Citrus Sinensis ID: 043762

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440---
MKDYIFGYSFLNPCLKSPYFSLLHVLLIQIQLAFSSPDVLILPLRTQEIPSGSFPRSPNKLPFHHNVSLTVSLTVGTPPQNVSMVLDTGSELSWLHCNNTRYSYPNAFDPNLSSSYKPVTCSSPTCVNRTRDFTIPVSCDNNSLCHATLSYADASSSEGNLASDQFFIGSSEISGLVFGCMDSVFSSSSDEDGKNTGLMGMNRGSLSFVSQMGFPKFSYCISGADFSGLLLLGDADLPWLLPLNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDKLLPIPRSVFVPDHTGAGQTMVDSGTQFTFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGAMDLCYRVPQNQSRLPQLPAVSLVFRGAEMSVSGDRLLYRAPGEVRGIDSVYCFTFGNSDLLGVEAYVIGHHHQQNVWMEFDLERSRIGMAQVRCDLAGQRFGVGL
cccEEEEEEEEccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEEEEEcccccEEEEEEEccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEEEEEEEEcccccccEEEccccccccccccccccccEEEEcccccccHHHccccccEEEcccccccccEEEEcccccccccccEEEccccccccccccccccEEEEEEEEEEccEEEccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEEcccEEEEccccEEEEccccccccccEEEEEEEEccccccccEEEEcEEEEEEEEEEEccccEEEEEcccccHHHHHccccc
cccccccccHHHHHHHHcHHHHHHHHHHHHHHHHccccccccHHHHccccccccccccccccccccEEEEEEEEEccccccEEEEEEcccccEEEEcccccccccccccccccccccccccccHHHHcccccccccccccccccEEEEEEEEccccccEEEEEEEEEEcccccccEEEEEccccccccccccccccEEEEcccccccEHHHccccEEEEEEEcccccEEEEEcccccccccccEEEEccccccccccccccEEEEEEEEEEEccEEEEccHHHcccccccccEEEEEcccEEEcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHEcccccccccccccEEEEEEcccEccccHHHEEEEEccccccccEEEEEEEcccccccccEEEEEEEEEccEEEEEEccccEEEEccccHHHHHHHHcccc
MKDYIFgysflnpclkspyfsLLHVLLIQIQLafsspdvlilplrtqeipsgsfprspnklpfhhnvsltvsltvgtppqnvsmvldtgselswlhcnntrysypnafdpnlsssykpvtcssptcvnrtrdftipvscdnnslchaTLSYadasssegnlasdqffigsseisgLVFGCmdsvfssssdedgkntglmgmnrgslsfvsqmgfpkfsycisgadfsgllllgdadlpwllplnytpliqmttplpyfdrVAYTVQLEGIKVldkllpiprsvfvpdhtgagqtmvdsgtqftflLGPAYAALRTEFLNQTASILKVLEDQNFVFQGAMDlcyrvpqnqsrlpqlpavslvfrgaemsvsgdrllyrapgevrgidsvycftfgnsdllgVEAYVIGHHHQQNVWMEFDLERSRIGMAQVRCDLagqrfgvgl
MKDYIFGYSFLNPCLKSPYFSLLHVLLIQIQLAFSSPDVLILPLRTQEIPSGSFPRSPNKLPFHHNVSLTVSLTVGTPPQNVSMVLDTGSELSWLHCNNTRYSYPNAFDPNLSSSYKPVTCSSPTCVNRTRDFTIPVSCDNNSLCHATLSYADASSSEGNLASDQFFIGSSEISGLVFGCMDSVFSSSSDEDGKNTGLMGMNRGSLSFVSQMGFPKFSYCISGADFSGLLLLGDADLPWLLPLNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDKLLPIPRSVFVPDHTGAGQTMVDSGTQFTFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGAMDLCYRVPQNQSRLPQLPAVSLVFRGAEMSVSGDRLLYRAPGEVRGIDSVYCFTFGNSDLLGVEAYVIGHHHQQNVWMEFDLERSRIGMAQVRCDLAgqrfgvgl
MKDYIFGYSFLNPCLKSPYFSLLHVLLIQIQLAFSSPDVLILPLRTQEIPSGSFPRSPNKLPFHHNVSLTVSLTVGTPPQNVSMVLDTGSELSWLHCNNTRYSYPNAFDPNLSSSYKPVTCSSPTCVNRTRDFTIPVSCDNNSLCHATLSYADASSSEGNLASDQFFIGSSEISGLVFGCMDSVFSSSSDEDGKNTGLMGMNRGSLSFVSQMGFPKFSYCISGADFSgllllgdadlpwllplNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDKLLPIPRSVFVPDHTGAGQTMVDSGTQFTFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGAMDLCYRVPQNQSRLPQLPAVSLVFRGAEMSVSGDRLLYRAPGEVRGIDSVYCFTFGNSDLLGVEAYVIGHHHQQNVWMEFDLERSRIGMAQVRCDLAGQRFGVGL
***YIFGYSFLNPCLKSPYFSLLHVLLIQIQLAFSSPDVLILPLRTQ**************PFHHNVSLTVSLTVGTPPQNVSMVLDTGSELSWLHCNNTRYSYPNAFDPNLSSSYKPVTCSSPTCVNRTRDFTIPVSCDNNSLCHATLSYAD**********DQFFIGSSEISGLVFG**************************LSFVSQMGFPKFSYCISGADFSGLLLLGDADLPWLLPLNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDKLLPIPRSVFVPDHTGAGQTMVDSGTQFTFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGAMDLCYRVPQNQSRLPQLPAVSLVFRGAEMSVSGDRLLYRAPGEVRGIDSVYCFTFGNSDLLGVEAYVIGHHHQQNVWMEFDLERSRIGMAQVRCDLAGQRF****
***YIFGYSFLNPCLKSPYFSLLHVLLIQ**********************************HHNVSLTVSLTVGTPPQNVSMVLDTGSELSWLHCNNTRYSYPNA***********VTCSSPTCVNR*************SLCHATLSYADASSSEGNLASDQFFIGSSEISGLVFGCMDSVFSSSSDEDGKNTGLMGMNRGSLSFVSQMGFPKFSYCISGADFSGLLLLGDADLPWLLPLNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDKLLPIPRSVFVPDHTGAGQTMVDSGTQFTFLLGPAYAALRTEFLNQTA***********VFQGAMDLCYRVPQNQSRLPQLPAVSLVFRGAEMSVSGDRLLYRAPGEVRGIDSVYCFTFGNSDLLGVEAYVIGHHHQQNVWMEFDLERSRIGMAQVRCDLAGQRFGV**
MKDYIFGYSFLNPCLKSPYFSLLHVLLIQIQLAFSSPDVLILPLRTQEIPSGSFPRSPNKLPFHHNVSLTVSLTVGTPPQNVSMVLDTGSELSWLHCNNTRYSYPNAFDPNLSSSYKPVTCSSPTCVNRTRDFTIPVSCDNNSLCHATLSYADASSSEGNLASDQFFIGSSEISGLVFGCMDSVFSSSSDEDGKNTGLMGMNRGSLSFVSQMGFPKFSYCISGADFSGLLLLGDADLPWLLPLNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDKLLPIPRSVFVPDHTGAGQTMVDSGTQFTFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGAMDLCYRVPQNQSRLPQLPAVSLVFRGAEMSVSGDRLLYRAPGEVRGIDSVYCFTFGNSDLLGVEAYVIGHHHQQNVWMEFDLERSRIGMAQVRCDLAGQRFGVGL
*****FGYSFLNPCLKSPYFSLLHVLLIQIQLAFSSPDVLILPLRTQ***********NKLPFHHNVSLTVSLTVGTPPQNVSMVLDTGSELSWLHCNNTRYSYPNAFDPNLSSSYKPVTCSSPTCVNRTRDFTIPVSCDNNSLCHATLSYADASSSEGNLASDQFFIGSSEISGLVFGCMDSVFSSSSDEDGKNTGLMGMNRGSLSFVSQMGFPKFSYCISGADFSGLLLLGDADLPWLLPLNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDKLLPIPRSVFVPDHTGAGQTMVDSGTQFTFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGAMDLCYRVPQNQSRLPQLPAVSLVFRGAEMSVSGDRLLYRAPGEVRGIDSVYCFTFGNSDLLGVEAYVIGHHHQQNVWMEFDLERSRIGMAQVRCDLAGQRFGVG*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKDYIFGYSFLNPCLKSPYFSLLHVLLIQIQLAFSSPDVLILPLRTQEIPSGSFPRSPNKLPFHHNVSLTVSLTVGTPPQNVSMVLDTGSELSWLHCNNTRYSYPNAFDPNLSSSYKPVTCSSPTCVNRTRDFTIPVSCDNNSLCHATLSYADASSSEGNLASDQFFIGSSEISGLVFGCMDSVFSSSSDEDGKNTGLMGMNRGSLSFVSQMGFPKFSYCISGADFSGLLLLGDADLPWLLPLNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDKLLPIPRSVFVPDHTGAGQTMVDSGTQFTFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGAMDLCYRVPQNQSRLPQLPAVSLVFRGAEMSVSGDRLLYRAPGEVRGIDSVYCFTFGNSDLLGVEAYVIGHHHQQNVWMEFDLERSRIGMAQVRCDLAGQRFGVGL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query443 2.2.26 [Sep-21-2011]
Q9LZL3453 Aspartic proteinase PCS1 yes no 0.907 0.887 0.695 1e-156
Q766C3437 Aspartic proteinase nepen N/A no 0.749 0.759 0.301 4e-34
Q766C2438 Aspartic proteinase nepen N/A no 0.747 0.755 0.292 3e-32
Q9LS40500 Protein ASPARTIC PROTEASE no no 0.715 0.634 0.291 7e-24
Q3EBM5447 Probable aspartic proteas no no 0.749 0.742 0.271 2e-21
Q9LHE3470 Protein ASPARTIC PROTEASE no no 0.711 0.670 0.272 3e-20
Q6XBF8437 Aspartic proteinase CDR1 no no 0.738 0.748 0.253 8e-16
Q9S9K4475 Aspartic proteinase-like no no 0.722 0.673 0.253 2e-15
A2ZC67410 Aspartic proteinase Asp1 N/A no 0.654 0.707 0.229 2e-10
Q0IU52410 Aspartic proteinase Asp1 no no 0.774 0.836 0.224 4e-10
>sp|Q9LZL3|PCS1L_ARATH Aspartic proteinase PCS1 OS=Arabidopsis thaliana GN=PCS1 PE=2 SV=1 Back     alignment and function desciption
 Score =  552 bits (1423), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 285/410 (69%), Positives = 328/410 (80%), Gaps = 8/410 (1%)

Query: 39  VLILPLRTQEIPSGSFPRSPNKLPFHHNVSLTVSLTVGTPPQNVSMVLDTGSELSWLHCN 98
            L+LPL+T+  P+   P   +KL FHHNV+LTV+LTVGTPPQN+SMV+DTGSELSWL CN
Sbjct: 45  TLVLPLKTRITPTDHRPT--DKLHFHHNVTLTVTLTVGTPPQNISMVIDTGSELSWLRCN 102

Query: 99  NTRYSYP-NAFDPNLSSSYKPVTCSSPTCVNRTRDFTIPVSCDNNSLCHATLSYADASSS 157
            +    P N FDP  SSSY P+ CSSPTC  RTRDF IP SCD++ LCHATLSYADASSS
Sbjct: 103 RSSNPNPVNNFDPTRSSSYSPIPCSSPTCRTRTRDFLIPASCDSDKLCHATLSYADASSS 162

Query: 158 EGNLASDQFFIG-SSEISGLVFGCMDSVFSSSSDEDGKNTGLMGMNRGSLSFVSQMGFPK 216
           EGNLA++ F  G S+  S L+FGCM SV  S  +ED K TGL+GMNRGSLSF+SQMGFPK
Sbjct: 163 EGNLAAEIFHFGNSTNDSNLIFGCMGSVSGSDPEEDTKTTGLLGMNRGSLSFISQMGFPK 222

Query: 217 FSYCISGAD-FSGLLLLGDADLPWLLPLNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDK 275
           FSYCISG D F G LLLGD++  WL PLNYTPLI+++TPLPYFDRVAYTVQL GIKV  K
Sbjct: 223 FSYCISGTDDFPGFLLLGDSNFTWLTPLNYTPLIRISTPLPYFDRVAYTVQLTGIKVNGK 282

Query: 276 LLPIPRSVFVPDHTGAGQTMVDSGTQFTFLLGPAYAALRTEFLNQTASILKVLEDQNFVF 335
           LLPIP+SV VPDHTGAGQTMVDSGTQFTFLLGP Y ALR+ FLN+T  IL V ED +FVF
Sbjct: 283 LLPIPKSVLVPDHTGAGQTMVDSGTQFTFLLGPVYTALRSHFLNRTNGILTVYEDPDFVF 342

Query: 336 QGAMDLCYRVPQNQSR---LPQLPAVSLVFRGAEMSVSGDRLLYRAPGEVRGIDSVYCFT 392
           QG MDLCYR+   + R   L +LP VSLVF GAE++VSG  LLYR P    G DSVYCFT
Sbjct: 343 QGTMDLCYRISPVRIRSGILHRLPTVSLVFEGAEIAVSGQPLLYRVPHLTVGNDSVYCFT 402

Query: 393 FGNSDLLGVEAYVIGHHHQQNVWMEFDLERSRIGMAQVRCDLAGQRFGVG 442
           FGNSDL+G+EAYVIGHHHQQN+W+EFDL+RSRIG+A V CD++GQR G+G
Sbjct: 403 FGNSDLMGMEAYVIGHHHQQNMWIEFDLQRSRIGLAPVECDVSGQRLGIG 452
Embryo-specific aspartic protease that limits programmed cell death during reproductive development. Possesses peptidase activity toward casein in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -
>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 Back     alignment and function description
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function description
>sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 Back     alignment and function description
>sp|Q3EBM5|ASPR1_ARATH Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1 Back     alignment and function description
>sp|Q9LHE3|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1 Back     alignment and function description
>sp|Q6XBF8|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1 Back     alignment and function description
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function description
>sp|A2ZC67|ASP1_ORYSI Aspartic proteinase Asp1 OS=Oryza sativa subsp. indica GN=ASP1 PE=2 SV=2 Back     alignment and function description
>sp|Q0IU52|ASP1_ORYSJ Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query443
224090744404 predicted protein [Populus trichocarpa] 0.911 1.0 0.819 0.0
359482097458 PREDICTED: aspartic proteinase nepenthes 0.986 0.954 0.761 0.0
255581508407 Aspartic proteinase nepenthesin-2 precur 0.914 0.995 0.786 0.0
449440014449 PREDICTED: aspartic proteinase nepenthes 1.0 0.986 0.721 0.0
225449446436 PREDICTED: aspartic proteinase nepenthes 0.920 0.935 0.710 1e-175
147821993429 hypothetical protein VITISV_016757 [Viti 0.920 0.951 0.708 1e-174
255581545442 Aspartic proteinase nepenthesin-1 precur 0.948 0.950 0.678 1e-168
356523171442 PREDICTED: aspartic proteinase nepenthes 0.952 0.954 0.678 1e-167
307136234412 aspartic proteinase nepenthesin-1 precur 0.927 0.997 0.676 1e-162
224101015440 predicted protein [Populus trichocarpa] 0.905 0.911 0.670 1e-158
>gi|224090744|ref|XP_002309070.1| predicted protein [Populus trichocarpa] gi|222855046|gb|EEE92593.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/405 (81%), Positives = 367/405 (90%), Gaps = 1/405 (0%)

Query: 39  VLILPLRTQEIPSGSFPRSPNKLPFHHNVSLTVSLTVGTPPQNVSMVLDTGSELSWLHCN 98
           +LILPL+TQ IPSGS PRSPNK PFHHNVSL VSLTVGTPPQNVSMV+DTGSELSWLHCN
Sbjct: 1   MLILPLKTQVIPSGSVPRSPNKPPFHHNVSLIVSLTVGTPPQNVSMVIDTGSELSWLHCN 60

Query: 99  NTRYSYPNAFDPNLSSSYKPVTCSSPTCVNRTRDFTIPVSCDNNSLCHATLSYADASSSE 158
            T  SYP  FDP  S+SY+ + CSSPTC NRT+DF IP SCD+N+LCHATLSYADASSS+
Sbjct: 61  KT-LSYPTTFDPTRSTSYQTIPCSSPTCTNRTQDFPIPASCDSNNLCHATLSYADASSSD 119

Query: 159 GNLASDQFFIGSSEISGLVFGCMDSVFSSSSDEDGKNTGLMGMNRGSLSFVSQMGFPKFS 218
           GNLASD F IGSS+ISGLVFGCMDSVFSS+SDED K+TGLMGMNRGSLSFVSQ+GFPKFS
Sbjct: 120 GNLASDVFHIGSSDISGLVFGCMDSVFSSNSDEDSKSTGLMGMNRGSLSFVSQLGFPKFS 179

Query: 219 YCISGADFSGLLLLGDADLPWLLPLNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDKLLP 278
           YCISG DFSGLLLLG+++L W +PLNYTPLIQ++TPLPYFDRVAYTVQLEGIKVLDKLLP
Sbjct: 180 YCISGTDFSGLLLLGESNLTWSVPLNYTPLIQISTPLPYFDRVAYTVQLEGIKVLDKLLP 239

Query: 279 IPRSVFVPDHTGAGQTMVDSGTQFTFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGA 338
           IP+S F PDHTGAGQTMVDSGTQFTFLLGP Y ALR+ FLNQT+S+L+VLED +FVFQGA
Sbjct: 240 IPKSTFEPDHTGAGQTMVDSGTQFTFLLGPVYNALRSAFLNQTSSVLRVLEDPDFVFQGA 299

Query: 339 MDLCYRVPQNQSRLPQLPAVSLVFRGAEMSVSGDRLLYRAPGEVRGIDSVYCFTFGNSDL 398
           MDLCY VP +Q  LP LP V+LVFRGAEM+VSGDR+LYR PGE+RG DSV+C +FGNSDL
Sbjct: 300 MDLCYLVPLSQRVLPLLPTVTLVFRGAEMTVSGDRVLYRVPGELRGNDSVHCLSFGNSDL 359

Query: 399 LGVEAYVIGHHHQQNVWMEFDLERSRIGMAQVRCDLAGQRFGVGL 443
           LGVEAYVIGHHHQQNVWMEFDLE+SRIG+AQVRCDLAGQRFGV L
Sbjct: 360 LGVEAYVIGHHHQQNVWMEFDLEKSRIGLAQVRCDLAGQRFGVAL 404

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359482097|ref|XP_002271077.2| PREDICTED: aspartic proteinase nepenthesin-1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255581508|ref|XP_002531560.1| Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis] gi|223528821|gb|EEF30826.1| Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449440014|ref|XP_004137780.1| PREDICTED: aspartic proteinase nepenthesin-1-like [Cucumis sativus] gi|449483406|ref|XP_004156582.1| PREDICTED: aspartic proteinase nepenthesin-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225449446|ref|XP_002283126.1| PREDICTED: aspartic proteinase nepenthesin-2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147821993|emb|CAN70318.1| hypothetical protein VITISV_016757 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255581545|ref|XP_002531578.1| Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis] gi|223528808|gb|EEF30814.1| Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356523171|ref|XP_003530215.1| PREDICTED: aspartic proteinase nepenthesin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|307136234|gb|ADN34070.1| aspartic proteinase nepenthesin-1 precursor [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|224101015|ref|XP_002312106.1| predicted protein [Populus trichocarpa] gi|222851926|gb|EEE89473.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query443
TAIR|locus:2185173453 PCS1 "PROMOTION OF CELL SURVIV 0.916 0.896 0.669 1.1e-144
TAIR|locus:2043245442 AT2G39710 [Arabidopsis thalian 0.948 0.950 0.605 2.6e-134
TAIR|locus:2013865430 AT1G66180 [Arabidopsis thalian 0.916 0.944 0.371 2.5e-65
TAIR|locus:2169886442 AT5G37540 [Arabidopsis thalian 0.920 0.923 0.351 5.5e-61
TAIR|locus:2056916461 AT2G03200 [Arabidopsis thalian 0.787 0.757 0.295 6.5e-35
TAIR|locus:2031225483 AT1G25510 [Arabidopsis thalian 0.733 0.672 0.308 3.7e-32
TAIR|locus:2102335452 AT3G25700 [Arabidopsis thalian 0.857 0.840 0.293 1.1e-30
TAIR|locus:2017799484 AT1G79720 [Arabidopsis thalian 0.532 0.487 0.332 1.4e-30
TAIR|locus:2076745483 AT3G61820 [Arabidopsis thalian 0.749 0.687 0.310 2.3e-30
TAIR|locus:2095042500 ASPG1 "ASPARTIC PROTEASE IN GU 0.733 0.65 0.295 5.5e-30
TAIR|locus:2185173 PCS1 "PROMOTION OF CELL SURVIVAL 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1414 (502.8 bits), Expect = 1.1e-144, P = 1.1e-144
 Identities = 277/414 (66%), Positives = 318/414 (76%)

Query:    35 SSPDVLILPLRTQEIPSGSFPRSPNKLPFHHNVSLTVSLTVGTPPQNVSMVLDTGSELSW 94
             SS   L+LPL+T+  P+   P   +KL FHHNV+LTV+LTVGTPPQN+SMV+DTGSELSW
Sbjct:    41 SSSQTLVLPLKTRITPTDHRPT--DKLHFHHNVTLTVTLTVGTPPQNISMVIDTGSELSW 98

Query:    95 LHCNNTRYSYP-NAFDPNLSSSYKPVTCSSPTCVNRTRDFTIPVSCDNNSLCHATLSYAD 153
             L CN +    P N FDP  SSSY P+ CSSPTC  RTRDF IP SCD++ LCHATLSYAD
Sbjct:    99 LRCNRSSNPNPVNNFDPTRSSSYSPIPCSSPTCRTRTRDFLIPASCDSDKLCHATLSYAD 158

