Citrus Sinensis ID: 043774

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-----
MGFQLAILFLILASAASLPSEHSIIGHDFNEFVSEERVFELFQRWKDKHGKAYKHTEEAERRFRNFKNNLEYVVEKKNNPGGHVVGLNKFADMSNEEFREIYLKKIQKPIGKAIGNAKSNLHKTVQSCEAPSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIKESYAPSPYSPPSEPPPLPSPPPPPPPSPSPTQCGDFSYCPSGETCCCIFGFLDFCWIYGCCPYENAVCCSGTQDCCPADYPICDIEEGLCLKKYGDYLGVAAKSRMLAKHKLPWTKIEETEKMHQSLQWKRNPFAAIR
ccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccEEEccEEEcccccHHHHHHHHHccEEEEEEccccccccccccEEccccccccccccEEEEEEEEcccccEEEEEEEcccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccEEEEEccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccc
cHHHHHHHHHHHHHHHHHHcccccccccHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHccccccccHcccccccccccEccccccccccEEccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccEcHHHHHHHcccccccccccHHHHHHHHHHcccEcEcccccccccccccccccccccEcEEEEEEccccHHHHHHHHHHHccEEEEEccccHHHHcccccEEccccccccccccEEEEEEEEEEEccEEEEEEEccEcccccEccEEEEEccccccccHHHcccccEEEEcccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccEEEEEccccccccEEcccccccccccccEEEccccccccccccccccHHcccccccccccccccccccccccccEccccccHccc
MGFQLAILFLILASaaslpsehsiighdfnefvSEERVFELFQRWKDkhgkaykhTEEAERRFRNFKNNLEYVVEKknnpgghvvglnkfadmsNEEFREIYLKKIQKPIGKAIGNAKSNLHKTvqsceapssldwrkrgivtpvkdqgscgscwsfsttgaIEGINALVTGdlislseqelvdcdttsygcdggymDYAFEWVInnggidtesdypytgvdgtcnitkeetkvvsidgykdvepsdsALLCAAVqqpisvgmvgsasdfqlytsgiyngdcsndpyyidHAVLIVGygsengedyWIVKnswgtswgidgYFYITRDTSLEYGKCAINAMasypikesyapspysppseppplpspppppppspsptqcgdfsycpsgetcccifgfldfcwiygccpyenavccsgtqdccpadypicdieeglclkKYGDYLGVAAKSRMLakhklpwtkieETEKMHQSLQwkrnpfaair
MGFQLAILFLILASAASLPSEHSIIGHDFNEFVSEERVFELFQRWKdkhgkaykhteeaerrfrnfKNNLEYVVEkknnpgghvvglNKFADMSNEEFREIYLKKIQKPIGKAIGNAKSNLHKTVQSceapssldwrkRGIVtpvkdqgscgSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIKESYAPSPYSPPSEPPPLPSPPPPPPPSPSPTQCGDFSYCPSGETCCCIFGFLDFCWIYGCCPYENAVCCSGTQDCCPADYPICDIEEGLCLKKYGDYLGVAAKSRMLAKHKLPWTKIEetekmhqslqwkrnpfaair
MGFQlailflilasaaslPSEHSIIGHDFNEFVSEERVFELFQRWKDKHGKAYKHTEEAERRFRNFKNNLEYVVEKKNNPGGHVVGLNKFADMSNEEFREIYLKKIQKPIGKAIGNAKSNLHKTVQSCEAPSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIKESYApspysppseppplpspppppppspspTQCGDFSYCPSGETCCCIFGFLDFCWIYGCCPYENAVCCSGTQDCCPADYPICDIEEGLCLKKYGDYLGVAAKSRMLAKHKLPWTKIEETEKMHQSLQWKRNPFAAIR
**FQLAILFLILASAASLPSEHSIIGHDFNEFVSEERVFELFQRWKDKHGKAYKHTEEAERRFRNFKNNLEYVVEKKNNPGGHVVGLNKFADMSNEEFREIYLKKIQKPIGKAIGNAKSNLHKTVQSCEAPSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYP**********************************CGDFSYCPSGETCCCIFGFLDFCWIYGCCPYENAVCCSGTQDCCPADYPICDIEEGLCLKKYGDYLGVAAKSRMLAKHKLPWTKI*********************
*GFQLAILFLILASAASLPSEHSIIGH*****VSEERVFELFQRWKDKHGKAYKHTEEAERRFRNFKNNLEYVVEKKNNPGGHVVGLNKFADMSNEEFREIYLK*********************QSCEAPSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPI*********************************CGDFSYCPSGETCCCIFGFLDFCWIYGCCPYENAVCCSGTQDCCPADYPICDIEEGLCLKKY*********************************QWKRNPF****
MGFQLAILFLILASAASLPSEHSIIGHDFNEFVSEERVFELFQRWKDKHGKAYKHTEEAERRFRNFKNNLEYVVEKKNNPGGHVVGLNKFADMSNEEFREIYLKKIQKPIGKAIGNAKSNLHKTVQSCEAPSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIKESY****************************QCGDFSYCPSGETCCCIFGFLDFCWIYGCCPYENAVCCSGTQDCCPADYPICDIEEGLCLKKYGDYLGVAAKSRMLAKHKLPWTKIEET********WKRNPFAAIR
*GFQLAILFLILASAASLPSEHSIIGHDFNEFVSEERVFELFQRWKDKHGKAYKHTEEAERRFRNFKNNLEYVVEKKNNPGGHVVGLNKFADMSNEEFREIYLKK***************LHKTVQSCEAPSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIKES***********************P**SPTQCGDFSYCPSGETCCCIFGFLDFCWIYGCCPYENAVCCSGTQDCCPADYPICDIEEGLCLKKYGDYLGVAAKSRMLAKHK************H**************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGFQLAILFLILASAASLPSEHSIIGHDFNEFVSEERVFELFQRWKDKHGKAYKHTEEAERRFRNFKNNLEYVVEKKNNPGGHVVGLNKFADMSNEEFREIYLKKIQKPIGKAIGNAKSNLHKTVQSCEAPSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIKESYAPSPYSPPSEPPPLPSPPPPPPPSPSPTQCGDFSYCPSGETCCCIFGFLDFCWIYGCCPYENAVCCSGTQDCCPADYPICDIEEGLCLKKYGDYLGVAAKSRMLAKHKLPWTKIEETEKMHQSLQWKRNPFAAIR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query485 2.2.26 [Sep-21-2011]
P43297462 Cysteine proteinase RD21a yes no 0.890 0.935 0.460 1e-107
P25776458 Oryzain alpha chain OS=Or yes no 0.847 0.897 0.465 1e-105
P25777466 Oryzain beta chain OS=Ory no no 0.884 0.920 0.454 2e-98
Q7XR52490 Cysteine protease 1 OS=Or no no 0.746 0.738 0.452 4e-91
O65493355 Xylem cysteine proteinase no no 0.698 0.954 0.455 6e-84
P20721346 Low-temperature-induced c N/A no 0.643 0.901 0.487 2e-83
Q9LM66356 Xylem cysteine proteinase no no 0.663 0.904 0.463 2e-81
P25251328 Cysteine proteinase COT44 N/A no 0.651 0.963 0.456 2e-81
Q94B08376 Germination-specific cyst no no 0.682 0.880 0.451 4e-81
P22895379 P34 probable thiol protea no no 0.670 0.857 0.469 2e-80
>sp|P43297|RD21A_ARATH Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1 Back     alignment and function desciption
 Score =  389 bits (1000), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/467 (46%), Positives = 282/467 (60%), Gaps = 35/467 (7%)

Query: 1   MGF---QLAILFLILASAASLPSEHSIIGHDFNEFVS------EERVFELFQRWKDKHGK 51
           MGF    +AILFL + + +S   + SII +D    VS      E  V  +++ W  KHGK
Sbjct: 1   MGFLKPTMAILFLAMVAVSS-AVDMSIISYDEKHGVSTTGGRSEAEVMSIYEAWLVKHGK 59

Query: 52  AYKHTE--EAERRFRNFKNNLEYVVEKKNNPGGHVVGLNKFADMSNEEFREIYL-KKIQK 108
           A       E +RRF  FK+NL +V E       + +GL +FAD++N+E+R  YL  K++K
Sbjct: 60  AQSQNSLVEKDRRFEIFKDNLRFVDEHNEKNLSYRLGLTRFADLTNDEYRSKYLGAKMEK 119

Query: 109 PIGKAIGNAKSNLHKTVQ-SCEAPSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGIN 167
                 G  +++L    +   E P S+DWRK+G V  VKDQG CGSCW+FST GA+EGIN
Sbjct: 120 K-----GERRTSLRYEARVGDELPESIDWRKKGAVAEVKDQGGCGSCWAFSTIGAVEGIN 174

Query: 168 ALVTGDLISLSEQELVDCDTT-SYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCN 226
            +VTGDLI+LSEQELVDCDT+ + GC+GG MDYAFE++I NGGIDT+ DYPY GVDGTC+
Sbjct: 175 QIVTGDLITLSEQELVDCDTSYNEGCNGGLMDYAFEFIIKNGGIDTDKDYPYKGVDGTCD 234

Query: 227 ITKEETKVVSIDGYKDVEP-SDSALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSND 285
             ++  KVV+ID Y+DV   S+ +L  A   QPIS+ +      FQLY SGI++G C   
Sbjct: 235 QIRKNAKVVTIDSYEDVPTYSEESLKKAVAHQPISIAIEAGGRAFQLYDSGIFDGSCGTQ 294

Query: 286 PYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYP 345
              +DH V+ VGYG+ENG+DYWIV+NSWG SWG  GY  + R+ +   GKC I    SYP
Sbjct: 295 ---LDHGVVAVGYGTENGKDYWIVRNSWGKSWGESGYLRMARNIASSSGKCGIAIEPSYP 351

Query: 346 IKESYAPSPYSPPSEPPPLPSPPPPPPPSPSPTQCGDFSYCPSGETCCCIFGFLDFCWIY 405
           IK               P    P PP P   PTQC  +  CP   TCCC+F +  +C+ +
Sbjct: 352 IKNG-----------ENPPNPGPSPPSPIKPPTQCDSYYTCPESNTCCCLFEYGKYCFAW 400

Query: 406 GCCPYENAVCCSGTQDCCPADYPICDIEEGLCLKKYGDYLGVAAKSR 452
           GCCP E A CC     CCP +YP+CD+++G CL        V A  R
Sbjct: 401 GCCPLEAATCCDDNYSCCPHEYPVCDLDQGTCLLSKNSPFSVKALKR 447

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: -
>sp|P25776|ORYA_ORYSJ Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2 Back     alignment and function description
>sp|P25777|ORYB_ORYSJ Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2 Back     alignment and function description
>sp|Q7XR52|CYSP1_ORYSJ Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2 Back     alignment and function description
>sp|O65493|XCP1_ARATH Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=1 Back     alignment and function description
>sp|P20721|CYSPL_SOLLC Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1 Back     alignment and function description
>sp|Q9LM66|XCP2_ARATH Xylem cysteine proteinase 2 OS=Arabidopsis thaliana GN=XCP2 PE=1 SV=2 Back     alignment and function description
>sp|P25251|CYSP4_BRANA Cysteine proteinase COT44 (Fragment) OS=Brassica napus PE=2 SV=1 Back     alignment and function description
>sp|Q94B08|GCP1_ARATH Germination-specific cysteine protease 1 OS=Arabidopsis thaliana GN=GCP1 PE=2 SV=2 Back     alignment and function description
>sp|P22895|P34_SOYBN P34 probable thiol protease OS=Glycine max PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query485
224079085494 predicted protein [Populus trichocarpa] 0.971 0.953 0.709 0.0
224116884503 predicted protein [Populus trichocarpa] 0.962 0.928 0.696 0.0
359483753501 PREDICTED: oryzain alpha chain-like [Vit 0.989 0.958 0.697 0.0
224116880498 predicted protein [Populus trichocarpa] 0.950 0.925 0.672 1e-171
146216002509 cysteine protease Cp5 [Actinidia delicio 0.985 0.939 0.651 1e-169
358345461475 Cysteine proteinase [Medicago truncatula 0.934 0.953 0.645 1e-166
356549192517 PREDICTED: cysteine proteinase RD21a-lik 0.981 0.920 0.583 1e-161
357439999514 Cysteine protease [Medicago truncatula] 0.921 0.869 0.602 1e-158
32396018502 cysteine protease [Anthurium andraeanum] 0.915 0.884 0.631 1e-154
297740510377 unnamed protein product [Vitis vinifera] 0.748 0.962 0.766 1e-150
>gi|224079085|ref|XP_002305743.1| predicted protein [Populus trichocarpa] gi|222848707|gb|EEE86254.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/479 (70%), Positives = 394/479 (82%), Gaps = 8/479 (1%)

Query: 15  AASLPSEHSIIGHDFNEFVSEERVFELFQRWKDKHGKAYKHTEEAERRFRNFKNNLEYVV 74
           ++SLPSE+SI+G+DF+E   +E + E+FQ+W+D+H KAYKH EEAE+RF NFK NL+Y++
Sbjct: 16  SSSLPSEYSIVGNDFSELPPDESIIEIFQQWRDRHQKAYKHAEEAEKRFGNFKRNLKYII 75

Query: 75  EK--KNNPGGHVVGLNKFADMSNEEFREIYLKKIQKPIGKAIGNAKSNLHKTVQSCEAPS 132
           EK  K     H VGLNKFAD+SNEEF+++YL K++KPI K   +A+    + +QSC+APS
Sbjct: 76  EKTGKETTLRHRVGLNKFADLSNEEFKQLYLSKVKKPINKTRIDAEDRSRRNLQSCDAPS 135

Query: 133 SLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSYGC 192
           SLDWRK+G+VT VKDQG CGSCWSFSTTGAIEGINA+VT DLISLSEQELVDCDTT+YGC
Sbjct: 136 SLDWRKKGVVTAVKDQGDCGSCWSFSTTGAIEGINAIVTSDLISLSEQELVDCDTTNYGC 195

Query: 193 DGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSALLC 252
           +GGYMDYAFEWVINNGGIDTE++YPYTGVDGTCN  KEE KVVSIDGYKDV+ +DSALLC
Sbjct: 196 EGGYMDYAFEWVINNGGIDTEANYPYTGVDGTCNTAKEEIKVVSIDGYKDVDETDSALLC 255

Query: 253 AAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNS 312
           AA QQPISVG+ GSA DFQLYT GIY+GDCS+DP  IDHAVLIVGYGSENGEDYWIVKNS
Sbjct: 256 AAAQQPISVGIDGSAIDFQLYTGGIYDGDCSDDPDDIDHAVLIVGYGSENGEDYWIVKNS 315

Query: 313 WGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIKESYA-----PSPYSPPSEPPPLPSP 367
           WGTSWGI+GYFYI R+T L YG CAINAMASYP KE+ A     P     P  PPP P  
Sbjct: 316 WGTSWGIEGYFYIKRNTDLPYGVCAINAMASYPTKEASAQSPTSPPSPPSPPPPPPPPPT 375

Query: 368 PPPPPPSPSPTQCGDFSYCPSGETCCCIFGFLDFCWIYGCCPYENAVCCSGTQDCCPADY 427
           P PPPPSP P+ CGDFSYCPS ETCCCI    D+C +YGCC YENAVCC+ +  CCP+DY
Sbjct: 376 PVPPPPSPQPSDCGDFSYCPSDETCCCILNVFDYCLVYGCCAYENAVCCADSVYCCPSDY 435

Query: 428 PICDIEEGLCLKKYGDYLGVAAKSRMLAKHKLPWTKIEETEKM-HQSLQWKRNPFAAIR 485
           PICD+EEGLCLK  GDYLGVAA  R +AKHK PWTK++E  K  H+ LQWKRNPFAA+R
Sbjct: 436 PICDVEEGLCLKGQGDYLGVAASKRHMAKHKFPWTKLQERAKTDHRVLQWKRNPFAAMR 494

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224116884|ref|XP_002317418.1| predicted protein [Populus trichocarpa] gi|222860483|gb|EEE98030.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359483753|ref|XP_002266308.2| PREDICTED: oryzain alpha chain-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224116880|ref|XP_002317417.1| predicted protein [Populus trichocarpa] gi|118488173|gb|ABK95906.1| unknown [Populus trichocarpa] gi|222860482|gb|EEE98029.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|146216002|gb|ABQ10203.1| cysteine protease Cp5 [Actinidia deliciosa] Back     alignment and taxonomy information
>gi|358345461|ref|XP_003636796.1| Cysteine proteinase [Medicago truncatula] gi|355502731|gb|AES83934.1| Cysteine proteinase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356549192|ref|XP_003542981.1| PREDICTED: cysteine proteinase RD21a-like [Glycine max] Back     alignment and taxonomy information
>gi|357439999|ref|XP_003590277.1| Cysteine protease [Medicago truncatula] gi|355479325|gb|AES60528.1| Cysteine protease [Medicago truncatula] Back     alignment and taxonomy information
>gi|32396018|gb|AAP41846.1| cysteine protease [Anthurium andraeanum] Back     alignment and taxonomy information
>gi|297740510|emb|CBI30692.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query485
TAIR|locus:2024362437 XBCP3 "xylem bark cysteine pep 0.632 0.702 0.531 2.2e-105
TAIR|locus:2825832462 RD21A "responsive to dehydrati 0.630 0.662 0.509 5.8e-105
TAIR|locus:2167821463 RD21B "esponsive to dehydratio 0.657 0.688 0.482 4.1e-102
TAIR|locus:2090614452 AT3G19390 [Arabidopsis thalian 0.637 0.683 0.510 8.2e-83
TAIR|locus:2122113355 XCP1 "xylem cysteine peptidase 0.663 0.907 0.468 8.5e-81
TAIR|locus:2030427356 XCP2 "xylem cysteine peptidase 0.663 0.904 0.466 3.7e-80
TAIR|locus:2117979356 AT4G23520 [Arabidopsis thalian 0.635 0.865 0.487 1.8e-78
TAIR|locus:2090629362 AT3G19400 [Arabidopsis thalian 0.641 0.859 0.482 6.2e-78
TAIR|locus:2152445346 SAG12 "senescence-associated g 0.637 0.893 0.459 2.4e-76
TAIR|locus:2128253371 AT4G11320 [Arabidopsis thalian 0.678 0.886 0.416 3.6e-73
TAIR|locus:2024362 XBCP3 "xylem bark cysteine peptidase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 841 (301.1 bits), Expect = 2.2e-105, Sum P(2) = 2.2e-105
 Identities = 169/318 (53%), Positives = 215/318 (67%)

Query:    34 SEERVFELFQRWKDKHGKAYKHTEEAERRFRNFKNNLEYVVEKKNNPGG-HVVGLNKFAD 92
             S + + ELF  W  KHGK Y   EE ++R + FK+N ++V +        + + LN FAD
Sbjct:    24 SSDDISELFDDWCQKHGKTYGSEEERQQRIQIFKDNHDFVTQHNLITNATYSLSLNAFAD 83

Query:    93 MSNEEFREIYLK-KIQKPIGKAIGNAKSNLHKTVQSCEAPSSLDWRKRGIVTPVKDQGSC 151
             +++ EF+   L   +  P    I  +K        S + P S+DWRK+G VT VKDQGSC
Sbjct:    84 LTHHEFKASRLGLSVSAP--SVIMASKGQ--SLGGSVKVPDSVDWRKKGAVTNVKDQGSC 139

Query:   152 GSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTT-SYGCDGGYMDYAFEWVINNGGI 210
             G+CWSFS TGA+EGIN +VTGDLISLSEQEL+DCD + + GC+GG MDYAFE+VI N GI
Sbjct:   140 GACWSFSATGAMEGINQIVTGDLISLSEQELIDCDKSYNAGCNGGLMDYAFEFVIKNHGI 199

Query:   211 DTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDS-ALLCAAVQQPISVGMVGSASD 269
             DTE DYPY   DGTC   K + KVV+ID Y  V+ +D  AL+ A   QP+SVG+ GS   
Sbjct:   200 DTEKDYPYQERDGTCKKDKLKQKVVTIDSYAGVKSNDEKALMEAVAAQPVSVGICGSERA 259

Query:   270 FQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRDT 329
             FQLY+SGI++G CS     +DHAVLIVGYGS+NG DYWIVKNSWG SWG+DG+ ++ R+T
Sbjct:   260 FQLYSSGIFSGPCSTS---LDHAVLIVGYGSQNGVDYWIVKNSWGKSWGMDGFMHMQRNT 316

Query:   330 SLEYGKCAINAMASYPIK 347
                 G C IN +ASYPIK
Sbjct:   317 ENSDGVCGINMLASYPIK 334
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA
GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS
GO:0005773 "vacuole" evidence=IDA
GO:0005783 "endoplasmic reticulum" evidence=IDA
TAIR|locus:2825832 RD21A "responsive to dehydration 21A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2167821 RD21B "esponsive to dehydration 21B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090614 AT3G19390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122113 XCP1 "xylem cysteine peptidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030427 XCP2 "xylem cysteine peptidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117979 AT4G23520 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090629 AT3G19400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152445 SAG12 "senescence-associated gene 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128253 AT4G11320 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P25776ORYA_ORYSJ3, ., 4, ., 2, 2, ., -0.46540.84740.8973yesno
P43297RD21A_ARATH3, ., 4, ., 2, 2, ., -0.46030.89070.9350yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.220.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_IV2709
hypothetical protein (494 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query485
pfam00112213 pfam00112, Peptidase_C1, Papain family cysteine pr 1e-113
cd02248210 cd02248, Peptidase_C1A, Peptidase C1A subfamily (M 1e-102
smart00645175 smart00645, Pept_C1, Papain family cysteine protea 5e-85
PTZ00200448 PTZ00200, PTZ00200, cysteine proteinase; Provision 2e-72
PTZ00203348 PTZ00203, PTZ00203, cathepsin L protease; Provisio 2e-64
PTZ00021489 PTZ00021, PTZ00021, falcipain-2; Provisional 4e-62
cd02619223 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS 1e-43
cd02620236 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B gro 7e-36
cd02621243 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; al 6e-34
cd02698239 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; th 8e-27
COG4870372 COG4870, COG4870, Cysteine protease [Posttranslati 4e-22
smart0084857 smart00848, Inhibitor_I29, Cathepsin propeptide in 2e-20
pfam0824658 pfam08246, Inhibitor_I29, Cathepsin propeptide inh 5e-20
smart0027751 smart00277, GRAN, Granulin 4e-14
PTZ00049693 PTZ00049, PTZ00049, cathepsin C-like protein; Prov 4e-12
PTZ00364548 PTZ00364, PTZ00364, dipeptidyl-peptidase I precurs 4e-12
pfam0039643 pfam00396, Granulin, Granulin 2e-11
PTZ004621004 PTZ00462, PTZ00462, Serine-repeat antigen protein; 3e-09
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 5e-05
PHA0173294 PHA01732, PHA01732, proline-rich protein 1e-04
PHA03419200 PHA03419, PHA03419, E4 protein; Provisional 2e-04
pfam05308248 pfam05308, Mito_fiss_reg, Mitochondrial fission re 6e-04
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 0.001
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 0.002
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 0.002
pfam07174 297 pfam07174, FAP, Fibronectin-attachment protein (FA 0.003
pfam0455457 pfam04554, Extensin_2, Extensin-like region 0.004
pfam01690 460 pfam01690, PLRV_ORF5, Potato leaf roll virus readt 0.004
>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease Back     alignment and domain information 
 Score =  331 bits (852), Expect = e-113
 Identities = 124/220 (56%), Positives = 147/220 (66%), Gaps = 10/220 (4%)

Query: 130 APSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTS 189
            P S DWR++G VTPVKDQG CGSCW+FS  GA+EG   + TG L+SLSEQ+LVDCDT +
Sbjct: 1   LPESFDWREKGAVTPVKDQGQCGSCWAFSAVGALEGRYCIKTGKLVSLSEQQLVDCDTGN 60

Query: 190 YGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSA 249
            GC+GG  D AFE++  NGGI TESDYPYT  DGTC   K  +K   I GY DV  +D  
Sbjct: 61  NGCNGGLPDNAFEYIKKNGGIVTESDYPYTAHDGTCKFKKSNSKYAKIKGYGDVPYNDEE 120

Query: 250 LLCAAV--QQPISVGMVGSASDFQLYTSGIYNG-DCSNDPYYIDHAVLIVGYGSENGEDY 306
            L AA+    P+SV +     DFQLY SG+Y   +CS     +DHAVLIVGYG+ENG  Y
Sbjct: 121 ALQAALAKNGPVSVAIDAYEDDFQLYKSGVYKHTECSG---ELDHAVLIVGYGTENGVPY 177

Query: 307 WIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPI 346
           WIVKNSWGT WG +GYF I R       +C I + ASYPI
Sbjct: 178 WIVKNSWGTDWGENGYFRIARGV----NECGIASEASYPI 213

Length = 213
>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W) Back     alignment and domain information
>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease Back     alignment and domain information
>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional Back     alignment and domain information
>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional Back     alignment and domain information
>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional Back     alignment and domain information
>gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase) Back     alignment and domain information
>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag) Back     alignment and domain information
>gnl|CDD|239112 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access Back     alignment and domain information
>gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity Back     alignment and domain information
>gnl|CDD|227207 COG4870, COG4870, Cysteine protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|214853 smart00848, Inhibitor_I29, Cathepsin propeptide inhibitor domain (I29) Back     alignment and domain information
>gnl|CDD|219764 pfam08246, Inhibitor_I29, Cathepsin propeptide inhibitor domain (I29) Back     alignment and domain information
>gnl|CDD|197621 smart00277, GRAN, Granulin Back     alignment and domain information
>gnl|CDD|240244 PTZ00049, PTZ00049, cathepsin C-like protein; Provisional Back     alignment and domain information
>gnl|CDD|240381 PTZ00364, PTZ00364, dipeptidyl-peptidase I precursor; Provisional Back     alignment and domain information
>gnl|CDD|215898 pfam00396, Granulin, Granulin Back     alignment and domain information
>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|222828 PHA01732, PHA01732, proline-rich protein Back     alignment and domain information
>gnl|CDD|223079 PHA03419, PHA03419, E4 protein; Provisional Back     alignment and domain information
>gnl|CDD|218549 pfam05308, Mito_fiss_reg, Mitochondrial fission regulator Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP) Back     alignment and domain information
>gnl|CDD|218146 pfam04554, Extensin_2, Extensin-like region Back     alignment and domain information
>gnl|CDD|216648 pfam01690, PLRV_ORF5, Potato leaf roll virus readthrough protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 485
KOG1542372 consensus Cysteine proteinase Cathepsin F [Posttra 100.0
PTZ00203348 cathepsin L protease; Provisional 100.0
PTZ00021489 falcipain-2; Provisional 100.0
PTZ00200448 cysteine proteinase; Provisional 100.0
KOG1543325 consensus Cysteine proteinase Cathepsin L [Posttra 100.0
cd02621243 Peptidase_C1A_CathepsinC Cathepsin C; also known a 100.0
cd02698239 Peptidase_C1A_CathepsinX Cathepsin X; the only pap 100.0
cd02620236 Peptidase_C1A_CathepsinB Cathepsin B group; compos 100.0
cd02248210 Peptidase_C1A Peptidase C1A subfamily (MEROPS data 100.0
PF00112219 Peptidase_C1: Papain family cysteine protease This 100.0
PTZ00364548 dipeptidyl-peptidase I precursor; Provisional 100.0
PTZ00049693 cathepsin C-like protein; Provisional 100.0
smart00645174 Pept_C1 Papain family cysteine protease. 100.0
cd02619223 Peptidase_C1 C1 Peptidase family (MEROPS database 100.0
PTZ004621004 Serine-repeat antigen protein; Provisional 100.0
KOG1544470 consensus Predicted cysteine proteinase TIN-ag [Ge 100.0
KOG429690 consensus Epithelin/granulin [Signal transduction 99.95
COG4870372 Cysteine protease [Posttranslational modification, 99.95
smart0027751 GRAN Granulin. 99.87
cd00585437 Peptidase_C1B Peptidase C1B subfamily (MEROPS data 99.86
PF0039643 Granulin: Granulin; InterPro: IPR000118 Metazoan g 99.73
PF0824658 Inhibitor_I29: Cathepsin propeptide inhibitor doma 99.64
PF03051438 Peptidase_C1_2: Peptidase C1-like family This fami 99.6
smart0084857 Inhibitor_I29 Cathepsin propeptide inhibitor domai 99.47
COG3579444 PepC Aminopeptidase C [Amino acid transport and me 98.76
KOG4128457 consensus Bleomycin hydrolases and aminopeptidases 97.11
PF13529144 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3 96.79
PF0812741 Propeptide_C1: Peptidase family C1 propeptide; Int 94.4
PF05543175 Peptidase_C47: Staphopain peptidase C47; InterPro: 93.4
PF14399317 Transpep_BrtH: NlpC/p60-like transpeptidase 81.89
PF1395619 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin syste 80.58
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=3.2e-79  Score=597.56  Aligned_cols=298  Identities=43%  Similarity=0.814  Sum_probs=263.7

Q ss_pred             HHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHhcC-CCCCeEEecccCCCCCHHHHHHHHhhccccccccccC
Q 043774           37 RVFELFQRWKDKHGKAYKHTEEAERRFRNFKNNLEYVVEKKN-NPGGHVVGLNKFADMSNEEFREIYLKKIQKPIGKAIG  115 (485)
Q Consensus        37 ~~~~~F~~f~~~~~k~Y~~~~E~~~R~~iF~~Nl~~I~~~N~-~~~s~~~g~N~FsDlt~eEf~~~~~~~~~~~~~~~~~  115 (485)
                      ...+.|..|+.+|+|+|.+.+|..+|+.||+.|++.+++++. ...+.++|+|+|||||+|||+++|++.+.. .....+
T Consensus        66 ~~~~~F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~d~gsA~yGvtqFSDlT~eEFkk~~l~~~~~-~~~~~~  144 (372)
T KOG1542|consen   66 GLEDSFKLFTIKFGRSYASREEHAHRLSIFKHNLLRAERLQENDPGSAEYGVTQFSDLTEEEFKKIYLGVKRR-GSKLPG  144 (372)
T ss_pred             chHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHhhhcCccccccCccchhhcCHHHHHHHhhccccc-cccCcc
Confidence            347899999999999999999999999999999999999988 445999999999999999999999887642 111111


Q ss_pred             CccccccccccCCCCCCceeccCCCCCCcccCCCCCcchHHHHHHHHHHHHHHHHhCCCcccChhHhhhccCCCCCCCCC
Q 043774          116 NAKSNLHKTVQSCEAPSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSYGCDGG  195 (485)
Q Consensus       116 ~~~~~~~~~~~~~~lP~s~DwR~~g~vtpVkdQg~CGsCwAfA~~~~lE~~~~i~~~~~~~LS~Q~l~dC~~~~~gC~GG  195 (485)
                      .. .... ......||++||||++|.||||||||+||||||||+++++|++++|++|++++||||||+||+..+.||+||
T Consensus       145 ~~-~~~~-~~~~~~lP~~fDWR~kgaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~~d~gC~GG  222 (372)
T KOG1542|consen  145 DA-AEAP-IEPGESLPESFDWRDKGAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDSCDNGCNGG  222 (372)
T ss_pred             cc-ccCc-CCCCCCCCcccchhccCCccccccCCcCcchhhhhhhhhhhhHHHhhcCcccccchhhhhcccCcCCcCCCC
Confidence            00 0111 123458999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHcCCcCCCCccccCCCCC-CccCCccCcceEEecceeecCCCHHHHHHHHH-cCCeEEEEeccCcccccc
Q 043774          196 YMDYAFEWVINNGGIDTESDYPYTGVDG-TCNITKEETKVVSIDGYKDVEPSDSALLCAAV-QQPISVGMVGSASDFQLY  273 (485)
Q Consensus       196 ~~~~a~~~~~~~~Gi~~e~~yPY~~~~~-~C~~~~~~~~~~~i~~y~~v~~~~~~l~~al~-~gPV~v~i~~~~~~f~~Y  273 (485)
                      .+.+||+|+++.+|+..|++|||++..+ .|...+ ...++.|++|..++.||+.|.+.|. +|||+|+|++  ..+|+|
T Consensus       223 l~~nA~~~~~~~gGL~~E~dYPY~g~~~~~C~~~~-~~~~v~I~~f~~l~~nE~~ia~wLv~~GPi~vgiNa--~~mQ~Y  299 (372)
T KOG1542|consen  223 LMDNAFKYIKKAGGLEKEKDYPYTGKKGNQCHFDK-SKIVVSIKDFSMLSNNEDQIAAWLVTFGPLSVGINA--KPMQFY  299 (372)
T ss_pred             ChhHHHHHHHHhCCccccccCCccccCCCccccch-hhceEEEeccEecCCCHHHHHHHHHhcCCeEEEEch--HHHHHh
Confidence            9999999999999999999999999888 998765 6677899999999999999998877 5999999997  479999


Q ss_pred             CCCeeeC---CCCCCCCccCeEEEEEEeeecC-CeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCceeeeeeeceee
Q 043774          274 TSGIYNG---DCSNDPYYIDHAVLIVGYGSEN-GEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPI  346 (485)
Q Consensus       274 ~sGIy~~---~c~~~~~~~~HaV~iVGyg~~~-g~~yWivkNSWG~~WGe~GY~ri~r~~~~~~~~CgI~~~~~yp~  346 (485)
                      .+||+.+   .|+.  ..++|||+|||||..+ .++|||||||||++|||+||+|+.||.    |.|||+.+++-+.
T Consensus       300 rgGV~~P~~~~Cs~--~~~~HaVLlvGyG~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG~----N~CGi~~mvss~~  370 (372)
T KOG1542|consen  300 RGGVSCPSKYICSP--KLLNHAVLLVGYGSSGYEKPYWIVKNSWGTSWGEKGYYKLCRGS----NACGIADMVSSAA  370 (372)
T ss_pred             cccccCCCcccCCc--cccCceEEEEeecCCCCCCceEEEECCccccccccceEEEeccc----cccccccchhhhh
Confidence            9999987   5765  3599999999999887 899999999999999999999999996    6999999987653

>PTZ00203 cathepsin L protease; Provisional Back     alignment and domain information
>PTZ00021 falcipain-2; Provisional Back     alignment and domain information
>PTZ00200 cysteine proteinase; Provisional Back     alignment and domain information
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access Back     alignment and domain information
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity Back     alignment and domain information
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag) Back     alignment and domain information
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W) Back     alignment and domain information
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification Back     alignment and domain information
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional Back     alignment and domain information
>PTZ00049 cathepsin C-like protein; Provisional Back     alignment and domain information
>smart00645 Pept_C1 Papain family cysteine protease Back     alignment and domain information
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase) Back     alignment and domain information
>PTZ00462 Serine-repeat antigen protein; Provisional Back     alignment and domain information
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only] Back     alignment and domain information
>KOG4296 consensus Epithelin/granulin [Signal transduction mechanisms] Back     alignment and domain information
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00277 GRAN Granulin Back     alignment and domain information
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC) Back     alignment and domain information
>PF00396 Granulin: Granulin; InterPro: IPR000118 Metazoan granulins [] are a family of cysteine-rich peptides of about 6 Kd which may have multiple biological activity Back     alignment and domain information
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively Back     alignment and domain information
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29) Back     alignment and domain information
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism] Back     alignment and domain information
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A Back     alignment and domain information
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A Back     alignment and domain information
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase Back     alignment and domain information
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query485
3u8e_A222 Crystal Structure Of Cysteine Protease From Bulbs O 8e-68
3tnx_A363 Structure Of The Precursor Of A Thermostable Varian 8e-66
1cqd_A221 The 2.1 Angstrom Structure Of A Cysteine Protease W 1e-64
1s4v_A229 The 2.0 A Crystal Structure Of The Kdel-Tailed Cyst 2e-63
1pci_A322 Procaricain Length = 322 2e-63
3p5w_A220 Actinidin From Actinidia Arguta Planch (Sarusashi) 3e-62
3p5u_A220 Actinidin From Actinidia Arguta Planch (Sarusashi) 3e-61
1iwd_A215 Proposed Amino Acid Sequence And The 1.63 Angstrom 3e-60
2fo5_A262 Crystal Structure Of Recombinant Barley Cysteine En 1e-59
1aec_A218 Crystal Structure Of Actinidin-E-64 Complex+ Length 2e-57
2b1m_A246 Crystal Structure Of A Papain-Fold Protein Without 9e-57
1cjl_A312 Crystal Structure Of A Cysteine Protease Proform Le 3e-56
1cs8_A316 Crystal Structure Of Procathepsin L Length = 316 1e-55
2act_A220 Crystallographic Refinement Of The Structure Of Act 3e-55
2pns_A208 1.9 Angstrom Resolution Crystal Structure Of A Plan 9e-54
1o0e_A208 1.9 Angstrom Crystal Structure Of A Plant Cysteine 1e-53
3hwn_A258 Cathepsin L With Az13010160 Length = 258 3e-53
1yal_A218 Carica Papaya Chymopapain At 1.7 Angstroms Resoluti 7e-53
7pck_A314 Crystal Structure Of Wild Type Human Procathepsin K 2e-52
3f75_A224 Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In 5e-52
3bcn_A209 Crystal Structure Of A Papain-Like Cysteine Proteas 2e-51
3qj3_A331 Structure Of Digestive Procathepsin L2 Proteinase F 2e-51
2bdz_A214 Mexicain From Jacaratia Mexicana Length = 214 1e-50
3qt4_A329 Structure Of Digestive Procathepsin L 3 Of Tenebrio 1e-50
2o6x_A310 Crystal Structure Of Procathepsin L1 From Fasciola 8e-50
1fh0_A221 Crystal Structure Of Human Cathepsin V Complexed Wi 1e-49
2c0y_A315 The Crystal Structure Of A Cys25ala Mutant Of Human 2e-49
1vsn_A215 Crystal Structure Of A Potent Small Molecule Inhibi 4e-49
3of8_A221 Structural Basis For Reversible And Irreversible In 4e-49
1ppo_A216 Determination Of The Structure Of Papaya Protease O 7e-49
1ppp_A212 Crystal Structure Of Papain-E64-C Complex. Binding 1e-48
2f7d_A215 A Mutant Rabbit Cathepsin K With A Nitrile Inhibito 1e-48
1meg_A216 Crystal Structure Of A Caricain D158e Mutant In Com 1e-48
3h89_A220 A Combined Crystallographic And Molecular Dynamics 1e-48
1pip_A212 Crystal Structure Of Papain-Succinyl-Gln-Val-Val-Al 1e-48
3h6s_A221 Strucure Of Clitocypin - Cathepsin V Complex Length 1e-48
1khp_A212 Monoclinic Form Of Papain/zlfg-dam Covalent Complex 1e-48
3hha_A220 Crystal Structure Of Cathepsin L In Complex With Az 2e-48
2nqd_B221 Crystal Structure Of Cysteine Protease Inhibitor, C 2e-48
3iv2_A220 Crystal Structure Of Mature Apo-Cathepsin L C25a Mu 9e-48
1u9v_A217 Crystal Structure Of The Cysteine Protease Human Ca 9e-48
8pch_A220 Crystal Structure Of Porcine Cathepsin H Determined 1e-47
1mem_A215 Crystal Structure Of Cathepsin K Complexed With A P 1e-47
2cio_A212 The High Resolution X-Ray Structure Of Papain Compl 1e-47
1stf_E212 The Refined 2.4 Angstroms X-Ray Crystal Structure O 1e-47
3ima_A212 Complex Strcuture Of Tarocystatin And Papain Length 1e-47
3bc3_A220 Exploring Inhibitor Binding At The S Subsites Of Ca 1e-47
3h7d_A215 The Crystal Structure Of The Cathepsin K Variant M5 2e-47
3kse_A220 Unreduced Cathepsin L In Complex With Stefin A Leng 2e-47
1snk_A214 Cathepsin K Complexed With Carbamate Derivatized No 3e-47
3ovz_A213 Cathepsin K In Complex With A Covalent Inhibitor Wi 2e-46
2vhs_A217 Cathsilicatein, A Chimera Length = 217 1e-44
1ms6_A222 Dipeptide Nitrile Inhibitor Bound To Cathepsin S. L 1e-44
3n3g_A217 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitri 2e-44
2f1g_A220 Cathepsin S In Complex With Non-Covalent 2-(Benzoxa 2e-44
3ovx_A218 Cathepsin S In Complex With A Covalent Inhibitor Wi 2e-44
2fq9_A225 Cathepsin S With Nitrile Inhibitor Length = 225 3e-44
2g6d_A217 Human Cathepsin S Mutant With Vinyl Sulfone Inhibit 4e-44
1gec_E216 Glycyl Endopeptidase-complex With Benzyloxycarbonyl 4e-44
1npz_A217 Crystal Structures Of Cathepsin S Inhibitor Complex 5e-44
2fye_A217 Mutant Human Cathepsin S With Irreversible Inhibito 5e-44
3iej_A222 Pyrazole-Based Cathepsin S Inhibitors With Arylalky 2e-43
3mpe_A220 Crystal Structure Of Human Cathepsin-S C25s Mutant 3e-43
3kwn_A219 Cathepsin S In Complex With Thioether Acetamide P3 3e-43
1glo_A217 Crystal Structure Of Cys25ser Mutant Of Human Cathe 4e-43
3ioq_A213 Crystal Structure Of The Carica Candamarcensis Cyst 6e-43
2p7u_A215 The Crystal Structure Of Rhodesain, The Major Cyste 3e-40
1ewp_A215 Cruzain Bound To Mor-Leu-Hpq Length = 215 2e-38
1aim_A215 Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluor 2e-38
1icf_A175 Crystal Structure Of Mhc Class Ii Associated P41 Ii 4e-38
3iut_A221 The Crystal Structure Of Cruzain In Complex With A 5e-38
3hd3_A215 High Resolution Crystal Structure Of Cruzain Bound 5e-38
1m6d_A214 Crystal Structure Of Human Cathepsin F Length = 214 2e-37
1yvb_A241 The Plasmodium Falciparum Cysteine Protease Falcipa 3e-37
1mhw_A175 Design Of Non-covalent Inhibitors Of Human Cathepsi 3e-37
3pnr_A240 Structure Of Pbicp-C In Complex With Falcipain-2 Le 3e-36
3bpm_A243 Crystal Structure Of Falcipain-3 With Its Inhibitor 1e-35
1xkg_A312 Crystal Structure Of The Major House Dust Mite Alle 2e-30
1jqp_A438 Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric 4e-30
3pdf_A441 Discovery Of Novel Cyanamide-Based Inhibitors Of Ca 4e-29
3d6s_A223 Crystal Structure Of Mite Allergen Der F 1 Length = 5e-29
2as8_A222 Crystal Structure Of Mature And Fully Active Der P 7e-26
3rvw_A222 Crystal Structure Of Der P 1 Complexed With Fab 4c1 1e-25
3f5v_A222 C2 Crystal Form Of Mite Allergen Der P 1 Length = 2 8e-25
1pbh_A317 Crystal Structure Of Human Recombinant Procathepsin 1e-15
1deu_A277 Crystal Structure Of Human Procathepsin X: A Cystei 6e-15
1gmy_A261 Cathepsin B Complexed With Dipeptidyl Nitrile Inhib 6e-15
3k9m_A254 Cathepsin B In Complex With Stefin A Length = 254 6e-15
3ai8_B256 Cathepsin B In Complex With The Nitroxoline Length 7e-15
4hwy_A340 Trypanosoma Brucei Procathepsin B Solved From 40 Fs 7e-15
3mor_A317 Crystal Structure Of Cathepsin B From Trypanosoma B 1e-14
3qsd_A254 Structure Of Cathepsin B1 From Schistosoma Mansoni 3e-14
3hhi_A325 Crystal Structure Of Cathepsin B From T. Brucei In 3e-14
1ef7_A242 Crystal Structure Of Human Cathepsin X Length = 242 5e-14
3cbj_A266 Chagasin-cathepsin B Complex Length = 266 6e-14
1cte_A254 Crystal Structures Of Recombinant Rat Cathepsin B A 3e-13
1cpj_A260 Crystal Structures Of Recombinant Rat Cathepsin B A 4e-13
1mir_A322 Rat Procathepsin B Length = 322 8e-13
1k3b_B164 Crystal Structure Of Human Dipeptidyl Peptidase I ( 8e-13
1qdq_A253 X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074 1e-10
1k3b_C69 Crystal Structure Of Human Dipeptidyl Peptidase I ( 2e-10
1ito_A256 Crystal Structure Analysis Of Bovine Spleen Catheps 2e-10
1sp4_B205 Crystal Structure Of Ns-134 In Complex With Bovine 1e-08
1huc_B205 The Refined 2.15 Angstroms X-Ray Crystal Structure 1e-08
3ch2_X265 Crystal Structure Analysis Of Sera5e From Plasmodiu 3e-08
2wbf_X265 Crystal Structure Analysis Of Sera5e From Plasmodiu 3e-08
3f75_P106 Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In 8e-06
1icf_B42 Crystal Structure Of Mhc Class Ii Associated P41 Ii 6e-04
2jyv_A72 Human Granulin F Length = 72 8e-04
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of Crocus Sativus At 1.3 A Resolution Length = 222 Back     alignment and structure 
Iteration: 1

 Score =  254 bits (649), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 131/223 (58%), Positives = 160/223 (71%), Gaps = 5/223 (2%)
Query: 130 APSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTS 189
           AP+S+DWRK+G VT VKDQG+CG CW+F  TGAIEGI+A+ TG LIS+SEQ++VDCDT  
Sbjct: 1   APASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXX 60
Query: 190 YGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSA 249
               GG  D AF WVI NGGI ++++YPYTGVDGTC++ K       IDGY +V  S SA
Sbjct: 61  XXXXGGDADDAFRWVITNGGIASDANYPYTGVDGTCDLNKP--IAARIDGYTNVPNSSSA 118
Query: 250 LLCAAVQQPISVGMVGSASDFQLYTS-GIYNG-DCSNDPYYIDHAVLIVGYGSE-NGEDY 306
           LL A  +QP+SV +  S++ FQLYT  GI+ G  CS+DP  +DH VLIVGYGS     DY
Sbjct: 119 LLDAVAKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTNADY 178
Query: 307 WIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIKES 349
           WIVKNSWGT WGIDGY  I R+T+   G CAI+A  SYP K +
Sbjct: 179 WIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYPTKST 221
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of Papain At 2.6 Angstroem Resolution Length = 363 Back     alignment and structure
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With Proline Specificity From Ginger Rhizome, Zingiber Officinale Length = 221 Back     alignment and structure
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine Endopeptidase Functioning In Programmed Cell Death Of Ricinus Communis Endosperm Length = 229 Back     alignment and structure
>pdb|1PCI|A Chain A, Procaricain Length = 322 Back     alignment and structure
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220 Back     alignment and structure
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220 Back     alignment and structure
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray Crystal Structure Of A Plant Cysteine Protease Ervatamin B: Insight Into The Structural Basis Of Its Stability And Substrate Specificity Length = 215 Back     alignment and structure
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine Endoprotease B Isoform 2 (Ep-B2) In Complex With Leupeptin Length = 262 Back     alignment and structure
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+ Length = 218 Back     alignment and structure
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The Catalytic Cysteine From Seeds Of Pachyrhizus Erosus Length = 246 Back     alignment and structure
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform Length = 312 Back     alignment and structure
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L Length = 316 Back     alignment and structure
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin At 1.7 Angstroms Resolution By Fast Fourier Least-Squares Methods Length = 220 Back     alignment and structure
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant Cysteine Protease Ervatamin-C Refinement With Cdna Derived Amino Acid Sequence Length = 208 Back     alignment and structure
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine Protease Ervatamin C Length = 208 Back     alignment and structure
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160 Length = 258 Back     alignment and structure
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution Length = 218 Back     alignment and structure
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K Length = 314 Back     alignment and structure
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex With Its Propeptide Length = 224 Back     alignment and structure
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease Ervatamin-A Complexed With Irreversible Inhibitor E-64 Length = 209 Back     alignment and structure
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From Tenebrio Molitor Larval Midgut Length = 331 Back     alignment and structure
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana Length = 214 Back     alignment and structure
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio Molitor Larval Midgut Length = 329 Back     alignment and structure
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola Hepatica Length = 310 Back     alignment and structure
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An Irreversible Vinyl Sulfone Inhibitor Length = 221 Back     alignment and structure
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human Procathepsin S Length = 315 Back     alignment and structure
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor Bound To Cathepsin K Length = 215 Back     alignment and structure
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible Inhibition Of Human Cathepsin L By Their Respective Dipeptidyl Glyoxal And Diazomethylketone Inhibitors Length = 221 Back     alignment and structure
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega Length = 216 Back     alignment and structure
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding Diversity Of E64-C To Papain S2 And S3 Subsites Length = 212 Back     alignment and structure
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor Length = 215 Back     alignment and structure
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex With E-64 Length = 216 Back     alignment and structure
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study Of Cathepsin-L Retro-Binding Inhibitors(Compound 4) Length = 220 Back     alignment and structure
>pdb|1PIP|A Chain A, Crystal Structure Of Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide Complex At 1.7 Angstroms Resolution: Noncovalent Binding Mode Of A Common Sequence Of Endogenous Thiol Protease Inhibitors Length = 212 Back     alignment and structure
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex Length = 221 Back     alignment and structure
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex Length = 212 Back     alignment and structure
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With Az12878478 Length = 220 Back     alignment and structure
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor, Chagasin, In Complex With Human Cathepsin L Length = 221 Back     alignment and structure
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant Length = 220 Back     alignment and structure
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin K In Complex With The Covalent Inhibitor Nvp-Abe854 Length = 217 Back     alignment and structure
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1 Angstrom Resolution: Location Of The Mini-Chain C-Terminal Carboxyl Group Defines Cathepsin H Aminopeptidase Function Length = 220 Back     alignment and structure
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent Vinyl Sulfone Inhibitor Length = 215 Back     alignment and structure
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed With Fragments Of The Trypanosoma Brucei Cysteine Protease Inhibitor Icp Length = 212 Back     alignment and structure
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of Recombinant Human Stefin B In Complex With The Cysteine Proteinase Papain: A Novel Type Of Proteinase Inhibitor Interaction Length = 212 Back     alignment and structure
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain Length = 212 Back     alignment and structure
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin L Length = 220 Back     alignment and structure
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In Compl Chondroitin-4-Sulfate Length = 215 Back     alignment and structure
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A Length = 220 Back     alignment and structure
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized Norleucine Aldehyde Length = 214 Back     alignment and structure
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A Ketoamide Warhead Length = 213 Back     alignment and structure
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera Length = 217 Back     alignment and structure
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S. Length = 222 Back     alignment and structure
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As Cathepsin S Inhibitors: N3, Not N1 Is Critically Important Length = 217 Back     alignment and structure
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent 2-(Benzoxazol-2-Ylamino)- Acetamide Length = 220 Back     alignment and structure
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An Aldehyde Warhead Length = 218 Back     alignment and structure
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor Length = 225 Back     alignment and structure
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra- 14009 Length = 217 Back     alignment and structure
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With Benzyloxycarbonyl-leucine-valine- Glycine-methylene Covalently Bound To Cysteine 25 Length = 216 Back     alignment and structure
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes Length = 217 Back     alignment and structure
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra- 14013 Length = 217 Back     alignment and structure
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As P1 Binding Elements Length = 222 Back     alignment and structure
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With Bound Drug Length = 220 Back     alignment and structure
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3 Inhibitor Length = 219 Back     alignment and structure
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S Length = 217 Back     alignment and structure
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine Protease Cms1ms2 In Complex With E-64 Length = 213 Back     alignment and structure
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine Protease Of T. Brucei Rhodesiense, Bound To Inhibitor K777 Length = 215 Back     alignment and structure
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq Length = 215 Back     alignment and structure
>pdb|1AIM|A Chain A, Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluoromethylketone Length = 215 Back     alignment and structure
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii Fragment In Complex With Cathepsin L Length = 175 Back     alignment and structure
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A Tetrafluorophenoxymethyl Ketone Inhibitor Length = 221 Back     alignment and structure
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The Vinyl Sulfone Inhibitor Smdc-256047 Length = 215 Back     alignment and structure
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F Length = 214 Back     alignment and structure
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2 Length = 241 Back     alignment and structure
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L. From The 96- Residue Proregion To Optimized Tripeptides Length = 175 Back     alignment and structure
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2 Length = 240 Back     alignment and structure
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor, Leupeptin Length = 243 Back     alignment and structure
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen Der P 1 In Its Pro Form At 1.61 A Resolution Length = 312 Back     alignment and structure
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric Cysteine Protease Of The Papain Family Length = 438 Back     alignment and structure
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin C Length = 441 Back     alignment and structure
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1 Length = 223 Back     alignment and structure
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1 Allergen Length = 222 Back     alignment and structure
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1 Length = 222 Back     alignment and structure
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1 Length = 222 Back     alignment and structure
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At 3.2 Angstrom Resolution Length = 317 Back     alignment and structure
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine Protease With The Proregion Covalently Linked To The Active Site Cysteine Length = 277 Back     alignment and structure
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor Length = 261 Back     alignment and structure
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A Length = 254 Back     alignment and structure
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline Length = 256 Back     alignment and structure
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs Free-electron Laser Pulse Data By Serial Femtosecond X-ray Crystallography Length = 340 Back     alignment and structure
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei Length = 317 Back     alignment and structure
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In Complex With Ca074 Inhibitor Length = 254 Back     alignment and structure
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex With Ca074 Length = 325 Back     alignment and structure
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X Length = 242 Back     alignment and structure
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex Length = 266 Back     alignment and structure
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 254 Back     alignment and structure
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 260 Back     alignment and structure
>pdb|1MIR|A Chain A, Rat Procathepsin B Length = 322 Back     alignment and structure
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added To An Endopeptidase Framework Creates The Machine For Activation Of Granular Serine Proteases Length = 164 Back     alignment and structure
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074 Complex Length = 253 Back     alignment and structure
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added To An Endopeptidase Framework Creates The Machine For Activation Of Granular Serine Proteases Length = 69 Back     alignment and structure
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B- E64c Complex Length = 256 Back     alignment and structure
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor Extends Along The Whole Active Site Cleft Length = 205 Back     alignment and structure
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of Human Liver Cathepsin B: The Structural Basis For Its Specificity Length = 205 Back     alignment and structure
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium Falciparum Length = 265 Back     alignment and structure
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium Falciparum With Loop 690-700 Ordered Length = 265 Back     alignment and structure
>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex With Its Propeptide Length = 106 Back     alignment and structure
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii Fragment In Complex With Cathepsin L Length = 42 Back     alignment and structure
>pdb|2JYV|A Chain A, Human Granulin F Length = 72 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query485
1pci_A322 Procaricain; zymogen, hydrolase, thiol protease; 3 1e-169
3qj3_A331 Cathepsin L-like protein; hydrolase, proteinase, l 1e-160
1by8_A314 Protein (procathepsin K); hydrolase(sulfhydryl pro 1e-160
2c0y_A315 Procathepsin S; proenzyme, proteinase, hydrolase, 1e-157
1xkg_A312 DER P I, major mite fecal allergen DER P 1; major 1e-154
1cs8_A316 Human procathepsin L; prosegment, propeptide, inhi 1e-153
2o6x_A310 Procathepsin L1, secreted cathepsin L 1; hydrolase 1e-152
3qt4_A329 Cathepsin-L-like midgut cysteine proteinase; hydro 1e-150
1ppo_A216 Protease omega; hydrolase(thiol protease); 1.80A { 1e-136
2b1m_A246 SPE31; papain-like, sugar binding protein; HET: NA 1e-134
1cqd_A221 Protein (protease II); cysteine protease, glycopro 1e-134
1iwd_A215 Ervatamin B; cysteine protease, alpha-beta protein 1e-133
3p5u_A220 Actinidin; SAD, cysteine proteinases, hydrolase; 1 1e-132
2fo5_A262 Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst 1e-132
1yal_A218 Chymopapain; hydrolase, thiol protease; 1.70A {Car 1e-132
1s4v_A229 Cysteine endopeptidase; KDEL ER retention signal, 1e-131
1m6d_A214 Cathepsin F, catsf; papain family cysteine proteas 1e-131
3ioq_A213 CMS1MS2; caricaceae, cysteine protease, papain fam 1e-131
2cio_A212 Papain; hydrolase/inhibitor, complex hydrolase/inh 1e-131
2bdz_A214 Mexicain; cysteine protease, peptidase_C1, papain- 1e-130
3i06_A215 Cruzipain; autocatalytic cleavage, glycoprotein, p 1e-128
2oul_A241 Falcipain 2; cysteine protease, inhibitor, macromo 1e-127
3kwz_A215 Cathepsin K; enzyme inhibitor, covalent reversible 1e-127
8pch_A220 Cathepsin H; hydrolase, protease, cysteine protein 1e-127
3bwk_A243 Cysteine protease falcipain-3; malaria, hydrolase; 1e-126
3f75_A224 Toxopain-2, cathepsin L protease; medical structur 1e-125
3ovx_A218 Cathepsin S; hydrolase, covalent inhibitor, aldehy 1e-125
2xu3_A220 Cathepsin L1; hydrolase, drug design, thiol protea 1e-123
3f5v_A222 DER P 1 allergen; allergy, asthma, DUST mites, gly 1e-121
1o0e_A208 Ervatamin C; plant cysteine protease, two domain, 1e-116
3pdf_A441 Cathepsin C, dipeptidyl peptidase 1; two domains, 1e-108
3u8e_A222 Papain-like cysteine protease; papain-like cystein 1e-107
2wbf_X265 Serine-repeat antigen protein; SERA, malaria, vacu 1e-104
1deu_A277 Procathepsin X; cysteine protease, proregion, pros 5e-88
3hhi_A325 Cathepsin B-like cysteine protease; occluding loop 5e-87
3qsd_A254 Cathepsin B-like peptidase (C01 family); cysteine 5e-82
3pbh_A317 Procathepsin B; thiol protease, cysteine protease, 3e-76
3ois_A291 Cysteine protease; alpha and beta, hydrolase; HET: 3e-71
3cbj_A266 Cathepsin B; cathepsin B, occluding loop, chagas d 1e-69
3f75_P106 Toxopain-2, cathepsin L propeptide; medical struct 1e-26
2l95_A80 Crammer, LP06209P; cysteine proteinase inhibitor, 2e-20
2jyt_A69 Granulin-5, granulin C; epithelin, human, stack of 4e-20
2jye_A72 Granulin A; epithelin, human, stack of hairpins, a 1e-19
2jyv_A72 Granulin-2, granulin F; granulin C, epithelin, hum 4e-19
3pw3_A383 Aminopeptidase C; bleomycin, cysteine proteinase f 2e-12
3pw3_A383 Aminopeptidase C; bleomycin, cysteine proteinase f 2e-08
1fwo_A35 Oryzain beta chain; beta-hairpin stack fold, granu 3e-08
2cb5_A453 Protein (bleomycin hydrolase); aminopeptidase, cys 2e-05
2e01_A457 Cysteine proteinase 1; bleomycin hydrolase, thiol 8e-05
>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1 Length = 322 Back     alignment and structure
 Score =  479 bits (1235), Expect = e-169
 Identities = 134/327 (40%), Positives = 183/327 (55%), Gaps = 10/327 (3%)

Query: 23  SIIGHDFNEFVSEERVFELFQRWKDKHGKAYKHTEEAERRFRNFKNNLEYVVEKKNNPG- 81
           SI+G+  ++  S ER+ +LF  W   H K Y++ +E   RF  FK+NL Y+ ++ N    
Sbjct: 3   SIVGYSQDDLTSTERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYI-DETNKKNN 61

Query: 82  GHVVGLNKFADMSNEEFREIYLKKIQKPIGKAIGNAKSNLHKTVQSCEAPSSLDWRKRGI 141
            + +GLN+FAD+SN+EF E Y+  +     +    +             P ++DWRK+G 
Sbjct: 62  SYWLGLNEFADLSNDEFNEKYVGSLIDATIE---QSYDEEFINEDIVNLPENVDWRKKGA 118

Query: 142 VTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSYGCDGGYMDYAF 201
           VTPV+ QGSCGSCW+FS    +EGIN + TG L+ LSEQELVDC+  S+GC GGY  YA 
Sbjct: 119 VTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKGGYPPYAL 178

Query: 202 EWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSD-SALLCAAVQQPIS 260
           E+V  N GI   S YPY    GTC   +    +V   G   V+P++   LL A  +QP+S
Sbjct: 179 EYVAKN-GIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVS 237

Query: 261 VGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGID 320
           V +      FQLY  GI+ G C      +D AV  VGYG   G+ Y ++KNSWGT+WG  
Sbjct: 238 VVVESKGRPFQLYKGGIFEGPCGTK---VDGAVTAVGYGKSGGKGYILIKNSWGTAWGEK 294

Query: 321 GYFYITRDTSLEYGKCAINAMASYPIK 347
           GY  I R      G C +   + YP K
Sbjct: 295 GYIRIKRAPGNSPGVCGLYKSSYYPTK 321
>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} Length = 331 Back     alignment and structure
>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A Length = 314 Back     alignment and structure
>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens} Length = 315 Back     alignment and structure
>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1 Length = 312 Back     alignment and structure
>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A* Length = 316 Back     alignment and structure
>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica} Length = 310 Back     alignment and structure
>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor} Length = 329 Back     alignment and structure
>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A* Length = 216 Back     alignment and structure
>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A* Length = 246 Back     alignment and structure
>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1 Length = 221 Back     alignment and structure
>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1 Length = 215 Back     alignment and structure
>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare} Length = 262 Back     alignment and structure
>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E* Length = 218 Back     alignment and structure
>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1 Length = 229 Back     alignment and structure
>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1 Length = 214 Back     alignment and structure
>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} Length = 213 Back     alignment and structure
>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ... Length = 212 Back     alignment and structure
>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana} Length = 214 Back     alignment and structure
>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ... Length = 215 Back     alignment and structure
>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A Length = 241 Back     alignment and structure
>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ... Length = 215 Back     alignment and structure
>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A* Length = 220 Back     alignment and structure
>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A* Length = 243 Back     alignment and structure
>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Length = 224 Back     alignment and structure
>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ... Length = 218 Back     alignment and structure
>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ... Length = 220 Back     alignment and structure
>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A* Length = 208 Back     alignment and structure
>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C* Length = 441 Back     alignment and structure
>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} Length = 222 Back     alignment and structure
>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X Length = 265 Back     alignment and structure
>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A Length = 277 Back     alignment and structure
>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} PDB: 3mor_A* Length = 325 Back     alignment and structure
>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A* Length = 254 Back     alignment and structure
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A Length = 317 Back     alignment and structure
>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa} Length = 291 Back     alignment and structure
>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ... Length = 266 Back     alignment and structure
>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Length = 106 Back     alignment and structure
>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic disorder P like protein, hydrolase; NMR {Drosophila melanogaster} Length = 80 Back     alignment and structure
>2jyt_A Granulin-5, granulin C; epithelin, human, stack of hairpins, alternative splicing, cytokine, glycoprotein, polymorphism, secreted; NMR {Homo sapiens} PDB: 2jyu_A Length = 69 Back     alignment and structure
>2jye_A Granulin A; epithelin, human, stack of hairpins, alternative splicing, cytokine, glycoprotein, polymorphism, secreted; NMR {Homo sapiens} Length = 72 Back     alignment and structure
>2jyv_A Granulin-2, granulin F; granulin C, epithelin, human, stack of hairpins, alternative splicing, cytokine, glycoprotein, polymorphism, secreted; NMR {Homo sapiens} Length = 72 Back     alignment and structure
>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis} Length = 383 Back     alignment and structure
>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis} Length = 383 Back     alignment and structure
>1fwo_A Oryzain beta chain; beta-hairpin stack fold, granulin/epithelin-like protein repeats, hydrolase; NMR {Synthetic} SCOP: g.3.16.1 Length = 35 Back     alignment and structure
>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease, SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cb5_A Length = 453 Back     alignment and structure
>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease, hydrolase; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A Length = 457 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query485
3tnx_A363 Papain; hydrolase, cytoplasm for recombinant expre 100.0
1pci_A322 Procaricain; zymogen, hydrolase, thiol protease; 3 100.0
3qj3_A331 Cathepsin L-like protein; hydrolase, proteinase, l 100.0
1by8_A314 Protein (procathepsin K); hydrolase(sulfhydryl pro 100.0
3qt4_A329 Cathepsin-L-like midgut cysteine proteinase; hydro 100.0
2c0y_A315 Procathepsin S; proenzyme, proteinase, hydrolase, 100.0
1cs8_A316 Human procathepsin L; prosegment, propeptide, inhi 100.0
2o6x_A310 Procathepsin L1, secreted cathepsin L 1; hydrolase 100.0
1xkg_A312 DER P I, major mite fecal allergen DER P 1; major 100.0
3pdf_A441 Cathepsin C, dipeptidyl peptidase 1; two domains, 100.0
3hhi_A325 Cathepsin B-like cysteine protease; occluding loop 100.0
1cqd_A221 Protein (protease II); cysteine protease, glycopro 100.0
3p5u_A220 Actinidin; SAD, cysteine proteinases, hydrolase; 1 100.0
1ppo_A216 Protease omega; hydrolase(thiol protease); 1.80A { 100.0
1yal_A218 Chymopapain; hydrolase, thiol protease; 1.70A {Car 100.0
1iwd_A215 Ervatamin B; cysteine protease, alpha-beta protein 100.0
3u8e_A222 Papain-like cysteine protease; papain-like cystein 100.0
1s4v_A229 Cysteine endopeptidase; KDEL ER retention signal, 100.0
3pbh_A317 Procathepsin B; thiol protease, cysteine protease, 100.0
2fo5_A262 Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst 100.0
2cio_A212 Papain; hydrolase/inhibitor, complex hydrolase/inh 100.0
3ioq_A213 CMS1MS2; caricaceae, cysteine protease, papain fam 100.0
3kwz_A215 Cathepsin K; enzyme inhibitor, covalent reversible 100.0
2b1m_A246 SPE31; papain-like, sugar binding protein; HET: NA 100.0
2bdz_A214 Mexicain; cysteine protease, peptidase_C1, papain- 100.0
1o0e_A208 Ervatamin C; plant cysteine protease, two domain, 100.0
3ovx_A218 Cathepsin S; hydrolase, covalent inhibitor, aldehy 100.0
2xu3_A220 Cathepsin L1; hydrolase, drug design, thiol protea 100.0
1m6d_A214 Cathepsin F, catsf; papain family cysteine proteas 100.0
3i06_A215 Cruzipain; autocatalytic cleavage, glycoprotein, p 100.0
3f75_A224 Toxopain-2, cathepsin L protease; medical structur 100.0
2oul_A241 Falcipain 2; cysteine protease, inhibitor, macromo 100.0
8pch_A220 Cathepsin H; hydrolase, protease, cysteine protein 100.0
3bwk_A243 Cysteine protease falcipain-3; malaria, hydrolase; 100.0
3f5v_A222 DER P 1 allergen; allergy, asthma, DUST mites, gly 100.0
3cbj_A266 Cathepsin B; cathepsin B, occluding loop, chagas d 100.0
3qsd_A254 Cathepsin B-like peptidase (C01 family); cysteine 100.0
1deu_A277 Procathepsin X; cysteine protease, proregion, pros 100.0
2wbf_X265 Serine-repeat antigen protein; SERA, malaria, vacu 100.0
3ois_A291 Cysteine protease; alpha and beta, hydrolase; HET: 100.0
2cb5_A453 Protein (bleomycin hydrolase); aminopeptidase, cys 100.0
2e01_A457 Cysteine proteinase 1; bleomycin hydrolase, thiol 100.0
3pw3_A383 Aminopeptidase C; bleomycin, cysteine proteinase f 100.0
2jye_A72 Granulin A; epithelin, human, stack of hairpins, a 99.92
2jyv_A72 Granulin-2, granulin F; granulin C, epithelin, hum 99.89
2jyt_A69 Granulin-5, granulin C; epithelin, human, stack of 99.89
3f75_P106 Toxopain-2, cathepsin L propeptide; medical struct 99.74
2l95_A80 Crammer, LP06209P; cysteine proteinase inhibitor, 99.67
1fwo_A35 Oryzain beta chain; beta-hairpin stack fold, granu 99.39
1i8x_A30 Granulin-1; two beta-hairpin stack, cytokine; NMR 99.2
1g26_A31 Granulin A, HGA; granulin/epithelin protein repeat 99.14
1pxv_A183 Cysteine protease; hydrolase; 1.80A {Staphylococcu 96.5
1x9y_A367 Cysteine proteinase; half-barrel, barrel-sandwich- 96.07
1cv8_A174 Staphopain; cysteine protease, thiol protease, pap 95.38
>3tnx_A Papain; hydrolase, cytoplasm for recombinant expression; 2.62A {Carica papaya} Back     alignment and structure
Probab=100.00  E-value=5.4e-84  Score=660.74  Aligned_cols=320  Identities=42%  Similarity=0.762  Sum_probs=273.4

Q ss_pred             CCCccccccCCCCCCCChHHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHhcCCCCCeEEecccCCCCCHHH
Q 043774           18 LPSEHSIIGHDFNEFVSEERVFELFQRWKDKHGKAYKHTEEAERRFRNFKNNLEYVVEKKNNPGGHVVGLNKFADMSNEE   97 (485)
Q Consensus        18 ~~~~~~i~~~~~~~~~~~~~~~~~F~~f~~~~~k~Y~~~~E~~~R~~iF~~Nl~~I~~~N~~~~s~~~g~N~FsDlt~eE   97 (485)
                      -..+++|+++...++.+++++.++|++|+++|+|+|.+.+|+.+||+||++|+++|++||+.+.+|++|+|+|+|||.||
T Consensus        42 ~~~~~s~~~y~~~dl~s~~~~~~lf~~f~~~~~K~Y~~~~E~~~R~~iF~~Nl~~I~~~N~~~~sy~~g~N~FaDlT~eE  121 (363)
T 3tnx_A           42 DKMDFSIVGYSQNDLTSTERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKNNSYWLGLNVFADMSNDE  121 (363)
T ss_dssp             ------------CCSSCHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHTTSCCSEEECSCTTTTSCHHH
T ss_pred             CcccccccCCChhhhcCHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEeccccccCCHHH
Confidence            44579999999999999999999999999999999999999999999999999999999998899999999999999999


Q ss_pred             HHHHHhhccccccccccCCccccccccccCCCCCCceeccCCCCCCcccCCCCCcchHHHHHHHHHHHHHHHHhCCCccc
Q 043774           98 FREIYLKKIQKPIGKAIGNAKSNLHKTVQSCEAPSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISL  177 (485)
Q Consensus        98 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~s~DwR~~g~vtpVkdQg~CGsCwAfA~~~~lE~~~~i~~~~~~~L  177 (485)
                      |++++++...........  ...........+||++||||++|+|+||||||.||||||||++++||+++++++++++.|
T Consensus       122 f~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~lP~s~DWR~~g~VtpVkdQG~CGSCWAFsa~~alE~~~~i~tg~~~~L  199 (363)
T 3tnx_A          122 FKEKYTGSIAGNYTTTEL--SYEEVLNDGDVNIPEYVDWRQKGAVTPVKNQGSCGSAWAFSAVSTIESIIKIRTGNLNEY  199 (363)
T ss_dssp             HHHHHSCSSCSCCCCSSS--SSSCCCCCSCCCCCSCEEGGGGTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCB
T ss_pred             HHHHhccccccccccccc--ccccccCcccCCCCcceecccCCCCCCCccCCcCCchhhhhhcccHHHHHHHHcCCCCCc
Confidence            999998765332221110  001111122458999999999999999999999999999999999999999999999999


Q ss_pred             ChhHhhhccCCCCCCCCCchHHHHHHHHHcCCcCCCCccccCCCCCCccCCccCcceEEecceeecC-CCHHHHHHHHHc
Q 043774          178 SEQELVDCDTTSYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVE-PSDSALLCAAVQ  256 (485)
Q Consensus       178 S~Q~l~dC~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~v~-~~~~~l~~al~~  256 (485)
                      |+|+|+||+..+.||+||++..|++|+.++ ||++|++|||.+.++.|...........+.+|..++ .++.+++.++++
T Consensus       200 SeQ~LvdC~~~~~GC~GG~~~~a~~yi~~~-Gi~~e~~yPY~~~~~~c~~~~~~~~~~~~~~~~~~~~~~e~~l~~~v~~  278 (363)
T 3tnx_A          200 SEQELLDCDRRSYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIAN  278 (363)
T ss_dssp             CHHHHHHHCTTSCTTBCCCHHHHHHHHHHT-CBCBTTTSCCCSSCCCCCGGGGCSCSBCCCEEEEECSSCHHHHHHHHTT
T ss_pred             CHHHHhcccCCCCCCCCCChHHHHhHHHhc-CccccccCCCcCcCCCcccCCCCCceeeccceEEcchhhHHHHHHHHHc
Confidence            999999999988999999999999998766 999999999999888887554444555677777776 788999999999


Q ss_pred             CCeEEEEeccCccccccCCCeeeCCCCCCCCccCeEEEEEEeeecCCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCce
Q 043774          257 QPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKC  336 (485)
Q Consensus       257 gPV~v~i~~~~~~f~~Y~sGIy~~~c~~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~ri~r~~~~~~~~C  336 (485)
                      |||+|+|++...+|++|++|||..+|+.   .+||||+|||||+    +|||||||||++|||+|||||+|+.+...|+|
T Consensus       279 gPvsvai~a~~~~F~~Y~sGVy~~~~~~---~lnHaV~iVGyG~----~YWIVKNSWGt~WGe~GY~rI~Rg~~~~~~~C  351 (363)
T 3tnx_A          279 QPVSVVLEAAGKDFQLYRGGIFVGPCGN---KVDHAVAAVGYGP----NYILIRNSWGTGWGENGYIRIKRGTGNSYGVC  351 (363)
T ss_dssp             SCEEEEECCCSHHHHTEEEEEECCCCCS---CCCEEEEEEEEET----TEEEEECSBCTTSTBTTEEEEECCSCCSSCGG
T ss_pred             CCcEEEEEecchhhhCCCCCEECCCCCC---CCCeEEEEEEcCC----CcEEEEeCCCCccccCcEEEEEcCCCCCCCcC
Confidence            9999999988889999999999988876   5799999999986    59999999999999999999999988778999


Q ss_pred             eeeeeeceeee
Q 043774          337 AINAMASYPIK  347 (485)
Q Consensus       337 gI~~~~~yp~~  347 (485)
                      ||+++|+||++
T Consensus       352 GI~~~a~yPik  362 (363)
T 3tnx_A          352 GLYTSSFYPVK  362 (363)
T ss_dssp             GTTSCEEEEEC
T ss_pred             Cccceeeeccc
Confidence            99999999986
>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1 Back     alignment and structure
>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} SCOP: d.3.1.0 Back     alignment and structure
>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A Back     alignment and structure
>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor} Back     alignment and structure
>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens} Back     alignment and structure
>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A* Back     alignment and structure
>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica} Back     alignment and structure
>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1 Back     alignment and structure
>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C* Back     alignment and structure
>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} SCOP: d.3.1.0 PDB: 4hwy_A* 3mor_A* Back     alignment and structure
>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1 Back     alignment and structure
>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A* Back     alignment and structure
>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E* Back     alignment and structure
>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1 Back     alignment and structure
>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} SCOP: d.3.1.0 Back     alignment and structure
>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1 Back     alignment and structure
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A Back     alignment and structure
>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare} Back     alignment and structure
>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ... Back     alignment and structure
>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} SCOP: d.3.1.1 Back     alignment and structure
>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ... Back     alignment and structure
>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A* Back     alignment and structure
>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana} Back     alignment and structure
>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A* Back     alignment and structure
>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} SCOP: d.3.1.1 PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ... Back     alignment and structure
>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ... Back     alignment and structure
>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1 Back     alignment and structure
>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} SCOP: d.3.1.1 PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ... Back     alignment and structure
>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} SCOP: d.3.1.0 Back     alignment and structure
>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A Back     alignment and structure
>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A* Back     alignment and structure
>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A* Back     alignment and structure
>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ... Back     alignment and structure
>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} SCOP: d.3.1.0 PDB: 3s3q_A* 3s3r_A* Back     alignment and structure
>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A Back     alignment and structure
>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X Back     alignment and structure
>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa} Back     alignment and structure
>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease, SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cb5_A Back     alignment and structure
>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease, hydrolase; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A Back     alignment and structure
>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis} Back     alignment and structure
>2jye_A Granulin A; epithelin, human, stack of hairpins, alternative splicing, cytokine, glycoprotein, polymorphism, secreted; NMR {Homo sapiens} Back     alignment and structure
>2jyv_A Granulin-2, granulin F; granulin C, epithelin, human, stack of hairpins, alternative splicing, cytokine, glycoprotein, polymorphism, secreted; NMR {Homo sapiens} Back     alignment and structure
>2jyt_A Granulin-5, granulin C; epithelin, human, stack of hairpins, alternative splicing, cytokine, glycoprotein, polymorphism, secreted; NMR {Homo sapiens} PDB: 2jyu_A Back     alignment and structure
>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Back     alignment and structure
>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic disorder P like protein, hydrolase; NMR {Drosophila melanogaster} Back     alignment and structure
>1fwo_A Oryzain beta chain; beta-hairpin stack fold, granulin/epithelin-like protein repeats, hydrolase; NMR {Synthetic} SCOP: g.3.16.1 Back     alignment and structure
>1i8x_A Granulin-1; two beta-hairpin stack, cytokine; NMR {Synthetic} SCOP: g.3.16.1 PDB: 1qgm_A 1i8y_A Back     alignment and structure
>1g26_A Granulin A, HGA; granulin/epithelin protein repeats, beta-hairpin stack, cytokine; NMR {Synthetic} SCOP: g.3.16.1 Back     alignment and structure
>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP: d.3.1.1 PDB: 1y4h_A Back     alignment and structure
>1x9y_A Cysteine proteinase; half-barrel, barrel-sandwich-hybrid, hydrolase; 2.50A {Staphylococcus aureus} SCOP: d.3.1.1 d.17.1.4 Back     alignment and structure
>1cv8_A Staphopain; cysteine protease, thiol protease, papain family; HET: E64; 1.75A {Staphylococcus aureus} SCOP: d.3.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 485
d1cs8a_316 d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens 4e-66
d1yala_218 d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [ 6e-64
d1cqda_216 d.3.1.1 (A:) Proline-specific cysteine protease {G 4e-63
d1xkga1302 d.3.1.1 (A:4-305) Major mite fecal allergen der p 6e-63
d1m6da_214 d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [Ta 1e-62
d1s4va_224 d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor 6e-61
d1iwda_215 d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia 2e-58
d1ppoa_216 d.3.1.1 (A:) Caricain (protease omega) {Papaya (Ca 2e-58
d2oula1241 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falcip 2e-58
d1o0ea_208 d.3.1.1 (A:) Ervatamin C {East indian rosebay (Erv 3e-58
d1aeca_218 d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwi 2e-57
g8pch.1228 d.3.1.1 (P:,A:) Cathepsin H {Pig (Sus scrofa) [Tax 1e-56
d2r6na1215 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sa 3e-56
d2h7ja1217 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sa 6e-56
d1fh0a_221 d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens 2e-54
d1khqa_212 d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId 2e-54
d1gmya_254 d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens 3e-51
d1me4a_215 d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 56 3e-50
g1k3b.1233 d.3.1.1 (B:,C:) Cathepsin C (dipeptidyl peptidase 1e-44
d1deua_275 d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens 4e-43
d1fwoa_35 g.3.16.1 (A:) Oryzain beta chain {Rice (Oryza sati 2e-11
d3gcba_458 d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (S 6e-09
d3gcba_458 d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (S 9e-04
d2cb5a_453 d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapi 4e-08
d1cd9b2106 b.1.2.1 (B:108-213) Granulocyte colony-stimulating 0.003
>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]} Length = 316 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  213 bits (543), Expect = 4e-66
 Identities = 115/323 (35%), Positives = 165/323 (51%), Gaps = 21/323 (6%)

Query: 34  SEERVFELFQRWKDKHGKAYKHTEEAERRFRNFKNNLEYV----VEKKNNPGGHVVGLNK 89
            +  +   + +WK  H + Y   EE   R   ++ N++ +     E +       + +N 
Sbjct: 4   FDHSLEAQWTKWKAMHNRLYGMNEE-GWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNA 62

Query: 90  FADMSNEEFREIYLKKIQKPIGKAIGNAKSNLHKTVQSCEAPSSLDWRKRGIVTPVKDQG 149
           F DM++EEFR++      +         K  + +     EAP S+DWR++G VTPVK+QG
Sbjct: 63  FGDMTSEEFRQVMNGFQNRK------PRKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQG 116

Query: 150 SCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTT--SYGCDGGYMDYAFEWVINN 207
            CGSCW+FS TGA+EG     TG LISLSEQ LVDC     + GC+GG MDYAF++V +N
Sbjct: 117 QCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDN 176

Query: 208 GGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSALLCAAVQQPISVGMVGSA 267
           GG+D+E  YPY   + +C    + +           +   + +   A   PISV +    
Sbjct: 177 GGLDSEESYPYEATEESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGH 236

Query: 268 SDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSE----NGEDYWIVKNSWGTSWGIDGYF 323
             F  Y  GIY  +       +DH VL+VGYG E    +   YW+VKNSWG  WG+ GY 
Sbjct: 237 ESFLFYKEGIYF-EPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYV 295

Query: 324 YITRDTSLEYGKCAINAMASYPI 346
            + +D       C I + ASYP 
Sbjct: 296 KMAKDRR---NHCGIASAASYPT 315
>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} Length = 218 Back     information, alignment and structure
>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]} Length = 216 Back     information, alignment and structure
>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]} Length = 302 Back     information, alignment and structure
>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} Length = 214 Back     information, alignment and structure
>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]} Length = 224 Back     information, alignment and structure
>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]} Length = 215 Back     information, alignment and structure
>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]} Length = 216 Back     information, alignment and structure
>d2oula1 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falciparum [TaxId: 5833]} Length = 241 Back     information, alignment and structure
>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]} Length = 208 Back     information, alignment and structure
>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]} Length = 218 Back     information, alignment and structure
>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]} Length = 215 Back     information, alignment and structure
>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]} Length = 217 Back     information, alignment and structure
>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]} Length = 221 Back     information, alignment and structure
>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]} Length = 212 Back     information, alignment and structure
>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]} Length = 254 Back     information, alignment and structure
>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]} Length = 215 Back     information, alignment and structure
>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]} Length = 275 Back     information, alignment and structure
>d1fwoa_ g.3.16.1 (A:) Oryzain beta chain {Rice (Oryza sativa) [TaxId: 4530]} Length = 35 Back     information, alignment and structure
>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]} Length = 458 Back     information, alignment and structure
>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]} Length = 458 Back     information, alignment and structure
>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 453 Back     information, alignment and structure
>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 106 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query485
d1cs8a_316 (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 960 100.0
d1xkga1302 Major mite fecal allergen der p 1 {House-dust mite 100.0
d1ppoa_216 Caricain (protease omega) {Papaya (Carica papaya) 100.0
d1yala_218 Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} 100.0
d1cqda_216 Proline-specific cysteine protease {Ginger rhizome 100.0
d2oula1241 Falcipain 2 {Plasmodium falciparum [TaxId: 5833]} 100.0
d1s4va_224 Vignain (bean endopeptidase) {Castor bean (Ricinus 100.0
d1khqa_212 Papain {Papaya (Carica papaya) [TaxId: 3649]} 100.0
d2h7ja1217 (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 960 100.0
d1iwda_215 Ervatamin B {Adam's apple (Ervatamia coronaria) [T 100.0
d2r6na1215 (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 960 100.0
d1aeca_218 Actinidin {Chinese gooseberry or kiwifruit (Actini 100.0
g8pch.1228 Cathepsin H {Pig (Sus scrofa) [TaxId: 9823]} 100.0
d1o0ea_208 Ervatamin C {East indian rosebay (Ervatamia corona 100.0
d1m6da_214 Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1fh0a_221 (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 960 100.0
d1me4a_215 Cruzain {Trypanosoma cruzi [TaxId: 5693]} 100.0
g1k3b.1233 Cathepsin C (dipeptidyl peptidase I), catalytic do 100.0
d1deua_275 (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 960 100.0
d1gmya_254 (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 960 100.0
d3gcba_458 Bleomycin hydrolase {Baker's yeast (Saccharomyces 99.69
d2cb5a_453 Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 99.59
d1fwoa_35 Oryzain beta chain {Rice (Oryza sativa) [TaxId: 45 99.42
d1g26a_31 N-terminal domain of granulin-1 {Human (Homo sapie 99.15
d1i8ya_28 N-terminal domain of granulin-1 {Carp (Cyprinus ca 98.65
d1pxva_183 Staphopain SspB {Staphylococcus aureus [TaxId: 128 94.28
d1cv8a_173 Staphopain StpA {Staphylococcus aureus [TaxId: 128 88.41
>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8e-74  Score=577.70  Aligned_cols=300  Identities=40%  Similarity=0.793  Sum_probs=257.0

Q ss_pred             hHHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHhcC----CCCCeEEecccCCCCCHHHHHHHHhhcccccc
Q 043774           35 EERVFELFQRWKDKHGKAYKHTEEAERRFRNFKNNLEYVVEKKN----NPGGHVVGLNKFADMSNEEFREIYLKKIQKPI  110 (485)
Q Consensus        35 ~~~~~~~F~~f~~~~~k~Y~~~~E~~~R~~iF~~Nl~~I~~~N~----~~~s~~~g~N~FsDlt~eEf~~~~~~~~~~~~  110 (485)
                      +..++.+|++|+++|+|+|.+ +|+.+|++||++|+++|++||+    ++.+|++|+|+|+|||.|||.++++.......
T Consensus         5 ~~~l~~~F~~f~~~~~K~Y~~-~ee~~R~~iF~~N~~~I~~~N~~~~~~~~~~~~g~N~fsDlt~eEf~~~~~~~~~~~~   83 (316)
T d1cs8a_           5 DHSLEAQWTKWKAMHNRLYGM-NEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKP   83 (316)
T ss_dssp             CGGGHHHHHHHHHHTTCCCCT-THHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCCTTTTCCHHHHHHHHCCBCCCCC
T ss_pred             cHHHHHHHHHHHHHhCCcCCC-HHHHHHHHHHHHHHHHHHHHHhHhhcCCCceEEeceeccccCcHHHHhhhcccccccc
Confidence            456678899999999999977 5778999999999999999997    57799999999999999999999876543222


Q ss_pred             ccccCCccccccccccCCCCCCceeccCCCCCCcccCCCCCcchHHHHHHHHHHHHHHHHhCCCcccChhHhhhccC--C
Q 043774          111 GKAIGNAKSNLHKTVQSCEAPSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDT--T  188 (485)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~lP~s~DwR~~g~vtpVkdQg~CGsCwAfA~~~~lE~~~~i~~~~~~~LS~Q~l~dC~~--~  188 (485)
                      ...      .........+||++||||++|+|+||||||.||||||||+++++|++++++++..+.||+|+|+||+.  .
T Consensus        84 ~~~------~~~~~~~~~~lP~s~Dwr~~g~vtpVkdQG~CGsCwAfa~~~~~E~~~~i~~~~~~~lS~Q~lvdC~~~~~  157 (316)
T d1cs8a_          84 RKG------KVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG  157 (316)
T ss_dssp             SCC------EECCCCTTCCCCSCEEGGGGTCCCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCGGGT
T ss_pred             ccC------ccccCcccccCCCceECCcCCcccccccCCCCceeeehhhhHHHHHHHHhhcCCcccchhhhhhhcccccc
Confidence            111      01111224589999999999999999999999999999999999999999999999999999999986  5


Q ss_pred             CCCCCCCchHHHHHHHHHcCCcCCCCccccCCCCCCccCCccCcceEEecceeecCCCHHHHHHHHHc-CCeEEEEeccC
Q 043774          189 SYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSALLCAAVQ-QPISVGMVGSA  267 (485)
Q Consensus       189 ~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~l~~al~~-gPV~v~i~~~~  267 (485)
                      +.||+||++..|++|+..++++.+|..|||.+....|.... ......+..+.....+++.|+++|.. |||+|++++..
T Consensus       158 ~~~c~gg~~~~a~~y~~~~g~~~~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~gpv~v~i~~~~  236 (316)
T d1cs8a_         158 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNP-KYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGH  236 (316)
T ss_dssp             CCGGGCBCHHHHHHHHHHHTCEEBTTTSCCCSSCCCCCCCG-GGEEECCCCEEECCSCHHHHHHHHHHHCCEEEEECCCS
T ss_pred             CCCCCCCchHHHHHHHHhcCccccccccccccccccccccc-ccccccccccccccCcHHHHHHHHHHhCCeEEEEEecc
Confidence            78999999999999999998889999999999888886543 33445666677777888889988875 99999999987


Q ss_pred             ccccccCCCeeeC-CCCCCCCccCeEEEEEEeeec----CCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCceeeeeee
Q 043774          268 SDFQLYTSGIYNG-DCSNDPYYIDHAVLIVGYGSE----NGEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMA  342 (485)
Q Consensus       268 ~~f~~Y~sGIy~~-~c~~~~~~~~HaV~iVGyg~~----~g~~yWivkNSWG~~WGe~GY~ri~r~~~~~~~~CgI~~~~  342 (485)
                      .+|++|++|||.. .|+.  ..++|||+|||||++    +|++|||||||||++|||+|||||+|+.   .|.|||++.+
T Consensus       237 ~~f~~y~~Gi~~~~~c~~--~~~nHaV~iVGyG~d~~~~~g~~YWIikNSWG~~WGe~GY~ri~r~~---~n~CGI~~~~  311 (316)
T d1cs8a_         237 ESFLFYKEGIYFEPDCSS--EDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR---RNHCGIASAA  311 (316)
T ss_dssp             HHHHTEEEEEECCTTCCS--SCCCEEEEEEEEEEECCSSCCEEEEEEECSBCTTSTBTTEEEEECSS---SSGGGTTTSC
T ss_pred             chhccccCCcccCCCCCC--CcCCEEEEEEEEcccccCCCCCeEEEEEeCCCCCcccCCEEEEeeCC---CCcCccCCee
Confidence            8899999999975 4654  367999999999954    6899999999999999999999999985   3799999999


Q ss_pred             ceeee
Q 043774          343 SYPIK  347 (485)
Q Consensus       343 ~yp~~  347 (485)
                      +||++
T Consensus       312 ~yP~v  316 (316)
T d1cs8a_         312 SYPTV  316 (316)
T ss_dssp             EEECC
T ss_pred             eeeeC
Confidence            99974
>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]} Back     information, alignment and structure
>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]} Back     information, alignment and structure
>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} Back     information, alignment and structure
>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]} Back     information, alignment and structure
>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]} Back     information, alignment and structure
>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]} Back     information, alignment and structure
>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]} Back     information, alignment and structure
>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]} Back     information, alignment and structure
>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]} Back     information, alignment and structure
>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]} Back     information, alignment and structure
>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fwoa_ g.3.16.1 (A:) Oryzain beta chain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1g26a_ g.3.16.1 (A:) N-terminal domain of granulin-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1i8ya_ g.3.16.1 (A:) N-terminal domain of granulin-1 {Carp (Cyprinus carpio) [TaxId: 7962]} Back     information, alignment and structure
>d1pxva_ d.3.1.1 (A:) Staphopain SspB {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1cv8a_ d.3.1.1 (A:) Staphopain StpA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure