Citrus Sinensis ID: 043754

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320
MLDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKILTKVISMASIIDDIYDAYGTIEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFEKDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSSFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQHGVSEEEAVKVFREKVGNAWKDINEELMRPPVVPMPLLERVLNLARLMDVLYQNNDSYTNPHLMKDHVAALLKDPVFFED
cccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcHHHHHHHHHccccccccHHHHHHccccccHHHHHHHHHHHcccccccHHHHHccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccc
cHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcHHHcHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcHHHHHHHHHHHHHcHHHcccccHHHHHHHHHHHHcccccccc
MLDFNILQKQHQEELRDIVRWWknfdvpnklpfirdRVVEGYFWILGVYFEPKFLLARKILTKVISMASIIDDIYDAYGTIEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFEKDLASkgilyglpfaKESMKILVRSYIIEArwcdqqyvpTMEEYMRVALLSCGYLLLstssflgmediVTKEAFewvsgnpkivQASSIICRLMDDIVSHKFEQQRGHVASAVECYmkqhgvseEEAVKVFREKVGNAWKDINeelmrppvvpmplLERVLNLARLMDVLYqnndsytnphlMKDHVAALlkdpvffed
mldfnilqkQHQEELRDIVRWWKNfdvpnklpfirDRVVEGYFWILGVYFEPKFLLARKILTKVISMASIIDDIYDAYGTIEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFEKDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSSFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQHGVSEEEAVKVFREKVGNAWKdineelmrppvvpMPLLERVLNLARLMDVLYQNNDSYTNPHLMKDHVAALLKDPVFFED
MLDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKILTKVISMASIIDDIYDAYGTIEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFEKDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSSFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQHGVSEEEAVKVFREKVGNAWKDINeelmrppvvpmpllervlNLARLMDVLYQNNDSYTNPHLMKDHVAALLKDPVFFED
************EELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKILTKVISMASIIDDIYDAYGTIEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFEKDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSSFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQHGVSEEEAVKVFREKVGNAWKDINEELMRPPVVPMPLLERVLNLARLMDVLYQNNDSYTNPHLMKDHVAALLKDPVF***
MLDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKILTKVISMASIIDDIYDAYGTIEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFEKDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSSFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQHGVSEEEAVKVFREKVGNAWKDINEELMRPPVVPMPLLERVLNLARLMDVLYQNNDSYTNPHLMKDHVAALLKDPVFFE*
MLDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKILTKVISMASIIDDIYDAYGTIEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFEKDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSSFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQHGVSEEEAVKVFREKVGNAWKDINEELMRPPVVPMPLLERVLNLARLMDVLYQNNDSYTNPHLMKDHVAALLKDPVFFED
MLDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKILTKVISMASIIDDIYDAYGTIEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFEKDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSSFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQHGVSEEEAVKVFREKVGNAWKDINEELMRPPVVPMPLLERVLNLARLMDVLYQNNDSYTNPHLMKDHVAALLKDPVFFE*
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MLDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKILTKVISMASIIDDIYDAYGTIEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFEKDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTSSFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQHGVSEEEAVKVFREKVGNAWKDINEELMRPPVVPMPLLERVLNLARLMDVLYQNNDSYTNPHLMKDHVAALLKDPVFFED
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query320 2.2.26 [Sep-21-2011]
Q6Q3H3557 (-)-germacrene D synthase yes no 0.984 0.565 0.639 1e-118
E3W207559 Sesquiterpene synthase OS N/A no 0.984 0.563 0.585 1e-113
F6M8H7562 Probable sesquiterpene sy N/A no 0.984 0.560 0.579 1e-113
B5A435559 Sesquiterpene synthase OS N/A no 0.984 0.563 0.582 1e-113
F6M8H5562 Probable sesquiterpene sy N/A no 0.984 0.560 0.579 1e-111
F6M8H4559 Probable sesquiterpene sy N/A no 0.984 0.563 0.569 1e-109
Q6Q3H2556 Valencene synthase OS=Vit no no 0.984 0.566 0.585 1e-109
F6M8H6562 Probable sesquiterpene sy N/A no 0.984 0.560 0.560 1e-108
E3W208562 Sesquiterpene synthase OS N/A no 0.984 0.560 0.560 1e-107
Q8SA63548 Beta-caryophyllene syntha N/A no 0.984 0.574 0.544 1e-100
>sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1 Back     alignment and function desciption
 Score =  426 bits (1095), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/316 (63%), Positives = 251/316 (79%), Gaps = 1/316 (0%)

Query: 2   LDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKIL 61
           LDFN+LQK HQ+EL DI  WWK+ D  +KLPF RDRVVE YFWILGVYFEP+F  AR+IL
Sbjct: 240 LDFNLLQKLHQKELSDISAWWKDLDFAHKLPFARDRVVECYFWILGVYFEPQFFFARRIL 299

Query: 62  TKVISMASIIDDIYDAYGTIEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFE 121
           TKVI+M SIIDDIYD YGT+EELELF  A+ERWD+SAID LPEY+++CY ALL  YSE E
Sbjct: 300 TKVIAMTSIIDDIYDVYGTLEELELFTEAVERWDISAIDQLPEYMRVCYQALLYVYSEIE 359

