Citrus Sinensis ID: 043789

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MTTYGTIPTETPELSSQPLSTRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFVIDDRILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEERLGSLQSNRVVPLPLKHAASPSSSS
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHccccccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHccHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccEEEEccEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mttygtiptetpelssqplSTRVKRLIEsgfgtprpwdefiqiqsiklptsFANFIERIQSNAAFYRMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFVIDDRILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAahagfrstddmfsaddeerlgslqsnrvvplplkhaaspssss
Flexible Loop (DISEMBL)
mttygtiptetpelssqplsTRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFVIDDRILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEERLGslqsnrvvplplkhaaspssss
Low Complexity Region (SEG)
MTTYGTIPTETPELSSQPLSTRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRMNYAviilsiivvslFWNPVSliiliiliaawlflyflRDGDRLVVYGFVIDDRILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEERLGSLQSNRVVPLPLKHAASPSSSS
Disordered region (IsUnstruct)
************************RLIESGFGTPRPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFVIDDRILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFR*************************************
Disordered Region (DISOPRED)
***YGTI************************GTPRPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFVIDDRILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSA*****************************
Disordered Region (DISEMBL)
*******************STRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFVIDDRILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEERLGSLQSNRVVPLPL**********
Disordered Region (DISPRO)
*****TIPTETPELSSQPLSTRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFVIDDRILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSAD****************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTTYGTIPTETPELSSQPLSTRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFVIDDRILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEERLGSLQSNRVVPLPLKHAASPSSSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	199	2.2.26 [Sep-21-2011]
Q9C889	189	PRA1 family protein F2 OS	yes	no	0.924	0.973	0.397	2e-32
Q9LIC7	188	PRA1 family protein F4 OS	no	no	0.804	0.851	0.414	4e-28
Q9LIC6	188	PRA1 family protein F3 OS	no	no	0.854	0.904	0.401	1e-27
Q9FRR1	209	PRA1 family protein E OS=	no	no	0.819	0.779	0.353	1e-26
Q9FZ63	180	PRA1 family protein F1 OS	no	no	0.879	0.972	0.370	5e-24
O80915	220	PRA1 family protein B4 OS	no	no	0.844	0.763	0.311	9e-22
Q9M012	223	PRA1 family protein B5 OS	no	no	0.854	0.762	0.338	1e-21
Q9LYN0	209	PRA1 family protein B1 OS	no	no	0.869	0.827	0.345	7e-20
P93829	182	PRA1 family protein D OS=	no	no	0.809	0.884	0.320	1e-19
Q9FH16	186	PRA1 family protein G2 OS	no	no	0.859	0.919	0.280	2e-17

>sp|Q9C889|PR1F2_ARATH PRA1 family protein F2 OS=Arabidopsis thaliana GN=PRA1F2 PE=1 SV=1

 Score =  138 bits (348), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 76/191 (39%), Positives = 114/191 (59%), Gaps = 7/191 (3%)

Query: 1   MTTYGTIPTET---PELSSQPLSTRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIE 57
           MT YG IPT +   P +  + +S R K  I+SG  T RPW      +S+ LP  F + I 
Sbjct: 1   MTNYGAIPTSSHPSPAIDLEYIS-RAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAIS 59

Query: 58  RIQSNAAFYRMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFV 117
           RI++N  ++R NYA+ +L I+ +SL ++P SLI+L IL+  W+FLYFLRD + LVV+G+ 
Sbjct: 60  RIKTNLGYFRANYAIGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLRD-EPLVVFGYQ 118

Query: 118 IDDRILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEERLG 177
           IDDR ++  L   T+  L LT  T NI+  L    V++  HA  R +D++F   DEE   
Sbjct: 119 IDDRTVLIGLSVLTVVMLLLTHATSNILGSLLTAAVLVLIHAAVRRSDNLFL--DEEAAA 176

Query: 178 SLQSNRVVPLP 188
             +++ ++  P
Sbjct: 177 VTEASGLMSYP 187

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIC7|PR1F4_ARATH PRA1 family protein F4 OS=Arabidopsis thaliana GN=PRA1F4 PE=2 SV=1

 Score =  124 bits (311), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 68/164 (41%), Positives = 98/164 (59%), Gaps = 4/164 (2%)

Query: 11  TPELSSQPLSTRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRMNY 70
           +P ++ + +S R K+ I+ G  T R W     + S  LP   ++   RI++N A++R NY
Sbjct: 14  SPAVNHESIS-RAKQRIKDGLATRRSWRVMFDLHSTGLPHGVSDVFSRIKTNLAYFRSNY 72

Query: 71  AVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFVIDDRILMTALLPG 130
           A++IL++I  SL W+P SLI+   L+  W+FLYFLRD   L V+ F IDDR ++  L   
Sbjct: 73  AIVILNVIFFSLIWHPTSLIVFTGLVFLWIFLYFLRDVP-LKVFRFQIDDRAVLIGLSVI 131

Query: 131 TIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEE 174
           TI  L LT+ T NI+  L  G V++  HA  R TDD+F   DEE
Sbjct: 132 TIVLLLLTNATFNIVAALMAGAVLVLIHAVIRKTDDLFL--DEE 173

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIC6|PR1F3_ARATH PRA1 family protein F3 OS=Arabidopsis thaliana GN=PRA1F3 PE=1 SV=1

 Score =  122 bits (307), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/177 (40%), Positives = 106/177 (59%), Gaps = 7/177 (3%)

Query: 1   MTTYGTIPTET---PELSSQPLSTRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIE 57
           MT YG IPT +   P +  + LS R K  I++G  T R W       S+ LP   ++   
Sbjct: 1   MTNYGAIPTSSHASPLVDVESLS-RAKHRIKAGLATRRAWRVMFDFHSMGLPHGVSDAFT 59

Query: 58  RIQSNAAFYRMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFV 117
           RI++N A++RMNYA+++L +I  SL W+P SLI+  +L+  W+FLYFLRD + + ++ F 
Sbjct: 60  RIKTNLAYFRMNYAIVVLIVIFFSLIWHPTSLIVFTVLVVVWIFLYFLRD-EPIKLFRFQ 118

Query: 118 IDDRILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEE 174
           IDDR ++  L   T+  L LT+ T NI+  L  G V++  H+  R T+D+F   DEE
Sbjct: 119 IDDRTVLIVLSVLTVVLLLLTNATFNIVGALVTGAVLVLIHSVVRKTEDLFL--DEE 173

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FRR1|PRA1E_ARATH PRA1 family protein E OS=Arabidopsis thaliana GN=PRA1E PE=1 SV=1

 Score =  119 bits (298), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 101/164 (61%), Gaps = 1/164 (0%)

Query: 19  LSTRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRMNYAVIILSII 78
           LS R K+  +S   T RPW E + + ++ LP  +   +  ++ N +++R NYA+ +L+I+
Sbjct: 32  LSARAKQTTQSMITTLRPWREILDLSALSLPRGYDEAMAHLKHNISYFRGNYALAVLAIV 91