Query:   154 ASSSEGNLASDQFFIGSS-EISGLVFGCMDSVFSSSSDEDGKNTGLMGMNRGSLSFVSQM 212
             ASSSEGNLA++ F  G+S   S L+FGCM SV  S  +ED K TGL+GMNRGSLSF+SQM
Sbjct:   159 ASSSEGNLAAEIFHFGNSTNDSNLIFGCMGSVSGSDPEEDTKTTGLLGMNRGSLSFISQM 218

Query:   213 GFPKFSYCISGAD-FSXXXXXXXXXXXXXXXXNYTPLIQMTTPLPYFDRVAYTVQLEGIK 271
             GFPKFSYCISG D F                 NYTPLI+++TPLPYFDRVAYTVQL GIK
Sbjct:   219 GFPKFSYCISGTDDFPGFLLLGDSNFTWLTPLNYTPLIRISTPLPYFDRVAYTVQLTGIK 278

Query:   272 VLDKLLPIPRSVFVPDHTGAGQTMVDSGTQFTFLLGPAYAALRTEFLNQTASILKVLEDQ 331
             V  KLLPIP+SV VPDHTGAGQTMVDSGTQFTFLLGP Y ALR+ FLN+T  IL V ED 
Sbjct:   279 VNGKLLPIPKSVLVPDHTGAGQTMVDSGTQFTFLLGPVYTALRSHFLNRTNGILTVYEDP 338

Query:   332 NFVFQGAMDLCYRVPQNQSR---LPQLPAVSLVFRGAEMSVSGDRLLYRAPGEVRGIDSV 388
             +FVFQG MDLCYR+   + R   L +LP VSLVF GAE++VSG  LLYR P    G DSV
Sbjct:   339 DFVFQGTMDLCYRISPVRIRSGILHRLPTVSLVFEGAEIAVSGQPLLYRVPHLTVGNDSV 398

Query:   389 YCFTFGNSDLLGVEAYVIGHHHQQNVWMEFDLERSRIGMAQVRCDLAGQRFGVG 442
             YCFTFGNSDL+G+EAYVIGHHHQQN+W+EFDL+RSRIG+A V CD++GQR G+G
Sbjct:   399 YCFTFGNSDLMGMEAYVIGHHHQQNMWIEFDLQRSRIGLAPVECDVSGQRLGIG 452
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0008233 "peptidase activity" evidence=IDA
GO:0012501 "programmed cell death" evidence=IMP
TAIR|locus:2043245 AT2G39710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013865 AT1G66180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169886 AT5G37540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056916 AT2G03200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031225 AT1G25510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102335 AT3G25700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2017799 AT1G79720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076745 AT3G61820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095042 ASPG1 "ASPARTIC PROTEASE IN GUARD CELL 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LZL3PCS1L_ARATH3, ., 4, ., 2, 3, ., -0.69510.90740.8874yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.230.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query443
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 6e-67
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 5e-41
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 2e-36
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 5e-33
cd05489362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 2e-23
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 4e-15
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 1e-12
cd06096326 cd06096, Plasmepsin_5, Plasmepsins are a class of 2e-12
cd05470109 cd05470, pepsin_retropepsin_like, Cellular and ret 3e-10
cd05474295 cd05474, SAP_like, SAPs, pepsin-like proteinases s 1e-09
cd06097278 cd06097, Aspergillopepsin_like, Aspergillopepsin_l 2e-07
PTZ00165482 PTZ00165, PTZ00165, aspartyl protease; Provisional 3e-05
cd05485329 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsi 4e-04
cd05478317 cd05478, pepsin_A, Pepsin A, aspartic protease pro 5e-04
cd05486316 cd05486, Cathespin_E, Cathepsin E, non-lysosomal a 6e-04
cd05477318 cd05477, gastricsin, Gastricsins, asparate proteas 0.001
cd05488320 cd05488, Proteinase_A_fungi, Fungal Proteinase A , 0.002
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information 
 Score =  214 bits (547), Expect = 6e-67
 Identities = 110/371 (29%), Positives = 150/371 (40%), Gaps = 116/371 (31%)

Query: 70  TVSLTVGTPPQNVSMVLDTGSELSWLHCNNTRYSYPNAFDPNLSSSYKPVTCSSPTCVNR 129
            V+L++GTPPQ  S+++DTGS+L+W  C                                
Sbjct: 3   LVTLSIGTPPQPFSLIVDTGSDLTWTQC-------------------------------- 30

Query: 130 TRDFTIPVSCDNNSLCHATLSYADASSSEGNLASDQFFIGSSEIS--GLVFGCMDSVFSS 187
                          C    SY D SS+ G LA++ F  G S +S   + FGC      +
Sbjct: 31  ---------------CSYEYSYGDGSSTSGVLATETFTFGDSSVSVPNVAFGCGTD---N 72

Query: 188 SSDEDGKNTGLMGMNRGSLSFVSQMG--FPKFSYCISGADF---SGLLLLGDADLPWLLP 242
                G   G++G+ RG LS VSQ+G    KFSYC+   D    S  L+LGDA       
Sbjct: 73  EGGSFGGADGILGLGRGPLSLVSQLGSTGNKFSYCLVPHDDTGGSSPLILGDAADLGGSG 132

Query: 243 LNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDKLLPIPRSVFVPDHTGAGQTMVDSGTQF 302
           + YTPL++      Y     Y V LEGI V  K LPIP SVF  D  G+G T++DSGT  
Sbjct: 133 VVYTPLVKNPANPTY-----YYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTL 187

Query: 303 TFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGAMDLCYRVPQNQSRLPQLPAVSLVF 362
           T+L  PAY                                             P ++L F
Sbjct: 188 TYLPDPAY---------------------------------------------PDLTLHF 202

Query: 363 R-GAEMSVSGDRLLYRAPGEVRGIDSVYCFTFGNSDLLGVEAYVIGHHHQQNVWMEFDLE 421
             GA++ +  +               V C    +S   GV   ++G+  QQN  +E+DLE
Sbjct: 203 DGGADLELPPENYFVDVGEG------VVCLAILSSSSGGVS--ILGNIQQQNFLVEYDLE 254

Query: 422 RSRIGMAQVRC 432
            SR+G A   C
Sbjct: 255 NSRLGFAPADC 265

This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. Length = 265
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>gnl|CDD|133161 cd06097, Aspergillopepsin_like, Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>gnl|CDD|240300 PTZ00165, PTZ00165, aspartyl protease; Provisional Back     alignment and domain information
>gnl|CDD|133152 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>gnl|CDD|133145 cd05478, pepsin_A, Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>gnl|CDD|133153 cd05486, Cathespin_E, Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>gnl|CDD|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 443
PLN03146431 aspartyl protease family protein; Provisional 100.0
PTZ00165482 aspartyl protease; Provisional 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
PTZ00147453 plasmepsin-1; Provisional 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 100.0
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 100.0
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 100.0
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 99.96
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 99.9
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 99.88
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 98.17
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 97.12
PF1365090 Asp_protease_2: Aspartyl protease 96.51
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 95.67
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 95.27
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 94.85
PF08284135 RVP_2: Retroviral aspartyl protease; InterPro: IPR 94.31
cd0609586 RP_RTVL_H_like Retropepsin of the RTVL_H family of 92.97
PF11925370 DUF3443: Protein of unknown function (DUF3443); In 91.74
COG3577215 Predicted aspartyl protease [General function pred 91.55
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 89.17
PF1365090 Asp_protease_2: Aspartyl protease 83.98
PF00077100 RVP: Retroviral aspartyl protease The Prosite entr 83.92
TIGR03698107 clan_AA_DTGF clan AA aspartic protease, AF_0612 fa 81.24
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.9e-58  Score=460.10  Aligned_cols=333  Identities=29%  Similarity=0.523  Sum_probs=273.9

Q ss_pred             ceEEEEEEEeCCCCceEEEEEeCCCCeeEEeCCCC-CCC--CCCCCCCCCCCCcCccCCCCcccCCCCCCCCCCCCCCCC
Q 043762           66 NVSLTVSLTVGTPPQNVSMVLDTGSELSWLHCNNT-RYS--YPNAFDPNLSSSYKPVTCSSPTCVNRTRDFTIPVSCDNN  142 (443)
Q Consensus        66 ~~~y~~~i~vGtP~Q~~~l~lDTGSs~~wv~c~~c-~~~--~~~~y~p~~Sst~~~~~c~~~~c~~~~~~~~~~~~c~~~  142 (443)
                      +..|+++|+||||||++.|+|||||+++||+|..| .|.  .++.|||++|+|++.+.|+++.|.....    +..|..+
T Consensus        82 ~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~----~~~c~~~  157 (431)
T PLN03146         82 GGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGN----QASCSDE  157 (431)
T ss_pred             CccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCC----CCCCCCC
Confidence            55799999999999999999999999999999988 454  5689999999999999999999976433    3458777


Q ss_pred             CCCceEEecCCCCceeeeEEEEEEEeCCc-----cccceEEeEeeccccCCCCCCCCccccccccCCCcchhhhccc---
Q 043762          143 SLCHATLSYADASSSEGNLASDQFFIGSS-----EISGLVFGCMDSVFSSSSDEDGKNTGLMGMNRGSLSFVSQMGF---  214 (443)
Q Consensus       143 ~~c~~~i~Y~~g~~~~G~~~~D~v~i~~~-----~~~~~~fg~a~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~---  214 (443)
                      +.|.|.+.|+||+.+.|.+++|++++++.     +++++.|||++...+.  + ....+||||||+...|++.|+..   
T Consensus       158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~--f-~~~~~GilGLG~~~~Sl~sql~~~~~  234 (431)
T PLN03146        158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGT--F-DEKGSGIVGLGGGPLSLISQLGSSIG  234 (431)
T ss_pred             CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCC--c-cCCCceeEecCCCCccHHHHhhHhhC
Confidence            78999999999987899999999999873     5889999999876532  2 12589999999999999999764   


Q ss_pred             CeEEEEecCC----CCceeEEeCCCCCCCCC-CceeeeecccCCCCCCCCCeeEEEEEceEEecCeecCCCCCccccCCC
Q 043762          215 PKFSYCISGA----DFSGLLLLGDADLPWLL-PLNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDKLLPIPRSVFVPDHT  289 (443)
Q Consensus       215 ~~Fs~~L~~~----~~~G~l~fGg~d~~~~g-~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~  289 (443)
                      ++||+||.+.    ...|.|+||+. .++.+ .+.|+|++....      ..+|.|.|++|+||+++++++...+.  ..
T Consensus       235 ~~FSycL~~~~~~~~~~g~l~fG~~-~~~~~~~~~~tPl~~~~~------~~~y~V~L~gIsVgg~~l~~~~~~~~--~~  305 (431)
T PLN03146        235 GKFSYCLVPLSSDSNGTSKINFGTN-AIVSGSGVVSTPLVSKDP------DTFYYLTLEAISVGSKKLPYTGSSKN--GV  305 (431)
T ss_pred             CcEEEECCCCCCCCCCcceEEeCCc-cccCCCCceEcccccCCC------CCeEEEeEEEEEECCEECcCCccccc--cC
Confidence            6899999652    24799999995 44443 589999986421      26899999999999999987766553  23


Q ss_pred             CCCcEEEcccCccccccHHHHHHHHHHHHHHhhhhhhhccCccccccCCcccceecCCCCCCCCCCCeEEEEEeCcEEEE
Q 043762          290 GAGQTMVDSGTQFTFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGAMDLCYRVPQNQSRLPQLPAVSLVFRGAEMSV  369 (443)
Q Consensus       290 ~~~~ailDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~p~i~~~f~g~~~~i  369 (443)
                      +...+||||||++++||+++|++|.+++.+++......  ..    .+.+..||.....    ..+|+|+|+|+|.++.|
T Consensus       306 ~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~--~~----~~~~~~C~~~~~~----~~~P~i~~~F~Ga~~~l  375 (431)
T PLN03146        306 EEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVS--DP----QGLLSLCYSSTSD----IKLPIITAHFTGADVKL  375 (431)
T ss_pred             CCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccCC--CC----CCCCCccccCCCC----CCCCeEEEEECCCeeec
Confidence            34579999999999999999999999998888642111  11    1135689985321    57899999999999999


Q ss_pred             cCCceeEecCCcccCCCceEEEEEEcCCCCCCCceeecccceeeeEEEEeCCCCEEEEEcCCCCc
Q 043762          370 SGDRLLYRAPGEVRGIDSVYCFTFGNSDLLGVEAYVIGHHHQQNVWMEFDLERSRIGMAQVRCDL  434 (443)
Q Consensus       370 ~~~~~i~~~~~~~~~~~~~~C~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~c~~  434 (443)
                      ++++|+++.      ..+..|+++....    +.+|||+.|||++|+|||++++|||||+++|++
T Consensus       376 ~~~~~~~~~------~~~~~Cl~~~~~~----~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~  430 (431)
T PLN03146        376 QPLNTFVKV------SEDLVCFAMIPTS----SIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTK  430 (431)
T ss_pred             CcceeEEEc------CCCcEEEEEecCC----CceEECeeeEeeEEEEEECCCCEEeeecCCcCc
Confidence            999999974      3456899987643    359999999999999999999999999999986

>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses) Back     alignment and domain information
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements Back     alignment and domain information
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised Back     alignment and domain information
>COG3577 Predicted aspartyl protease [General function prediction only] Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query443
3vla_A413 Crystal Structure Of Edgp Length = 413 2e-08
3vlb_A413 Crystal Structure Of Xeg-Edgp Length = 413 2e-08
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp Length = 413 Back     alignment and structure 
Iteration: 1

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 92/394 (23%), Positives = 163/394 (41%), Gaps = 69/394 (17%)
Query: 77  TPPQNVSMVLDTGSELSWLHCNNTRYSYPNAFDPNLSSSYKPVTCSSPTC-----VNRTR 131
           TP  + ++V+D G    W+ C+             +SS+Y+PV C +  C     +    
Sbjct: 30  TPLVSENLVVDLGGRFLWVDCDQNY----------VSSTYRPVRCRTSQCSLSGSIACGD 79
Query: 132 DFTIPV-SCDNNSLCHATLSYADASSSEGNLASDQFFIGSSE--ISGLVFGCMDSVFSSS 188
            F  P   C+NN+      +    +++ G +A D   + S++   SG V      +FS +
Sbjct: 80  CFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCA 139
Query: 189 SDEDGKN-----TGLMGMNRGSLSFVSQMGFP-----KFSYCISGADFSXXXXXXXX--- 235
                +N      G+ G+ R  ++  SQ         KF+ C+SG+  S           
Sbjct: 140 PTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPY 199
Query: 236 -----XXXXXXXXNYTPLIQMTTPLPYFD-------RVAYTVQLEGIKVLDKLLPIPRSV 283
                         YTPL  +T P+            V Y + ++ IK+  K++ +  S+
Sbjct: 200 TFLPNIIVSDKTLTYTPL--LTNPVSTSATSTQGEPSVEYFIGVKSIKINSKIVALNTSL 257
Query: 284 FVPDHTGAGQTMVDSGTQFTFLLGPAYAALRTEFLNQTAS--ILKVLEDQNFVFQGAMDL 341
                 G G T + +   +T L    Y A+   F+ ++A+  I +V     F   GA   
Sbjct: 258 LSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPF---GA--- 311
Query: 342 CYRVPQNQS-RL-PQLPAVSLVFRGAEM--SVSG-DRLLYRAPGEVRGIDSVYCFTF--G 394
           C+      S RL P +P++ LV +   +  +++G + ++Y         D+V C     G
Sbjct: 312 CFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYIN-------DNVVCLGVVDG 364
Query: 395 NSDLLGVEAYVIGHHHQQNVWMEFDLERSRIGMA 428
            S+L    + VIG H  ++  ++FDL  SR+G +
Sbjct: 365 GSNLR--TSIVIGGHQLEDNLVQFDLATSRVGFS 396
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp Length = 413 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query443
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 1e-74
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 4e-73
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 6e-63
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 2e-21
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 2e-20
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 3e-20
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 4e-20
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 1e-19
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 5e-19
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 6e-19
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 2e-18
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 2e-18
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 6e-18
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 7e-18
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 1e-17
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 2e-17
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 2e-17
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 2e-17
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 3e-17
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 4e-17
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 7e-17
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 1e-16
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 1e-16
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 2e-16
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 2e-16
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 6e-15
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 9e-15
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 2e-14
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 2e-13
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 4e-13
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 1e-12
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 5e-09
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 2e-07
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 2e-04
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
 Score =  238 bits (608), Expect = 1e-74
 Identities = 81/412 (19%), Positives = 140/412 (33%), Gaps = 52/412 (12%)

Query: 53  SFPRSPNKLPFHHNVSL---TVSLTVGTPPQNVSMVLDTGSELSWLHCNNTRYSY---PN 106
           + P +   LP  ++ S      +L   TP   V +++D      W++C     S      
Sbjct: 4   TKPINLVVLPVQNDGSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAP 63

Query: 107 AFDPNLSSSYKPVTCSSPTCVNRTRDFTIPVSCDNNSLCHATLSYADASSSEGNLASDQF 166
                  S      C S    +R         C  N+    + +     +  G L  D  
Sbjct: 64  FCHSTQCSRANTHQCLSCPAASRP-------GCHKNTCGLMSTNPITQQTGLGELGEDVL 116

Query: 167 FIGSSE-----------ISGLVFGCMDSVFSSSSDEDGKNTGLMGMNRGSLSFVSQMG-- 213
            I +++           +   +F C  S F           G+ G+    +S  +Q+   
Sbjct: 117 AIHATQGSTQQLGPLVTVPQFLFSCAPS-FLVQKGLPRNTQGVAGLGHAPISLPNQLASH 175

Query: 214 ---FPKFSYCISGADFS-GLLLLGDADLPWLLPLNYTPLIQMT-TPLPYFDRVAYTVQLE 268
                +F+ C+S    S G ++ GDA        N      +  TPL    +  Y V++ 
Sbjct: 176 FGLQRQFTTCLSRYPTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVN 235

Query: 269 GIKVLDK-LLPIPRSVFVPDHTGAGQTMVDSGTQFTFLLGPAYAALRTEFLNQTASILKV 327
            I++    + P+ +       + +G TM+ + T    L    Y A    F  Q     +V
Sbjct: 236 SIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQV 295

Query: 328 LEDQNFVFQGAMDLCYRVPQNQSRLPQLPAVSLVFR---GAEMSVSGDRLLYRAPGEVRG 384
                F       LC+    N +++   P+V LV     G    +SG+ L+ +A      
Sbjct: 296 KSVAPF------GLCF----NSNKINAYPSVDLVMDKPNGPVWRISGEDLMVQAQ----- 340

Query: 385 IDSVYCFTFGNSDLLGVEAYVIGHHHQQNVWMEFDLERSRIGMAQVRCDLAG 436
              V C    N  +       +G    +   + FDL RSR+G +       G
Sbjct: 341 -PGVTCLGVMNGGMQPRAEITLGARQLEENLVVFDLARSRVGFSTSSLHSHG 391
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Length = 97 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Length = 241 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query443
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 100.0
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 100.0
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 100.0
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.86
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 99.67
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 94.78
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 91.99
3s8i_A148 Protein DDI1 homolog 1; protease, structural genom 88.0
1fmb_A104 EIAV protease; hydrolase (acid proteinase), RNA-di 85.87
2hs1_A99 HIV-1 protease; ultra-high resolution active site 85.37
3ec0_A99 Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1 81.37
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=2.7e-59  Score=462.83  Aligned_cols=305  Identities=23%  Similarity=0.352  Sum_probs=252.8

Q ss_pred             CCCCCccceEEEEEEEeCCCCceEEEEEeCCCCeeEEeCCCC-----CCCCCCCCCCCCCCCcCccCCCCcccCCCCCCC
Q 043762           59 NKLPFHHNVSLTVSLTVGTPPQNVSMVLDTGSELSWLHCNNT-----RYSYPNAFDPNLSSSYKPVTCSSPTCVNRTRDF  133 (443)
Q Consensus        59 ~~l~~~~~~~y~~~i~vGtP~Q~~~l~lDTGSs~~wv~c~~c-----~~~~~~~y~p~~Sst~~~~~c~~~~c~~~~~~~  133 (443)
                      .+|.++.+..|+++|+||||||+++|+|||||+++||+|..|     .|..|+.|||++|+|++...             
T Consensus        53 ~~l~n~~~~~Y~~~I~IGTP~Q~f~vi~DTGSs~lWV~s~~C~~~~~~C~~~~~y~~~~SsT~~~~~-------------  119 (383)
T 2x0b_A           53 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNG-------------  119 (383)
T ss_dssp             EEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTSHHHHTSCCBCGGGCTTCEEEE-------------
T ss_pred             EeeeecCCCEEEEEEEECCCCcEEEEEEeCCCCCeEEeccCCCCCcccccCCCCCCCCCCCcEEECC-------------
Confidence            457777888999999999999999999999999999999998     47788999999999998754             


Q ss_pred             CCCCCCCCCCCCceEEecCCCCceeeeEEEEEEEeCCccccceEEeEeeccccCCCCCCCCccccccccCCCcc------
Q 043762          134 TIPVSCDNNSLCHATLSYADASSSEGNLASDQFFIGSSEISGLVFGCMDSVFSSSSDEDGKNTGLMGMNRGSLS------  207 (443)
Q Consensus       134 ~~~~~c~~~~~c~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~fg~a~~~~~~~~~~~~~~~GIlGLg~~~~s------  207 (443)
                                 |.|.+.|++| ++.|.+++|+|++++.+++ +.|||++.+.+. .+....++||||||++.++      
T Consensus       120 -----------~~~~i~Yg~G-s~~G~~~~Dtv~ig~~~v~-~~Fg~a~~~~g~-~f~~~~~dGIlGLg~~~~s~~~~~~  185 (383)
T 2x0b_A          120 -----------TELTLRYSTG-TVSGFLSQDIITVGGITVT-QMFGEVTEMPAL-PFMLAEFDGVVGMGFIEQAIGRVTP  185 (383)
T ss_dssp             -----------EEEEEECSSC-EEEEEEEEEEEEETTEEEE-EEEEEEEECCHH-HHTTCSSSEEEECSCGGGCGGGCCC
T ss_pred             -----------cEEEEEcCCc-cEEEEEEeeEEEEcCceEE-EEEEEEEecCCc-ccccCCCceEeccCCCccccCCCCc
Confidence                       5699999999 5999999999999999999 999999986431 2345679999999998876      


Q ss_pred             ----hhhh--cccCeEEEEecCCC-----CceeEEeCCCCCC-CCCCceeeeecccCCCCCCCCCeeEEEEEceEEecCe
Q 043762          208 ----FVSQ--MGFPKFSYCISGAD-----FSGLLLLGDADLP-WLLPLNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDK  275 (443)
Q Consensus       208 ----~~~q--l~~~~Fs~~L~~~~-----~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~  275 (443)
                          +++|  +.+++||+||++..     .+|+|+|||+|++ |.|++.|+|+...         .+|+|.+++|+|+++
T Consensus       186 ~~~~l~~qg~i~~~~FS~~L~~~~~~~~~~~G~l~fGg~d~~~y~G~l~~~pv~~~---------~~w~v~l~~i~v~~~  256 (383)
T 2x0b_A          186 IFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKT---------GVWQIQMKGVSVGSS  256 (383)
T ss_dssp             HHHHHHTTTCCSSSEEEEEECCSCC----CCEEEEESSCCGGGEEEEEEEEEBSST---------TSCEEEECEEEESSC
T ss_pred             HHHHHHhCCCCCCCEEEEEEcCCCCcccCCCcEEEECCcChHHcCCceEEEEcCCC---------ceEEEEEeEEEeCCc
Confidence                3344  45699999998853     2899999999975 9999999999865         689999999999998


Q ss_pred             ecCCCCCccccCCCCCCcEEEcccCccccccHHHHHHHHHHHHHHhhhhhhhccCccccccCCcccceecCCCCCCCCCC
Q 043762          276 LLPIPRSVFVPDHTGAGQTMVDSGTQFTFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGAMDLCYRVPQNQSRLPQL  355 (443)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~ailDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~  355 (443)
                      .+.         +..+..+|+||||+++++|.+++++|.+++.    ...   ....     +..+|+..       +.+
T Consensus       257 ~~~---------~~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~----a~~---~~g~-----~~v~C~~~-------~~~  308 (383)
T 2x0b_A          257 TLL---------CEDGCLALVDTGASYISGSTSSIEKLMEALG----AKK---RLFD-----YVVKCNEG-------PTL  308 (383)
T ss_dssp             CCB---------STTCEEEEECTTCSSEEECHHHHHHHHHHHT----CEE---CSSC-----EEEEGGGT-------TTC
T ss_pred             eEE---------cCCCcEEEEcCCCceEEcCHHHHHHHHHHhC----Ccc---cCCc-----EEEecccc-------ccC
Confidence            742         3456789999999999999999999777762    211   1111     34567664       689


Q ss_pred             CeEEEEEeCcEEEEcCCceeEecCCcccCCCceEEE-EEEcCCC--CCCCceeecccceeeeEEEEeCCCCEEEEEcCC
Q 043762          356 PAVSLVFRGAEMSVSGDRLLYRAPGEVRGIDSVYCF-TFGNSDL--LGVEAYVIGHHHQQNVWMEFDLERSRIGMAQVR  431 (443)
Q Consensus       356 p~i~~~f~g~~~~i~~~~~i~~~~~~~~~~~~~~C~-~i~~~~~--~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~  431 (443)
                      |+|+|+|+|.+|+|++++|+++..    ..++..|+ +|+..+.  ...+.||||++|||++|+|||++++|||||+++
T Consensus       309 P~i~f~~~g~~~~l~~~~yi~~~~----~~~~~~C~~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~rIGfA~a~  383 (383)
T 2x0b_A          309 PDISFHLGGKEYTLTSADYVFQES----YSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR  383 (383)
T ss_dssp             CCEEEEETTEEEEECHHHHBCCCC----CCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred             ceEEEEECCEEEEECHHHhEeecc----CCCCCeEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEeEEEcC
Confidence            999999999999999999998741    12245898 4876542  123679999999999999999999999999975
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A* Back     alignment and structure
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ... Back     alignment and structure
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 443
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 7e-39
d2qp8a1387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 2e-26
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 6e-25
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 3e-24
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 7e-24
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 8e-24
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 8e-24
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 2e-23
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 7e-23
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 4e-22
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 6e-22
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 6e-22
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 1e-21
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 1e-21
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 1e-21
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 2e-21
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 2e-21
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 4e-21
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 6e-21
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 3e-20
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 2e-19
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 3e-18
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  142 bits (358), Expect = 7e-39
 Identities = 58/380 (15%), Positives = 126/380 (33%), Gaps = 45/380 (11%)

Query: 70  TVSLTVGTPPQNVSMVLDTGSELSWLHCNNTRYSYP---NAFDPNLSSSYKPVTCSSPTC 126
           T+    G       +VLD    L W  C+  +       ++    L+++Y    C +P+C
Sbjct: 17  TIPFHDGAS-----LVLDVAGPLVWSTCDGGQPPAEIPCSSPTCLLANAYPAPGCPAPSC 71

Query: 127 VNRTRDFTIPVSCDNNSLCHATLSYADASSSEGNLASDQFFIGSSEISGLVFGCMDSVFS 186
            +            +        +    + + G+L+  +F   +++ S  V      V +
Sbjct: 72  GS---------DKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLA 122

Query: 187 SSSDE------DGKNTGLMGMNRGSLSFVSQMG-FPKFSYCISGADFSGLLLLGDADLPW 239
           + +           +TG+ G+    L+  +Q+    K +        +G   +       
Sbjct: 123 ACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVAIFGGGP 182

Query: 240 LLPLNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDKLLPIPRSVFVPDHTGAGQTMVDSG 299
           +    +T  +  T  +      A+ +    I V D  +P+P           G  M+ + 
Sbjct: 183 VPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGAL-----ATGGVMLSTR 237

Query: 300 TQFTFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGA--MDLCYRVPQNQSRL--PQL 355
             +  L    Y  L   F    A+            +      +CY      + L    +
Sbjct: 238 LPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAV 297

Query: 356 PAVSLVFR-GAEMSVSGDRLLYRAPGEVRGIDSVYCFTFGNSDLLGV-----EAYVIGHH 409
           P V L    G++ +++G   +              C  F     +        A ++G  
Sbjct: 298 PNVQLGLDGGSDWTMTGKNSMVDVK------QGTACVAFVEMKGVAAGDGRAPAVILGGA 351

Query: 410 HQQNVWMEFDLERSRIGMAQ 429
             ++  ++FD+E+ R+G ++
Sbjct: 352 QMEDFVLDFDMEKKRLGFSR 371
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query443
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 100.0
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 100.0
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 100.0
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 100.0
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 100.0
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 100.0
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 100.0
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 100.0
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 100.0
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 100.0
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 100.0
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 100.0
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 100.0
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 100.0
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 100.0
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 100.0
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 100.0
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 100.0
d4fiva_113 Feline immunodeficiency virus (FIV) protease {Feli 80.01
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.1e-53  Score=420.78  Aligned_cols=304  Identities=22%  Similarity=0.363  Sum_probs=247.6

Q ss_pred             CCCCCCccceEEEEEEEeCCCCceEEEEEeCCCCeeEEeCCCC---CCCCCCCCCCCCCCCcCccCCCCcccCCCCCCCC
Q 043762           58 PNKLPFHHNVSLTVSLTVGTPPQNVSMVLDTGSELSWLHCNNT---RYSYPNAFDPNLSSSYKPVTCSSPTCVNRTRDFT  134 (443)
Q Consensus        58 ~~~l~~~~~~~y~~~i~vGtP~Q~~~l~lDTGSs~~wv~c~~c---~~~~~~~y~p~~Sst~~~~~c~~~~c~~~~~~~~  134 (443)
                      ..+|.++.|.+|+++|+||||||+++|+|||||+++||+|..|   .|+.++.|||++|+|++...              
T Consensus        47 ~~~l~n~~d~~Y~~~i~iGtP~Q~~~vi~DTGSs~~Wv~~~~C~~~~~~~~~~yd~~~Sst~~~~~--------------  112 (370)
T d3psga_          47 DEPLENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATS--------------  112 (370)
T ss_dssp             CCTTGGGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEE--------------
T ss_pred             ccccccccCCEEEEEEEEcCCCeEEEEEEeCCCCCeEEECccCCCcccccccccCCCcccccccCC--------------
Confidence            5689999999999999999999999999999999999999888   56788999999999998764              


Q ss_pred             CCCCCCCCCCCceEEecCCCCceeeeEEEEEEEeCCccccceEEeEeeccccCCCCCCCCccccccccCCCcc------h
Q 043762          135 IPVSCDNNSLCHATLSYADASSSEGNLASDQFFIGSSEISGLVFGCMDSVFSSSSDEDGKNTGLMGMNRGSLS------F  208 (443)
Q Consensus       135 ~~~~c~~~~~c~~~i~Y~~g~~~~G~~~~D~v~i~~~~~~~~~fg~a~~~~~~~~~~~~~~~GIlGLg~~~~s------~  208 (443)
                                |.|.+.|++| ++.|.++.|++.+++.+++++.||++..... ........+||+|||++..+      +
T Consensus       113 ----------~~~~~~Yg~G-s~~G~~~~d~~~~~~~~~~~~~f~~~~~~~~-~~~~~~~~~Gi~gl~~~~~~~~~~~~~  180 (370)
T d3psga_         113 ----------QELSITYGTG-SMTGILGYDTVQVGGISDTNQIFGLSETEPG-SFLYYAPFDGILGLAYPSISASGATPV  180 (370)
T ss_dssp             ----------EEEEEESSSC-EEEEEEEEEEEEETTEEEEEEEEEEECSCCC-GGGGGCSCSEEEECSCGGGCGGGCCCH
T ss_pred             ----------CcEEEEeCCc-eEEEEEEEEEEeeeceeeeeeEEEEEeeccC-ceecccccccccccccCcccccCCCch
Confidence                      4699999999 7999999999999999999999999987654 23445678999999987654      2


Q ss_pred             hh----h--cccCeEEEEecCCC-CceeEEeCCCCCC-CCCCceeeeecccCCCCCCCCCeeEEEEEceEEecCeecCCC
Q 043762          209 VS----Q--MGFPKFSYCISGAD-FSGLLLLGDADLP-WLLPLNYTPLIQMTTPLPYFDRVAYTVQLEGIKVLDKLLPIP  280 (443)
Q Consensus       209 ~~----q--l~~~~Fs~~L~~~~-~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~  280 (443)
                      ..    |  +..+.|++|+.+.. .+|.|+|||+|++ +.++++|+|+...         .+|.|.++++.++++.+.. 
T Consensus       181 ~~~l~~~~~i~~~~fs~~l~~~~~~~g~l~~Gg~d~~~~~~~l~~~p~~~~---------~~w~v~~~~i~v~g~~~~~-  250 (370)
T d3psga_         181 FDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVE---------GYWQITLDSITMDGETIAC-  250 (370)
T ss_dssp             HHHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGGGBSSCCEEEECSEE---------TTEEEEECEEESSSSEEEC-
T ss_pred             hhhhhhhcccccceeEEEeecCCCCCceEecCCcCchhcccceeEEeeccc---------ceEEEEEeeEEeCCeEEec-
Confidence            22    2  44599999998764 6899999999976 9999999999876         6899999999999987753 


Q ss_pred             CCccccCCCCCCcEEEcccCccccccHHHHHHHHHHHHHHhhhhhhhccCccccccCCcccceecCCCCCCCCCCCeEEE
Q 043762          281 RSVFVPDHTGAGQTMVDSGTQFTFLLGPAYAALRTEFLNQTASILKVLEDQNFVFQGAMDLCYRVPQNQSRLPQLPAVSL  360 (443)
Q Consensus       281 ~~~~~~~~~~~~~ailDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~p~i~~  360 (443)
                              ..+..++|||||+++++|.+++++|.+++    .....  .+..     +...|+..       +.+|+|+|
T Consensus       251 --------~~~~~aiiDSGTs~~~lp~~~~~~i~~~l----~~~~~--~~~~-----~~~~C~~~-------~~~P~l~f  304 (370)
T d3psga_         251 --------SGGCQAIVDTGTSLLTGPTSAIANIQSDI----GASEN--SDGE-----MVISCSSI-------DSLPDIVF  304 (370)
T ss_dssp             --------TTCEEEEECTTCCSEEEEHHHHHHHHHHT----TCEEC--TTCC-----EECCGGGG-------GGCCCEEE
T ss_pred             --------CCCccEEEecCCceEeCCHHHHHHHHHHh----CCeee--cCCc-----EEEecccc-------CCCceEEE
Confidence                    34567999999999999999999976665    22111  1111     24456654       68999999


Q ss_pred             EEeCcEEEEcCCceeEecCCcccCCCceEEE-EEEcC--CCCCCCceeecccceeeeEEEEeCCCCEEEEEcCC
Q 043762          361 VFRGAEMSVSGDRLLYRAPGEVRGIDSVYCF-TFGNS--DLLGVEAYVIGHHHQQNVWMEFDLERSRIGMAQVR  431 (443)
Q Consensus       361 ~f~g~~~~i~~~~~i~~~~~~~~~~~~~~C~-~i~~~--~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~  431 (443)
                      +|+|.++.|+|++|+++.       .+ .|+ ++...  .....+.||||++|||++|+|||++++||||||+.
T Consensus       305 ~f~g~~~~l~~~~yi~~~-------~~-~c~~~~~~~~~~~~~~~~~ILG~~flr~~y~vfD~~~~~IGfAp~a  370 (370)
T d3psga_         305 TIDGVQYPLSPSAYILQD-------DD-SCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA  370 (370)
T ss_dssp             EETTEEEEECHHHHEEEC-------SS-CEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred             EECCEEEEEChHHeEEEc-------CC-eEEEEEEEcccCCCCCCcEEECHHhhcCEEEEEECCCCEEEEEecC
Confidence            999999999999999873       22 464 35432  22234679999999999999999999999999973
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure
>d4fiva_ b.50.1.1 (A:) Feline immunodeficiency virus (FIV) protease {Feline immunodeficiency virus [TaxId: 11673]} Back     information, alignment and structure