Query: 122 KDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTS 181
           +++A +G  Y L +AKE+MK  VR+Y  EA+W   Q +PTMEEYM VAL++  Y +L+T+
Sbjct: 360 EEMAKEGRSYRLYYAKEAMKNQVRAYYEEAKWLQVQQIPTMEEYMPVALVTSAYSMLATT 419

Query: 182 SFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQH 241
           SF+GM D VTKE+F+W+   PKIV+AS+I+CRLMDD+V HKFEQ+RGHVASAVECYMKQH
Sbjct: 420 SFVGMGDAVTKESFDWIFSKPKIVRASAIVCRLMDDMVFHKFEQKRGHVASAVECYMKQH 479

Query: 242 GVSEEEAVKVFREKVGNAWKDINEELMRPPVVPMPLLERVLNLARLMDVLYQNNDSYTN- 300
           G SE+E    F + V  AWKDINEE + P  VPMP+L RVLNLAR++DV+Y+N D YT+ 
Sbjct: 480 GASEQETPNEFPQPVREAWKDINEECLIPTAVPMPILMRVLNLARVIDVIYKNEDGYTHF 539

Query: 301 PHLMKDHVAALLKDPV 316
             ++KD V ++L DPV
Sbjct: 540 GAVLKDFVTSMLIDPV 555
Involved in the biosynthesis of germacrene D. Can use farnesyl diphosphate as substrate, but not geranyl diphosphate or geranylgeranyl diphosphate. Produces mainly (-)-germacrene D along with gamma-cadinene.
Vitis vinifera (taxid: 29760)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 7EC: 5
>sp|E3W207|SAUSS_SANAS Sesquiterpene synthase OS=Santalum austrocaledonicum PE=2 SV=1 Back     alignment and function description
>sp|F6M8H7|SMST_SANMU Probable sesquiterpene synthase OS=Santalum murrayanum GN=STPS PE=3 SV=1 Back     alignment and function description
>sp|B5A435|STPS1_SANAL Sesquiterpene synthase OS=Santalum album PE=1 SV=1 Back     alignment and function description
>sp|F6M8H5|SAUST_SANAS Probable sesquiterpene synthase OS=Santalum austrocaledonicum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description
>sp|F6M8H4|SAST_SANAL Probable sesquiterpene synthase OS=Santalum album GN=SesquiTPS1 PE=3 SV=1 Back     alignment and function description
>sp|Q6Q3H2|TPSVS_VITVI Valencene synthase OS=Vitis vinifera GN=ValCS PE=1 SV=1 Back     alignment and function description
>sp|F6M8H6|SPIST_SANSP Probable sesquiterpene synthase OS=Santalum spicatum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description
>sp|E3W208|SPISS_SANSP Sesquiterpene synthase OS=Santalum spicatum PE=2 SV=1 Back     alignment and function description
>sp|Q8SA63|CARS_ARTAN Beta-caryophyllene synthase OS=Artemisia annua GN=QHS1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query320
359493937 557 PREDICTED: (-)-germacrene D synthase [Vi 0.984 0.565 0.642 1e-119
147828675 557 hypothetical protein VITISV_013313 [Viti 0.984 0.565 0.642 1e-118
147856860 557 hypothetical protein VITISV_030783 [Viti 0.984 0.565 0.639 1e-118
41058926 561 (-)-germacrene D synthase [Populus trich 0.984 0.561 0.617 1e-117
347664489 557 (E)-beta-caryophyllene synthase [Vitis v 0.984 0.565 0.639 1e-117
75223414 557 RecName: Full=(-)-germacrene D synthase 0.984 0.565 0.639 1e-117
336318889 561 terpene synthase 1 [Populus trichocarpa] 0.984 0.561 0.613 1e-116
302143186365 unnamed protein product [Vitis vinifera] 0.971 0.852 0.639 1e-116
315134533 556 sesquiterpene synthase [Toona sinensis] 0.984 0.566 0.623 1e-116
224126255 561 predicted protein [Populus trichocarpa] 0.984 0.561 0.613 1e-116
>gi|359493937|ref|XP_003634696.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|302143188|emb|CBI20483.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 203/316 (64%), Positives = 254/316 (80%), Gaps = 1/316 (0%)

Query: 2   LDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKIL 61
           LDFN+LQK HQ+EL DI  WWK+ D  +KLPF RDRVVE YFWILGVYFEP+F  AR+IL
Sbjct: 240 LDFNLLQKLHQKELSDISAWWKDLDFAHKLPFARDRVVECYFWILGVYFEPQFFFARRIL 299

Query: 62  TKVISMASIIDDIYDAYGTIEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFE 121
           TKVI+M SIIDDIYD YGT+EELELF  A+ERWD+SAID LPEY+++CY ALL  YSE E
Sbjct: 300 TKVIAMTSIIDDIYDVYGTLEELELFTEAVERWDISAIDQLPEYMRVCYQALLYVYSEIE 359

Query: 122 KDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTS 181
           +++A +G  Y L +AKE+MK  VR+Y  EA+W   Q +PTMEEYM VAL++  Y +L+T+
Sbjct: 360 EEMAKEGRSYRLYYAKEAMKNQVRAYYEEAKWLQVQQIPTMEEYMPVALVTSAYSMLATT 419

Query: 182 SFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQH 241
           SF+GM D VTKE+F+W+   PKIV+AS+I+CRLMDD+VSHKFEQ+RGHVASAVECYMKQH
Sbjct: 420 SFVGMGDAVTKESFDWIFSKPKIVRASAIVCRLMDDMVSHKFEQKRGHVASAVECYMKQH 479

Query: 242 GVSEEEAVKVFREKVGNAWKDINEELMRPPVVPMPLLERVLNLARLMDVLYQNNDSYTNP 301
           G SE+E    F ++V +AWKDINEE + P  VPMP+L RVLNLAR++DV+Y+N D YT+ 
Sbjct: 480 GASEQETHNEFHKQVRDAWKDINEECLIPTAVPMPILMRVLNLARVIDVIYKNEDGYTHS 539

Query: 302 -HLMKDHVAALLKDPV 316
             ++KD V ++L DPV
Sbjct: 540 GTVLKDFVTSMLIDPV 555

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147828675|emb|CAN68620.1| hypothetical protein VITISV_013313 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147856860|emb|CAN83470.1| hypothetical protein VITISV_030783 [Vitis vinifera] Back     alignment and taxonomy information
>gi|41058926|gb|AAR99061.1| (-)-germacrene D synthase [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|347664489|gb|AEP17005.1| (E)-beta-caryophyllene synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|75223414|sp|Q6Q3H3.1|TPSGD_VITVI RecName: Full=(-)-germacrene D synthase gi|45478053|gb|AAS66357.1| (-)-germacrene D synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|336318889|gb|AEI52901.1| terpene synthase 1 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|302143186|emb|CBI20481.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|315134533|dbj|BAJ46125.1| sesquiterpene synthase [Toona sinensis] Back     alignment and taxonomy information
>gi|224126255|ref|XP_002319795.1| predicted protein [Populus trichocarpa] gi|222858171|gb|EEE95718.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query320
UNIPROTKB|B5A435559 B5A435 "Sesquiterpene synthase 0.984 0.563 0.547 1.1e-96
UNIPROTKB|B2KSJ5571 B2KSJ5 "(+)-gamma-cadinene syn 0.984 0.551 0.507 2.5e-81
UNIPROTKB|B3TPQ6550 B3TPQ6 "Beta-cubebene synthase 0.984 0.572 0.474 8.5e-81
UNIPROTKB|J7LMP2565 J7LMP2 "Bicyclogermacrene synt 0.990 0.561 0.478 1.1e-80
UNIPROTKB|J7LP58564 J7LP58 "Alpha-copaene/delta-ca 0.981 0.556 0.466 2.6e-79
UNIPROTKB|Q49SP4545 Q49SP4 "Germacrene D synthase 0.984 0.577 0.444 9.3e-75
UNIPROTKB|B2KSJ6560 B2KSJ6 "Alpha-farnesene syntha 0.978 0.558 0.448 4e-74
UNIPROTKB|J7LJN5555 J7LJN5 "Beta-caryophyllene syn 0.968 0.558 0.455 8.4e-74
UNIPROTKB|Q49SP5554 Q49SP5 "Germacrene A synthase" 0.975 0.563 0.456 3.6e-73
UNIPROTKB|D0VMR6547 C2 "Delta-guaiene synthase 1" 0.984 0.575 0.413 1.8e-71
UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
 Score = 961 (343.3 bits), Expect = 1.1e-96, P = 1.1e-96
 Identities = 173/316 (54%), Positives = 237/316 (75%)

Query:     2 LDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKIL 61
             LDFN+LQ  H++EL D+ RWWK+ D   K PF RDR+VEGYFW+LGVYFEP++ LARKI+
Sbjct:   242 LDFNLLQSLHKKELSDMARWWKSLDFAAKFPFARDRLVEGYFWVLGVYFEPQYSLARKII 301

Query:    62 TKVISMASIIDDIYDAYGTIEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFE 121
              KV +M S IDDIYDAYGT++ELELF  A++RWD+ ++D LPEY+K CY ++LD Y+E E
Sbjct:   302 IKVFTMISTIDDIYDAYGTLDELELFTKAMQRWDVGSLDQLPEYMKPCYKSILDVYNEIE 361

Query:   122 KDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTS 181
             +++ ++G L+ + +AKE MK LV  Y+ EA+WC ++YVPT EEYM VAL++ GY  L+T 
Sbjct:   362 EEMDNQGSLFRMHYAKEVMKKLVEGYMDEAKWCHEKYVPTFEEYMPVALVTSGYTFLTTI 421

Query:   182 SFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQH 241
             S+LGM +I +KEAF+W+  +P +++AS  +CRLMDD+ SHKFEQ+RGHVAS +ECYMKQ+
Sbjct:   422 SYLGMGEIASKEAFDWLFSHPPVIEASESVCRLMDDMRSHKFEQERGHVASGIECYMKQY 481

Query:   242 GVSEEEAVKVFREKVGNAWKDINXXXXXXXXXXXXXXXXXXNLARLMDVLYQNNDSYTN- 300
             GV+EEEA   FR+++  AWKDIN                  NL R++DV+Y+N D YT+ 
Sbjct:   482 GVTEEEAHDEFRKQLVKAWKDINEECLRPYRVPKPLLMRILNLTRVIDVIYKNEDGYTHV 541

Query:   301 PHLMKDHVAALLKDPV 316
                MKD++A+LL DP+
Sbjct:   542 KKAMKDNIASLLIDPM 557
GO:0010334 "sesquiterpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
UNIPROTKB|B2KSJ5 B2KSJ5 "(+)-gamma-cadinene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
UNIPROTKB|B3TPQ6 B3TPQ6 "Beta-cubebene synthase" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
UNIPROTKB|J7LMP2 J7LMP2 "Bicyclogermacrene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|J7LP58 J7LP58 "Alpha-copaene/delta-cadinene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP4 Q49SP4 "Germacrene D synthase 1" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|B2KSJ6 B2KSJ6 "Alpha-farnesene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
UNIPROTKB|J7LJN5 J7LJN5 "Beta-caryophyllene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP5 Q49SP5 "Germacrene A synthase" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|D0VMR6 C2 "Delta-guaiene synthase 1" [Aquilaria crassna (taxid:223751)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query320
cd00684542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 1e-158
cd00868284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 1e-118
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 1e-112
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 1e-44
PLN02279784 PLN02279, PLN02279, ent-kaur-16-ene synthase 1e-29
PLN0215096 PLN02150, PLN02150, terpene synthase/cyclase famil 9e-21
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  452 bits (1164), Expect = e-158
 Identities = 170/317 (53%), Positives = 238/317 (75%), Gaps = 2/317 (0%)

Query: 1   MLDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKI 60
            LDFNILQ  HQEEL+ + RWWK+ D+ +KLPF RDR+VE YFW  G YFEP++ LAR  
Sbjct: 226 KLDFNILQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIA 285

Query: 61  LTKVISMASIIDDIYDAYGTIEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEF 120
           L K I++ ++IDD YD YGT+EELELF  A+ERWD+SAID LPEY+K+ + ALL+  +E 
Sbjct: 286 LAKTIALITVIDDTYDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEI 345

Query: 121 EKDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLST 180
           E++L  +G  Y +P+ KE+ K LV++Y++EA+W  + YVPT EEYM  AL+S G   L  
Sbjct: 346 EEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLL 405

Query: 181 SSFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQ 240
           +SFLGM DI+T+EAFEW+   PK+V+ASS I RLM+DI +++ E +RG VAS++ECYMK+
Sbjct: 406 TSFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKE 465

Query: 241 HGVSEEEAVKVFREKVGNAWKDINEELMRPP-VVPMPLLERVLNLARLMDVLYQNNDSYT 299
           +GVSEEEA +  ++ + +AWK++NEE ++P   VP P+ +R LNLAR++DV Y+  D +T
Sbjct: 466 YGVSEEEAREEIKKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFT 525

Query: 300 NPH-LMKDHVAALLKDP 315
           +P   +KDH+ +LL +P
Sbjct: 526 HPEGEIKDHITSLLFEP 542

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|177811 PLN02150, PLN02150, terpene synthase/cyclase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 320
PLN02279784 ent-kaur-16-ene synthase 100.0
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02592800 ent-copalyl diphosphate synthase 100.0
cd00868284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 100.0
PF03936270 Terpene_synth_C: Terpene synthase family, metal bi 100.0
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 100.0
PLN0215096 terpene synthase/cyclase family protein 99.97
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.88
PF06330376 TRI5: Trichodiene synthase (TRI5); InterPro: IPR02 98.13
cd00686357 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene C 98.11
PF00494267 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR 95.91
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 93.05
cd00685259 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthase 91.6
TIGR03465266 HpnD squalene synthase HpnD. The genes of this fam 90.42
cd00683265 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthase 88.19
TIGR03464266 HpnC squalene synthase HpnC. This family of genes 85.64
TIGR02749322 prenyl_cyano solanesyl diphosphate synthase. Membe 83.4
COG0142322 IspA Geranylgeranyl pyrophosphate synthase [Coenzy 82.87
PLN02890422 geranyl diphosphate synthase 81.11
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information 
Probab=100.00  E-value=1.1e-88  Score=684.85  Aligned_cols=316  Identities=24%  Similarity=0.392  Sum_probs=302.8

Q ss_pred             CcchHHhHHHHHHHHHHHHHHhhhcCCCCCchhhhhhhhhhHHHHhccccCCCchhHHHHHHHHHHHHHHHHhhhhccCC
Q 043754            1 MLDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKILTKVISMASIIDDIYDAYGT   80 (320)
Q Consensus         1 kldfn~~Q~~hq~El~~l~~W~~~~~l~~~l~~~R~r~~~~y~~~~a~~feP~~s~~Rl~~ak~~~l~~~iDD~~D~~~t   80 (320)
                      |+|||+||++||+||++++|||+++|| +++||+|+|+++||||++|++|||++|.+|++|||.++|++++||+||.|||
T Consensus       460 klDFN~~Qs~hq~EL~~l~rWwke~~L-~~L~faRdr~ve~Yf~aaa~~fEPe~S~aRi~~aK~~~L~tviDD~fD~yGt  538 (784)
T PLN02279        460 VEDFNFCQSIHREELKQLERWIVENRL-DKLKFARQKLAYCYFSAAATLFSPELSDARLSWAKNGVLTTVVDDFFDVGGS  538 (784)
T ss_pred             HHHHHHHHHHHHHHHHHhCeeHHhcCC-ccCCchhhHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            789999999999999999999999999 7999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcchh-hcccCchhHHHHHHHHHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHHHHHHHHHHhhCCCC
Q 043754           81 IEELELFATAIERWDLS-AIDLLPEYIKLCYCALLDAYSEFEKDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYV  159 (320)
Q Consensus        81 ~~el~~~~~ai~rwd~~-~~~~lp~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~  159 (320)
                      .||++.||+||+|||.+ .++.+|+|||+||.++++++++++.++.+.+|.++.++++++|++++++|++||+|+++|++
T Consensus       539 ~eEL~~ft~aVeRWD~~~~~~~lpeymki~f~aL~~t~nei~~~~~~~qGr~v~~~l~~aW~~ll~ayl~EAeW~~~g~v  618 (784)
T PLN02279        539 EEELENLIQLVEKWDVNGSPDFCSEQVEIIFSALRSTISEIGDKAFTWQGRNVTSHIIKIWLDLLKSMLTEAQWSSNKST  618 (784)
T ss_pred             HHHHHHHHHHHHHhccccchhhCcHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            99999999999999998 56899999999999999999999988654444488999999999999999999999999999


Q ss_pred             CChHHHHhhhhhhhhhhHHHHHHHhcCCCCCCHHHHhhccCchHHHHHHHhHHHHhcCccchHHhhhcCCcchhHHHHHh
Q 043754          160 PTMEEYMRVALLSCGYLLLSTSSFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMK  239 (320)
Q Consensus       160 Pt~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~g~~~n~V~~ym~  239 (320)
                      ||+||||+|+.+|+|+.+++..+.+++|..+|+++++| +++|+|+++++.++||+|||+||++|+++|++ |+|+|||+
T Consensus       619 PT~eEYL~na~vS~~l~~i~l~~~~~~G~~l~eev~e~-~~~~~L~~l~s~I~RLlNDI~S~e~E~~rG~~-nsV~cYMk  696 (784)
T PLN02279        619 PTLDEYMTNAYVSFALGPIVLPALYLVGPKLSEEVVDS-PELHKLYKLMSTCGRLLNDIRGFKRESKEGKL-NAVSLHMI  696 (784)
T ss_pred             CCHHHHHhhchhhhhhHHHHHHHHHHhCCCCCHHHHhC-cchhHHHHHHHHHHHHHHhccccHhHHhCCCc-ceehhhhc
Confidence            99999999999999999998888999999999999999 79999999999999999999999999999998 99999999


Q ss_pred             hC--CCCHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHhhhhhhcccCCCCCCchhHHHHHHHhhhcc
Q 043754          240 QH--GVSEEEAVKVFREKVGNAWKDINEELMRP--PVVPMPLLERVLNLARLMDVLYQNNDSYTNPHLMKDHVAALLKDP  315 (320)
Q Consensus       240 e~--g~s~eeA~~~i~~~i~~~~k~l~~~~~~~--~~~p~~~~~~~~n~~r~~~~~Y~~~D~~~~~~~~~~~i~~~l~~p  315 (320)
                      |+  |+|+|||+++++++|+++||+||++++++  +.+|++|+++|+|++|++++||+++||||.+ .||++|++||++|
T Consensus       697 e~~~gvSeEEAi~~i~~~Ie~~wKeLn~~~l~~~~~~vp~~~~~~~ln~aR~~~~~Y~~~Dgyt~~-~~k~~i~~ll~eP  775 (784)
T PLN02279        697 HGNGNSTEEEAIESMKGLIESQRRELLRLVLQEKGSNVPRECKDLFWKMSKVLHLFYRKDDGFTSN-DMMSLVKSVIYEP  775 (784)
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhhhhheeCCCCCChH-HHHHHHHHHhccC
Confidence            86  89999999999999999999999999973  5799999999999999999999999999975 7999999999999


Q ss_pred             ccCCC
Q 043754          316 VFFED  320 (320)
Q Consensus       316 ~~~~~  320 (320)
                      ||+.+
T Consensus       776 i~l~~  780 (784)
T PLN02279        776 VSLQE  780 (784)
T ss_pred             CcCCc
Confidence            99753

>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>PLN02150 terpene synthase/cyclase family protein Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4 Back     alignment and domain information
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1 Back     alignment and domain information
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail Back     alignment and domain information
>TIGR03465 HpnD squalene synthase HpnD Back     alignment and domain information
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head Back     alignment and domain information
>TIGR03464 HpnC squalene synthase HpnC Back     alignment and domain information
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase Back     alignment and domain information
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism] Back     alignment and domain information
>PLN02890 geranyl diphosphate synthase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query320
3g4d_A554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 7e-92
3lz9_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 5e-78
5eat_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-77
3m01_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-77
5eau_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-77
5eas_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-77
4di5_A535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 1e-77
1hxc_A548 Crystal Structure Of Teas C440w Length = 548 3e-76
1hx9_A548 Crystal Structure Of Teas W273s Form 1 Length = 548 3e-76
1hxg_A548 Crystal Structure Of Teas W273sC440W Length = 548 1e-74
2j5c_A569 Rational Conversion Of Substrate And Product Specif 5e-55
1n1b_A549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 6e-55
3n0f_A555 Crystal Structure Of Isoprene Synthase From Grey Po 4e-54
2ong_A543 Crystal Structure Of Of Limonene Synthase With 2- F 1e-50
3s9v_A785 Abietadiene Synthase From Abies Grandis Length = 78 6e-47
3sae_A817 Structure Of A Three-Domain Sesquiterpene Synthase: 2e-45
3p5p_A764 Crystal Structure Of Taxadiene Synthase From Pacifi 4e-34
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure 
Iteration: 1

 Score =  333 bits (854), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 159/316 (50%), Positives = 215/316 (68%), Gaps = 1/316 (0%)
Query: 2   LDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKIL 61
           +DFN+LQ  H++EL +I RWWK+ D   KLP+ RDRVVEGYFWI GVYFEP++ L RK+L
Sbjct: 237 IDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKML 296
Query: 62  TKVISMASIIDDIYDAYGTIEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFE 121
           TKVI+MASI+DD YD+Y T EEL  +  AIERWD+  ID +PEY+K  Y ALLD Y E  
Sbjct: 297 TKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMV 356
Query: 122 KDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTS 181
           + +A  G  Y + +AK +M  L +SY++EA+W  Q Y P+ EE+   AL +CGY +L+ +
Sbjct: 357 QLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAIT 416
Query: 182 SFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQH 241
           SF+GM DIVT E F+W + +PKI+QAS+IICR MDD+  HKF+ +R    SA+ECYM+++
Sbjct: 417 SFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEY 476
Query: 242 GVSEEEAVKVFREKVGNAWKDINXXXXXXXXXXXXXXXXXXNLARLMDVLYQNNDSYTN- 300
           GV+ +EA  VF + V +AWKD+N                  NLAR+MDVLY+  D YT  
Sbjct: 477 GVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYV 536
Query: 301 PHLMKDHVAALLKDPV 316
               K  + +LL +P+
Sbjct: 537 GKAAKGGITSLLIEPI 552
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query320
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 1e-118
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 1e-114
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 1e-114
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 1e-113
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 1e-113
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 1e-111
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 1e-110
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 1e-108
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 1e-103
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 9e-49
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 1e-37
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 3e-36
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 6e-22
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 4e-14
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
 Score =  351 bits (901), Expect = e-118
 Identities = 165/317 (52%), Positives = 226/317 (71%), Gaps = 1/317 (0%)

Query: 1   MLDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKI 60
            +DFN+LQ  H++EL +I RWWK+ D   KLP+ RDRVVEGYFWI GVYFEP++ L RK+
Sbjct: 236 KIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKM 295

Query: 61  LTKVISMASIIDDIYDAYGTIEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEF 120
           LTKVI+MASI+DD YD+Y T EEL  +  AIERWD+  ID +PEY+K  Y ALLD Y E 
Sbjct: 296 LTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEM 355

Query: 121 EKDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLST 180
            + +A  G  Y + +AK +M  L +SY++EA+W  Q Y P+ EE+   AL +CGY +L+ 
Sbjct: 356 VQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAI 415

Query: 181 SSFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQ 240
           +SF+GM DIVT E F+W + +PKI+QAS+IICR MDD+  HKF+ +R    SA+ECYM++
Sbjct: 416 TSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEE 475

Query: 241 HGVSEEEAVKVFREKVGNAWKDINEELMRPPVVPMPLLERVLNLARLMDVLYQNNDSYTN 300
           +GV+ +EA  VF + V +AWKD+N+E ++P  +P  +L R LNLAR+MDVLY+  D YT 
Sbjct: 476 YGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTY 535

Query: 301 P-HLMKDHVAALLKDPV 316
                K  + +LL +P+
Sbjct: 536 VGKAAKGGITSLLIEPI 552
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Length = 320 Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Length = 300 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query320
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 100.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 100.0
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 100.0
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 100.0
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 100.0
1yyq_A374 Trichodiene synthase; terpenoid cyclase fold, site 99.83
3lmd_A360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 92.39
3ipi_A295 Geranyltranstransferase; isoprene biosynthesis, he 90.49
3acx_A293 Dehydrosqualene synthase; CRTM, carotenoid biosynt 87.15
3rmg_A334 Octaprenyl-diphosphate synthase; structural genomi 86.72
3ts7_A324 Geranyltranstransferase; isoprenoid synthesis, far 85.91
4hd1_A294 Squalene synthase HPNC; MCSG, structural genomics, 85.44
3lsn_A304 Geranyltranstransferase; structural genomics, prot 85.1
3m0g_A297 Farnesyl diphosphate synthase; structural genomics 84.88
3oyr_A345 Trans-isoprenyl diphosphate synthase; isoprenyl sy 83.96
3mzv_A341 Decaprenyl diphosphate synthase; transferase, stru 82.95
1rtr_A301 Geranyltranstransferase; 2.50A {Staphylococcus aur 82.19
2ftz_A284 Geranyltranstransferase; TM0161, structural GE joi 81.01
3p8l_A302 Geranyltranstransferase; isoprenyl synthase, struc 80.76
3p8r_A302 Geranyltranstransferase; isoprenyl synthase, struc 80.74
1wy0_A342 Geranylgeranyl pyrophosphate synthetase; pyrococcu 80.27
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=6.9e-99  Score=736.61  Aligned_cols=318  Identities=52%  Similarity=0.961  Sum_probs=302.0

Q ss_pred             CcchHHhHHHHHHHHHHHHHHhhhcCCCCCchhhhhhhhhhHHHHhccccCCCchhHHHHHHHHHHHHHHHHhhhhccCC
Q 043754            1 MLDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKILTKVISMASIIDDIYDAYGT   80 (320)
Q Consensus         1 kldfn~~Q~~hq~El~~l~~W~~~~~l~~~l~~~R~r~~~~y~~~~a~~feP~~s~~Rl~~ak~~~l~~~iDD~~D~~~t   80 (320)
                      |||||+||++||+||++++||||++||.+++||+|||+++||||++|++|||++|.+|++|||+++|++++||+||.|||
T Consensus       236 kldFn~~Q~~hq~El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT  315 (554)
T 3g4d_A          236 KIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYAT  315 (554)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCC
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            78999999999999999999999999977999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcchhhcccCchhHHHHHHHHHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHHHHHHHHHHhhCCCCC
Q 043754           81 IEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFEKDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVP  160 (320)
Q Consensus        81 ~~el~~~~~ai~rwd~~~~~~lp~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~P  160 (320)
                      ++|++.||+||+|||+++++.||+|||+||.+++++++|++.++.++||++++++++++|++++++|++||+|+++|++|
T Consensus       316 leEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvP  395 (554)
T 3g4d_A          316 YEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKP  395 (554)
T ss_dssp             HHHHHHHHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            99999999999999999999999999999999999999999999899998999999999999999999999999999999


Q ss_pred             ChHHHHhhhhhhhhhhHHHHHHHhcCCCCCCHHHHhhccCchHHHHHHHhHHHHhcCccchHHhhhcCCcchhHHHHHhh
Q 043754          161 TMEEYMRVALLSCGYLLLSTSSFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQ  240 (320)
Q Consensus       161 t~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~g~~~n~V~~ym~e  240 (320)
                      |+||||+||.+|+|++++++++++++|+.+|+++++|++++|+++++++.++||+|||+||++|+++|+++|+|+|||+|
T Consensus       396 T~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke  475 (554)
T 3g4d_A          396 SFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEE  475 (554)
T ss_dssp             CHHHHHHHHGGGSCHHHHHHHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHH
T ss_pred             CHHHHHhccceeehHHHHHHHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhhhhhcccCCCCCCc-hhHHHHHHHhhhccccC
Q 043754          241 HGVSEEEAVKVFREKVGNAWKDINEELMRPPVVPMPLLERVLNLARLMDVLYQNNDSYTNP-HLMKDHVAALLKDPVFF  318 (320)
Q Consensus       241 ~g~s~eeA~~~i~~~i~~~~k~l~~~~~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~~~~-~~~~~~i~~~l~~p~~~  318 (320)
                      +|+|+|+|+++++++|+++||+||+++++++++|++|+++++|++|+++++|++|||||.| ..||++|++||++|||+
T Consensus       476 ~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~l  554 (554)
T 3g4d_A          476 YGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL  554 (554)
T ss_dssp             HTCCHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCCCCC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCCCCC
Confidence            9999999999999999999999999999988999999999999999999999999999998 78999999999999986
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Back     alignment and structure
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Back     alignment and structure
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... Back     alignment and structure
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus} Back     alignment and structure
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A* Back     alignment and structure
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A Back     alignment and structure
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} Back     alignment and structure
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} Back     alignment and structure
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1 Back     alignment and structure
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima} Back     alignment and structure
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis} Back     alignment and structure
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1 Back     alignment and structure
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 320
d1n1ba2328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 1e-140
d5easa2328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 1e-136
d1ps1a_311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 3e-58
d1di1a_300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 1e-43
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  398 bits (1024), Expect = e-140
 Identities = 109/317 (34%), Positives = 179/317 (56%), Gaps = 2/317 (0%)

Query: 2   LDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKIL 61
           L+FNI+Q  HQ+EL+D+ RWW     P KLPF+RDR+VE +FW +G++   +    RK+ 
Sbjct: 11  LNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMA 70

Query: 62  TKVISMASIIDDIYDAYGTIEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFE 121
             +I +A++IDDIYD YGT++ELELF    +RWD  +I  LP Y++LCY  + +  S+  
Sbjct: 71  ATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAA 130

Query: 122 KDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVPTMEEYMRVALLSCGYLLLSTS 181
            D+  +   + L + ++S+  LV +Y  EA+W    Y P+++EY+ +A +S     + + 
Sbjct: 131 YDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISP 190

Query: 182 SFLGMEDIVTKEA-FEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQ 240
           ++    +     A  + +     I+  + II RL DD+ +  FE  RG V   ++CYMK+
Sbjct: 191 TYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKE 250

Query: 241 HGVSEEEAVKVFREKVGNAWKDINEELMRPPVVPMPLLERVLNLARLMDVLYQNNDSYTN 300
              SEEEAV+  +  +  AWKD+N  +      P  ++    N+ R+   +Y + D +  
Sbjct: 251 TNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGV 310

Query: 301 PH-LMKDHVAALLKDPV 316
            H    +H+A LL +P 
Sbjct: 311 QHSKTYEHIAGLLFEPY 327
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query320
d5easa2328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba2328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d1ps1a_311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 100.0
d1di1a_300 Aristolochene synthase {Fungus (Penicillium roquef 99.98
d1kiya_354 Trichodiene synthase {Fusarium sporotrichioides [T 99.59
d1ezfa_333 Squalene synthase {Human (Homo sapiens) [TaxId: 96 83.62
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=2.2e-100  Score=707.46  Aligned_cols=317  Identities=48%  Similarity=0.892  Sum_probs=301.7

Q ss_pred             CcchHHhHHHHHHHHHHHHHHhhhcCCCCCchhhhhhhhhhHHHHhccccCCCchhHHHHHHHHHHHHHHHHhhhhccCC
Q 043754            1 MLDFNILQKQHQEELRDIVRWWKNFDVPNKLPFIRDRVVEGYFWILGVYFEPKFLLARKILTKVISMASIIDDIYDAYGT   80 (320)
Q Consensus         1 kldfn~~Q~~hq~El~~l~~W~~~~~l~~~l~~~R~r~~~~y~~~~a~~feP~~s~~Rl~~ak~~~l~~~iDD~~D~~~t   80 (320)
                      |||||+||++||+||++++|||+++|+.+++||+|||+++||||++|++|||++|.+|++|||.+++++++||+||.|||
T Consensus        10 KlDFN~~Q~~hq~El~~l~rWw~~~~l~~~l~~aRdr~ve~Yfw~~~~~fEP~~s~~R~~~aK~~~l~ti~DD~yD~ygt   89 (328)
T d5easa2          10 KLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT   89 (328)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHhhCCcccCCchHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHhhhhhcccCCC
Confidence            79999999999999999999999999977899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcchhhcccCchhHHHHHHHHHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHHHHHHHHHHhhCCCCC
Q 043754           81 IEELELFATAIERWDLSAIDLLPEYIKLCYCALLDAYSEFEKDLASKGILYGLPFAKESMKILVRSYIIEARWCDQQYVP  160 (320)
Q Consensus        81 ~~el~~~~~ai~rwd~~~~~~lp~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~P  160 (320)
                      ++|++.||++|+|||.++++.+|+|||++|.++++++++++.++.++||.++.++++++|++++++|++||+|+++|++|
T Consensus        90 ~eEl~~ft~ai~rWd~~~~~~lp~ymk~~~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~~~l~EA~W~~~g~vP  169 (328)
T d5easa2          90 VKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTP  169 (328)
T ss_dssp             HHHHHHHHHHHHHTCSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHhcCCcchhhhCCchHHHHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHhhhhhhhhhhHHHHHHHhcCCCCCCHHHHhhccCchHHHHHHHhHHHHhcCccchHHhhhcCCcchhHHHHHhh
Q 043754          161 TMEEYMRVALLSCGYLLLSTSSFLGMEDIVTKEAFEWVSGNPKIVQASSIICRLMDDIVSHKFEQQRGHVASAVECYMKQ  240 (320)
Q Consensus       161 t~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~g~~~n~V~~ym~e  240 (320)
                      |+||||++|.+|+|+.++++++++++|. ++++.++|++++|+++++++.++||+|||+|+++|+++|+++|+|.|||+|
T Consensus       170 t~eEYl~~~~~s~~~~~l~~~~~~~~g~-~~~e~~~~~~~~p~l~~~~~~i~RL~NDi~s~~~E~~rG~~~s~I~cym~e  248 (328)
T d5easa2         170 PVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRD  248 (328)
T ss_dssp             CHHHHHHHHTGGGCHHHHHHHHHHTCTT-CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             ChHhhhcceeeeehHHHHHHHHHHhCCC-CcHHHHHhcccchHHHHHHHHHHHHHhhhHHHHHHhccCCCCeeEEEEecC
Confidence            9999999999999999999999999997 466788999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhhhhhcccC-CCCCCc-hhHHHHHHHhhhccccC
Q 043754          241 HGVSEEEAVKVFREKVGNAWKDINEELMRPPVVPMPLLERVLNLARLMDVLYQNN-DSYTNP-HLMKDHVAALLKDPVFF  318 (320)
Q Consensus       241 ~g~s~eeA~~~i~~~i~~~~k~l~~~~~~~~~~p~~~~~~~~n~~r~~~~~Y~~~-D~~~~~-~~~~~~i~~~l~~p~~~  318 (320)
                      +|+|+|||+++++++|+++||+||+++++++++|++++++++|+||+++++|++| ||||+| +.+|+||++|||+|||+
T Consensus       249 ~g~t~EeA~~~i~~~ie~~wk~ln~e~l~~~~~~~~~~~~~~n~ar~~~~~Y~~~~D~yt~~~~~~k~~i~~ll~epi~~  328 (328)
T d5easa2         249 YGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI  328 (328)
T ss_dssp             HTCCHHHHHHHHHHHHHHHHHHHHHHTSSSCSSCGGGTHHHHHHHHHHHHHTC-----------CCHHHHHHHHTCCCCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHHhccCCcC
Confidence            9999999999999999999999999999999999999999999999999999987 999999 57999999999999996
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} Back     information, alignment and structure
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure