLHKLHAHHCTALESLSG   59 (149)
Q Consensus         1 ~L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l--~~~L~~L~~~~C~sL~~~~~   59 (149)
                      +|+|++|+|..+|. .+.++++|+.|+|++++ +..+|..  .++|+.|++.++. ++.++.
T Consensus        35 ~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~-l~~l~~~~~l~~L~~L~Ls~N~-l~~~~~   94 (266)
T d1p9ag_          35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQ-LQSLPL   94 (266)
T ss_dssp             EEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSSC-CSSCCC
T ss_pred             EEECcCCcCCCcCHHHhhcccccccccccccc-cccccccccccccccccccccc-cccccc
Confidence            48999999998885 58999999999999986 8888864  3789999988764 444443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.70  E-value=1.6e-05  Score=59.90  Aligned_cols=52  Identities=33%  Similarity=0.409  Sum_probs=39.4

Q ss_pred             CEEccCCCcc---ccchhhcCCCCCCEEccccccccc-cCCCCC---CCccEEcccccc
Q 043750            1 YLYLSKNNFE---RIPKSIIQLSKLSCLYLSYCGKLQ-SLPKLP---CSLHKLHAHHCT   52 (149)
Q Consensus         1 ~L~L~~~~~~---~lP~si~~L~~L~~L~L~~c~~L~-~lP~l~---~~L~~L~~~~C~   52 (149)
                      +|+|+++++.   .+|++|++|++|++|+|++|.++. .+|...   .+|++|++.++.
T Consensus        54 ~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~  112 (313)
T d1ogqa_          54 NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN  112 (313)
T ss_dssp             EEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC
T ss_pred             EEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccc
Confidence            3788888765   588888888888888888876666 677643   578888877764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.70  E-value=2.5e-05  Score=56.38  Aligned_cols=68  Identities=19%  Similarity=0.205  Sum_probs=43.5

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccccccccccCCCCCCCCCCCCeeEec
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELN   75 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~   75 (149)
                      |++++|.+...+. ++++++|+.|+|++|+ +..+|.+.  ++|+.|++.+| .++.++...   .+..+..++++
T Consensus       156 L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n~-l~~l~~l~~l~~L~~L~Ls~N-~lt~i~~l~---~l~~L~~L~ls  225 (227)
T d1h6ua2         156 LSIGNAQVSDLTP-LANLSKLTTLKADDNK-ISDISPLASLPNLIEVHLKNN-QISDVSPLA---NTSNLFIVTLT  225 (227)
T ss_dssp             EECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECTTS-CCCBCGGGT---TCTTCCEEEEE
T ss_pred             ccccccccccchh-hcccccceecccCCCc-cCCChhhcCCCCCCEEECcCC-cCCCCcccc---cCCCCCEEEee
Confidence            5667776665554 7777888888887775 77776543  67788888777 466665421   23344555554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.58  E-value=2.8e-05  Score=58.50  Aligned_cols=58  Identities=24%  Similarity=0.334  Sum_probs=44.5

Q ss_pred             CEEccC-CCcc-ccchhhcCCCCCCEEccccccccccCCCC-C---CCccEEccccccccccccC
Q 043750            1 YLYLSK-NNFE-RIPKSIIQLSKLSCLYLSYCGKLQSLPKL-P---CSLHKLHAHHCTALESLSG   59 (149)
Q Consensus         1 ~L~L~~-~~~~-~lP~si~~L~~L~~L~L~~c~~L~~lP~l-~---~~L~~L~~~~C~sL~~~~~   59 (149)
                      +|+|++ |++. .+|++|++|++|++|+|++++ +..++.. .   .+|+.+++.++.....+|.
T Consensus        80 ~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~-l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~  143 (313)
T d1ogqa_          80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPDFLSQIKTLVTLDFSYNALSGTLPP  143 (313)
T ss_dssp             EEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEECCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred             ccccccccccccccccccccccccchhhhcccc-ccccccccccchhhhcccccccccccccCch
Confidence            488987 6787 899999999999999999998 5555432 2   5688888887765555554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.57  E-value=4.5e-05  Score=58.03  Aligned_cols=54  Identities=26%  Similarity=0.378  Sum_probs=29.3

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEcccccccccccc
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHCTALESLS   58 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C~sL~~~~   58 (149)
                      |++++|++..++. +..+++|+.|++++|+ ++.+|.+.  ++|+.|++.++ .++.++
T Consensus       312 L~ls~n~l~~l~~-l~~l~~L~~L~L~~n~-l~~l~~l~~l~~L~~L~l~~N-~l~~l~  367 (384)
T d2omza2         312 LTLYFNNISDISP-VSSLTKLQRLFFANNK-VSDVSSLANLTNINWLSAGHN-QISDLT  367 (384)
T ss_dssp             EECCSSCCSCCGG-GGGCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSS-CCCBCG
T ss_pred             EECCCCCCCCCcc-cccCCCCCEEECCCCC-CCCChhHcCCCCCCEEECCCC-cCCCCh
Confidence            4556666655543 5666666666666663 55555432  45666666544 344443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.39  E-value=0.00012  Score=55.48  Aligned_cols=71  Identities=15%  Similarity=0.170  Sum_probs=51.4

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccccccccccCCCCCCCCCCCCeeEecCC
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGN   77 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC   77 (149)
                      +|++++++++.| ++|..|++|++|+|++|+ ++.+|.+.  .+|++|++.+|. ++.++...   .+..+..+++.++
T Consensus        48 ~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~-l~~l~~l~~L~~L~~L~L~~n~-i~~i~~l~---~l~~L~~L~~~~~  120 (384)
T d2omza2          48 TLQADRLGIKSI-DGVEYLNNLTQINFSNNQ-LTDITPLKNLTKLVDILMNNNQ-IADITPLA---NLTNLTGLTLFNN  120 (384)
T ss_dssp             EEECCSSCCCCC-TTGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCCGGGT---TCTTCCEEECCSS
T ss_pred             EEECCCCCCCCc-cccccCCCCCEEeCcCCc-CCCCccccCCcccccccccccc-cccccccc---ccccccccccccc
Confidence            478899999988 479999999999999986 99888653  789999998885 44444322   2333445555443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.31  E-value=0.00019  Score=51.29  Aligned_cols=71  Identities=18%  Similarity=0.170  Sum_probs=46.7

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCCC--CCCccEEccccccccccccCCCCCCCCCCCCeeEecCCC
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKL--PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGNY   78 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l--~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC~   78 (149)
                      |++++|.+..++ +|..+++|+.|+|++|+ +..++..  ..+|+.|++.+|. ++.++...   .+..++.+++.+|.
T Consensus        51 L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~-i~~l~~~~~l~~L~~L~l~~n~-i~~l~~l~---~l~~L~~L~l~~~~  123 (210)
T d1h6ta2          51 IIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKPLANLKNLGWLFLDENK-VKDLSSLK---DLKKLKSLSLEHNG  123 (210)
T ss_dssp             EECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCGGGGT---TCTTCCEEECTTSC
T ss_pred             EECcCCCCCCch-hHhhCCCCCEEeCCCcc-ccCccccccCcccccccccccc-cccccccc---cccccccccccccc
Confidence            677788777776 47888888888888876 7777654  3678888887763 55554322   22334566665554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.00019  Score=51.64  Aligned_cols=59  Identities=15%  Similarity=0.146  Sum_probs=43.7

Q ss_pred             CEEccCCCccccch-hhcCCCCCCEEccccccccccCCCCC----CCccEEccccccccccccC
Q 043750            1 YLYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKLP----CSLHKLHAHHCTALESLSG   59 (149)
Q Consensus         1 ~L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l~----~~L~~L~~~~C~sL~~~~~   59 (149)
                      +|+|++|+|..+|. .+.++++|++|+|+++.....+|...    .+++.+.+..|..+..++.
T Consensus        33 ~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~   96 (242)
T d1xwdc1          33 ELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP   96 (242)
T ss_dssp             EEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECT
T ss_pred             EEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccc
Confidence            48899999999987 47899999999999988666665422    4667777666666655443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.20  E-value=0.00011  Score=52.75  Aligned_cols=48  Identities=17%  Similarity=0.200  Sum_probs=40.1

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEcccc
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHH   50 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~   50 (149)
                      +|+|++|.+..+|. ++++++|++|+|++|+ +..+|.+.  .+|+.|++.+
T Consensus       177 ~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~-lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         177 TLKADDNKISDISP-LASLPNLIEVHLKNNQ-ISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             EEECCSSCCCCCGG-GGGCTTCCEEECTTSC-CCBCGGGTTCTTCCEEEEEE
T ss_pred             ecccCCCccCCChh-hcCCCCCCEEECcCCc-CCCCcccccCCCCCEEEeeC
Confidence            48999999999986 9999999999999996 99988643  6777777653

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.19  E-value=0.00015  Score=53.99  Aligned_cols=75  Identities=17%  Similarity=0.099  Sum_probs=55.0

Q ss_pred             CEEccCCCccccc-hhhcCCCCCCEEccccccccccCCCCC---CCccEEccccccccccccCCC-C----CCCCCCCCe
Q 043750            1 YLYLSKNNFERIP-KSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLSGLF-P----KSYESCPPR   71 (149)
Q Consensus         1 ~L~L~~~~~~~lP-~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~~~~-~----~~~~~~~~~   71 (149)
                      +|++++|.+..++ ..+.++++|++|+|++|+ +..+|+..   ++|++|+++++ .++.++... .    ......+..
T Consensus       199 ~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~-L~~lp~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~  276 (305)
T d1xkua_         199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSG  276 (305)
T ss_dssp             EEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSE
T ss_pred             ccccccccccccccccccccccceeeeccccc-ccccccccccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCE
Confidence            3788999998874 568999999999999996 99998643   68999999997 487776421 1    112234567


Q ss_pred             eEecCC
Q 043750           72 FELNGN   77 (149)
Q Consensus        72 l~~~nC   77 (149)
                      +++.+.
T Consensus       277 L~L~~N  282 (305)
T d1xkua_         277 VSLFSN  282 (305)
T ss_dssp             EECCSS
T ss_pred             EECCCC
Confidence            777553

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.15  E-value=0.00039  Score=49.06  Aligned_cols=74  Identities=15%  Similarity=0.147  Sum_probs=48.7

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccccccccccCCCCCCCCCCCCeeEecCCC
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGNY   78 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC~   78 (149)
                      +|+++++++..++ +|..+++|++|++++|+ +..++.+.  .+|+.|++.+|. +..++..   .....+..+++.+|.
T Consensus        44 ~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~-l~~~~~l~~l~~L~~L~l~~n~-~~~~~~l---~~l~~L~~L~l~~~~  117 (199)
T d2omxa2          44 TLQADRLGIKSID-GVEYLNNLTQINFSNNQ-LTDITPLKNLTKLVDILMNNNQ-IADITPL---ANLTNLTGLTLFNNQ  117 (199)
T ss_dssp             EEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCCGGG---TTCTTCSEEECCSSC
T ss_pred             EEECCCCCCCCcc-ccccCCCcCcCcccccc-ccCcccccCCcccccccccccc-ccccccc---ccccccccccccccc
Confidence            3788888888875 48888889999998885 77777543  578888887764 3333321   122334556665554


Q ss_pred             CC
Q 043750           79 NL   80 (149)
Q Consensus        79 ~L   80 (149)
                      ..
T Consensus       118 ~~  119 (199)
T d2omxa2         118 IT  119 (199)
T ss_dssp             CC
T ss_pred             cc
Confidence            44

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.12  E-value=0.00026  Score=52.64  Aligned_cols=57  Identities=23%  Similarity=0.284  Sum_probs=43.7

Q ss_pred             CEEccCCCccccch-hhcCCCCCCEEccccccccccC-CCCC---CCccEEccccccccccccC
Q 043750            1 YLYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSL-PKLP---CSLHKLHAHHCTALESLSG   59 (149)
Q Consensus         1 ~L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~l-P~l~---~~L~~L~~~~C~sL~~~~~   59 (149)
                      +|+|++|+|..+|+ ++.++++|+.|++++|. +..+ |...   .+|+.|++.++. ++.+|.
T Consensus        35 ~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~-~~~i~~~~f~~l~~L~~L~l~~n~-l~~l~~   96 (305)
T d1xkua_          35 LLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKNQ-LKELPE   96 (305)
T ss_dssp             EEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSC-CSBCCS
T ss_pred             EEECcCCcCCCcChhHhhcccccccccccccc-ccccchhhhhCCCccCEecccCCc-cCcCcc
Confidence            48899999999986 58899999999999998 5555 4433   577888888773 666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.11  E-value=0.00043  Score=48.81  Aligned_cols=71  Identities=20%  Similarity=0.279  Sum_probs=50.5

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccccccccccCCCCCCCCCCCCeeEecCC
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNGN   77 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~nC   77 (149)
                      +|+|++|.+..++. ++++++|++|++++|. +..+|.+.  .+|+.|++.+|.... ++..   ..+..+..+++.+|
T Consensus        66 ~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~---~~l~~L~~L~l~~n  138 (199)
T d2omxa2          66 QINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADITPLANLTNLTGLTLFNNQITD-IDPL---KNLTNLNRLELSSN  138 (199)
T ss_dssp             EEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEECCSSCCCC-CGGG---TTCTTCSEEECCSS
T ss_pred             cCccccccccCccc-ccCCcccccccccccc-ccccccccccccccccccccccccc-cccc---chhhhhHHhhhhhh
Confidence            48999999998886 9999999999999987 77777653  678888888775433 2211   12233456666554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.06  E-value=0.00078  Score=47.12  Aligned_cols=49  Identities=20%  Similarity=0.212  Sum_probs=24.0

Q ss_pred             EEccCCCccc-cc-hhhcCCCCCCEEccccccccccCCC-C---CCCccEEccccc
Q 043750            2 LYLSKNNFER-IP-KSIIQLSKLSCLYLSYCGKLQSLPK-L---PCSLHKLHAHHC   51 (149)
Q Consensus         2 L~L~~~~~~~-lP-~si~~L~~L~~L~L~~c~~L~~lP~-l---~~~L~~L~~~~C   51 (149)
                      |+|++|.|.. ++ ..+.++++|+.|+|+++. +..++. .   ..+|+.|++.+.
T Consensus        34 L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~-i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEeCCCCCcccccccccCCCceEeeeeccccc-cccccccccccccccceeeeccc
Confidence            5566666643 32 234556666666665555 333332 1   134555555444

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00032  Score=50.32  Aligned_cols=57  Identities=26%  Similarity=0.320  Sum_probs=30.0

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCCC--C--CCccEEccccccccccccC
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKL--P--CSLHKLHAHHCTALESLSG   59 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l--~--~~L~~L~~~~C~sL~~~~~   59 (149)
                      |++++|.+..++.......++..+....+.+++.+|..  .  ++|++|++.++. ++.+|.
T Consensus       158 L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~  218 (242)
T d1xwdc1         158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPS  218 (242)
T ss_dssp             EECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC-CCCCCS
T ss_pred             eecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCc-CCccCH
Confidence            45556666666655555555555443333346666542  1  456666665543 444443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.00  E-value=0.00026  Score=50.50  Aligned_cols=50  Identities=26%  Similarity=0.392  Sum_probs=43.1

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEcccccc
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHCT   52 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C~   52 (149)
                      +|+|++|+|..++. ++.+++|++|++++|+ ++.+|.+.  ++|+.|++.+|.
T Consensus        72 ~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~l~~~~  123 (210)
T d1h6ta2          72 KLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHNG  123 (210)
T ss_dssp             EEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTSC
T ss_pred             EEeCCCccccCccc-cccCcccccccccccc-cccccccccccccccccccccc
Confidence            48999999999985 8999999999999987 88888654  689999998875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.99  E-value=0.00024  Score=49.92  Aligned_cols=73  Identities=14%  Similarity=0.073  Sum_probs=54.2

Q ss_pred             CEEccCCCccccch-hhcCCCCCCEEccccccccccCCCCC----CCccEEccccccccccccCCCCCCCCCCCCeeEec
Q 043750            1 YLYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKLP----CSLHKLHAHHCTALESLSGLFPKSYESCPPRFELN   75 (149)
Q Consensus         1 ~L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l~----~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~   75 (149)
                      +|+|++|++..++. .+..+++|++|+|++++ ++.+|.-.    .+|++|++.+.. |+.++... ......++.+++.
T Consensus        58 ~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~-l~~l~~~~F~~l~~L~~L~L~~N~-l~~i~~~~-f~~l~~L~~l~L~  134 (192)
T d1w8aa_          58 KLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGS-FEHLNSLTSLNLA  134 (192)
T ss_dssp             EEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSC-CCEECTTS-STTCTTCCEEECT
T ss_pred             eeeccccccccccccccccccccceeeecccc-ccccCHHHHhCCCcccccccCCcc-ccccCHHH-hcCCccccccccc
Confidence            48999999987654 68889999999999997 88887632    689999998864 77776531 1123456677765


Q ss_pred             C
Q 043750           76 G   76 (149)
Q Consensus        76 n   76 (149)
                      +
T Consensus       135 ~  135 (192)
T d1w8aa_         135 S  135 (192)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00069  Score=49.98  Aligned_cols=57  Identities=21%  Similarity=0.315  Sum_probs=39.7

Q ss_pred             CEEccCCCccccch-hhcCCCCCCEEccccccccccCCCCC----CCccEEcccccccccccc
Q 043750            1 YLYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKLP----CSLHKLHAHHCTALESLS   58 (149)
Q Consensus         1 ~L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l~----~~L~~L~~~~C~sL~~~~   58 (149)
                      +|+|++|+|..+|. ++.++++|++|++++++ +..++...    ..++.+.......++.++
T Consensus        36 ~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~-l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~   97 (284)
T d1ozna_          36 RIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVD   97 (284)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCC
T ss_pred             EEECcCCcCCCCCHHHhhcccccccccccccc-cccccccccccccccccccccccccccccc
Confidence            48899999999986 58999999999998876 66665432    345555554444444443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00068  Score=49.74  Aligned_cols=50  Identities=30%  Similarity=0.254  Sum_probs=38.7

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC---CCccEEcccccc
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCT   52 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~   52 (149)
                      +|+|++|++..+|. ++.+++|++|+|++++ +..+|...   .+|+.|++.++.
T Consensus        59 ~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~l~~~~  111 (266)
T d1p9ag_          59 QLNLDRAELTKLQV-DGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNR  111 (266)
T ss_dssp             EEECTTSCCCEEEC-CSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSC
T ss_pred             cccccccccccccc-cccccccccccccccc-ccccccccccccccccccccccc
Confidence            47888888888875 6788889999998886 77776654   567788877664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.0005  Score=47.13  Aligned_cols=71  Identities=21%  Similarity=0.213  Sum_probs=52.2

Q ss_pred             CEEccCCC-ccccch-hhcCCCCCCEEccccccccccCCCC----CCCccEEccccccccccccCCCCCCCCCCCCeeEe
Q 043750            1 YLYLSKNN-FERIPK-SIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFEL   74 (149)
Q Consensus         1 ~L~L~~~~-~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~   74 (149)
                      +|++++++ +..++. .+.++++|+.|+|++++ |+.|+.-    ..+|+.|++++.. |+.+|...-  ....+..+++
T Consensus        35 ~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~--~~~~l~~L~L  110 (156)
T d2ifga3          35 ELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTV--QGLSLQELVL  110 (156)
T ss_dssp             EEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTT--CSCCCCEEEC
T ss_pred             eeecCCCccccccCchhhccccccCcceeeccc-cCCcccccccccccccceeccCCC-CcccChhhh--cccccccccc
Confidence            37787764 899975 58999999999999998 9999753    2689999998765 777776321  1123556666


Q ss_pred             c
Q 043750           75 N   75 (149)
Q Consensus        75 ~   75 (149)
                      .
T Consensus       111 ~  111 (156)
T d2ifga3         111 S  111 (156)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.0014  Score=44.67  Aligned_cols=73  Identities=16%  Similarity=0.092  Sum_probs=53.9

Q ss_pred             EEccCCCccccchhhcCCCCCCEEccccccccccCCCC----CCCccEEccccccccccccCCCCCCCCCCCCeeEecC
Q 043750            2 LYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCTALESLSGLFPKSYESCPPRFELNG   76 (149)
Q Consensus         2 L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~~n   76 (149)
                      ++.+++++..+|..+..+++|+.|++++...++.++.-    ..+|+.|++.++. |+.++... ......++.|++++
T Consensus        13 l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~-f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDA-FHFTPRLSRLNLSF   89 (156)
T ss_dssp             EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTG-GGSCSCCCEEECCS
T ss_pred             EEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccc-cCCccccc-ccccccccceeccC
Confidence            67788889999999999999999999988889998853    2689999998874 77765421 11223445555544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=96.74  E-value=7e-05  Score=53.56  Aligned_cols=42  Identities=19%  Similarity=0.237  Sum_probs=24.0

Q ss_pred             ccccchhhcCCCCCCEEccccccccccCCCCC--CCccEEccccc
Q 043750            9 FERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP--CSLHKLHAHHC   51 (149)
Q Consensus         9 ~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~--~~L~~L~~~~C   51 (149)
                      +..+|.++..|++|++|+|++++ ++.++.+.  .+|+.|++.+|
T Consensus        37 i~~l~~sl~~L~~L~~L~Ls~n~-I~~i~~l~~l~~L~~L~Ls~N   80 (198)
T d1m9la_          37 IEKMDATLSTLKACKHLALSTNN-IEKISSLSGMENLRILSLGRN   80 (198)
T ss_dssp             CCCCHHHHHHTTTCCEEECSEEE-ESCCCCHHHHTTCCEEECCEE
T ss_pred             hhhhhhHHhcccccceeECcccC-CCCcccccCCccccChhhccc
Confidence            45555566666666666666555 55555432  45666666555

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.00014  Score=54.46  Aligned_cols=80  Identities=21%  Similarity=0.183  Sum_probs=41.7

Q ss_pred             CEEccCCCcc--ccchhhcCCCCCCEEccccccc----cccCCCCCCCccEEccccccccccccCCCCCCCCCCCCeeEe
Q 043750            1 YLYLSKNNFE--RIPKSIIQLSKLSCLYLSYCGK----LQSLPKLPCSLHKLHAHHCTALESLSGLFPKSYESCPPRFEL   74 (149)
Q Consensus         1 ~L~L~~~~~~--~lP~si~~L~~L~~L~L~~c~~----L~~lP~l~~~L~~L~~~~C~sL~~~~~~~~~~~~~~~~~l~~   74 (149)
                      +|||+++.+.  .++.-+.++++|++|+|++|.-    +..+... ++|+.|++.+|..+....-..-......++.|++
T Consensus        50 ~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~-~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~l  128 (284)
T d2astb2          50 HMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL  128 (284)
T ss_dssp             EEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTC-TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEEC
T ss_pred             EEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcC-CCCcCccccccccccccccchhhHHHHhcccccc
Confidence            3667766543  3555566777777777777741    1122222 4677777777765532110000001223556666


Q ss_pred             cCCCCCc
Q 043750           75 NGNYNLD   81 (149)
Q Consensus        75 ~nC~~L~   81 (149)
                      ++|.++.
T Consensus       129 s~c~~~~  135 (284)
T d2astb2         129 SWCFDFT  135 (284)
T ss_dssp             CCCTTCC
T ss_pred             ccccccc
Confidence            6666654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0029  Score=46.41  Aligned_cols=50  Identities=30%  Similarity=0.507  Sum_probs=33.7

Q ss_pred             EEccCCCccccch-hhcCCCCCCEEccccccccccCCCC----CCCccEEcccccc
Q 043750            2 LYLSKNNFERIPK-SIIQLSKLSCLYLSYCGKLQSLPKL----PCSLHKLHAHHCT   52 (149)
Q Consensus         2 L~L~~~~~~~lP~-si~~L~~L~~L~L~~c~~L~~lP~l----~~~L~~L~~~~C~   52 (149)
                      +++++|.++.+|. .+..+.+|+.|+++++. ++.+|..    ..+|+.+++.++.
T Consensus       134 l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~-l~~l~~~~f~~l~~L~~l~l~~N~  188 (284)
T d1ozna_         134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNR  188 (284)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred             hhhccccccccChhHhccccchhhcccccCc-ccccchhhhccccccchhhhhhcc
Confidence            5677777777754 46677777777777775 7766542    1567777776664

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=96.43  E-value=0.0007  Score=48.07  Aligned_cols=55  Identities=31%  Similarity=0.343  Sum_probs=45.9

Q ss_pred             CEEccCCCccccchhhcCCCCCCEEccccccccccCCCCC---CCccEEcccccccccccc
Q 043750            1 YLYLSKNNFERIPKSIIQLSKLSCLYLSYCGKLQSLPKLP---CSLHKLHAHHCTALESLS   58 (149)
Q Consensus         1 ~L~L~~~~~~~lP~si~~L~~L~~L~L~~c~~L~~lP~l~---~~L~~L~~~~C~sL~~~~   58 (149)
                      +|+|++|+|..++ .+..+++|+.|+|++|. +..+|.+.   .+|+.|++.++ .++.++
T Consensus        52 ~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N-~i~~l~  109 (198)
T d1m9la_          52 HLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYN-QIASLS  109 (198)
T ss_dssp             EEECSEEEESCCC-CHHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEE-ECCCHH
T ss_pred             eeECcccCCCCcc-cccCCccccChhhcccc-cccccccccccccccccccccc-cccccc
Confidence            4899999999997 59999999999999997 89998764   57999999876 355544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.58  E-value=0.0011  Score=45.37  Aligned_cols=34  Identities=24%  Similarity=0.188  Sum_probs=18.7

Q ss_pred             cCCCCCCEEccccccccccCCCCC------CCccEEccccc
Q 043750           17 IQLSKLSCLYLSYCGKLQSLPKLP------CSLHKLHAHHC   51 (149)
Q Consensus        17 ~~L~~L~~L~L~~c~~L~~lP~l~------~~L~~L~~~~C   51 (149)
                      .+++.|+.|+|++++ +..++.++      ++|+.|++++.
T Consensus        62 ~~~~~L~~L~Ls~N~-i~~l~~~~~~~~~l~~L~~L~Ls~N  101 (162)
T d1koha1          62 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGN  101 (162)
T ss_dssp             HHCTTCCCCCCCSSC-CCCCSGGGTHHHHSTTCCCCCCTTS
T ss_pred             HhCCCCCEeeCCCcc-ccCCchhHHHHhhCCcccccccccC
Confidence            345666666666665 55554432      45566665553

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.0025  Score=47.26  Aligned_cols=54  Identities=26%  Similarity=0.332  Sum_probs=37.2

Q ss_pred             CEEccCCCcc-ccchhhcCCCCCCEEcccccccccc--CCCC---CCCccEEcccccccc
Q 043750            1 YLYLSKNNFE-RIPKSIIQLSKLSCLYLSYCGKLQS--LPKL---PCSLHKLHAHHCTAL   54 (149)
Q Consensus         1 ~L~L~~~~~~-~lP~si~~L~~L~~L~L~~c~~L~~--lP~l---~~~L~~L~~~~C~sL   54 (149)
                      +|+|+++.+. ..+..+.++++|++|+|++|..+..  +..+   .++|+.|++.+|..+
T Consensus        75 ~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~  134 (284)
T d2astb2          75 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF  134 (284)
T ss_dssp             EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC
T ss_pred             cccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccccccccccc
Confidence            3677787764 5566788888888888888877642  2222   257888888877544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.64  E-value=0.13  Score=38.37  Aligned_cols=30  Identities=17%  Similarity=0.121  Sum_probs=16.3

Q ss_pred             EEccCCCcc-----ccchhhcCCCCCCEEcccccc
Q 043750            2 LYLSKNNFE-----RIPKSIIQLSKLSCLYLSYCG   31 (149)
Q Consensus         2 L~L~~~~~~-----~lP~si~~L~~L~~L~L~~c~   31 (149)
                      |+|++|.+.     .|...+..+++|+.|+|++|.
T Consensus        32 L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~   66 (460)
T d1z7xw1          32 VRLDDCGLTEARCKDISSALRVNPALAELNLRSNE   66 (460)
T ss_dssp             EEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC
T ss_pred             EEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCc
Confidence            455555443     334445566666666666554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.80  E-value=0.19  Score=37.53  Aligned_cols=51  Identities=25%  Similarity=0.318  Sum_probs=36.6

Q ss_pred             CEEccCCCcc-----ccchhhc-CCCCCCEEcccccccccc-----CCCCC---CCccEEcccccc
Q 043750            1 YLYLSKNNFE-----RIPKSII-QLSKLSCLYLSYCGKLQS-----LPKLP---CSLHKLHAHHCT   52 (149)
Q Consensus         1 ~L~L~~~~~~-----~lP~si~-~L~~L~~L~L~~c~~L~~-----lP~l~---~~L~~L~~~~C~   52 (149)
                      +|+|++|.+.     .++..+. ..+.|++|+|++|. +..     |.+..   ++|++|++.+..
T Consensus       344 ~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~N~  408 (460)
T d1z7xw1         344 ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC  408 (460)
T ss_dssp             EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             hhheeeecccCcccchhhhhhhcccCCCCEEECCCCC-CChHHHHHHHHHHhcCCCCCEEECCCCc
Confidence            4899999874     4666665 46789999999996 643     32221   679999998763

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.64  E-value=0.031  Score=37.76  Aligned_cols=38  Identities=32%  Similarity=0.294  Sum_probs=30.0

Q ss_pred             CEEccCCCccccc---hhhcCCCCCCEEccccccccccCCCC
Q 043750            1 YLYLSKNNFERIP---KSIIQLSKLSCLYLSYCGKLQSLPKL   39 (149)
Q Consensus         1 ~L~L~~~~~~~lP---~si~~L~~L~~L~L~~c~~L~~lP~l   39 (149)
                      +|+|++|++..++   ..+..+++|+.|+|+++. +.+++++
T Consensus        69 ~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~l  109 (162)
T d1koha1          69 SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSEREL  109 (162)
T ss_dssp             CCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSC-CCCGGGH
T ss_pred             EeeCCCccccCCchhHHHHhhCCcccccccccCc-cccchhh
Confidence            4789999887664   457789999999999988 7777654