Citrus Sinensis ID: 043788

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------
Protein Sequence
MKAHAPSQRPTPAFISKPVRRHQSAHDISPRHRFNLIHSKRSSHVTTLSLNKNVPPQSAEFSRRHVFLSPLIAVGASILLQSATASADETQPSPPAQPTTSPVPQNPETVKAEEVVVSRIYDATVIGEPLAVGKDKRKVWEKLMNARVVYLGEAEQVPVRDDRELELQIVKNLRKRCVESERTITLALEAFPSDLQDQLNQYTDKRIDGETLKSYASHWPPQRWQEYEPLLSYCRDNGVQLLACGTPLKVLRTVQAEGIHGLSKADRKLYAPPAGSGFISGFTSISHRSSVDMNSLTQSVPFGPSSYLSAQARVVEDYAMSQIILKAIMDGGANGMLVVVTGASHVTYGSRGTGLPARISKKLQKKNQVVILLDLKGNIFEEREKFL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEcccccccccccccHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHccccHHHHHHHHHcccccccccHHHHHHHHHHccccEEEccccHHHHHHHHHHHHccccHHHHHHcccccccccccccccHHcHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccHHHHHHHHcccccEEEEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHcccccccccccccccccccccccccccccccccccccccccccHHHHHccccEEHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHcccccHEcccHHHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHccHcccHHHHHHccccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccEEEEccccccccHHHHHHcccccEEEEEEccccccccHHHHcc
Coil and Loop (DISEMBL)
mkahapsqrptpafiskpvrrhqsahdisprhrfnlihskrsshvttlslnknvppqsaefsrrhvflSPLIAVGASILLqsatasadetqpsppaqpttspvpqnpetvkaeEVVVSRIYdatvigeplavgkDKRKVWEKLMNARVVYLgeaeqvpvrddRELELQIVKNLRKRCVESERTITLALEAFPSDLQDQLNQytdkridgetlksyashwppqrwqeyepllsycrdngvqllacgtPLKVLRTVQAEGihglskadrklyappagsgfisgftsishrssvdmnsltqsvpfgpssylSAQARVVEDYAMSQIILKAIMDGGANGMLVVVTGAshvtygsrgtglpaRISKKLQKKNQVVILLDLKGNIFEEREKFL
Flexible Loop (DISEMBL)
mkahapsqrptpafiskpvrrhqSAHDISPRHRFNLIHSKRSSHVTTLSLNKNVPPQSAEFSRRHVFLSPLIAVGASILLQSATASADETqpsppaqpttspvpqnpetvKAEEVVVSRIydatvigeplavgkdkrKVWEKLMNARVVYLgeaeqvpvrddreLELQIVKnlrkrcveSERTITLAleafpsdlqdQLNQYTDKRIDGETLKSYASHWPPQRWQEYEPLLSYCRDNGVQLLACGTPLKVLRTVQAEGIHGLSKADRKLYAPPAGSGFISGFTSISHRSSVDMNSLTQSVPFGPSSYLSAQARVVEDYAMSQIILKAIMDGGANGMLVVVTGASHVTYGSrgtglpariskklqkknqvvilldlkgnifeerekfl
Low Complexity Region (SEG)
MKAHAPSQRPTPAFISKPVRRHQSAHDISPRHRFNLIHSKRSSHVTTLSLNKNVPPQSAEFSRRHVFLSPLIAVGASILLQSATASADEtqpsppaqpttspvpqNPETVKAEEVVVSRIYDATVIGEPLAVGKDKRKVWEKLMNARVVYLGEAEQVPVRDDRELELQIVKNLRKRCVESERTITLALEAFPSDLQDQLNQYTDKRIDGETLKSYASHWPPQRWQEYEPLLSYCRDNGVQLLACGTPLKVLRTVQAEGIHGLSKADRKLYAPPAgsgfisgftsisHRSSVDMNSLTQSVPFGPSSYLSAQARVVEDYAMSQIILKAIMDGGANGMLVVVTGASHVTYGSRGTGLPARISKKLQKKNQVVILLDLKGNIFEEREKFL
Disordered region (IsUnstruct)
**************************************************************RRHVFLSPLIAVGASILL*********************************EVVVSRIYDATVIGEPLAVGKDKRKVWEKLMNARVVYLGEAEQVPVRDDRELELQIVKNLRKRCVESERTITLALEAFPSDLQDQLNQYTDKRIDGETLKSYASHWPPQRWQEYEPLLSYCRDNGVQLLACGTPLKVLRTVQAEGIHGLSKADRKLYAPPAGSGFISGFTS*********************SYLSAQARVVEDYAMSQIILKAIMDGGANGMLVVVTGASHVTYGSRGTGLPARISKKLQKKNQVVILLDLKGNIF*******
Disordered Region (DISOPRED)
******************************************************************FLSPLIAVGASILLQSA*********************************VSRIYDATVIGEPLAVGKDKRKVWEKLMNARVVYLGEAEQVPVRDDRELELQIVKNLRKRCVESERTITLALEAFPSDLQDQLNQYTDKRIDGETLKSYASHWPPQRWQEYEPLLSYCRDNGVQLLACGTPLKVLRTVQAEGIHGLSKADRKLYAPPAGSGFI******************************AQARVVEDYAMSQIILKAIMDGGANGMLVVVTGASHVTYGSRGTGLPARISKKLQKKNQVVILLDLKGNIF***EKFL
Disordered Region (DISEMBL)
**********TPAFIS***********ISPRHRFNLIHSKRSSHVTTLSLNKNVPPQSAEFSRRHVFLSPLIAVGASILLQSA*************************TVKAEEVVVSRIYDATVIGEPLAVGKDKRKVWEKLMNARVVYLGEAEQVPVRDDRELELQIVKNLRKRCVESERTITLALEAFPSDLQDQLNQYTDKRIDGETLKSYASHWPPQRWQEYEPLLSYCRDNGVQLLACGTPLKVLRTVQAEGIHGLSKADRKLYAPPAGSGFISGFTSISHRSSVDMNSLTQSVPFGPSSYLSAQARVVEDYAMSQIILKAIMDGGANGMLVVVTGASHVTYGSRGTGLPARISKKLQKKNQVVILLDLKGNIFEEREKFL
Disordered Region (DISPRO)
*************************************************************SRRHVFLSPLIAVGASILLQSATAS***************************EVVVSRIYDATVIGEPLAVGKDKRKVWEKLMNARVVYLGEAEQVPVRDDRELELQIVKNLRKRCVESERTITLALEAFPSDLQDQLNQYTDKRIDGETLKSYASHWPPQRWQEYEPLLSYCRDNGVQLLACGTPLKVLRTVQAEGIHGLSKADRKLYAPPAGSGFISGFTSISHRSSVDMNSLTQSVPFGPSSYLSAQARVVEDYAMSQIILKAIMDGGANGMLVVVTGASHVTYGSRGTGLPARISKKLQKKNQVVILLDLKGNIFEE****L
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKAHAPSQRPTPAFISKPVRRHQSAHDISPRHRFNLIHSKRSSHVTTLSLNKNVPPQSAEFSRRHVFLSPLIAVGASILLQSATASADETQPSPPAQPTTSPVPQNPETVKAEEVVVSRIYDATVIGEPLAVGKDKRKVWEKLMNARVVYLGEAEQVPVRDDRELELQIVKNLRKRCVESERTITLALEAFPSDLQDQLNQYTDKRIDGETLKSYASHWPPQRWQEYEPLLSYCRDNGVQLLACGTPLKVLRTVQAEGIHGLSKADRKLYAPPAGSGFISGFTSISHRSSVDMNSLTQSVPFGPSSYLSAQARVVEDYAMSQIILKAIMDGGANGMLVVVTGASHVTYGSRGTGLPARISKKLQKKNQVVILLDLKGNIFEEREKFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	387
449441278	756	PREDICTED: uncharacterized protein LOC10	0.806	0.412	0.743	1e-134
449520311	756	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.806	0.412	0.743	1e-134
225448586	749	PREDICTED: uncharacterized protein LOC10	0.803	0.415	0.750	1e-134
147799492	749	hypothetical protein VITISV_028159 [Viti	0.803	0.415	0.741	1e-132
224098740	726	predicted protein [Populus trichocarpa]	0.788	0.420	0.738	1e-128
255559571	717	conserved hypothetical protein [Ricinus	0.878	0.474	0.694	1e-128
357432833	673	hypothetical protein [Glycine max]	0.811	0.466	0.708	1e-127
356567996	747	PREDICTED: uncharacterized protein LOC10	0.940	0.487	0.637	1e-127
356540017	748	PREDICTED: uncharacterized protein LOC10	0.956	0.494	0.616	1e-126
357461441	780	Chloroplast lumen common protein family	0.808	0.401	0.690	1e-125

>gi|449441278|ref|XP_004138409.1| PREDICTED: uncharacterized protein LOC101220818 [Cucumis sativus]

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 235/316 (74%), Positives = 266/316 (84%), Gaps = 4/316 (1%)

Query: 62  SRRHVFLSPLIAVGASILLQSATASADETQP---SPPAQPTTSPVPQNPETVKAEEVVVS 118
           +RR V   PLI +GA   LQSA   A+E      +P  +  TSP P        EEV+ S
Sbjct: 85  TRRAVLGVPLIVIGAR-FLQSAVVRAEEKSSETVTPVVEAVTSPSPSPIAPTAEEEVITS 143

Query: 119 RIYDATVIGEPLAVGKDKRKVWEKLMNARVVYLGEAEQVPVRDDRELELQIVKNLRKRCV 178
           RIYDATVIGEPLAVGKDK KVWEK+MNARVVYLGEAEQVP+RDD+ELEL+IVKNL++RC 
Sbjct: 144 RIYDATVIGEPLAVGKDKSKVWEKIMNARVVYLGEAEQVPIRDDKELELEIVKNLKRRCG 203

Query: 179 ESERTITLALEAFPSDLQDQLNQYTDKRIDGETLKSYASHWPPQRWQEYEPLLSYCRDNG 238
           ESERT++LALEAFPSDLQ+QLNQY DK IDGETLKSY +HWPPQRWQEYEPLLSYCR NG
Sbjct: 204 ESERTLSLALEAFPSDLQEQLNQYVDKTIDGETLKSYTAHWPPQRWQEYEPLLSYCRVNG 263

Query: 239 VQLLACGTPLKVLRTVQAEGIHGLSKADRKLYAPPAGSGFISGFTSISHRSSVDMNSLTQ 298
           V+L+ACGTPLKVLR VQAEGI GLSKADRK++APPAGSGFISGF +IS R+S D+NS  Q
Sbjct: 264 VRLIACGTPLKVLRIVQAEGIRGLSKADRKVFAPPAGSGFISGFAAISRRTSADLNSSYQ 323

Query: 299 SVPFGPSSYLSAQARVVEDYAMSQIILKAIMDGGANGMLVVVTGASHVTYGSRGTGLPAR 358
            +PFGPSSYLSAQ+RVVE+YAMSQIIL+A+ DGG  GMLVVVTGASHV YGSRGTGLPAR
Sbjct: 324 PIPFGPSSYLSAQSRVVEEYAMSQIILQAMQDGGGTGMLVVVTGASHVAYGSRGTGLPAR 383

Query: 359 ISKKLQKKNQVVILLD 374
           IS+K+ KKNQVV+LLD
Sbjct: 384 ISRKVPKKNQVVVLLD 399

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520311|ref|XP_004167177.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101230293 [Cucumis sativus]

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 235/316 (74%), Positives = 266/316 (84%), Gaps = 4/316 (1%)

Query: 62  SRRHVFLSPLIAVGASILLQSATASADETQP---SPPAQPTTSPVPQNPETVKAEEVVVS 118
           +RR V   PLI +GA   LQSA   A+E      +P  +  TSP P        EEV+ S
Sbjct: 85  TRRAVLGVPLIVIGAR-FLQSAVVRAEEKSSETVTPVVEAVTSPSPSPIAPTAEEEVITS 143

Query: 119 RIYDATVIGEPLAVGKDKRKVWEKLMNARVVYLGEAEQVPVRDDRELELQIVKNLRKRCV 178
           RIYDATVIGEPLAVGKDK KVWEK+MNARVVYLGEAEQVP+RDD+ELEL+IVKNL++RC 
Sbjct: 144 RIYDATVIGEPLAVGKDKSKVWEKIMNARVVYLGEAEQVPIRDDKELELEIVKNLKRRCG 203

Query: 179 ESERTITLALEAFPSDLQDQLNQYTDKRIDGETLKSYASHWPPQRWQEYEPLLSYCRDNG 238
           ESERT++LALEAFPSDLQ+QLNQY DK IDGETLKSY +HWPPQRWQEYEPLLSYCR NG
Sbjct: 204 ESERTLSLALEAFPSDLQEQLNQYVDKTIDGETLKSYTAHWPPQRWQEYEPLLSYCRVNG 263

Query: 239 VQLLACGTPLKVLRTVQAEGIHGLSKADRKLYAPPAGSGFISGFTSISHRSSVDMNSLTQ 298
           V+L+ACGTPLKVLR VQAEGI GLSKADRK++APPAGSGFISGF +IS R+S D+NS  Q
Sbjct: 264 VRLIACGTPLKVLRIVQAEGIRGLSKADRKVFAPPAGSGFISGFAAISRRTSADLNSSYQ 323

Query: 299 SVPFGPSSYLSAQARVVEDYAMSQIILKAIMDGGANGMLVVVTGASHVTYGSRGTGLPAR 358
            +PFGPSSYLSAQ+RVVE+YAMSQIIL+A+ DGG  GMLVVVTGASHV YGSRGTGLPAR
Sbjct: 324 PIPFGPSSYLSAQSRVVEEYAMSQIILQAMQDGGGTGMLVVVTGASHVAYGSRGTGLPAR 383

Query: 359 ISKKLQKKNQVVILLD 374
           IS+K+ KKNQVV+LLD
Sbjct: 384 ISRKVPKKNQVVVLLD 399

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448586|ref|XP_002278231.1| PREDICTED: uncharacterized protein LOC100253544 [Vitis vinifera]

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 235/313 (75%), Positives = 267/313 (85%), Gaps = 2/313 (0%)

Query: 62  SRRHVFLSPLIAVGASILLQSATASADETQPSPPAQPTTSPVPQNPETVKAEEVVVSRIY 121
           +RR V ++P +A+GA   L+S  A A+E   +      +  VP   E  K EE +VSRIY
Sbjct: 82  TRREVLVTPFLAIGA-YSLRSVVARAEEGTEAVMPAAASGTVPAAAEK-KMEEAIVSRIY 139

Query: 122 DATVIGEPLAVGKDKRKVWEKLMNARVVYLGEAEQVPVRDDRELELQIVKNLRKRCVESE 181
           DATVIGEP+A+GKDKRKVWEKLMNAR+VYLGEAEQVP+RDDRELEL+IVK LRKRC E+E
Sbjct: 140 DATVIGEPMALGKDKRKVWEKLMNARIVYLGEAEQVPIRDDRELELEIVKKLRKRCAENE 199

Query: 182 RTITLALEAFPSDLQDQLNQYTDKRIDGETLKSYASHWPPQRWQEYEPLLSYCRDNGVQL 241
           R ++LALEAFP +LQ+ LNQY D RIDGETLKSYASHWPPQRWQEYEPLLSYCRDNGV+L
Sbjct: 200 RPLSLALEAFPCNLQEPLNQYMDYRIDGETLKSYASHWPPQRWQEYEPLLSYCRDNGVRL 259

Query: 242 LACGTPLKVLRTVQAEGIHGLSKADRKLYAPPAGSGFISGFTSISHRSSVDMNSLTQSVP 301
           +ACGTPL+VLRTVQAEGI GLSKA+R+ YAPPAGSGFISGFTSIS +SS+D NS  QSVP
Sbjct: 260 VACGTPLEVLRTVQAEGIRGLSKAERRKYAPPAGSGFISGFTSISRKSSIDTNSPNQSVP 319

Query: 302 FGPSSYLSAQARVVEDYAMSQIILKAIMDGGANGMLVVVTGASHVTYGSRGTGLPARISK 361
           FGPSSYLSAQARVVED+ MSQIIL+ ++DGG  GMLVVVTGASHV YGSRGTGLPARISK
Sbjct: 320 FGPSSYLSAQARVVEDHTMSQIILQEMVDGGTTGMLVVVTGASHVMYGSRGTGLPARISK 379

Query: 362 KLQKKNQVVILLD 374
           KLQK+NQ VILLD
Sbjct: 380 KLQKRNQTVILLD 392

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147799492|emb|CAN64033.1| hypothetical protein VITISV_028159 [Vitis vinifera]

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 232/313 (74%), Positives = 264/313 (84%), Gaps = 2/313 (0%)

Query: 62  SRRHVFLSPLIAVGASILLQSATASADETQPSPPAQPTTSPVPQNPETVKAEEVVVSRIY 121
           +RR V ++P +A+GA   L+S  A A+E   +      +  VP   E  K EE +VSRIY
Sbjct: 82  TRREVLVTPFLAIGA-YSLRSVVARAEEGTEAVMPAAASGTVPAAAEK-KMEEAIVSRIY 139

Query: 122 DATVIGEPLAVGKDKRKVWEKLMNARVVYLGEAEQVPVRDDRELELQIVKNLRKRCVESE 181
           DATVIGEP+A+GKDKRKVWEKLMNAR+VYLGEAEQVP+RDDRELEL+IVK LRKRC E+E
Sbjct: 140 DATVIGEPMALGKDKRKVWEKLMNARIVYLGEAEQVPIRDDRELELEIVKKLRKRCAENE 199

Query: 182 RTITLALEAFPSDLQDQLNQYTDKRIDGETLKSYASHWPPQRWQEYEPLLSYCRDNGVQL 241
           R ++LALEAFP +LQ+ LNQY D RIDGETLKSYASHWP Q WQEYEP LSYCRDNGV+L
Sbjct: 200 RPLSLALEAFPCNLQEXLNQYMDYRIDGETLKSYASHWPXQXWQEYEPXLSYCRDNGVRL 259

Query: 242 LACGTPLKVLRTVQAEGIHGLSKADRKLYAPPAGSGFISGFTSISHRSSVDMNSLTQSVP 301
           +ACGTPL+VLRTVQAEGI GLSKA+R+ YAPPAGSGFISGFTSIS +SS+D NS  QSVP
Sbjct: 260 VACGTPLEVLRTVQAEGIRGLSKAERRKYAPPAGSGFISGFTSISRKSSIDTNSPNQSVP 319

Query: 302 FGPSSYLSAQARVVEDYAMSQIILKAIMDGGANGMLVVVTGASHVTYGSRGTGLPARISK 361
           FGPSSYLSAQARVVED+ MSQIIL+ ++DGG  GMLVVVTGASHV YGSRGTGLPARISK
Sbjct: 320 FGPSSYLSAQARVVEDHTMSQIILQEMVDGGTTGMLVVVTGASHVMYGSRGTGLPARISK 379

Query: 362 KLQKKNQVVILLD 374
           KLQK+NQ VILLD
Sbjct: 380 KLQKRNQTVILLD 392

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098740|ref|XP_002311251.1| predicted protein [Populus trichocarpa] gi|222851071|gb|EEE88618.1| predicted protein [Populus trichocarpa]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 229/310 (73%), Positives = 267/310 (86%), Gaps = 5/310 (1%)

Query: 66  VFLSPLIAVGASILLQSATASADETQPSPPAQPTTSPVPQNPETVKAEEVVVSRIYDATV 125
           V L+PL+A+G SIL QSA + A+     P + P   P  +  +  KAEEV+ SRIYDATV
Sbjct: 64  VLLTPLLALGVSIL-QSAASKAEVANKEPDSPPPPPPPVEAEK--KAEEVISSRIYDATV 120

Query: 126 IGEPLAVGKDKRKVWEKLMNARVVYLGEAEQVPVRDDRELELQIVKNLRKRCVESERTIT 185
           IGEP+AVGKDKRKVWEK+MN R+VYLGEAEQVP++DD+ELEL+IVKNL+K+C E E++I+
Sbjct: 121 IGEPMAVGKDKRKVWEKIMNGRIVYLGEAEQVPIKDDKELELEIVKNLKKQCDEREKSIS 180

Query: 186 LALEAFPSDLQDQLNQYTDKR-IDGETLKSYASHWPPQRWQEYEPLLSYCRDNGVQLLAC 244
           LA+EAFP DLQ  LN+Y DKR IDGETLK Y + WPPQ W+E EPLLSYCRDNG++++AC
Sbjct: 181 LAMEAFPCDLQRLLNEYLDKRWIDGETLKGYMTQWPPQGWRECEPLLSYCRDNGIRIVAC 240

Query: 245 GTPLKVLRTVQAEGIHGLSKADRKLYAPPAGSGFISGFTSISHRSSVDMNSLTQSVPFGP 304
           G PLKVLRTVQAEGI GLSKADRKLYAPPAG+GFISGF+SIS RS+ DMN+  QSVPFGP
Sbjct: 241 GVPLKVLRTVQAEGIRGLSKADRKLYAPPAGTGFISGFSSISRRST-DMNAPKQSVPFGP 299

Query: 305 SSYLSAQARVVEDYAMSQIILKAIMDGGANGMLVVVTGASHVTYGSRGTGLPARISKKLQ 364
           SSYLSAQARVVED+AMSQIIL+A++DGGANG+LVVVTGASHV YGSRGTGLPARISKK Q
Sbjct: 300 SSYLSAQARVVEDHAMSQIILQAVIDGGANGLLVVVTGASHVMYGSRGTGLPARISKKTQ 359

Query: 365 KKNQVVILLD 374
           KKNQVVILLD
Sbjct: 360 KKNQVVILLD 369

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559571|ref|XP_002520805.1| conserved hypothetical protein [Ricinus communis] gi|223539936|gb|EEF41514.1| conserved hypothetical protein [Ricinus communis]

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 241/347 (69%), Positives = 277/347 (79%), Gaps = 7/347 (2%)

Query: 28  ISPRHRFNLIHSKRSSHVTTLSLNKNVPPQSAEFSRRHVFLSPLIAVGASILLQSATASA 87
           +SP  + +L H   S    TL L +    Q+   +RR V L+PL+A+GAS+LLQS+ +S+
Sbjct: 20  VSPSPKLHLRHQFNSRRNFTL-LVRCTSAQTQNATRRSVLLTPLLALGASVLLQSSASSS 78

Query: 88  DETQPSPPAQPTTSPVPQNPETVKAEEVVVSRIYDATVIGEPLAVGKDKRKVWEKLMNAR 147
                SPP     SP         A   + SRIYDATVIGEP+AVGKDKRKVWEKL NAR
Sbjct: 79  KAEPSSPPPPAPPSP-----AAGAAAAEINSRIYDATVIGEPMAVGKDKRKVWEKLTNAR 133

Query: 148 VVYLGEAEQVPVRDDRELELQIVKNLRKRCVESERTITLALEAFPSDLQDQLNQYTDKRI 207
           +VYLGEAEQVPV+DD+ELEL+I KNL KRCVE+E++I+LA+E FP DLQ Q+NQ+ D RI
Sbjct: 134 IVYLGEAEQVPVKDDKELELEIFKNLTKRCVENEKSISLAMEMFPCDLQPQVNQFIDGRI 193

Query: 208 DGETLKSYASHWPPQRWQEYEPLLSYCRDNGVQLLACGTPLKVLRTVQAEGIHGLSKADR 267
           DGETLKSY +HWP Q WQEYEPLL+YCRDN V+++ACGTPLKV+RTVQAEGI GL KADR
Sbjct: 194 DGETLKSYLTHWPVQGWQEYEPLLNYCRDNRVRIVACGTPLKVIRTVQAEGIRGLPKADR 253

Query: 268 KLYAPPAGSGFISGFTSISHRSSVDMNSLTQSVPFGPSSYLSAQARVVEDYAMSQIILKA 327
           KLYAPPAGSGFISGFTSIS R S+DMN   QSVPFGPSSYLSAQARVVEDY MSQIIL+A
Sbjct: 254 KLYAPPAGSGFISGFTSISRR-SIDMNYPYQSVPFGPSSYLSAQARVVEDYTMSQIILQA 312

Query: 328 IMDGGANGMLVVVTGASHVTYGSRGTGLPARISKKLQKKNQVVILLD 374
           + DGGA GMLVVVTGASHV YG RGTGLPARISKK+QKKNQVVILLD
Sbjct: 313 VADGGATGMLVVVTGASHVMYGPRGTGLPARISKKMQKKNQVVILLD 359

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357432833|gb|AET79247.1| hypothetical protein [Glycine max]

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 224/316 (70%), Positives = 266/316 (84%), Gaps = 2/316 (0%)

Query: 59  AEFSRRHVFLSPLIAVGASILLQSATASADETQPSPPAQPTTSPVPQNPETVKAEEVVVS 118
           A  SRR V ++P +  GASILL +ATA A+E     P   +     + P+  + EEV+ S
Sbjct: 81  ARSSRRGVLMAPFLVAGASILLSAATARAEEKAAESPLA-SAPKPEEPPKKKEEEEVITS 139

Query: 119 RIYDATVIGEPLAVGKDKRKVWEKLMNARVVYLGEAEQVPVRDDRELELQIVKNLRKRCV 178
           RIYDATVIGEPLA+GK+K KVWEKLMNARVVYLGEAEQVPVRDDRELEL+IVKNL +RC+
Sbjct: 140 RIYDATVIGEPLAIGKEKGKVWEKLMNARVVYLGEAEQVPVRDDRELELEIVKNLHRRCL 199

Query: 179 ESERTITLALEAFPSDLQDQLNQYTDKRIDGETLKSYASHWPPQRWQEYEPLLSYCRDNG 238
           E E+ ++LALE FP++LQ+ LNQY DK+IDG+TLKSY  HWPPQRWQEYEP+LSYCR+NG
Sbjct: 200 EKEKLLSLALEVFPANLQEPLNQYMDKKIDGDTLKSYTLHWPPQRWQEYEPILSYCRENG 259

Query: 239 VQLLACGTPLKVLRTVQAEGIHGLSKADRKLYAPPAGSGFISGFTSISHRSSVDMNSLTQ 298
           + L+ACGTPLK+LRTVQAEGI GL+K +RKLYAPPAGSGFISGFTSIS RSSVD ++   
Sbjct: 260 IHLVACGTPLKILRTVQAEGIRGLTKDERKLYAPPAGSGFISGFTSISRRSSVD-STQNL 318

Query: 299 SVPFGPSSYLSAQARVVEDYAMSQIILKAIMDGGANGMLVVVTGASHVTYGSRGTGLPAR 358
           S+PFGPSSYLSAQARVV++Y+MSQIIL+ ++DGG  GML+VVTGASHVTYGSRGTG+PAR
Sbjct: 319 SIPFGPSSYLSAQARVVDEYSMSQIILQNVLDGGVTGMLIVVTGASHVTYGSRGTGVPAR 378

Query: 359 ISKKLQKKNQVVILLD 374
           IS K+QKKN  VILLD
Sbjct: 379 ISGKIQKKNHAVILLD 394

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567996|ref|XP_003552200.1| PREDICTED: uncharacterized protein LOC100790538 [Glycine max]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 237/372 (63%), Positives = 285/372 (76%), Gaps = 8/372 (2%)

Query: 5   APSQRPTPAFISKPVRRHQSAHDISPRHRFNL--IHSKRSSHVTTLSLNKNVPPQSAEFS 62
           APS  P  A      RR  +A     R R +L   H+ R +  +    +       A  S
Sbjct: 29  APSDPPHDAPGGLEFRRVSTAK----RRRVSLSVCHASRVTAASNPGGSDGDGDTRARSS 84

Query: 63  RRHVFLSPLIAVGASILLQSATASADETQPSPPAQPTTSPVPQNPETVKAEEVVVSRIYD 122
           RR V ++P +  GASILL +ATA A+E     P   +     + P+  + EEV+ SRIYD
Sbjct: 85  RRGVLMAPFLVAGASILLSAATARAEEKAAESPLA-SAPKPEEPPKKKEEEEVITSRIYD 143

Query: 123 ATVIGEPLAVGKDKRKVWEKLMNARVVYLGEAEQVPVRDDRELELQIVKNLRKRCVESER 182
           ATVIGEPLA+GK+K KVWEKLMNARVVYLGEAEQVPVRDDRELEL+IVKNL +RC+E E+
Sbjct: 144 ATVIGEPLAIGKEKGKVWEKLMNARVVYLGEAEQVPVRDDRELELEIVKNLHRRCLEKEK 203

Query: 183 TITLALEAFPSDLQDQLNQYTDKRIDGETLKSYASHWPPQRWQEYEPLLSYCRDNGVQLL 242
            ++LALE FP++LQ+ LNQY DK+IDG+TLKSY  HWPPQRWQEYEP+LSYCR+NG+ L+
Sbjct: 204 LLSLALEVFPANLQEPLNQYMDKKIDGDTLKSYTLHWPPQRWQEYEPILSYCRENGIHLV 263

Query: 243 ACGTPLKVLRTVQAEGIHGLSKADRKLYAPPAGSGFISGFTSISHRSSVDMNSLTQSVPF 302
           ACGTPLK+LRTVQAEGI GL+K +RKLYAPPAGSGFISGFTSIS RSSVD ++   S+PF
Sbjct: 264 ACGTPLKILRTVQAEGIRGLTKDERKLYAPPAGSGFISGFTSISRRSSVD-STQNLSIPF 322

Query: 303 GPSSYLSAQARVVEDYAMSQIILKAIMDGGANGMLVVVTGASHVTYGSRGTGLPARISKK 362
           GPSSYLSAQARVV++Y+MSQIIL+ ++DGG  GML+VVTGASHVTYGSRGTG+PARIS K
Sbjct: 323 GPSSYLSAQARVVDEYSMSQIILQNVLDGGVTGMLIVVTGASHVTYGSRGTGVPARISGK 382

Query: 363 LQKKNQVVILLD 374
           +QKKN  VILLD
Sbjct: 383 IQKKNHAVILLD 394

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540017|ref|XP_003538488.1| PREDICTED: uncharacterized protein LOC100810366 [Glycine max]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/381 (61%), Positives = 288/381 (75%), Gaps = 11/381 (2%)

Query: 4   HAPSQRPTPAFISKPVR-RHQSAHDI-------SPRHRFNLI--HSKRSSHVTTLSLNKN 53
           H P  R T A  + P    H SA  +       S R   NL   H+ R +  +    +  
Sbjct: 16  HVPCFRGTTAARATPSEPHHDSAGGLEFRRVSTSKRRLINLSVRHASRVTAASNPGGSDG 75

Query: 54  VPPQSAEFSRRHVFLSPLIAVGASILLQSATASADETQPSPPAQPTTSPVPQNPETVKAE 113
                A   RR V ++P +  GASILL +ATA+A   + +  + P  +   + P+  + E
Sbjct: 76  DGDTRARSCRRGVLMTPFLVAGASILLSAATATARADEKAAESAPAPAAPEEPPKKKEEE 135

Query: 114 EVVVSRIYDATVIGEPLAVGKDKRKVWEKLMNARVVYLGEAEQVPVRDDRELELQIVKNL 173
           EV+ SRIYDATVIGEPLA+GK+K K+WEKLMNARVVYLGEAEQVPVRDDRELEL+IVKNL
Sbjct: 136 EVITSRIYDATVIGEPLAIGKEKGKIWEKLMNARVVYLGEAEQVPVRDDRELELEIVKNL 195

Query: 174 RKRCVESERTITLALEAFPSDLQDQLNQYTDKRIDGETLKSYASHWPPQRWQEYEPLLSY 233
            +RC+  E+ ++LALE FP++LQ+ LNQY DK+IDG+TLKSY  HWPPQRWQEYEP+LSY
Sbjct: 196 HRRCLVKEKRLSLALEVFPANLQEPLNQYMDKKIDGDTLKSYTLHWPPQRWQEYEPILSY 255

Query: 234 CRDNGVQLLACGTPLKVLRTVQAEGIHGLSKADRKLYAPPAGSGFISGFTSISHRSSVDM 293
           C +NG++L+ACGTPLK+LRTVQAEGI GL+K +RKLYAPPAGSGFISGFTSIS RSSVD 
Sbjct: 256 CHENGIRLVACGTPLKILRTVQAEGIRGLTKDERKLYAPPAGSGFISGFTSISRRSSVD- 314

Query: 294 NSLTQSVPFGPSSYLSAQARVVEDYAMSQIILKAIMDGGANGMLVVVTGASHVTYGSRGT 353
           ++   S+PFGPSSYLSAQARVV++Y+MSQIIL+ ++DGG  GML+VVTGASHVTYGSRGT
Sbjct: 315 STQNLSIPFGPSSYLSAQARVVDEYSMSQIILQNVLDGGVTGMLIVVTGASHVTYGSRGT 374

Query: 354 GLPARISKKLQKKNQVVILLD 374
           G+PARIS K+QKKNQ VILLD
Sbjct: 375 GVPARISGKIQKKNQAVILLD 395

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461441|ref|XP_003601002.1| Chloroplast lumen common protein family [Medicago truncatula] gi|355490050|gb|AES71253.1| Chloroplast lumen common protein family [Medicago truncatula]

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/320 (69%), Positives = 266/320 (83%), Gaps = 7/320 (2%)

Query: 59  AEFSRRHVFLSPLIAVGASILLQSATASADETQP----SPPAQPTTSPVPQNPETVKAEE 114
           A  +RR V ++P +A GAS LL +AT  A E +     + P + T   V         EE
Sbjct: 79  ARSNRRGVLMAPFLAAGASFLLSAATTRAAEEEKLKENTAPVEATV--VKPEEVKKIEEE 136

Query: 115 VVVSRIYDATVIGEPLAVGKDKRKVWEKLMNARVVYLGEAEQVPVRDDRELELQIVKNLR 174
           V+ SRIYDAT IGEPLA+GK+K KVWEKLMNARVVYLGEAEQVPVRDD+ELEL+IVKNL 
Sbjct: 137 VITSRIYDATAIGEPLAIGKEKGKVWEKLMNARVVYLGEAEQVPVRDDKELELEIVKNLH 196

Query: 175 KRCVESERTITLALEAFPSDLQDQLNQYTDKRIDGETLKSYASHWPPQRWQEYEPLLSYC 234
           KRCVE ++ ++LA+EAFPS+LQ+ LNQY DK++DGETLKSY +HWPP+RWQEYEP+LSYC
Sbjct: 197 KRCVEVDKRLSLAIEAFPSNLQEPLNQYMDKKMDGETLKSYTTHWPPERWQEYEPILSYC 256

Query: 235 RDNGVQLLACGTPLKVLRTVQAEGIHGLSKADRKLYAPPAGSGFISGFTSISHRSSVDMN 294
           R+NG++L+ACGTPLK+LRTVQAEGI GL+KA+RKLYAPPAGSGFISGF+S+S R S D +
Sbjct: 257 RENGIRLVACGTPLKILRTVQAEGISGLTKAERKLYAPPAGSGFISGFSSMSRRYSAD-S 315

Query: 295 SLTQSVPFGPSSYLSAQARVVEDYAMSQIILKAIMDGGANGMLVVVTGASHVTYGSRGTG 354
           +   S PFGPSSYLSAQARVV++Y MSQ IL+ ++DGGA GML+VVTGASHVTYG+RGTG
Sbjct: 316 TPNLSFPFGPSSYLSAQARVVDEYTMSQTILQNMLDGGATGMLIVVTGASHVTYGARGTG 375

Query: 355 LPARISKKLQKKNQVVILLD 374
           +PARIS+KLQKKNQVVILLD
Sbjct: 376 VPARISRKLQKKNQVVILLD 395

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	387
TAIR|locus:2078446	745	AT3G56140 "AT3G56140" [Arabido	0.875	0.455	0.623	8.7e-111
TAIR|locus:2063136	735	AT2G40400 [Arabidopsis thalian	0.852	0.448	0.631	3.8e-110
UNIPROTKB|Q747X6	282	GSU3139 "Uncharacterized prote	0.573	0.787	0.233	1.1e-10
TIGR_CMR|GSU_3139	282	GSU_3139 "conserved hypothetic	0.573	0.787	0.233	1.1e-10

TAIR|locus:2078446 AT3G56140 "AT3G56140" [Arabidopsis thaliana (taxid:3702)]

 Score = 1094 (390.2 bits), Expect = 8.7e-111, P = 8.7e-111
 Identities = 219/351 (62%), Positives = 259/351 (73%)

Query:    35 NLIHSKRSSHVTTLSLNKNVPPQSAEFSRRHVFLSP-LIAVGASILLQSATASADEXXXX 93
             NL   K +S ++ ++L+ +  P    FSRR   L+P L+   AS+ L+ + + A E    
Sbjct:    38 NLTSEKNNS-LSIVALSDSDLPSRTAFSRRAFLLAPPLLVSAASLFLKPSVSLASEESSS 96

Query:    94 XXXXXXXXXXX----------XNPETVKAEEVVVSRIYDATVIGEPLAVGKDKRKVWEKL 143
                                    P  V  EE + SRIYDAT IGEP+A+GKDK+KVWEKL
Sbjct:    97 ATVTSPAESAAPPPPPATTTPSPPPPVNKEETITSRIYDATAIGEPMAMGKDKKKVWEKL 156

Query:   144 MNARVVYLGEAEQVPVRDDRELELQIVKNLRKRCVESERTITLALEAFPSDLQDQLNQYT 203
             +NARVVYLGEAEQVP +DD+ELEL+IV+NLRKRCVESER I++ALEAFP DLQDQLNQY 
Sbjct:   157 LNARVVYLGEAEQVPTKDDKELELEIVRNLRKRCVESERQISVALEAFPLDLQDQLNQYM 216

Query:   204 DKRIDGETLKSYASHWPPQRWQEYEPLLSYCRDNGVQLLACGTPLKVLRTVQAEGIHGLS 263
             DKR+DGETLKSY +HWP QRWQEYEPLLSYCRDN V+L+ACGTPLKVLRTVQAEGI GLS
Sbjct:   217 DKRMDGETLKSYVTHWPAQRWQEYEPLLSYCRDNSVRLIACGTPLKVLRTVQAEGIRGLS 276

Query:   264 KADRKLYAPPAXXXXXXXXXXXXHRSSVDMNSLTQSVPFGPSSYLSAQARVVEDYAMSQI 323
             K++RKLY PPA             RS+ DM+  TQ VPFGPSSYLSAQARVVED+ MSQ+
Sbjct:   277 KSERKLYTPPAGSGFISGFSSFSRRSTFDMSLPTQIVPFGPSSYLSAQARVVEDHTMSQV 336

Query:   324 ILKAIMDGGANGMLVVVTGASHVTYGSRGTGLPARISKKLQKKNQVVILLD 374
             IL+A+ DGG  G+L+VVTGASHV YGSRGTGLPARIS+K  KKNQVV+LLD
Sbjct:   337 ILQAVADGGGTGLLLVVTGASHVEYGSRGTGLPARISRKFPKKNQVVVLLD 387

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

TAIR|locus:2063136 AT2G40400 [Arabidopsis thaliana (taxid:3702)]

 Score = 1088 (388.1 bits), Expect = 3.8e-110, P = 3.8e-110
 Identities = 211/334 (63%), Positives = 259/334 (77%)

Query:    44 HVTTLSLNK--NVPPQSAEFSRRHVFLSP-LIAVGASILLQSATASADEXXXXXXXXXXX 100
             +V TL L+   NV       +RR + ++P L+A  AS+ L  ++A++ E           
Sbjct:    46 NVVTLCLHSHSNVSSSQIAVTRRAILVAPPLLAAAASLFLSISSAASAETSAESVALPPV 105

Query:   101 XXXXXNPETVKAEEVVVSRIYDATVIGEPLAVGKDKRKVWEKLMNARVVYLGEAEQVPVR 160
                   P  V+ EE + SRIYDA+V+GEP+AVGKDK++VWEKL+NAR+VYLGEAEQVP R
Sbjct:   106 ATAPP-PPPVEKEEAITSRIYDASVLGEPMAVGKDKKRVWEKLLNARIVYLGEAEQVPTR 164

Query:   161 DDRELELQIVKNLRKRCVESERTITLALEAFPSDLQDQLNQYTDKRIDGETLKSYASHWP 220
             DD+ LEL+IV+NLRKRC+ES+R ++LALEAFP DLQ+QLNQY DKR+DGE LKSY SHWP
Sbjct:   165 DDKVLELEIVRNLRKRCIESDRQLSLALEAFPLDLQEQLNQYMDKRMDGEVLKSYVSHWP 224

Query:   221 PQRWQEYEPLLSYCRDNGVQLLACGTPLKVLRTVQAEGIHGLSKADRKLYAPPAXXXXXX 280
              QRWQEYEPLLSYCRDNGV+L+ACGTPLKVLRTVQAEGI GLS+++RKLY PPA      
Sbjct:   225 VQRWQEYEPLLSYCRDNGVKLIACGTPLKVLRTVQAEGIRGLSESERKLYTPPAGSGFIS 284

Query:   281 XXXXXXHRSSVDMNSLTQSVPFGPSSYLSAQARVVEDYAMSQIILKAIMDGGANGMLVVV 340
                     SS++MN LTQ VPFGPSSYLSAQARVVED+ MSQ+I++A+ DGG  GMLVVV
Sbjct:   285 GFTSFSRSSSLNMNPLTQIVPFGPSSYLSAQARVVEDHTMSQVIVQAVADGGGTGMLVVV 344

Query:   341 TGASHVTYGSRGTGLPARISKKLQKKNQVVILLD 374
             TGA+HV YGSRGTGLPARIS+K+ KK+Q+V+LLD
Sbjct:   345 TGANHVEYGSRGTGLPARISRKIPKKSQLVVLLD 378

GO:0009507 "chloroplast" evidence=ISM

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

UNIPROTKB|Q747X6 GSU3139 "Uncharacterized protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 171 (65.3 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 58/248 (23%), Positives = 117/248 (47%)

Query:   134 KDKRKV-WEKLMN----ARVVYLGEAEQVPVRDDRELELQIVKNLRKRCVESERTITLAL 188
             KD++++ +E+++      +V+Y+GE    P   D  L+L+IV+ L +  V     + +A+
Sbjct:    34 KDRKEISFEEMLRDLKAGKVIYVGETHDNPYHHD--LQLRIVRELHRAGVP----LAIAM 87

Query:   189 EAFPSDLQDQLNQYTDKRIDGETLKS-YASHWP-PQRWQEYEPLLSYCRDNGVQLLACGT 246
             E F  + Q++L+++   + D    +  Y  +W  P  W  Y  +L + RD  + L+    
Sbjct:    88 EMFTYESQEELDRWVAGKTDPALFQQIYLKNWNFP--WALYGDILLFARDRRIPLVGLNV 145

Query:   247 PLKVLRTVQAEGIHGLSKADRKLYAPPAXXXXXXXXXXXXHRSSVDMNSLTQSVPFGPSS 306
             P +V R V  +G   LS+ +R+   P               RS  D +  T +  F   +
Sbjct:   146 PREVTRKVARQGFESLSREERRKLPPSITCDVDDAYMAMIRRSYSDHD--TSAKTF--KN 201

Query:   307 YLSAQARVVEDYAMSQIILKAIMDGGANGMLVVVTGASHVTYGSRGTGLPARISKKLQKK 366
             +  AQ  ++ + +M+  +++ + +      +VV+TG+ H   G    G+P ++ ++    
Sbjct:   202 FCEAQ--MLWNKSMAYHLVEYLKNNPGR-TVVVITGSGHAVRG----GMPVQVDREKPGL 254

Query:   367 NQVVILLD 374
                V+L D
Sbjct:   255 ASRVVLPD 262

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_3139 GSU_3139 "conserved hypothetical protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 171 (65.3 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 58/248 (23%), Positives = 117/248 (47%)

Query:   134 KDKRKV-WEKLMN----ARVVYLGEAEQVPVRDDRELELQIVKNLRKRCVESERTITLAL 188
             KD++++ +E+++      +V+Y+GE    P   D  L+L+IV+ L +  V     + +A+
Sbjct:    34 KDRKEISFEEMLRDLKAGKVIYVGETHDNPYHHD--LQLRIVRELHRAGVP----LAIAM 87

Query:   189 EAFPSDLQDQLNQYTDKRIDGETLKS-YASHWP-PQRWQEYEPLLSYCRDNGVQLLACGT 246
             E F  + Q++L+++   + D    +  Y  +W  P  W  Y  +L + RD  + L+    
Sbjct:    88 EMFTYESQEELDRWVAGKTDPALFQQIYLKNWNFP--WALYGDILLFARDRRIPLVGLNV 145

Query:   247 PLKVLRTVQAEGIHGLSKADRKLYAPPAXXXXXXXXXXXXHRSSVDMNSLTQSVPFGPSS 306
             P +V R V  +G   LS+ +R+   P               RS  D +  T +  F   +
Sbjct:   146 PREVTRKVARQGFESLSREERRKLPPSITCDVDDAYMAMIRRSYSDHD--TSAKTF--KN 201

Query:   307 YLSAQARVVEDYAMSQIILKAIMDGGANGMLVVVTGASHVTYGSRGTGLPARISKKLQKK 366
             +  AQ  ++ + +M+  +++ + +      +VV+TG+ H   G    G+P ++ ++    
Sbjct:   202 FCEAQ--MLWNKSMAYHLVEYLKNNPGR-TVVVITGSGHAVRG----GMPVQVDREKPGL 254

Query:   367 NQVVILLD 374
                V+L D
Sbjct:   255 ASRVVLPD 262


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.131   0.375    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      387       359   0.00081  117 3  11 22  0.41    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  219 KB (2121 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  27.69u 0.10s 27.79t   Elapsed:  00:00:01
  Total cpu time:  27.69u 0.10s 27.79t   Elapsed:  00:00:01
  Start:  Fri May 10 18:10:16 2013   End:  Fri May 10 18:10:17 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.VIII.2098.1 hypothetical protein (668 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	387
pfam04187	213	pfam04187, DUF399, Protein of unknown function, DU	2e-42
COG3016	295	COG3016, PhuW, Uncharacterized iron-regulated prot	4e-10

>gnl|CDD|217950 pfam04187, DUF399, Protein of unknown function, DUF399

 Score =  147 bits (373), Expect = 2e-42
 Identities = 64/232 (27%), Positives = 108/232 (46%), Gaps = 25/232 (10%)

Query: 135 DKRKVWEKLMNARVVYLGEAEQVPVRDDRELELQIVKNLRKRCVESERTITLALEAFPSD 194
              ++  +L +A VV LGE    P      L+L +++ L     E+   + LALE F  D
Sbjct: 2   SFEQLLARLADADVVLLGEQHDNP--AHHRLQLWLLRALH----EARPQLALALEMFTRD 55

Query: 195 LQDQLNQYTDKRIDGETLKSYA---SHWPPQRWQEYEPLLSYCRDNGVQLLACGTPLKVL 251
            Q  L+ Y    ID E L         WP   W  Y PL+ + R+  + L+A   P  ++
Sbjct: 56  QQPVLDAYLAGEIDEEELLEALDWQKGWPND-WSLYRPLVEFAREARLPLIAANLPRSIV 114

Query: 252 RTVQAEGIHGLSKADRKLYAPPAGSGFISGFTSISHRSSVDMNSLTQSVPFGPS--SYLS 309
           R V  EG+  L +A+R     PA         S ++R+ +             S  ++++
Sbjct: 115 RAVAREGLESLPEAERARLPLPA------SLPSEAYRALLADIFAGHCGALPESLPAFVA 168

Query: 310 AQARVVEDYAMSQIILKAIMDGGANGMLVVVTGASHVTYGSRGTGLPARISK 361
           AQ   + D  M++ I++A+ + G  G +V++ G  HV    +G G+PAR+++
Sbjct: 169 AQ--QLRDATMAESIVRALAEHG--GPVVLIAGNGHV---RKGLGVPARLAR 213

No function is known for any member of this family. Length = 213

>gnl|CDD|225561 COG3016, PhuW, Uncharacterized iron-regulated protein [Function unknown]

 Score = 59.9 bits (145), Expect = 4e-10
 Identities = 58/232 (25%), Positives = 101/232 (43%), Gaps = 26/232 (11%)

Query: 142 KLMNARVVYLGEAEQVPVRDDRELELQIVKNLRKRCVESERTITLALEAFPSDLQDQLNQ 201
           +L+NA V+ +GE       +  EL+L++ K L     E  R + LA+E F    Q  L++
Sbjct: 56  ELLNADVILVGEKHDNE--EIHELQLKLFKALH----ERYRQVILAMEMFQQPYQPFLDE 109

Query: 202 YTDKRIDGETLKSYASHWP-PQRWQEYEPLLSYCRDNGVQLLACGTPLKVLRTVQAEGIH 260
           + + +ID +     A  W     W++YEPL++Y    G+ +LA   P   +R +   G  
Sbjct: 110 FVEGKIDEKYELLEALRWKKTWSWKDYEPLVNYAERQGIPILAANLPRSEIREIYRRGP- 168

Query: 261 GLSKADRKLYAPPAGSGFISGFTSISHRSSVDMNSLTQSVPFGPSSYLSAQARVVEDYAM 320
                         GS              + ++ L +  P    S+L AQ     D AM
Sbjct: 169 -----------ELVGSVSTPPEIVYPPYREILLSELHRGNPSSNKSFLDAQVTW--DQAM 215

Query: 321 SQIILKAIMDGGANGMLVVVTGASHVTYGSRGTGLPARISKKLQKKNQVVIL 372
           ++ + K ++      +L++  G+ H     +G G+P  + K L    +VV+L
Sbjct: 216 ARRMAKTLILHPDRKVLLIA-GSFHT---YKGLGVPYHL-KDLYPGVKVVVL 262

Length = 295

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	387
PF04187	213	DUF399: Protein of unknown function, DUF399; Inter	100.0
COG3016	295	PhuW Uncharacterized iron-regulated protein [Funct	100.0
TIGR00261	380	traB pheromone shutdown-related protein TraB. traB	95.45
COG2312	405	Erythromycin esterase homolog [General function pr	94.68
COG1916	388	Uncharacterized homolog of PrgY (pheromone shutdow	94.51
PF01963	259	TraB: TraB family; InterPro: IPR002816 In prokaryo	89.26
PF05139	346	Erythro_esteras: Erythromycin esterase; InterPro:	88.56

>PF04187 DUF399: Protein of unknown function, DUF399; InterPro: IPR007314 No function is known for any member of this family

Probab=100.00  E-value=1.1e-56  Score=420.81  Aligned_cols=204  Identities=31%  Similarity=0.572  Sum_probs=145.8

Q ss_pred             HHHHHHHHhcCCEEEEccccCCCCchhHHHHHHHHHHHHhhccccCCCceEEeeccCCCCchhhhhhhcCCCChHHHH--
Q 043788          136 KRKVWEKLMNARVVYLGEAEQVPVRDDRELELQIVKNLRKRCVESERTITLALEAFPSDLQDQLNQYTDKRIDGETLK--  213 (387)
Q Consensus       136 ~~~l~~~La~adVVlLGE~Hdnp~~~hH~lQl~llraL~~r~~e~g~~~aLgLEMF~~d~Q~~LD~ylaG~Ide~~Ll--  213 (387)
                      +++|+++|+++|||||||.||||  +||++|++||++|+++    +++++||||||++++|++||+|++|+||+++|+  
T Consensus         4 ~~~l~~~l~~~~vVllGE~Hdn~--~~H~~Ql~ll~~L~~~----~~~~al~lEmf~~~~Q~~Ld~~~~g~i~e~~l~~~   77 (213)
T PF04187_consen    4 FEQLIKQLANADVVLLGEQHDNP--DHHRLQLELLRALYAQ----RPPLALGLEMFERDQQPALDRYLAGKIDEEELLEQ   77 (213)
T ss_dssp             HHHHHHHHTT-SEEEEEE-TT-H--HHHHHHHHHHHHHHHT----T--EEEEEEEEEGGGHHHHHHHHHTG--TTTHHHH
T ss_pred             HHHHHHHHhCCCEEEECCCCCCH--HHHHHHHHHHHHHHhc----CCCCEEEEecCCccccHHHHHHHhCcccHHHHHHH
Confidence            89999999999999999999999  8999999999999874    669999999999999999999999999999996  


Q ss_pred             -HHhcCCCCCCCcccHHHHHHHHhcCCcEEecCCCHHHHHHHHHhcccCCCHHHHhhcCCCCC---Ccccchhhhhcccc
Q 043788          214 -SYASHWPPQRWQEYEPLLSYCRDNGVQLLACGTPLKVLRTVQAEGIHGLSKADRKLYAPPAG---SGFISGFTSISHRS  289 (387)
Q Consensus       214 -~w~~~W~~~~w~lYrPL~~~Ar~~gipviAlNlPre~vr~V~r~Gl~sLs~eeR~~l~pp~~---~~~~~~~~~~~~~s  289 (387)
                       +|.+.|+| +|++|+|||+|||++++||||+|+|++++++|+++|+++|++++|++|+++.+   ..|...+..++ ..
T Consensus        78 ~~w~~~W~~-~~~~Y~pl~~~Ar~~~ipviA~N~pr~~~~~V~~~G~~~L~~~~r~~l~~~~~~~~~~~~~~~~~~~-~~  155 (213)
T PF04187_consen   78 LDWDRRWPN-DWALYRPLVEFARENGIPVIALNVPRELVRKVAREGLDSLSEEERAWLPPDIPLPDPAYRARLQEIF-AG  155 (213)
T ss_dssp             TT--TTS----GGGTHHHHHHHHTSS--EEEEE--HHHHHHHHT---------T------SSSS-HHHHHHHHHHHH-HH
T ss_pred             hccccCCCC-chHHHHHHHHHHHHCCCCEEEecCCHHHHHHHHHhcccchhhhhHhhcCCCCCCChHHHHHHHHHHH-Hh
Confidence             79999998 59999999999999999999999999999999999999999999999986443   23334443333 22


Q ss_pred             cccccccCCCCCCCCcchHHHHhhhhhhHHHHHHHHHHHHhcCCCCeEEEEeCCCccccCCCCcchhhHHhh
Q 043788          290 SVDMNSLTQSVPFGPSSYLSAQARVVEDYAMSQIILKAIMDGGANGMLVVVTGASHVTYGSRGTGLPARISK  361 (387)
Q Consensus       290 ~~~~~~~~~~~~~~~~~f~~aQAq~l~D~tMAe~I~~al~~~~p~~~vVvIaG~gHv~~g~r~~GVP~rL~r  361 (387)
                      +|.+.      +...++|+++|  ++||++||++|++++  + ++++||+|+|+||+++|   +|||.||+|
T Consensus       156 h~~~~------~~~~~~~~~aQ--~~~D~~MA~~i~~~~--~-~~~~vv~i~G~gH~~~~---~Gvp~~L~r  213 (213)
T PF04187_consen  156 HCGML------PESLERFYEAQ--QLWDATMAESIAAAL--H-PGRPVVVIAGNGHVRKG---LGVPARLAR  213 (213)
T ss_dssp             HT--T------TTTHHHHHHHH--HHHHHHHHHHHHH-S------SEEEEEEEHHHH-TT---TSHHHHHHH
T ss_pred             ccCCC------chhHHHHHHHH--HHHHHHHHHHHHHHH--h-ccCeEEEEeCcchhcCC---CchhHHhcC
Confidence            44432      22357899888  999999999999998  3 58899999999999977   999999975

; PDB: 2G5G_X.

>COG3016 PhuW Uncharacterized iron-regulated protein [Function unknown]

Probab=100.00  E-value=6.8e-45  Score=344.41  Aligned_cols=234  Identities=25%  Similarity=0.423  Sum_probs=194.2

Q ss_pred             ccccccceeeEEeecccCCcccccCcCHHHHHHHHhcCCEEEEccccCCCCchhHHHHHHHHHHHHhhccccCCCceEEe
Q 043788          109 TVKAEEVVVSRIYDATVIGEPLAVGKDKRKVWEKLMNARVVYLGEAEQVPVRDDRELELQIVKNLRKRCVESERTITLAL  188 (387)
Q Consensus       109 ~~~~~~~~~~rI~D~~~~G~~is~~~~~~~l~~~La~adVVlLGE~Hdnp~~~hH~lQl~llraL~~r~~e~g~~~aLgL  188 (387)
                      ....+.+..++|.+..| |+.+|    +++|+.+|.+||||||||.|||+  +||.+|++|+++|.+    .+++.+|+|
T Consensus        28 l~g~~d~~~~yil~t~t-g~~iS----~q~LiaeL~nadvIlvGEkHdn~--~~h~~Ql~l~kal~e----~~~q~iLam   96 (295)
T COG3016          28 LLGCSDTFYDYILATPT-GEEIS----FQALIAELLNADVILVGEKHDNE--EIHELQLKLFKALHE----RYRQVILAM   96 (295)
T ss_pred             cccCCccccceeeecCc-Cceec----HHHHHHHHhcCCEEEEecccCch--hHHHHHHHHHHHHHH----hcccceehH
Confidence            34556668899999997 99998    99999999999999999999999  899999999999997    477899999


Q ss_pred             eccCCCCchhhhhhhcCCCChH-HHH---HHhcCCCCCCCcccHHHHHHHHhcCCcEEecCCCHHHHHHHHHhcccC---
Q 043788          189 EAFPSDLQDQLNQYTDKRIDGE-TLK---SYASHWPPQRWQEYEPLLSYCRDNGVQLLACGTPLKVLRTVQAEGIHG---  261 (387)
Q Consensus       189 EMF~~d~Q~~LD~ylaG~Ide~-~Ll---~w~~~W~~~~w~lYrPL~~~Ar~~gipviAlNlPre~vr~V~r~Gl~s---  261 (387)
                      |||+++.|+.||+|+.|+|+++ ++.   .|.+.|.   |.+|+||++||...++||+|+|++|+.++.|.|+|.+-   
T Consensus        97 Emf~~~~Qp~lD~~~~gk~~~k~el~eAl~w~k~w~---wkdY~plvn~a~~q~~pilaaNl~rseI~~iyr~~p~l~g~  173 (295)
T COG3016          97 EMFQQPYQPFLDEFVEGKIDEKYELLEALRWKKTWS---WKDYEPLVNYAERQGIPILAANLPRSEIREIYRRGPELVGS  173 (295)
T ss_pred             HhhCcccchhHHHHHhccccHHHHHHHHhccccccc---HhHHHHHHHHHHhcCCceeeecCCHHHHHHHHhcCCCCCCc
Confidence            9999999999999999999998 453   7998898   99999999999999999999999999999999998642   


Q ss_pred             --CCHHHHhhcCCCCCCcccchhhhhcccccccccccCCCCCCCCcchHHHHhhhhhhHHHHHHHHHHHHhcCCCCeEEE
Q 043788          262 --LSKADRKLYAPPAGSGFISGFTSISHRSSVDMNSLTQSVPFGPSSYLSAQARVVEDYAMSQIILKAIMDGGANGMLVV  339 (387)
Q Consensus       262 --Ls~eeR~~l~pp~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~f~~aQAq~l~D~tMAe~I~~al~~~~p~~~vVv  339 (387)
                        ++++.+.       ..|..-+.+.+   +|++       +...++|+.+|  +.||.+||++|++.|..| |+++|++
T Consensus       174 vst~~ei~~-------p~y~~i~ls~~---H~gn-------p~~nk~~l~aq--vt~dq~marrma~~L~~~-p~rkvll  233 (295)
T COG3016         174 VSTPPEIVY-------PPYREILLSEL---HRGN-------PSSNKSFLDAQ--VTWDQAMARRMAKTLILH-PDRKVLL  233 (295)
T ss_pred             ccCCccccc-------chHHHHHHHHH---hcCC-------cchhhhHHHHH--HHHHHHHHHHHHHHHHhC-CCcceEE
Confidence              3222221       11333333222   2332       22346799999  999999999999999876 8899999


Q ss_pred             EeCCCccccCCCCcchhhHHhhhcCCCceEEEEeCCCCccccc
Q 043788          340 VTGASHVTYGSRGTGLPARISKKLQKKNQVVILLDLKGNIFEE  382 (387)
Q Consensus       340 IaG~gHv~~g~r~~GVP~rL~r~~P~~~~~vVll~p~~~~i~~  382 (387)
                      |+|+||..   |++|||.+|+++.|++++++  +.|+| .|+.
T Consensus       234 iAGsfHt~---kglGvp~hl~dl~~g~kvv~--L~~~g-ei~~  270 (295)
T COG3016         234 IAGSFHTY---KGLGVPYHLKDLYPGVKVVV--LYPEG-EIEK  270 (295)
T ss_pred             Eeccchhh---ccCCcceeHHhhCCCcEEEE--Eeecc-cccc
Confidence            99999999   56999999999998766554  45555 4443

>TIGR00261 traB pheromone shutdown-related protein TraB

Probab=95.45  E-value=0.23  Score=51.37  Aligned_cols=191  Identities=12%  Similarity=0.126  Sum_probs=101.3

Q ss_pred             hcCCEEEEccccCCCCchhHHHHHHHHHHHHhhccccCCCceEEeeccCCCCchhhhhhhcCCCChHHHH----------
Q 043788          144 MNARVVYLGEAEQVPVRDDRELELQIVKNLRKRCVESERTITLALEAFPSDLQDQLNQYTDKRIDGETLK----------  213 (387)
Q Consensus       144 a~adVVlLGE~Hdnp~~~hH~lQl~llraL~~r~~e~g~~~aLgLEMF~~d~Q~~LD~ylaG~Ide~~Ll----------  213 (387)
                      .+.+|.++|=.|-..     .-..+|=+.+.+     .++=+|++|--+..+|..++. ...++|-.+.+          
T Consensus         2 ~~~~i~lvGTAHvS~-----~S~~eV~~~I~~-----~~PD~VaVELd~~R~~~l~~~-~~~~~di~~vlk~g~~~~~l~   70 (380)
T TIGR00261         2 HEKTIYILGTAHVSK-----KSSEEVANLIEI-----LKPDYIAVELDERRYHSLLNT-KWRNLDIDKVLKQGNAFFLII   70 (380)
T ss_pred             CCcEEEEEecccCCH-----HHHHHHHHHHHH-----hCCCEEEEeCCHHHHHHHhhh-hhccCCHHHHhhcCchHHHHH
Confidence            367899999999755     122233333332     457799999988888888776 22334433321          


Q ss_pred             ----HH-h----cCCCCCCCcccHHHHHHHHhcCCcEEecCCCHHHHHHHHHhcccCCCHHHHhhcCC----CCCCcccc
Q 043788          214 ----SY-A----SHWPPQRWQEYEPLLSYCRDNGVQLLACGTPLKVLRTVQAEGIHGLSKADRKLYAP----PAGSGFIS  280 (387)
Q Consensus       214 ----~w-~----~~W~~~~w~lYrPL~~~Ar~~gipviAlNlPre~vr~V~r~Gl~sLs~eeR~~l~p----p~~~~~~~  280 (387)
                          .| +    +..+-.+=+..+-=++.|++.|+||+=+..|-.++-+=.   +.+++--+|-.+.-    .......+
T Consensus        71 ~~~La~~q~~l~~~~gi~PG~Em~~Ai~~A~e~g~~v~LiDRdI~iTl~R~---w~~~~~~eK~kl~~~l~~~~~~~~e~  147 (380)
T TIGR00261        71 NLILANFQKKLGEEQGIKPGSEMKTAIEKAKKHGIPLILIDRDIETTLKRA---WISITFFEKAKIISSLFSSTDAKIED  147 (380)
T ss_pred             HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCcEEEeCCCHhHHHHHH---HHhCCHHHHHHHHHHHHhccccCCHH
Confidence                11 1    112222224566679999999999999988877654211   22222222222210    00000000


Q ss_pred             hhhhhcccc-cccccccC-CCCCCCCcchHHHHhhhhhhHHHHHHHHHHHHhcCCCCeEEEEeCCCccccCCCCcchhhH
Q 043788          281 GFTSISHRS-SVDMNSLT-QSVPFGPSSYLSAQARVVEDYAMSQIILKAIMDGGANGMLVVVTGASHVTYGSRGTGLPAR  358 (387)
Q Consensus       281 ~~~~~~~~s-~~~~~~~~-~~~~~~~~~f~~aQAq~l~D~tMAe~I~~al~~~~p~~~vVvIaG~gHv~~g~r~~GVP~r  358 (387)
                      .+.+...+. ...++... +..|...+.++     -=||..||++|.+...   .++++|+++|+||..      ||-..
T Consensus       148 ~ie~l~~~d~L~~~~~e~~~~~P~l~~~LI-----dERD~ymA~~L~~l~~---~~~~VvaVVGAGHl~------GI~~~  213 (380)
T TIGR00261       148 EIEKLLEQDALSKIMKELSKISPKVKKVLI-----DERDEFMANKLLEGEG---NKNIIVAVVGAGHVS------GIMRT  213 (380)
T ss_pred             HHHHhhhhhHHHHHHHHHhhhCCchhhHHH-----HHHHHHHHHHHHHhhc---CCCcEEEEECcchhh------hHHHH
Confidence            110000000 00000000 01121112233     2499999999987642   345799999999999      99877


Q ss_pred             Hhhh
Q 043788          359 ISKK  362 (387)
Q Consensus       359 L~r~  362 (387)
                      +...
T Consensus       214 l~~~  217 (380)
T TIGR00261       214 LKKL  217 (380)
T ss_pred             HhCc
Confidence            7654

traB is a plasmid encoded gene that functions in the shutdown of the peptide sex pheromone cPD1 which is produced by the plasmid free recipient cell prior to conjugative transfer in Enterococcus faecalis. Once the recipient acquires the plasmid, production of cPD1 is shut down. The gene product may play another role in the other species in the family.

>COG2312 Erythromycin esterase homolog [General function prediction only]

Probab=94.68  E-value=0.088  Score=54.55  Aligned_cols=94  Identities=21%  Similarity=0.224  Sum_probs=67.8

Q ss_pred             CHHHHHHHHhcCCEEEEccc-cCCCCchhHHHHHHHHHHHHhhccccCCCceEEeeccCCCCchhhhhhhcCC-CChHHH
Q 043788          135 DKRKVWEKLMNARVVYLGEA-EQVPVRDDRELELQIVKNLRKRCVESERTITLALEAFPSDLQDQLNQYTDKR-IDGETL  212 (387)
Q Consensus       135 ~~~~l~~~La~adVVlLGE~-Hdnp~~~hH~lQl~llraL~~r~~e~g~~~aLgLEMF~~d~Q~~LD~ylaG~-Ide~~L  212 (387)
                      +.+.+.+.|.+++||+|||. |...  ++-+.-..++|.|.+.|   |- -+|+||-=-.|.| .+|+|+.|. -|..+.
T Consensus        34 ~~~~l~~~l~~~RiV~LGE~sHGt~--e~~~~k~rm~r~Lvee~---Gf-~~iA~EA~~~d~~-av~~Yv~~~~~d~~~~  106 (405)
T COG2312          34 ALEALATLLTDARIVLLGEPSHGTG--EFFAFKARMFRALVEEL---GF-RAIAFEADFPDAQ-AVNRYVRGGGDDLREA  106 (405)
T ss_pred             hHHHHHhhccCCeEEEecCCCCCcc--HHHHHHHHHHHHHHHHh---Cc-ceEEeccCcHHHH-HHHHHHhccCCChHHH
Confidence            37899999999999999995 5432  45566678999999854   33 4899998555554 679999866 344443


Q ss_pred             HH--HhcCCCCCCCcccHHHHHHHHhcC
Q 043788          213 KS--YASHWPPQRWQEYEPLLSYCRDNG  238 (387)
Q Consensus       213 l~--w~~~W~~~~w~lYrPL~~~Ar~~g  238 (387)
                      ..  ...-|.+   +.-++||++-|+.+
T Consensus       107 ~~~~~~~~Wr~---~~v~~lv~wlr~~n  131 (405)
T COG2312         107 MDGFIFWVWRR---AEVRDLVEWLREFN  131 (405)
T ss_pred             HhccchhhhhH---HHHHHHHHHHHHHh
Confidence            32  2224774   58999999988764

>COG1916 Uncharacterized homolog of PrgY (pheromone shutdown protein) [Function unknown]

Probab=94.51  E-value=0.33  Score=49.88  Aligned_cols=186  Identities=17%  Similarity=0.167  Sum_probs=101.9

Q ss_pred             HhcCCEEEEccccCCCCchhHHHHHHHHHHHHhhccccCCCceEEeeccCCCCchhhhhhhcCCCChHHHH---------
Q 043788          143 LMNARVVYLGEAEQVPVRDDRELELQIVKNLRKRCVESERTITLALEAFPSDLQDQLNQYTDKRIDGETLK---------  213 (387)
Q Consensus       143 La~adVVlLGE~Hdnp~~~hH~lQl~llraL~~r~~e~g~~~aLgLEMF~~d~Q~~LD~ylaG~Ide~~Ll---------  213 (387)
                      ....+|+++|-.|-...  .-   .++=+.+..     ..+=+|+.|.-+...|..|+.-.. ++|-.+.+         
T Consensus         9 ~~~~~v~iiGTAHVS~~--Sv---eeVrr~I~~-----~~PDaVAVELd~~R~~sLl~~~~~-~ldl~~vlk~Gk~~~~l   77 (388)
T COG1916           9 FEEKEVYILGTAHVSKD--SV---EEVRRIILE-----EKPDAVAVELDEARLLSLLGGSRE-ELDLAQVLKEGKAFFLL   77 (388)
T ss_pred             cccceEEEEeeeecCHh--HH---HHHHHHHHh-----cCCCeEEEEecHHHHHHHhcCCcc-cCCHHHHHHcCchHHHH
Confidence            34458999999997652  11   222233332     346799999999888888875432 44443321         


Q ss_pred             -----HH-hcC----CCCCCCcccHHHHHHHHhcCCcEEecCCCHHHHHHHHHhcccCCCHHHHhhcC--------CCCC
Q 043788          214 -----SY-ASH----WPPQRWQEYEPLLSYCRDNGVQLLACGTPLKVLRTVQAEGIHGLSKADRKLYA--------PPAG  275 (387)
Q Consensus       214 -----~w-~~~----W~~~~w~lYrPL~~~Ar~~gipviAlNlPre~vr~V~r~Gl~sLs~eeR~~l~--------pp~~  275 (387)
                           .+ ++.    -+-.+=++-.--++.|++.|+||+=..-+=+++-+=   =+..++.-|+-++.        -+..
T Consensus        78 ~~~lLa~~Qrklg~~~Gv~PGsEmk~AIe~A~e~ga~V~lIDRdI~vTl~R---~~~~~~~~EKlK~~~~L~~~~~~~g~  154 (388)
T COG1916          78 AGLLLAYFQRKLGKELGVKPGSEMKAAIEAARELGAPVALIDRDIGVTLRR---AWAKMPFWEKLKLISSLISGLLFPGQ  154 (388)
T ss_pred             HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCEEEecccHHHHHHH---HHHhCCHHHHHHHHHHHHHhcccCCC
Confidence                 11 111    111122578888999999999999988776654322   12234443433331        1100


Q ss_pred             Ccc-cchhhhhcccccccccccC-CC-CCCCCcchH--HHHhhhhhhHHHHHHHHHHHHhcCCCCeEEEEeCCCccccCC
Q 043788          276 SGF-ISGFTSISHRSSVDMNSLT-QS-VPFGPSSYL--SAQARVVEDYAMSQIILKAIMDGGANGMLVVVTGASHVTYGS  350 (387)
Q Consensus       276 ~~~-~~~~~~~~~~s~~~~~~~~-~~-~~~~~~~f~--~aQAq~l~D~tMAe~I~~al~~~~p~~~vVvIaG~gHv~~g~  350 (387)
                      .+. ...+.      ..|+.... +. ..+. +..+  .+-   =||+.||.+|.+.....   -.+|.|.|+||..   
T Consensus       155 ~e~ei~~l~------~~D~~~al~~efr~~~-P~~~~vLID---ERd~ymA~nll~~~~~~---~~vvAVVGAGH~~---  218 (388)
T COG1916         155 SEIEIDELK------QEDVLSALMQEFRRFS-PTVYKVLID---ERDRYMARNLLEIVSIL---NDVVAVVGAGHVR---  218 (388)
T ss_pred             chHHHHHHh------hhhHHHHHHHHHHHhC-hhHHHHHHH---HHHHHHHHHHHHHHccc---CcEEEEEccccHH---
Confidence            000 00000      00111000 00 0000 1222  111   29999999999987543   2399999999999   


Q ss_pred             CCcchhhHHhh
Q 043788          351 RGTGLPARISK  361 (387)
Q Consensus       351 r~~GVP~rL~r  361 (387)
                         ||-.+|..
T Consensus       219 ---GI~~~L~~  226 (388)
T COG1916         219 ---GIERYLKN  226 (388)
T ss_pred             ---HHHHHHhc
Confidence               99999955

>PF01963 TraB: TraB family; InterPro: IPR002816 In prokaryotes, for example Enterococcus faecalis (Streptococcus faecalis), the conjugative transfer of certain plasmids is controlled by peptide pheromones []

Probab=89.26  E-value=0.47  Score=44.78  Aligned_cols=41  Identities=24%  Similarity=0.370  Sum_probs=34.7

Q ss_pred             hhHHHHHHHHHHHHhcCCCCeEEEEeCCCccccCCCCcchhhHHhhh
Q 043788          316 EDYAMSQIILKAIMDGGANGMLVVVTGASHVTYGSRGTGLPARISKK  362 (387)
Q Consensus       316 ~D~tMAe~I~~al~~~~p~~~vVvIaG~gHv~~g~r~~GVP~rL~r~  362 (387)
                      ||..|+..|.+.+..   ++++++++|+||..-   .-||...|+++
T Consensus       212 RN~~~~~~i~~~l~~---~~~~fvvVGa~HL~G---~~gvl~lLr~~  252 (259)
T PF01963_consen  212 RNRRWAEKIEELLKE---GGTVFVVVGAGHLPG---EDGVLDLLRKK  252 (259)
T ss_pred             HhHHHHHHHHHHHhc---CCCEEEEEcchhccc---hhhHHHHHHhC
Confidence            999999999998863   246999999999994   48999999764

Plasmid free recipient cells secret plasmid specific oligopeptides, termed sex pheromones. They induce bacterial clumping and specifically activate the conjugative transfer of the corresponding plasmid. Once recipient cells acquire the plasmid they start to produce a pheromone inhibitor to block the activity of the pheromone and to prevent plasmid containing cells from clumping; they also become donor cells able to transfer the plasmid to plasmid free recipient cells. Examples of such plasmid-pheromone systems are bacteriocin plasmid pPD1 [], haemolysin/bacteriocin plasmid, pAD1 [], tetracycline-resistance plasmid, pCF10 [], and the haemolysin/bacteriocin plasmid, pOB1 []. TraB in combination with another factor contributes to pheromone shutdown in cells that have acquired a plasmid. It exact function has not yet been determined [, ]. This entry also contains plant and mammalian proteins, suggesting that these Trab-related proteins may have a somewhat wider or different function in eukaryotes.

>PF05139 Erythro_esteras: Erythromycin esterase; InterPro: IPR007815 This family includes erythromycin esterase enzymes [, ] that confer resistance to the erythromycin antibiotic

Probab=88.56  E-value=0.53  Score=46.94  Aligned_cols=58  Identities=10%  Similarity=0.107  Sum_probs=41.5

Q ss_pred             hhhhHHHHHHHHHHHHhcCCCCeEEEEeCCCccccCCCCc-------chhhHHhhhcCCCceEEEE
Q 043788          314 VVEDYAMSQIILKAIMDGGANGMLVVVTGASHVTYGSRGT-------GLPARISKKLQKKNQVVIL  372 (387)
Q Consensus       314 ~l~D~tMAe~I~~al~~~~p~~~vVvIaG~gHv~~g~r~~-------GVP~rL~r~~P~~~~~vVl  372 (387)
                      .+||..||+++.-.+...+|+.++||.+.++|+......+       .+=.+|+++.++ +..+|-
T Consensus       183 ~~RD~~MAenl~wl~~~~~~~~KiivwaHN~Hi~k~~~~~~~~~~~~~~G~~L~~~~g~-~y~~Ig  247 (346)
T PF05139_consen  183 NYRDRYMAENLEWLLEHEGPDEKIIVWAHNGHIAKAPSTWMGDLGEKSMGQYLKERYGD-DYYSIG  247 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHH---SSEEEEEEHHHHSSS-STTTT---SS-HHHHHHHHHGG-GEEEEE
T ss_pred             hhhHHHHHHHHHHHHHhhcccccEEEEccchhhcccccccccccCcccHHHHHHHHhCC-cEEEEE
Confidence            4699999999977766555778999999999999763322       256788888884 466663

; GO: 0046677 response to antibiotic; PDB: 2QGM_A 3B55_A 2RAD_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	387
2g5g_X	268	Putative lipoprotein; cofacial heme, tyrosine liga	2e-35
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>2g5g_X Putative lipoprotein; cofacial heme, tyrosine ligand, dimer, transport protein; HET: HEM; 1.90A {Campylobacter jejuni subsp} SCOP: c.150.1.1 Length = 268

 Score =  129 bits (326), Expect = 2e-35
 Identities = 42/292 (14%), Positives = 95/292 (32%), Gaps = 47/292 (16%)

Query: 85  ASADETQPSPPAQPTTSPVPQNPETVKAEEVVVSRIYDATVIGEPLAVGKDKRKVWEKLM 144
             A   + SP  +                      I D T   + ++       +  +L+
Sbjct: 3   HMAVLQKSSPLQENKDF-----------------YILD-THTQKKISFED----MILELL 40

Query: 145 NARVVYLGEAEQVPVRDDRELELQIVKNLRKRCVESERTITLALEAFPSDLQDQLNQYTD 204
            A V+ LGE         +  ++ I   L            +ALE   S  Q+ L++   
Sbjct: 41  KADVILLGEKHDEV--KHKISQVMIFNALEGNLSSQNINFDVALEMLASTEQNHLDKAFK 98

Query: 205 KRIDGETLK-SYASHWPPQ-RWQEYEPLLSYCRDNGVQLLACGTPLKVLRTVQAEGIHGL 262
            +   +  + + A +W    +W++YE  ++    +  ++L        + ++        
Sbjct: 99  NKKTIKANELTNALNWDKVWKWKDYEQFVNVVFYSKSKILGANLSRSEITSIYNGAQPLK 158

Query: 263 SKADRKLYAPPAGSGFISGFTSISHRSSVDMNSLTQSVPFGPSSYLSAQARVVEDYAMSQ 322
                           +    S+SH+ + + N                + +  +D  M+ 
Sbjct: 159 GYVS----TTNEVKKQLFDIISLSHKLNPEENK-ELLDKL-------VEIQQFKDRRMAD 206

Query: 323 IILKAIMDGGANGMLVVVTGASHVTYGSRGTGLPARISKKLQKKNQVVILLD 374
           +++  +        ++++ G+ H    S+  G+P  I      K  VV+ L 
Sbjct: 207 VLVHHV------NKVLLLAGSYHT---SKKIGIPLHIQDFKSSKKIVVVNLS 249

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 9e-04
 Identities = 58/393 (14%), Positives = 109/393 (27%), Gaps = 129/393 (32%)

Query: 45  VTTLSLNKNVPPQSAEFSRRHVFLSPLIAV-----GASILLQSATASADETQPSPPAQPT 99
           +TT    K V    +  +  H+ L             S+LL+       +    P    T
Sbjct: 270 LTTR--FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD---LPREVLT 324

Query: 100 TSPVPQNPETVKAEEVVVSRIYDATVIGEPLAVGKDKRKVW-----EKLMNAR---VVYL 151
           T+P              +S      +I E +  G      W     +KL       +  L
Sbjct: 325 TNPR------------RLS------IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366

Query: 152 GEAEQ-------------VPV----------RDDRELELQIVKNLRKRCV----ESERTI 184
             AE                +             +   + +V  L K  +      E TI
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426

Query: 185 TLALEAFPSDLQDQLNQYTDKRIDGETLKSYASHWPPQRW-QEYEPLLSYCRDNGVQLLA 243
           ++        +  +L    +          YA H   +     Y    ++  D+ +    
Sbjct: 427 SI------PSIYLELKVKLENE--------YALH---RSIVDHYNIPKTFDSDDLIPPYL 469

Query: 244 CGTPLKVLRTVQAEGIHGLSKAD--------RKLYAPPAGSGFISG---FTSISHRSSVD 292
                  +      G H L   +        R ++       F+       S +  +S  
Sbjct: 470 DQYFYSHI------GHH-LKNIEHPERMTLFRMVF---LDFRFLEQKIRHDSTAWNASGS 519

Query: 293 MNSLTQSVPFGPSSYLSAQARVVEDYAMSQIILKAIMDGGANGMLVVVTGASHVTYGSRG 352
           + +  Q + F    Y   +  + ++    + ++ AI+D         +         S+ 
Sbjct: 520 ILNTLQQLKF----Y---KPYICDNDPKYERLVNAILD--------FLPKIEENLICSKY 564

Query: 353 TGLPARISKKLQKKNQVVILLDLKGNIFEEREK 385
           T L       L+     + L+     IFEE  K
Sbjct: 565 TDL-------LR-----IALMAEDEAIFEEAHK 585

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	387
2g5g_X	268	Putative lipoprotein; cofacial heme, tyrosine liga	100.0
2qgm_A	445	Succinoglycan biosynthesis protein; Q817Z0, NESG,	99.4
3b55_A	451	Succinoglycan biosynthesis protein; Q81BN2, NESG,	98.8
2ebf_X	746	Dermonecrotic toxin; pasteurella multocida toxin,	96.81

>2g5g_X Putative lipoprotein; cofacial heme, tyrosine ligand, dimer, transport protein; HET: HEM; 1.90A {Campylobacter jejuni subsp} SCOP: c.150.1.1

Probab=100.00  E-value=3.2e-55  Score=422.79  Aligned_cols=226  Identities=17%  Similarity=0.236  Sum_probs=193.2

Q ss_pred             ceeeEEeecccCCcccccCcCHHHHHHHHhcCCEEEEccccCCCCchhHHHHHHHHHHHHhhccccCCCceEEeeccCCC
Q 043788          115 VVVSRIYDATVIGEPLAVGKDKRKVWEKLMNARVVYLGEAEQVPVRDDRELELQIVKNLRKRCVESERTITLALEAFPSD  194 (387)
Q Consensus       115 ~~~~rI~D~~~~G~~is~~~~~~~l~~~La~adVVlLGE~Hdnp~~~hH~lQl~llraL~~r~~e~g~~~aLgLEMF~~d  194 (387)
                      ...|+|||..+ |++++    +++|+++|+++|||||||.||||  +||.+|++||++|+++|.+++++++|+||||+++
T Consensus        16 ~~~~~i~d~~~-g~~~s----~~~l~~~l~~advVllGE~Hdnp--~hh~~Q~~li~~L~~~l~~~~~~~al~lEMf~~~   88 (268)
T 2g5g_X           16 NKDFYILDTHT-QKKIS----FEDMILELLKADVILLGEKHDEV--KHKISQVMIFNALEGNLSSQNINFDVALEMLAST   88 (268)
T ss_dssp             TTTEEEEETTT-TEECC----HHHHHHHHTTCSEEEEEECTTCH--HHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEGG
T ss_pred             CcceEEEECCC-CCCCC----HHHHHHHhhcCCEEEECCCCCCH--HHHHHHHHHHHHHHHHHhhcCCCCEEEEECCCcc
Confidence            35699999554 99997    99999999999999999999999  8999999999999977766889999999999999


Q ss_pred             CchhhhhhhcC--CCChHHHH---HHhcCCCCCCCcccHHHHHHHHhcCCcEEecCCCHHHHHHHHHhc-----ccCCCH
Q 043788          195 LQDQLNQYTDK--RIDGETLK---SYASHWPPQRWQEYEPLLSYCRDNGVQLLACGTPLKVLRTVQAEG-----IHGLSK  264 (387)
Q Consensus       195 ~Q~~LD~ylaG--~Ide~~Ll---~w~~~W~~~~w~lYrPL~~~Ar~~gipviAlNlPre~vr~V~r~G-----l~sLs~  264 (387)
                      +|+.||+|++|  +||+++|.   .|.++|+   |++|+|||+|||++++||||+|+||+++++|+++|     +++|++
T Consensus        89 ~Q~~Ld~y~~g~~~i~e~~l~~~~~W~~~W~---~~~Y~Plv~~A~~~~ipviA~N~pr~~~r~v~~~g~p~~gl~~l~~  165 (268)
T 2g5g_X           89 EQNHLDKAFKNKKTIKANELTNALNWDKVWK---WKDYEQFVNVVFYSKSKILGANLSRSEITSIYNGAQPLKGYVSTTN  165 (268)
T ss_dssp             GHHHHHHHHHTGGGCCTTTHHHHTTCCTTSC---GGGTHHHHHHHHTSSCCEEEEECCHHHHHHHHTTCCCCCCSSSSCH
T ss_pred             ccHHHHHHHcCCCCCCHHHHHHHhCCCCCCC---HHHHHHHHHHHHHCCCCEEEeCCCHHHHHHHHhcCCCcccccCCCH
Confidence            99999999998  89999996   5877886   89999999999999999999999999999999985     567889


Q ss_pred             HHHhhcCCCCCCcccchhhhhcccccccccccCCCCCCCCcchHHHHhhhhhhHHHHHHHHHHHHhcCCCCeEEEEeCCC
Q 043788          265 ADRKLYAPPAGSGFISGFTSISHRSSVDMNSLTQSVPFGPSSYLSAQARVVEDYAMSQIILKAIMDGGANGMLVVVTGAS  344 (387)
Q Consensus       265 eeR~~l~pp~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~f~~aQAq~l~D~tMAe~I~~al~~~~p~~~vVvIaG~g  344 (387)
                      ++|+++.+.        +.    ..||. ....  .+..+++|+.+|  ++||++||++|++      ++++||||+|+|
T Consensus       166 ~~r~~l~~~--------~~----~~H~~-~~~~--~~~~~~~~~~aQ--~lrD~~MA~~i~~------~~~~vv~iaG~g  222 (268)
T 2g5g_X          166 EVKKQLFDI--------IS----LSHKL-NPEE--NKELLDKLVEIQ--QFKDRRMADVLVH------HVNKVLLLAGSY  222 (268)
T ss_dssp             HHHHHHHHH--------HH----HHHTC-CTTT--THHHHHHHHHHH--HHHHHHHHHHHHH------CSSEEEEEEEHH
T ss_pred             HHHHHHHHH--------HH----hccCC-CCCC--ChHHHHHHHHHH--HHHHHHHHHHHHh------CCCeEEEEeCcc
Confidence            999987431        11    12331 1100  011346899888  9999999999975      346899999999


Q ss_pred             ccccCCCCcchhhHHhhhcCCCceEEEEeCCC
Q 043788          345 HVTYGSRGTGLPARISKKLQKKNQVVILLDLK  376 (387)
Q Consensus       345 Hv~~g~r~~GVP~rL~r~~P~~~~~vVll~p~  376 (387)
                      |+++|   +|||.||+++.|+++++||++...
T Consensus       223 H~~~~---~Gvp~~l~~~~p~~~~~vi~~~~~  251 (268)
T 2g5g_X          223 HTSKK---IGIPLHIQDFKSSKKIVVVNLSYG  251 (268)
T ss_dssp             HHCTT---TSHHHHHHHTTCCSCEEEEEECCS
T ss_pred             hhcCC---CcHHHHHHHhCCCCceEEEEccCC
Confidence            99976   999999999999999999988653

>2qgm_A Succinoglycan biosynthesis protein; Q817Z0, NESG, X-RAY, BCR136, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus cereus atcc 14579} SCOP: c.150.1.3

Probab=99.40  E-value=2.6e-13  Score=138.92  Aligned_cols=103  Identities=18%  Similarity=0.228  Sum_probs=86.8

Q ss_pred             CHHHHHHHHhcCCEEEEcc-ccCCCCchhHHHHHHHHHHHHhhccccCCCceEEeeccCCCCchhhhhhhcCCC-ChHHH
Q 043788          135 DKRKVWEKLMNARVVYLGE-AEQVPVRDDRELELQIVKNLRKRCVESERTITLALEAFPSDLQDQLNQYTDKRI-DGETL  212 (387)
Q Consensus       135 ~~~~l~~~La~adVVlLGE-~Hdnp~~~hH~lQl~llraL~~r~~e~g~~~aLgLEMF~~d~Q~~LD~ylaG~I-de~~L  212 (387)
                      |++.|.+.+.+++||+||| .|++.  +.|+++.+|++.|.+++    .--+|+||++- ..|..||+|+.|.. +.+.|
T Consensus        63 dl~~L~~~~~~ariV~lGEatHG~~--e~~~~r~~l~r~Lve~~----gf~~va~E~~~-~~~~~vd~yv~g~~~~~~~~  135 (445)
T 2qgm_A           63 DLKPLKKMIGNAQYVGLGENTHGSS--EIFTMKFRLVKYLVTEM----GFTNFAMEEDW-GNGLKLNEYIQTGKGNPREF  135 (445)
T ss_dssp             GGHHHHHHHTTCSEEEECCSSSCBH--HHHHHHHHHHHHHHHHH----CCCEEEEEEEH-HHHHHHHHHHHHCCSCGGGT
T ss_pred             hHHHHHHhhcCCCEEEEcCCCCCch--HHHHHHHHHHHHHHHhc----CCeEEEEecCh-HHHHHHHHHHhcCCCCHHHH
Confidence            6999999999999999999 99987  89999999999999853    35699999987 68899999998764 44555


Q ss_pred             HHHhcCCCCCCCcccHHHHHHHHh--------cCCcEEecCCCHH
Q 043788          213 KSYASHWPPQRWQEYEPLLSYCRD--------NGVQLLACGTPLK  249 (387)
Q Consensus       213 l~w~~~W~~~~w~lYrPL~~~Ar~--------~gipviAlNlPre  249 (387)
                      ..|  .|.   ++.|+++|++.|+        .+++++|+++|.+
T Consensus       136 ~~~--~w~---~~e~~~lv~wlR~~N~~~p~~~~v~f~G~D~p~s  175 (445)
T 2qgm_A          136 LKL--LYP---TDEIIAMIEWMKDYNADPSNKKKIQFIGLDLKAL  175 (445)
T ss_dssp             SCT--TSC---BHHHHHHHHHHHHHHHCTTCCSCCEEEEEECSCC
T ss_pred             HHH--ccC---cHHHHHHHHHHHHHhhcCCCCCeeEEEEeCCccc
Confidence            442  355   4799999999996        6799999999543

>3b55_A Succinoglycan biosynthesis protein; Q81BN2, NESG, BCR135, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus cereus atcc 14579} SCOP: c.150.1.3 PDB: 2rad_A

Probab=98.80  E-value=1.1e-08  Score=104.90  Aligned_cols=101  Identities=21%  Similarity=0.215  Sum_probs=82.2

Q ss_pred             CHHHHHHHHhcCCEEEEcc-ccCCCCchhHHHHHHHHHHHHhhccccCCCceEEeeccCCCCchhhhhhhcCCCChHHHH
Q 043788          135 DKRKVWEKLMNARVVYLGE-AEQVPVRDDRELELQIVKNLRKRCVESERTITLALEAFPSDLQDQLNQYTDKRIDGETLK  213 (387)
Q Consensus       135 ~~~~l~~~La~adVVlLGE-~Hdnp~~~hH~lQl~llraL~~r~~e~g~~~aLgLEMF~~d~Q~~LD~ylaG~Ide~~Ll  213 (387)
                      |++.|.+.+.+++||+||| .|.+.  +-++++.+|++.|.+++    .--+|+||.. ...+..+|+|+.|..++..  
T Consensus        64 dl~~L~~~i~~ariV~lGEatHG~~--ef~~~r~~l~r~Lve~~----Gf~~va~E~d-~~~~~~vn~yv~~~~g~~~--  134 (451)
T 3b55_A           64 DLKPLKNMVGSASIVGLGEATHGAH--EVFTMKHRIVKYLVSEK----GFTNLVLEEG-WDRALELDRYVLTGKGNPS--  134 (451)
T ss_dssp             GGTTHHHHHTTCSEEEEEESCTTBH--HHHHHHHHHHHHHHHHS----CCCEEEEEEE-HHHHHHHHHHHHHSCSCGG--
T ss_pred             HHHHHHHhhcCCCEEEEeCCCCCch--HHHHHHHHHHHHHHHhc----CCeEEEEecC-hHHHHHHHHHHhcCCchhh--
Confidence            6889999999999999999 89977  89999999999999852    3469999995 5889999999998766544  


Q ss_pred             HHhc-CCCCCCCcccHHHHHHHHh--------cCCcEEecCCC
Q 043788          214 SYAS-HWPPQRWQEYEPLLSYCRD--------NGVQLLACGTP  247 (387)
Q Consensus       214 ~w~~-~W~~~~w~lYrPL~~~Ar~--------~gipviAlNlP  247 (387)
                      .|.. -|.+   +.|+++|++.|+        ..+.++|+.+.
T Consensus       135 ~~~~~~w~n---~e~~~lv~wlR~~N~~~~~~~~v~f~G~D~~  174 (451)
T 3b55_A          135 QHLTPVFKT---KEMLDLLDWIRQYNANPKHKSKVRVIGMDIQ  174 (451)
T ss_dssp             GTSCGGGCB---HHHHHHHHHHHHHHHCTTCSCCCEEEEEECS
T ss_pred             hcccccccc---HHHHHHHHHHHHHhhcCCCCCceEEEEeccc
Confidence            2221 2553   699999999995        46789986553

>2ebf_X Dermonecrotic toxin; pasteurella multocida toxin, trojan horse-like fold; HET: TRE; 1.90A {Pasteurella multocida} SCOP: a.296.1.1 c.150.1.2 d.3.1.17 PDB: 2ec5_A 2ebh_X*

Probab=96.81  E-value=0.005  Score=64.65  Aligned_cols=101  Identities=16%  Similarity=0.242  Sum_probs=71.7

Q ss_pred             HHHHHHHHhcCCEEEEccccCCCCchhHHHHHHHHHHHHhhccccCCCceEEeeccCCC-CchhhhhhhcCCCChHHHHH
Q 043788          136 KRKVWEKLMNARVVYLGEAEQVPVRDDRELELQIVKNLRKRCVESERTITLALEAFPSD-LQDQLNQYTDKRIDGETLKS  214 (387)
Q Consensus       136 ~~~l~~~La~adVVlLGE~Hdnp~~~hH~lQl~llraL~~r~~e~g~~~aLgLEMF~~d-~Q~~LD~ylaG~Ide~~Ll~  214 (387)
                      .+.|-+-+..++=+++||.|.     .-++=.+=+..|.+    .|- -.|.||-+..| .|..||+|+.+.--.++|..
T Consensus       360 n~~Le~Lyk~s~GLVIGESHs-----SkRFIIdNM~~Lk~----~GV-tTLYMEHL~SDlhQAdLD~YLqTG~MSk~L~a  429 (746)
T 2ebf_X          360 NERIEKCMNTYRGVAFQNSSK-----SIDFFLNNLTTFID----NGL-TEIAISDLPYDIVQQEISQFLQGSNEWKTLDA  429 (746)
T ss_dssp             HHHHHHHHHTTSEEEEESCHH-----HHHHHHHTHHHHHH----TTC-CEEEEEEEEHHHHHHHHHHHHTTCSCCHHHHH
T ss_pred             HHHHHHHHhcCCceEEeccch-----hHHHHHHHHHHHHh----CCc-eeehHhhhhhHHHHHHHHHHHhcCCcchHHHH
Confidence            345556688999999999996     23333344455654    233 47999999999 78999999986643346653


Q ss_pred             HhcC-C-CCCCCcccHHHHHHHHhcCCcEEecCCC
Q 043788          215 YASH-W-PPQRWQEYEPLLSYCRDNGVQLLACGTP  247 (387)
Q Consensus       215 w~~~-W-~~~~w~lYrPL~~~Ar~~gipviAlNlP  247 (387)
                      +.+. | +.++ .-++-|++.||++||+|+|+...
T Consensus       430 ~Lktld~Ghl~-~sF~~Li~~AR~nGIRIrAID~a  463 (746)
T 2ebf_X          430 MLFNLDKGDIN-GAFRKLLQSAKDNNIKFRAIGHS  463 (746)
T ss_dssp             HHHHHTTTCSS-CHHHHHHHHHHHTTCEEEEEECC
T ss_pred             HHhhccccccc-HHHHHHHHHHHHcCceEEEeccc
Confidence            3222 2 2221 26999999999999999999877

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	387
d2g5gx1	255	c.150.1.1 (X:9-263) Heme transport protein ChaN {C	2e-30

>d2g5gx1 c.150.1.1 (X:9-263) Heme transport protein ChaN {Campylobacter jejuni [TaxId: 197]} Length = 255

class: Alpha and beta proteins (a/b)
fold: EreA/ChaN-like
superfamily: EreA/ChaN-like
family: ChaN-like
domain: Heme transport protein ChaN
species: Campylobacter jejuni [TaxId: 197]

 Score =  114 bits (287), Expect = 2e-30
 Identities = 35/239 (14%), Positives = 81/239 (33%), Gaps = 25/239 (10%)

Query: 138 KVWEKLMNARVVYLGEAEQVPVRDDRELELQIVKNLRKRCVESERTITLALEAFPSDLQD 197
            +  +L+ A V+ LGE         +  ++ I   L            +ALE   S  Q+
Sbjct: 23  DMILELLKADVILLGEKHDEV--KHKISQVMIFNALEGNLSSQNINFDVALEMLASTEQN 80

Query: 198 QLNQYTDKRID-GETLKSYASHWP-PQRWQEYEPLLSYCRDNGVQLLACGTPLKVLRTVQ 255
            L++    +        + A +W    +W++YE  ++    +  ++L        + ++ 
Sbjct: 81  HLDKAFKNKKTIKANELTNALNWDKVWKWKDYEQFVNVVFYSKSKILGANLSRSEITSIY 140

Query: 256 AEGIHGLSKADRKLYAPPAGSGFISGFTSISHRSSVDMNSLTQSVPFGPSSYLSAQARVV 315
                        +         +    S+SH+ + + N                + +  
Sbjct: 141 NGAQP----LKGYVSTTNEVKKQLFDIISLSHKLNPEENKELLDKLV--------EIQQF 188

Query: 316 EDYAMSQIILKAIMDGGANGMLVVVTGASHVTYGSRGTGLPARISKKLQKKNQVVILLD 374
           +D  M+ +++           ++++ G+ H +      G+P  I      K  VV+ L 
Sbjct: 189 KDRRMADVLVH------HVNKVLLLAGSYHTSK---KIGIPLHIQDFKSSKKIVVVNLS 238

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	387
d2g5gx1	255	Heme transport protein ChaN {Campylobacter jejuni	100.0
d3b55a1	403	Succinoglycan biosynthesis protein BC3120 {Bacillu	98.12
d2qgma1	413	Succinoglycan biosynthesis protein BC3205 {Bacillu	98.06
d2ebfx2	219	Dermonecrotic toxin, ToxA {Pasteurella multocida [	97.7

>d2g5gx1 c.150.1.1 (X:9-263) Heme transport protein ChaN {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: EreA/ChaN-like
superfamily: EreA/ChaN-like
family: ChaN-like
domain: Heme transport protein ChaN
species: Campylobacter jejuni [TaxId: 197]

Probab=100.00  E-value=1.1e-53  Score=406.48  Aligned_cols=225  Identities=16%  Similarity=0.228  Sum_probs=185.9

Q ss_pred             eeeEEeecccCCcccccCcCHHHHHHHHhcCCEEEEccccCCCCchhHHHHHHHHHHHHhhccccCCCceEEeeccCCCC
Q 043788          116 VVSRIYDATVIGEPLAVGKDKRKVWEKLMNARVVYLGEAEQVPVRDDRELELQIVKNLRKRCVESERTITLALEAFPSDL  195 (387)
Q Consensus       116 ~~~rI~D~~~~G~~is~~~~~~~l~~~La~adVVlLGE~Hdnp~~~hH~lQl~llraL~~r~~e~g~~~aLgLEMF~~d~  195 (387)
                      -.|+|||+++ |++++    +++++++++++|||||||.||||  +||++|+++|++|+.++.+++++++||||||++++
T Consensus         6 ~~~~i~~~~~-~~~is----~~~l~~~l~~advVllGE~Hdn~--~hH~~Ql~ii~~L~~~l~~~~~~~al~~EMf~~~~   78 (255)
T d2g5gx1           6 KDFYILDTHT-QKKIS----FEDMILELLKADVILLGEKHDEV--KHKISQVMIFNALEGNLSSQNINFDVALEMLASTE   78 (255)
T ss_dssp             TTEEEEETTT-TEECC----HHHHHHHHTTCSEEEEEECTTCH--HHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEGGG
T ss_pred             CCeEEEECCC-CCCCC----HHHHHHHHhcCCEEEECCCCCCH--HHHHHHHHHHHHHHHHHhhcCCCcEEEEEcCChhh
Confidence            5699999987 99997    99999999999999999999999  89999999999998766668999999999999999


Q ss_pred             chhhhhhhcCCCC--hHHHH---HHhcCCCCCCCcccHHHHHHHHhcCCcEEecCCCHHHHHHHHHhcc-----cCCCHH
Q 043788          196 QDQLNQYTDKRID--GETLK---SYASHWPPQRWQEYEPLLSYCRDNGVQLLACGTPLKVLRTVQAEGI-----HGLSKA  265 (387)
Q Consensus       196 Q~~LD~ylaG~Id--e~~Ll---~w~~~W~~~~w~lYrPL~~~Ar~~gipviAlNlPre~vr~V~r~Gl-----~sLs~e  265 (387)
                      |++||+|++|+++  +.+|.   +|.+.|+   |++|+|||+|||++++||||+|+||+++++|+++|.     .+++++
T Consensus        79 Q~~Ld~~~~g~~~~~~~~l~~~~~W~~~W~---w~~Y~pl~~~A~~~~~pvia~N~pr~~~~~v~~~g~~~~~~~~~~~~  155 (255)
T d2g5gx1          79 QNHLDKAFKNKKTIKANELTNALNWDKVWK---WKDYEQFVNVVFYSKSKILGANLSRSEITSIYNGAQPLKGYVSTTNE  155 (255)
T ss_dssp             HHHHHHHHHTGGGCCTTTHHHHTTCCTTSC---GGGTHHHHHHHHTSSCCEEEEECCHHHHHHHHTTCCCCCCSSSSCHH
T ss_pred             hhHHHHHhccCCCcCHHHHHHhcCCCcCCC---cchHHHHHHHHHHCCCCEEecCCCHHHHHHHHhCCCCccccccCCHH
Confidence            9999999999954  44453   6888887   899999999999999999999999999999999994     345555


Q ss_pred             HHhhcCCCCCCcccchhhhhcccccccccccCCCCCCCCcchHHHHhhhhhhHHHHHHHHHHHHhcCCCCeEEEEeCCCc
Q 043788          266 DRKLYAPPAGSGFISGFTSISHRSSVDMNSLTQSVPFGPSSYLSAQARVVEDYAMSQIILKAIMDGGANGMLVVVTGASH  345 (387)
Q Consensus       266 eR~~l~pp~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~f~~aQAq~l~D~tMAe~I~~al~~~~p~~~vVvIaG~gH  345 (387)
                      .++.+.            ..+..++|.+...   ....+++|+.+|  ++||++||++|.+      ++++||||||+||
T Consensus       156 ~~~~~~------------~~~~~~h~~~~~~---~~~~~~~m~~aQ--~~~Da~MA~~i~~------~~~~vvvIaG~gH  212 (255)
T d2g5gx1         156 VKKQLF------------DIISLSHKLNPEE---NKELLDKLVEIQ--QFKDRRMADVLVH------HVNKVLLLAGSYH  212 (255)
T ss_dssp             HHHHHH------------HHHHHHHTCCTTT---THHHHHHHHHHH--HHHHHHHHHHHHH------CSSEEEEEEEHHH
T ss_pred             HHHHHH------------HHHHHhccccchh---hHHHHHHHHHHH--HHHHHHHHHHHHh------cCCeEEEEcCcch
Confidence            555442            1111223432110   001246899777  9999999999964      3568999999999


Q ss_pred             cccCCCCcchhhHHhhhcCCCceEEEEeCCC
Q 043788          346 VTYGSRGTGLPARISKKLQKKNQVVILLDLK  376 (387)
Q Consensus       346 v~~g~r~~GVP~rL~r~~P~~~~~vVll~p~  376 (387)
                      +++|   +|||.||+++.|+++++++.+..+
T Consensus       213 ~~~~---~GiP~~L~~~~p~~~~~v~~~~~~  240 (255)
T d2g5gx1         213 TSKK---IGIPLHIQDFKSSKKIVVVNLSYG  240 (255)
T ss_dssp             HCTT---TSHHHHHHHTTCCSCEEEEEECCS
T ss_pred             hcCC---ccHHHHHHhhCCCCcEEEEecCCC
Confidence            9977   999999999999988877766543

>d3b55a1 c.150.1.3 (A:40-442) Succinoglycan biosynthesis protein BC3120 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: EreA/ChaN-like
superfamily: EreA/ChaN-like
family: EreA-like
domain: Succinoglycan biosynthesis protein BC3120
species: Bacillus cereus [TaxId: 1396]

Probab=98.12  E-value=3.2e-06  Score=82.74  Aligned_cols=101  Identities=22%  Similarity=0.233  Sum_probs=77.9

Q ss_pred             CHHHHHHHHhcCCEEEEcc-ccCCCCchhHHHHHHHHHHHHhhccccCCCceEEeeccCCCCchhhhhhhcC-CCChHHH
Q 043788          135 DKRKVWEKLMNARVVYLGE-AEQVPVRDDRELELQIVKNLRKRCVESERTITLALEAFPSDLQDQLNQYTDK-RIDGETL  212 (387)
Q Consensus       135 ~~~~l~~~La~adVVlLGE-~Hdnp~~~hH~lQl~llraL~~r~~e~g~~~aLgLEMF~~d~Q~~LD~ylaG-~Ide~~L  212 (387)
                      |.+.|.+.+.+++||+||| .|.+.  +--++-.+|+|.|.+.   .|-+ +|+||. +...=..||+|+.| +-+.+++
T Consensus        25 Dl~~L~~~v~dariV~LGEatHGt~--Ef~~~r~~l~r~Lvee---~Gf~-~va~E~-d~~~~~~vn~yV~~g~g~~~~~   97 (403)
T d3b55a1          25 DLKPLKNMVGSASIVGLGEATHGAH--EVFTMKHRIVKYLVSE---KGFT-NLVLEE-GWDRALELDRYVLTGKGNPSQH   97 (403)
T ss_dssp             GGTTHHHHHTTCSEEEEEESCTTBH--HHHHHHHHHHHHHHHH---SCCC-EEEEEE-EHHHHHHHHHHHHHSCSCGGGT
T ss_pred             HHHHHHHHhCCCeEEEEecCccccH--HHHHHHHHHHHHHHHH---cCCC-EEEEeC-CcHHHHHHHHHHhcCCCCHHHH
Confidence            6889999999999999999 88765  6677778999999885   3444 899997 44444689999864 4455555


Q ss_pred             HHHhcCCCCCCCcccHHHHHHHHh--------cCCcEEecCCC
Q 043788          213 KSYASHWPPQRWQEYEPLLSYCRD--------NGVQLLACGTP  247 (387)
Q Consensus       213 l~w~~~W~~~~w~lYrPL~~~Ar~--------~gipviAlNlP  247 (387)
                      ..|  -|.+   +.+..+|++-|+        .+|.++|+.++
T Consensus        98 ~~~--~w~~---~e~~~li~WmR~yN~~~~~~~~v~f~G~D~~  135 (403)
T d3b55a1          98 LTP--VFKT---KEMLDLLDWIRQYNANPKHKSKVRVIGMDIQ  135 (403)
T ss_dssp             SCG--GGCB---HHHHHHHHHHHHHHHCTTCSCCCEEEEEECS
T ss_pred             hHh--hhcc---HHHHHHHHHHHHHhccCCCCCceEEEEeccc
Confidence            444  4764   689999999987        25889999876

>d2qgma1 c.150.1.3 (A:33-445) Succinoglycan biosynthesis protein BC3205 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: EreA/ChaN-like
superfamily: EreA/ChaN-like
family: EreA-like
domain: Succinoglycan biosynthesis protein BC3205
species: Bacillus cereus [TaxId: 1396]

Probab=98.06  E-value=4.6e-06  Score=81.92  Aligned_cols=101  Identities=20%  Similarity=0.268  Sum_probs=77.1

Q ss_pred             CHHHHHHHHhcCCEEEEccc-cCCCCchhHHHHHHHHHHHHhhccccCCCceEEeeccCCCCchhhhhhhcCC-CChHHH
Q 043788          135 DKRKVWEKLMNARVVYLGEA-EQVPVRDDRELELQIVKNLRKRCVESERTITLALEAFPSDLQDQLNQYTDKR-IDGETL  212 (387)
Q Consensus       135 ~~~~l~~~La~adVVlLGE~-Hdnp~~~hH~lQl~llraL~~r~~e~g~~~aLgLEMF~~d~Q~~LD~ylaG~-Ide~~L  212 (387)
                      |.+.|.+.+.+++||+|||. |.+.  +--++-.+|++.|.+.   .|-+ +|+||. +...=..+|+|+.|. -+.+++
T Consensus        31 DL~~L~~~v~dariV~LGEatHGt~--Ef~~~r~~l~r~Lvee---~Gf~-~vA~E~-d~~~~~~vn~yV~~g~g~~~~~  103 (413)
T d2qgma1          31 DLKPLKKMIGNAQYVGLGENTHGSS--EIFTMKFRLVKYLVTE---MGFT-NFAMEE-DWGNGLKLNEYIQTGKGNPREF  103 (413)
T ss_dssp             GGHHHHHHHTTCSEEEECCSSSCBH--HHHHHHHHHHHHHHHH---HCCC-EEEEEE-EHHHHHHHHHHHHHCCSCGGGT
T ss_pred             HHHHHHHhhCCCeEEEEecCccCcH--HHHHHHHHHHHHHHHH---cCCC-EEEEec-CcHHHHHHHHHHhcCCCCHHHH
Confidence            68899999999999999995 6544  5666778999999885   3443 899998 444456899999754 444555


Q ss_pred             HHHhcCCCCCCCcccHHHHHHHHh--------cCCcEEecCCC
Q 043788          213 KSYASHWPPQRWQEYEPLLSYCRD--------NGVQLLACGTP  247 (387)
Q Consensus       213 l~w~~~W~~~~w~lYrPL~~~Ar~--------~gipviAlNlP  247 (387)
                      ..|  -|.+   .....||++-|+        .+|.++|+.++
T Consensus       104 ~~~--~w~~---~e~~~lv~WlR~~N~~~~~~~~v~f~G~D~~  141 (413)
T d2qgma1         104 LKL--LYPT---DEIIAMIEWMKDYNADPSNKKKIQFIGLDLK  141 (413)
T ss_dssp             SCT--TSCB---HHHHHHHHHHHHHHHCTTCCSCCEEEEEECS
T ss_pred             HHH--hhcc---HHHHHHHHHHHHHcccCCCCCceeEEEeccc
Confidence            544  3663   689999999987        35779999877

>d2ebfx2 c.150.1.2 (X:875-1093) Dermonecrotic toxin, ToxA {Pasteurella multocida [TaxId: 747]}

class: Alpha and beta proteins (a/b)
fold: EreA/ChaN-like
superfamily: EreA/ChaN-like
family: PMT domain-like
domain: Dermonecrotic toxin, ToxA
species: Pasteurella multocida [TaxId: 747]

Probab=97.70  E-value=8.9e-05  Score=66.16  Aligned_cols=98  Identities=14%  Similarity=0.220  Sum_probs=70.1

Q ss_pred             HHHHHHHHhcCCEEEEccccCCCCchhHHHHHHHHHHHHhhccccCCCceEEeeccCCC-CchhhhhhhcCC-CChH--H
Q 043788          136 KRKVWEKLMNARVVYLGEAEQVPVRDDRELELQIVKNLRKRCVESERTITLALEAFPSD-LQDQLNQYTDKR-IDGE--T  211 (387)
Q Consensus       136 ~~~l~~~La~adVVlLGE~Hdnp~~~hH~lQl~llraL~~r~~e~g~~~aLgLEMF~~d-~Q~~LD~ylaG~-Ide~--~  211 (387)
                      -+++..-+...+=+++||.|.     .-++=++=+..|.++     .-..|+||-+..| .|+.||+|+++. ++.+  .
T Consensus        25 ~~ql~~ll~~~~Gllige~hg-----S~RfvienM~~Lk~~-----GVTvI~lEHL~sD~~Q~~Id~Yl~~G~~S~~L~a   94 (219)
T d2ebfx2          25 NERIEKCMNTYRGVAFQNSSK-----SIDFFLNNLTTFIDN-----GLTEIAISDLPYDIVQQEISQFLQGSNEWKTLDA   94 (219)
T ss_dssp             HHHHHHHHHTTSEEEEESCHH-----HHHHHHHTHHHHHHT-----TCCEEEEEEEEHHHHHHHHHHHHTTCSCCHHHHH
T ss_pred             HHHHHHHhccCCceEEecCcc-----hHHHHHHhhHHHHHC-----CceEEeHhhhhhhHHHHHHHHHHhcCcCCccHHH
Confidence            456677788999999999995     234444455566552     3358999999999 699999999855 5443  3


Q ss_pred             HH-HHhcCCCCCCCcccHHHHHHHHhcCCcEEecCC
Q 043788          212 LK-SYASHWPPQRWQEYEPLLSYCRDNGVQLLACGT  246 (387)
Q Consensus       212 Ll-~w~~~W~~~~w~lYrPL~~~Ar~~gipviAlNl  246 (387)
                      ++ .+.+. ..  -.-++-||+-||++||.|+|+..
T Consensus        95 ~Lk~l~~~-d~--~gaf~~Li~~Ar~ngikI~aLd~  127 (219)
T d2ebfx2          95 MLFNLDKG-DI--NGAFRKLLQSAKDNNIKFRAIGH  127 (219)
T ss_dssp             HHHHHTTT-CS--SCHHHHHHHHHHHTTCEEEEEEC
T ss_pred             HHHHhhcc-cc--hhhHHHHHHHHHHCCcEEEEccC
Confidence            34 44443 21  13455799999999999999853