Query: 79  VVSLFWNPVSLIILIILIAAWLFLYFLRDG-DRLVVYGFVIDDRILMTALLPGTIAFLFL 137
            + L ++P+S+I  I++   W+ LYF RD  D +V+ G  +DD+I++  L   T+  L  
Sbjct: 92  FLGLIYHPMSMIAFIVVFIGWILLYFSRDANDSIVISGKEVDDKIVLVLLSLVTVLALVY 151

Query: 138 TDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEERLGSLQS 181
           TDV +N+++ L IG +++ AH  FR+TDD+F  ++  R G L S
Sbjct: 152 TDVGENVLVSLIIGLLIVGAHGAFRNTDDLFLDEESARRGGLVS 195

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZ63|PR1F1_ARATH PRA1 family protein F1 OS=Arabidopsis thaliana GN=PRA1F1 PE=1 SV=1

 Score =  110 bits (276), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 66/178 (37%), Positives = 106/178 (59%), Gaps = 3/178 (1%)

Query: 1   MTTYGTIPTETPELSS--QPLSTRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIER 58
           MTTYGT    + +L+   + ++  + +   SG  T RPW + + + S   P   A  I R
Sbjct: 1   MTTYGTNQKSSNDLAPKLEYITRGINQHKRSGLATRRPWKQMLDLGSFNFPRKLATVITR 60

Query: 59  IQSNAAFYRMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFVI 118
           I++N  +++ NY +++L  + +SL WNP SL++L+ L+ AWLFLYFLRD + L V+   I
Sbjct: 61  IRANTVYFQTNYTIVVLFSVFLSLIWNPFSLLVLLALLGAWLFLYFLRD-EPLTVFDREI 119

Query: 119 DDRILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEERL 176
           D RI++  +   T++ LFLTD   NI + +  G + + +HA  R T+D+F  D+E  L
Sbjct: 120 DHRIVLIIMSVITLSILFLTDAKLNIAVAIVAGALAVLSHAAVRKTEDLFQTDEETSL 177

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|O80915|PR1B4_ARATH PRA1 family protein B4 OS=Arabidopsis thaliana GN=PRA1B4 PE=1 SV=1

 Score =  103 bits (256), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 99/180 (55%), Gaps = 12/180 (6%)

Query: 6   TIPTETPE-LSSQP---------LSTRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANF 55
           T+P+  P  + SQP            ++   +++G    RPW E     ++  P S ++ 
Sbjct: 16  TVPSAAPSSVESQPPIATPAFRNFINQITETVKNGLSKRRPWAELADRSALSKPESISDA 75

Query: 56  IERIQSNAAFYRMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDR-LVVY 114
             RI+ N +++++NY  +  +I+  SL  +P SL+ L+ L+A+WLFLY  R  D+ +V++
Sbjct: 76  AVRIRKNYSYFKVNYLTVATAIVGFSLVTHPFSLVFLLCLLASWLFLYLFRPTDQPIVLF 135

Query: 115 GFVIDDRILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEE 174
           G    DR  +  L+  +I  +FLTDV   ++  + IG  +I AH  FR+ +D+F  D++E
Sbjct: 136 GRTFSDRETLGCLILFSIFVIFLTDVGSVLVSAMMIGVALICAHGAFRAPEDLF-LDEQE 194

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M012|PR1B5_ARATH PRA1 family protein B5 OS=Arabidopsis thaliana GN=PRA1B5 PE=1 SV=1

 Score =  102 bits (255), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 90/177 (50%), Gaps = 7/177 (3%)

Query: 8   PTETPELSSQPLSTR-----VKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIERIQSN 62
           P  T  + SQP   R     V   +  G    RPW E +   +   P S +    R + N
Sbjct: 23  PIVTAVVESQPPVVRAFVNGVTETVCGGLSRSRPWSELLDRSAFTKPDSLSEAGTRFRKN 82

Query: 63  AAFYRMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDR-LVVYGFVIDDR 121
           ++++R+NY  I+  I+  SL  +P SLI+L+ L A+WLFLY  R  DR L+++G    + 
Sbjct: 83  SSYFRVNYVCIVALILGFSLLAHPFSLILLLCLAASWLFLYLFRPSDRPLILFGRSFSEY 142

Query: 122 ILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEERLGS 178
             +  L+  TIA +F T V   +I  L IG   I  H  FR+ DD+F  D+++   S
Sbjct: 143 ETLGGLILSTIAVIFFTSVGSVLISALMIGIATICVHGAFRAPDDLF-LDEQDHAAS 198

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYN0|PR1B1_ARATH PRA1 family protein B1 OS=Arabidopsis thaliana GN=PRA1B1 PE=1 SV=1

 Score = 97.1 bits (240), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 97/185 (52%), Gaps = 12/185 (6%)

Query: 1   MTTYGTIP-TETPELSSQP---------LSTRVKRLIESGFGTPRPWDEFIQIQSIKLPT 50
           M T  T+P T    + SQP           +R+   I  G    RPW E I   S+  P 
Sbjct: 1   MATPPTLPVTNQQAVQSQPPINTPAFRTFFSRLSTSIRDGLSQRRPWTELIDRSSMARPE 60

Query: 51  SFANFIERIQSNAAFYRMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDR 110
           S  + + RI+ N A++++NY  I+  ++  SLF +P+SL++LI L+  W+FLY  R  D+
Sbjct: 61  SLTDALSRIRKNLAYFKVNYVAIVSLVLAFSLFSHPLSLLVLIGLLGGWMFLYLFRPSDQ 120

Query: 111 -LVVYGFVIDDRILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFS 169
            LVV+G    DR  + AL+  TI  +F+T V   +   L IG  ++  H  F   DD+F 
Sbjct: 121 PLVVFGRTFSDRETLLALVLSTIVVVFMTSVGSLLTSALMIGVAIVCVHGAFVVPDDLF- 179

Query: 170 ADDEE 174
            D++E
Sbjct: 180 LDEQE 184

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|P93829|PRA1D_ARATH PRA1 family protein D OS=Arabidopsis thaliana GN=PRA1D PE=1 SV=1

 Score = 96.3 bits (238), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 88/162 (54%), Gaps = 1/162 (0%)

Query: 21  TRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRMNYAVIILSIIVV 80
           T +K   +S  G  RPW +F+ + +   P+S A+   R+  N   +R+NY++I+  ++ +
Sbjct: 7   TGIKETAQSITGAARPWGDFLDLSAFSFPSSIADATTRVTQNLTHFRINYSIILSILLGL 66

Query: 81  SLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFVIDDRILMTALLPGTIAFLFLTDV 140
           +L   P++++  I +  AW FLYF R+ + L ++GF IDD I+   L+  +I  L  T V
Sbjct: 67  TLITRPIAILAFIAVGLAWFFLYFARE-EPLTIFGFTIDDGIVAVLLIGLSIGSLVTTGV 125

Query: 141 TKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEERLGSLQSN 182
               +  +  G +V+  HA  R TDD+ S D E   G + S 
Sbjct: 126 WLRALTTVGFGVLVLILHAALRGTDDLVSDDLESPYGPMLST 167

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH16|PR1G2_ARATH PRA1 family protein G2 OS=Arabidopsis thaliana GN=PRA1G2 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 101/178 (56%), Gaps = 7/178 (3%)

Query: 3   TYGTIPTETPELSSQPLSTRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIERIQSN 62
           TY +IP  T ++ S+ +       + +   + RPW E I      LP SF++ + R ++N
Sbjct: 9   TYISIPLPTNDVVSRSIHN-----LTTAISSHRPWSELIFSGDFSLPESFSSLLLRSKTN 63

Query: 63  AAFYRMNYAVIILSIIVVSLF-WNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFVIDDR 121
             ++ +NY +I+ +    +L   +PV+LI++  +IA WL  +F R+ D L+++ F + DR
Sbjct: 64  FNYFFVNYTIIVSTCAAFALITASPVALIVVGAIIALWLIFHFFRE-DPLILWSFQVGDR 122

Query: 122 ILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEERLGSL 179
            ++  L+  ++  ++ T+   N+ +G+ +G ++   HA FR++D++F  +D+   G L
Sbjct: 123 TVLLFLVLASVWAIWFTNSAVNLAVGVSVGLLLCIIHAVFRNSDELFLEEDDAINGGL 180

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
255546159	205	conserved hypothetical protein [Ricinus	1.0	0.970	0.475	2e-42
449436070	199	PREDICTED: PRA1 family protein F2-like [	0.984	0.984	0.462	6e-41
225442317	193	PREDICTED: PRA1 family protein F2-like [	0.964	0.994	0.46	2e-37
359484493	189	PREDICTED: PRA1 family protein F2-like [	0.939	0.989	0.46	6e-35
357501301	201	PRA1 family protein F2 [Medicago truncat	0.969	0.960	0.422	2e-34
356550450	184	PREDICTED: PRA1 family protein F2-like [	0.879	0.951	0.412	3e-34
356497544	200	PREDICTED: PRA1 family protein F2-like [	0.969	0.965	0.432	6e-34
307136277	676	cytochrome p450 [Cucumis melo subsp. mel	0.839	0.247	0.441	9e-34
351724643	184	uncharacterized protein LOC100526887 [Gl	0.864	0.934	0.408	9e-34
356523133	198	PREDICTED: PRA1 family protein F2-like [	0.969	0.974	0.446	2e-31

>gi|255546159|ref|XP_002514139.1| conserved hypothetical protein [Ricinus communis] gi|223546595|gb|EEF48093.1| conserved hypothetical protein [Ricinus communis]

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 97/204 (47%), Positives = 133/204 (65%), Gaps = 5/204 (2%)

Query: 1   MTTYGTIPTETPELSSQPLSTRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIERIQ 60
           MTTYGTIP E+   S   +    +  IES  GT RPW E +Q+QS  LPT+F   ++ I+
Sbjct: 1   MTTYGTIPAESLPSSKLRILLNAREKIESNLGTRRPWREMMQLQSFNLPTTFHETVQSIK 60

Query: 61  SNAAFYRMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFVIDD 120
            NAA++R NY +IIL I+ +SL W+P+SLI+ II++AAWLFLYFLR+GD LVV+  V+ D
Sbjct: 61  MNAAYFRYNYVIIILVILFLSLLWHPISLIVFIIMMAAWLFLYFLREGDPLVVFDIVMHD 120

Query: 121 RILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDM-FSADDEERLGSL 179
             +MT LL  T+  L  T+V+ NIII L +G VV+  H   RSTDD+ +  D+EE  GS+
Sbjct: 121 NAVMTLLLTVTVMVLLFTNVSDNIIIALFVGVVVVVVHGAIRSTDDLKYIEDEEEGFGSV 180

Query: 180 ----QSNRVVPLPLKHAASPSSSS 199
                 +    +PLK+ AS S S+
Sbjct: 181 GVLRSGDNAGIVPLKNPASSSFSA 204

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436070|ref|XP_004135817.1| PREDICTED: PRA1 family protein F2-like [Cucumis sativus]

 Score =  172 bits (437), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 92/199 (46%), Positives = 125/199 (62%), Gaps = 3/199 (1%)

Query: 1   MTTYGTIPTETPELSSQPLSTRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIERIQ 60
           M TYGTIPTE   LS+   ++R +  I S  G  RPW E IQ Q +  PTSF   I RI+
Sbjct: 1   MGTYGTIPTEPVPLSNLHYTSRARERIASALGKRRPWMEMIQPQDLSFPTSFLQLINRIK 60

Query: 61  SNAAFYRMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFVIDD 120
           +NA ++  NY +I+L I+ +SL W P+SL++ II   AWL+LYFL D +  VV G ++DD
Sbjct: 61  NNAEYFWTNYILIVLFILFLSLLWQPISLVVFIISFLAWLYLYFLHD-EPWVVRGSIVDD 119

Query: 121 RILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEERLGSLQ 180
           +++M  L+  TIA L +TD T NIII + +G +V+  H   + ++D FS  DEE L    
Sbjct: 120 QLVMVVLMLITIALLLITDATMNIIISMFVGVLVVFVHGALKGSEDAFSL-DEEGLSEYG 178

Query: 181 SNR-VVPLPLKHAASPSSS 198
             R VV +PLKHAAS S S
Sbjct: 179 GGRGVVKMPLKHAASSSFS 197

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442317|ref|XP_002279772.1| PREDICTED: PRA1 family protein F2-like [Vitis vinifera]

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/200 (46%), Positives = 126/200 (63%), Gaps = 8/200 (4%)

Query: 1   MTTYGTIPTETPELS-SQPLSTRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIERI 59
           MTTYGTIPT +   S S    +R K  + SG  T RPW E   I+SI LP +F + + R+
Sbjct: 1   MTTYGTIPTSSAGDSPSLEFVSRAKERLRSGLATRRPWKEMFNIRSIGLPINFPDAVNRV 60

Query: 60  QSNAAFYRMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFVID 119
           ++N +F+RMNY +I+L I+ +SL W+P+SLI+ I+++A WLFLYFLRD + LVV+   ID
Sbjct: 61  KTNISFFRMNYVIIVLLILFLSLLWHPISLIVFIVMMAVWLFLYFLRD-EPLVVFHRTID 119

Query: 120 DRILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEERLGSL 179
           DR+++  LL  TI FL LT  T NI++ L IG  V+  HA FR TDD+F  ++    G L
Sbjct: 120 DRVVLIVLLILTIVFLLLTHATLNILVSLLIGVAVVVLHAAFRKTDDLFLDEEAASAGGL 179

Query: 180 QSNRVVPLPLKHAASPSSSS 199
            +           A PSSSS
Sbjct: 180 LTTP------GSTAGPSSSS 193

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484493|ref|XP_003633114.1| PREDICTED: PRA1 family protein F2-like [Vitis vinifera]

 Score =  152 bits (385), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 92/200 (46%), Positives = 128/200 (64%), Gaps = 13/200 (6%)

Query: 1   MTTYGTIPTETPELSSQPLSTRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIERIQ 60
           MTTYGTIP  TP   S    +  +  I S  GT RPW E +Q++S+ +P + A   +RI+
Sbjct: 1   MTTYGTIPAGTPVSPSLGYISFARERIRSSLGTRRPWKEMVQLRSLSIPANAAEAFQRIK 60

Query: 61  SNAAFYRMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFVIDD 120
           +NAA++RMNY ++IL I+ +SL W+P+SLI+ ++ +AAWLFLYFLRDG  +V+ G  IDD
Sbjct: 61  TNAAYFRMNYVIVILFILFLSLLWHPISLIVFVVTMAAWLFLYFLRDGP-VVILGRSIDD 119

Query: 121 RILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMF-SADDEERLGSL 179
           R++M  L   TI  LFLTDVT NI++ L IG VV+  H+  R T+D+F   +D  R    
Sbjct: 120 RVVMVILAVVTIVLLFLTDVTINILVSLLIGVVVVLTHSVVRMTEDLFVDGEDGAR---- 175

Query: 180 QSNRVVPLPLKHAASPSSSS 199
                  L L+ AAS S S+
Sbjct: 176 -------LRLRDAASSSFST 188

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501301|ref|XP_003620939.1| PRA1 family protein F2 [Medicago truncatula] gi|355495954|gb|AES77157.1| PRA1 family protein F2 [Medicago truncatula]

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 84/199 (42%), Positives = 119/199 (59%), Gaps = 6/199 (3%)

Query: 1   MTTYGTI--PTETPELSSQPLSTRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIER 58
           MTTYGTI     TP   +    T  K   +   G  RPW E IQ    KLP+SF + I+R
Sbjct: 1   MTTYGTISDAEATPSNPNLHYVTEAKERFQDNIGVTRPWKEMIQFSHFKLPSSFYDTIQR 60

Query: 59  IQSNAAFYRMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFVI 118
           I +NA  +R NY + +L  I +SL  +P+SLIILI+++ AW++LYFLR    LV++G+ I
Sbjct: 61  INTNAKHFRANYVITMLLTIFLSLLEHPISLIILIVMMIAWVYLYFLRVTP-LVIFGYEI 119

Query: 119 DDRILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEERLGS 178
           D+R ++ +LL  T   L LTDVT N+ +G+C    V+  HA  R T+D+F+ D  E +G 
Sbjct: 120 DERYVVISLLSITAGLLVLTDVTHNVEVGMCFALGVVLIHAVLRETEDLFTLD--EDVGI 177

Query: 179 LQS-NRVVPLPLKHAASPS 196
           ++    VV +PLK   S S
Sbjct: 178 VRGVKEVVKVPLKQPGSGS 196

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550450|ref|XP_003543600.1| PREDICTED: PRA1 family protein F2-like [Glycine max]

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 73/177 (41%), Positives = 116/177 (65%), Gaps = 2/177 (1%)

Query: 1   MTTYGTIPTETPELSSQPLSTRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIERIQ 60
           MT YGTIPT +   ++    +R K+ ++ G GT RPW      +S  LP    + + R++
Sbjct: 1   MTNYGTIPTSSSPSTNLDFISRAKQRVKEGLGTRRPWKLMFNFRSFGLPAGVGDAVARVR 60

Query: 61  SNAAFYRMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFVIDD 120
            N ++++MNYA+++L ++ +SL W+P+SLI+ ++L+AAWLFLYFLRD + L+++G +I D
Sbjct: 61  ENISYFQMNYAIVVLIVLFLSLLWHPISLIVFVVLMAAWLFLYFLRD-EPLIIFGRLISD 119

Query: 121 RILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEERLG 177
           R+++  +   T+  L LT    NI++ L IG V+I AHA  R TDD+F  D+EE  G
Sbjct: 120 RVVLIVMAVLTVVLLLLTGAIGNILVALLIGAVLIVAHAALRKTDDLF-LDEEEATG 175

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497544|ref|XP_003517620.1| PREDICTED: PRA1 family protein F2-like [Glycine max]

 Score =  149 bits (376), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 86/199 (43%), Positives = 129/199 (64%), Gaps = 6/199 (3%)

Query: 1   MTTYGTIPTETP--ELSSQPLSTRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIER 58
           MTTYGTI  E      S+    ++ K  I+ G GT RPW E +Q    K P+SF   I+R
Sbjct: 1   MTTYGTISEEAEPSSNSNSVFVSQAKEHIQGGLGTRRPWREMLQTSHFKFPSSFFGAIQR 60

Query: 59  IQSNAAFYRMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFVI 118
           I +NA  +R NY +IIL ++ +SL  +P+SLIILI+++ AWL+LYFLRD   LV+  F I
Sbjct: 61  INTNAKHFRANYVIIILLVLFLSLLGHPISLIILIVMMIAWLYLYFLRDTP-LVILRFEI 119

Query: 119 DDRILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEERLGS 178
           D+R+++ +LL  TI  L LT+VT N+I+G+C+  V++  HA  R T+D+F+ D++  +G 
Sbjct: 120 DERLVVISLLLITIGLLVLTNVTYNVIVGICVALVIVLVHAMIRETEDLFTMDED--VGV 177

Query: 179 LQSNR-VVPLPLKHAASPS 196
           ++  R +V +PL+   S S
Sbjct: 178 MKGLRDIVKVPLRQPGSSS 196

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136277|gb|ADN34104.1| cytochrome p450 [Cucumis melo subsp. melo]

 Score =  149 bits (375), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 109/170 (64%), Gaps = 3/170 (1%)

Query: 1   MTTYGTIPTETPELSSQPLS--TRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIER 58
           MT+YGTIPT T   +S  L   +R K+ +++G  T  PW       S  LP +F     R
Sbjct: 483 MTSYGTIPTSTAPGTSSDLDFVSRGKQRLKAGLATRVPWRLMFDFHSFTLPFNFHETFSR 542

Query: 59  IQSNAAFYRMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFVI 118
           I++N  ++RMNY +I+L I+  SL W+P+SLI+   ++A WLFLYFLRD + L+++G +I
Sbjct: 543 IKTNIVYFRMNYVIIVLLILFFSLIWHPISLIVFTAMLAVWLFLYFLRD-EPLILFGRLI 601

Query: 119 DDRILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMF 168
           +DR++M  L   T+ FLFLT  T NI++ L IG V++  HA  R TDD+F
Sbjct: 602 NDRLVMAVLSVFTLVFLFLTKATLNILLSLLIGAVLVLIHAALRKTDDLF 651

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724643|ref|NP_001235529.1| uncharacterized protein LOC100526887 [Glycine max] gi|255631064|gb|ACU15896.1| unknown [Glycine max]

 Score =  148 bits (374), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 71/174 (40%), Positives = 115/174 (66%), Gaps = 2/174 (1%)

Query: 1   MTTYGTIPTETPELSSQPLSTRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIERIQ 60
           MT YGTIPT +   ++    +R K+ ++ G GT RPW      +S  LP    + + R++
Sbjct: 1   MTNYGTIPTSSTPSTNLEFISRAKQRVKEGLGTRRPWKLMFNFRSFALPAGVGDAVSRVR 60

Query: 61  SNAAFYRMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFVIDD 120
            N ++++MNYA+++L ++ +SL W+P+SLI+ ++L+AAWLFLYFLRD + L+++G +I D
Sbjct: 61  ENISYFQMNYAIVVLIVLFLSLLWHPISLIVFVVLMAAWLFLYFLRD-EPLIIFGRLISD 119

Query: 121 RILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEE 174
           R+++  +   T+  L LT    NI++ L IG V++ AHA  R TDD+F  D+EE
Sbjct: 120 RVVLIVMAVLTVVLLLLTGAIGNILVALLIGAVLVVAHAALRKTDDLFF-DEEE 172

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523133|ref|XP_003530196.1| PREDICTED: PRA1 family protein F2-like [Glycine max]

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/197 (44%), Positives = 131/197 (66%), Gaps = 4/197 (2%)

Query: 1   MTTYGTIPTETPELSSQPLSTRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIERIQ 60
           MTTYGTI  E    S+    ++ K  IE G GT RPW E +Q   +KLP+SF   I+RI 
Sbjct: 1   MTTYGTISEEASSNSNSVFVSQAKERIEDGLGTTRPWSEMLQTCHLKLPSSFFGAIQRIN 60

Query: 61  SNAAFYRMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFVIDD 120
           +NA  +R NY +IIL ++ +SL  +P+SLIIL++++ AWL+LYFLRD   LV+  F +D+
Sbjct: 61  TNAKHFRANYVIIILLVLFLSLLGHPISLIILVVMMIAWLYLYFLRDTP-LVILRFEMDE 119

Query: 121 RILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEERLGSLQ 180
           R+++ +LL  TI  L LT+VT N+I+G+C+  VV+  HA  R T+D+F+ D++  +G ++
Sbjct: 120 RLVVISLLLITIGLLVLTNVTYNVIVGMCVALVVVLVHAIMRETEDLFTMDED--VGVVK 177

Query: 181 SNR-VVPLPLKHAASPS 196
             R VV +PL+   S S
Sbjct: 178 GFRDVVKVPLRQPGSSS 194

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
TAIR|locus:2035701	189	PRA7 [Arabidopsis thaliana (ta	0.924	0.973	0.319	2.4e-21
TAIR|locus:2007948	180	PRA1.F1 "AT1G17700" [Arabidops	0.879	0.972	0.303	5.7e-20
TAIR|locus:2025615	209	PRA1.E "AT1G08770" [Arabidopsi	0.819	0.779	0.298	7.2e-20
TAIR|locus:2091556	188	PRA8 "AT3G13720" [Arabidopsis	0.854	0.904	0.323	3.1e-19
TAIR|locus:2091541	188	PRA1.F4 "AT3G13710" [Arabidops	0.804	0.851	0.325	1.2e-17
TAIR|locus:2078371	209	PRA1.B1 "AT3G56110" [Arabidops	0.824	0.784	0.285	2e-15
TAIR|locus:2018359	182	MPI7 "CAMV movement protein in	0.804	0.879	0.267	1.8e-14
TAIR|locus:2057197	220	PRA1.B4 "AT2G38360" [Arabidops	0.844	0.763	0.25	2.7e-13
TAIR|locus:2149815	223	PRA1.B5 "AT5G01640" [Arabidops	0.954	0.852	0.257	2.7e-13
TAIR|locus:2063120	213	PRA1.B2 "AT2G40380" [Arabidops	0.814	0.760	0.269	4.4e-13

TAIR|locus:2035701 PRA7 [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 61/191 (31%), Positives = 92/191 (48%)

Query:     1 MTTYGTIPTET---PELSSQPLSTRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIE 57
             MT YG IPT +   P +  + +S R K  I+SG  T RPW      +S+ LP  F + I 
Sbjct:     1 MTNYGAIPTSSHPSPAIDLEYIS-RAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAIS 59

Query:    58 RIQSNAAFYRMNYAXXXXXXXXXXXFWNPVSXXXXXXXXXXXXXXXXXRDGDRLVVYGFV 117
             RI++N  ++R NYA            ++P S                 RD + LVV+G+ 
Sbjct:    60 RIKTNLGYFRANYAIGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLRD-EPLVVFGYQ 118

Query:   118 IDDRILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEERLG 177
             IDDR ++  L   T+  L LT  T NI+  L    V++  HA  R +D++F   DEE   
Sbjct:   119 IDDRTVLIGLSVLTVVMLLLTHATSNILGSLLTAAVLVLIHAAVRRSDNLFL--DEEAAA 176

Query:   178 SLQSNRVVPLP 188
               +++ ++  P
Sbjct:   177 VTEASGLMSYP 187

GO:0009507 "chloroplast" evidence=ISM

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2007948 PRA1.F1 "AT1G17700" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 54/178 (30%), Positives = 83/178 (46%)

Query:     1 MTTYGTIPTETPELSSQ-PLSTR-VKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIER 58
             MTTYGT    + +L+ +    TR + +   SG  T RPW + + + S   P   A  I R
Sbjct:     1 MTTYGTNQKSSNDLAPKLEYITRGINQHKRSGLATRRPWKQMLDLGSFNFPRKLATVITR 60

Query:    59 IQSNAAFYRMNYAXXXXXXXXXXXFWNPVSXXXXXXXXXXXXXXXXXRDGDRLVVYGFVI 118
             I++N  +++ NY             WNP S                 RD + L V+   I
Sbjct:    61 IRANTVYFQTNYTIVVLFSVFLSLIWNPFSLLVLLALLGAWLFLYFLRD-EPLTVFDREI 119

Query:   119 DDRILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEERL 176
             D RI++  +   T++ LFLTD   NI + +  G + + +HA  R T+D+F  D+E  L
Sbjct:   120 DHRIVLIIMSVITLSILFLTDAKLNIAVAIVAGALAVLSHAAVRKTEDLFQTDEETSL 177

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

TAIR|locus:2025615 PRA1.E "AT1G08770" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 49/164 (29%), Positives = 83/164 (50%)

Query:    19 LSTRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRMNYAXXXXXXX 78
             LS R K+  +S   T RPW E + + ++ LP  +   +  ++ N +++R NYA       
Sbjct:    32 LSARAKQTTQSMITTLRPWREILDLSALSLPRGYDEAMAHLKHNISYFRGNYALAVLAIV 91

Query:    79 XXXXFWNPVSXXXXXXXXXXXXXXXXXRDG-DRLVVYGFVIDDRILMTALLPGTIAFLFL 137
                  ++P+S                 RD  D +V+ G  +DD+I++  L   T+  L  
Sbjct:    92 FLGLIYHPMSMIAFIVVFIGWILLYFSRDANDSIVISGKEVDDKIVLVLLSLVTVLALVY 151

Query:   138 TDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEERLGSLQS 181
             TDV +N+++ L IG +++ AH  FR+TDD+F  ++  R G L S
Sbjct:   152 TDVGENVLVSLIIGLLIVGAHGAFRNTDDLFLDEESARRGGLVS 195

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2091556 PRA8 "AT3G13720" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 57/176 (32%), Positives = 85/176 (48%)

Query:     1 MTTYGTIPTET---PELSSQPLSTRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIE 57
             MT YG IPT +   P +  + LS R K  I++G  T R W       S+ LP   ++   
Sbjct:     1 MTNYGAIPTSSHASPLVDVESLS-RAKHRIKAGLATRRAWRVMFDFHSMGLPHGVSDAFT 59

Query:    58 RIQSNAAFYRMNYAXXXXXXXXXXXFWNPVSXXXXXXXXXXXXXXXXXRDGDRLVVYGFV 117
             RI++N A++RMNYA            W+P S                 RD + + ++ F 
Sbjct:    60 RIKTNLAYFRMNYAIVVLIVIFFSLIWHPTSLIVFTVLVVVWIFLYFLRD-EPIKLFRFQ 118

Query:   118 IDDRILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDE 173
             IDDR ++  L   T+  L LT+ T NI+  L  G V++  H+  R T+D+F  D+E
Sbjct:   119 IDDRTVLIVLSVLTVVLLLLTNATFNIVGALVTGAVLVLIHSVVRKTEDLF-LDEE 173

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

TAIR|locus:2091541 PRA1.F4 "AT3G13710" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 53/163 (32%), Positives = 77/163 (47%)

Query:    11 TPELSSQPLSTRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRMNY 70
             +P ++ + +S R K+ I+ G  T R W     + S  LP   ++   RI++N A++R NY
Sbjct:    14 SPAVNHESIS-RAKQRIKDGLATRRSWRVMFDLHSTGLPHGVSDVFSRIKTNLAYFRSNY 72

Query:    71 AXXXXXXXXXXXFWNPVSXXXXXXXXXXXXXXXXXRDGDRLVVYGFVIDDRILMTALLPG 130
             A            W+P S                 RD   L V+ F IDDR ++  L   
Sbjct:    73 AIVILNVIFFSLIWHPTSLIVFTGLVFLWIFLYFLRDVP-LKVFRFQIDDRAVLIGLSVI 131

Query:   131 TIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDE 173
             TI  L LT+ T NI+  L  G V++  HA  R TDD+F  D+E
Sbjct:   132 TIVLLLLTNATFNIVAALMAGAVLVLIHAVIRKTDDLF-LDEE 173

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

TAIR|locus:2078371 PRA1.B1 "AT3G56110" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 48/168 (28%), Positives = 73/168 (43%)

Query:     8 PTETPELSSQPLSTRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIERIQSNAAFYR 67
             P  TP   +    +R+   I  G    RPW E I   S+  P S  + + RI+ N A+++
Sbjct:    20 PINTPAFRT--FFSRLSTSIRDGLSQRRPWTELIDRSSMARPESLTDALSRIRKNLAYFK 77

Query:    68 MNYAXXXXXXXXXXXFWNPVSXXXXXXXXXXXXXXXXXRDGDR-LVVYGFVIDDRILMTA 126
             +NY            F +P+S                 R  D+ LVV+G    DR  + A
Sbjct:    78 VNYVAIVSLVLAFSLFSHPLSLLVLIGLLGGWMFLYLFRPSDQPLVVFGRTFSDRETLLA 137

Query:   127 LLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEE 174
             L+  TI  +F+T V   +   L IG  ++  H  F   DD+F  D++E
Sbjct:   138 LVLSTIVVVFMTSVGSLLTSALMIGVAIVCVHGAFVVPDDLF-LDEQE 184

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2018359 MPI7 "CAMV movement protein interacting protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 43/161 (26%), Positives = 70/161 (43%)

Query:    21 TRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRMNYAXXXXXXXXX 80
             T +K   +S  G  RPW +F+ + +   P+S A+   R+  N   +R+NY+         
Sbjct:     7 TGIKETAQSITGAARPWGDFLDLSAFSFPSSIADATTRVTQNLTHFRINYSIILSILLGL 66

Query:    81 XXFWNPVSXXXXXXXXXXXXXXXXXRDGDRLVVYGFVIDDRILMTALLPGTIAFLFLTDV 140
                  P++                 R+ + L ++GF IDD I+   L+  +I  L  T V
Sbjct:    67 TLITRPIAILAFIAVGLAWFFLYFARE-EPLTIFGFTIDDGIVAVLLIGLSIGSLVTTGV 125

Query:   141 TKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEERLGSLQS 181
                 +  +  G +V+  HA  R TDD+ S D E   G + S
Sbjct:   126 WLRALTTVGFGVLVLILHAALRGTDDLVSDDLESPYGPMLS 166

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0046739 "spread of virus in multicellular host" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:2057197 PRA1.B4 "AT2G38360" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 45/180 (25%), Positives = 83/180 (46%)

Query:     6 TIPTETPE-LSSQP-LST--------RVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANF 55
             T+P+  P  + SQP ++T        ++   +++G    RPW E     ++  P S ++ 
Sbjct:    16 TVPSAAPSSVESQPPIATPAFRNFINQITETVKNGLSKRRPWAELADRSALSKPESISDA 75

Query:    56 IERIQSNAAFYRMNYAXXXXXXXXXXXFWNPVSXXXXXXXXXXXXXXXXXRDGDR-LVVY 114
               RI+ N +++++NY              +P S                 R  D+ +V++
Sbjct:    76 AVRIRKNYSYFKVNYLTVATAIVGFSLVTHPFSLVFLLCLLASWLFLYLFRPTDQPIVLF 135

Query:   115 GFVIDDRILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEE 174
             G    DR  +  L+  +I  +FLTDV   ++  + IG  +I AH  FR+ +D+F  D++E
Sbjct:   136 GRTFSDRETLGCLILFSIFVIFLTDVGSVLVSAMMIGVALICAHGAFRAPEDLF-LDEQE 194

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2149815 PRA1.B5 "AT5G01640" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 51/198 (25%), Positives = 81/198 (40%)

Query:     8 PTETPELSSQPLSTR--VKRLIES---GFGTPRPWDEFIQIQSIKLPTSFANFIERIQSN 62
             P  T  + SQP   R  V  + E+   G    RPW E +   +   P S +    R + N
Sbjct:    23 PIVTAVVESQPPVVRAFVNGVTETVCGGLSRSRPWSELLDRSAFTKPDSLSEAGTRFRKN 82

Query:    63 AAFYRMNYAXXXXXXXXXXXFWNPVSXXXXXXXXXXXXXXXXXRDGDR-LVVYGFVIDDR 121
             ++++R+NY              +P S                 R  DR L+++G    + 
Sbjct:    83 SSYFRVNYVCIVALILGFSLLAHPFSLILLLCLAASWLFLYLFRPSDRPLILFGRSFSEY 142

Query:   122 ILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEERLGSLQS 181
               +  L+  TIA +F T V   +I  L IG   I  H  FR+ DD+F  + +       S
Sbjct:   143 ETLGGLILSTIAVIFFTSVGSVLISALMIGIATICVHGAFRAPDDLFLDEQDHAASGFLS 202

Query:   182 NRVVPLPLKHAASPSSSS 199
                + +P   + +PS+SS
Sbjct:   203 --FIGVPAIPSVAPSASS 218

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2063120 PRA1.B2 "AT2G40380" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 45/167 (26%), Positives = 70/167 (41%)

Query:    12 PELSSQPLSTRVKRLIES---GFGTPRPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRM 68
             P ++S    T + RL  S        RPW E +   S   P S  +   RI+ N A++++
Sbjct:    21 PPINSHAFRTFLSRLSSSLRESLSQRRPWLELVDRSSFARPDSLTDSFSRIRKNLAYFKV 80

Query:    69 NYAXXXXXXXXXXXFWNPVSXXXXXXXXXXXXXXXXXRDGDR-LVVYGFVIDDRILMTAL 127
             NY+             +P S                 R  D+ LV++G    DR  +  L
Sbjct:    81 NYSAIVSLVLAFSLLSHPFSLLVLLSLLGSWMFLYLFRSSDQPLVLFGRSFSDRETLLGL 140

Query:   128 LPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEE 174
             +  TI  +F+T V   +   L IG  ++  H  FR  DD+F  D++E
Sbjct:   141 VLTTIVVVFMTSVGSLLTSALTIGIAIVCLHGAFRVPDDLF-LDEQE 186

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C889	PR1F2_ARATH	No assigned EC number	0.3979	0.9246	0.9735	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034192001 SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (198 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	199
pfam03208	153	pfam03208, PRA1, PRA1 family protein	1e-40
COG5130	169	COG5130, YIP3, Prenylated rab acceptor 1 and relat	1e-05

>gnl|CDD|190565 pfam03208, PRA1, PRA1 family protein

 Score =  134 bits (340), Expect = 1e-40
 Identities = 55/153 (35%), Positives = 92/153 (60%)

Query: 26  LIESGFGTPRPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRMNYAVIILSIIVVSLFWN 85
            ++S     RPW EF        P SF+    R++ N  +++ NYA+++L+++++SL  N
Sbjct: 1   SVQSRLAPLRPWSEFFDRSRFSRPRSFSEATSRVRRNLLYFQTNYAIVVLAVLLLSLLTN 60

Query: 86  PVSLIILIILIAAWLFLYFLRDGDRLVVYGFVIDDRILMTALLPGTIAFLFLTDVTKNII 145
           P+SLI+L++L+AAWLFLYFLR  + LV++G    DR ++  LL  ++  LFLT     ++
Sbjct: 61  PLSLIVLLVLVAAWLFLYFLRPNEPLVLFGRTFSDRQVLIGLLVVSVPLLFLTSAGSVLL 120

Query: 146 IGLCIGTVVIAAHAGFRSTDDMFSADDEERLGS 178
             L  G +++ AHA FR  +D+F  ++E     
Sbjct: 121 WLLGAGLLLVLAHAAFRLRNDLFLDENEAESIG 153

This family includes the PRA1 (Prenylated rab acceptor) protein which is a Rab guanine dissociation inhibitor (GDI) displacement factor. This family also includes the glutamate transporter EAAC1 interacting protein GTRAP3-18. Length = 153

>gnl|CDD|227459 COG5130, YIP3, Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 8/135 (5%)

Query: 29  SGFGTPRPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRMNYAVIILSIIVVSLFWNPVS 88
                 R   EF  I  I +P +F     R+ +N   +  NY  II  + +  L +N + 
Sbjct: 27  GDKDVTR---EFFNIGRISVPQNFNEAQSRVFANLDRFSSNYLAIIAILTIYYLLYNLL- 82

Query: 89  LIILIILIAAWLFLYFLRDGDRLVVYGFVIDDRILMTALLPGTIAFLFLTDVTKNI--II 146
           L+I+I ++ A ++      G  LV    +    +L   L+   I F F       +  + 
Sbjct: 83  LLIVIGIVVAGVYGIRKLRGRPLVCNIELEPRSVLYAGLVCVLIPFGFFASPIVTLLWLS 142

Query: 147 GLCIGTVVIAAHAGF 161
           G     VV+  HA  
Sbjct: 143 GAS--GVVVFGHAAL 155

Length = 169

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	199
KOG3142	187	consensus Prenylated rab acceptor 1 [Intracellular	100.0
PF03208	153	PRA1: PRA1 family protein; InterPro: IPR004895 Thi	100.0
COG5130	169	YIP3 Prenylated rab acceptor 1 and related protein	99.91
KOG4050	188	consensus Glutamate transporter EAAC1-interacting	99.88

>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-50  Score=331.61  Aligned_cols=180  Identities=42%  Similarity=0.737  Sum_probs=171.0

Q ss_pred             CCCCCCCCCCCCC---CCCchhhHHHHHHHhhCCCCCCChhHhhccCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 043789            1 MTTYGTIPTETPE---LSSQPLSTRVKRLIESGFGTPRPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRMNYAVIILSI   77 (199)
Q Consensus         1 m~~~gt~p~~~~~---~~~~~~~s~~~~~~~~~l~~~RPw~eF~~~~~fs~P~s~~~a~~Rv~~Nl~yF~~NY~li~~~~   77 (199)
                      |+++|+.|+.+.+   .+..++.++++|++++.+++.|||+||+|+++|++|++++|+.+|+++|+.|||.||++++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lst~RpW~ef~d~~~fs~P~s~s~a~sRi~~Nl~yF~~NY~~iv~~~   80 (187)
T KOG3142|consen    1 MTNQGAPPPSSSPSQALSVESISSRAKQTIQSGLSTRRPWSEFFDRSAFSRPRSLSDATSRIKRNLSYFRVNYVIIVAIL   80 (187)
T ss_pred             CCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHhccCCHHHHHcccccCCCccHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            8889999865444   3333678889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHhcCCCceEEcCeeehhHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Q 043789           78 IVVSLFWNPVSLIILIILIAAWLFLYFLRDGDRLVVYGFVIDDRILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAA  157 (199)
Q Consensus        78 ~~~~ll~~P~~ll~l~~~~~~~~~l~~~~~~~~~~i~gr~~~~~~~~~~l~~~s~~ll~~t~~~~~l~~~l~~s~~vil~  157 (199)
                      .++++++||++|+++++.+++|+++|+.||+ |++++||+++++++++++++++++++|+++++.+++|++++|+++|+.
T Consensus        81 ~~~sLi~~P~~Livl~~lv~~w~~LY~~rd~-pLvlfgr~i~d~~~l~~L~~~ti~~lflt~~~~~l~~~l~~g~~vv~~  159 (187)
T KOG3142|consen   81 LFLSLITHPLSLIVLLALVAAWLFLYFLRDE-PLVLFGRQISDREVLIGLVLITIPVLFLTSAGSNLLWALGAGLVVVLI  159 (187)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHheeeecCC-CeEEeeEEecCcchhhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHh
Confidence            9999999999999999999999999999977 999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCCCCCcchhhhhhcCccc
Q 043789          158 HAGFRSTDDMFSADDEERLGSLQS  181 (199)
Q Consensus       158 HA~~R~~~~~f~dE~~~~~~~~~~  181 (199)
                      ||+||++||+|.|||++.-+|++|
T Consensus       160 Haafr~~ddLF~dee~~~~~gl~s  183 (187)
T KOG3142|consen  160 HAAFRNTDDLFLDEEEAAASGLLS  183 (187)
T ss_pred             HHHHhChHhhhhhhhhcccccccc
Confidence            999999999999999999899998

>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1

Probab=100.00  E-value=1.9e-36  Score=241.43  Aligned_cols=147  Identities=31%  Similarity=0.576  Sum_probs=137.6

Q ss_pred             hhCCCCCCChhHhhccCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhcC
Q 043789           28 ESGFGTPRPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLRD  107 (199)
Q Consensus        28 ~~~l~~~RPw~eF~~~~~fs~P~s~~~a~~Rv~~Nl~yF~~NY~li~~~~~~~~ll~~P~~ll~l~~~~~~~~~l~~~~~  107 (199)
                      +++++++|||+||+|.++|+.|+|.+|+.+|+++|+.|||+||+++++++++++++++|+.++++++++++|++++..++
T Consensus         2 ~~~~~~~Rpw~eF~~~~~fs~P~~~~~~~~Ri~~Nl~~F~~NY~~i~~~~~~~~ll~~P~~l~~~~~~~~~~~~~~~~~~   81 (153)
T PF03208_consen    2 QSRLSPLRPWREFFDTSRFSVPSSFSEAKSRIKRNLSYFQTNYLLIFLLLFLIFLLTNPFFLLVLLLVVALWAFIYKSRK   81 (153)
T ss_pred             ccccCCCCCHHHHhCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999888776


Q ss_pred             -CCceEEcCeeehhHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhhcccCCCCCCcchhhh
Q 043789          108 -GDRLVVYGFVIDDRILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDDMFSADDEE  174 (199)
Q Consensus       108 -~~~~~i~gr~~~~~~~~~~l~~~s~~ll~~t~~~~~l~~~l~~s~~vil~HA~~R~~~~~f~dE~~~  174 (199)
                       ++++++.|+++++++++.++.+++++++++++++.+++|+++++++++++||+||+||+.+.||+|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~~lvl~HA~~r~~~~~~~~e~~~  149 (153)
T PF03208_consen   82 ENDPIVIGGRKISPRQVLLALLIVSILLLFFTSAGLTLFWSLGASVLLVLLHASFREPDLKNKEENEI  149 (153)
T ss_pred             cCcchhccCcccCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhHH
Confidence             3489999999999999999999999999999999999999999999999999999998876666653

>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]

Probab=99.91  E-value=5.8e-24  Score=166.99  Aligned_cols=139  Identities=24%  Similarity=0.285  Sum_probs=127.6

Q ss_pred             HhhCCCCCCChhHhhccCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhc
Q 043789           27 IESGFGTPRPWDEFIQIQSIKLPTSFANFIERIQSNAAFYRMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLFLYFLR  106 (199)
Q Consensus        27 ~~~~l~~~RPw~eF~~~~~fs~P~s~~~a~~Rv~~Nl~yF~~NY~li~~~~~~~~ll~~P~~ll~l~~~~~~~~~l~~~~  106 (199)
                      ..+.++..+.-+||||..|.++|++++|+++|+-.|++||+.||..+...+.+|.+++||.+++++.+..++.+.+...|
T Consensus        22 ~~q~L~~~~~~~eFfni~rIs~PqNf~eaqsRv~~Nl~rFssnYlaiia~l~iy~ll~nllLlivIgivvaGvygi~kl~  101 (169)
T COG5130          22 IKQALGDKDVTREFFNIGRISVPQNFNEAQSRVFANLDRFSSNYLAIIAILTIYYLLYNLLLLIVIGIVVAGVYGIRKLR  101 (169)
T ss_pred             HHHHhcCcccHHHHhccccccCCcchHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHhhhhheeeehhhcc
Confidence            34456678888999999999999999999999999999999999999999999999999999999988888888888888


Q ss_pred             CCCceEEcCeeehhHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhhcccCCCC
Q 043789          107 DGDRLVVYGFVIDDRILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTDD  166 (199)
Q Consensus       107 ~~~~~~i~gr~~~~~~~~~~l~~~s~~ll~~t~~~~~l~~~l~~s~~vil~HA~~R~~~~  166 (199)
                      .+ |.+..-+..+.+++|++++++.+++.++.+++.+++|..++|+++++.||++..+.-
T Consensus       102 g~-~lv~~~~~~~~~~ly~glvcvlip~gffaspI~tllwl~gas~v~vfgHAal~e~p~  160 (169)
T COG5130         102 GR-PLVCNIELEPRSVLYAGLVCVLIPFGFFASPIVTLLWLSGASGVVVFGHAALLEEPL  160 (169)
T ss_pred             cC-ccccccceeecchhhhhHHHHHHHHHHHHhHHHHHHHHHhcceeEeechHHHcCCcc
Confidence            88 777766677788999999999999999999999999999999999999999999863

>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=99.88  E-value=6.3e-22  Score=158.39  Aligned_cols=134  Identities=16%  Similarity=0.280  Sum_probs=108.7

Q ss_pred             CCCCCCChhHhh-ccCCCCCC--CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH--H-H
Q 043789           30 GFGTPRPWDEFI-QIQSIKLP--TSFANFIERIQSNAAFYRMNYAVIILSIIVVSLFWNPVSLIILIILIAAWLF--L-Y  103 (199)
Q Consensus        30 ~l~~~RPw~eF~-~~~~fs~P--~s~~~a~~Rv~~Nl~yF~~NY~li~~~~~~~~ll~~P~~ll~l~~~~~~~~~--l-~  103 (199)
                      ++++.|.|+||+ +.+||..|  +|+++|++|+.+|+.|||+||++.++.++.+..+.+|.-+++.++..++...  + .
T Consensus        15 ~lpPlRa~ddF~lgS~Rfa~Pd~~D~~kW~nRVisNLLYyQTNYfv~~it~~~l~~f~sp~~iilglivvvlvi~~liwa   94 (188)
T KOG4050|consen   15 ELPPLRALDDFLLGSDRFARPDFNDFKKWNNRVISNLLYYQTNYFVTFITLFLLHGFISPQDIILGLIVVVLVIGTLIWA   94 (188)
T ss_pred             CCCcchhHHHhccCcccccCCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            789999999999 89999999  7999999999999999999999999999999999999777644333322211  1 1


Q ss_pred             HhcCCCceEEcCeeehhHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhhcccCCC
Q 043789          104 FLRDGDRLVVYGFVIDDRILMTALLPGTIAFLFLTDVTKNIIIGLCIGTVVIAAHAGFRSTD  165 (199)
Q Consensus       104 ~~~~~~~~~i~gr~~~~~~~~~~l~~~s~~ll~~t~~~~~l~~~l~~s~~vil~HA~~R~~~  165 (199)
                      ...++ .++-.+ +-.|...+++...++.++++..|+..++.+++..+++++++||++|.+|
T Consensus        95 ~~~~a-~~krmr-~~hp~~~l~gvllv~yfli~v~~~vlv~~F~il~Pv~L~lvHASLRLRn  154 (188)
T KOG4050|consen   95 ASADA-NIKRMR-TDHPLVTLAGVLLVGYFLISVFGGVLVFAFAILFPVLLVLVHASLRLRN  154 (188)
T ss_pred             HhccH-HHHHHh-hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            12232 344332 3346777788888899999999999999999999999999999999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	199
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 25/140 (17%), Positives = 44/140 (31%), Gaps = 30/140 (21%)

Query: 8   PTETPELSSQPLSTRVKRLIE----------SGFGT-----PRPWDEFIQIQSIKLPTSF 52
           P E   L  + L  R + L            S            WD +  +   KL T  
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 53  ANFIERIQSNAAFYRMNY---AV----IILSIIVVSLFWNPVSLIILIILIAAWLFLYFL 105
            + +  ++     YR  +   +V      +  I++SL W  V     ++++   L  Y L
Sbjct: 360 ESSLNVLEPAE--YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD-VMVVVNKLHKYSL 416

Query: 106 --RDGDRLVVYGFVIDDRIL 123
             +      +    I    L
Sbjct: 417 VEKQPKESTIS---IPSIYL 433

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00