Citrus Sinensis ID: 043775

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550----
MVQRRLIEFDEGWEYIQKGIGKLKRILEGLREPPFSSEEYMALHITIYNMCSQNTPNNNSASCKRRNIPGFDEFGLACFRDLVYDALKHKAKDAVIDEREREQVDRALLANVLDIFVEHMLQDTSSYYSRISTNWILKDPCPDYMRKAEECLKKERDRVSRYLQSNGEEKLVEKVQHELLVVYATQLLEKEQSGCGALFRGNKVDDLSRMYRFYRTIRAGPHDNYMEYVTNCFMDHSLFQRALKEAFKIFCNKTVGGFSSSEQLATFCDNILKKSGNEKLSDEAIEETLEKVVKVLVYISDKDLFAEFYRKKLARRLLFDRSRTLARKNQTGFEKYLRYNKNAHAGIDLSVTVLATGFWPSYKSSDLNPIFNLPSQMIKCVEVFKRFYETKTKHRKLSWIYSLGQCHINAKFELKNIELIISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEPDTKSISRSDYFELNSKFTDRMRGSRSLSHHRKVLGHQQLVSECIELLGRMFKPAVKAFKKRIEGLISQDYLERYPENPNTF
cccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHEEccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEccccEEEEEEEEccccEEEEEcHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHccccEEEcccccccccccccEEEEccccccccccccccHHccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccc
cccccEEEHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEEccccEEEEEEcccccEEEEEHHHHHHHHHHHcccccccHHHHHHHccccHHHHHHHHHHHHHccHEEEEccccccccccccEEEEccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccc
MVQRRLIEFDEGWEYIQKGIGKLKRILeglreppfsseEYMALHITIYNMcsqntpnnnsasckrrnipgfdefgLACFRDLVYDALKHKAKDAVIDEREREQVDRALLANVLDIFVEHMLQdtssyysristnwilkdpcpdyMRKAEECLKKERDRVSRYLQSNGEEKLVEKVQHELLVVYATQLLEKeqsgcgalfrgnkvddlSRMYRFYRtiragphdnymEYVTNCFMDHSLFQRALKEAFKIFCNktvggfssseQLATFCDNILKksgneklsDEAIEETLEKVVKVLVYISDKDLFAEFYRKKLARRLLFDRSRTLARKNQTGFEKYLRYNknahagidLSVTVLATgfwpsykssdlnpifnlpsqMIKCVEVFKRFYEtktkhrklswIYSLGQCHINAKFELKNIELIISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILikepdtksisrsdyfelnskftdrmrgsrslshhrkVLGHQQLVSECIELLGRMFKPAVKAFKKRIEGLISQDylerypenpntf
mvqrrliefdegweyiQKGIGKLKRILEGLREPPFSSEEYMALHITIYNMCSQNTPNNNSASCKRRNIPGFDEFGLACFRDLVYDALKHKakdavidererEQVDRALLANVLDIFVEHMLQDTssyysristnwilkdpcpDYMRKAEECLKKERDRVSRYLQSNGEEKLVEKVQHELLVVYATQLLekeqsgcgalfrgnkvddlsRMYRFYRTIRAGPHDNYMEYVTNCFMDHSLFQRALKEAFKIFCNKTVGGFSSSEQLATFCDNILKKSGNEKLSDEAIEETLEKVVKVLVYISDKDLFAEFYRKKLArrllfdrsrtlarknqtgfEKYLRYNKNAHAGIDLSVTVLATGFWPSYKSSDLNPIFNLPSQMIKCVEVFKRFYETKTKHRKLSWIYSLGQCHINAKFELKNIELIISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILikepdtksisrsdYFELNSKFTDRMRGSRSLSHHRKVLGHQQLVSECIELLGRMFKPAVKAFKKRIEGlisqdylerypenpntf
MVQRRLIEFDEGWEYIQKGIGKLKRILEGLREPPFSSEEYMALHITIYNMCSQNTPNNNSASCKRRNIPGFDEFGLACFRDLVYDALKHKAKDAVIDEREREQVDRALLANVLDIFVEHMLQDTSSYYSRISTNWILKDPCPDYMRKAEECLKKERDRVSRYLQSNGEEKLVEKVQHELLVVYATQLLEKEQSGCGALFRGNKVDDLSRMYRFYRTIRAGPHDNYMEYVTNCFMDHSLFQRALKEAFKIFCNKTVGGFSSSEQLATFCDNILKKSGNEKLSDEAIeetlekvvkvlvYISDKDLFAEFYRKKLARRLLFDRSRTLARKNQTGFEKYLRYNKNAHAGIDLSVTVLATGFWPSYKSSDLNPIFNLPSQMIKCVEVFKRFYETKTKHRKLSWIYSLGQCHINAKFELKNIELIISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEPDTKSISRSDYFELNSKFTDRMRGSRSLSHHRKVLGHQQLVSECIELLGRMFKPAVKAFKKRIEGLISQDYLERYPENPNTF
*****LIEFDEGWEYIQKGIGKLKRILEGLREPPFSSEEYMALHITIYNMCSQ*********CKRRNIPGFDEFGLACFRDLVYDALKHKAKDAVIDEREREQVDRALLANVLDIFVEHMLQDTSSYYSRISTNWILKDPCPDYMRKAEECL*****************KLVEKVQHELLVVYATQLLEKEQSGCGALFRGNKVDDLSRMYRFYRTIRAGPHDNYMEYVTNCFMDHSLFQRALKEAFKIFCNKTVGGFSSSEQLATFCDNILKK********EAIEETLEKVVKVLVYISDKDLFAEFYRKKLARRLLFDRSRTLARKNQTGFEKYLRYNKNAHAGIDLSVTVLATGFWPSYKSSDLNPIFNLPSQMIKCVEVFKRFYETKTKHRKLSWIYSLGQCHINAKFELKNIELIISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP*********YF*******************RKVLGHQQLVSECIELLGRMFKPAVKAFKKRIEGLISQDYL**********
****RLI*FDEGWEYIQKGIGKLKRILEGLREPPFSSEEYMALHITIYNMCSQNTPNNNSASCKRRNIPGFDEFGLACFRDLVYDALKHKAKDAVIDEREREQVDRALLANVLDIFVEHMLQDTSSYYSRISTNWILKDPCPDYMRKAEECLKKERDRVSRYLQSNGEEKLVEKVQHELLVVYATQLLEKEQSGCGALFRGNKVDDLSRMYRFYRTIRAGPHDNYMEYVTNCFMDHSLFQRALKEAFKIFCNKTVGGFSSSEQLATFCDNIL**************ETLEKVVKVLVYISDKDLFAEFYRKKLARRLLFDR*************************IDLSVTVLATGFWPSYKSSDLNPIFNLPSQMIKCVEVFKRFYETKTKHRKLSWIYSLGQCHINAKFELKNIELIISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEPDTKSISRSDYFELNSKFTDRMR***********LGHQQLVSECIELLGRMFKPAVKAFKKRIEGLISQDYLERY*******
MVQRRLIEFDEGWEYIQKGIGKLKRILEGLREPPFSSEEYMALHITIYNMCSQNTPNNNSASCKRRNIPGFDEFGLACFRDLVYDALKHKAKDAVIDEREREQVDRALLANVLDIFVEHMLQDTSSYYSRISTNWILKDPCPDYMRKAEECLKKERDRVSRYLQSNGEEKLVEKVQHELLVVYATQLLEKEQSGCGALFRGNKVDDLSRMYRFYRTIRAGPHDNYMEYVTNCFMDHSLFQRALKEAFKIFCNKTVGGFSSSEQLATFCDNILKKSGNEKLSDEAIEETLEKVVKVLVYISDKDLFAEFYRKKLARRLLFDRSRTLARKNQTGFEKYLRYNKNAHAGIDLSVTVLATGFWPSYKSSDLNPIFNLPSQMIKCVEVFKRFYETKTKHRKLSWIYSLGQCHINAKFELKNIELIISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEPDTKSISRSDYFELNSKFTDRMRGSRSLSHHRKVLGHQQLVSECIELLGRMFKPAVKAFKKRIEGLISQDYLERYPENPNTF
***RRLIEFDEGWEYIQKGIGKLKRILEGLREPPFSSEEYMALHITIYNMCSQNTPNNNSASCKRRNIPGFDEFGLACFRDLVYDALKHKAKDAVIDEREREQVDRALLANVLDIFVEHMLQDTSSYYSRISTNWILKDPCPDYMRKAEECLKKERDRVSRYLQSNGEEKLVEKVQHELLVVYATQLLEKEQSGCGALFRGNKVDDLSRMYRFYRTIRAGPHDNYMEYVTNCFMDHSLFQRALKEAFKIFCNKTVGGFSSSEQLATFCDNILKKSGNEKLSDEAIEETLEKVVKVLVYISDKDLFAEFYRKKLARRLLFDRSRTLARKNQTGFEKYLRYNKNAHAGIDLSVTVLATGFWPSYKSSDLNPIFNLPSQMIKCVEVFKRFYETKTKHRKLSWIYSLGQCHINAKFELKNIELIISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEPDTKSISRSDYFELNSKFTDRMRGSRSLSHHRKVLGHQQLVSECIELLGRMFKPAVKAFKKRIEGLISQDYLERYPE*****
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MVQRRLIEFDEGWEYIQKGIGKLKRILEGLREPPFSSEEYMALHITIYNMCSQNTPNNNSASCKRRNIPGFDEFGLACFRDLVYDALKHKAKDAVIDEREREQVDRALLANVLDIFVEHMLQDTSSYYSRISTNWILKDPCPDYMRKAEECLKKERDRVSRYLQSNGEEKLVEKVQHELLVVYATQLLEKEQSGCGALFRGNKVDDLSRMYRFYRTIRAGPHDNYMEYVTNCFMDHSLFQRALKEAFKIFCNKTVGGFSSSEQLATFCDNILKKSGNEKLSDEAIEETLEKVVKVLVYISDKDLFAEFYRKKLARRLLFDRSRTLARKNQTGFEKYLRYNKNAHAGIDLSVTVLATGFWPSYKSSDLNPIFNLPSQMIKCVEVFKRFYETKTKHRKLSWIYSLGQCHINAKFELKNIELIISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEPDTKSISRSDYFELNSKFTDRMRGSRSLSHHRKVLGHQQLVSECIELLGRMFKPAVKAFKKRIEGLISQDYLERYPENPNTF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query554 2.2.26 [Sep-21-2011]
Q94AH6738 Cullin-1 OS=Arabidopsis t yes no 0.877 0.658 0.568 0.0
P0CH31721 Putative cullin-like prot no no 0.992 0.762 0.471 1e-164
Q9SRZ0742 Cullin-2 OS=Arabidopsis t no no 0.978 0.730 0.438 1e-157
Q54NZ5769 Cullin-3 OS=Dictyostelium yes no 0.857 0.617 0.274 2e-53
A2A432970 Cullin-4B OS=Mus musculus yes no 0.855 0.488 0.270 6e-52
Q13620913 Cullin-4B OS=Homo sapiens yes no 0.855 0.519 0.269 3e-51
Q13619759 Cullin-4A OS=Homo sapiens no no 0.857 0.625 0.275 1e-50
Q9XIE9374 Putative cullin-like prot no no 0.436 0.647 0.376 4e-49
Q3TCH7759 Cullin-4A OS=Mus musculus no no 0.772 0.563 0.268 2e-47
Q9ZVH4732 Cullin-3A OS=Arabidopsis no no 0.839 0.635 0.276 2e-46
>sp|Q94AH6|CUL1_ARATH Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1 Back     alignment and function desciption
 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/617 (56%), Positives = 407/617 (65%), Gaps = 131/617 (21%)

Query: 65  RRNIPGFDEFGLACFRDLVYDALKHKAKDAVI----DEREREQVDRALLANVLDIFVE-- 118
           RR++P  +E GL CFRDLVY+ L  K K AVI     ERE EQ+DRALL NVLDI+VE  
Sbjct: 122 RRSLPPLNEVGLTCFRDLVYNELHSKVKQAVIALVDKEREGEQIDRALLKNVLDIYVEIG 181

Query: 119 -------------HMLQDTSSYYSRISTNWILKDPCPDYMRKAEECLKKERDRVSRYLQS 165
                         MLQDTSSYYSR +++WI +D CPDYM K+EECLKKER+RV+ YL S
Sbjct: 182 MGQMERYEEDFESFMLQDTSSYYSRKASSWIQEDSCPDYMLKSEECLKKERERVAHYLHS 241

Query: 166 NGEEKLVEKVQHELLVVYATQLLEKEQSGCGALFRGNKVDDLSRMYRFYRTIRAG--P-- 221
           + E KLVEKVQHELLVV+A+QLLEKE SGC AL R +KVDDLSRMYR Y  I  G  P  
Sbjct: 242 SSEPKLVEKVQHELLVVFASQLLEKEHSGCRALLRDDKVDDLSRMYRLYHKILRGLEPVA 301

Query: 222 --------------------------------------------HDNYMEYVTNCFMDHS 237
                                                       HD YM YVT CF +H+
Sbjct: 302 NIFKQHVTAEGNALVQQAEDTATNQVANTASVQEQVLIRKVIELHDKYMVYVTECFQNHT 361

Query: 238 LFQRALKEAFKIFCNKTVGGFSSSEQLATFCDNILKKSGNEKLSDEAIEETLEKVVKVLV 297
           LF +ALKEAF+IFCNKTV G SS+E LATFCDNILKK G+EKLSDEAIE+TLEKVVK+L 
Sbjct: 362 LFHKALKEAFEIFCNKTVAGSSSAELLATFCDNILKKGGSEKLSDEAIEDTLEKVVKLLA 421

Query: 298 YISDKDLFAEFYRKKLARRLLFDRSR-------------------------------TLA 326
           YISDKDLFAEFYRKKLARRLLFDRS                                TLA
Sbjct: 422 YISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLA 481

Query: 327 RKNQTGFEKYLRYNKNAHAGIDLSVTVLATGFWPSYKSSDLNPIFNLPSQMIKCVEVFKR 386
           R+NQ  FE YL  N  A+ GIDL+VTVL TGFWPSYKS D+N    LPS+MIKCVEVFK 
Sbjct: 482 RENQNSFEDYLGSNPAANPGIDLTVTVLTTGFWPSYKSFDIN----LPSEMIKCVEVFKG 537

Query: 387 FYETKTKHRKLSWIYSLGQCHINAKFELKNIELIISTYHAAILDLFNASNRLSYSQVITQ 446
           FYETKTKHRKL+WIYSLG CHIN KF+ K IELI+STY AA+L LFN +++LSY++++ Q
Sbjct: 538 FYETKTKHRKLTWIYSLGTCHINGKFDQKAIELIVSTYQAAVLLLFNTTDKLSYTEILAQ 597

Query: 447 LNLTHDDLVRLLHSLSILYYKILIKEPDTKSISRSDYFELNSKFTDRMRGSR-------- 498
           LNL+H+DLVRLLHSLS   YKIL+KEP+TK++S++D FE NSKFTDRMR  +        
Sbjct: 598 LNLSHEDLVRLLHSLSCAKYKILLKEPNTKTVSQNDAFEFNSKFTDRMRRIKIPLPPVDE 657

Query: 499 ---------------------SLSHHRKVLGHQQLVSECIELLGRMFKPAVKAFKKRIEG 537
                                 +   RKVLGHQQLVSEC+E L RMFKP +KA KKR+E 
Sbjct: 658 RKKVVEDVDKDRRYAIDAAIVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMED 717

Query: 538 LISQDYLERYPENPNTF 554
           LI++DYLER  ENPN F
Sbjct: 718 LITRDYLERDKENPNMF 734
Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Regulator of mitotic processes which plays a role during gametogenesis and embryogenesis. Together with SKP1, RBX1 and a F-box protein, it forms a SCF complex. The functional specificity of this complex depends of the type of F-box protein. SCF(UFO) is implicated in floral organ development. SCF(TIR1) is involved in auxin signaling pathway. SCF(COI1) regulates responses to jasmonates. SCF(EID1) and SCF(AFR) are implicated in phytochrome A light signaling. SCF(ADO1/ZTL), SCF(ADO2/LKP2), SCF(ADO3/FKF1) are related to the circadian clock. SCF(ORE9) seems to be involved in senescence. SCF(EBF1/EBF2) may regulate ethylene signaling.
Arabidopsis thaliana (taxid: 3702)
>sp|P0CH31|CLL1_ARATH Putative cullin-like protein 1 OS=Arabidopsis thaliana GN=At1g43140 PE=3 SV=1 Back     alignment and function description
>sp|Q9SRZ0|CUL2_ARATH Cullin-2 OS=Arabidopsis thaliana GN=CUL2 PE=1 SV=1 Back     alignment and function description
>sp|Q54NZ5|CUL3_DICDI Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1 Back     alignment and function description
>sp|A2A432|CUL4B_MOUSE Cullin-4B OS=Mus musculus GN=Cul4b PE=1 SV=1 Back     alignment and function description
>sp|Q13620|CUL4B_HUMAN Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=4 Back     alignment and function description
>sp|Q13619|CUL4A_HUMAN Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3 Back     alignment and function description
>sp|Q9XIE9|CLL2_ARATH Putative cullin-like protein 2 OS=Arabidopsis thaliana GN=At1g59790 PE=3 SV=2 Back     alignment and function description
>sp|Q3TCH7|CUL4A_MOUSE Cullin-4A OS=Mus musculus GN=Cul4a PE=1 SV=1 Back     alignment and function description
>sp|Q9ZVH4|CUL3A_ARATH Cullin-3A OS=Arabidopsis thaliana GN=CUL3A PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query554
386688468 738 cullin 1-like protein A [Prunus avium] 0.990 0.743 0.508 0.0
356572654 736 PREDICTED: cullin-1-like [Glycine max] 0.990 0.745 0.508 0.0
356563946 709 PREDICTED: cullin-1-like isoform 2 [Glyc 0.992 0.775 0.517 0.0
356505534 728 PREDICTED: cullin-1-like [Glycine max] 0.990 0.754 0.512 0.0
357511189 728 Cullin-like protein1 [Medicago truncatul 0.990 0.754 0.517 0.0
356521883 717 PREDICTED: cullin-1-like isoform 3 [Glyc 0.992 0.767 0.511 0.0
255551707 744 Cullin-1, putative [Ricinus communis] gi 0.992 0.739 0.5 0.0
386688470 744 cullin 1-like protein B [Prunus avium] 0.992 0.739 0.495 0.0
224123204 744 predicted protein [Populus trichocarpa] 0.989 0.736 0.5 0.0
356556122 744 PREDICTED: cullin-1-like [Glycine max] 0.992 0.739 0.495 0.0
>gi|386688468|gb|AFJ21664.1| cullin 1-like protein A [Prunus avium] Back     alignment and taxonomy information
 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/738 (50%), Positives = 450/738 (60%), Gaps = 189/738 (25%)

Query: 2   VQRRLIEFDEGWEYIQKGIGKLKRILEGLREPPFSSEEYMALHITIYNMCSQNTPNNNSA 61
           ++R++IE D+GW+Y+QKGI KLK+ILEG+ EP F+SEEYM L+ TIYNMC+Q  PN+ S 
Sbjct: 1   MERKIIELDQGWDYMQKGITKLKKILEGIPEPQFNSEEYMMLYTTIYNMCTQKPPNDYSQ 60

Query: 62  SCKRRNIPGFDEFGLAC-------------FRDLVYDALKHK------------------ 90
               +    F+E+  +               R+LV     HK                  
Sbjct: 61  QLYDKYREAFEEYITSTVLPSLREKHDEFMLRELVKRWANHKVMVRWLSRFFHYLDRYFI 120

Query: 91  ---------------------------AKDAVID----EREREQVDRALLANVLDIFVE- 118
                                      A+ AVI     ERE EQ+DRALL NV+DIFVE 
Sbjct: 121 ARRSLPALNEVGLTCFRDLVYREVNANARVAVIGLIDKEREGEQIDRALLKNVIDIFVEI 180

Query: 119 --------------HMLQDTSSYYSRISTNWILKDPCPDYMRKAEECLKKERDRVSRYLQ 164
                         +ML D+  YYSR ++NWIL+D CPDYM KAEECLK+E++RVS YL 
Sbjct: 181 GMGNMDAYEGDFEAYMLGDSGEYYSRKASNWILEDSCPDYMLKAEECLKREKERVSHYLH 240

Query: 165 SNGEEKLVEKVQHELLVVYATQLLEKEQSGCGALFRGNKVDDLSRMYRFYRTIRAG--P- 221
           S+ E+KLVEKVQHELLVVYATQLL+KE SGC AL R +KV+DLSR+YR Y  I  G  P 
Sbjct: 241 SSSEQKLVEKVQHELLVVYATQLLDKEHSGCRALLRDDKVEDLSRIYRLYNKIPKGLEPV 300

Query: 222 ---------------------------------------------HDNYMEYVTNCFMDH 236
                                                        HD YM YVT+CF++H
Sbjct: 301 SSVFKQHVTAEGTALVQQAEDVASNQASSGAGTQEQVLVRKIIELHDKYMAYVTDCFLNH 360

Query: 237 SLFQRALKEAFKIFCNKTVGGFSSSEQLATFCDNILKKSGNEKLSDEAIEETLEKVVKVL 296
           +LF +ALKEAF++FCNK V G SS+E LA FCDNILKK G+EKLSDEAIEETLEKVVK+L
Sbjct: 361 TLFHKALKEAFEVFCNKAVSGSSSAELLAGFCDNILKKGGSEKLSDEAIEETLEKVVKLL 420

Query: 297 VYISDKDLFAEFYRKKLARRLLFDRSR-------------------------------TL 325
            YISDKDLFAEFYRKKLARRLLFDRS                                TL
Sbjct: 421 AYISDKDLFAEFYRKKLARRLLFDRSANEDHEKSILTKLKQQCGGQFTSKMEGMVTDLTL 480

Query: 326 ARKNQTGFEKYLRYNKNAHAGIDLSVTVLATGFWPSYKSSDLNPIFNLPSQMIKCVEVFK 385
           AR NQ  FE+YL    + + G+DL+VTVL TG+WPSYKS DL    NLP +M+KCVEVFK
Sbjct: 481 ARDNQANFEEYLHNYPDVNPGMDLTVTVLTTGYWPSYKSFDL----NLPEEMVKCVEVFK 536

Query: 386 RFYETKTKHRKLSWIYSLGQCHINAKFELKNIELIISTYHAAILDLFNASNRLSYSQVIT 445
            FYETKTKHRKL+WIYSLG C++N KFE KNIEL++STY AA+L LFN +++LSYS+++T
Sbjct: 537 GFYETKTKHRKLTWIYSLGTCNVNGKFEPKNIELVVSTYQAALLLLFNTADKLSYSEILT 596

Query: 446 QLNLTHDDLVRLLHSLSILYYKILIKEPDTKSISRSDYFELNSKFTDRMRGSR------- 498
           QLNLTHDDLVRLLHSLS   YKIL+KEP+TK+IS +D FE NSKFTDRMR  +       
Sbjct: 597 QLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISPTDSFEFNSKFTDRMRRIKIPLPPVD 656

Query: 499 ----------------------SLSHHRKVLGHQQLVSECIELLGRMFKPAVKAFKKRIE 536
                                  +   RKVLGHQQLV EC+E LGRMFKP +KA KKRIE
Sbjct: 657 ERKKVIEDVDKDRRYAIDAAIVRIMKSRKVLGHQQLVMECVEQLGRMFKPDIKAIKKRIE 716

Query: 537 GLISQDYLERYPENPNTF 554
            LI++DYLER  ENPN F
Sbjct: 717 DLITRDYLERDKENPNMF 734

Source: Prunus avium

Species: Prunus avium

Genus: Prunus

Family: Rosaceae

Order: Rosales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356572654|ref|XP_003554482.1| PREDICTED: cullin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|356563946|ref|XP_003550218.1| PREDICTED: cullin-1-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356505534|ref|XP_003521545.1| PREDICTED: cullin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|357511189|ref|XP_003625883.1| Cullin-like protein1 [Medicago truncatula] gi|355500898|gb|AES82101.1| Cullin-like protein1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356521883|ref|XP_003529580.1| PREDICTED: cullin-1-like isoform 3 [Glycine max] Back     alignment and taxonomy information
>gi|255551707|ref|XP_002516899.1| Cullin-1, putative [Ricinus communis] gi|223543987|gb|EEF45513.1| Cullin-1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|386688470|gb|AFJ21665.1| cullin 1-like protein B [Prunus avium] Back     alignment and taxonomy information
>gi|224123204|ref|XP_002330364.1| predicted protein [Populus trichocarpa] gi|222871568|gb|EEF08699.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356556122|ref|XP_003546376.1| PREDICTED: cullin-1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query554
TAIR|locus:2132377738 CUL1 "cullin 1" [Arabidopsis t 0.303 0.227 0.697 5.2e-146
TAIR|locus:2018645721 AT1G43140 [Arabidopsis thalian 0.492 0.378 0.622 5e-142
TAIR|locus:2024755742 CUL2 "cullin 2" [Arabidopsis t 0.342 0.256 0.543 1.5e-117
RGD|1564494754 Cul4b "cullin 4B" [Rattus norv 0.478 0.351 0.313 6e-53
DICTYBASE|DDB_G0284903769 culC "cullin C" [Dictyostelium 0.310 0.223 0.342 2e-47
MGI|MGI:1919834970 Cul4b "cullin 4B" [Mus musculu 0.283 0.161 0.320 4.2e-47
TAIR|locus:2025881374 AT1G59790 [Arabidopsis thalian 0.240 0.355 0.516 8e-47
UNIPROTKB|K4DI93900 CUL4B "Cullin 4B, isoform CRA_ 0.283 0.174 0.320 1.2e-46
UNIPROTKB|Q13620913 CUL4B "Cullin-4B" [Homo sapien 0.283 0.171 0.320 1.4e-46
UNIPROTKB|E1BQK9884 CUL4B "Uncharacterized protein 0.281 0.176 0.310 2e-46
TAIR|locus:2132377 CUL1 "cullin 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 628 (226.1 bits), Expect = 5.2e-146, Sum P(4) = 5.2e-146
 Identities = 120/172 (69%), Positives = 144/172 (83%)

Query:   324 TLARKNQTGFEKYLRYNKNAHAGIDLSVTVLATGFWPSYKSSDLNPIFNLPSQMIKCVEV 383
             TLAR+NQ  FE YL  N  A+ GIDL+VTVL TGFWPSYKS D+N    LPS+MIKCVEV
Sbjct:   479 TLARENQNSFEDYLGSNPAANPGIDLTVTVLTTGFWPSYKSFDIN----LPSEMIKCVEV 534

Query:   384 FKRFYETKTKHRKLSWIYSLGQCHINAKFELKNIELIISTYHAAILDLFNASNRLSYSQV 443
             FK FYETKTKHRKL+WIYSLG CHIN KF+ K IELI+STY AA+L LFN +++LSY+++
Sbjct:   535 FKGFYETKTKHRKLTWIYSLGTCHINGKFDQKAIELIVSTYQAAVLLLFNTTDKLSYTEI 594

Query:   444 ITQLNLTHDDLVRLLHSLSILYYKILIKEPDTKSISRSDYFELNSKFTDRMR 495
             + QLNL+H+DLVRLLHSLS   YKIL+KEP+TK++S++D FE NSKFTDRMR
Sbjct:   595 LAQLNLSHEDLVRLLHSLSCAKYKILLKEPNTKTVSQNDAFEFNSKFTDRMR 646
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0031625 "ubiquitin protein ligase binding" evidence=IEA
GO:0000151 "ubiquitin ligase complex" evidence=IPI
GO:0009733 "response to auxin stimulus" evidence=IMP
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP
GO:0005819 "spindle" evidence=IDA
GO:0009524 "phragmoplast" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0000794 "condensed nuclear chromosome" evidence=IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0009753 "response to jasmonic acid stimulus" evidence=IMP
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=TAS
GO:0010265 "SCF complex assembly" evidence=IPI
GO:0042752 "regulation of circadian rhythm" evidence=RCA;IMP
GO:0005829 "cytosol" evidence=IDA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0006396 "RNA processing" evidence=RCA
GO:0006486 "protein glycosylation" evidence=RCA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
GO:0007062 "sister chromatid cohesion" evidence=RCA
GO:0009790 "embryo development" evidence=RCA
GO:0009880 "embryonic pattern specification" evidence=RCA
GO:0010072 "primary shoot apical meristem specification" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010431 "seed maturation" evidence=RCA
GO:0010564 "regulation of cell cycle process" evidence=RCA
GO:0043090 "amino acid import" evidence=RCA
GO:0045595 "regulation of cell differentiation" evidence=RCA
GO:0048316 "seed development" evidence=RCA
GO:0048366 "leaf development" evidence=IMP;RCA
GO:0048825 "cotyledon development" evidence=RCA
GO:0051301 "cell division" evidence=RCA
GO:0010087 "phloem or xylem histogenesis" evidence=IMP
TAIR|locus:2018645 AT1G43140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024755 CUL2 "cullin 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
RGD|1564494 Cul4b "cullin 4B" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0284903 culC "cullin C" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
MGI|MGI:1919834 Cul4b "cullin 4B" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
TAIR|locus:2025881 AT1G59790 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|K4DI93 CUL4B "Cullin 4B, isoform CRA_e" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q13620 CUL4B "Cullin-4B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BQK9 CUL4B "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94AH6CUL1_ARATHNo assigned EC number0.56880.87720.6585yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_1320038
hypothetical protein (744 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query554
pfam00888603 pfam00888, Cullin, Cullin family 1e-100
COG5647773 COG5647, COG5647, Cullin, a subunit of E3 ubiquiti 4e-41
smart00182143 smart00182, CULLIN, Cullin 9e-31
pfam1055768 pfam10557, Cullin_Nedd8, Cullin protein neddylatio 3e-13
smart0088468 smart00884, Cullin_Nedd8, Cullin protein neddylati 5e-13
pfam03450103 pfam03450, CO_deh_flav_C, CO dehydrogenase flavopr 0.002
>gnl|CDD|216175 pfam00888, Cullin, Cullin family Back     alignment and domain information 
 Score =  314 bits (805), Expect = e-100
 Identities = 173/569 (30%), Positives = 266/569 (46%), Gaps = 102/569 (17%)

Query: 14  EYIQKGIGKLKRILEGLREPPFSSEEYM--ALHITIYNMCSQNTPNNNSASCKRRNIPGF 71
           EY+++ +  L + +    +       Y       T   + +      N    KR+N+ G 
Sbjct: 46  EYLEEYVAALLKSILENDDEVLLKTYYKEWNKFSTSMKILNNIFMYLNRYYVKRKNLDGV 105

Query: 72  DEFGLACFRDLVYDALKHKAKDAVID----EREREQVDRALLANVLDIFVE--------- 118
            E GL  +R+ ++D +K K  DA++     ER  E +DR+L+ NVLD+FVE         
Sbjct: 106 YELGLDIWRESLFDPIKDKLIDALLRLIEKERLGEIIDRSLIKNVLDMFVELGLDKLEVY 165

Query: 119 ------HMLQDTSSYYSRISTNWILKDPCPDYMRKAEECLKKERDRVSRYLQSNGEEKLV 172
                   L+ TS +Y + S+ ++ ++   +YM+K EE L++E +RV  YL S+ E+KL+
Sbjct: 166 KEDFEKPFLEATSEFYKKESSKFLQENSVSEYMKKVEERLEEEEERVRLYLHSSTEKKLI 225

Query: 173 EKVQHELLVVYATQLLEKEQSGCGALFRGNKVDDLSRMYRFYRTIRAG------------ 220
           E  +  L+  +   L     S    L    K++DL RMYR    +  G            
Sbjct: 226 EVCEKVLIEKHLEFLH----SEFQRLLDNEKIEDLRRMYRLLSRVPNGLEPLRKYFEKHI 281

Query: 221 --------------------------PHDNYMEYVTNCFMDHSLFQRALKEAFKIFCNKT 254
                                      HD Y   V   F + +LF  AL +AF+ F N  
Sbjct: 282 KKEGLAAVSDLAVETDPKDYVQTLLELHDKYDSLVNEAFNNDALFLNALDKAFEEFINS- 340

Query: 255 VGGFSSSEQLATFCDNILKKSGNEKLSDEAIEETLEKVVKVLVYISDKDLFAEFYRKKLA 314
                S+E LA +CD++LKK   + L++E +EE L+K++ +  YI DKD+F +FYRK LA
Sbjct: 341 -NSSKSAELLAKYCDSLLKK-SLKGLNEEELEEKLDKIIVLFKYIEDKDVFEKFYRKMLA 398

Query: 315 RRLLFDRSR-------------------------------TLARKNQTGFEKYLRYNKNA 343
           +RLL   S                                +L+++    F+ +L  N + 
Sbjct: 399 KRLLNGTSASDDAEKKMIEKLKQECGYQFTSKLERMFKDISLSKELNNSFKNHLENNLDL 458

Query: 344 H-AGIDLSVTVLATGFWPSYKSSDLNPIFNLPSQMIKCVEVFKRFYETKTKHRKLSWIYS 402
              GIDLSV VL+TGFWP+  +      F+LP ++ K +E F+ FY  K   RKL+W++S
Sbjct: 459 LSEGIDLSVLVLSTGFWPTLPTEP----FSLPEELEKALEKFEEFYSKKHSGRKLTWLHS 514

Query: 403 LGQCHINAKFELKNIELIISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLS 462
           LG+  + A+F  K  EL +STY  A+L LFN    L+  ++     L+ D L R L SL 
Sbjct: 515 LGRGELKAEFNDKTYELTVSTYQMAVLLLFNDQEELTVEELSEATGLSDDLLRRTLQSLL 574

Query: 463 ILYYKILIKEPDTKSISRSDYFELNSKFT 491
                +L K P  +  S +  F LNS FT
Sbjct: 575 KAKVLLLTKIPKGEEFSPNTVFSLNSDFT 603

Length = 603
>gnl|CDD|227934 COG5647, COG5647, Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|214545 smart00182, CULLIN, Cullin Back     alignment and domain information
>gnl|CDD|204512 pfam10557, Cullin_Nedd8, Cullin protein neddylation domain Back     alignment and domain information
>gnl|CDD|214883 smart00884, Cullin_Nedd8, Cullin protein neddylation domain Back     alignment and domain information
>gnl|CDD|217566 pfam03450, CO_deh_flav_C, CO dehydrogenase flavoprotein C-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 554
KOG2166725 consensus Cullins [Cell cycle control, cell divisi 100.0
COG5647773 Cullin, a subunit of E3 ubiquitin ligase [Posttran 100.0
KOG2167661 consensus Cullins [Cell cycle control, cell divisi 100.0
KOG2284728 consensus E3 ubiquitin ligase, Cullin 2 component 100.0
KOG2285777 consensus E3 ubiquitin ligase, Cullin 1 component 100.0
PF00888588 Cullin: Cullin family; InterPro: IPR001373 Cullins 100.0
smart00182142 CULLIN Cullin. 99.91
KOG2165765 consensus Anaphase-promoting complex (APC), subuni 99.86
PF1055768 Cullin_Nedd8: Cullin protein neddylation domain; I 99.59
TIGR0161095 phage_O_Nterm phage replication protein O, N-termi 94.52
PF0933952 HTH_IclR: IclR helix-turn-helix domain; InterPro: 94.3
PF0208283 Rrf2: Transcriptional regulator; InterPro: IPR0009 93.73
PF1341248 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 93.49
PF1280262 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP 93.25
PF0822057 HTH_DeoR: DeoR-like helix-turn-helix domain; Inter 92.24
PF0104759 MarR: MarR family; InterPro: IPR000835 The MarR-ty 91.04
PF1346368 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL 90.78
PF1284061 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_ 90.77
TIGR02337118 HpaR homoprotocatechuate degradation operon regula 90.13
PF0102247 HTH_5: Bacterial regulatory protein, arsR family; 88.75
PRK11512144 DNA-binding transcriptional repressor MarR; Provis 88.5
smart0055068 Zalpha Z-DNA-binding domain in adenosine deaminase 88.21
smart0034691 HTH_ICLR helix_turn_helix isocitrate lyase regulat 86.43
TIGR01889109 Staph_reg_Sar staphylococcal accessory regulator f 85.45
smart00347101 HTH_MARR helix_turn_helix multiple antibiotic resi 85.15
smart0042053 HTH_DEOR helix_turn_helix, Deoxyribose operon repr 84.46
PF0827955 HTH_11: HTH domain; InterPro: IPR013196 Winged hel 84.45
PF04492100 Phage_rep_O: Bacteriophage replication protein O ; 84.13
PF0197868 TrmB: Sugar-specific transcriptional regulator Trm 83.7
PRK10857164 DNA-binding transcriptional regulator IscR; Provis 83.38
PF0470362 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A. 83.06
PRK11920153 rirA iron-responsive transcriptional regulator; Re 83.03
PF1360180 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9 82.89
PRK15090 257 DNA-binding transcriptional regulator KdgR; Provis 82.59
PRK13777185 transcriptional regulator Hpr; Provisional 81.6
PRK03573144 transcriptional regulator SlyA; Provisional 80.31
TIGR02010135 IscR iron-sulfur cluster assembly transcription fa 80.1
>KOG2166 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=8.5e-98  Score=814.95  Aligned_cols=539  Identities=55%  Similarity=0.920  Sum_probs=496.9

Q ss_pred             ccccCHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhhhcCCCCCCchh---------------------
Q 043775            4 RRLIEFDEGWEYIQKGIGKLKRILEGLREPPFSSEEYMALHITIYNMCSQNTPNNNSAS---------------------   62 (554)
Q Consensus         4 ~~~~~~e~~W~~l~~ai~~i~~~l~~~~~~~~s~~~y~~lY~~vY~~c~~~~~~~y~~~---------------------   62 (554)
                      +.+.+++.+|+.+++|++++.+..++-+...++..+|+.+|+++|++|+++++..+++.                     
T Consensus         5 ~~~~~~~~~w~~~~~~~~~l~~~~~~~s~~~~~~~~~~~ly~t~~~~~~~k~~~~~~~~lY~~l~~~~~~yl~~~~~~~~   84 (725)
T KOG2166|consen    5 PKEIDLEVGWSYIETGITKLKRIIEGLSEPAFEQYQFMYLYTTIYNMCLQKPPHDYSQQLYDKYREVIEEYLIQTVLPAL   84 (725)
T ss_pred             ccccchhccHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999988764444568888899999999999999988443211                     


Q ss_pred             -------------------------------------hccC-CCCcHHHHH-HHHHHHHHHH-HHHHHHHHHHHH----H
Q 043775           63 -------------------------------------CKRR-NIPGFDEFG-LACFRDLVYD-ALKHKAKDAVID----E   98 (554)
Q Consensus        63 -------------------------------------v~~~-~~~~i~~l~-l~~fr~~v~~-~i~~~l~~~ll~----e   98 (554)
                                                           |+++ +..++++++ |.+||..++. ++++++++++|.    +
T Consensus        85 ~~~~~~~~l~~~~~~W~~~~~~~~~~~~i~~YldR~~v~~~~~~~~v~~~~~l~l~r~~v~~~~~~~~~~~all~lI~~e  164 (725)
T KOG2166|consen   85 REKHDEYMLRELAKRWNNHKVLVRWLSDFFMYLDRYYVAQSRRKLPTLNEVGLTCFRDLVYKFEMQSEAIDALLALIHKE  164 (725)
T ss_pred             HhcCcHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCcccceeeEEeehHHHHHHHHHHHHHHHHHHHHhh
Confidence                                                 5544 666777777 8888888887 599999999999    9


Q ss_pred             hcCCccCHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHchhc
Q 043775           99 REREQVDRALLANVLDIFVE---------------HMLQDTSSYYSRISTNWILKDPCPDYMRKAEECLKKERDRVSRYL  163 (554)
Q Consensus        99 R~g~~id~~~lk~~i~m~~~---------------~fL~~t~~yY~~~s~~~i~~~~~~~Yl~~ve~~l~eE~~r~~~yL  163 (554)
                      |.|++||+..|+++++|+.+               +|+++|+.||..++.+|+...++++|+.+|+.++.+|.+|+..||
T Consensus       165 R~ge~in~~~i~~~~~~~~~lg~~~~s~Y~~~Fe~~fl~~t~~~y~~~~~~~l~~~~~~~yl~k~e~~l~~e~~r~~~yl  244 (725)
T KOG2166|consen  165 REGEQIDRELIRNVIDVYVELGMGELSFYEEDFERKFLQDTASYYSEEASEWLEENSCLDYLKKIEECLKEERERVTHYL  244 (725)
T ss_pred             cccccccHHHHhhHHHHHHhccccchhHHHHHhHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999874               999999999999999999988999999999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhhccCChHHHHHHHHHHhhhhhh-----------------------
Q 043775          164 QSNGEEKLVEKVQHELLVVYATQLLEKEQSGCGALFRGNKVDDLSRMYRFYRTIRAG-----------------------  220 (554)
Q Consensus       164 ~~~t~~kl~~~~~~~Li~~~~~~ll~~~~sg~~~ll~~~~~~~L~~ly~L~~~~~~~-----------------------  220 (554)
                      +..+.+++...++.+++..|.+.++++.++||..|+.+++.+||.+||+|+++++.|                       
T Consensus       245 ~~~~e~~~~~~le~~~~~~~~~~~~e~~~sgf~~~l~~~~~edl~~my~l~~r~~~gl~~l~~~~~~~~~~eg~~l~~r~  324 (725)
T KOG2166|consen  245 HSSTEPKLVEVVEDELIVVFADDLEEMEHSGFRALLNDDKLEDLSRMYRLFRRILPGLEPLASVFKQHVREEGNALVARP  324 (725)
T ss_pred             hhcccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHhccchhHHHHHHHHhhcccccchhHHHHHHHHHHhhHHHHhhhh
Confidence            999999999999999999999999999999999999999999999999999999876                       


Q ss_pred             -----------------HHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHhhccCCCCCCHH
Q 043775          221 -----------------PHDNYMEYVTNCFMDHSLFQRALKEAFKIFCNKTVGGFSSSEQLATFCDNILKKSGNEKLSDE  283 (554)
Q Consensus       221 -----------------l~~~~~~l~~~~F~~~~~f~~~l~~af~~~iN~~~~~~~~~e~la~y~D~~lkk~~~~~~~~~  283 (554)
                                       ++++|..++..||++|..|.++++.||..|+|.+..  .+||+||+|||.+||++ .++.+++
T Consensus       325 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~~f~~d~~f~~~ld~a~~~fin~n~~--~~~E~la~y~D~~lkk~-~k~~~e~  401 (725)
T KOG2166|consen  325 AETAATNPVEYVQGLLELHDKYKVLVKECFANDTLFKKALDAAFEEFINKNVA--TSAELLATYCDDILKKG-SKKLSDE  401 (725)
T ss_pred             hhhcccchHHHHhccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHcccCC--CcHHHHHHHhHHHhccc-ccCCchh
Confidence                             799999999999999999999999999999999962  23699999999999995 4778899


Q ss_pred             HHHHHHHHHhhHhccccChHHHHHHHHHHHHHHhcCCCCh-------------------------------hhHHHHHHH
Q 043775          284 AIEETLEKVVKVLVYISDKDLFAEFYRKKLARRLLFDRSR-------------------------------TLARKNQTG  332 (554)
Q Consensus       284 e~~~~l~~i~~lf~~l~~KD~F~~~Y~~~LakRLL~~~s~-------------------------------~~s~dl~~~  332 (554)
                      +++..+++++.+|+|+.|||+|+.+|+++||||||+++|.                               .+|+|+++.
T Consensus       402 ~ie~~l~~v~~l~~yisdKdvF~~~Ykk~lakRLl~~~S~sdd~E~~mIsklk~~~g~~~T~kL~~Mf~D~~~s~~l~~~  481 (725)
T KOG2166|consen  402 AIEDTLEKVVKLLKYISDKDVFAEFYKKVLARRLLFDRSASDDHEKSLITKLKNLCGEQFTSKLEGMFTDLTLSRELQTA  481 (725)
T ss_pred             HHHhHhhcceeeeeeccHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHhHHHHHHHhhcccHHHHHHHHHH
Confidence            9999999999999999999999999999999999999996                               457889999


Q ss_pred             HHHHHhhccCCCCCCceeEEeeccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCceeEEeecCceEEEEEEE
Q 043775          333 FEKYLRYNKNAHAGIDLSVTVLATGFWPSYKSSDLNPIFNLPSQMIKCVEVFKRFYETKTKHRKLSWIYSLGQCHINAKF  412 (554)
Q Consensus       333 f~~~~~~~~~~~~~~~~~~~VLt~~~WP~~~~~~~~~~~~lP~~l~~~~~~F~~fY~~k~~~RkL~W~~~lg~~~l~~~~  412 (554)
                      |+++ . ......+++|.|.|||+|+||.+++.++    .||++|..+++.|..||.++|+||+|+|+|++|.|+|.++|
T Consensus       482 F~~~-~-~~~~~~~~df~v~VLt~g~WP~~~~~~~----~LP~el~~~~e~F~~~Y~~kh~gR~L~w~~~l~~~ei~~~~  555 (725)
T KOG2166|consen  482 FADY-A-NYSANLGIDFTVTVLTTGFWPSYKSTDI----NLPSEMSDCVEMFKGFYATKHNGRRLTWIYSLGTGEINGKF  555 (725)
T ss_pred             HHhh-h-chhccCCCceeEEEeecCCcCCccCCCC----CCChhHHHHHHHHHHHHhhccCCCeeeeeeccCceEEEEEe
Confidence            9887 2 2223457999999999999999877666    99999999999999999999999999999999999999999


Q ss_pred             cCceEEEEecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccceeeeecCCCCCCCCCCeEEEcccCCC
Q 043775          413 ELKNIELIISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEPDTKSISRSDYFELNSKFTD  492 (554)
Q Consensus       413 ~~~~~~l~vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~~~~~d~f~~N~~F~~  492 (554)
                      .+++|+|+|||+||||||+||+.+.+|+++|.++|+++.+++.++|+||++.|.+++.+ |.++. +|++.|.+|.+|++
T Consensus       556 ~~~~~~l~vst~Qm~VLlLFN~~d~lt~~eI~~~t~i~~~~l~~~L~Sl~~~K~~v~~~-~~s~~-~~~~~~~~N~~f~s  633 (725)
T KOG2166|consen  556 DKKTVELQVSTYQMAVLLLFNNTEKLTYEEILEQTNLGHEDLARLLQSLSCLKYKILLK-PMSRT-SPNDEFAFNSKFTS  633 (725)
T ss_pred             cCceEEEEEEhHHHHHHHHccchhhccHHHHHHHhCCCHHHHHHHHHHHHHHhHhhccC-ccccC-CCCcEEEeeccccC
Confidence            99999999999999999999999999999999999999999999999999989777766 77777 89999999999999


Q ss_pred             cccccc-----------------------------ccccccccCChHHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcc
Q 043775          493 RMRGSR-----------------------------SLSHHRKVLGHQQLVSECIELLGRMFKPAVKAFKKRIEGLISQDY  543 (554)
Q Consensus       493 ~~~ki~-----------------------------RiMK~~k~l~~~~L~~ev~~~l~~~F~~~~~~iK~~Ie~LIerey  543 (554)
                      +.+||+                             ||||+||.|.|++|+.||++|+++||.|+|.+||+|||.||||||
T Consensus       634 k~~Rv~i~~~~~~e~~~~~~~ve~dRk~~i~AaIVRIMK~rK~l~h~~Lv~Ev~~ql~~RF~p~v~~IKk~Ie~LIEkeY  713 (725)
T KOG2166|consen  634 KMRRVKIPLPPMDERKKVVEDVDKDRKYAIDAAIVRIMKSRKVLGHQQLVSEVVEQLSERFKPDIKMIKKRIEDLIEREY  713 (725)
T ss_pred             cceeeccCCCCchhHHHHHhhhhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHH
Confidence            999988                             999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCC
Q 043775          544 LERYPENPNTF  554 (554)
Q Consensus       544 l~Rd~~d~~~y  554 (554)
                      |+|| +|+++|
T Consensus       714 leR~-~~~~~Y  723 (725)
T KOG2166|consen  714 LERD-ENPNIY  723 (725)
T ss_pred             Hhcc-CCCCcc
Confidence            9999 899987

>COG5647 Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2167 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2284 consensus E3 ubiquitin ligase, Cullin 2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2285 consensus E3 ubiquitin ligase, Cullin 1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00888 Cullin: Cullin family; InterPro: IPR001373 Cullins are a family of hydrophobic proteins that act as scaffolds for ubiquitin ligases (E3) Back     alignment and domain information
>smart00182 CULLIN Cullin Back     alignment and domain information
>KOG2165 consensus Anaphase-promoting complex (APC), subunit 2 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10557 Cullin_Nedd8: Cullin protein neddylation domain; InterPro: IPR019559 This is the neddylation site of cullin proteins, which are a family of structurally related proteins containing an evolutionarily conserved cullin domain Back     alignment and domain information
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain Back     alignment and domain information
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities Back     alignment and domain information
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp Back     alignment and domain information
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A Back     alignment and domain information
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B Back     alignment and domain information
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism Back     alignment and domain information
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance Back     alignment and domain information
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A Back     alignment and domain information
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B Back     alignment and domain information
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR Back     alignment and domain information
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities Back     alignment and domain information
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional Back     alignment and domain information
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases Back     alignment and domain information
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation Back     alignment and domain information
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family Back     alignment and domain information
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein Back     alignment and domain information
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor Back     alignment and domain information
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets Back     alignment and domain information
>PF04492 Phage_rep_O: Bacteriophage replication protein O ; InterPro: IPR006497 This entry is represented by the N-terminal domain of Bacteriophage lambda, GpO Back     alignment and domain information
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis Back     alignment and domain information
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional Back     alignment and domain information
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A Back     alignment and domain information
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed Back     alignment and domain information
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A Back     alignment and domain information
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional Back     alignment and domain information
>PRK13777 transcriptional regulator Hpr; Provisional Back     alignment and domain information
>PRK03573 transcriptional regulator SlyA; Provisional Back     alignment and domain information
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query554
4a0c_C741 Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 3e-49
4a0l_E726 Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp 4e-49
4a0k_A742 Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp 2e-48
2hye_C759 Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Compl 2e-48
1ldj_A760 Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiqu 2e-34
1u6g_A776 Crystal Structure Of The Cand1-Cul1-Roc1 Complex Le 3e-34
1ldk_B366 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 8e-22
3rtr_A368 A Ring E3-Substrate Complex Poised For Ubiquitin-Li 3e-21
3dpl_C382 Structural Insights Into Nedd8 Activation Of Cullin 1e-17
3dqv_C382 Structural Insights Into Nedd8 Activation Of Cullin 5e-15
4f52_A282 Structure Of A Glomulin-Rbx1-Cul1 Complex Length = 1e-14
4a64_A354 Crystal Structure Of The N-Terminal Domain Of Human 9e-10
1ldk_A396 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 3e-09
4ap2_B410 Crystal Structure Of The Human Klhl11-cul3 Complex 3e-09
4apf_B388 Crystal Structure Of The Human Klhl11-cul3 Complex 3e-09
4eoz_B364 Crystal Structure Of The Spop Btb Domain Complexed 4e-08
2do7_A101 Solution Structure Of The Winged Helix-Turn-Helix M 1e-05
3tdu_C77 N-Terminal Acetylation Acts As An Avidity Enhancer 5e-05
1iuy_A92 Solution Structure Of The Cullin-3 Homologue Length 5e-04
>pdb|4A0C|C Chain C, Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 741 Back     alignment and structure 
Iteration: 1

 Score =  192 bits (489), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 159/602 (26%), Positives = 261/602 (43%), Gaps = 128/602 (21%)
Query: 68  IPGFDEFGLACFR-DLVYDA-LKHKAKDAVIDEREREQVDRALLANVL------------ 113
           +P   + GL  FR  ++ D  +++K  D ++   ERE+   A+  ++L            
Sbjct: 149 LPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAIDRSLLRSLLSMLSDLQI 208
Query: 114 --DIFVEHMLQDTSSYYSRISTNWILKDPCPDYMRKAEECLKKERDRVSRYLQSNGEEKL 171
             D F +  L++T+  Y+      + +   P+Y+    + L++E DR+  YL    ++ L
Sbjct: 209 YQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQKSL 268
Query: 172 VEKVQHELLVVYATQLLEKEQSGCGALFRGNKVDDLSRMYRFYRTIRAGPH---DNYMEY 228
           +  V+ +LL  + T +L+K   G   L   N++ DLS +Y+ +  +R G       ++EY
Sbjct: 269 IATVEKQLLGEHLTAILQK---GLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEY 325
Query: 229 VTN--------------------------------CFMDHSLFQRALKEAFKIFCNKTVG 256
           +                                  CF+ +  F  A+KEAF+ F NK   
Sbjct: 326 IKAFGSTIVINPEKDKTMVQELLDFKDKVDHIIDICFLKNEKFINAMKEAFETFINKRPN 385
Query: 257 GFSSSEQLATFCDNILKKSGNEKLSDEAIXXXXXXXXXXXXYISDKDLFAEFYRKKLARR 316
               +E +A + D+ L+ +GN++ +DE +            +I  KD+F  FY+K LA+R
Sbjct: 386 --KPAELIAKYVDSKLR-AGNKEATDEELEKMLDKIMIIFRFIYGKDVFEAFYKKDLAKR 442
Query: 317 LLFDRSRT-------------------------------LARKNQTGFEKYLRYNKNAHA 345
           LL  +S +                               L++     F++Y++ N+N   
Sbjct: 443 LLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMIQFKQYMQ-NQNVPG 501
Query: 346 GIDLSVTVLATGFWPSYKSSDLNPIFNLPSQMIKCVEVFKRFYETKTKHRKLSWIYSLGQ 405
            I+L+V +L  G+WP+Y   +++    LP +M+K  E+FK FY  K   RKL W  +LG 
Sbjct: 502 NIELTVNILTMGYWPTYVPMEVH----LPPEMVKLQEIFKTFYLGKHSGRKLQWQSTLGH 557
Query: 406 CHINAKFELKNIELIISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILY 465
           C + A+F+    EL +S +   +L +FN     S  ++     +   +L R L SL+   
Sbjct: 558 CVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFSLEEIKQATGIEDGELRRTLQSLACGK 617
Query: 466 YKILIKEPDTKSISRSDYFELNSKF------------------------TDRMRGSRS-- 499
            ++L K P  K I   D F  N  F                        T+R+   R   
Sbjct: 618 ARVLAKNPKGKDIEDGDKFICNDDFKHKLFRIKINQIQMKETVEEQASTTERVFQDRQYQ 677
Query: 500 -------LSHHRKVLGHQQLVSECIELLGRMFKPAVKAFKKRIEGLISQDYLERYPENPN 552
                  +   RK L H  LVSE    L    KPA    KKRIE LI +DY+ER  ENPN
Sbjct: 678 IDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKPA--DLKKRIESLIDRDYMERDKENPN 735
Query: 553 TF 554
            +
Sbjct: 736 QY 737
>pdb|4A0L|E Chain E, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 726 Back     alignment and structure
>pdb|4A0K|A Chain A, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 742 Back     alignment and structure
>pdb|2HYE|C Chain C, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex Length = 759 Back     alignment and structure
>pdb|1LDJ|A Chain A, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin Ligase Complex Length = 760 Back     alignment and structure
>pdb|1U6G|A Chain A, Crystal Structure Of The Cand1-Cul1-Roc1 Complex Length = 776 Back     alignment and structure
>pdb|1LDK|B Chain B, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 366 Back     alignment and structure
>pdb|3RTR|A Chain A, A Ring E3-Substrate Complex Poised For Ubiquitin-Like Protein Transfer: Structural Insights Into Cullin-Ring Ligases Length = 368 Back     alignment and structure
>pdb|3DPL|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 382 Back     alignment and structure
>pdb|3DQV|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 382 Back     alignment and structure
>pdb|4F52|A Chain A, Structure Of A Glomulin-Rbx1-Cul1 Complex Length = 282 Back     alignment and structure
>pdb|4A64|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Cul4b At 2.57a Resolution Length = 354 Back     alignment and structure
>pdb|1LDK|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 396 Back     alignment and structure
>pdb|4AP2|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a Resolution Length = 410 Back     alignment and structure
>pdb|4APF|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a Resolution Length = 388 Back     alignment and structure
>pdb|4EOZ|B Chain B, Crystal Structure Of The Spop Btb Domain Complexed With The Cul3 N- Terminal Domain Length = 364 Back     alignment and structure
>pdb|2DO7|A Chain A, Solution Structure Of The Winged Helix-Turn-Helix Motif Of Human Cul-4b Length = 101 Back     alignment and structure
>pdb|3TDU|C Chain C, N-Terminal Acetylation Acts As An Avidity Enhancer Within An Interconnected Multiprotein Complex: Structure Of A Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex Length = 77 Back     alignment and structure
>pdb|1IUY|A Chain A, Solution Structure Of The Cullin-3 Homologue Length = 92 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query554
1ldj_A760 Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc 2e-96
1ldj_A 760 Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc 4e-08
2hye_C759 Cullin-4A, CUL-4A; beta propeller, ring finger, zi 1e-93
3dpl_C382 Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus int 2e-63
4ap2_B410 Cullin-3, CUL-3; ubiquitination, E3 ligase, cell c 3e-29
2wzk_A391 Cullin-5, CUL-5; UBL conjugation pathway, HIV, pho 9e-28
2wzk_A391 Cullin-5, CUL-5; UBL conjugation pathway, HIV, pho 1e-05
4eoz_B364 Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, pro 1e-25
4a64_A354 Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo 3e-23
3tdu_C77 Cullin-1, CUL-1; E2:E3, ligase-protein binding com 3e-14
1iuy_A92 Cullin-3 homologue; winged helix, structural genom 3e-14
3o2p_E88 Cell division control protein 53; ligase, cell cyc 6e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
2do7_A101 Cullin-4B, CUL-4B; helix-turn-helix motif, structu 1e-11
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Length = 760 Back     alignment and structure
 Score =  309 bits (792), Expect = 2e-96
 Identities = 152/637 (23%), Positives = 247/637 (38%), Gaps = 152/637 (23%)

Query: 59  NSASCKRRNIPGFDEFGLACFRDLVYDALKHKAKDAVID----EREREQVDRALLANVLD 114
                 R+ I       L  +RD ++  L  +  +AV+     ER  E ++  L++ V+ 
Sbjct: 131 RECDEGRKGIYEIYSLALVTWRDCLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQ 190

Query: 115 IFVE------------------------HMLQDTSSYYSRISTNWILKDPCPDYMRKAEE 150
            +VE                          L DT  +Y+R ST ++ ++P  +YM+KAE 
Sbjct: 191 SYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEA 250

Query: 151 CLKKERDRVSRYLQSNGEEKLVEKVQHELLVVYATQLLEKEQSGCGALFRGNKVDDLSRM 210
            L +E+ RV  YL  + +++L  K +  L+  +    LE   +    L   +K +DL RM
Sbjct: 251 RLLEEQRRVQVYLHESTQDELARKCEQVLIEKH----LEIFHTEFQNLLDADKNEDLGRM 306

Query: 211 YRFYRTIRAGP----------------------------------------HDNYMEYVT 230
           Y     I+ G                                         H  Y   V 
Sbjct: 307 YNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVM 366

Query: 231 NCFMDHSLFQRALKEAFKIFCNKTV------GGFSSSEQLATFCDNILKKSGNEKLSDEA 284
           + F + + F  AL +A   F N             S E LA +CD++LKK  ++   +  
Sbjct: 367 SAFNNDAGFVAALDKACGRFINNNAVTKMAQSSSKSPELLARYCDSLLKK-SSKNPEEAE 425

Query: 285 IEETLEKVVKVLVYISDKDLFAEFYRKKLARRLLFDRSR--------------------- 323
           +E+TL +V+ V  YI DKD+F +FY K LA+RL+   S                      
Sbjct: 426 LEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISKLKQACGFEYT 485

Query: 324 ----------TLARKNQTGFEKYLRYNKNAHAGIDLSVTVLATGFWPSYKSSDLNPIFNL 373
                      +++     F+K+L  ++     +D S+ VL++G WP  +S      F L
Sbjct: 486 SKLQRMFQDIGVSKDLNEQFKKHLTNSEPL--DLDFSIQVLSSGSWPFQQSCT----FAL 539

Query: 374 PSQMIKCVEVFKRFYETKTKHRKLSWIYSLGQCHINAKFELKNIELIISTYHAAILDLFN 433
           PS++ +  + F  FY ++   RKL+W+Y L +  +          L  ST+  AIL  +N
Sbjct: 540 PSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYN 599

Query: 434 ASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKILIKEP---DTKSISRSDYFELNSKF 490
             +  +  Q+     +  D L ++L  L      +L  E    D   +      +L   +
Sbjct: 600 TEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVLEDENANVDEVELKPDTLIKLYLGY 659

Query: 491 TDRMR------------------------GSRSLS---------HHRKVLGHQQLVSECI 517
            ++                            R L            RKVL HQQL+ E +
Sbjct: 660 KNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVL 719

Query: 518 ELLGRMFKPAVKAFKKRIEGLISQDYLERYPENPNTF 554
             L   FKP V   KK I+ LI ++YLER     +T+
Sbjct: 720 TQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTY 756
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Length = 760 Back     alignment and structure
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* Length = 759 Back     alignment and structure
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C Length = 382 Back     alignment and structure
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens} PDB: 4apf_B Length = 410 Back     alignment and structure
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus} Length = 391 Back     alignment and structure
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus} Length = 391 Back     alignment and structure
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B Length = 364 Back     alignment and structure
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens} Length = 354 Back     alignment and structure
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C Length = 77 Back     alignment and structure
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34 Length = 92 Back     alignment and structure
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B Length = 88 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 101 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query554
1ldj_A760 Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc 100.0
2hye_C759 Cullin-4A, CUL-4A; beta propeller, ring finger, zi 100.0
3dpl_C382 Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus int 100.0
4ap2_B410 Cullin-3, CUL-3; ubiquitination, E3 ligase, cell c 100.0
4eoz_B364 Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, pro 100.0
4a64_A354 Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo 100.0
2wzk_A391 Cullin-5, CUL-5; UBL conjugation pathway, HIV, pho 100.0
3tdu_C77 Cullin-1, CUL-1; E2:E3, ligase-protein binding com 99.79
1iuy_A92 Cullin-3 homologue; winged helix, structural genom 99.76
3o2p_E88 Cell division control protein 53; ligase, cell cyc 99.76
2do7_A101 Cullin-4B, CUL-4B; helix-turn-helix motif, structu 99.7
2jt1_A77 PEFI protein; solution structure, winged helix-tur 91.46
3cuo_A99 Uncharacterized HTH-type transcriptional regulato; 89.87
2dk5_A91 DNA-directed RNA polymerase III 39 kDa polypeptide 88.41
1sfx_A109 Conserved hypothetical protein AF2008; structural 87.65
3tgn_A146 ADC operon repressor ADCR; helix-turn-helix, trans 87.33
1y0u_A96 Arsenical resistance operon repressor, putative; s 87.3
3lmm_A583 Uncharacterized protein; multi-domained alpha-beta 87.27
3g3z_A145 NMB1585, transcriptional regulator, MARR family; t 87.26
3hsr_A140 HTH-type transcriptional regulator SARZ; helix-tur 87.2
2htj_A81 P fimbrial regulatory protein KS71A; winged helix- 87.12
3jth_A98 Transcription activator HLYU; transcription factor 86.94
2d1h_A109 ST1889, 109AA long hypothetical transcriptional re 86.01
1qgp_A77 Protein (double stranded RNA adenosine deaminase); 85.9
3ech_A142 MEXR, multidrug resistance operon repressor; winge 85.56
3nrv_A148 Putative transcriptional regulator (MARR/EMRR FAM; 85.56
3r0a_A123 Putative transcriptional regulator; structural gen 85.44
3cdh_A155 Transcriptional regulator, MARR family; helix-turn 85.37
3oop_A143 LIN2960 protein; protein structure initiative, PSI 85.28
4hbl_A149 Transcriptional regulator, MARR family; HTH, trans 85.0
2qww_A154 Transcriptional regulator, MARR family; YP_013417. 84.73
2fbh_A146 Transcriptional regulator PA3341; MARR, transcript 84.64
1xn7_A78 Hypothetical protein YHGG; alpha+beta, GFT structu 84.58
3bpv_A138 Transcriptional regulator; MARR, DNA binding, tran 84.43
2frh_A127 SARA, staphylococcal accessory regulator A; winged 84.34
2fu4_A83 Ferric uptake regulation protein; DNA binding doma 84.32
2gxg_A146 146AA long hypothetical transcriptional regulator; 84.3
3eco_A139 MEPR; mutlidrug efflux pump regulator winged helix 84.24
3bj6_A152 Transcriptional regulator, MARR family; helix-turn 84.05
1jgs_A138 Multiple antibiotic resistance protein MARR; trans 83.38
3bro_A141 Transcriptional regulator; helix_TURN_helix, multi 83.11
1xmk_A79 Double-stranded RNA-specific adenosine deaminase; 83.09
2fa5_A162 Transcriptional regulator MARR/EMRR family; multip 82.84
1u2w_A122 CADC repressor, cadmium efflux system accessory pr 82.65
3e6m_A161 MARR family transcriptional regulator; APC88769, s 82.62
3k0l_A162 Repressor protein; helix-turn-helix, structural ge 82.57
1qbj_A81 Protein (double-stranded RNA specific adenosine D 82.42
2pex_A153 Transcriptional regulator OHRR; transcription regu 82.31
3pqk_A102 Biofilm growth-associated repressor; helix-turn-he 82.3
3bdd_A142 Regulatory protein MARR; putative multiple antibio 82.1
1tbx_A99 ORF F-93, hypothetical 11.0 kDa protein; sulfolobu 82.08
2nnn_A140 Probable transcriptional regulator; structural gen 81.87
1oyi_A82 Double-stranded RNA-binding protein; (alpha+beta) 81.67
3deu_A166 Transcriptional regulator SLYA; MARR, WING-helix, 81.53
3cjn_A162 Transcriptional regulator, MARR family; silicibact 81.43
2hr3_A147 Probable transcriptional regulator; MCSG, structur 81.42
2nyx_A168 Probable transcriptional regulatory protein, RV14; 81.4
2a61_A145 Transcriptional regulator TM0710; APC4350, MCSG, m 81.16
3bja_A139 Transcriptional regulator, MARR family, putative; 81.13
1ku9_A152 Hypothetical protein MJ223; putative transcription 81.09
1bby_A69 RAP30; average structure transcription regulation, 81.02
1lj9_A144 Transcriptional regulator SLYA; HTH DNA binding pr 81.0
1p6r_A82 Penicillinase repressor; transcription regulation, 80.85
2k02_A87 Ferrous iron transport protein C; FEOC, iron-sulfu 80.84
2heo_A67 Z-DNA binding protein 1; protein DLM1-Z-DNA comple 80.7
2rdp_A150 Putative transcriptional regulator MARR; PFAM PF01 80.61
1s3j_A155 YUSO protein; structural genomics, MARR transcript 80.31
2eth_A154 Transcriptional regulator, putative, MAR family; M 80.31
3s2w_A159 Transcriptional regulator, MARR family; structural 80.16
2bv6_A142 MGRA, HTH-type transcriptional regulator MGRA; mul 80.12
2vn2_A128 DNAD, chromosome replication initiation protein; D 80.09
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Back     alignment and structure
Probab=100.00  E-value=1.7e-107  Score=921.22  Aligned_cols=527  Identities=30%  Similarity=0.524  Sum_probs=483.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhhhcCC-----------------------CC-----CCc
Q 043775            9 FDEGWEYIQKGIGKLKRILEGLREPPFSSEEYMALHITIYNMCSQNT-----------------------PN-----NNS   60 (554)
Q Consensus         9 ~e~~W~~l~~ai~~i~~~l~~~~~~~~s~~~y~~lY~~vY~~c~~~~-----------------------~~-----~y~   60 (554)
                      ||++|..|++||++|.   .+   +++|..+||+||++|||||+++.                       |.     .|.
T Consensus         1 f~~~W~~L~~ai~~I~---~~---~~~s~~~~~~LY~~vYn~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~   74 (760)
T 1ldj_A            1 LDQIWDDLRAGIQQVY---TR---QSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYK   74 (760)
T ss_dssp             CHHHHHHHHHHHHHHT---TC---CCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHH
T ss_pred             ChhhHHHHHHHHHHHH---hc---CCCCHHHHHHHHHHHHHHhcCCcccCCCcccccccccccccccccCcchhHHHHHH
Confidence            6899999999999963   33   36999999999999999999871                       21     231


Q ss_pred             hh----------------------------------------------------hccCC------CCcHHHHHHHHHHHH
Q 043775           61 AS----------------------------------------------------CKRRN------IPGFDEFGLACFRDL   82 (554)
Q Consensus        61 ~~----------------------------------------------------v~~~~------~~~i~~l~l~~fr~~   82 (554)
                      ..                                                    |++++      .++||++||.+||++
T Consensus        75 ~l~~~l~~~l~~~~~~~~~~~~e~lL~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~g~~~~~~I~~lgL~~fr~~  154 (760)
T 1ldj_A           75 RLKEFLKNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDC  154 (760)
T ss_dssp             HHHHHHHHHHHHHHHTTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcccccccCCCcccHHHHHHHHHHHH
Confidence            11                                                    55554      789999999999999


Q ss_pred             HHHHHHHHHHHHHHH----HhcCCccCHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHH
Q 043775           83 VYDALKHKAKDAVID----EREREQVDRALLANVLDIFVE------------------------HMLQDTSSYYSRISTN  134 (554)
Q Consensus        83 v~~~i~~~l~~~ll~----eR~g~~id~~~lk~~i~m~~~------------------------~fL~~t~~yY~~~s~~  134 (554)
                      ||.++++++++++|.    +|.|+.||+.+|+++++||++                        +||++|+.||+.+|+.
T Consensus       155 vf~~l~~~l~~~lL~lI~~eR~Ge~id~~lik~vi~ml~~Lg~~~~~~~~~~~~l~vY~~~FE~~fL~~t~~fY~~es~~  234 (760)
T 1ldj_A          155 LFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTE  234 (760)
T ss_dssp             HTTTTTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCcccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999    999999999999999998851                        8999999999999999


Q ss_pred             HhhcCChhHHHHHHHHHHHHHHHHHchhcCcccHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhhccCChHHHHHHHHHH
Q 043775          135 WILKDPCPDYMRKAEECLKKERDRVSRYLQSNGEEKLVEKVQHELLVVYATQLLEKEQSGCGALFRGNKVDDLSRMYRFY  214 (554)
Q Consensus       135 ~i~~~~~~~Yl~~ve~~l~eE~~r~~~yL~~~t~~kl~~~~~~~Li~~~~~~ll~~~~sg~~~ll~~~~~~~L~~ly~L~  214 (554)
                      |+++.++++||++|+.++++|.+||..||+++|.++|.++|+++||.+|.+.|+    +||..||++++.+||++||+|+
T Consensus       235 ~l~~~~~~~Yl~~~e~~l~eE~~R~~~yL~~~t~~~l~~~~~~~Li~~~~~~l~----~~~~~ll~~~~~~dL~~my~L~  310 (760)
T 1ldj_A          235 FLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFH----TEFQNLLDADKNEDLGRMYNLV  310 (760)
T ss_dssp             HHHHSCTTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHH----HHHHHHHHSCCTTHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999885    5899999999999999999999


Q ss_pred             hhhhhh----------------------------------------HHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhcCC
Q 043775          215 RTIRAG----------------------------------------PHDNYMEYVTNCFMDHSLFQRALKEAFKIFCNKT  254 (554)
Q Consensus       215 ~~~~~~----------------------------------------l~~~~~~l~~~~F~~~~~f~~~l~~af~~~iN~~  254 (554)
                      +++++|                                        ++++|+.++..||++|+.|..++++||+.|+|.+
T Consensus       311 ~rv~~gl~~l~~~~~~~i~~~G~~~v~~~~~~~~~~~~~~V~~ll~l~~k~~~lv~~~F~~d~~f~~al~~af~~~iN~~  390 (760)
T 1ldj_A          311 SRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNN  390 (760)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHHHHHHHHHHTTSGGGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHSS
T ss_pred             CcCcchHHHHHHHHHHHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCC
Confidence            999765                                        8999999999999999999999999999999987


Q ss_pred             C------CCCChhhHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhHhccccChHHHHHHHHHHHHHHhcCCCCh-----
Q 043775          255 V------GGFSSSEQLATFCDNILKKSGNEKLSDEAIEETLEKVVKVLVYISDKDLFAEFYRKKLARRLLFDRSR-----  323 (554)
Q Consensus       255 ~------~~~~~~e~la~y~D~~lkk~~~~~~~~~e~~~~l~~i~~lf~~l~~KD~F~~~Y~~~LakRLL~~~s~-----  323 (554)
                      .      +..++||+||+|||.+||++. ++.+++|++..|++++.||+|+++||+|+++|+++||+|||.++|.     
T Consensus       391 ~~~~~~~~~~~~~E~la~y~D~~Lkk~~-k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E  469 (760)
T 1ldj_A          391 AVTKMAQSSSKSPELLARYCDSLLKKSS-KNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAE  469 (760)
T ss_dssp             HHHHHHTSTTHHHHHHHHHHHHHHBCCS-SCCCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHTTCBSCHHHH
T ss_pred             ccccccccccccHHHHHHHhHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCChHHH
Confidence            2      236899999999999999875 5678899999999999999999999999999999999999999986     


Q ss_pred             --------------------------hhHHHHHHHHHHHHhhccCCCCCCceeEEeeccCCCCCCCCCCCCCCCCCcHHH
Q 043775          324 --------------------------TLARKNQTGFEKYLRYNKNAHAGIDLSVTVLATGFWPSYKSSDLNPIFNLPSQM  377 (554)
Q Consensus       324 --------------------------~~s~dl~~~f~~~~~~~~~~~~~~~~~~~VLt~~~WP~~~~~~~~~~~~lP~~l  377 (554)
                                                ..|++++..|++++.+.  ...+++|+|.|||+|+||.+++.++    .||++|
T Consensus       470 ~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~--~~~~~~~~v~VLs~~~WP~~~~~~~----~lP~~l  543 (760)
T 1ldj_A          470 ASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNS--EPLDLDFSIQVLSSGSWPFQQSCTF----ALPSEL  543 (760)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--CCCSSEEEEEEEETTTSCCCCCSCC----CCCGGG
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCCCeeEEecCCCCCCCCCCCCC----cCCHHH
Confidence                                      34677888888877541  2347899999999999999865555    999999


Q ss_pred             HHHHHHHHHHHHhcCCCceeEEeecCceEEEEEEEcCceEEEEecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHH
Q 043775          378 IKCVEVFKRFYETKTKHRKLSWIYSLGQCHINAKFELKNIELIISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRL  457 (554)
Q Consensus       378 ~~~~~~F~~fY~~k~~~RkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~  457 (554)
                      +.+++.|++||.++|+||+|+|+|++|+|+|+++|++++++|+||++||+||++||+.+++|++||++.|||++++|+++
T Consensus       544 ~~~~~~F~~fY~~~~~~RkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~~t~~ei~~~t~i~~~~l~r~  623 (760)
T 1ldj_A          544 ERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQV  623 (760)
T ss_dssp             HHHHHHHHHHTTTTCTTCCEEECGGGCCCEEEESSSSSCCEEECCHHHHHHHHGGGSSSEEEHHHHHHHTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCeEEEecccccEEEEEEECCceEEEEEcHHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhccceeeeecC-----CCCCCCCCCeEEEcccCCCcccccc---------------------------------c
Q 043775          458 LHSLSILYYKILIKEP-----DTKSISRSDYFELNSKFTDRMRGSR---------------------------------S  499 (554)
Q Consensus       458 L~sL~~~k~kiL~~~~-----~~~~~~~~d~f~~N~~F~~~~~ki~---------------------------------R  499 (554)
                      |++|+  +.+||.+.|     +|+++.++|.|.+|.+|++++.||+                                 |
T Consensus       624 L~~l~--k~~iL~~~~~~~~~~~~~~~~~~~f~lN~~F~~k~~ri~i~~~~~~e~~~e~~~~~~~v~~dR~~~i~AaIVR  701 (760)
T 1ldj_A          624 LQILL--KSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVR  701 (760)
T ss_dssp             HHHHH--HTTTEECSCTTCCTTTCCCCTTCEEEECSSCCCSSSSBCCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH--HCCcceeCCCccccccCCCCCCCEEEeeccccCCceEEEecCccccccchhhhhHHHHHHHHHHhHheeeehh
Confidence            99996  788998665     7889999999999999999998876                                 9


Q ss_pred             cccccccCChHHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccCCCCCCCC
Q 043775          500 LSHHRKVLGHQQLVSECIELLGRMFKPAVKAFKKRIEGLISQDYLERYPENPNTF  554 (554)
Q Consensus       500 iMK~~k~l~~~~L~~ev~~~l~~~F~~~~~~iK~~Ie~LIereyl~Rd~~d~~~y  554 (554)
                      |||+||+|+|++|+.||++|+++||+|++.+||+|||+|||||||+||++|+++|
T Consensus       702 IMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYl~R~~~~~~~y  756 (760)
T 1ldj_A          702 IMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTY  756 (760)
T ss_dssp             HHHHSSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECSSSTTEE
T ss_pred             hhhccCCCcHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhccceeeCCCCCcce
Confidence            9999999999999999999999999999999999999999999999999998876
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* Back     alignment and structure
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C Back     alignment and structure
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens} Back     alignment and structure
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B Back     alignment and structure
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens} Back     alignment and structure
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus} Back     alignment and structure
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C Back     alignment and structure
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34 Back     alignment and structure
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B Back     alignment and structure
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2} Back     alignment and structure
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12} Back     alignment and structure
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85 Back     alignment and structure
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50 Back     alignment and structure
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae} Back     alignment and structure
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5 Back     alignment and structure
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae} Back     alignment and structure
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} Back     alignment and structure
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A Back     alignment and structure
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73 Back     alignment and structure
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus} Back     alignment and structure
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50 Back     alignment and structure
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 Back     alignment and structure
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A Back     alignment and structure
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP} Back     alignment and structure
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei} Back     alignment and structure
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3} Back     alignment and structure
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua} Back     alignment and structure
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis} Back     alignment and structure
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} Back     alignment and structure
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Back     alignment and structure
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62 Back     alignment and structure
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* Back     alignment and structure
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D Back     alignment and structure
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli} Back     alignment and structure
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A Back     alignment and structure
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0 Back     alignment and structure
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3} Back     alignment and structure
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28 Back     alignment and structure
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28 Back     alignment and structure
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19 Back     alignment and structure
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} Back     alignment and structure
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A Back     alignment and structure
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} Back     alignment and structure
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP} Back     alignment and structure
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A Back     alignment and structure
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A Back     alignment and structure
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A Back     alignment and structure
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis} Back     alignment and structure
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48 Back     alignment and structure
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} Back     alignment and structure
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19 Back     alignment and structure
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28 Back     alignment and structure
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} Back     alignment and structure
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Back     alignment and structure
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis} Back     alignment and structure
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28 Back     alignment and structure
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus} Back     alignment and structure
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36 Back     alignment and structure
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A Back     alignment and structure
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28 Back     alignment and structure
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B Back     alignment and structure
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp} Back     alignment and structure
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A Back     alignment and structure
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} Back     alignment and structure
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28 Back     alignment and structure
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28 Back     alignment and structure
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei} Back     alignment and structure
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28 Back     alignment and structure
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 554
d2hyec3273 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapien 4e-57
d1ldja3276 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Huma 1e-50
d1ldja2394 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Hum 1e-27
d1ldja2394 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Hum 2e-06
d2hyec2347 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapie 2e-27
d1iuya_92 a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus muscu 4e-14
d1ldja190 a.4.5.34 (A:687-776) Anaphase promoting complex (A 1e-13
d2hyec184 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapien 9e-12
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 273 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Cullin homology domain
superfamily: Cullin homology domain
family: Cullin homology domain
domain: Cullin-4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  190 bits (483), Expect = 4e-57
 Identities = 76/267 (28%), Positives = 130/267 (48%), Gaps = 37/267 (13%)

Query: 260 SSEQLATFCDNILKKSGNEKLSDEAIEETLEKVVKVLVYISDKDLFAEFYRKKLARRLLF 319
            +E +A   D+ L+  GN++ +DE +E TL+K++ +  +I  KD+F  FY+K LA+RLL 
Sbjct: 3   PAELIAKHVDSKLRA-GNKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLV 61

Query: 320 DRSR-------------------------------TLARKNQTGFEKYLRYNKNAHAGID 348
            +S                                 L++     F+++++ N++    ID
Sbjct: 62  GKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQ-NQSDSGPID 120

Query: 349 LSVTVLATGFWPSYKSSDLNPIFNLPSQMIKCVEVFKRFYETKTKHRKLSWIYSLGQCHI 408
           L+V +L  G+WP+Y   +     +L  +MIK  EVFK FY  K   RKL W  +LG   +
Sbjct: 121 LTVNILTMGYWPTYTPME----VHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVL 176

Query: 409 NAKFELKNIELIISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYKI 468
            A+F+    E  +S +   +L +FN  +  S+ ++     +   +L R L SL+    ++
Sbjct: 177 KAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARV 236

Query: 469 LIKEPDTKSISRSDYFELNSKFTDRMR 495
           LIK P  K +   D F  N +F  ++ 
Sbjct: 237 LIKSPKGKEVEDGDKFIFNGEFKHKLF 263
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 276 Back     information, alignment and structure
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 394 Back     information, alignment and structure
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 394 Back     information, alignment and structure
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 10090]} Length = 92 Back     information, alignment and structure
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC) {Human (Homo sapiens) [TaxId: 9606]} Length = 90 Back     information, alignment and structure
>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 84 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query554
d2hyec3273 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1ldja3276 Cullin homolog 1, cul-1 {Human (Homo sapiens) [Tax 100.0
d1ldja2394 Cullin homolog 1, Cul-1 {Human (Homo sapiens) [Tax 100.0
d2hyec2347 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1ldja190 Anaphase promoting complex (APC) {Human (Homo sapi 99.71
d1iuya_92 Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 1 99.69
d2hyec184 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 99.68
d1mkma175 Transcriptional regulator IclR, N-terminal domain 91.0
d1lnwa_141 MexR repressor {Pseudomonas aeruginosa [TaxId: 287 89.97
d1lj9a_144 Transcriptional regulator SlyA {Enterococcus faeca 89.82
d2a61a1139 Transcriptional regulator TM0710 {Thermotoga marit 89.42
d1ylfa1138 Hypothetical protein BC1842 {Bacillus cereus [TaxI 88.8
d1sfxa_109 Hypothetical protein AF2008 {Archaeoglobus fulgidu 87.99
d2etha1140 Putative transcriptional regulator TM0816 {Thermot 87.6
d2frha1115 Pleiotropic regulator of virulence genes, SarA {St 87.45
d2d1ha1109 Hypothetical transcriptional regulator ST1889 {Sul 86.61
d1i1ga160 LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} 86.6
d2cg4a163 Regulatory protein AsnC {Escherichia coli [TaxId: 86.43
d2cfxa163 Transcriptional regulator LrpC {Bacillus subtilis 86.2
d1z91a1137 Organic hydroperoxide resistance transcriptional r 85.87
d1s3ja_143 Putative transcriptional regulator YusO {Bacillus 85.64
d2cyya160 Putative transcriptional regulator PH1519 {Archaeo 85.23
d1jgsa_138 Multiple antibiotic resistance repressor, MarR {Es 85.17
d1p4xa2125 Staphylococcal accessory regulator A homolog, SarS 85.08
d1z05a171 Transcriptional regulator VC2007 N-terminal domain 84.98
d1ub9a_100 Hypothetical protein PH1061 {Archaeon Pyrococcus h 84.48
d1p4xa1125 Staphylococcal accessory regulator A homolog, SarS 84.06
d2fbia1136 Probable transcriptional regulator PA4135 {Pseudom 84.01
d2fxaa1162 Protease production regulatory protein Hpr {Bacill 83.62
d3broa1135 Transcriptional regulator OEOE1854 {Oenococcus oen 83.36
d1hsja1115 Staphylococcal accessory regulator A homolog, SarR 82.79
d2bv6a1136 Transcriptional regulator MgrA {Staphylococcus aur 82.35
d1u2wa1108 Cadmium efflux system accessory protein CadC {Stap 82.28
d2hr3a1145 Probable transcriptional regulator PA3067 {Pseudom 82.05
d1ku9a_151 DNA-binding protein Mj223 {Archaeon Methanococcus 81.89
d3deua1140 Transcriptional regulator SlyA {Salmonella typhimu 81.32
d2bbya_69 DNA-binding domain from rap30 {Human (Homo sapiens 80.74
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Cullin homology domain
superfamily: Cullin homology domain
family: Cullin homology domain
domain: Cullin-4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-48  Score=388.14  Aligned_cols=234  Identities=31%  Similarity=0.592  Sum_probs=215.9

Q ss_pred             ChhhHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhHhccccChHHHHHHHHHHHHHHhcCCCCh---------------
Q 043775          259 SSSEQLATFCDNILKKSGNEKLSDEAIEETLEKVVKVLVYISDKDLFAEFYRKKLARRLLFDRSR---------------  323 (554)
Q Consensus       259 ~~~e~la~y~D~~lkk~~~~~~~~~e~~~~l~~i~~lf~~l~~KD~F~~~Y~~~LakRLL~~~s~---------------  323 (554)
                      ++||+||+|||.+||++. +..++++++..+++++.+|+|++|||+|+.+|+++||+|||.+.+.               
T Consensus         2 ~~~e~la~y~D~~lr~~~-k~~~~~~~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~La~RLL~~~~~~~~~E~~~i~~L~~~   80 (273)
T d2hyec3           2 KPAELIAKHVDSKLRAGN-KEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHE   80 (273)
T ss_dssp             HHHHHHHHHHHHHHSSCG-GGCCSTTHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            579999999999999864 5567889999999999999999999999999999999999998865               


Q ss_pred             ----------------hhHHHHHHHHHHHHhhccCCCCCCceeEEeeccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHH
Q 043775          324 ----------------TLARKNQTGFEKYLRYNKNAHAGIDLSVTVLATGFWPSYKSSDLNPIFNLPSQMIKCVEVFKRF  387 (554)
Q Consensus       324 ----------------~~s~dl~~~f~~~~~~~~~~~~~~~~~~~VLt~~~WP~~~~~~~~~~~~lP~~l~~~~~~F~~f  387 (554)
                                      ..|++++..|++++..... ..+++|+|.||++++||..+..++    .+|++++.+++.|+.|
T Consensus        81 ~g~~~~~kl~~Ml~D~~~S~~l~~~f~~~~~~~~~-~~~~~~~v~vLs~~~WP~~~~~~~----~lP~~l~~~~~~F~~~  155 (273)
T d2hyec3          81 CGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSD-SGPIDLTVNILTMGYWPTYTPMEV----HLTPEMIKLQEVFKAF  155 (273)
T ss_dssp             TCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-CCCCEEEEEEEETTTSCCCCCCCC----CCCHHHHHHHHHHHHH
T ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCCCceEEEEeeCCCCCCCCCCCC----cCCHHHHHHHHHHHHH
Confidence                            3356777788887765432 357899999999999999887666    9999999999999999


Q ss_pred             HHhcCCCceeEEeecCceEEEEEEEcCceEEEEecHHHHHHHHHhhCCCccCHHHHHHHhCCCHHHHHHHHHHhhhccce
Q 043775          388 YETKTKHRKLSWIYSLGQCHINAKFELKNIELIISTYHAAILDLFNASNRLSYSQVITQLNLTHDDLVRLLHSLSILYYK  467 (554)
Q Consensus       388 Y~~k~~~RkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Q~~ILllFN~~~~lt~~ei~~~t~i~~~~l~~~L~sL~~~k~k  467 (554)
                      |.++|+||+|.|++++|+|+|+++|++++++|+||++||+||++||+.+++|+++|++.||+++++++++|.+|+..|.+
T Consensus       156 Y~~~~~~RkL~w~~~ls~~~l~~~~~~~~~~l~~s~~Qa~ILl~fn~~~~~t~~~i~~~~~i~~~~l~~~L~~L~~~k~~  235 (273)
T d2hyec3         156 YLGKHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKAR  235 (273)
T ss_dssp             HHTTSCSEECCBCGGGCEEEEECCCSSCCCEEEEEHHHHHHHHHTTSCCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTC
T ss_pred             HHHhCCCCEEEEecCCccEEEEEEECCCcEEEEEcHHHHHHHHHhcCCCCCcHHHHHHHHCcCHHHHHHHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988899


Q ss_pred             eeeecCCCCCCCCCCeEEEcccCCCcccccc
Q 043775          468 ILIKEPDTKSISRSDYFELNSKFTDRMRGSR  498 (554)
Q Consensus       468 iL~~~~~~~~~~~~d~f~~N~~F~~~~~ki~  498 (554)
                      ||.+.++++++.++|+|.+|.+|+++++||+
T Consensus       236 iL~~~~~~~~~~~~~~~~~N~~F~~k~~kik  266 (273)
T d2hyec3         236 VLIKSPKGKEVEDGDKFIFNGEFKHKLFRIK  266 (273)
T ss_dssp             SEEETTCSSSCCSSCEEEECCCCCCSCSSEE
T ss_pred             eeeecCCCCcCCCCCEEEEeccCCCCCeEEe
Confidence            9999999999999999999999999999886
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]} Back     information, alignment and structure
>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2bbya_ a.4.5.15 (A:) DNA-binding domain from rap30 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure